Citrus Sinensis ID: 013210
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SGU9 | 441 | Methionine gamma-lyase OS | yes | no | 0.968 | 0.981 | 0.771 | 0.0 | |
| P13254 | 398 | Methionine gamma-lyase OS | yes | no | 0.818 | 0.919 | 0.377 | 3e-49 | |
| O05394 | 379 | Cystathionine gamma-lyase | yes | no | 0.780 | 0.920 | 0.335 | 1e-44 | |
| P55218 | 403 | O-succinylhomoserine sulf | no | no | 0.706 | 0.784 | 0.348 | 1e-43 | |
| Q83A83 | 387 | Cystathionine beta-lyase | yes | no | 0.731 | 0.844 | 0.324 | 5e-43 | |
| P55217 | 563 | Cystathionine gamma-synth | no | no | 0.709 | 0.563 | 0.331 | 7e-43 | |
| Q1M0P5 | 380 | Cystathionine gamma-synth | yes | no | 0.780 | 0.918 | 0.324 | 2e-41 | |
| A2RM21 | 380 | Cystathionine beta-lyase | yes | no | 0.818 | 0.963 | 0.311 | 3e-41 | |
| P0A4K2 | 380 | Cystathionine beta-lyase | yes | no | 0.818 | 0.963 | 0.311 | 3e-41 | |
| P56069 | 380 | Cystathionine gamma-synth | yes | no | 0.780 | 0.918 | 0.321 | 9e-41 |
| >sp|Q9SGU9|MGL_ARATH Methionine gamma-lyase OS=Arabidopsis thaliana GN=MGL PE=1 SV=1 | Back alignment and function desciption |
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Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/437 (77%), Positives = 382/437 (87%), Gaps = 4/437 (0%)
Query: 3 ECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSI 62
E V S KKR+ +E DGD L KKS L+ A DPAAA+A+ RHEFGEHGGVNMSI
Sbjct: 9 EPLVFSGKKRNDRDDE-DGDALV-AKKSALAVCDA--DPAAAIANIRHEFGEHGGVNMSI 64
Query: 63 EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTAS 122
EASATFTVMEP+TMRRMF GELGPD DF++YSRHFNPTVLNLSRQMAALEGT+AAYCT+S
Sbjct: 65 EASATFTVMEPDTMRRMFTGELGPDNDFYVYSRHFNPTVLNLSRQMAALEGTQAAYCTSS 124
Query: 123 GMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAI 182
GMSAISSV++QLCSSGGHVVAA TLYGGTHALL+HF PR CNITT+FVDI+DH V +AI
Sbjct: 125 GMSAISSVMLQLCSSGGHVVAASTLYGGTHALLSHFLPRTCNITTSFVDITDHGAVANAI 184
Query: 183 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVH 242
V+GRT+VLYFES++NPTL VA+IPELSR+AH+KGVTVVVDNTF+P+VLSPA+LGADVVVH
Sbjct: 185 VEGRTQVLYFESVANPTLTVADIPELSRMAHEKGVTVVVDNTFAPMVLSPAKLGADVVVH 244
Query: 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 302
SISKFISGGADIIAGAVCG NLV MMDL G+LMLLGPTMN KVAFELSERIPHLGLR
Sbjct: 245 SISKFISGGADIIAGAVCGSENLVKEMMDLRGGSLMLLGPTMNAKVAFELSERIPHLGLR 304
Query: 303 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 362
M+EH HRA ++A RM+ LG+KV+YPGLE HP H+L K M N++YG+GGLL +DMETEEKA
Sbjct: 305 MREHSHRAQVYAERMRDLGMKVIYPGLETHPQHKLFKGMVNRDYGYGGLLSIDMETEEKA 364
Query: 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 422
N+LM YLQN QFGFMAVSLGYYETLMSCSGSSTSSEL+ +K AGIS GLVRMSVGY+
Sbjct: 365 NKLMAYLQNATQFGFMAVSLGYYETLMSCSGSSTSSELDPSQKEAAGISPGLVRMSVGYV 424
Query: 423 GTLDQRWSQFEKALSRM 439
GTL+Q+W+QFEKA RM
Sbjct: 425 GTLEQKWTQFEKAFLRM 441
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Catalyzes the degradation of L-methionine to alpha-ketobutyrate, methanethiol and ammonia. Exhibits a high activity toward L-methionine, L-ethionine, L-homocysteine and seleno-L-methionine, but not L-cysteine. Involved in an alternative cysteine biosynthesis pathway to the reverse trans-sulfuration pathway (methionine->homocysteine->cystathionine->cysteine) in which methanethiol is an intermediate. Mediates also an alternative isoleucine biosynthesis pathway in which 2-ketobutyrate is an intermediate. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 1 |
| >sp|P13254|MEGL_PSEPU Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2 | Back alignment and function description |
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Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 209/389 (53%), Gaps = 23/389 (5%)
Query: 54 EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
+HGG + + +ATFT E FAGE + YSR NPT+ L +MA+LE
Sbjct: 23 DHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLE 78
Query: 113 GTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172
G EA ASGM AI+S L L G V+ TLYG T A L H + VD+
Sbjct: 79 GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDM 137
Query: 173 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 231
+D + + +A+ T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P +
Sbjct: 138 ADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR 196
Query: 232 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 291
P LGAD+VVHS +K++SG DI AG V G LV+ + QG + G ++P A
Sbjct: 197 PLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHDAAL 254
Query: 292 LSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 348
L I L LRM HC A + A R ++ L + YPGL P + L + ++
Sbjct: 255 LMRGIKTLNLRMDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP--- 310
Query: 349 GGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 407
GG++ +++ A R MN LQ +++ AVSLG E+L S T S EE+A
Sbjct: 311 GGMIAFELKGGIGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEERAH 366
Query: 408 AGISAGLVRMSVGYLGTLDQRWSQFEKAL 436
GIS GLVR+SVG L +D + ++AL
Sbjct: 367 YGISEGLVRLSVG-LEDIDDLLADVQQAL 394
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Pseudomonas putida (taxid: 303) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1 | Back alignment and function description |
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Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/370 (33%), Positives = 199/370 (53%), Gaps = 21/370 (5%)
Query: 55 HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
HGG+ + A + + + T ++ AG+ + YSR NPT L + LE
Sbjct: 9 HGGITGDEKTGAVSVPIYQVSTYKQPKAGQ----HTGYEYSRTANPTRTALEALVTELES 64
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
EA Y +SGM+AI++V+M L +SG HVV +YGGT+ ++T R I +TFVD S
Sbjct: 65 GEAGYAFSSGMAAITAVMM-LFNSGDHVVLTDDVYGGTYRVMTKVLNR-LGIESTFVDTS 122
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
E V AI + TK +Y E+ +NP L + ++ ++ +A GV ++VDNTF +P P
Sbjct: 123 SREEVEKAI-RPNTKAIYIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQP 181
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+V+HS +K++ G +D++ G V + + + Q + G + P+ ++ L
Sbjct: 182 LTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEELHFVQNS---TGGVLGPQDSWLL 238
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKK-LGLKVL-YPGLEDHPHHELLKSMANKEYGFGG 350
I LGLRM+ A A ++ ++ L YPG +HP HEL K+ GFGG
Sbjct: 239 MRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLYYPGSSNHPGHELAKTQGA---GFGG 295
Query: 351 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 410
++ D+ +EE+ + + L+ + +A SLG E+L+S T + + E + GI
Sbjct: 296 MISFDIGSEERVDAFLGNLKLFT----IAESLGAVESLISVPARMTHASIPRERRLELGI 351
Query: 411 SAGLVRMSVG 420
+ GL+R+SVG
Sbjct: 352 TDGLIRISVG 361
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Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|P55218|METZ_PSEAE O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=metZ PE=1 SV=1 | Back alignment and function description |
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Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 189/333 (56%), Gaps = 17/333 (5%)
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151
+YSR+ NPTV ++AALEG E A TASGMSAI +++M LCSSG HV+ +R+++G T
Sbjct: 66 VYSRYTNPTVRTFEERIAALEGAEQAVATASGMSAILALVMSLCSSGDHVLVSRSVFGST 125
Query: 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211
+L +F R I + +SD +A + TK+ + ES SNP + +I L+ +
Sbjct: 126 ISLFDKYFKR-FGIQVDYPPLSDLAAWEAA-CKPNTKLFFVESPSNPLAELVDIAALAEI 183
Query: 212 AHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 270
AH KG + VDN F +P + P +LGADVV+HS +K+I G + G V G + ++
Sbjct: 184 AHAKGALLAVDNCFCTPALQQPLKLGADVVIHSATKYIDGQGRGMGGVVAGRGEQMKEVV 243
Query: 271 DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM-KKLGL-KVLYPG 328
G L GPT++P A+ + + L +RM+ H AL A + ++ G+ +V Y G
Sbjct: 244 ----GFLRTAGPTLSPFNAWLFLKGLETLRIRMQAHSASALALAEWLERQPGIERVYYAG 299
Query: 329 LEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYET 387
L HP HEL + ++ GFG ++ D++ + A R ++ + + + +LG +T
Sbjct: 300 LPSHPQHELAR---RQQSGFGAVVSFDVKGGRDAAWRFIDATRMVS----ITTNLGDTKT 352
Query: 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
++ +++ L+ E++A AGI L+R++VG
Sbjct: 353 TIAHPATTSHGRLSPEDRARAGIGDSLIRVAVG 385
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Catalyzes the formation of L-homocysteine from O-succinyl-L-homoserine (OSHS) and hydrogen sulfide. Can not use the other activated form of L-homoserine, O-acetyl-L-homoserine, as a substrate. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: - |
| >sp|Q83A83|METC_COXBU Cystathionine beta-lyase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=metC PE=1 SV=1 | Back alignment and function description |
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Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 181/342 (52%), Gaps = 15/342 (4%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
+ YSR NPT R +A LE + + ASGM+A +++L +L G HVV +YGG
Sbjct: 50 YEYSRSQNPTRFAYERCVADLESGQHGFAFASGMAATATIL-ELLQPGDHVVVMDDVYGG 108
Query: 151 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210
++ L + R+ ++ +FVD +D V A V +TK+L+ ES SNP L + ++ +++
Sbjct: 109 SYRLFENVRKRSAGLSFSFVDFTDENKVREA-VTAKTKMLWVESPSNPRLKIVDLAKIAE 167
Query: 211 LAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG-AVCGPANLVNS 268
+A +K + V DNTF +P++ P LG D+V HS +K+++G +DII G AV G +
Sbjct: 168 IAKEKNIIAVADNTFATPIIQRPLELGFDIVTHSATKYLNGHSDIIGGVAVVGDNKTLAE 227
Query: 269 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLY 326
+ Q A +G P +F + + L +RM+ HC A+ A+ ++K +V Y
Sbjct: 228 QLKYLQNA---IGAIAAPFDSFMVLRGLKTLAIRMERHCENAMQLAQWLEKHPKVKRVYY 284
Query: 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386
PGL HP H + K FGG++ ++++ + N L+ Q +A SLG E
Sbjct: 285 PGLPSHPQHSIAKKQMRY---FGGMISVELKCD--LNETKKVLER-CQLFTLAESLGGVE 338
Query: 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428
+L+ T + + E+ GI+ G +R+SVG D R
Sbjct: 339 SLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGIEAITDLR 380
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Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 |
| >sp|P55217|METB_ARATH Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 180/335 (53%), Gaps = 18/335 (5%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
F Y R+ NPT + L +++ALEG E+ ASGM A + +L+ L +GGH+V Y
Sbjct: 224 FEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCYRK 283
Query: 151 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210
T + +F P+ IT T +D +D + +A+ + + + + ES +NP L +I +S+
Sbjct: 284 TRIFMENFLPK-LGITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVSK 342
Query: 211 LAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 269
+ H +G V +D TF +PL LGAD+VVHS +K+I G D++AG +CG LV+ +
Sbjct: 343 ICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSEI 402
Query: 270 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK---KLGLKVLY 326
+LH +LG T+NP A+ + + L LR+++ A A ++ K+ V Y
Sbjct: 403 RNLHH----VLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVS-HVYY 457
Query: 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYY 385
PGL HP HEL K GFGG++ +++ + E + ++ L + ++A S G
Sbjct: 458 PGLPSHPEHELAKRQMT---GFGGVVSFEIDGDIETTIKFVDSL----KIPYIAPSFGGC 510
Query: 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
E+++ + +L EE+ GI LVR S G
Sbjct: 511 ESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFG 545
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Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 187/370 (50%), Gaps = 21/370 (5%)
Query: 55 HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
HGG++ A + + + T R+ G + YSR NPT L +A LEG
Sbjct: 9 HGGISEDATTGAVSVPIYQTSTYRQDAIGH----HKGYEYSRSGNPTRFALEELIADLEG 64
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
+ ASG++ I +V L SG HV+ +YGGT L + ++ T +D S
Sbjct: 65 GVKGFAFASGLAGIHAVF-SLLQSGDHVLLGDDVYGGTFRLFNKVLVKN-GLSCTIIDTS 122
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D + AI + TK LY E+ SNP L + ++ + + +A D G+ +VDNTF +P +P
Sbjct: 123 DLSQIKKAI-KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNP 181
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+VVHS +K++ G +D++AG V + + Q A +G + P+ ++ L
Sbjct: 182 LLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNA---IGGVLGPQDSWLL 238
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 350
I LGLRM+ H AL A ++K +V YPGL HP++EL K GF G
Sbjct: 239 QRGIKTLGLRMQAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMR---GFSG 295
Query: 351 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 410
+L ++ + +A + L+ + + SLG E+L+ T + + ++ AGI
Sbjct: 296 MLSFTLKNDSEATPFVESLKLF----ILGESLGGVESLVGVPAFMTHACIPKTQREAAGI 351
Query: 411 SAGLVRMSVG 420
GLVR+SVG
Sbjct: 352 RDGLVRLSVG 361
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Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia. Helicobacter pylori (taxid: 210) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 8 |
| >sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 205/388 (52%), Gaps = 22/388 (5%)
Query: 55 HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
HGG++ A + + + T ++ LG +++ YSR NPT L +A LEG
Sbjct: 10 HGGISTDKTTGAVSVPIYQTSTYKQ---NGLGQPKEYE-YSRSGNPTRHALEELIADLEG 65
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
+ +SG++ I +VL L S+G H++ A +YGGT L+ + I VD+S
Sbjct: 66 GVQGFAFSSGLAGIHAVL-SLFSAGDHIILADDVYGGTFRLMDKVLTK-TGIIYDLVDLS 123
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
+ + + +A + TK +YFE+ SNP L V +I E+S +A +VDNTF +P + P
Sbjct: 124 NLDDLKAAFKE-ETKAIYFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQP 182
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+V+HS +K++ G +D++AG V + + S + Q + +G + P+ ++ +
Sbjct: 183 IALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNS---IGAVLGPQDSWLV 239
Query: 293 SERIPHLGLRMKEHCHRALIFARRMK--KLGLKVLYPGLEDHPHHELLKSMANKEYGFGG 350
I L LRM+ H A A ++ K KV YPGL HP HE+ K + FGG
Sbjct: 240 QRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMS---AFGG 296
Query: 351 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 410
++ ++ E N + ++++N + F +A SLG E+L+ T + + E + GI
Sbjct: 297 MISFELTDE---NAVKDFVENLSYFT-LAESLGGVESLIEVPAVMTHASIPKELREEIGI 352
Query: 411 SAGLVRMSVGYLGTLDQRWSQFEKALSR 438
GL+R+SVG + ++ + ++AL +
Sbjct: 353 KDGLIRLSVG-VEAIEDLLTDIKEALEK 379
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The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese. Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 |
| >sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 205/388 (52%), Gaps = 22/388 (5%)
Query: 55 HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
HGG++ A + + + T ++ LG +++ YSR NPT L +A LEG
Sbjct: 10 HGGISTDKTTGAVSVPIYQTSTYKQ---NGLGQPKEYE-YSRSGNPTRHALEELIADLEG 65
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
+ +SG++ I +VL L S+G H++ A +YGGT L+ + I VD+S
Sbjct: 66 GVQGFAFSSGLAGIHAVL-SLFSAGDHIILADDVYGGTFRLMDKVLTK-TGIIYDLVDLS 123
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
+ + + +A + TK +YFE+ SNP L V +I E+S +A +VDNTF +P + P
Sbjct: 124 NLDDLKAAFKE-ETKAIYFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQP 182
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+V+HS +K++ G +D++AG V + + S + Q + +G + P+ ++ +
Sbjct: 183 IALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNS---IGAVLGPQDSWLV 239
Query: 293 SERIPHLGLRMKEHCHRALIFARRMK--KLGLKVLYPGLEDHPHHELLKSMANKEYGFGG 350
I L LRM+ H A A ++ K KV YPGL HP HE+ K + FGG
Sbjct: 240 QRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMS---AFGG 296
Query: 351 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 410
++ ++ E N + ++++N + F +A SLG E+L+ T + + E + GI
Sbjct: 297 MISFELTDE---NAVKDFVENLSYFT-LAESLGGVESLIEVPAVMTHASIPKELREEIGI 352
Query: 411 SAGLVRMSVGYLGTLDQRWSQFEKALSR 438
GL+R+SVG + ++ + ++AL +
Sbjct: 353 KDGLIRLSVG-VEAIEDLLTDIKEALEK 379
|
The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese. Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 |
| >sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (425), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 186/370 (50%), Gaps = 21/370 (5%)
Query: 55 HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
HGG++ A + + + T R+ G + YSR NPT L +A LEG
Sbjct: 9 HGGISEDATTGAVSVPIYQTSTYRQDAIGR----HKGYEYSRSGNPTRFALEELIADLEG 64
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
+ ASG++ I +V L SG HV+ +YGGT L + ++ T +D S
Sbjct: 65 GVKGFAFASGLAGIHAVF-SLLQSGDHVLLGDDVYGGTFRLFNQVLVKN-GLSCTIIDTS 122
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D + AI + TK LY E+ SNP L + ++ + + +A D G+ +VDNTF +P +P
Sbjct: 123 DISQIKKAI-KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNP 181
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+V HS +K++ G +D++AG V + + Q A +G + P+ ++ L
Sbjct: 182 LLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNA---IGGVLGPQDSWLL 238
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 350
I LGLRM+ H AL A ++K +V YPGL HP++EL K GF G
Sbjct: 239 QRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMR---GFSG 295
Query: 351 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 410
+L ++ + +A + L+ + + SLG E+L+ T + + ++ AGI
Sbjct: 296 MLSFTLKNDSEAVAFVESLKLF----ILGESLGGVESLVGIPAFMTHACIPKTQREAAGI 351
Query: 411 SAGLVRMSVG 420
GLVR+SVG
Sbjct: 352 RDGLVRLSVG 361
|
Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia. Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | ||||||
| 224057996 | 454 | predicted protein [Populus trichocarpa] | 0.991 | 0.975 | 0.860 | 0.0 | |
| 255555749 | 449 | cystathionine gamma-synthase, putative [ | 0.977 | 0.973 | 0.845 | 0.0 | |
| 225426590 | 438 | PREDICTED: methionine gamma-lyase [Vitis | 0.977 | 0.997 | 0.820 | 0.0 | |
| 451811145 | 449 | methionine gamma-lyase [Cucumis melo] | 0.966 | 0.962 | 0.785 | 0.0 | |
| 449456795 | 450 | PREDICTED: methionine gamma-lyase-like [ | 0.968 | 0.962 | 0.779 | 0.0 | |
| 356502410 | 440 | PREDICTED: methionine gamma-lyase-like [ | 0.973 | 0.988 | 0.775 | 0.0 | |
| 307136088 | 417 | cystathionine gamma-synthase [Cucumis me | 0.908 | 0.973 | 0.822 | 0.0 | |
| 15217709 | 441 | methionine gamma-lyase [Arabidopsis thal | 0.968 | 0.981 | 0.771 | 0.0 | |
| 356547511 | 440 | PREDICTED: methionine gamma-lyase-like [ | 0.973 | 0.988 | 0.777 | 0.0 | |
| 356535270 | 442 | PREDICTED: methionine gamma-lyase-like [ | 0.984 | 0.995 | 0.771 | 0.0 |
| >gi|224057996|ref|XP_002299428.1| predicted protein [Populus trichocarpa] gi|222846686|gb|EEE84233.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/445 (86%), Positives = 414/445 (93%), Gaps = 2/445 (0%)
Query: 5 FVLSSKKRSAGTEETDGDDLYKTKKSMLSTA--AAWEDPAAALASARHEFGEHGGVNMSI 62
FV S KKRS+ ++ D D + KKSMLST + WEDPAAALASARHEFGEHGGVNMSI
Sbjct: 10 FVFSGKKRSSTGQDGDDDFIVSNKKSMLSTGLPSMWEDPAAALASARHEFGEHGGVNMSI 69
Query: 63 EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTAS 122
EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNL RQMAALEGTEAAYCTAS
Sbjct: 70 EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLGRQMAALEGTEAAYCTAS 129
Query: 123 GMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAI 182
GMSAISSVL+QLCSSGGH+VA+RTLYGGTHALLTHF PRACNITTTFVDI+DHEMV +A+
Sbjct: 130 GMSAISSVLLQLCSSGGHMVASRTLYGGTHALLTHFLPRACNITTTFVDINDHEMVKNAM 189
Query: 183 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVH 242
V+G+TKVLYFESISNPTL VANIPELSR+AHDKG TVVVDNTFSP+VLSPARLGADVVVH
Sbjct: 190 VEGQTKVLYFESISNPTLTVANIPELSRIAHDKGATVVVDNTFSPMVLSPARLGADVVVH 249
Query: 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 302
SISKFISGGADIIAGAVCGPANLVNSMMDL GALMLLGPTMN KVAFELSERIPHLGLR
Sbjct: 250 SISKFISGGADIIAGAVCGPANLVNSMMDLQHGALMLLGPTMNAKVAFELSERIPHLGLR 309
Query: 303 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 362
MKEHCHRA+++A ++KKLGL V+YPGLEDHP HELLKSMANKEYGFGGLLC+DMETEEKA
Sbjct: 310 MKEHCHRAMVYATKIKKLGLNVIYPGLEDHPQHELLKSMANKEYGFGGLLCIDMETEEKA 369
Query: 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 422
NRLMN+LQN QFGFMAVSLGYYETLMSCSGSSTSSELN EE+ALAGIS GLVR+SVG++
Sbjct: 370 NRLMNHLQNCTQFGFMAVSLGYYETLMSCSGSSTSSELNDEEQALAGISPGLVRISVGFV 429
Query: 423 GTLDQRWSQFEKALSRMQDSGVFKN 447
GTL Q+WSQFEKA SR+QDSG++KN
Sbjct: 430 GTLAQKWSQFEKAFSRLQDSGLYKN 454
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555749|ref|XP_002518910.1| cystathionine gamma-synthase, putative [Ricinus communis] gi|223541897|gb|EEF43443.1| cystathionine gamma-synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/439 (84%), Positives = 409/439 (93%), Gaps = 2/439 (0%)
Query: 5 FVLSSKKRSAGTEETDG-DDLYKTKKSMLSTAAAW-EDPAAALASARHEFGEHGGVNMSI 62
F+L+ KKR AG +E DG DD +KKSML A+ EDPAA LA++RHEFGEHGGVNMSI
Sbjct: 9 FLLAGKKRGAGQDEFDGGDDFIVSKKSMLPPGVAYGEDPAAGLAASRHEFGEHGGVNMSI 68
Query: 63 EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTAS 122
EASATFTVMEP+TMRRMF+GELGPDRDFFIYSRHFNPTVLNL RQMAALEGTEAAYCTAS
Sbjct: 69 EASATFTVMEPDTMRRMFSGELGPDRDFFIYSRHFNPTVLNLGRQMAALEGTEAAYCTAS 128
Query: 123 GMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAI 182
GMSAISSV +QLCSSGGHVVA+RTLYGGTHALL+HF PRACNITTTFV+I D EMV +AI
Sbjct: 129 GMSAISSVFLQLCSSGGHVVASRTLYGGTHALLSHFLPRACNITTTFVEIGDIEMVKNAI 188
Query: 183 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVH 242
V+G+TKV YFESI+NPTL VANIPELSR+AHDKGVTVVVDNTF+P+V+SPARLGADVVVH
Sbjct: 189 VEGKTKVFYFESIANPTLTVANIPELSRIAHDKGVTVVVDNTFAPMVISPARLGADVVVH 248
Query: 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 302
SI+KFISGGADIIAGAVCGPA+LVNSMMDLHQGA+MLLGPTMN KVAF+LS RIPHLGLR
Sbjct: 249 SITKFISGGADIIAGAVCGPASLVNSMMDLHQGAIMLLGPTMNAKVAFDLSGRIPHLGLR 308
Query: 303 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 362
MKEHCHRA+++A RMKKLGLKV+YPGLEDHPHH+LLKSMANK+YGFG LLCLDMETEEKA
Sbjct: 309 MKEHCHRAMVYATRMKKLGLKVIYPGLEDHPHHQLLKSMANKDYGFGALLCLDMETEEKA 368
Query: 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 422
NRL+N+LQNY QFGFMAVSLGYYETLMS SGSSTSSELNAEEK LAGIS GL+RMSVGYL
Sbjct: 369 NRLLNHLQNYTQFGFMAVSLGYYETLMSVSGSSTSSELNAEEKKLAGISPGLIRMSVGYL 428
Query: 423 GTLDQRWSQFEKALSRMQD 441
GTL+Q+WSQFEKALSRM++
Sbjct: 429 GTLEQKWSQFEKALSRMKE 447
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426590|ref|XP_002280162.1| PREDICTED: methionine gamma-lyase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/440 (82%), Positives = 393/440 (89%), Gaps = 3/440 (0%)
Query: 1 MAECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNM 60
MA V + KKR +E D L K + L A EDP AALA ARHEFGEHGGVNM
Sbjct: 1 MATSVVHAGKKRKGADDE---DHLVAKKSASLPAVAKGEDPMAALAMARHEFGEHGGVNM 57
Query: 61 SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120
SIEASATFTVMEP+TMRRMF+GELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT
Sbjct: 58 SIEASATFTVMEPDTMRRMFSGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 117
Query: 121 ASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNS 180
+SGMSAIS+ L+QLCSSG H+VA+RTLYGGTHALLTHFFPR CNITT+FVDI D +MV+
Sbjct: 118 SSGMSAISAALLQLCSSGDHIVASRTLYGGTHALLTHFFPRTCNITTSFVDIKDLDMVDG 177
Query: 181 AIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVV 240
AI++GRTKVLYFE+I+NP L+VAN+PEL R+AHDKG+TVVVDNTF+P+V+SPA+LGADVV
Sbjct: 178 AIIEGRTKVLYFEAIANPVLSVANVPELCRVAHDKGLTVVVDNTFAPMVMSPAKLGADVV 237
Query: 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 300
VHSISKFISGGADIIAGAVCGPA LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG
Sbjct: 238 VHSISKFISGGADIIAGAVCGPAKLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 297
Query: 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 360
LRMKEHC RAL +A RMKKLGLKV+YPGLE HP H +LKS+AN +YGFGGLLCLDM TEE
Sbjct: 298 LRMKEHCRRALEYATRMKKLGLKVIYPGLEGHPDHTVLKSIANLDYGFGGLLCLDMGTEE 357
Query: 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
KANRLMN LQN QFGFMAVSLGYYETLMSCSGSSTSSE+NAEEKALAGIS GLVRMSVG
Sbjct: 358 KANRLMNLLQNSTQFGFMAVSLGYYETLMSCSGSSTSSEMNAEEKALAGISPGLVRMSVG 417
Query: 421 YLGTLDQRWSQFEKALSRMQ 440
Y GTL+QRWSQFEKALSRMQ
Sbjct: 418 YSGTLEQRWSQFEKALSRMQ 437
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|451811145|gb|AGF70153.1| methionine gamma-lyase [Cucumis melo] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/434 (78%), Positives = 384/434 (88%), Gaps = 2/434 (0%)
Query: 11 KRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTV 70
KR + E D K +M+S+ EDPAAA+A+ RHEFGEHGGVNMSIEASATFTV
Sbjct: 13 KRPSPDESDDVKTDSKKPTAMISSL--LEDPAAAIANTRHEFGEHGGVNMSIEASATFTV 70
Query: 71 MEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSV 130
MEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT AAYCT+SGMSAI++V
Sbjct: 71 MEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTAAAYCTSSGMSAIAAV 130
Query: 131 LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVL 190
L+QL +SG HVVA+RTLYGGTHAL+ HFFPR NITTTFVDI D + V AIV+G+TKVL
Sbjct: 131 LLQLLASGDHVVASRTLYGGTHALMAHFFPRTSNITTTFVDIGDLKEVEKAIVEGKTKVL 190
Query: 191 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISG 250
YFES+SNPTLAVANIPEL R+ H+KGVTVVVDNTF+P++LSPARLGADVVVHSISKFISG
Sbjct: 191 YFESVSNPTLAVANIPELCRIGHEKGVTVVVDNTFAPMILSPARLGADVVVHSISKFISG 250
Query: 251 GADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRA 310
GADIIAGAVCGP LVNSMMDL QG+LMLLGPTMN KVAFELSERIPHL LRMKEHC RA
Sbjct: 251 GADIIAGAVCGPTKLVNSMMDLRQGSLMLLGPTMNAKVAFELSERIPHLSLRMKEHCRRA 310
Query: 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 370
+FA RMKK GLKV+YPGLEDHP H+L+KS+AN EYGFGG+LC+DM TEE+AN+LM+ LQ
Sbjct: 311 SVFAERMKKAGLKVIYPGLEDHPQHQLMKSLANPEYGFGGMLCVDMGTEERANKLMSILQ 370
Query: 371 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 430
N QFGFMAVSLGYYETLMSCSGSSTSSE++ EE+ LAGIS GLVRMS+GY+GTL+Q+WS
Sbjct: 371 NTTQFGFMAVSLGYYETLMSCSGSSTSSEMSGEERELAGISPGLVRMSIGYMGTLEQKWS 430
Query: 431 QFEKALSRMQDSGV 444
QFEKAL+++QD GV
Sbjct: 431 QFEKALAKVQDIGV 444
|
Source: Cucumis melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456795|ref|XP_004146134.1| PREDICTED: methionine gamma-lyase-like [Cucumis sativus] gi|449527859|ref|XP_004170926.1| PREDICTED: methionine gamma-lyase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/436 (77%), Positives = 384/436 (88%), Gaps = 3/436 (0%)
Query: 12 RSAGTEETDGDD---LYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATF 68
R +DG D L +KK ++ EDPAAA+A+ RHEFGEHGGVNMSIEASATF
Sbjct: 10 RGTKRPSSDGSDDVKLADSKKPTAMISSLLEDPAAAIANTRHEFGEHGGVNMSIEASATF 69
Query: 69 TVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAIS 128
TVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT AAYCT+SGMSAI+
Sbjct: 70 TVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTAAAYCTSSGMSAIA 129
Query: 129 SVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTK 188
+VL+QL +SG HVVA+RTLYGGTHAL+ HFFPR NITTTFVDI D + V AIV+G+TK
Sbjct: 130 AVLLQLLASGDHVVASRTLYGGTHALMAHFFPRTSNITTTFVDIGDLKEVEKAIVEGKTK 189
Query: 189 VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFI 248
VLYFES+SNPTLAVANIPEL R+ H+KGVTVVVDNTF+P++LSPARLGADVVVHSISKFI
Sbjct: 190 VLYFESVSNPTLAVANIPELCRIGHEKGVTVVVDNTFAPMILSPARLGADVVVHSISKFI 249
Query: 249 SGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCH 308
SGGADIIAGAVCGP LVNSMMDL QG+LMLLGPTMN KVAFELSERIPHL LRMKEHC
Sbjct: 250 SGGADIIAGAVCGPTKLVNSMMDLRQGSLMLLGPTMNAKVAFELSERIPHLSLRMKEHCR 309
Query: 309 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368
RA +FA RMKK GLKV+YPGL DHP H+L+KS+A+ EYGFGG+LC+DM TEEKAN+LM+
Sbjct: 310 RASVFAERMKKAGLKVVYPGLPDHPQHQLMKSLASPEYGFGGMLCVDMGTEEKANKLMSI 369
Query: 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428
LQN QFGFMAVSLGYYETLMSCSGSSTSSE++ EE+ LAGIS GLVRMS+GY+GTL+Q+
Sbjct: 370 LQNTTQFGFMAVSLGYYETLMSCSGSSTSSEMSGEERELAGISPGLVRMSIGYMGTLEQK 429
Query: 429 WSQFEKALSRMQDSGV 444
WSQFEKAL+++QD+GV
Sbjct: 430 WSQFEKALAKVQDNGV 445
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502410|ref|XP_003520012.1| PREDICTED: methionine gamma-lyase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/441 (77%), Positives = 388/441 (87%), Gaps = 6/441 (1%)
Query: 1 MAECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNM 60
MAE V +++KRS+G + +D + +K+M+ A DPA ALA RHEFGEHGGVNM
Sbjct: 1 MAESAV-TNRKRSSGDDAVSEND--RKRKNMV---ARNMDPAEALALTRHEFGEHGGVNM 54
Query: 61 SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120
SIEASATFTVMEPET+ RMFAGELGPDRDFFIYSRHFNPTV+NL R MAALEGTEAAYCT
Sbjct: 55 SIEASATFTVMEPETLGRMFAGELGPDRDFFIYSRHFNPTVVNLGRHMAALEGTEAAYCT 114
Query: 121 ASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNS 180
ASGM+AISSVL+QLCS+GGHVVA+ TLYGGTHALLTHF P CNITTTFVDI+D E V S
Sbjct: 115 ASGMAAISSVLLQLCSTGGHVVASTTLYGGTHALLTHFLPGKCNITTTFVDIADLESVES 174
Query: 181 AIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVV 240
AIV+G+T VLYFES++NP+L VA+IPEL R+ H KGVTVVVDNTF+P+V+SPARLGADVV
Sbjct: 175 AIVEGKTNVLYFESMANPSLKVADIPELCRVGHAKGVTVVVDNTFAPMVISPARLGADVV 234
Query: 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 300
VHSISKFISGGADIIAGAVCGPA+LVNSMMDLH G+LMLLGPTMN KVAFELSERIPHL
Sbjct: 235 VHSISKFISGGADIIAGAVCGPASLVNSMMDLHDGSLMLLGPTMNAKVAFELSERIPHLS 294
Query: 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 360
LRMKEHCHRAL+FA R+KKLGLKV+YPGLEDHP H+LLKS+AN+EYG+GGLLC+DM T E
Sbjct: 295 LRMKEHCHRALVFATRLKKLGLKVIYPGLEDHPQHKLLKSIANREYGYGGLLCIDMGTVE 354
Query: 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
+AN LM +LQN AQFGFMAVSLGYYETLMSCSGSSTSSE+ EE+ LAGIS GLVRMS+G
Sbjct: 355 RANLLMAHLQNDAQFGFMAVSLGYYETLMSCSGSSTSSEMTEEEQKLAGISPGLVRMSIG 414
Query: 421 YLGTLDQRWSQFEKALSRMQD 441
Y+GTL+Q+WSQ E AL R Q+
Sbjct: 415 YIGTLEQKWSQMEMALERFQE 435
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136088|gb|ADN33936.1| cystathionine gamma-synthase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/406 (82%), Positives = 373/406 (91%)
Query: 39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFN 98
EDPAAA+A+ RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFN
Sbjct: 7 EDPAAAIANTRHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFN 66
Query: 99 PTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF 158
PTVLNLSRQMAALEGT AAYCT+SGMSAI++VL+QL +SG HVVA+RTLYGGTHAL+ HF
Sbjct: 67 PTVLNLSRQMAALEGTAAAYCTSSGMSAIAAVLLQLLASGDHVVASRTLYGGTHALMAHF 126
Query: 159 FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVT 218
FPR NITTTFVDI D + V AIV+G+TKVLYFES+SNPTLAVANIPEL R+ H+KGVT
Sbjct: 127 FPRTSNITTTFVDIGDLKEVEKAIVEGKTKVLYFESVSNPTLAVANIPELCRIGHEKGVT 186
Query: 219 VVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 278
VVVDNTF+P++LSPARLGADVVVHSISKFISGGADIIAGAVCGP LVNSMMDL QG+LM
Sbjct: 187 VVVDNTFAPMILSPARLGADVVVHSISKFISGGADIIAGAVCGPTKLVNSMMDLRQGSLM 246
Query: 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELL 338
LLGPTMN KVAFELSERIPHL LRMKEHC RA +FA RMKK GLKV+YPGLEDHP H+L+
Sbjct: 247 LLGPTMNAKVAFELSERIPHLSLRMKEHCRRASVFAERMKKAGLKVIYPGLEDHPQHQLM 306
Query: 339 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 398
KS+AN EYGFGG+LC+DM TEE+AN+LM+ LQN QFGFMAVSLGYYETLMSCSGSSTSS
Sbjct: 307 KSLANPEYGFGGMLCVDMGTEERANKLMSILQNTTQFGFMAVSLGYYETLMSCSGSSTSS 366
Query: 399 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGV 444
E++ EE+ LAGIS GLVRMS+GY+GTL+Q+WSQFEKAL+++QD GV
Sbjct: 367 EMSGEERELAGISPGLVRMSIGYMGTLEQKWSQFEKALAKVQDIGV 412
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15217709|ref|NP_176647.1| methionine gamma-lyase [Arabidopsis thaliana] gi|75205145|sp|Q9SGU9.1|MGL_ARATH RecName: Full=Methionine gamma-lyase; Short=AtMGL; AltName: Full=L-methioninase gi|6633821|gb|AAF19680.1|AC009519_14 F1N19.23 [Arabidopsis thaliana] gi|16226491|gb|AAL16181.1|AF428413_1 At1g64660/F1N19_22 [Arabidopsis thaliana] gi|15450932|gb|AAK96737.1| similar to O-succinylhomoserine sulfhydrylase [Arabidopsis thaliana] gi|30387533|gb|AAP31932.1| At1g64660 [Arabidopsis thaliana] gi|110740851|dbj|BAE98522.1| similar to O-succinylhomoserine sulfhydrylase [Arabidopsis thaliana] gi|332196150|gb|AEE34271.1| methionine gamma-lyase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/437 (77%), Positives = 382/437 (87%), Gaps = 4/437 (0%)
Query: 3 ECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSI 62
E V S KKR+ +E DGD L KKS L+ A DPAAA+A+ RHEFGEHGGVNMSI
Sbjct: 9 EPLVFSGKKRNDRDDE-DGDALV-AKKSALAVCDA--DPAAAIANIRHEFGEHGGVNMSI 64
Query: 63 EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTAS 122
EASATFTVMEP+TMRRMF GELGPD DF++YSRHFNPTVLNLSRQMAALEGT+AAYCT+S
Sbjct: 65 EASATFTVMEPDTMRRMFTGELGPDNDFYVYSRHFNPTVLNLSRQMAALEGTQAAYCTSS 124
Query: 123 GMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAI 182
GMSAISSV++QLCSSGGHVVAA TLYGGTHALL+HF PR CNITT+FVDI+DH V +AI
Sbjct: 125 GMSAISSVMLQLCSSGGHVVAASTLYGGTHALLSHFLPRTCNITTSFVDITDHGAVANAI 184
Query: 183 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVH 242
V+GRT+VLYFES++NPTL VA+IPELSR+AH+KGVTVVVDNTF+P+VLSPA+LGADVVVH
Sbjct: 185 VEGRTQVLYFESVANPTLTVADIPELSRMAHEKGVTVVVDNTFAPMVLSPAKLGADVVVH 244
Query: 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 302
SISKFISGGADIIAGAVCG NLV MMDL G+LMLLGPTMN KVAFELSERIPHLGLR
Sbjct: 245 SISKFISGGADIIAGAVCGSENLVKEMMDLRGGSLMLLGPTMNAKVAFELSERIPHLGLR 304
Query: 303 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 362
M+EH HRA ++A RM+ LG+KV+YPGLE HP H+L K M N++YG+GGLL +DMETEEKA
Sbjct: 305 MREHSHRAQVYAERMRDLGMKVIYPGLETHPQHKLFKGMVNRDYGYGGLLSIDMETEEKA 364
Query: 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 422
N+LM YLQN QFGFMAVSLGYYETLMSCSGSSTSSEL+ +K AGIS GLVRMSVGY+
Sbjct: 365 NKLMAYLQNATQFGFMAVSLGYYETLMSCSGSSTSSELDPSQKEAAGISPGLVRMSVGYV 424
Query: 423 GTLDQRWSQFEKALSRM 439
GTL+Q+W+QFEKA RM
Sbjct: 425 GTLEQKWTQFEKAFLRM 441
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547511|ref|XP_003542155.1| PREDICTED: methionine gamma-lyase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/441 (77%), Positives = 384/441 (87%), Gaps = 6/441 (1%)
Query: 1 MAECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNM 60
MAE V++ K+ +GT++ ++ K K + A DPAAALA RHEFGEHGGVNM
Sbjct: 1 MAESAVVNRKR--SGTDDVVSENDGKRK----NVVAPDMDPAAALALTRHEFGEHGGVNM 54
Query: 61 SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120
SIEASATFTVMEPET+ RMF GELGPDRDFFIYSRHFNPTVLNL R MAALEGTEAAYCT
Sbjct: 55 SIEASATFTVMEPETLCRMFTGELGPDRDFFIYSRHFNPTVLNLGRHMAALEGTEAAYCT 114
Query: 121 ASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNS 180
ASGM+AISSVL+QLCSSGGHVVA+ TLYGGTHALLTHF P CNI+TTFVDISD E V S
Sbjct: 115 ASGMAAISSVLLQLCSSGGHVVASTTLYGGTHALLTHFLPGKCNISTTFVDISDLESVES 174
Query: 181 AIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVV 240
AIV+G+T VLYFES++NP+L VANIPEL R+ H KGVTVV DNTF+P+V+SPARLGADVV
Sbjct: 175 AIVEGKTNVLYFESMANPSLKVANIPELCRVGHAKGVTVVTDNTFAPMVISPARLGADVV 234
Query: 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 300
VHSISKFISGGADIIAGAVCGPA+LVNSMMDLH G+LMLLGPTMN KVAFELSERIPHL
Sbjct: 235 VHSISKFISGGADIIAGAVCGPASLVNSMMDLHDGSLMLLGPTMNAKVAFELSERIPHLS 294
Query: 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 360
LRMKEHCHRAL+FA R+KKLGLKV+YPGLEDHP HELLKS+AN+EYG+GGLLC+DMET E
Sbjct: 295 LRMKEHCHRALVFATRLKKLGLKVIYPGLEDHPQHELLKSIANREYGYGGLLCIDMETVE 354
Query: 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
+AN LM +LQN AQFGFMAVSLGYYETLMSCSGSSTSS + EE+ LAGIS GLVRMS+G
Sbjct: 355 RANLLMAHLQNDAQFGFMAVSLGYYETLMSCSGSSTSSGMTEEEQKLAGISPGLVRMSIG 414
Query: 421 YLGTLDQRWSQFEKALSRMQD 441
Y+GTL+Q+WSQ E AL R Q+
Sbjct: 415 YIGTLEQKWSQMEIALDRFQE 435
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535270|ref|XP_003536171.1| PREDICTED: methionine gamma-lyase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/446 (77%), Positives = 398/446 (89%), Gaps = 6/446 (1%)
Query: 1 MAECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNM 60
M + +VL++ KR+ +++ DG + KK +L A AAALASARHEFGEHGGVNM
Sbjct: 1 MGDTYVLATPKRNR-SDDVDGGE---AKKLLLQQGEADP--AAALASARHEFGEHGGVNM 54
Query: 61 SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120
SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVL+LSR MAALEGTEAAYCT
Sbjct: 55 SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLSLSRLMAALEGTEAAYCT 114
Query: 121 ASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNS 180
ASGMSAIS+VL+QLCS G HVVA+RTLYGGTHALL+HF PR C I+T+FV+++D +MV++
Sbjct: 115 ASGMSAISAVLLQLCSHGEHVVASRTLYGGTHALLSHFLPRTCGISTSFVEVTDLDMVDA 174
Query: 181 AIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVV 240
AIV+G+TKVLYFES+SNPTL VANIPEL +AH KGVTVVVDNTF+P+VLSPARLGADVV
Sbjct: 175 AIVEGKTKVLYFESVSNPTLTVANIPELCHMAHRKGVTVVVDNTFAPMVLSPARLGADVV 234
Query: 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 300
VHSISKFISGGADIIAGAVCGPA LVN+MMDL QG+LMLLGPTMN KVAFELSERIPHLG
Sbjct: 235 VHSISKFISGGADIIAGAVCGPARLVNAMMDLQQGSLMLLGPTMNAKVAFELSERIPHLG 294
Query: 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 360
LRMKEH +RAL FA R+K+LG++V+YPGLE+HP H+LLKSM NK+YG+GGL+C+DMETEE
Sbjct: 295 LRMKEHSNRALEFATRLKRLGMRVIYPGLEEHPQHQLLKSMHNKDYGYGGLMCVDMETEE 354
Query: 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
+ANR M++LQNY QFGFMAVSLGYYETLMSCSGSSTSSEL+ EEK LAGIS GLVRMS+G
Sbjct: 355 RANRFMSHLQNYGQFGFMAVSLGYYETLMSCSGSSTSSELSTEEKELAGISPGLVRMSIG 414
Query: 421 YLGTLDQRWSQFEKALSRMQDSGVFK 446
Y+GTL+Q+WSQ +KAL+R+ DSG K
Sbjct: 415 YIGTLEQKWSQLQKALTRLNDSGYNK 440
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | ||||||
| TAIR|locus:2019449 | 441 | MGL "AT1G64660" [Arabidopsis t | 0.968 | 0.981 | 0.734 | 1.9e-170 | |
| TIGR_CMR|SPO_A0318 | 400 | SPO_A0318 "methionine gamma-ly | 0.782 | 0.875 | 0.358 | 1.6e-47 | |
| UNIPROTKB|Q8EG02 | 397 | mdeA "Methionine gamma-lyase M | 0.834 | 0.939 | 0.345 | 3.3e-47 | |
| TIGR_CMR|SO_1812 | 397 | SO_1812 "methionine gamma-lyas | 0.834 | 0.939 | 0.345 | 3.3e-47 | |
| TIGR_CMR|CPS_1705 | 413 | CPS_1705 "methionine gamma-lya | 0.829 | 0.898 | 0.305 | 8.8e-47 | |
| UNIPROTKB|Q81LL6 | 377 | BAS4268 "Cys/Met metabolism PL | 0.702 | 0.832 | 0.370 | 1.1e-46 | |
| TIGR_CMR|BA_4600 | 377 | BA_4600 "cystathionine beta-ly | 0.702 | 0.832 | 0.370 | 1.1e-46 | |
| UNIPROTKB|Q4KA19 | 424 | mdeA "Methionine gamma-lyase" | 0.756 | 0.797 | 0.339 | 1.3e-43 | |
| TIGR_CMR|CBU_2025 | 387 | CBU_2025 "cystathionine beta-l | 0.800 | 0.925 | 0.315 | 7.3e-43 | |
| TAIR|locus:2102072 | 563 | MTO1 "METHIONINE OVERACCUMULAT | 0.711 | 0.564 | 0.326 | 1.9e-42 |
| TAIR|locus:2019449 MGL "AT1G64660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1657 (588.4 bits), Expect = 1.9e-170, P = 1.9e-170
Identities = 321/437 (73%), Positives = 364/437 (83%)
Query: 3 ECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTXXXXXXXXXXXXXXRHEFGEHGGVNMSI 62
E V S KKR+ +E DGD L KKS L+ RHEFGEHGGVNMSI
Sbjct: 9 EPLVFSGKKRNDRDDE-DGDALV-AKKSALAVCDADPAAAIANI--RHEFGEHGGVNMSI 64
Query: 63 EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTAS 122
EASATFTVMEP+TMRRMF GELGPD DF++YSRHFNPTVLNLSRQMAALEGT+AAYCT+S
Sbjct: 65 EASATFTVMEPDTMRRMFTGELGPDNDFYVYSRHFNPTVLNLSRQMAALEGTQAAYCTSS 124
Query: 123 GMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAI 182
GMSAISSV++QLCSSGGHVVAA TLYGGTHALL+HF PR CNITT+FVDI+DH V +AI
Sbjct: 125 GMSAISSVMLQLCSSGGHVVAASTLYGGTHALLSHFLPRTCNITTSFVDITDHGAVANAI 184
Query: 183 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVH 242
V+GRT+VLYFES++NPTL VA+IPELSR+AH+KGVTVVVDNTF+P+VLSPA+LGADVVVH
Sbjct: 185 VEGRTQVLYFESVANPTLTVADIPELSRMAHEKGVTVVVDNTFAPMVLSPAKLGADVVVH 244
Query: 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 302
SISKFISGGADIIAGAVCG NLV MMDL G+LMLLGPTMN KVAFELSERIPHLGLR
Sbjct: 245 SISKFISGGADIIAGAVCGSENLVKEMMDLRGGSLMLLGPTMNAKVAFELSERIPHLGLR 304
Query: 303 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 362
M+EH HRA ++A RM+ LG+KV+YPGLE HP H+L K M N++YG+GGLL +DMETEEKA
Sbjct: 305 MREHSHRAQVYAERMRDLGMKVIYPGLETHPQHKLFKGMVNRDYGYGGLLSIDMETEEKA 364
Query: 363 NRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYL 422
N+LM YLQN QFGFMAVSLGYYETLM EL+ +K AGIS GLVRMSVGY+
Sbjct: 365 NKLMAYLQNATQFGFMAVSLGYYETLMSCSGSSTSSELDPSQKEAAGISPGLVRMSVGYV 424
Query: 423 GTLDQRWSQFEKALSRM 439
GTL+Q+W+QFEKA RM
Sbjct: 425 GTLEQKWTQFEKAFLRM 441
|
|
| TIGR_CMR|SPO_A0318 SPO_A0318 "methionine gamma-lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 134/374 (35%), Positives = 202/374 (54%)
Query: 54 EH-GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
+H G + + ++TF E MFAGE R IYSR NPT+ L +++A LE
Sbjct: 20 DHEGALTPPLHLTSTFAFETAEAGGEMFAGE----RQGHIYSRISNPTLDLLEQRIATLE 75
Query: 113 GTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172
G EA +SGM AI++VL L S G V+ +TLYG T + + H + +T T VD+
Sbjct: 76 GAEAGLALSSGMGAITAVLWTLLSPGDEVIVDKTLYGCTFSYMRHGLAK-WGVTITHVDL 134
Query: 173 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS 231
+D E + +AI +T+V+YFE+ +NP + + +I +S +AH +VVVDNT++ P +
Sbjct: 135 TDPENLKTAI-SDKTRVVYFETPANPNMRLVDIAAVSEIAHGASASVVVDNTYATPYLTR 193
Query: 232 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 291
P +GAD+V+HS +K++ G D++AG V G A ++ + L+ G + G M P A
Sbjct: 194 PIEMGADIVLHSATKYLGGHGDVVAGLVVGGAEQISEIR-LY-GMKDMTGAVMAPFNAML 251
Query: 292 LSERIPHLGLRMKEHCHRALIFARRMKK---LGLKVLYPGLEDHPHHELLKSMANKEYGF 348
+ + L LRM HC A + A + +G +V +PGL H L AN++
Sbjct: 252 ILRGLKTLALRMDRHCASAQVVAEWLAAHPAVG-EVHFPGLTSFSQHAL----ANQQMAQ 306
Query: 349 -GGLLCLDMETEEKANR-LMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKA 406
G ++ +++ A R +MN L A+ AVSLG ETL+ EE+A
Sbjct: 307 PGAMIAFELKGGMDAGRAMMNRLNMIAR----AVSLGDAETLIQHPASMTHSTYTPEERA 362
Query: 407 LAGISAGLVRMSVG 420
GIS GLVR+SVG
Sbjct: 363 EHGISDGLVRLSVG 376
|
|
| UNIPROTKB|Q8EG02 mdeA "Methionine gamma-lyase MdeA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 136/394 (34%), Positives = 207/394 (52%)
Query: 50 HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMA 109
HE G + + +ATF + FAG P +IY+R NPTV L R+MA
Sbjct: 20 HEREAFGSLVTPLYQTATFVFDSAQQGGERFAGN-EPG---YIYTRLGNPTVAELERKMA 75
Query: 110 ALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 169
LE EAA TASGM A+S+ L+ G H+VA+ +YG T AL+T+ F R I T
Sbjct: 76 ILERAEAAAATASGMGAVSAALLANLQIGDHLVASNAVYGCTFALMTNQFARF-GIEVTL 134
Query: 170 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL 228
VD SD E++ AI + TKV++ E+ NP L V ++ ++ +A +T +VDNTF +PL
Sbjct: 135 VDFSDVELIERAI-KPNTKVIFCETPVNPHLQVFDLSAIAAIAKRHSLTSIVDNTFMTPL 193
Query: 229 VLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPK 287
+ P LG DVVVHS +K+++G D+IAG VCG A L ++ L +G M+P
Sbjct: 194 LQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVKYEI----LKDIGAVMSPH 249
Query: 288 VAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMANKE 345
A+ + + L +R++ HC A A +++ +V YPGL+ H H + +
Sbjct: 250 DAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAVTRVYYPGLKSHSGHRFIGQQMRRA 309
Query: 346 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEK 405
GG++ ++ + + M ++ N F +AVSLG E+L+ + E +
Sbjct: 310 ---GGVIAFELAAD--FTQAMAFVGNLKLFS-IAVSLGDAESLIQHPASMTHSPYSPEAR 363
Query: 406 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439
A AGI L+R+SVG L D + +AL+ +
Sbjct: 364 AAAGIGDNLLRISVG-LEDCDDIIADLSQALAAL 396
|
|
| TIGR_CMR|SO_1812 SO_1812 "methionine gamma-lyase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 136/394 (34%), Positives = 207/394 (52%)
Query: 50 HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMA 109
HE G + + +ATF + FAG P +IY+R NPTV L R+MA
Sbjct: 20 HEREAFGSLVTPLYQTATFVFDSAQQGGERFAGN-EPG---YIYTRLGNPTVAELERKMA 75
Query: 110 ALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 169
LE EAA TASGM A+S+ L+ G H+VA+ +YG T AL+T+ F R I T
Sbjct: 76 ILERAEAAAATASGMGAVSAALLANLQIGDHLVASNAVYGCTFALMTNQFARF-GIEVTL 134
Query: 170 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL 228
VD SD E++ AI + TKV++ E+ NP L V ++ ++ +A +T +VDNTF +PL
Sbjct: 135 VDFSDVELIERAI-KPNTKVIFCETPVNPHLQVFDLSAIAAIAKRHSLTSIVDNTFMTPL 193
Query: 229 VLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPK 287
+ P LG DVVVHS +K+++G D+IAG VCG A L ++ L +G M+P
Sbjct: 194 LQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVKYEI----LKDIGAVMSPH 249
Query: 288 VAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMANKE 345
A+ + + L +R++ HC A A +++ +V YPGL+ H H + +
Sbjct: 250 DAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAVTRVYYPGLKSHSGHRFIGQQMRRA 309
Query: 346 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEK 405
GG++ ++ + + M ++ N F +AVSLG E+L+ + E +
Sbjct: 310 ---GGVIAFELAAD--FTQAMAFVGNLKLFS-IAVSLGDAESLIQHPASMTHSPYSPEAR 363
Query: 406 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439
A AGI L+R+SVG L D + +AL+ +
Sbjct: 364 AAAGIGDNLLRISVG-LEDCDDIIADLSQALAAL 396
|
|
| TIGR_CMR|CPS_1705 CPS_1705 "methionine gamma-lyase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 119/390 (30%), Positives = 216/390 (55%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
+ G + + ++TF + FAGE + +IY+R NPT L +++AA+E
Sbjct: 23 QFGSLATPLYQTSTFIFDNAQQGGDRFAGE----SEGYIYTRLGNPTTRQLEQRVAAMEC 78
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
+ A TA+GM+A+S+ L+ +G H+++++ +YG + AL+ H + NI TFVD++
Sbjct: 79 MDDAAATATGMAAVSAALLTNLQAGDHMISSKAVYGCSFALMNHMLKKF-NIEVTFVDMT 137
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
+ + + +AI + TK+++ E+ NP L V ++ ++ +A + +VDNTF +P++ P
Sbjct: 138 EPDNIKAAIKEN-TKLVFLETPINPNLVVLDLEKICAIAKAHNLLSIVDNTFLTPVLQQP 196
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
A+ GAD+VVHS +K+++G D++AG VC ++N ++ L +G T++P A+ +
Sbjct: 197 AKFGADIVVHSATKYLNGHGDVVAGVVCANFEMIN---EIKMTTLKDIGATISPHDAWLI 253
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 350
+ L +RM HC A A +++ + +V YPGL+ H + K + N+ GG
Sbjct: 254 MRGLKTLPIRMDRHCSNAQTVAEFLEQHPMVDEVYYPGLKSHSGN---KFVGNQMKAAGG 310
Query: 351 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGI 410
++ ++ T+ + ++ F +AVSLG E+L+ EE+A AGI
Sbjct: 311 VIAFELNTDLTGGK--TFIDAMELFS-IAVSLGDAESLIQHPASMTHSPYTPEERADAGI 367
Query: 411 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440
S L+R+SVG L +D S +AL +++
Sbjct: 368 SDSLIRISVG-LENVDDIISDLTQALEKVK 396
|
|
| UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 123/332 (37%), Positives = 184/332 (55%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
YSR NPT L +A LE A + SGM+AI++ +M L S G HV+ +YGGT+
Sbjct: 44 YSRTGNPTRAALEEMIAVLENGHAGFAFGSGMAAITATIM-LFSKGDHVILTDDVYGGTY 102
Query: 153 ALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212
++T R I TFVD ++ E V AI + TK +Y E+ +NP L + +I ++S LA
Sbjct: 103 RVITKVLNRF-GIEHTFVDTTNLEEVEEAI-RPNTKAIYVETPTNPLLKITDIKKISTLA 160
Query: 213 HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 271
+KG+ ++DNTF +P SP LGAD+V+HS +K++ G +D++AG V N D
Sbjct: 161 KEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVV--VNSPQLAED 218
Query: 272 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH--CHRALI-FARRMKKLGLKVLYPG 328
LH G + P+ +F L + LG+RM+EH RA+ F K+ KV YPG
Sbjct: 219 LHF-VQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVN-KVYYPG 276
Query: 329 LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL 388
L H +HEL AN GFG ++ D+++EE N+++ LQ + +A SLG E+L
Sbjct: 277 LASHQNHELATEQAN---GFGAIISFDVDSEETLNKVLERLQYFT----LAESLGAVESL 329
Query: 389 MXXXXXXXXXELNAEEKALAGISAGLVRMSVG 420
+ + A+ + GI+ L+R+SVG
Sbjct: 330 ISIPSQMTHASIPADRRKELGITDTLIRISVG 361
|
|
| TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 123/332 (37%), Positives = 184/332 (55%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
YSR NPT L +A LE A + SGM+AI++ +M L S G HV+ +YGGT+
Sbjct: 44 YSRTGNPTRAALEEMIAVLENGHAGFAFGSGMAAITATIM-LFSKGDHVILTDDVYGGTY 102
Query: 153 ALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212
++T R I TFVD ++ E V AI + TK +Y E+ +NP L + +I ++S LA
Sbjct: 103 RVITKVLNRF-GIEHTFVDTTNLEEVEEAI-RPNTKAIYVETPTNPLLKITDIKKISTLA 160
Query: 213 HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 271
+KG+ ++DNTF +P SP LGAD+V+HS +K++ G +D++AG V N D
Sbjct: 161 KEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVV--VNSPQLAED 218
Query: 272 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH--CHRALI-FARRMKKLGLKVLYPG 328
LH G + P+ +F L + LG+RM+EH RA+ F K+ KV YPG
Sbjct: 219 LHF-VQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVN-KVYYPG 276
Query: 329 LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL 388
L H +HEL AN GFG ++ D+++EE N+++ LQ + +A SLG E+L
Sbjct: 277 LASHQNHELATEQAN---GFGAIISFDVDSEETLNKVLERLQYFT----LAESLGAVESL 329
Query: 389 MXXXXXXXXXELNAEEKALAGISAGLVRMSVG 420
+ + A+ + GI+ L+R+SVG
Sbjct: 330 ISIPSQMTHASIPADRRKELGITDTLIRISVG 361
|
|
| UNIPROTKB|Q4KA19 mdeA "Methionine gamma-lyase" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 121/356 (33%), Positives = 184/356 (51%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
FIYSR NPTV L ++ LE E+A +SGM+AIS VL G VV+ + YGG
Sbjct: 62 FIYSRMSNPTVQTLEAKLQDLENAESAVAFSSGMAAISGVLYSFLRHGQRVVSTKDSYGG 121
Query: 151 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210
T+ + F PR + T + D + + + I +G +LY E+ +NPTL + +I L
Sbjct: 122 TNKIFEEFLPRM-GVAVTLCETFDQQQIEAEIAKG-CDLLYLETPTNPTLKIVDIQRLVA 179
Query: 211 LAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 269
A G VV DNTF+ PL +P LG DVV+HS +KF+SG D++ G CG L++ +
Sbjct: 180 AAKQVGALVVADNTFATPLNQNPLALGVDVVIHSATKFLSGHGDVLGGVACGSEALMSQV 239
Query: 270 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM--KKLGLKVLYP 327
+ + G +++P A+ + I L LRM++ H A A+ + + L V YP
Sbjct: 240 RHYRE----INGASLDPFSAYLIIRGIKTLALRMRQQQHSAAQLAQFLLNEPLVEAVNYP 295
Query: 328 GLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYE 386
GL +HP+H + + GFG ++ + + +L+ L+ YA A +LG E
Sbjct: 296 GLPNHPNHAVACAQMR---GFGAIVSFVLVGGMDSVKQLLPRLR-YAH---CAGNLGAVE 348
Query: 387 TLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442
T+ E EE+ GIS GLVR+SVG T D + ++A + ++ S
Sbjct: 349 TIYGPARTTSHVENTLEERQALGISEGLVRISVGIEDT-DDLLADLQQAFAWLRQS 403
|
|
| TIGR_CMR|CBU_2025 CBU_2025 "cystathionine beta-lyase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 118/374 (31%), Positives = 190/374 (50%)
Query: 67 TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSA 126
T VM P +A + + YSR NPT R +A LE + + ASGM+A
Sbjct: 26 TGAVMTPIYTASTYAQKSPGVHQGYEYSRSQNPTRFAYERCVADLESGQHGFAFASGMAA 85
Query: 127 ISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGR 186
+++L +L G HVV +YGG++ L + R+ ++ +FVD +D V A+ +
Sbjct: 86 TATIL-ELLQPGDHVVVMDDVYGGSYRLFENVRKRSAGLSFSFVDFTDENKVREAVT-AK 143
Query: 187 TKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSIS 245
TK+L+ ES SNP L + ++ +++ +A +K + V DNTF+ P++ P LG D+V HS +
Sbjct: 144 TKMLWVESPSNPRLKIVDLAKIAEIAKEKNIIAVADNTFATPIIQRPLELGFDIVTHSAT 203
Query: 246 KFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMK 304
K+++G +DII G AV G + + Q A+ G P +F + + L +RM+
Sbjct: 204 KYLNGHSDIIGGVAVVGDNKTLAEQLKYLQNAI---GAIAAPFDSFMVLRGLKTLAIRME 260
Query: 305 EHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 362
HC A+ A+ ++K +V YPGL HP H + K Y FGG++ ++++ +
Sbjct: 261 RHCENAMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMR--Y-FGGMISVELKCD--L 315
Query: 363 NRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYL 422
N L+ Q +A SLG E+L+ + E+ GI+ G +R+SVG
Sbjct: 316 NETKKVLER-CQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGIE 374
Query: 423 GTLDQRWSQFEKAL 436
D R E AL
Sbjct: 375 AITDLR-HDLEAAL 387
|
|
| TAIR|locus:2102072 MTO1 "METHIONINE OVERACCUMULATION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 109/334 (32%), Positives = 179/334 (53%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
F Y R+ NPT + L +++ALEG E+ ASGM A + +L+ L +GGH+V Y
Sbjct: 224 FEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCYRK 283
Query: 151 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210
T + +F P+ IT T +D +D + +A+ + + + + ES +NP L +I +S+
Sbjct: 284 TRIFMENFLPKL-GITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVSK 342
Query: 211 LAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 269
+ H +G V +D TF+ PL LGAD+VVHS +K+I G D++AG +CG LV+ +
Sbjct: 343 ICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSEI 402
Query: 270 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK---KLGLKVLY 326
+LH +LG T+NP A+ + + L LR+++ A A ++ K+ V Y
Sbjct: 403 RNLHH----VLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVS-HVYY 457
Query: 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386
PGL HP HEL K GFGG++ +++ + + + ++ + + ++A S G E
Sbjct: 458 PGLPSHPEHELAKRQMT---GFGGVVSFEIDGDIETT--IKFVDSL-KIPYIAPSFGGCE 511
Query: 387 TLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 420
+++ +L EE+ GI LVR S G
Sbjct: 512 SIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFG 545
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P13254 | MEGL_PSEPU | 4, ., 4, ., 1, ., 1, 1 | 0.3778 | 0.8187 | 0.9195 | yes | no |
| Q9ZMW7 | METB_HELPJ | 2, ., 5, ., 1, ., 4, 8 | 0.3067 | 0.8076 | 0.95 | yes | no |
| Q9SGU9 | MGL_ARATH | 4, ., 4, ., 1, ., 1, 1 | 0.7711 | 0.9686 | 0.9818 | yes | no |
| P50125 | CYSD_EMENI | 2, ., 5, ., 1, ., 4, 9 | 0.3075 | 0.8165 | 0.8352 | yes | no |
| P0A4K2 | METC_LACLA | 4, ., 4, ., 1, ., 8 | 0.3118 | 0.8187 | 0.9631 | yes | no |
| A2RM21 | METC_LACLM | 4, ., 4, ., 1, ., 8 | 0.3118 | 0.8187 | 0.9631 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 447 | |||
| PLN02242 | 418 | PLN02242, PLN02242, methionine gamma-lyase | 0.0 | |
| cd00614 | 369 | cd00614, CGS_like, CGS_like: Cystathionine gamma-s | 1e-131 | |
| COG0626 | 396 | COG0626, MetC, Cystathionine beta-lyases/cystathio | 1e-102 | |
| pfam01053 | 382 | pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP | 2e-99 | |
| COG2873 | 426 | COG2873, MET17, O-acetylhomoserine sulfhydrylase [ | 8e-81 | |
| TIGR01328 | 391 | TIGR01328, met_gam_lyase, methionine gamma-lyase | 1e-79 | |
| PRK06234 | 400 | PRK06234, PRK06234, methionine gamma-lyase; Provis | 1e-77 | |
| PRK08133 | 390 | PRK08133, PRK08133, O-succinylhomoserine sulfhydry | 1e-75 | |
| PRK08249 | 398 | PRK08249, PRK08249, cystathionine gamma-synthase; | 5e-75 | |
| TIGR01326 | 418 | TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | 6e-73 | |
| PRK07503 | 403 | PRK07503, PRK07503, methionine gamma-lyase; Provis | 6e-71 | |
| TIGR01325 | 381 | TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul | 6e-68 | |
| PRK07671 | 377 | PRK07671, PRK07671, cystathionine beta-lyase; Prov | 1e-66 | |
| PRK08574 | 385 | PRK08574, PRK08574, cystathionine gamma-synthase; | 1e-63 | |
| PRK08064 | 390 | PRK08064, PRK08064, cystathionine beta-lyase; Prov | 1e-58 | |
| PRK07811 | 388 | PRK07811, PRK07811, cystathionine gamma-synthase; | 5e-58 | |
| PRK08134 | 433 | PRK08134, PRK08134, O-acetylhomoserine aminocarbox | 5e-58 | |
| PRK06767 | 386 | PRK06767, PRK06767, methionine gamma-lyase; Provis | 3e-56 | |
| PRK06460 | 376 | PRK06460, PRK06460, hypothetical protein; Provisio | 2e-55 | |
| PRK05939 | 397 | PRK05939, PRK05939, hypothetical protein; Provisio | 3e-54 | |
| PRK07504 | 398 | PRK07504, PRK07504, O-succinylhomoserine sulfhydry | 5e-53 | |
| PRK08248 | 431 | PRK08248, PRK08248, O-acetylhomoserine aminocarbox | 6e-53 | |
| PRK05968 | 389 | PRK05968, PRK05968, hypothetical protein; Provisio | 1e-52 | |
| PRK07810 | 403 | PRK07810, PRK07810, O-succinylhomoserine sulfhydry | 2e-52 | |
| PRK06176 | 380 | PRK06176, PRK06176, cystathionine gamma-synthase/c | 4e-52 | |
| TIGR01329 | 378 | TIGR01329, cysta_beta_ly_E, cystathionine beta-lya | 4e-52 | |
| TIGR02080 | 382 | TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t | 6e-50 | |
| PRK07812 | 436 | PRK07812, PRK07812, O-acetylhomoserine aminocarbox | 7e-50 | |
| PRK06084 | 425 | PRK06084, PRK06084, O-acetylhomoserine aminocarbox | 2e-48 | |
| PRK06434 | 384 | PRK06434, PRK06434, cystathionine gamma-lyase; Val | 1e-47 | |
| PRK08045 | 386 | PRK08045, PRK08045, cystathionine gamma-synthase; | 7e-47 | |
| PRK05994 | 427 | PRK05994, PRK05994, O-acetylhomoserine aminocarbox | 2e-44 | |
| PRK05613 | 437 | PRK05613, PRK05613, O-acetylhomoserine aminocarbox | 6e-43 | |
| PRK08247 | 366 | PRK08247, PRK08247, cystathionine gamma-synthase; | 7e-42 | |
| PRK08776 | 405 | PRK08776, PRK08776, cystathionine gamma-synthase; | 9e-39 | |
| PRK08861 | 388 | PRK08861, PRK08861, cystathionine gamma-synthase; | 5e-38 | |
| PRK07049 | 427 | PRK07049, PRK07049, methionine gamma-lyase; Valida | 2e-37 | |
| PRK07269 | 364 | PRK07269, PRK07269, cystathionine gamma-synthase; | 4e-37 | |
| PRK06702 | 432 | PRK06702, PRK06702, O-acetylhomoserine aminocarbox | 3e-36 | |
| PLN02509 | 464 | PLN02509, PLN02509, cystathionine beta-lyase | 7e-36 | |
| PRK07582 | 366 | PRK07582, PRK07582, cystathionine gamma-lyase; Val | 2e-31 | |
| TIGR01324 | 377 | TIGR01324, cysta_beta_ly_B, cystathionine beta-lya | 1e-29 | |
| PRK07050 | 394 | PRK07050, PRK07050, cystathionine beta-lyase; Prov | 4e-25 | |
| PRK09028 | 394 | PRK09028, PRK09028, cystathionine beta-lyase; Prov | 1e-23 | |
| PRK05967 | 395 | PRK05967, PRK05967, cystathionine beta-lyase; Prov | 2e-21 | |
| PRK08114 | 395 | PRK08114, PRK08114, cystathionine beta-lyase; Prov | 2e-18 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 3e-08 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 6e-06 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 1e-05 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 1e-04 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 0.002 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 0.003 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 0.003 |
| >gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 832 bits (2150), Expect = 0.0
Identities = 353/416 (84%), Positives = 381/416 (91%), Gaps = 1/416 (0%)
Query: 27 TKKSMLSTAAA-WEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELG 85
++K S A + EDPAAALASARHEFGEHGGVNMSIEASATFTVMEP+TMRRMF+GELG
Sbjct: 3 SEKEKKSPAESKEEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELG 62
Query: 86 PDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAAR 145
PDRDF+IYSRHFNPTVLNL RQMAALEGTEAAYCTASGMSAISSVL+QLCSSGGHVVA+
Sbjct: 63 PDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASN 122
Query: 146 TLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANI 205
TLYGGTHALL HF PR CNITTTFVDI+D E V A+V G+TKVLYFESISNPTL VA+I
Sbjct: 123 TLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADI 182
Query: 206 PELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL 265
PEL+R+AH+KGVTVVVDNTF+P+VLSPARLGADVVVHSISKFISGGADIIAGAVCGPA L
Sbjct: 183 PELARIAHEKGVTVVVDNTFAPMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAEL 242
Query: 266 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL 325
VNSMMDLH GALMLLGPTMNPKVAFELSER+PHL LRMKEHC RA+ +A+RMK+LGLKV+
Sbjct: 243 VNSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELGLKVI 302
Query: 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 385
YPGLEDHP H LLKSMANK YGFGGLLCLDM+TEE+ANRLM YLQN QFGFMAVSLGYY
Sbjct: 303 YPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVSLGYY 362
Query: 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441
ETLMSCSGSSTSSEL+ EEKA AGIS GLVRMSVGY GTL+QRWSQFEKALS M+
Sbjct: 363 ETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTGTLEQRWSQFEKALSAMKL 418
|
Length = 418 |
| >gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Score = 383 bits (987), Expect = e-131
Identities = 155/386 (40%), Positives = 220/386 (56%), Gaps = 21/386 (5%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G V I ++TF P +FA +IYSR NPTV L +++AALEG E
Sbjct: 1 GAVAPPIYQTSTFVFPSPAEAADLFALR----EGGYIYSRIGNPTVDALEKKLAALEGGE 56
Query: 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175
AA +SGM+AIS+VL+ L +G HVVA+ LYGGT+ L P+ I TFVD D
Sbjct: 57 AALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLG-IEVTFVDPDDP 115
Query: 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPAR 234
E + +AI + TK++Y ES +NPTL V +I ++ LAH+ G +VVDNTF +P + P
Sbjct: 116 EALEAAI-KPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLE 174
Query: 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 294
LGAD+VVHS +K+I G +D+IAG V G + + + A LG ++P A+ L
Sbjct: 175 LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLA---LGTILSPFDAWLLLR 231
Query: 295 RIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352
+ L LRM+ H AL A ++K +V YPGL HP HEL K + G+GG+
Sbjct: 232 GLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMS---GYGGVF 288
Query: 353 CLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 411
+++ E A + +N L + +AVSLG E+L+ S T S+L EE+A AGI+
Sbjct: 289 SFELKGGLEAAKKFLNAL----KLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGIT 344
Query: 412 AGLVRMSVGYLGTLDQRWSQFEKALS 437
GLVR+SVG + ++ + E+AL
Sbjct: 345 PGLVRLSVG-IEDVEDLIADLEQALK 369
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369 |
| >gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 309 bits (794), Expect = e-102
Identities = 149/416 (35%), Positives = 216/416 (51%), Gaps = 30/416 (7%)
Query: 28 KKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPD 87
K L+T + R G VN I ++TF FAGE G
Sbjct: 4 AKLSLTTRLVH--------AGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGG- 54
Query: 88 RDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTL 147
+ YSR NPT L +A LEG E A+ +SGM+AIS+ L+ L +G HV+ L
Sbjct: 55 ---YDYSRTGNPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDL 111
Query: 148 YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 207
YGGT+ L + + TFVD D E + +AI + TK+++ E+ SNP L V +IP
Sbjct: 112 YGGTYRLFEKILQKF-GVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPA 170
Query: 208 LSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 266
++RLA G VVVDNTF +P++ P LGAD+VVHS +K++ G +D++ G V P
Sbjct: 171 IARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTP---- 226
Query: 267 NSMMD--LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-- 322
N + L G ++P A+ L + L LRM+ H AL A +
Sbjct: 227 NEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVK 286
Query: 323 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL 382
KV YPGL HP HEL K G+GGL +++ EE A + ++ L+ + +A SL
Sbjct: 287 KVYYPGLPSHPGHELAKRQMT---GYGGLFSFELKNEEAAKKFLDSLKLFK----LAESL 339
Query: 383 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438
G E+L+S + T + + EE+A AGI+ GLVR+SVG L ++ + E+AL++
Sbjct: 340 GGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVG-LEDVEDLIADLEQALAK 394
|
Length = 396 |
| >gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme | Back alignment and domain information |
|---|
Score = 302 bits (776), Expect = 2e-99
Identities = 144/373 (38%), Positives = 212/373 (56%), Gaps = 28/373 (7%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
G V + I ++T+ +T+ +FAGE G + YSR NPT L ++AALEG
Sbjct: 15 TGAVVVPIYLTSTYVF---DTVEALFAGEHGG----YDYSRSGNPTRDALEERIAALEGG 67
Query: 115 EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174
EAA +SGM+AI + L+ L +G HVVA LYGGT+ L PR I TFVD SD
Sbjct: 68 EAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFG-IEVTFVDPSD 126
Query: 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPA 233
+ + +AI + TK ++ E+ +NP L V +I ++++A G VVVDNTF SP + P
Sbjct: 127 LDALEAAI-KPNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFASPYLQRPL 185
Query: 234 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML---LGPTMNPKVAF 290
LGAD+VVHS +K+I G +D++ G V VN +L + L G ++P A+
Sbjct: 186 ELGADIVVHSATKYIGGHSDVVGGVVV-----VNGREELAKRLRFLQNATGAVLSPFDAW 240
Query: 291 ELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGF 348
L + LGLRM+ H AL A +++ KV YPGL HP HEL K + GF
Sbjct: 241 LLLRGLKTLGLRMERHQENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQMS---GF 297
Query: 349 GGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 407
GG+L +++ E A++ ++ L+ ++ +A SLG E+L+S + T + + EE+
Sbjct: 298 GGMLSFELKGGLEAASKFLDNLKLFS----LAESLGGVESLISHPATMTHASIPPEEREA 353
Query: 408 AGISAGLVRMSVG 420
AGI+ GL+R+SVG
Sbjct: 354 AGITDGLIRLSVG 366
|
This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382 |
| >gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 8e-81
Identities = 126/409 (30%), Positives = 195/409 (47%), Gaps = 51/409 (12%)
Query: 48 ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQ 107
A E G + I + ++ + + +F + IY+R NPT L +
Sbjct: 15 AGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLK----EPGNIYTRIMNPTTDVLEER 70
Query: 108 MAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT 167
+AALEG AA ASG +AI+ ++ L +G ++V++ LYGGT+ L +H R I
Sbjct: 71 IAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRL-GIEV 129
Query: 168 TFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-S 226
FVD D E +AI TK ++ E+I NP L V +I ++ +AH GV ++VDNTF +
Sbjct: 130 RFVDPDDPENFEAAI-DENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFAT 188
Query: 227 PLVLSPARLGADVVVHSISKFISGGADIIAGAV-----------------CGPAN----- 264
P + P GAD+VVHS +K+I G I G + P
Sbjct: 189 PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGL 248
Query: 265 -----LVNSMMDLHQGALML--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM 317
N+ + +L LG T++P AF L + + L LRM+ HC AL A +
Sbjct: 249 VYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFL 308
Query: 318 K---KLGLKVLYPGLEDHPHHELLKSMANKEY--GFGGLLCLDMET-EEKANRLMNYLQN 371
+ K+ V YPGL HP+H L A K G G +L ++ E + ++ L+
Sbjct: 309 ENHPKVA-WVNYPGLASHPYHAL----AKKYLPKGAGAVLTFGVKGGYEAGKKFIDALK- 362
Query: 372 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
++G +L+ S+T +L+ EE+A AG++ L+R+SVG
Sbjct: 363 LFS---HLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVG 408
|
Length = 426 |
| >gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 1e-79
Identities = 138/390 (35%), Positives = 217/390 (55%), Gaps = 20/390 (5%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
+ G + I ++TF E FAG+ +IYSR NPTV NL ++A LEG
Sbjct: 18 QFGALTPPIYQTSTFVFDSCEQGGNRFAGQ----ESGYIYSRLGNPTVSNLEGRIAFLEG 73
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
TEAA T+SGM AI++ L+ + +G H+++ LYG T ALL H + I F++++
Sbjct: 74 TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKF-GIQVDFINMA 132
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
E V + I + TK++YFE+ +NPT+ + ++ + R AH +GV V+VDNTF +P++ +P
Sbjct: 133 IPEEVKAHI-KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNP 191
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LG DVVVHS +K+I G D++AG +CG A L+ + + + G ++P A+ +
Sbjct: 192 VALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMT--GSVISPFDAWLI 249
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 350
+ L +RMK H A+ A +K KV YPG EDHP H++ GG
Sbjct: 250 LRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRM---GGG 306
Query: 351 LLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 409
++ +++ A +L+N L+ +AVSLG ETL+ S T + + EE+ AG
Sbjct: 307 MITFELKGGFAGAKKLLNNLKLIR----LAVSLGDAETLIQHPASMTHAVVPKEEREAAG 362
Query: 410 ISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439
I+ G++R+SVG L D + ++AL +
Sbjct: 363 ITDGMIRLSVG-LEDADDLIADLKQALDAL 391
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391 |
| >gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 1e-77
Identities = 152/392 (38%), Positives = 216/392 (55%), Gaps = 22/392 (5%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
+ G + I ++TF E R FAGE +IYSR NPT + ++A LEG
Sbjct: 23 QFGSLATPIYQTSTFIFDSAEQGGRRFAGE----ESGYIYSRLGNPTSTEVENKLALLEG 78
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
EAA ASGM AISS L +G HVVA+ TLYG T ALL H R + TFVD S
Sbjct: 79 GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRY-GVEVTFVDTS 137
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH--DKGVTVVVDNTF-SPLVL 230
+ E V +A+ + TKV+Y E+ +NPTL V +I +S +AH +K V VDNTF +P +
Sbjct: 138 NLEEVRNAL-KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQ 196
Query: 231 SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF 290
P +LGADVVVHS +K+++G D+IAG V G +N + G + G + P AF
Sbjct: 197 RPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVK--LFGIKDMTGSVIGPFEAF 254
Query: 291 ELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGF 348
+ + L +RM++HC A+ A+ ++ KV YPGLE ++EL K +
Sbjct: 255 LIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSL---P 311
Query: 349 GGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 407
G ++ +++ E+ +MN + + +AVSLG ETL+ S T S AEE+
Sbjct: 312 GAMISFELKGGVEEGKVVMNNV----KLATLAVSLGDAETLIQHPASMTHSPYTAEERKE 367
Query: 408 AGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439
AGIS GLVR+SVG L +D + ++AL +
Sbjct: 368 AGISDGLVRLSVG-LEDVDDIIADLKQALDLI 398
|
Length = 400 |
| >gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 1e-75
Identities = 135/378 (35%), Positives = 210/378 (55%), Gaps = 28/378 (7%)
Query: 49 RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQM 108
R FGEH ++ +++F FAGE IYSR NPTV ++
Sbjct: 18 RSPFGEHS---EALFLTSSFVFESAAEAAARFAGE----EPGNIYSRFTNPTVTMFQERL 70
Query: 109 AALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 168
AALEG EA TASGM+AI +V+M L +G HVV++R+L+G T +L F R I TT
Sbjct: 71 AALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF-GIETT 129
Query: 169 FVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP 227
FVD++D + +A V+ TK+ + E+ SNP +A+I L+ +AH G +VVDN F +P
Sbjct: 130 FVDLTDLDAWRAA-VRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTP 188
Query: 228 LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK 287
+ P +LGADVV+HS +K++ G ++ GAV G L+ + G L GPT++P
Sbjct: 189 ALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVF----GFLRTAGPTLSPF 244
Query: 288 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKE 345
A+ + + L LRM+ H AL A ++ +V YPGL HP HEL K ++
Sbjct: 245 NAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKR---QQ 301
Query: 346 YGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVS--LGYYETLMSCSGSSTSSELNA 402
G G ++ +++ E A R+++ + ++++ LG +T ++ ++T L+
Sbjct: 302 KGGGAIVSFEVKGGREAAWRVIDATR------LISITANLGDTKTTITHPATTTHGRLSP 355
Query: 403 EEKALAGISAGLVRMSVG 420
E +A AGI+ GL+R++VG
Sbjct: 356 EARAAAGITEGLIRVAVG 373
|
Length = 390 |
| >gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (613), Expect = 5e-75
Identities = 134/415 (32%), Positives = 213/415 (51%), Gaps = 30/415 (7%)
Query: 32 LSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFF 91
+ T A W + E+ +G + + S + + + + LG +
Sbjct: 9 VGTKAVW--------AGEKEYLPYGATQVPVVLSVAYGY---DDIDEWYDVALG-KKPGH 56
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151
IYSR+ NPTV ++ LEG EAA ++GM+AIS+ L G VV+ + YGGT
Sbjct: 57 IYSRNTNPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGT 116
Query: 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211
+ + T F PR + T + DHE + + I +G +LY E+ +NPTL + +I L+
Sbjct: 117 NKIFTEFLPRM-GVDVTLCETGDHEQIEAEIAKG-CDLLYLETPTNPTLKIVDIERLAAA 174
Query: 212 AHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 270
A G VVVDNTF +P+ +P LGAD+V+HS +KF+SG AD + G VCG L+ +
Sbjct: 175 AKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVY 234
Query: 271 DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPG 328
+ + G TM+P A+ + + L LR+++ A+ A+ ++ V YPG
Sbjct: 235 HYRE----INGATMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPG 290
Query: 329 LEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYET 387
LE HP+HE+ K+ GFGG+L ++ + RL+ L ++ A +LG ET
Sbjct: 291 LETHPNHEIAKAQMR---GFGGILSFVLKGGMDTVKRLLPKL----RYAHRAANLGAVET 343
Query: 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442
+ + +++ E EE+A GI GLVR+SVG T D + E+A + ++
Sbjct: 344 IYGPARTTSHVENTLEERAALGIPEGLVRISVGIEDTEDL-IADLEQAFAHLESE 397
|
Length = 398 |
| >gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 6e-73
Identities = 126/399 (31%), Positives = 192/399 (48%), Gaps = 46/399 (11%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFA-GELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
G + I + ++ E +F E G IYSR NPT L +++AALEG
Sbjct: 17 TGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGN-----IYSRLMNPTTDVLEQRIAALEG 71
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
AA ASG +AI+ ++ L +G ++V++ LYGGT+ L H R I FVD
Sbjct: 72 GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRL-GIEVRFVDPD 130
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D E AI + TK ++ E+I NP + V +I ++ +AH GV ++VDNTF +P + P
Sbjct: 131 DPEEFEKAIDE-NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRP 189
Query: 233 ARLGADVVVHSISKFISGGADIIAGAV----------------CGPA----------NLV 266
GAD+VVHS +K+I G I G + P
Sbjct: 190 IDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFG 249
Query: 267 NSMMDLHQGALML--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--L 322
N + +L LG ++P AF L + + L LRM+ H AL A ++
Sbjct: 250 NPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVA 309
Query: 323 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVS 381
V YPGL HPHH L K K GFG +L +++ E + ++ L+ + +
Sbjct: 310 WVNYPGLASHPHHALAKKYLPK--GFGAVLSFEIKGGREAGKKFIDALKLASH----LAN 363
Query: 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
+G ++L+ S+T +L+ EE+ AG++ GL+R+SVG
Sbjct: 364 VGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVG 402
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418 |
| >gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 6e-71
Identities = 139/372 (37%), Positives = 194/372 (52%), Gaps = 21/372 (5%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
G + + +ATF E FAGE + YSR NPT+ L ++MA+LEG
Sbjct: 24 HGGALVPPVYLTATFAFPTAEYGAECFAGE----EEGHFYSRISNPTLALLEQRMASLEG 79
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
EAA ASGM AI++ L L G V+ +TLYG T A L H +T VD++
Sbjct: 80 GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEF-GVTVRHVDLT 138
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D + +AI +T+++YFE+ +NP + + +I ++ +AH G VVVDNT+ +P + P
Sbjct: 139 DPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRP 197
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+VVHS +K++ G DI AG V G L + + +G + G M+P AF L
Sbjct: 198 LELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIR--LEGLKDMTGAVMSPFDAFLL 255
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLK-SMANKEYGFG 349
+ L LRM HC A A + + V YPGL H L + MA G
Sbjct: 256 MRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMAL----PG 311
Query: 350 GLLCLDMETEEKANR-LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 408
G++ +++ A R MN LQ +A+ AVSLG E+L S T S EE+A
Sbjct: 312 GMIAFELKGGIAAGRRFMNALQLFAR----AVSLGDAESLAQHPASMTHSTYTPEERAEH 367
Query: 409 GISAGLVRMSVG 420
GIS GLVR+SVG
Sbjct: 368 GISEGLVRLSVG 379
|
Length = 403 |
| >gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Score = 220 bits (563), Expect = 6e-68
Identities = 128/377 (33%), Positives = 199/377 (52%), Gaps = 24/377 (6%)
Query: 48 ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQ 107
R F E ++ ++ + + FAGEL F+YSR+ NPTV +
Sbjct: 10 LRSGFEET---AEALYLTSGYVYDSAAVAAKRFAGEL----PGFVYSRYGNPTVSVFEER 62
Query: 108 MAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT 167
+A LEG EAA TASGM+AI + LM L +G HVVA+R+L+G + + PR + T
Sbjct: 63 LALLEGAEAAVATASGMAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRF-GVQT 121
Query: 168 TFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-S 226
FVD +D +A ++ TK ++ E+ SNP + +I ++ LAH G VVVDN F +
Sbjct: 122 VFVDGTDLSAWEAA-LKPNTKAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDNVFAT 180
Query: 227 PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP 286
PL+ P +LGADVVV+S +K I G ++ GA+ G M + Q L GP M+P
Sbjct: 181 PLLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEY---MDEPVQKLLRHTGPAMSP 237
Query: 287 KVAFELSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMAN 343
A+ L + + L +R++ AL A + V YPGL HP HEL K +
Sbjct: 238 FNAWVLLKGLETLAIRVQHQNASALAIAEWLNGHPSVQ-WVYYPGLPSHPQHELAKRQMS 296
Query: 344 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403
G G ++ D++ + A ++++ ++ ++ +LG ++ ++ ++T + E
Sbjct: 297 ---GGGTVVTFDLDCRQAAFKVLDAMRLVD----ISNNLGDAKSTITHPATTTHRRMGPE 349
Query: 404 EKALAGISAGLVRMSVG 420
E+A AGI GLVR+SVG
Sbjct: 350 ERAAAGIGDGLVRLSVG 366
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381 |
| >gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 1e-66
Identities = 134/338 (39%), Positives = 196/338 (57%), Gaps = 26/338 (7%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
+ YSR NPT L +A LEG A + SGM+AI++V+M L SSG HV+ +YGG
Sbjct: 42 YEYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFSSGDHVILTDDVYGG 100
Query: 151 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210
T+ ++T R I TFVD S+ E V AI + TK +Y E+ +NP L + +I ++S
Sbjct: 101 TYRVMTKVLNRF-GIEHTFVDTSNLEEVEEAI-RPNTKAIYVETPTNPLLKITDIKKIST 158
Query: 211 LAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 269
+A +KG+ +VDNTF P SP LGAD+V+HS +K++ G +D++AG V +VNS
Sbjct: 159 IAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLV-----VVNSP 213
Query: 270 M---DLH--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCH--RALIFARRMKKLGL 322
DLH Q + G + P+ ++ L + LG+RM+EH RA+
Sbjct: 214 ELAEDLHFVQNS---TGGILGPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVN 270
Query: 323 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL 382
KV YPGL HP+HEL K AN GFGG++ D+ +EE AN+++ LQ + +A SL
Sbjct: 271 KVYYPGLPSHPNHELAKEQAN---GFGGMISFDVGSEETANKVLERLQYFT----LAESL 323
Query: 383 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
G E+L+S T + + A+ + GI+ GL+R+SVG
Sbjct: 324 GAVESLISIPSQMTHASIPADRRKELGITDGLIRISVG 361
|
Length = 377 |
| >gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 1e-63
Identities = 113/349 (32%), Positives = 178/349 (51%), Gaps = 19/349 (5%)
Query: 79 MFAGELGP-DRDFFI-YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS 136
GE P DR F + YSR NPT+ L +A LEG A SGM+AIS++ L
Sbjct: 31 RQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLK 90
Query: 137 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196
+G VV YG T LL + + E + AI +GRTK+++ E+++
Sbjct: 91 AGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY---PSTEDIIEAIKEGRTKLVFIETMT 147
Query: 197 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADII 255
NPTL V ++PE+++ A + G +VVDNTF +PL+ P R GAD VVHS++K+I+G D++
Sbjct: 148 NPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVV 207
Query: 256 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFA 314
G + + +L + LG M P A+ L R + L +R + C A+ A
Sbjct: 208 GGVAVAWSGEF--LEELWEWRRR-LGTIMQPFEAY-LVLRGLKTLEVRFERQCRNAMAIA 263
Query: 315 RRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM-ETEEKANRLMNYLQN 371
+ + +V YPGL P+H + K + K+ +GG++ + + + + L
Sbjct: 264 EFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDL-YGGVVSFRVKGGRDAVLKFLRSL-- 320
Query: 372 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
+ + SLG E+L + S +S + E++ GI+ LVR+SVG
Sbjct: 321 --KLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVG 367
|
Length = 385 |
| >gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 1e-58
Identities = 124/389 (31%), Positives = 200/389 (51%), Gaps = 31/389 (7%)
Query: 53 GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
+ G VN+ I ++TF + +T + + YSR NPT L +A LE
Sbjct: 20 KQTGAVNVPIYHASTFHQFDFDTFGK------------YDYSRSGNPTREALEDIIAELE 67
Query: 113 GTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172
G + ASGM+AIS+ + L S G HV+ + +YGGT+ ++T R I TFVD+
Sbjct: 68 GGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRF-GIEHTFVDM 125
Query: 173 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 231
++ E V I + TK+ Y E+ SNP L V +I + +LA G VDNTF +PL+
Sbjct: 126 TNLEEVAQNI-KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQK 184
Query: 232 PARLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF 290
P LGADVV+HS +KF++G +D++AG AV L + L G + + +
Sbjct: 185 PLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNS----FGAVLGVQDCW 240
Query: 291 ELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGF 348
+ + L +R++ A A +++ V YPGL+ H ++ +S A
Sbjct: 241 LVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQAT---SA 297
Query: 349 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 408
G +L +++EE + ++++ + AVSLG E+++S + + + EE+
Sbjct: 298 GAVLSFTLQSEEAVRQFVSHV----KLPVFAVSLGAVESILSYPAKMSHAAMPKEERDER 353
Query: 409 GISAGLVRMSVGYLGTLDQRWSQFEKALS 437
GI+ GL+R+SVG L +D + FE+ALS
Sbjct: 354 GITDGLLRLSVG-LENVDDLIADFEQALS 381
|
Length = 390 |
| >gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 5e-58
Identities = 126/374 (33%), Positives = 178/374 (47%), Gaps = 40/374 (10%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G VN I AS+TF +R + Y+R NPT L Q+AALEG
Sbjct: 29 GAVNPPIYASSTFAQDGVGGLRGGYE-----------YARTGNPTRTALEEQLAALEGGA 77
Query: 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175
+SGM+A +L + G H+V YGGT L+ F R + T VD+SD
Sbjct: 78 YGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTR-WGVEYTPVDLSDL 136
Query: 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPAR 234
+ V +AI RTK+++ E+ +NP L++ +I L+ LAHD G VVVDNTF SP + P
Sbjct: 137 DAVRAAI-TPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPLA 195
Query: 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 294
LGADVVVHS +K+I G +D++ GA+ ++ Q G P A+
Sbjct: 196 LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNG---AGAVPGPFDAYLTLR 252
Query: 295 RIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHEL-LKSMANKEYGFGGL 351
+ L +RM H A A + VLYPGL HP HE+ + M GFGG+
Sbjct: 253 GLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMR----GFGGM 308
Query: 352 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG-----SSTSSELNAEEKA 406
+ + + E+A R + +A SLG E+L+ S+ S+L
Sbjct: 309 VSVRLAGGEEAAR---DFCARTKVFTLAESLGGVESLIEHPSAMTHASTAGSQLE----- 360
Query: 407 LAGISAGLVRMSVG 420
+ LVR+SVG
Sbjct: 361 ---VPDDLVRLSVG 371
|
Length = 388 |
| >gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 5e-58
Identities = 115/361 (31%), Positives = 182/361 (50%), Gaps = 39/361 (10%)
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151
+YSR NPTV L ++AALEG A TASG +A+ + L +G H+VA+ LYGG+
Sbjct: 57 VYSRISNPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGS 116
Query: 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211
H LL + R I TTFV D + +AI + T++L+ E++ NP L V +IP ++ +
Sbjct: 117 HNLLHYTLRRF-GIETTFVKPGDIDGWRAAI-RPNTRLLFGETLGNPGLEVLDIPTVAAI 174
Query: 212 AHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV----------- 259
AH+ GV ++VD+TF +P +L P GAD+V HS +KF+ G I G +
Sbjct: 175 AHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEAS 234
Query: 260 ------CGPANLVNSMMDLHQ---GALML---------LGPTMNPKVAFELSERIPHLGL 301
P + M+ + A +L G ++P A++L + I L L
Sbjct: 235 GKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPL 294
Query: 302 RMKEHCH--RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 359
RM+ H R ++ +V +P LE HP H L K + + G G + D++
Sbjct: 295 RMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPR--GAGSVFSFDLKGG 352
Query: 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 419
A R ++++ F +A ++G +L+ S+T ++A A AGI G +R+S+
Sbjct: 353 RAAGR--KFIESLKLFSHLA-NVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIRLSI 409
Query: 420 G 420
G
Sbjct: 410 G 410
|
Length = 433 |
| >gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 3e-56
Identities = 119/392 (30%), Positives = 188/392 (47%), Gaps = 28/392 (7%)
Query: 50 HEFGEH-GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQM 108
+ EH G + + ++TFT + FAG +IYSR NPTV +M
Sbjct: 15 YTSEEHKGSLTPPLFQTSTFTFETAQQGEASFAGV----DPSYIYSRLGNPTVKLFEERM 70
Query: 109 AALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 168
A LEG E A SGM+AIS+ L+ +G H++ + LYG T+ L IT +
Sbjct: 71 AVLEGGEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLE-VLEEKFMITHS 129
Query: 169 FVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP 227
F D+ + + I + TK+++ E+ NPT+ + ++ ++ R+A G+ V+VDNTF SP
Sbjct: 130 FCDMETEADIENKI-RPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSP 188
Query: 228 LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK 287
+ P LG D VVHS +K+I G D++AG + + + +G M P
Sbjct: 189 YLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKD---IGGIMAPF 245
Query: 288 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLED--HPHHELLKSMANKE 345
A+ L + L +RM HC A +K + +E +P EL +
Sbjct: 246 DAWLLLRGLKTLAVRMDRHCDNAEKIVSFLK------NHDAVEGVWYPEGELASRQMKRG 299
Query: 346 YGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404
GG++ ++ +E+ +N L F +AVSLG ETL+ + T + + AE
Sbjct: 300 ---GGVISFSIKGGKEETQAFINDL----HFITIAVSLGDTETLIQHPATMTHAAIPAEL 352
Query: 405 KALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436
+ GI L+R+SVG L + + S E+AL
Sbjct: 353 RQEMGIYDNLIRLSVG-LESWEDIVSDLEQAL 383
|
Length = 386 |
| >gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (478), Expect = 2e-55
Identities = 108/340 (31%), Positives = 182/340 (53%), Gaps = 19/340 (5%)
Query: 86 PDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAAR 145
P+ + + YSR NPTVL L++++ LE E +SGM AIS+ + L G V+ R
Sbjct: 32 PEGEKYRYSREANPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLKPGNSVLVHR 91
Query: 146 TLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANI 205
++G ++ T + + + + ++ A + R V++ E+I+NP L V +I
Sbjct: 92 DMFGRSYRFFTDYL-KNWGVNVDASNPGSDNIIEKAKSK-RYDVVFVENITNPLLRVVDI 149
Query: 206 PELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 264
ELS++ + G ++VD TFS P+ P LGAD+VVHS SKF++G D+IAG G
Sbjct: 150 TELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGK 209
Query: 265 LVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLG-- 321
L+N + + + LG +++P A+ L+ R I L +RM A A ++
Sbjct: 210 LLNVIDQMRRT----LGTSLDPHAAY-LTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKV 264
Query: 322 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAV 380
+KV YPGL+ H +E+ + + GFGG+L ++ +E A ++M L + A
Sbjct: 265 VKVYYPGLKSHVDYEIARRVLK---GFGGVLSFEVNGGQESALKVMKSL----KLIIPAQ 317
Query: 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
+LG +++S + + L+ EE+ + GI+ L+R+SVG
Sbjct: 318 TLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVG 357
|
Length = 376 |
| >gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 3e-54
Identities = 116/406 (28%), Positives = 197/406 (48%), Gaps = 38/406 (9%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
EHG V+ I S T+ + + +F G+ F Y+R PT L ++ +EG
Sbjct: 6 EHGAVHKPIHTSVTYGYEDARDLIDVFQGKKPG----FTYARQGTPTTAALEAKITKMEG 61
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
C A+GM+AI++V + L +G H+V+++ L+G T++L R + T VD +
Sbjct: 62 GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTL--RGLGVEVTMVDAT 119
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D + V +AI + T++++ E+I+NP VA++ + L ++G+ VVDNT SP + P
Sbjct: 120 DVQNVAAAI-RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRP 178
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGP--------ANLVNS----------MMDLHQ 274
+GA +V++S+SK+I+G + + GAV N+ + + + +
Sbjct: 179 KDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRK 238
Query: 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM---KKLGLKVLYPGLED 331
L +G T++ + A ++ L LR+ C AL A+ + K+ +V YPGL
Sbjct: 239 KGLRDMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVA-RVYYPGLAS 297
Query: 332 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391
HP H + +GGLL ++ +N L + A LG TL+
Sbjct: 298 HPQHARATELFR---HYGGLLSFELADGIDCFDFLNRL----KLVIKATHLGDTRTLVIP 350
Query: 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437
+ E+ AE +A GI+ L+R+SVG D + FE+AL
Sbjct: 351 VAPTIYYEMGAERRASMGIADSLIRVSVGIEDEADLI-ADFEQALD 395
|
Length = 397 |
| >gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 5e-53
Identities = 129/415 (31%), Positives = 204/415 (49%), Gaps = 30/415 (7%)
Query: 30 SMLSTAAAWEDPAAAL---ASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGP 86
A W PA L + R +FGE + ++ + F E F GE
Sbjct: 1 MTTEMARKWR-PATRLVHSGTLRSQFGE---TSEALFLTQGFVYDTAEAAEARFKGE--- 53
Query: 87 DRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAART 146
FIYSR+ NPTV ++M ALEG E A TASGM+A+++ ++ +G HVVAAR
Sbjct: 54 -DPGFIYSRYSNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVKAGDHVVAARA 112
Query: 147 LYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIP 206
L+G ++ PR I +T VD D + A V+ TKV + ES +NPTL V +I
Sbjct: 113 LFGSCRYVVETLLPRY-GIESTLVDGLDLDNWEKA-VRPNTKVFFLESPTNPTLEVIDIA 170
Query: 207 ELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL 265
++++A+ G +VVDN F +PL P LGA +VV+S +K I G + G V
Sbjct: 171 AVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAW 230
Query: 266 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LK 323
+ + Q GP+++P A+ L + + L +R+++ A A + +
Sbjct: 231 IEEHL---QDYFRHTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVAR 287
Query: 324 VLYPGLEDHPHHELLKSMANKEYGFGG-LLCLDME-TEEKANRLMNYLQNYAQFGFMAVS 381
V+YPG DHP +++ K+ G L+ +++ +E A R +N L + ++ +
Sbjct: 288 VIYPGRADHPQADIIA----KQMTGGSTLVAFELKGGKEAAFRFLNAL----KIVRISNN 339
Query: 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436
LG ++L++ ++T L+ E +A GIS G +R+S G L D AL
Sbjct: 340 LGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAG-LEDTDDLIEDLAAAL 393
|
Length = 398 |
| >gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 6e-53
Identities = 119/361 (32%), Positives = 183/361 (50%), Gaps = 39/361 (10%)
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151
IY+R NPT +++AALEG A +SG +AI+ ++ + S+G +V++ +LYGGT
Sbjct: 57 IYTRIMNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGT 116
Query: 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211
+ L H P+ IT FVD SD E +AI +TK L+ E+I NP V +I ++ +
Sbjct: 117 YNLFAHTLPK-LGITVKFVDPSDPENFEAAIT-DKTKALFAETIGNPKGDVLDIEAVAAI 174
Query: 212 AHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 270
AH+ G+ ++VDNTF SP +L P GAD+VVHS +KFI G I G +
Sbjct: 175 AHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGS 234
Query: 271 DLHQG-----------------------------ALMLLGPTMNPKVAFELSERIPHLGL 301
G L LG ++P +F L + + L L
Sbjct: 235 GKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHL 294
Query: 302 RMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 359
RM+ H AL A+ +++ V YPGL HP +EL K K G G +L ++
Sbjct: 295 RMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPK--GQGAILTFGIKGG 352
Query: 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 419
+A + + + F +A ++G ++L+ S+T +L+ EE+ AG++ GLVR+SV
Sbjct: 353 VEAGK--KLIDSVKLFSHLA-NVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVRLSV 409
Query: 420 G 420
G
Sbjct: 410 G 410
|
Length = 431 |
| >gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 1e-52
Identities = 123/401 (30%), Positives = 182/401 (45%), Gaps = 26/401 (6%)
Query: 40 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNP 99
AAL +A E V I ++ FT + M ++AGE + IYSR NP
Sbjct: 8 FDLAALITAHDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGE----KVRPIYSRGDNP 63
Query: 100 TVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFF 159
TV +A LEG E A ASGM+AISS ++ G +VA R +Y L
Sbjct: 64 TVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETIL 123
Query: 160 PRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTV 219
R + +VD D E V A+ K+LY ES ++ + ++ L+ LA GV
Sbjct: 124 KRM-GVEVDYVDGRDEEAVAKAL--PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVT 180
Query: 220 VVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 278
++DN++ SP+ P LG D+V+HS SK++ G +D +AG V G + + A
Sbjct: 181 MIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAE---AYP 237
Query: 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHE 336
LG ++P A+ L + L LRMK H AL ARR+K + +V +P L +HP
Sbjct: 238 YLGAKLSPFEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAG 297
Query: 337 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 396
L G GL + L+ + + VS G +E+L+ +
Sbjct: 298 LS--------GTSGLFSFIFREGIDVRAFADALKLFR----LGVSWGGHESLVVPAEVVL 345
Query: 397 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437
+ A G+S VR+ VG GT W+ E+AL+
Sbjct: 346 QQKAQPNSAARFGVSPRSVRLHVGLEGTEAL-WADLEQALA 385
|
Length = 389 |
| >gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 2e-52
Identities = 114/360 (31%), Positives = 183/360 (50%), Gaps = 30/360 (8%)
Query: 78 RMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSS 137
F GEL D F+YSR+ NPTV ++ +EG EA + TASGMSA+ + L L +
Sbjct: 53 AAFTGEL----DRFVYSRYGNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGA 108
Query: 138 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197
G +VAAR+L+G + PR + T FVD D A+ T+ ++FE+ SN
Sbjct: 109 GDRLVAARSLFGSCFVVCNEILPR-WGVETVFVDGEDLSQWEEALSV-PTQAVFFETPSN 166
Query: 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIA 256
P ++ +I +S LAH G VV+DN F +PL+ LGADVVV+S +K I G ++
Sbjct: 167 PMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLG 226
Query: 257 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316
GA+ G ++ + Q + GP ++ A+ L + + L LR++ AL A
Sbjct: 227 GAILGDREYIDGPV---QKLMRHTGPALSAFNAWVLLKGLETLALRVRHSNASALRIAEF 283
Query: 317 MKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGG------LLCLDMETEEKANRLMNY 368
++ V YP L HP ++L A ++ GG L + +++A +++
Sbjct: 284 LEGHPAVRWVRYPFLPSHPQYDL----AKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDK 339
Query: 369 LQNYAQFGFMAVS--LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 426
L+ + +S LG ++L++ ++T + E +A G+ G+VR+SVG T D
Sbjct: 340 LR------VIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLEDTDD 393
|
Length = 403 |
| >gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 4e-52
Identities = 116/331 (35%), Positives = 176/331 (53%), Gaps = 16/331 (4%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
YSR NPT L +A LEG + ASG++ I +V L SG HV+ +YGGT
Sbjct: 44 YSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTF 102
Query: 153 ALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212
L + ++ T +D SD + AI + TK LY E+ SNP L + ++ + + +A
Sbjct: 103 RLFDKVLVKN-GLSCTIIDTSDLSQIKKAI-KPNTKALYLETPSNPLLKITDLAQCASVA 160
Query: 213 HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 271
D G+ +VDNTF +P +P LGAD+VVHS +K++ G +D++AG V + +
Sbjct: 161 KDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA 220
Query: 272 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGL 329
Q A +G + P+ ++ L I LGLRM+ H AL A ++K KV YPGL
Sbjct: 221 FFQNA---IGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGL 277
Query: 330 EDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389
HP+HEL K GF G+L ++ + +A + ++++ F + SLG E+L+
Sbjct: 278 PTHPNHELAKKQMR---GFSGMLSFTLKNDSEA---VAFVESLKLF-ILGESLGGVESLV 330
Query: 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
T + + E++ AGI GLVR+SVG
Sbjct: 331 GIPAFMTHACIPKEQREAAGIRDGLVRLSVG 361
|
Length = 380 |
| >gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 4e-52
Identities = 116/385 (30%), Positives = 188/385 (48%), Gaps = 32/385 (8%)
Query: 41 PAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPT 100
+ L + ++ + +M I +ATF A E GP + Y+R NPT
Sbjct: 1 LSTLLVNTDNKNDPYDASSMPIYQTATFKQPL--------AIENGP----YDYTRSGNPT 48
Query: 101 VLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP 160
L +A L+ + A+ +SGM+A+ V+ +L ++G ++A LYGGT LLT P
Sbjct: 49 RTALESLLAKLDKADRAFAFSSGMAALD-VITRLLNNGDEIIAGDDLYGGTDRLLTQVVP 107
Query: 161 RACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 220
R+ + VD +D + V +A+ +TK++ ES +NP + +I ++S +AH + VV
Sbjct: 108 RS-GVVVVHVDTTDLDKVKAAL-GPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVV 165
Query: 221 VDNT-FSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 279
VDNT SPL+ +P LGAD+V HS +KF++G +D++AG + + + Q +
Sbjct: 166 VDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNS--- 222
Query: 280 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHEL 337
G + P + L I L +R+++ A A + KV Y GL HP L
Sbjct: 223 TGSGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHL 282
Query: 338 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL--MSCSGSS 395
S A G G +L + + + RL+ + ++ + VS G +L M C S
Sbjct: 283 HFSQAK---GAGSVLSFETGSVALSKRLVEATKLFS----ITVSFGSVNSLISMPCFMSH 335
Query: 396 TSSELNAEEKALAGISAGLVRMSVG 420
S + AE + G+ LVR+SVG
Sbjct: 336 AS--IPAEVREERGLPEDLVRLSVG 358
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378 |
| >gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 6e-50
Identities = 118/331 (35%), Positives = 174/331 (52%), Gaps = 14/331 (4%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
YSR NPT L + +A LEG A T +GMSAI V L +VA YGGT+
Sbjct: 45 YSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTY 104
Query: 153 ALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212
LL + C FVD D + + +A+ Q + K++ E+ SNP L V +I ++ LA
Sbjct: 105 RLLNALAKKGC-FRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLA 162
Query: 213 HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 271
G VVVDNTF SP + +P LGAD+V+HS +K+++G +D+IAGAV A +
Sbjct: 163 KAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVI--AKDPQVAEE 220
Query: 272 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGL 329
L A LG T ++ + L RM+ A ++ L K+ YPGL
Sbjct: 221 LAWWA-NNLGVTGGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGL 279
Query: 330 EDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389
DHP HE+ A ++ GFG +L +++ E+ + +L + F +A SLG E+L+
Sbjct: 280 PDHPGHEI---AARQQKGFGAMLSFELKGGEQT--VRRFLGGLSLFT-LAESLGGVESLI 333
Query: 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
+ + T + + E +A AGIS L+R+SVG
Sbjct: 334 AHPATMTHAAMGPEARAEAGISDTLLRLSVG 364
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382 |
| >gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 7e-50
Identities = 113/366 (30%), Positives = 183/366 (50%), Gaps = 38/366 (10%)
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151
IY+R NPT + +++AALEG AA ASG +A + ++ L +G H+V++ LYGGT
Sbjct: 62 IYTRIMNPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGT 121
Query: 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211
+ L + P+ I +FV+ D A V+ TK + E+ISNP + V +IP ++ +
Sbjct: 122 YNLFHYTLPK-LGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEV 180
Query: 212 AHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC---------- 260
AH+ GV ++VDNT +P ++ P GAD+VVHS +K++ G IAG +
Sbjct: 181 AHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQG 240
Query: 261 --------GPANLVNSMMDLHQGALML---------LGPTMNPKVAFELSERIPHLGLRM 303
P+ +L A L LG ++P AF +++ + L LR+
Sbjct: 241 RFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRI 300
Query: 304 KEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK 361
+ H A A ++ V Y GL P +E K +A K G G +L ++ +
Sbjct: 301 ERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPK--GTGAVLSFELAGGVE 358
Query: 362 ANR-LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
A + +N L ++ ++G +L+ S+T S+L EE+ G++ GLVR++VG
Sbjct: 359 AGKAFVNALTLHSHV----ANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVG 414
Query: 421 YLGTLD 426
G D
Sbjct: 415 IEGIDD 420
|
Length = 436 |
| >gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 2e-48
Identities = 118/364 (32%), Positives = 180/364 (49%), Gaps = 44/364 (12%)
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151
IY+R NPT L +++AALEG A ASGM+AI+ + + +G ++V+ LYGGT
Sbjct: 51 IYTRIMNPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGT 110
Query: 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211
+ LL H PR I T F D + A++ RTK ++ ESI NP + +I L+
Sbjct: 111 YNLLAHTLPRI-GIETRFAAHDDIAAL-EALIDERTKAVFCESIGNPAGNIIDIQALADA 168
Query: 212 AHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN------ 264
AH GV ++VDNT +P++ P GAD+VVHS++K+I G I G V
Sbjct: 169 AHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEH 228
Query: 265 -----LVNSMMDLHQGA-------------------LMLLGPTMNPKVAFELSERIPHLG 300
L+N+ + G L +G ++P AF + + + L
Sbjct: 229 KERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLA 288
Query: 301 LRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHEL-LKSMANKEYGFGGLLCLDME 357
LRM+ H AL AR +++ V Y GL DHP HEL + M K +L ++
Sbjct: 289 LRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKP---ASILSFGIK 345
Query: 358 TEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 416
+ A R ++ L+ + V++G ++L S+T +LN EE AG+S +VR
Sbjct: 346 GGQAAGARFIDALKLVVRL----VNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVR 401
Query: 417 MSVG 420
+S+G
Sbjct: 402 LSIG 405
|
Length = 425 |
| >gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-47
Identities = 123/391 (31%), Positives = 188/391 (48%), Gaps = 35/391 (8%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
G V I ++TF E M + P +IY+R NPTV + A LE
Sbjct: 23 RFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMP----YIYTRWGNPTVQAFEEKYAVLEN 78
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
E A +SGM AI+S ++ L G +++ LYG T +FF + VD
Sbjct: 79 AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTF----YFFNKVLKTLGIHVDYI 134
Query: 174 DHEMVNSAIVQGRT-KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 231
D + +NS ++Y ESI+NPTL V +I +S H+ V+VD TF SP +
Sbjct: 135 DTDRLNSLDFDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEN--DVIVDATFASPYNQN 192
Query: 232 PARLGADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALMLLGPTMNPKVAF 290
P LGADVV+HS +K+ISG +D++ G ++ N++++ + LG +P A+
Sbjct: 193 PLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK----TLGSNPDPIQAY 248
Query: 291 ELSERIPHLGLRMKEHCHRALIFAR--RMKKLGLKVLYPGLEDHPHHELLKSMANKEY-G 347
+ LGLRM++H + AR R K V YP E + K G
Sbjct: 249 LALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE----------IGKKVLRG 298
Query: 348 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 407
FGG+L ++ + E ++ + L + +A SLG E+L++ ++ S L+ EE+
Sbjct: 299 FGGMLSFELRSMEDVHKFIRNL----EIPMVAASLGGVESLITLPVETSHSSLSPEERER 354
Query: 408 AGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438
GIS LVR S+G + +D E ALS+
Sbjct: 355 LGISDNLVRFSIG-IEDIDDLIKDIENALSK 384
|
Length = 384 |
| >gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 7e-47
Identities = 107/331 (32%), Positives = 173/331 (52%), Gaps = 14/331 (4%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
YSR NPT + R +A LEG A T +GMSAI V G +VA YGG++
Sbjct: 46 YSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSY 105
Query: 153 ALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212
L R C FVD D + + +A+ + + K++ ES SNP L V +I ++ LA
Sbjct: 106 RLFDSLAKRGC-YRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLA 163
Query: 213 HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 271
+ G VVDNTF SP + +P LGAD+V+HS +K+++G +D++AG V V + +
Sbjct: 164 REAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELA 223
Query: 272 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGL 329
+ + G + ++ L + L RM+ A + ++ L K+ +P L
Sbjct: 224 WWANNIGVTGGAFD---SYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSL 280
Query: 330 EDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389
++ HE+ A ++ GFG +L +++ +E+ R +L + F +A SLG E+L+
Sbjct: 281 PENQGHEI---AARQQKGFGAMLSFELDGDEQTLR--RFLGGLSLFT-LAESLGGVESLI 334
Query: 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
S + + T + + E +A AGIS L+R+S G
Sbjct: 335 SHAATMTHAGMAPEARAAAGISETLLRISTG 365
|
Length = 386 |
| >gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 2e-44
Identities = 113/361 (31%), Positives = 170/361 (47%), Gaps = 39/361 (10%)
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151
IY+R NPT L ++AALEG AA ASG +A V L G +AAR LYGG+
Sbjct: 56 IYTRITNPTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGS 115
Query: 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211
H F ++ + D D AI RTK ++ ESI+NP V +I ++ +
Sbjct: 116 INQFGHAF-KSFGWQVRWADADDPASFERAI-TPRTKAIFIESIANPGGTVTDIAAIAEV 173
Query: 212 AHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV--CGPANLVNS 268
AH G+ ++VDNT SP ++ P GAD+VVHS++KF+ G + + G + G + S
Sbjct: 174 AHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKS 233
Query: 269 M--------------MDLHQG-------------ALMLLGPTMNPKVAFELSERIPHLGL 301
+ LH+ L LGP ++P AF + I L L
Sbjct: 234 GKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPL 293
Query: 302 RMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 359
RM+ H AL A +K V Y GL D P+H L + + K G G + ++
Sbjct: 294 RMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPK--GAGAVFTFGLKGG 351
Query: 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 419
+A + + + F +A ++G +L+ S+T +L E+K AG +VR+S+
Sbjct: 352 YEAG--VKLVSSLKLFSHLA-NIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSI 408
Query: 420 G 420
G
Sbjct: 409 G 409
|
Length = 427 |
| >gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 6e-43
Identities = 120/425 (28%), Positives = 192/425 (45%), Gaps = 49/425 (11%)
Query: 33 STAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGE-LGPDRDFF 91
S A W ++ + + + N+ I + ++ E ++ FA E LGP
Sbjct: 7 SNADQWGFETRSIHAGQSVDSDTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGP----- 61
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151
IYSR NPTV L ++A+LEG A ASG +A ++ ++ L +G H+V + LYGGT
Sbjct: 62 IYSRLTNPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGT 121
Query: 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211
L R I TFV+ D A VQ TK + E+ +NP V +IP ++ +
Sbjct: 122 ETLFLVTLNR-LGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEV 180
Query: 212 AHDKGVTVVVDNTFSPLVL-SPARLGADVVVHSISKFISGGADIIAGAVC---------- 260
AH V ++VDNT + L P LGADVVV S++KF +G + G +
Sbjct: 181 AHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVE 240
Query: 261 -------------GPANLVNSMMDLHQGALML---------LGPTMNPKVAFELSERIPH 298
PA DL A L G T++P A+ ++ +
Sbjct: 241 RDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDT 300
Query: 299 LGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 356
L LR++ H A+ A + KV + GL+D P + K +Y G +L D+
Sbjct: 301 LSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYA-TKEKLGLKYT-GSVLSFDI 358
Query: 357 -ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV 415
+++A ++ L+ ++ ++G +L+ ++T S+ + A AGI+ V
Sbjct: 359 KGGKDEAWAFIDALKLHSNLA----NIGDVRSLVVHPATTTHSQSDEAGLARAGITQATV 414
Query: 416 RMSVG 420
R+SVG
Sbjct: 415 RLSVG 419
|
Length = 437 |
| >gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 7e-42
Identities = 97/334 (29%), Positives = 166/334 (49%), Gaps = 34/334 (10%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
F YSR NPT L + +A LEG + + +SGM+AI ++M L SG ++ + LYGG
Sbjct: 44 FDYSRTGNPTRGVLEQAIADLEGGDQGFACSSGMAAIQ-LVMSLFRSGDELIVSSDLYGG 102
Query: 151 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210
T+ L + N+ +V+ + + + AI TK ++ E+ +NP + +I +++
Sbjct: 103 TYRLFE-EHWKKWNVRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAK 160
Query: 211 LAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG-AVCGPANLVNS 268
+A G+ ++VDNTF +P++ P GAD+V+HS +K++ G D++AG V L
Sbjct: 161 IAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCER 220
Query: 269 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLK-VLY 326
+ A G ++P ++ L + L LRM++H A A + + G+ VLY
Sbjct: 221 LAYYQNAA----GAVLSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLY 276
Query: 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386
PG GG+L ++ EE N +L++ F A SLG E
Sbjct: 277 PGR-------------------GGMLSFRLQDEEWVNP---FLKSLKLITF-AESLGGVE 313
Query: 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
+ ++ + T +++ E + G+ L+R SVG
Sbjct: 314 SFITYPATQTHADIPEEIRIANGVCNRLLRFSVG 347
|
Length = 366 |
| >gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 9e-39
Identities = 116/335 (34%), Positives = 169/335 (50%), Gaps = 22/335 (6%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
Y+R NPT L +A LEG TA+GM AI+ VL L G +V YGG+
Sbjct: 54 YTRSGNPTRDLLGEALAELEGGAGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSW 113
Query: 153 ALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212
L + T D++D + A+ Q K++ E+ SNP L + ++ + A
Sbjct: 114 RLFNALAKKGHFALIT-ADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAA 171
Query: 213 HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 271
H G VVDNTF SP + P GAD+V+HS +K+I+G +D++ GAV V +
Sbjct: 172 HKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAV------VARDAE 225
Query: 272 LHQGALM---LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLY 326
LHQ + LG T +P AF + L R++ H A A + +V Y
Sbjct: 226 LHQQLVWWANALGLTGSPFDAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYY 285
Query: 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR-LMNYLQNYAQFGFMAVSLGYY 385
PGL HP H L A ++ GFG +L ++E E A R ++ L+ + +A SLG
Sbjct: 286 PGLASHPGHAL---AARQQKGFGAMLSFELEGGEAAVRAFVDGLRYFT----LAESLGGV 338
Query: 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
E+L++ S T + + AE +A AGIS GL+R+SVG
Sbjct: 339 ESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVG 373
|
Length = 405 |
| >gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 5e-38
Identities = 107/337 (31%), Positives = 165/337 (48%), Gaps = 26/337 (7%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
Y+R NP L + ++ LE + A T G SA++ + L +VA YGGT+
Sbjct: 47 YTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTY 106
Query: 153 ALLTHFFPRA--CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210
L F RA + FVD SD +++A+ + + K++ E+ SNP + V +I EL +
Sbjct: 107 RL---FNTRANKGDFKVQFVDQSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQ 162
Query: 211 LAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 269
A G V VDNTF +P++ P LGAD V+HS +K+I+G +D+I G + +
Sbjct: 163 KAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLI-------TK 215
Query: 270 MDLHQGALM----LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--K 323
H L +G T P ++ I LG RM+ H A ++ L
Sbjct: 216 TKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGT 275
Query: 324 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383
+ +P L +HP HE+ K ++ GFG + L E +L +++ A F +A SLG
Sbjct: 276 IYHPSLPEHPGHEIAK---KQQSGFGSM--LSFEFAGSFEQLKVFVKALALFS-LAESLG 329
Query: 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
E+L+ S T + E A AG+S L+R+SVG
Sbjct: 330 GVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVG 366
|
Length = 388 |
| >gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-37
Identities = 99/357 (27%), Positives = 160/357 (44%), Gaps = 51/357 (14%)
Query: 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151
+YSR +P + ++A EG E+A +SGMSAI++ L+ G ++ ++ LYGGT
Sbjct: 76 VYSRFNHPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGT 135
Query: 152 HALLTHFFPRACNITTTFVDISD-------HEMVNSAIVQGRTKVLYFESISNPTLAVAN 204
LL F N V +D +A +GR ++ E+ +NPT ++ +
Sbjct: 136 ETLLAKTFR---NFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVD 192
Query: 205 IPELSRLA------HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG 257
+ + R+A + DNT P+ P GAD+ V+S++K++ G +D++AG
Sbjct: 193 VAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAG 252
Query: 258 AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM 317
AV G L+ + L + A +G ++P + L + L LRM+ A A
Sbjct: 253 AVLGRKALIRQVRAL-RSA---IGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEF- 307
Query: 318 KKLGLKVLYPGLEDHPHHELL--------KSMANKEY-----GFGGLLCLDME-TEEKAN 363
L DHP E L S Y G G D++ + A
Sbjct: 308 -----------LRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAF 356
Query: 364 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
R +N LQ + +AVSLG E+L S S T S + A+ + G+ +R+S+G
Sbjct: 357 RFLNALQIFK----LAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIG 409
|
Length = 427 |
| >gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 4e-37
Identities = 102/336 (30%), Positives = 168/336 (50%), Gaps = 40/336 (11%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
F Y+R NPT L +AA+E + A T+SGMSAI + + G VVA R LYGG
Sbjct: 46 FDYTRTKNPTRAKLEETLAAIESADYALATSSGMSAIV-LAFSVFPVGSKVVAVRDLYGG 104
Query: 151 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210
+ +F + ++ E A ++ T ++Y E+ +NP + +I ++++
Sbjct: 105 SF----RWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAK 160
Query: 211 LAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 269
LAH KG V+VDNTF SP+ P LGAD+V+HS +K++SG D++AG V V +
Sbjct: 161 LAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVV------VTND 214
Query: 270 MDLHQGALMLL---GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KV 324
++L++ L G ++P ++ L + L LRM+ A +KK +V
Sbjct: 215 LELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEV 274
Query: 325 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384
LY G GG++ + E + ++N L+ F F A SLG
Sbjct: 275 LYTGK-------------------GGMISFKVADETRIPHILNSLK---VFTF-AESLGG 311
Query: 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
E+L++ + T +++ AE + G++ L+R+S+G
Sbjct: 312 VESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIG 347
|
Length = 364 |
| >gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-36
Identities = 105/363 (28%), Positives = 177/363 (48%), Gaps = 41/363 (11%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
+IY+R NPT+ +++A LEG A TASG +AI ++ +CSSG H++ + T+YGG
Sbjct: 53 YIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGG 112
Query: 151 THALLTHFFPRACNITTTFV--DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 208
T L R I TF +++ E+V A+ +TK++Y ES+ NP + V N E
Sbjct: 113 TFNLFGVSL-RKLGIDVTFFNPNLTADEIV--ALANDKTKLVYAESLGNPAMNVLNFKEF 169
Query: 209 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-- 265
S A + V +VDNT +P + GA+++VHS +K+I G A + G V N
Sbjct: 170 SDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDW 229
Query: 266 -----------------VNSMMDLHQGALML---------LGPTMNPKVAFELSERIPHL 299
V+ + + A ++ G M+P A+ + + L
Sbjct: 230 TNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETL 289
Query: 300 GLRMKEHCHRALIFARRMKKLGLK--VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357
LRM+ H AL A+ + V YPGL+ + ++ L + K G G+L ++
Sbjct: 290 HLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKK--GASGVLTFGIK 347
Query: 358 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 417
+A + ++ N + + + T + S+T +L+AE++ LAG+++ L+R+
Sbjct: 348 GGLEAAK--EFIAN-VKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRL 404
Query: 418 SVG 420
SVG
Sbjct: 405 SVG 407
|
Length = 432 |
| >gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 7e-36
Identities = 107/353 (30%), Positives = 181/353 (51%), Gaps = 28/353 (7%)
Query: 75 TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL 134
T ++ A E GP + Y+R NPT L +A L+ + A+C SGM+A+S+V L
Sbjct: 113 TFKQPSAIENGP----YDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAV-THL 167
Query: 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 194
+G +VA +YGG+ LL+ PR+ + V+ ++ + V +AI +TK+++ ES
Sbjct: 168 IKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNTTNLDEVAAAI-GPQTKLVWLES 225
Query: 195 ISNPTLAVANIPELSRLAHDKGVTVVVDNT-FSPLVLSPARLGADVVVHSISKFISGGAD 253
+NP +++I +++ +AH +G V+VDN+ SP++ P LGAD+V+HS +KFI+G +D
Sbjct: 226 PTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSD 285
Query: 254 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 313
++AG + + + Q + G + P + I + LR+++ A
Sbjct: 286 VMAGVLAVKGEKLAKEVYFLQNS---EGSGLAPFDCWLCLRGIKTMALRIEKQQENARKI 342
Query: 314 AR------RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN 367
A R+K KV Y GL DHP H L S A G G + + L
Sbjct: 343 AMYLSSHPRVK----KVYYAGLPDHPGHHLHFSQAK---GAGSVFSFITGSVA----LSK 391
Query: 368 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
+L ++ +AVS G ++L+S + + + AE + G++ LVR+S G
Sbjct: 392 HLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG 444
|
Length = 464 |
| >gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 106/355 (29%), Positives = 150/355 (42%), Gaps = 45/355 (12%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
Y R NPT L + LEG EA SGM+AI++VL L G VV Y
Sbjct: 45 YGRASNPTWRALEAALGELEGAEAL-VFPSGMAAITAVLRALLRPGDTVVVPADGYYQVR 103
Query: 153 ALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212
AL + +T M +A+ ++ E+ SNP L V ++ L+ A
Sbjct: 104 ALAREYL-APLGVTVREA--PTAGMAEAAL--AGADLVLAETPSNPGLDVCDLAALAAAA 158
Query: 213 HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG--AVCGPANLVNSM 269
H G +VVDNT +PL P LGAD+VV S +K ++G +D++ G A P +
Sbjct: 159 HAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPE-----L 213
Query: 270 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK----LGLKVL 325
M + +L G P A+ + LGLR C AL A + G++
Sbjct: 214 MAAVERWRLLAGAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVR-- 271
Query: 326 YPGLEDHPHHEL-LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384
YPGL P HE+ + M FGGL+ ++ A R + + A S G
Sbjct: 272 YPGLPGDPAHEVAARQMR----RFGGLVSFELADAAAAERFVAASRLVVA----ATSFG- 322
Query: 385 YETLMSCSGSSTSSELNAEEKALAG--ISAGLVRMSVGYLGTLDQRWSQFEKALS 437
G TS A+ +A G + G VR+S G T D + E+AL
Sbjct: 323 --------GVHTS----ADRRARWGDAVPEGFVRLSCGIEDTDDL-VADLERALD 364
|
Length = 366 |
| >gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 89/377 (23%), Positives = 170/377 (45%), Gaps = 32/377 (8%)
Query: 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
G VN ++ ++T RR + Y R T L M LEG
Sbjct: 15 GSVNPPLQRASTVLFDSHAAQRR--------AKGELTYGRRGTLTHFALQDAMCELEGGA 66
Query: 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175
Y SG++A+++ ++ +G HV+ + Y T R + T+ D
Sbjct: 67 GCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRM-GVDITYYDPLIG 125
Query: 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPAR 234
E + + ++Q TKVL+ E+ S+ T + +IP +++ A + G+ +++DNT++ L+ P
Sbjct: 126 EDI-ATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPLE 184
Query: 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 294
G D+ + + +K++ G +DI+ G V A + + + L+G ++ A+
Sbjct: 185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLRE----HSYLMGQMVDADDAYTTLR 240
Query: 295 RIPHLGLRMKEHCHRALIFARRM--KKLGLKVLYPGLEDHPHHELLKSMANKEY-GFGGL 351
+ LG+R+K+H +L A+ + + +VL+P L P HE K +++ G GL
Sbjct: 241 GLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWK----RDFSGSSGL 296
Query: 352 LCLDME--TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 409
++ T+++ + +++LQ + + S G YE+L C EL
Sbjct: 297 FSFVLQRLTQKQVHAFLDHLQLFG----LGYSWGGYESLALC----NQPELGHRPNIKRN 348
Query: 410 ISAGLVRMSVGYLGTLD 426
+ L+R+ +G D
Sbjct: 349 LEGPLIRVHIGLENVDD 365
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377 |
| >gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 73/253 (28%), Positives = 122/253 (48%), Gaps = 20/253 (7%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
Y H PT L L++++A +EG A SG++AIS V L +G V+ Y G +
Sbjct: 59 YGLHATPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAY-GPN 117
Query: 153 ALLTHFFPRACNITTTFVDISDHEMVNSAI---VQGRTKVLYFESISNPTLAVANIPELS 209
+ R IT F D ++ + I +Q T++++ E+ + T+ V ++P ++
Sbjct: 118 RDHGEWLARDFGITVRFYD----PLIGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAIT 173
Query: 210 RLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 268
A +GV +DNT+S L P G D+ V +++K+ SGG+D++ GA + +
Sbjct: 174 AAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGAT------ITA 227
Query: 269 MMDLH---QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LK 323
+LH + A M LG ++ + +P L +R+ H AL A +K
Sbjct: 228 DAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIAT 287
Query: 324 VLYPGLEDHPHHE 336
VL+P L D P H
Sbjct: 288 VLHPALPDCPGHA 300
|
Length = 394 |
| >gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 71/253 (28%), Positives = 114/253 (45%), Gaps = 15/253 (5%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
Y R PT + LEG SG +AIS+ L+ +G H++ + Y T
Sbjct: 55 YGRRGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTR 114
Query: 153 ALLTHFFPRACNITTTFVDISDHEMVNSAI---VQGRTKVLYFESISNPTLAVANIPELS 209
L I TT+ D M+ I ++ TKVL+ ES + T+ V ++P LS
Sbjct: 115 DLCDKILKGF-GIETTYYD----PMIGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLS 169
Query: 210 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 268
R+AH+ + V++DNT+ SP+ P +G D+ + + +K+I G +D++ G A
Sbjct: 170 RIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGT----ATANEK 225
Query: 269 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLY 326
D + L+G +P + + LG+R+ +H AL A + V +
Sbjct: 226 HWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRH 285
Query: 327 PGLEDHPHHELLK 339
P E P HE K
Sbjct: 286 PAFETCPGHEFFK 298
|
Length = 394 |
| >gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 2e-21
Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 29/294 (9%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
HG VN + ++T + ETM + + Y PT L + + ALEG+
Sbjct: 28 HGFVNPPVVHASTVLFPDAETM------ATRGQK--YTYGTRGTPTTDALCKAIDALEGS 79
Query: 115 EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI 172
SG++A++ + S G H + ++Y T HF C+ + V++
Sbjct: 80 AGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTR----HF----CDTMLKRLGVEV 131
Query: 173 SDHE-MVNSAI---VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP 227
++ + + I ++ TKV++ E+ + T + +IP ++ AH G V++DNT+ +P
Sbjct: 132 EYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATP 191
Query: 228 LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK 287
L P G D+ +H+ +K+ SG +DI+ G V +++ H LG P
Sbjct: 192 LYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAH----GTLGLCAGPD 247
Query: 288 VAFELSERIPHLGLRMKEHCHRALIFARRM--KKLGLKVLYPGLEDHPHHELLK 339
+++ + +G+R++ H AL AR + + +VL+P L P HE+ K
Sbjct: 248 DTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWK 301
|
Length = 395 |
| >gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-18
Identities = 75/307 (24%), Positives = 134/307 (43%), Gaps = 25/307 (8%)
Query: 93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152
Y R T +L M LEG G +A+++ ++ G HV+ T Y T
Sbjct: 56 YGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQ 115
Query: 153 ALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212
+ + +TTT+ D + + ++Q TKV++ ES + T+ V ++P +
Sbjct: 116 DFCSKILSKL-GVTTTWFDPLIGADI-AKLIQPNTKVVFLESPGSITMEVHDVPAIVAAV 173
Query: 213 HDKG--VTVVVDNTFSPLVLSPA-RLGADVVVHSISKFISGGADI-----IAGAVCGPAN 264
+++DNT++ VL A G D+ + + +K++ G +D +A A C
Sbjct: 174 RSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQL 233
Query: 265 LVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM-KKLGLK 323
NS L+G ++ A+ S + LG+R+++H +L A + + +
Sbjct: 234 RENS---------YLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVA 284
Query: 324 VLY-PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL 382
+ P L HE K G GL ++ + +L NYL N++ F MA S
Sbjct: 285 RVNHPALPGCKGHEFWKRDFT---GSSGLFSFVLKKKLTDEQLANYLDNFSLFS-MAYSW 340
Query: 383 GYYETLM 389
G +E+L+
Sbjct: 341 GGFESLI 347
|
Length = 395 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 26/250 (10%)
Query: 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDISDHEM 177
T A+S +L L + G V+ Y G A L + + D E+
Sbjct: 65 TNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLEL 124
Query: 178 VNSAIVQGRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFSPLV----L 230
+ +A +TK+LY + +NPT AV + EL L A G+ ++ D ++ LV
Sbjct: 125 LEAAK-TPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEP 183
Query: 231 SPARLGAD-----VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN 285
PA D +V+ S SK G + G + P + + T++
Sbjct: 184 PPALALLDAYERVIVLRSFSKTF-GLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLS 242
Query: 286 PKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKV---------LYPGLEDHPHH 335
A L + HL + + R +K+LG V L+ L +
Sbjct: 243 QAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDE 302
Query: 336 ELLKSMANKE 345
E L+ + +
Sbjct: 303 EFLERLLLEA 312
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 55/195 (28%)
Query: 115 EAAYCTASGMSAISSVLMQLCSSGGHVV----------AARTLYGGT------HALLTHF 158
E TA A+ + L + G V+ AA L GG F
Sbjct: 90 EEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGF 149
Query: 159 FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH---DK 215
P E + +AI +TK + S +NPT AV + EL + +
Sbjct: 150 KPDL-------------EDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKAIVELAREH 195
Query: 216 GVTVVVDNTFSPLV-----------LSPARLGADVVVHSISKFISGGADIIAG-----AV 259
+ ++ D + LV L+ AR + ++S SK + G V
Sbjct: 196 DIIIISDEIYEELVYDGAEHPSILELAGARDRT-ITINSFSKTYG-----MTGWRIGWVV 249
Query: 260 CGPANLVNSMMDLHQ 274
P L+ ++ L
Sbjct: 250 GPPEELIAALRKLKS 264
|
Length = 393 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 51/227 (22%), Positives = 80/227 (35%), Gaps = 37/227 (16%)
Query: 64 ASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASG 123
S T T P M A +G + +Y +PTV L ++A L G EAA SG
Sbjct: 3 RSDTVTGPTPAMREAMAAAMVGDE----VYGG--DPTVNRLEDRVAELFGKEAALFVPSG 56
Query: 124 MSAISSVLMQLCSSGGHVVAART--LY---GGTHALLTHFFPRACNI----TTTFVDISD 174
A LM C G V+ +Y G HA L P D+
Sbjct: 57 TMANQLALMAHCRRGDEVICGEPAHIYFDETGGHAELGGAQPVPLPGAEAGKLDLEDLEA 116
Query: 175 HEMVNSAIVQGRTKVLYFESISNPT-------LAVANIPELSRLAHDKGVTVVVD----- 222
I T ++ S+ N +++ + E+ +A + G+ + +D
Sbjct: 117 AIRPVGDIHFPPTGLI---SLENTHNSAGGQVVSLEELREIRAIAREHGIPLHLDGARLA 173
Query: 223 -NTFSPLVLSPARL--GADVVVHSISKFISGGADIIAGAVCGPANLV 266
+ V + AD V S+SK GA + + G + +
Sbjct: 174 NAAVALGV-IVKEITSYADSVSMSLSK--GLGAP-VGSVLAGSDDFI 216
|
Length = 288 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 183 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD--NTFSPLVLSPARLGADVV 240
+ +TK++ +SN T V + E++ LAH+ G V+VD L + LG D +
Sbjct: 159 ITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFL 218
Query: 241 VHSISKFISGGADIIAGAVCGPANLVNSM 269
S K++ G I G + L+ +
Sbjct: 219 AFSGHKWLLGPTGI--GVLYVRKELLEEL 245
|
Length = 405 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 25/166 (15%)
Query: 181 AIVQGRTKVLYFESISNPTLAVANIPELSRLA-----HDKGVTVVVDNTFSPLVLSPARL 235
A + +TK + S +NPT AV N EL +A HD + V+ D ++ L
Sbjct: 149 AAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHD--LIVLSDEIYAELTYD---- 202
Query: 236 GADVVVHSISK------FISGGADIIA------GAVCGPANLVNSMMDLHQGALMLLGPT 283
A SI ISG + A G + P +M+ +HQ ++M PT
Sbjct: 203 EAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMM-CAPT 261
Query: 284 MNPKVAFELSERIPHLGLRMKE-HCHRALIFARRMKKLGLKVLYPG 328
M A E +RM++ + R F ++GL PG
Sbjct: 262 MAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPG 307
|
Length = 378 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 186 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHS 243
+TK++ +SN V + E+++LAH G V+VD + + + L D V S
Sbjct: 159 KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFS 218
Query: 244 ISKFISGGADIIAGAVCGPANLVNSM 269
K + G I G + G L+ M
Sbjct: 219 GHK-MYGPTGI--GVLYGKEELLEQM 241
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 45/197 (22%), Positives = 66/197 (33%), Gaps = 36/197 (18%)
Query: 104 LSRQMAALEGTEAAYCTASGMSAISSVLMQLC-------------SSGGHVVAARTLYGG 150
L R EAA SG A L+ L + ++ R L GG
Sbjct: 54 LGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFR-LAGG 112
Query: 151 THALLTHFFPRACNITTTF-VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL- 208
+ F +D E +G KV+ S NPT VA + EL
Sbjct: 113 E------VVRYPLYSSNDFHLDFDALEAALKEATEGN-KVVLHTSPHNPTGTVATLEELE 165
Query: 209 --SRLAHDKGVTVVVDNTFSPLVLSPARLGA----------DVVVHSISKFISGGADIIA 256
LA + + ++VD ++ V A +VV S SK G A
Sbjct: 166 KLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAF-GLAGWRV 224
Query: 257 GAVCGPANLVNSMMDLH 273
G + G A +++ + L
Sbjct: 225 GYILGNAAVISQLRKLA 241
|
Length = 357 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 100.0 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 100.0 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 100.0 | |
| PLN02242 | 418 | methionine gamma-lyase | 100.0 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 100.0 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 100.0 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 100.0 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 100.0 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 100.0 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 100.0 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 100.0 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 100.0 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 100.0 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 100.0 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 100.0 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 100.0 | |
| PLN02509 | 464 | cystathionine beta-lyase | 100.0 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 100.0 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 100.0 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 100.0 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 100.0 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 100.0 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 100.0 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 100.0 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 100.0 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 100.0 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 100.0 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 100.0 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 100.0 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 100.0 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 100.0 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 100.0 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.98 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.97 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.97 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.97 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.97 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.97 | |
| PRK07324 | 373 | transaminase; Validated | 99.97 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.97 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.97 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.97 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.97 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.97 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.97 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.96 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.96 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.96 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.96 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.96 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.96 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.96 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.96 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.96 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.96 | |
| PLN02187 | 462 | rooty/superroot1 | 99.96 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.96 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.96 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.96 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.96 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.96 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.96 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.96 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.96 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.96 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.96 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.96 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.96 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.96 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.96 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.96 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.96 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.95 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.95 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.95 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.95 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.95 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.95 | |
| PLN02656 | 409 | tyrosine transaminase | 99.95 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.95 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.95 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.95 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.95 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.95 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.95 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.95 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.95 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.95 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.95 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.95 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.95 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.95 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.95 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.95 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.95 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.95 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.95 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.95 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.95 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.95 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.95 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.95 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.95 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.95 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.95 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.94 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.94 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.94 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.94 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.94 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.94 | |
| PLN02721 | 353 | threonine aldolase | 99.94 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.94 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.94 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.94 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.94 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.94 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.94 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.94 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.94 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.94 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.93 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.93 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.93 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.93 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.93 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.93 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.93 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.93 | |
| PLN02231 | 534 | alanine transaminase | 99.93 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.93 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.93 | |
| PLN02368 | 407 | alanine transaminase | 99.93 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.93 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.93 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.93 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.93 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.93 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.92 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.92 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.92 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.92 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.92 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.92 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.92 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.92 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.92 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.92 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.92 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.92 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.92 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.92 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.92 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.91 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.91 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.91 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.91 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.91 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.91 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.91 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.91 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.9 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.9 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.9 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.9 | |
| PLN02397 | 423 | aspartate transaminase | 99.9 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.9 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.9 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.89 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.89 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.89 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.89 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.89 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.88 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.88 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.88 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.88 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.88 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.88 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.88 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.87 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.87 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.87 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.87 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.86 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.86 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.86 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.86 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.85 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.85 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.85 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.84 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.84 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.84 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.84 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.84 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.84 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.84 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.84 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.84 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.83 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.83 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.83 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.82 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.82 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.82 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.82 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.81 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.81 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.81 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.81 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.81 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.8 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.8 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.8 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.79 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.79 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.79 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.79 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.79 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.78 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.78 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.78 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.77 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.77 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.77 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.77 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.77 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.76 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.76 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.76 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.76 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.76 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.76 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.76 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.75 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.75 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.75 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.74 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.74 | |
| PLN02263 | 470 | serine decarboxylase | 99.74 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.73 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.73 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.73 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.73 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.73 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.73 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.73 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.73 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.73 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.72 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.72 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.72 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.72 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.71 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.71 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.71 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.71 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.71 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.71 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.7 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.7 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.7 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.7 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.7 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.69 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.69 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.69 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.68 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.68 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.68 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.68 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.68 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.68 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.67 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.67 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.67 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.67 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.67 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.67 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.66 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.66 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.66 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.66 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.65 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.64 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.64 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.64 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.63 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.62 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.62 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 99.6 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.6 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.57 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.56 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.56 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.56 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.53 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.53 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.51 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.51 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.5 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.48 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.44 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.42 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.36 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.35 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.35 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.34 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.33 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.31 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.27 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 99.27 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.25 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.25 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.23 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.22 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.17 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.14 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.11 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.11 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.08 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.01 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.71 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.65 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.63 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.52 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.47 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.47 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 98.34 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 98.3 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 97.75 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.75 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.13 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 96.89 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 95.48 |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=493.49 Aligned_cols=386 Identities=38% Similarity=0.578 Sum_probs=351.5
Q ss_pred CCchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe
Q 013210 38 WEDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA 116 (447)
Q Consensus 38 ~~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~ 116 (447)
++.+.|+++|+. .....+|++++|||.++||.+++.+.....+... ...|.|+|.+||++..+|+.++.++|++.
T Consensus 5 ~~~~~T~~v~~g~~~~~~~gav~~PI~~tStf~~~~~~~~~~~~~~~----~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~ 80 (396)
T COG0626 5 KLSLTTRLVHAGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGE----EGGYDYSRTGNPTRDALEEALAELEGGED 80 (396)
T ss_pred ccccceeeEEcccccccCCCcccCCeeeeeeecccChhhhhhhcccc----ccCcccccCCCccHHHHHHHHHHhhCCCc
Confidence 346788888854 5667889999999999999999987766666332 45799999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 117 AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 117 ~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
++.++||+.|+..++..++++||+|+++...|++++..+...+++ .|+++.+++..+.+++++++..++|++|++|+|.
T Consensus 81 ~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~-~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPs 159 (396)
T COG0626 81 AFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQK-FGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPS 159 (396)
T ss_pred EEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHh-cCeEEEEECCCChHHHHHHhcccCceEEEEeCCC
Confidence 999999999999999999999999999999999999999888888 8999999998888888888833699999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhh
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQ 274 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~ 274 (447)
||+..+.||++|+++|+++|+++++|+++ +++.++|+++|+|++++|++|+++|+++.+||+++++. ++.+.+.....
T Consensus 160 NP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~ 239 (396)
T COG0626 160 NPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQR 239 (396)
T ss_pred CcccccccHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHH
Confidence 99999999999999999999999999999 88999999999999999999999999999999887655 44555433322
Q ss_pred hhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 275 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
...|..+++..||+++++++++..|++++++++..++++|++++. +|+||+++++|+|++++++++ |+|+++
T Consensus 240 ---~~~G~~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~---g~gg~~ 313 (396)
T COG0626 240 ---ANTGAVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMT---GYGGLF 313 (396)
T ss_pred ---hhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcC---CCceEE
Confidence 158999999999999999999999999999999999999999887 899999999999999999987 689999
Q ss_pred EEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013210 353 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 432 (447)
Q Consensus 353 ~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 432 (447)
+|++.+.+++.+|++.|+... +++|+|+++|++++|+.++|..++.+.+..+|+++++||+|+| .|+++++|++|
T Consensus 314 Sf~l~~~~~~~~f~~~L~l~~----~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVG-lEd~eDLi~Dl 388 (396)
T COG0626 314 SFELKNEEAAKKFLDSLKLFK----LAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVG-LEDVEDLIADL 388 (396)
T ss_pred EEEeCChHHHHHHHHhCCccE----EeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEec-CCCHHHHHHHH
Confidence 999996567899999999743 7999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHh
Q 013210 433 EKALSRM 439 (447)
Q Consensus 433 ~~al~~~ 439 (447)
.+||+++
T Consensus 389 ~~Al~~~ 395 (396)
T COG0626 389 EQALAKA 395 (396)
T ss_pred HHHHHhh
Confidence 9999875
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=487.75 Aligned_cols=376 Identities=42% Similarity=0.646 Sum_probs=324.0
Q ss_pred hHhhhc-CCCC-CCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEe
Q 013210 43 AALASA-RHEF-GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120 (447)
Q Consensus 43 ~~~~~~-~~~~-~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~t 120 (447)
|+++|+ ++.. ..+++++||||.++||.+++.+++ +.+.+. ...|.|+|.++|+...+|++||+++|++.++++
T Consensus 2 T~~vh~g~~~~~~~~~~v~~pi~~sstf~~~~~~~~-~~~~~~----~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~ 76 (386)
T PF01053_consen 2 TLLVHAGRDPDEDQTGAVNPPIYQSSTFVFDSAEEL-DAFAGE----EKGYIYSRYGNPTVRALEQRLAALEGGEDALLF 76 (386)
T ss_dssp HHHHHTTTTGGTSTTTBSS--B---SBBBBSSHHHH-HHHTTS----SSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEE
T ss_pred cceEeCCCCCCCCCCCCeeCCccccccCcccchHHH-HhhcCC----CCCcceeccccccHHHHHHHHHHhhcccceeec
Confidence 566774 4433 478999999999999999999887 666654 446999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCc
Q 013210 121 ASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTL 200 (447)
Q Consensus 121 sggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG 200 (447)
+||+.|+.+++.+++++||+|+++...|++++..+..++++ .|+++.++|..|+++|++++ +++|++|++|+|.||+.
T Consensus 77 ~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~-~gv~v~~~d~~d~~~l~~~l-~~~t~~v~~EspsNP~l 154 (386)
T PF01053_consen 77 SSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPR-FGVEVTFVDPTDLEALEAAL-RPNTKLVFLESPSNPTL 154 (386)
T ss_dssp SSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHH-TTSEEEEESTTSHHHHHHHH-CTTEEEEEEESSBTTTT
T ss_pred cchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcc-cCcEEEEeCchhHHHHHhhc-cccceEEEEEcCCCccc
Confidence 99999999999999999999999999999999999877777 89999999999999999999 88999999999999999
Q ss_pred cccCHHHHHHHHHhcC-CEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcC--hHHHHHHHHHhhhh
Q 013210 201 AVANIPELSRLAHDKG-VTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP--ANLVNSMMDLHQGA 276 (447)
Q Consensus 201 ~v~~l~~I~~la~~~g-i~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~--~~~~~~l~~~~~~~ 276 (447)
.+.|+++|+++||++| +++++|+++ +++.++|+.+|+|+++.|++|+++|+++.+||+++.+ +++.+.++..+.
T Consensus 155 ~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~-- 232 (386)
T PF01053_consen 155 EVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRR-- 232 (386)
T ss_dssp B---HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHH--
T ss_pred ccccHHHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhh--
Confidence 9999999999999998 999999999 7788999999999999999999999999999999865 477788877666
Q ss_pred hhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013210 277 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 354 (447)
Q Consensus 277 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 354 (447)
..|..+++..|++++++++++..|++++.+++..++++|++++. +|.||+++++|+|++++++++ |+|++++|
T Consensus 233 --~~G~~~~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---g~ggl~sf 307 (386)
T PF01053_consen 233 --LLGATLSPFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMS---GGGGLLSF 307 (386)
T ss_dssp --HHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCS---SCTSEEEE
T ss_pred --hcCccchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeeccc---ccCceeEE
Confidence 78999999999999999999999999999999999999999987 899999999999999999987 68889999
Q ss_pred EeCCHH-HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 355 DMETEE-KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 355 ~l~~~~-~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
++++.. .+.+|++.|+.. . +++|+|+.+|++++|+..+|..++++.++.+|+++++||||+| .|+.+++|++|.
T Consensus 308 ~l~~~~~~~~~f~~~l~l~---~-~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvG-lEd~~dLi~Dl~ 382 (386)
T PF01053_consen 308 ELKGGEEAARRFLDALKLF---S-IAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVG-LEDPDDLIADLE 382 (386)
T ss_dssp EESSHHHHHHHHHHH-SSS---E-ESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE---SS-HHHHHHHHH
T ss_pred EeccchhhhHhHHhhhhhH---h-hhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEec-cCCHHHHHHHHH
Confidence 999774 889999999973 3 7999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHH
Q 013210 434 KALS 437 (447)
Q Consensus 434 ~al~ 437 (447)
+||+
T Consensus 383 ~AL~ 386 (386)
T PF01053_consen 383 QALE 386 (386)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9985
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-64 Score=461.91 Aligned_cols=388 Identities=33% Similarity=0.514 Sum_probs=355.0
Q ss_pred CCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 38 WEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
.+.++|..+|+....+..++...|||++|+|.|++.+...+.|..+ ..++.|+|..||+...+|++||.++|.-..
T Consensus 5 ~~~f~T~~vHag~~d~~t~ara~PIyqtTsy~F~d~~haa~lF~l~----~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa 80 (426)
T COG2873 5 NWGFETLAVHAGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLK----EPGNIYTRIMNPTTDVLEERIAALEGGVAA 80 (426)
T ss_pred ccCcchhhhcCCCCCCCCCceecceeeeeeeecCCHHHHHHHhCCC----cCCceeeeccCchHHHHHHHHHHhhcchhh
Confidence 4578888888666677889999999999999999999998888765 346899999999999999999999999899
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
+.++||++|+..++..++++||+|+.+...|++++.++...+++ +|+++++++.+|++.++++| +++||+|++|+..|
T Consensus 81 ~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~-~Gi~v~fvd~~d~~~~~~aI-~~nTkavf~EtigN 158 (426)
T COG2873 81 LAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKR-LGIEVRFVDPDDPENFEAAI-DENTKAVFAETIGN 158 (426)
T ss_pred hhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHh-cCcEEEEeCCCCHHHHHHHh-CcccceEEEEeccC
Confidence 99999999999999999999999999999999999999888887 89999999999999999999 99999999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh--HHH--------
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA--NLV-------- 266 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~--~~~-------- 266 (447)
|.+.+.|+++|+++||++|+++|+|+++ +++.+.|.+.|+|++++|++||+||+|-.|||+++-.. ++.
T Consensus 159 P~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~ 238 (426)
T COG2873 159 PGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEF 238 (426)
T ss_pred CCccccCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCccc
Confidence 9999999999999999999999999999 77889999999999999999999999999999986321 111
Q ss_pred -------------H------HHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eee
Q 013210 267 -------------N------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVL 325 (447)
Q Consensus 267 -------------~------~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~ 325 (447)
+ .+.+.+....+..|.+++++.|++.+.+++++..|++++.+++..++++|++++. .|+
T Consensus 239 ~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~ 318 (426)
T COG2873 239 TTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVN 318 (426)
T ss_pred CCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeee
Confidence 1 1122344566789999999999999999999999999999999999999999987 899
Q ss_pred CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHH
Q 013210 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404 (447)
Q Consensus 326 ~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~ 404 (447)
||+++++|+|.++++++.. |+|++++|.+++. +...+|++.|+... ...++|++.|++.||++++|..+++++
T Consensus 319 YpgL~~~~~h~la~kyl~~--g~g~vltF~~kgg~ea~~~fi~~l~L~s----~laNvGD~rsLvIHPAsTTH~ql~~ee 392 (426)
T COG2873 319 YPGLASHPYHALAKKYLPK--GAGAVLTFGVKGGYEAGKKFIDALKLFS----HLANIGDARSLVIHPASTTHRQLSEEE 392 (426)
T ss_pred cCCCCCCcchhHHHhhccC--CCceEEEEEecChHHHHHHHHHHHHHHH----hhccccccceeEecCcccchhcCCHHH
Confidence 9999999999999999876 7899999999954 77899999999733 588999999999999999999999999
Q ss_pred HHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 405 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 405 ~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+.++|+++++||+|+| .|+++|+|.+|++||++
T Consensus 393 ~~~aGv~~~~IRlSVG-IEd~~DiiaDl~qAl~~ 425 (426)
T COG2873 393 QAAAGVTPDLIRLSVG-IEDIDDIIADLEQALEA 425 (426)
T ss_pred HHhcCCCCCcEEEEec-cCCHHHHHHHHHHHHhc
Confidence 9999999999999999 99999999999999975
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=489.54 Aligned_cols=410 Identities=85% Similarity=1.285 Sum_probs=362.1
Q ss_pred hcccccc-CCCCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHH
Q 013210 29 KSMLSTA-AAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQ 107 (447)
Q Consensus 29 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ 107 (447)
|+..||+ .++-||.+.++|+...+..+++++||||.|+||.+++.+++.+++.+..+.+...|.|+|..+|++++||+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~ 84 (418)
T PLN02242 5 KEKKSPAESKEEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQ 84 (418)
T ss_pred ccccCchhhcCCChHHHHhcCCCCCCCCCCccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHH
Confidence 3444443 566799999999776666668889999999999999999888888665332223589999999999999999
Q ss_pred HHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccC-C
Q 013210 108 MAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG-R 186 (447)
Q Consensus 108 ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~ 186 (447)
+|+++|.+.+++|+||++|+.+++.+++++||+|+++.+.|+++...+...+.+..|+++++++..|++++++++ ++ +
T Consensus 85 lA~l~g~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i-~~~~ 163 (418)
T PLN02242 85 MAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAV-VPGK 163 (418)
T ss_pred HHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhc-CcCC
Confidence 999999999999999999999999999999999999999999998877555544478999999988999999999 66 5
Q ss_pred ceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHH
Q 013210 187 TKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 266 (447)
Q Consensus 187 t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~ 266 (447)
|++|++++|+||+|.+.|+++|+++|+++|+++|+|++|+.+.+++..+|+|++++|+||+++++|+++||+++++++++
T Consensus 164 tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li 243 (418)
T PLN02242 164 TKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELV 243 (418)
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHH
Confidence 99999999999999999999999999999999999999987778888889999999999999999998889999999998
Q ss_pred HHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCC
Q 013210 267 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 346 (447)
Q Consensus 267 ~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~ 346 (447)
+.++..+.+.....|..+.++.|+..++.++++..|++++.+++++++++|++++.+|.||+++++|+|++++++++...
T Consensus 244 ~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~ 323 (418)
T PLN02242 244 NSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGY 323 (418)
T ss_pred HHHHHHhhhhhhccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCC
Confidence 88877654212356788889999999999999999999999999999999999988999999999999999999986555
Q ss_pred CcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC-H
Q 013210 347 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT-L 425 (447)
Q Consensus 347 g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~-~ 425 (447)
|+|++++|++++.+.+.+|+++++....+..+++|+|+++|++++|++++|..++.+.++..|+++++||||+| .|+ .
T Consensus 324 g~g~~~sf~l~~~~~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-lE~~~ 402 (418)
T PLN02242 324 GFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVG-YTGTL 402 (418)
T ss_pred CceeEEEEEECCHHHHHHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-CCCCH
Confidence 89999999998877899999999963112237999999999999999999999999999999999999999999 995 9
Q ss_pred HHHHHHHHHHHHHhh
Q 013210 426 DQRWSQFEKALSRMQ 440 (447)
Q Consensus 426 ~~~i~~l~~al~~~~ 440 (447)
+++|++|.+||++++
T Consensus 403 ~dli~dl~~al~~~~ 417 (418)
T PLN02242 403 EQRWSQFEKALSAMK 417 (418)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999874
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-61 Score=472.67 Aligned_cols=376 Identities=29% Similarity=0.424 Sum_probs=336.8
Q ss_pred chhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.+.++|+. .....+++++||||.++||.+++.. . ...|.|+|+++|+...|+++||+++|++.++
T Consensus 5 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~--------~----~~~~~Y~R~~npt~~~Le~~lA~leg~e~iv 72 (388)
T PRK08861 5 KPATIAVRTGIESDSQYHAVVPPIYLSTNYGFPAFG--------E----VPKYDYTRSGNPNRGLLEQTLSELESGKGAV 72 (388)
T ss_pred CcccceeECCCCCCCCCCCccCCcccCcceEeCCcC--------c----cCCccccCCCCchHHHHHHHHHHHhCCCeEE
Confidence 3556667744 3334468999999999999998731 1 2358899999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+|+||++|+.+++++++++||+|+++.+.|++....+.....+ .|+++.+++..|++++++++ +++|++|++++|+||
T Consensus 73 vt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~-~gi~v~~vd~~d~e~l~~~i-~~~tklV~lesP~NP 150 (388)
T PRK08861 73 VTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANK-GDFKVQFVDQSDAAALDAAL-AKKPKLILLETPSNP 150 (388)
T ss_pred EECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCC
Confidence 9999999999999999999999999999999887766444444 68999999988999999999 779999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGA 276 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~ 276 (447)
||.+.|+++|.++|+++|+++++|++| .+....|.++|+|++++|+||+++++++.+||+++. ++++.++++..+.
T Consensus 151 tG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~-- 228 (388)
T PRK08861 151 LVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGN-- 228 (388)
T ss_pred CCcccCHHHHHHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHh--
Confidence 999999999999999999999999999 566678888999999999999999998878899876 4567777776666
Q ss_pred hhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013210 277 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 354 (447)
Q Consensus 277 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 354 (447)
..|..+++..+++++++++++..|++++.+++..++++|++++. +|+||+++++|+|++|+++++ |+|++++|
T Consensus 229 --~~G~~~~p~~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~---g~gg~~sf 303 (388)
T PRK08861 229 --CIGATGTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQS---GFGSMLSF 303 (388)
T ss_pred --ccCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCC---CCCceEEE
Confidence 67999999999999999999999999999999999999999987 899999999999999999985 78999999
Q ss_pred EeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 355 DME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 355 ~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
+++ +.+.+.+|++.|+.. . +++|+|+++|++++|+.++|..++++++..+|+++++||||+| .|+.+++|++|+
T Consensus 304 ~~~~~~~~~~~f~~~l~l~---~-~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG-lE~~~dli~Dl~ 378 (388)
T PRK08861 304 EFAGSFEQLKVFVKALALF---S-LAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVG-LEDAQDLIADLD 378 (388)
T ss_pred EeCCCHHHHHHHHhcCCcc---e-EccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHH
Confidence 997 467788999999973 3 7999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHhhh
Q 013210 434 KALSRMQD 441 (447)
Q Consensus 434 ~al~~~~~ 441 (447)
+||+++.+
T Consensus 379 ~al~~~~~ 386 (388)
T PRK08861 379 QAFAKAAE 386 (388)
T ss_pred HHHHHHHh
Confidence 99998864
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=468.89 Aligned_cols=379 Identities=21% Similarity=0.356 Sum_probs=334.2
Q ss_pred chhhHhhhcCCCCC-CCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASARHEFG-EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~~~~~-~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.+.++|...... .+|+++||||.++||.+++.+++.+.|.+.. ...|.|+|.+||+++.||++||+++|++.++
T Consensus 5 ~~~t~~~~~~~~~~~~~~~v~~pi~~sstf~f~~~~~~~~~~~~~~---~~~~~YsR~~nPt~~~le~~la~LEg~~~a~ 81 (395)
T PRK08114 5 KLDTQLVNAGRSKKYTQGSVNSVIQRASSLVFDSVEAKKHATRNRA---NGELFYGRRGTLTHFSLQEAMCELEGGAGCA 81 (395)
T ss_pred CcchheEeCCCCCCCCCCCccCCeeCCCceecCCHHHHHHhhccCc---CCCccccCCCChhHHHHHHHHHHHhCCCeEE
Confidence 35566677443333 3489999999999999999988887775531 2358999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++|||+|+++++.+++++||+|+++...|+++...+...+++ .|+++.+++..|.+++++++ +++|++|++|+|+||
T Consensus 82 ~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~-~Gi~v~~vd~~d~~~l~~~l-~~~TrlV~~EtpsNp 159 (395)
T PRK08114 82 LYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSK-LGVTTTWFDPLIGADIAKLI-QPNTKVVFLESPGSI 159 (395)
T ss_pred EEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CCCceEEEEECCCCC
Confidence 9999999999999999999999999999999999988777776 89999999988999999999 789999999999999
Q ss_pred CccccCHHHHHHHHHhc--CCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh
Q 013210 199 TLAVANIPELSRLAHDK--GVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 275 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~--gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~ 275 (447)
+|.+.|+++|+++||++ |+++++|++| .++.++|.++|+|++++|+||+++|+++.++|+++.+++.++.++..+.
T Consensus 160 ~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~- 238 (395)
T PRK08114 160 TMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSY- 238 (395)
T ss_pred CCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHH-
Confidence 99999999999999998 4999999999 7777999999999999999999999999999988888877776665554
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|..+++..|++++++++++..|++++.+++..++++|++++. +|+||+++++|+|++++++++ |+|++++
T Consensus 239 ---~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~---g~gg~~s 312 (395)
T PRK08114 239 ---LMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFT---GSSGLFS 312 (395)
T ss_pred ---hccCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCC---CCceEEE
Confidence 67999999999999999999999999999999999999999987 899999999999999999986 6899999
Q ss_pred EEeCC---HHHHHHHHHHhhcccccccccccccCcccccc--ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013210 354 LDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMS--CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428 (447)
Q Consensus 354 ~~l~~---~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~--~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 428 (447)
|++++ .+.+.+|++.|+.. . +++|+|+++|+++ +|...++.. +.+ ..++.+++||+|+| .|+.+++
T Consensus 313 f~l~~~~~~~~~~~f~~~l~l~---~-~a~SlGg~~SLi~~~~~~~~~~~~-~~~---~~~~~~~liRlSvG-lEd~~DL 383 (395)
T PRK08114 313 FVLKKKLTDEQLANYLDNFSLF---S-MAYSWGGFESLILANQPEEIAAIR-PAG---EVDFTGTLIRLHIG-LEDVDDL 383 (395)
T ss_pred EEecCcccHHHHHHHHHhCCcc---e-eecccCCccceeccCCchhhhccC-Chh---HhcCCCCeEEEEec-cCCHHHH
Confidence 99974 56788999999973 3 7999999999998 454444433 333 34677799999999 9999999
Q ss_pred HHHHHHHHHHh
Q 013210 429 WSQFEKALSRM 439 (447)
Q Consensus 429 i~~l~~al~~~ 439 (447)
|++|.+||+++
T Consensus 384 i~Dl~~Al~~~ 394 (395)
T PRK08114 384 IADLAAGFARI 394 (395)
T ss_pred HHHHHHHHHhh
Confidence 99999999865
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=468.31 Aligned_cols=381 Identities=25% Similarity=0.389 Sum_probs=336.9
Q ss_pred hhhHhhhcCCCCC-CCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 41 PAAALASARHEFG-EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 41 ~~~~~~~~~~~~~-~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
+.+.++|+....+ .+|++++|||.++||.+++.+.+.+.+.+.. ...+.|+|..+|+...||+.||++++++.+++
T Consensus 5 ~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~---~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~ 81 (394)
T PRK09028 5 KATKIVSAGRDKKWTKGVINPPVFRASTVVFDTVAEMRHAAKNRA---NGEMFYGRRGTPTHFAFQAAIVELEGGAGTAL 81 (394)
T ss_pred ccceeEEcCCCCCCCCCCccCCeeCCCCcccCCHHHHHHHhccCc---cCCceecCCCCchHHHHHHHHHHHhCCCcEEE
Confidence 4566677443233 3489999999999999999988877765432 23588999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
|+||++|+++++.+++++||+||++++.|+++...+...+.+ .|+++.+++..+.+++++++ +++|++|++++|+||+
T Consensus 82 ~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~-~Gi~v~~v~~~~~e~l~~~l-~~~TklV~lespsNPt 159 (394)
T PRK09028 82 YPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKG-FGIETTYYDPMIGEGIRELI-RPNTKVLFLESPGSIT 159 (394)
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhh-cceEEEEECCCCHHHHHHhc-CcCceEEEEECCCCCC
Confidence 999999999999999999999999999999998877555555 79999999888889999999 7899999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 278 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~ 278 (447)
|.+.|+++|+++||++|+++++|++| .++.++|.++|+|++++|+||+++|+|+.+||+++.++++++.+...+.
T Consensus 160 g~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~---- 235 (394)
T PRK09028 160 MEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSY---- 235 (394)
T ss_pred CcHHHHHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHH----
Confidence 99999999999999999999999999 7777899999999999999999999999999999888888777775555
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 356 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l 356 (447)
..|..+++..|++++++++++..|++++.+++..++++|++++. +|+||+++++|+|++++++++ |+|++++|++
T Consensus 236 ~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~---g~gg~~sf~l 312 (394)
T PRK09028 236 LMGQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFS---GSNGLFSFVL 312 (394)
T ss_pred hcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhcc---CCCceEEEEE
Confidence 67999999999999999999999999999999999999999986 899999999999999999986 6899999999
Q ss_pred C--CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 357 E--TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 357 ~--~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
+ +.+.+.+|++.|+... +++|+|+.+|++++|+++++... ....|+.+++||||+| .|+.+++|++|.+
T Consensus 313 ~~~~~~~~~~f~~~l~l~~----~~~slG~~~sLv~~p~~~~~~~~----~~~~~~~~~liR~svG-lEd~~dLi~Dl~~ 383 (394)
T PRK09028 313 KQGDPKAVTALVEGMQHFK----MGFSWGGFESLILGVFGINKLRT----ATNWDFSKPLIRLHIG-LEDVDDLIADLEA 383 (394)
T ss_pred CCCCHHHHHHHHHhCCcce----EecccCCCcceeECCCCcCccCc----hhhhcCCCCeEEEEeC-cCCHHHHHHHHHH
Confidence 7 4567889999999733 79999999999999987765433 2336788899999999 9999999999999
Q ss_pred HHHHhhhc
Q 013210 435 ALSRMQDS 442 (447)
Q Consensus 435 al~~~~~~ 442 (447)
||++.+.+
T Consensus 384 Al~~~~~~ 391 (394)
T PRK09028 384 GFERYNAV 391 (394)
T ss_pred HHHHHHHH
Confidence 99987654
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=471.96 Aligned_cols=384 Identities=33% Similarity=0.569 Sum_probs=344.7
Q ss_pred chhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.+.++|+. .....++++.+|||.++||.+++.+++.+.+.+. .+.|.|+|..+|+++++|+++|+++|++.++
T Consensus 8 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i 83 (398)
T PRK08249 8 GVGTKAVWAGEKEYLPYGATQVPVVLSVAYGYDDIDEWYDVALGK----KPGHIYSRNTNPTVQAFEEKVRILEGAEAAT 83 (398)
T ss_pred CcccceeeCCCCCCCCCCCccCCccCCcceecCCHHHHHHhhcCC----cCCccccCCCChHHHHHHHHHHHHhCCCeEE
Confidence 3556677754 3334578999999999999999987777666543 2458999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+..++.+++++||+|+++.+.|+++...+...+++ .|+++.+++..|++++++++ +++|++|++++|+||
T Consensus 84 ~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~-~Gi~v~~vd~~d~e~l~~~i-~~~tklV~ie~p~NP 161 (398)
T PRK08249 84 AFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPR-MGVDVTLCETGDHEQIEAEI-AKGCDLLYLETPTNP 161 (398)
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhh-CCeEEEEcCCCCHHHHHHhc-CCCCeEEEEECCCCC
Confidence 9999999999999999999999999999999988777555555 79999999988999999999 788999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL 277 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~ 277 (447)
+|.+.|+++|.++|+++|+++|+|++|+ ++...+..+++|++++|+||+++++|+++||++++++++++.++..+.
T Consensus 162 tg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~--- 238 (398)
T PRK08249 162 TLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE--- 238 (398)
T ss_pred CCccCCHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHH---
Confidence 9999999999999999999999999994 554556677999999999999999999888999999999988887766
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..|..+++..+++++++++++..|++++.+++..+.++|++++. +|+||+++++|+|++++++++ |+|++++|+
T Consensus 239 -~~g~~~s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~sf~ 314 (398)
T PRK08249 239 -INGATMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMR---GFGGILSFV 314 (398)
T ss_pred -hcCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCceEEEE
Confidence 57888999999999999999999999999999999999999886 899999999999999999985 789999999
Q ss_pred eC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 356 ME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 356 l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
++ +.+.+.+|++.|+.. . +++|+|+.+|++++|+.++|..++.+.+..+|+++++||||+| .|+.+++|++|.+
T Consensus 315 ~~~~~~~~~~f~~~l~l~---~-~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~ 389 (398)
T PRK08249 315 LKGGMDTVKRLLPKLRYA---H-RAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVG-IEDTEDLIADLEQ 389 (398)
T ss_pred EcCCHHHHHHHHHhCCcc---e-EccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHH
Confidence 97 556688999999973 3 7999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHhhh
Q 013210 435 ALSRMQD 441 (447)
Q Consensus 435 al~~~~~ 441 (447)
||+.+..
T Consensus 390 al~~~~~ 396 (398)
T PRK08249 390 AFAHLES 396 (398)
T ss_pred HHHHhhh
Confidence 9998754
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-60 Score=472.15 Aligned_cols=396 Identities=30% Similarity=0.471 Sum_probs=345.7
Q ss_pred ccCCCCchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHh
Q 013210 34 TAAAWEDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112 (447)
Q Consensus 34 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~ 112 (447)
||.+..++.+.++|.. .....+|++++|||.++||.+++.+++.+.+... ...|.|+|..+|+++++|+.+|+++
T Consensus 2 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~----~~~~~y~R~~~p~~~~le~~lA~l~ 77 (433)
T PRK08134 2 PGMSPPGFDTLALHAGAAPDPATGARAVPIHLTTSFVFRDSDHAAALFNLE----RAGHVYSRISNPTVAVLEERVAALE 77 (433)
T ss_pred CCCCCCCcchhheeCCCCCCCCCCCccCCccCCCccccCCHHHHHHhhccc----ccCceeecCcChHHHHHHHHHHHHh
Confidence 5566667878888854 3345579999999999999999998887776543 2468999999999999999999999
Q ss_pred CCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEE
Q 013210 113 GTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYF 192 (447)
Q Consensus 113 g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i 192 (447)
|++.+++|+|||+|+++++.+++++||+||++..+|+++...+...+.+ .|++++++|.+|++++++++ +++|++|++
T Consensus 78 g~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~-~Gi~v~~vd~~d~~~l~~~i-~~~TklV~~ 155 (433)
T PRK08134 78 GGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRR-FGIETTFVKPGDIDGWRAAI-RPNTRLLFG 155 (433)
T ss_pred CCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhh-CCeEEEEECCCCHHHHHHhc-CCCCeEEEE
Confidence 9999999999999999999999999999999999999998887655555 79999999999999999999 889999999
Q ss_pred EcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHH-----
Q 013210 193 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV----- 266 (447)
Q Consensus 193 ~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~----- 266 (447)
++++||+|.++|+++|+++|+++|+++|+|++| .+....+..+|+|++++|.||+++++|+.+||+++....+.
T Consensus 156 e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~ 235 (433)
T PRK08134 156 ETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASG 235 (433)
T ss_pred ECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCcccccccc
Confidence 999999999999999999999999999999999 66667788889999999999999999999988876421100
Q ss_pred ------------------------HHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 267 ------------------------NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 267 ------------------------~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
..+...+.......|..+++..|+..+++++++..|++++.+++..++++|++++.
T Consensus 236 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~ 315 (433)
T PRK08134 236 KFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPA 315 (433)
T ss_pred ccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 00111111122356888999999999999999999999999999999999999976
Q ss_pred --eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCC
Q 013210 323 --KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399 (447)
Q Consensus 323 --~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~ 399 (447)
+|.||+++++|+|++++++++. |+|++++|+++ +.+.+.+|++.|+.. . +++|+|+.+|++++|+.++|..
T Consensus 316 V~~V~yP~l~~~p~~~~~~~~~~~--g~gg~~s~~l~~~~~~~~~f~~~l~l~---~-~~~slG~~~sL~~~p~~~~h~~ 389 (433)
T PRK08134 316 VARVAHPELESHPDHALAKRLLPR--GAGSVFSFDLKGGRAAGRKFIESLKLF---S-HLANVGDARSLVIHPASTTHFR 389 (433)
T ss_pred ccEEECCCCCCCccHHHHHHhCCC--CCceEEEEEecCCHHHHHHHHHhCCcc---e-eccccCCCCceeeCCCccCccc
Confidence 8999999999999999998843 68999999997 456788999999973 3 7999999999999999999999
Q ss_pred CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 400 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
++.+.++.+|+++++||||+| .|+.+++|++|.+||++++..
T Consensus 390 ~~~~~~~~~Gi~~~liRlsvG-lE~~~dli~dl~~Al~~~~~~ 431 (433)
T PRK08134 390 MDAAALAAAGIGEGTIRLSIG-LEDADDLIDDLKRALKAAEKA 431 (433)
T ss_pred CCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999 999999999999999987644
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-60 Score=469.98 Aligned_cols=390 Identities=28% Similarity=0.422 Sum_probs=341.5
Q ss_pred CCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 38 WEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
.++|.+.++|+......+++++||||.+|||.+++.+++...++.. .+.+.|+|..+|+++.+|+.||+++|++.+
T Consensus 4 ~~~~~t~~~~~g~~~~~~~~~~~PI~~sst~~f~~~~~~~~~~~~~----~~g~~ysR~~nPtv~~lE~~la~leg~~~a 79 (432)
T PRK06702 4 SWGKGTICVQGGYTPKNGEPRVLPLYQSTTYKYDTSDDLAALFNLE----AEGYIYTRIGNPTLAAFEQKLAELEGGVGA 79 (432)
T ss_pred CCCcchHheeCCCCCCCCCCccCCccCCcceecCCHHHHHHHHhcc----ccCceeECCCCcHHHHHHHHHHHHhCCCcE
Confidence 3467788888543334478999999999999999988777766543 246889999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-CHHHHHHhhccCCceEEEEEcCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
++|+|||+|+.+++.+++++||+||++.+.|.++...+...+.+ .|+++++++.. |+++++++| +++|++|++++|+
T Consensus 80 v~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~-~Gi~v~~vd~~~d~~~l~~~I-~~~Tk~I~~e~pg 157 (432)
T PRK06702 80 VATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRK-LGIDVTFFNPNLTADEIVALA-NDKTKLVYAESLG 157 (432)
T ss_pred EEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHhC-CcCCeEEEEEcCC
Confidence 99999999999999999999999999999999998887555555 79999999984 999999999 8899999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChH----------H
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN----------L 265 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~----------~ 265 (447)
||++.+.|+++|+++|+++|+++++|+++ +++.++|.++|+|++++|+||+++++++.+||+++.... +
T Consensus 158 nP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l 237 (432)
T PRK06702 158 NPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPEL 237 (432)
T ss_pred CccccccCHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccccc
Confidence 99999999999999999999999999999 777889999999999999999999999999998874221 1
Q ss_pred HH-----------------H-HHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eee
Q 013210 266 VN-----------------S-MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVL 325 (447)
Q Consensus 266 ~~-----------------~-l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~ 325 (447)
.+ . +.+.+.......|..+++..+++++++++++..|++++.+++..++++|++++. .|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~ 317 (432)
T PRK06702 238 VEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVN 317 (432)
T ss_pred ccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEE
Confidence 10 0 111111122356889999999999999999999999999999999999999986 799
Q ss_pred CCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHH
Q 013210 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404 (447)
Q Consensus 326 ~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~ 404 (447)
||+++++|+|++++++++. |+|++++|+++ +.+.+.+|++.|+.. . +++|+|+++|++.+|++++|..++.+.
T Consensus 318 yPgl~~~p~~~l~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~---~-~a~slGg~~Slv~~p~~~th~~~~~~~ 391 (432)
T PRK06702 318 YPGLDSNENYSLAQKYLKK--GASGVLTFGIKGGLEAAKEFIANVKLA---T-LVTHVADARTCVIHPASTTHRQLSAED 391 (432)
T ss_pred CCCCCCCccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCccc---e-eccccCCCCcceECCCCCCcccCCHHH
Confidence 9999999999999999853 68999999997 567788999999973 3 799999999999999999999999999
Q ss_pred HHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 405 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 405 ~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
++.+|+++++||||+| .|+.+++|++|++||+-=+
T Consensus 392 ~~~~Gi~~~liRlSvG-lEd~eDLi~Dl~~Al~~~~ 426 (432)
T PRK06702 392 QRLAGVTSDLIRLSVG-IEDVSDIIADLEAALVGGK 426 (432)
T ss_pred HHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhcCc
Confidence 9999999999999999 9999999999999997543
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-59 Score=468.15 Aligned_cols=389 Identities=32% Similarity=0.510 Sum_probs=339.9
Q ss_pred CchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
+++.+.++|.. .....+|++.+|||.++||.+++.+++.+.+... ...+.|+|..+|+...|++.||+++|++.+
T Consensus 7 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~Le~~lA~leg~~~a 82 (431)
T PRK08248 7 FRLETLAIHAGQEIDPTTGSRAVPIYQTTSYGFRDSEHAANLFSLK----EFGNIYTRIMNPTTDVFEKRIAALEGGIGA 82 (431)
T ss_pred CCcchhheeCCcCCCCCCCCccCCeeCCCccccCCHHHHHhhhccc----cCCceeECCCCchHHHHHHHHHHHhCCCcE
Confidence 34667777754 3344579999999999999999998887776543 235889999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
++|+||++|+.+++.+++++||+|+++.+.|+++...+...+.+ .|+++++++..|++++++++ ++++++|++++|+|
T Consensus 83 l~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~-~Gv~v~~vd~~d~e~l~~ai-~~~tklV~l~sp~N 160 (431)
T PRK08248 83 LAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPK-LGITVKFVDPSDPENFEAAI-TDKTKALFAETIGN 160 (431)
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHh-CCEEEEEECCCCHHHHHHhc-CCCCeEEEEECCCC
Confidence 99999999999999999999999999999999888777665655 79999999999999999999 77899999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHH----------
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV---------- 266 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~---------- 266 (447)
|+|.+.|+++|+++|+++|+++|+|++| .+....+.++|+|+++.|+||++|++|+++||+++.+.+..
T Consensus 161 PtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~ 240 (431)
T PRK08248 161 PKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGL 240 (431)
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccc
Confidence 9999999999999999999999999999 55666777889999999999999999999988887543210
Q ss_pred -------------HHH------HHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eee
Q 013210 267 -------------NSM------MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVL 325 (447)
Q Consensus 267 -------------~~l------~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~ 325 (447)
+.+ ...+.......|..+++..|++++++++++..|++++.+++..++++|++++. +|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~ 320 (431)
T PRK08248 241 TEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVS 320 (431)
T ss_pred cCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEE
Confidence 100 01111122367899999999999999999999999999999999999999986 899
Q ss_pred CCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHH
Q 013210 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404 (447)
Q Consensus 326 ~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~ 404 (447)
||+++++|+|+++++++++ |+|++++|+++ +.+.+.+|++.|+... +++|+|+.+|++++|++++|..+++++
T Consensus 321 yPgl~s~p~~~~~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~h~~~~~~~ 394 (431)
T PRK08248 321 YPGLPSHPSYELAKKYLPK--GQGAILTFGIKGGVEAGKKLIDSVKLFS----HLANVGDSKSLIIHPASTTHQQLSEEE 394 (431)
T ss_pred CCCCCCCccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCCcce----eccccCCCCeeeeCCCcCccccCCHHH
Confidence 9999999999999999853 68999999996 4567889999999733 799999999999999999999999999
Q ss_pred HHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 405 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 405 ~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+..+|+++++||||+| .|+.+++|++|++||++++
T Consensus 395 ~~~~gi~~~liRlsvG-lEd~~dL~~Dl~~Al~~~~ 429 (431)
T PRK08248 395 QLAAGVTPGLVRLSVG-TEAIDDILDDLRQAIRQSQ 429 (431)
T ss_pred HHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999 9999999999999999775
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-59 Score=462.66 Aligned_cols=384 Identities=36% Similarity=0.580 Sum_probs=341.2
Q ss_pred chhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.+.++|+. .....+|+++||||.++||.+++.+.+.+.|.+. ...|.|+|+++|.++++|+++|+++|++.++
T Consensus 3 ~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~av 78 (391)
T TIGR01328 3 TFATRAIHAGYPPKDQFGALTPPIYQTSTFVFDSCEQGGNRFAGQ----ESGYIYSRLGNPTVSNLEGRIAFLEGTEAAV 78 (391)
T ss_pred CcccceeeCCccCCCCCCCccCCcccCcceecCChHHHHHhhcCC----cCCCceeCCCCchHHHHHHHHHHHhCCCcEE
Confidence 3556667744 3445579999999999999999998888877543 2368999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+.+++.+++++||+|+++.+.|+++...+...... .|+++.+++.+|++++++++ +++|++|++++|+||
T Consensus 79 ~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~-~G~~~~~vd~~d~e~l~~~i-~~~tklV~le~p~Np 156 (391)
T TIGR01328 79 ATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTK-FGIQVDFINMAIPEEVKAHI-KDNTKIVYFETPANP 156 (391)
T ss_pred EECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhh-ccCCeEEEEECCCCC
Confidence 9999999999999999999999999999999888777665555 79999999999999999999 788999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL 277 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~ 277 (447)
+|.+.|+++|.++|+++|+++|+|++| .+....+...++|++++|++|++|++|+++||++++++++++.++.....
T Consensus 157 ~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~-- 234 (391)
T TIGR01328 157 TMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIK-- 234 (391)
T ss_pred CCcccCHHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHH--
Confidence 999999999999999999999999999 44555677789999999999999999998889999999988888754321
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
...|..+++..|++++++++++..|+++..++++.+.++|++++. .|.||+++++|+|++|+++++ |+|++++|+
T Consensus 235 ~~~g~~l~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~---~~g~~~s~~ 311 (391)
T TIGR01328 235 DMTGSVISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMR---MGGGMITFE 311 (391)
T ss_pred hCCCCCCCcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCCceEEEE
Confidence 134677888899999999999999999999999999999999875 899999999999999999986 689999999
Q ss_pred eC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 356 ME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 356 l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
++ +.+.+.+|++.|+... +++|+|+.+|++++|++++|..++.+++..+|+++++||||+| .|+.+++|++|++
T Consensus 312 ~~~~~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~ 386 (391)
T TIGR01328 312 LKGGFAGAKKLLNNLKLIR----LAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-LEDADDLIADLKQ 386 (391)
T ss_pred eCCCHHHHHHHHHhCCcce----EecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHH
Confidence 97 5567889999999733 6999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHh
Q 013210 435 ALSRM 439 (447)
Q Consensus 435 al~~~ 439 (447)
||+++
T Consensus 387 al~~~ 391 (391)
T TIGR01328 387 ALDAL 391 (391)
T ss_pred HHhhC
Confidence 99864
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-59 Score=446.08 Aligned_cols=383 Identities=37% Similarity=0.533 Sum_probs=343.7
Q ss_pred CchhhHhhhcCCCCCC--CCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe
Q 013210 39 EDPAAALASARHEFGE--HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA 116 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~--~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~ 116 (447)
.++.++++|...+... +++|.+||+.+++++|... +....-+....+|.|+|.++|+...++..|+++.|++.
T Consensus 20 ~~~~t~~~~~g~~~~~~~~~~v~~pI~~~~s~tfk~~-----~~~~~~~~~~~~~~Ysr~~nPt~~~le~~iaal~ga~~ 94 (409)
T KOG0053|consen 20 SHLDTNLLHAGQDPEKAIHNAVAPPIYATLSTTFKQD-----LNEGEHGGNLDGYDYSRSGNPTRDVLESGIAALEGAAH 94 (409)
T ss_pred cccchhhhhcccccchhccccccCceecccceeeccc-----CccccccccccccccccCCCCchHHHHHHHHHHhCCce
Confidence 4788999996655455 8999999995555555443 01111111112699999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 117 AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 117 ~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
+++++||+.|+..+++.++++|++|++....|.+++..++.+.++ +|++..+++.++++++++++ +++|++|++|+|.
T Consensus 95 ~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~-~gie~~~vd~~~~~~~~~~i-~~~t~~V~~ESPs 172 (409)
T KOG0053|consen 95 ALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPK-FGGEGDFVDVDDLKKILKAI-KENTKAVFLESPS 172 (409)
T ss_pred EEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHH-hCceeeeechhhHHHHHHhh-ccCceEEEEECCC
Confidence 999999999999999999999999999999999999999998886 99999999999999999999 7799999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhh
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQ 274 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~ 274 (447)
||++.+.||++|+++||++|+++++|+++ +++.++|+.+|+|++++|++|++||+++.|||.++.+ +++.++++..+.
T Consensus 173 NPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~ 252 (409)
T KOG0053|consen 173 NPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQE 252 (409)
T ss_pred CCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999 6668899999999999999999999999999999986 889999988876
Q ss_pred hhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 275 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
..|+.+++..+++..++++++..|++++.+++..++++|..++. +++||++++||+|++++++.++. +|+++
T Consensus 253 ----~lg~~~~p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g~--~G~l~ 326 (409)
T KOG0053|consen 253 ----DLGWCEDPFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKGG--YGGLS 326 (409)
T ss_pred ----HhcCCCCHHHHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcCC--cceEE
Confidence 89999999999999999999999999999999999999999877 79999999999999999999863 44566
Q ss_pred EEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013210 353 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 432 (447)
Q Consensus 353 ~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 432 (447)
.+.+.+.+.+.+|.+.|+... .++|+|+++|++++|+.++|.. +.+++...|+++++||+|+| .|+.++++.+|
T Consensus 327 ~~~~~~~~~a~kf~~~LK~~~----~a~SlG~~eSL~~~p~~mth~~-~~e~~~~~Gi~~~LVRvSVG-iEd~~dL~~d~ 400 (409)
T KOG0053|consen 327 SVIFGNEEHAKKFYDALKLFT----KAPSLGGNESLAEPPAIMTHAS-ELEEREKFGIDPNLVRVSVG-IEDIEDLIKDF 400 (409)
T ss_pred EEEcCCHHHHHHHHHhhhhhh----cccCcCccchhhcchhhhccCC-CHHHHHhcCCCCCcEEEEec-cCCHHHHHHHH
Confidence 666667888899999999743 6999999999999999999999 99999999999999999999 99999999999
Q ss_pred HHHHHHhh
Q 013210 433 EKALSRMQ 440 (447)
Q Consensus 433 ~~al~~~~ 440 (447)
.+||+.+.
T Consensus 401 ~~Al~~~~ 408 (409)
T KOG0053|consen 401 QQALEKAK 408 (409)
T ss_pred HHHHHhhc
Confidence 99998764
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-59 Score=461.30 Aligned_cols=381 Identities=34% Similarity=0.564 Sum_probs=339.1
Q ss_pred CchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
+++.+.++|+......++++.+|||.++||.+++++++...+.+. ...+.|+|..+|.++++|+++|+++|++.++
T Consensus 5 ~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~la~l~g~~~~v 80 (390)
T PRK08133 5 LGFDTLAVRAGQLRSPFGEHSEALFLTSSFVFESAAEAAARFAGE----EPGNIYSRFTNPTVTMFQERLAALEGAEACV 80 (390)
T ss_pred CCcchhheeCCCCCCCCCCccCCccCCCCcccCCHHHHHHhhcCC----cCCceeECCCChHHHHHHHHHHHHhCCCcEE
Confidence 346677788554345678999999999999999886655555332 2347799999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+|+||++|+.+++.+++++||+||++.+.|+++...+...+.. .|+++++++.+|++++++++ +++|++|++++|+||
T Consensus 81 ~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklV~ie~p~Np 158 (390)
T PRK08133 81 ATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFAR-FGIETTFVDLTDLDAWRAAV-RPNTKLFFLETPSNP 158 (390)
T ss_pred EECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCC
Confidence 9999999999999999999999999999999988877555555 79999999999999999999 789999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL 277 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~ 277 (447)
+|.+.|+++|.++|+++|+++|+|++| .+....+..+|+|++++|+||+++++|.++||++++++++++.+.....
T Consensus 159 tG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~--- 235 (390)
T PRK08133 159 LTELADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLR--- 235 (390)
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHH---
Confidence 999999999999999999999999999 5555667778999999999999999999999999998888777765544
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..|..+++..++.++++++++..|++++.+++..+.++|++++. .++||+++++|+|+++++++. |+|++++|+
T Consensus 236 -~~g~~~~~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---g~g~~~s~~ 311 (390)
T PRK08133 236 -TAGPTLSPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQK---GGGAIVSFE 311 (390)
T ss_pred -HhCCCCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCC---CCceEEEEE
Confidence 56778888899999999999999999999999999999999865 899999999999999999885 789999999
Q ss_pred eC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 356 ME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 356 l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
++ +.+.+.+|++.|+... +++|+|+++|++++|++++|..++.+.+..+|+++++||||+| .|+.+++|++|++
T Consensus 312 l~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~ 386 (390)
T PRK08133 312 VKGGREAAWRVIDATRLIS----ITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVG-LEDVADIKADLAR 386 (390)
T ss_pred EcCCHHHHHHHHHhCCcce----EeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHH
Confidence 97 5667889999999733 7999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHH
Q 013210 435 ALS 437 (447)
Q Consensus 435 al~ 437 (447)
||+
T Consensus 387 al~ 389 (390)
T PRK08133 387 GLA 389 (390)
T ss_pred Hhh
Confidence 996
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=460.42 Aligned_cols=389 Identities=29% Similarity=0.459 Sum_probs=339.5
Q ss_pred CchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
+++.+.++|+. .....+++++||||.++||.+++.+++.+.+... .+.|.|+|..+|+.+.+++.||+++|++.+
T Consensus 12 ~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~----~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~a 87 (436)
T PRK07812 12 WSFETKQIHAGQTPDPATNARALPIYQTTSYTFDDTDHAAALFGLA----EPGNIYTRIMNPTQDVVEQRIAALEGGVAA 87 (436)
T ss_pred CCcchhheeCCCCCCCCCCCccCCCcCCCCcccCCHHHHHHhhcCC----cCCccccCCCCchHHHHHHHHHHHhCCCeE
Confidence 45668788854 3344468999999999999999988777766432 346889999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC-CCCHHHHHHhhccCCceEEEEEcCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD-ISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
++++||++|+.+++.+++++||+|+++...|+++...+...+++ .|+++.+++ ..|++++++++ +++|++|++++|+
T Consensus 88 v~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~-~Gi~v~~vdd~~d~e~l~~ai-~~~tklV~ie~~s 165 (436)
T PRK07812 88 LLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPK-LGIEVSFVEDPDDLDAWRAAV-RPNTKAFFAETIS 165 (436)
T ss_pred EEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhc-CeEEEEEECCCCCHHHHHHhC-CCCCeEEEEECCC
Confidence 99999999999999999999999999999999998877665666 799999996 56899999999 7899999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHH---------
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV--------- 266 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~--------- 266 (447)
||+|.+.|+++|.++|+++|+++|+|+++ .+....+.++|+|+++.|+||++|++|..+||+++....+.
T Consensus 166 Np~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~ 245 (436)
T PRK07812 166 NPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGF 245 (436)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCcccccccccccc
Confidence 99999999999999999999999999999 66677888889999999999999999999988887532110
Q ss_pred -------------H-----HHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeC
Q 013210 267 -------------N-----SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLY 326 (447)
Q Consensus 267 -------------~-----~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~ 326 (447)
+ .+.+.+.......|..+++..|++++++++++..|++++.+++..++++|++++. +|+|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~y 325 (436)
T PRK07812 246 TTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNY 325 (436)
T ss_pred ccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 0 0001111122367999999999999999999999999999999999999999986 8999
Q ss_pred CCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHH
Q 013210 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 405 (447)
Q Consensus 327 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~ 405 (447)
|+++++|+|++++++++. |+|++++|++. +.+.+.+|++.|+... +++|+|+.+|++++|+.++|..++++++
T Consensus 326 Pgl~s~p~~~~~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~a~slG~~~sLi~~p~~~~h~~~~~~~~ 399 (436)
T PRK07812 326 AGLPSSPWYERAKRLAPK--GTGAVLSFELAGGVEAGKAFVNALTLHS----HVANIGDVRSLVIHPASTTHSQLTPEEQ 399 (436)
T ss_pred CCCCCCccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCCcce----EecccCCCcceeeCCCCCCcccCCHHHH
Confidence 999999999999998843 68999999996 4566889999999743 7999999999999999999999999999
Q ss_pred HhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 406 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 406 ~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+.+|+++++||||+| .|+.+++|++|.+||++++
T Consensus 400 ~~~gi~~~liRlSvG-lEd~~dli~dl~~Al~~~~ 433 (436)
T PRK07812 400 LATGVTPGLVRLAVG-IEGIDDILADLEAGFAAAK 433 (436)
T ss_pred HhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhhh
Confidence 999999999999999 9999999999999999775
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-59 Score=455.67 Aligned_cols=376 Identities=24% Similarity=0.400 Sum_probs=331.4
Q ss_pred CCCchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC
Q 013210 37 AWEDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115 (447)
Q Consensus 37 ~~~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~ 115 (447)
+.+++.+.++|+. .....+|++.+|||.+|||.+++.+++.. . ...|.|+|..+|+++.+++.|+.+.+.+
T Consensus 9 ~~~~~~t~~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~----~----~~~y~YsR~gnPt~~~Le~~la~le~~~ 80 (395)
T PRK05967 9 EKAGINTRLAHDGNDPGDYHGFVNPPVVHASTVLFPDAETMAT----R----GQKYTYGTRGTPTTDALCKAIDALEGSA 80 (395)
T ss_pred ccCCcccceeeCCCCCCCCCCCccCCccCCcceecCChHHhhc----c----cCCCccCCCCChHHHHHHHHHHHHhCCC
Confidence 3345677788854 33455799999999999999999876532 1 2368999999999999999999999988
Q ss_pred eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcC
Q 013210 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI 195 (447)
Q Consensus 116 ~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~ 195 (447)
..++++||++|+++++.+++++||+||++.+.|+++...+...+++ .|+++.+++..+.+++++++ +++|++|++++|
T Consensus 81 ~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~-~Gi~v~~vd~~~~e~l~~al-~~~TklV~lesP 158 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKR-LGVEVEYYDPEIGAGIAKLM-RPNTKVVHTEAP 158 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHh-cCeEEEEeCCCCHHHHHHhc-CcCceEEEEECC
Confidence 8899999999999999999999999999999999998877666666 89999999888888999999 788999999999
Q ss_pred CCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh
Q 013210 196 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 274 (447)
Q Consensus 196 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~ 274 (447)
+||++.+.|+++|+++|+++|+++++|++| .++.++|.++|+|++++|++|+++|+|+.++|+++.+++.++++...+.
T Consensus 159 sNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~ 238 (395)
T PRK05967 159 GSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHG 238 (395)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999 7777899999999999999999999999999998888877777765544
Q ss_pred hhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 275 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
..|..+++..|++++++++++..|++++.+++..++++|++++. +|+||+++++|+|++++++++ |+|+++
T Consensus 239 ----~~G~~~~p~da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~---g~gg~~ 311 (395)
T PRK05967 239 ----TLGLCAGPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFS---GASGIF 311 (395)
T ss_pred ----HcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCC---CCceEE
Confidence 67999999999999999999999999999999999999999986 899999999999999999986 789999
Q ss_pred EEEeC-C----HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013210 353 CLDME-T----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 427 (447)
Q Consensus 353 ~~~l~-~----~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 427 (447)
+|+++ + .+.+.+|+++|+... +++|+|+.+|+++|+ . ++.+.+...|+.+++||||+| .|+.++
T Consensus 312 sf~l~~~~~~~~~~~~~f~~~l~l~~----~~~slG~~~sLi~~~-~-----~~~~~~~~~~~~~~liRlSvG-lEd~~d 380 (395)
T PRK05967 312 SFVLAAGPEKGKAKAHAFLDALEIFG----LGYSWGGYESLALHV-K-----LGDRTVAKAPYAGPVIRLQIG-LEDVPD 380 (395)
T ss_pred EEEEcCCCcccHHHHHHHHHhCCcce----EccCCCCcceeeeeC-C-----CChhHhhhccCCCCeEEEEec-cCCHHH
Confidence 99997 3 577889999999733 799999999999873 2 233333345788899999999 999999
Q ss_pred HHHHHHHHHHHhh
Q 013210 428 RWSQFEKALSRMQ 440 (447)
Q Consensus 428 ~i~~l~~al~~~~ 440 (447)
+|++|.+||+++.
T Consensus 381 Li~Dl~~Al~~~~ 393 (395)
T PRK05967 381 LKADLERGFAAAS 393 (395)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998764
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=458.69 Aligned_cols=386 Identities=32% Similarity=0.505 Sum_probs=342.1
Q ss_pred CCCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe
Q 013210 37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA 116 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~ 116 (447)
+++++.+.++|.......++++.+|||.+++|.+++.+.+.+.+... .+.|.|+|+.+|....+|+++|+++|++.
T Consensus 7 ~~~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~Le~~lA~l~G~~~ 82 (398)
T PRK07504 7 RKWRPATRLVHSGTLRSQFGETSEALFLTQGFVYDTAEAAEARFKGE----DPGFIYSRYSNPTVDMFEKRMCALEGAED 82 (398)
T ss_pred ccCCcccceeeCCCCCCCCCCCcCCeECCCCccCCCHHHHHHHhccC----cCCceeecCCCchHHHHHHHHHHHhCCCe
Confidence 45567777777553445678899999999999999887776655443 34689999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 117 AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 117 ~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
.+++++|+.|+..++.+++++||+|+++.+.|+++...+....++ .|+++++++..|++++++++ +++|++|++++|+
T Consensus 83 ~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~e~l~~ai-~~~tklV~lesp~ 160 (398)
T PRK07504 83 ARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPR-YGIESTLVDGLDLDNWEKAV-RPNTKVFFLESPT 160 (398)
T ss_pred eeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhh-cCeEEEEECCCCHHHHHHhc-CcCceEEEEECCC
Confidence 889999999999988888999999999999999988777555555 79999999988999999999 7899999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHHHhh
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQ 274 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~ 274 (447)
||+|.+.|+++|.++|+++|+++|+|++| .+....+.++|+|++++|+||+++++|+++||+++++++.+. .++....
T Consensus 161 NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~ 240 (398)
T PRK07504 161 NPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFR 240 (398)
T ss_pred CCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999 455567778899999999999999999999899988877664 3443333
Q ss_pred hhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 275 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
..|..+++..|+.++++++++..|++++.+++..+.++|++++. +|+||+++++|+|++++++++ |+|+++
T Consensus 241 ----~~g~~~s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~---g~g~~~ 313 (398)
T PRK07504 241 ----HTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMT---GGSTLV 313 (398)
T ss_pred ----HhCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCC---CCccEE
Confidence 56788999999999999999999999999999999999999875 899999999999999999986 789999
Q ss_pred EEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 353 CLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 353 ~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
+|+++ +.+.+.+|++.|+... +++|+|+++|++++|++++|..++++.++..|+++++||||+| .|+.+++|++
T Consensus 314 s~~~~~~~~~~~~~~~~l~~~~----~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~d 388 (398)
T PRK07504 314 AFELKGGKEAAFRFLNALKIVR----ISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAG-LEDTDDLIED 388 (398)
T ss_pred EEEeCCCHHHHHHHHHhCCcce----ecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHH
Confidence 99996 5677889999999733 7999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHhh
Q 013210 432 FEKALSRMQ 440 (447)
Q Consensus 432 l~~al~~~~ 440 (447)
|.+||++++
T Consensus 389 l~~al~~~~ 397 (398)
T PRK07504 389 LAAALKKVR 397 (398)
T ss_pred HHHHHHhhh
Confidence 999998764
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=457.12 Aligned_cols=381 Identities=30% Similarity=0.462 Sum_probs=340.1
Q ss_pred CCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 38 WEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
.+++.|.++|+......++++++|||.++||.+++.+.+.+.+.+. ...|.|+|+++|+++++|+++|+++|.+.+
T Consensus 13 ~~~~~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~----~~~~~Y~r~~~p~~~~le~~lA~l~g~~~a 88 (403)
T PRK07810 13 GVSQATIGVRGGLLRSGFEETAEALYLTSGYVYESAAAAEAAFTGE----LDRFVYSRYGNPTVSMFEERLRLIEGAEAC 88 (403)
T ss_pred cCCcchhheeCCCCCCCCCCccCCccCCCccccCCHHHHHHHhccC----cCCcceeCCCCchHHHHHHHHHHHhCCCcE
Confidence 3577788888543345578999999999999999988777776543 235889999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
++++||+.|+..++.+++++||+|+++...|++++..+...+.+ .|+++.+++..|++++++++ +++|++|++++|+|
T Consensus 89 l~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~ai-~~~tklV~~esp~N 166 (403)
T PRK07810 89 FATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPR-WGVETVFVDGEDLSQWEEAL-SVPTQAVFFETPSN 166 (403)
T ss_pred EEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCceEEEEECCCC
Confidence 99999999999999999999999999998998887776555555 79999999999999999999 78899999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHHHhhh
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQG 275 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~~ 275 (447)
|+|.+.|+++|.++|+++|+++++|++| .+....+..+|+|++++|++|+++++|+++||+++++++.+. .++....
T Consensus 167 ptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~- 245 (403)
T PRK07810 167 PMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR- 245 (403)
T ss_pred CCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHH-
Confidence 9999999999999999999999999999 555667778899999999999999999999999998877654 4554433
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|..+++..+++++++++++..|++++.+++.++.++|++++. +|.||+++++|+|++++++++ |+|++++
T Consensus 246 ---~~g~~~s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~---g~g~~~s 319 (403)
T PRK07810 246 ---HTGPALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMS---GGGTVVT 319 (403)
T ss_pred ---HhCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCC---CCceEEE
Confidence 56778999999999999999999999999999999999999876 899999999999999999986 7899999
Q ss_pred EEeCC-----HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013210 354 LDMET-----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428 (447)
Q Consensus 354 ~~l~~-----~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 428 (447)
|++++ .+.+.+|+++|+.. . +++|+|+.+|++++|+.++|..++.+.+..+|+++++||||+| .|+.+++
T Consensus 320 ~~l~~~~~~~~~~~~~f~~~l~l~---~-~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svG-lE~~~dl 394 (403)
T PRK07810 320 FELDAPEDAAKKRAFEVLDKLRVI---D-ISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVG-LEDTDDL 394 (403)
T ss_pred EEEcCCCCcCHHHHHHHHHhCCce---E-EeccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHH
Confidence 99974 46678999999973 3 7999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHH
Q 013210 429 WSQFEKAL 436 (447)
Q Consensus 429 i~~l~~al 436 (447)
|++|.+||
T Consensus 395 i~dl~~Al 402 (403)
T PRK07810 395 IADLDRAL 402 (403)
T ss_pred HHHHHHhh
Confidence 99999997
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-58 Score=459.24 Aligned_cols=390 Identities=28% Similarity=0.410 Sum_probs=337.0
Q ss_pred CCCchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC
Q 013210 37 AWEDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115 (447)
Q Consensus 37 ~~~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~ 115 (447)
+.+++.+.++|+. .....+|+++||||.|+||.+++++++.+.+... ...+.|+|..+|+++.+|+++|+++|++
T Consensus 10 ~~~~~~t~~~~~~~~~~~~~~~~~~Pi~~sstf~~~~~~~~~~~~~~~----~~~~~Y~r~~~pt~~~le~~la~l~g~~ 85 (437)
T PRK05613 10 DQWGFETRSIHAGQSVDSDTSARNLPIYQTTSYVFDSAEHAKQRFALE----DLGPIYSRLTNPTVEALENRIASLEGGV 85 (437)
T ss_pred ccCCcchHheeCCCCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccc----cCCceeeCccChHHHHHHHHHHHHhCCC
Confidence 3445677778855 3344579999999999999999987776655432 2358899999999999999999999999
Q ss_pred eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC-CCCHHHHHHhhccCCceEEEEEc
Q 013210 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD-ISDHEMVNSAIVQGRTKVLYFES 194 (447)
Q Consensus 116 ~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~-~~d~~~l~~~i~~~~t~lV~i~~ 194 (447)
..++++||++|+.+++.+++++||+||++..+|+++...+...+.+ .|+++++++ ..|++++++++ +++|++|++++
T Consensus 86 ~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~-~Gi~v~~vd~~~d~e~l~~~l-~~~tk~V~~e~ 163 (437)
T PRK05613 86 HAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNR-LGIEVTFVENPDDPESWQAAV-QPNTKAFFGET 163 (437)
T ss_pred eEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHh-cCeEEEEECCCCCHHHHHHhC-CccCeEEEEEC
Confidence 9999999999999999998999999999999999997666555555 799999997 45899999999 78899999999
Q ss_pred CCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHH-------
Q 013210 195 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV------- 266 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~------- 266 (447)
+.||+|.++|+++|+++|+++|+++|+|+++ .+..+++.++|+|++++|+||+++|+|+.+||+++.+.++.
T Consensus 164 ~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~ 243 (437)
T PRK05613 164 FANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDG 243 (437)
T ss_pred CCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccc
Confidence 9999999999999999999999999999999 55567888899999999999999999988889888532210
Q ss_pred -----------------------H-H-HHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 267 -----------------------N-S-MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 267 -----------------------~-~-l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
+ . +.+.+.......|..+++..|++++++++++..|++++.+++..++++|++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp 323 (437)
T PRK05613 244 KPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHE 323 (437)
T ss_pred cccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0 0 00111112336799999999999999999999999999999999999999998
Q ss_pred C--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCC
Q 013210 322 L--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 398 (447)
Q Consensus 322 ~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~ 398 (447)
. +|.||+++++|+|+++++++.. |+|++++|+++ +.+.+.+|++.|+... +++|+|+.+|++++|++++|.
T Consensus 324 ~V~~V~yPgl~~~p~~~~~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sLv~~p~~~~h~ 397 (437)
T PRK05613 324 KVAKVNFAGLKDSPWYATKEKLGLK--YTGSVLSFDIKGGKDEAWAFIDALKLHS----NLANIGDVRSLVVHPATTTHS 397 (437)
T ss_pred CcceEECCCCCCCccHHHHHHhcCC--CCceEEEEEecCCHHHHHHHHHhCCcce----EccCCCCCchhhcCCCccCCc
Confidence 6 8999999999999999998642 68999999997 5577889999999743 799999999999999999999
Q ss_pred CCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 399 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 399 ~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.++++.+|+++++||||+| .|+.+++|++|.+||+++
T Consensus 398 ~~~~~~~~~~Gi~~~liRlsvG-lE~~~dLi~Dl~~Al~~~ 437 (437)
T PRK05613 398 QSDEAGLARAGITQATVRLSVG-IEDIDDIIADLEGGFAAI 437 (437)
T ss_pred cCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999 999999999999999863
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-58 Score=458.54 Aligned_cols=387 Identities=31% Similarity=0.465 Sum_probs=336.1
Q ss_pred hhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 41 PAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 41 ~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
+.+.++|.. .....++++++|||.++||.+++.+++.+.+.+. ...|.|+|..+|+...++++||+++|.+.+++
T Consensus 3 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~ 78 (425)
T PRK06084 3 LETLAIHAGYSPDPTTKAVAVPIYQTTSYAFDDTQHGADLFDLK----VPGNIYTRIMNPTNDVLEQRVAALEGGVGALA 78 (425)
T ss_pred cchhheeCCcCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccc----cCCccccCCCCchHHHHHHHHHHHhCCCceeE
Confidence 345566643 3344568999999999999999998887776543 23589999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
++||++|+.+++.+++++||+|+++.+.|+++...+...++. .|+++.+++..|++++++++ +++|++|++++|+||+
T Consensus 79 ~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~-~gi~v~~~d~~d~e~le~ai-~~~tklV~lesp~NPt 156 (425)
T PRK06084 79 VASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPR-IGIETRFAAHDDIAALEALI-DERTKAVFCESIGNPA 156 (425)
T ss_pred ehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhccc-ceeEEEEECCCCHHHHHHHh-ccCCcEEEEeCCCCCC
Confidence 999999999999999999999999999999888877666655 78999999988999999999 7789999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHH--HH---------
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--VN--------- 267 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~--~~--------- 267 (447)
|.+.|+++|.++|+++|+++|+|++| .+....+..+|+|++++|+||+++++|+++||+++.+..+ ..
T Consensus 157 G~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~ 236 (425)
T PRK06084 157 GNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLN 236 (425)
T ss_pred CeecCHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccc
Confidence 99999999999999999999999999 5666778888999999999999999999999988763321 00
Q ss_pred -------------------HHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeC
Q 013210 268 -------------------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLY 326 (447)
Q Consensus 268 -------------------~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~ 326 (447)
.+...+.......|..+++..|++++++++++..|++++.+++..++++|++++. +|.|
T Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~y 316 (425)
T PRK06084 237 TPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKY 316 (425)
T ss_pred cCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 0001111112357889999999999999999999999999999999999999986 8999
Q ss_pred CCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHH
Q 013210 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 405 (447)
Q Consensus 327 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~ 405 (447)
|+++++|+|.++++++.+ |+|++++|++. +.+.+.+|++.|+... +++|+|+++|++++|+.++|..++++.+
T Consensus 317 P~l~~~p~~~~~~~~~~g--~~gg~~s~~~~~~~~~~~~f~~~l~l~~----~~~slG~~~slv~~p~~~~h~~~~~~~~ 390 (425)
T PRK06084 317 AGLPDHPEHELARRYMGG--KPASILSFGIKGGQAAGARFIDALKLVV----RLVNIGDAKSLACHPASTTHRQLNDEEL 390 (425)
T ss_pred CCCCCcccHHHHHHhCCC--CcceEEEEEecCCHHHHHHHHHhCCcce----eccccCCCceeeeCCCcCCcccCCHHHH
Confidence 999999999999999862 37999999997 4456789999999743 7999999999999999999999999999
Q ss_pred HhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 406 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 406 ~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+.+|+++++||||+| .||.+++|++|.+||++.+
T Consensus 391 ~~~gi~~~liR~svG-lEd~~dLi~dl~~Al~~~~ 424 (425)
T PRK06084 391 EKAGVSRDMVRLSIG-IEHIDDIIADLAQALDASK 424 (425)
T ss_pred HhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhhh
Confidence 999999999999999 9999999999999998764
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-58 Score=454.14 Aligned_cols=374 Identities=30% Similarity=0.432 Sum_probs=331.3
Q ss_pred hhhHhhh-cCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 41 PAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 41 ~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
+.+.++| |......+|+++|||+.++||.+++.++ ...|.|+|+.+|+.+.++++||+++|.+.+++
T Consensus 5 ~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~------------~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~ 72 (386)
T PRK08045 5 QATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNE------------PRAHDYSRRGNPTRDVVQRALAELEGGAGAVL 72 (386)
T ss_pred cccceeEcCCCCCCCCCCccCCccCCcceecCCccc------------cCCceeeCCCCccHHHHHHHHHHHhCCCeEEE
Confidence 4455566 4333455799999999999999987531 12588999999999999999999999989999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
|+||++|+.+++.+++++||+|+++.+.|++++..+..+... .++++.+++..|++++++++ +++|++|++++|+|||
T Consensus 73 ~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~-~gi~v~~vd~~d~e~l~~~l-~~~tklV~l~sP~NPt 150 (386)
T PRK08045 73 TNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVESPSNPL 150 (386)
T ss_pred ECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh-CCeEEEEeCCCCHHHHHHhc-ccCCeEEEEECCCCCC
Confidence 999999999999999999999999999999888777555544 56788888877999999999 7789999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL 277 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~ 277 (447)
|.+.|+++|.++|+++|+++++|++| .+....+..+++|++++|+||+++++++.++|+++. ++++++.+...+.
T Consensus 151 G~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~--- 227 (386)
T PRK08045 151 LRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN--- 227 (386)
T ss_pred CEecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHH---
Confidence 99999999999999999999999999 555567788899999999999999888777788866 6778787776555
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..|..+++..+++++++++++..|++++.+++..++++|++++. +|+||+++++|+|++++++++ |+|++++|.
T Consensus 228 -~~g~~~~p~~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~---g~g~~~s~~ 303 (386)
T PRK08045 228 -NIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGAMLSFE 303 (386)
T ss_pred -hcCCCCCHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCC---CCCceEEEE
Confidence 67888999999999999999999999999999999999999986 899999999999999999985 789999999
Q ss_pred eC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 356 ME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 356 l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
++ +.+.+.+|++.|+... +++|+|+.+|++++|+.++|..++++.+..+|+++++||||+| .|+.+++|++|.+
T Consensus 304 ~~~~~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~ 378 (386)
T PRK08045 304 LDGDEQTLRRFLGGLSLFT----LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIADLEN 378 (386)
T ss_pred ecCcHHHHHHHHHhcccee----EeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHH
Confidence 97 4566789999999733 7999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHhh
Q 013210 435 ALSRMQ 440 (447)
Q Consensus 435 al~~~~ 440 (447)
||+++.
T Consensus 379 al~~~~ 384 (386)
T PRK08045 379 GFRAAN 384 (386)
T ss_pred HHHHhh
Confidence 998764
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=452.74 Aligned_cols=371 Identities=30% Similarity=0.530 Sum_probs=328.6
Q ss_pred CCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHH
Q 013210 53 GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLM 132 (447)
Q Consensus 53 ~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~ 132 (447)
..+|+++|||+.++||.+++.+++.+.+.+. ...|.|+|.++|+++.+|++||+++|++..+.++||++|+..++.
T Consensus 5 ~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~----~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~ 80 (397)
T PRK05939 5 IEHGAVHKPIHTSVTYGYEDARDLIDVFQGK----KPGFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFL 80 (397)
T ss_pred CCCCCccCCccCCCCeecCCHHHHHHhhcCC----cCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHH
Confidence 3458999999999999999988888877653 235899999999999999999999999999999999999999999
Q ss_pred HhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHH
Q 013210 133 QLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212 (447)
Q Consensus 133 ~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la 212 (447)
+++++||+|+++.+.|+++...+.. +.+ .|+++++++..|+++|++++ +++|++|++++|+||+|.+.|+++|+++|
T Consensus 81 all~~Gd~Vv~~~~~y~~t~~~~~~-l~~-~G~~v~~v~~~d~e~l~~~l-~~~tklV~vesp~NptG~v~dl~~I~~la 157 (397)
T PRK05939 81 TLLRAGDHLVSSQFLFGNTNSLFGT-LRG-LGVEVTMVDATDVQNVAAAI-RPNTRMVFVETIANPGTQVADLAGIGALC 157 (397)
T ss_pred HHcCCCCEEEECCCccccHHHHHHH-HHh-cCCEEEEECCCCHHHHHHhC-CCCCeEEEEECCCCCCCCHHhHHHHHHHH
Confidence 9999999999999999988776633 344 79999999999999999999 88999999999999999999999999999
Q ss_pred HhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChH--------HHHH----------HHHHh
Q 013210 213 HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN--------LVNS----------MMDLH 273 (447)
Q Consensus 213 ~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~--------~~~~----------l~~~~ 273 (447)
+++|+++|+|++| .+..+++..+|+|+++.|+||+++++|+++||+++.+.. +... +...+
T Consensus 158 ~~~gi~livD~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
T PRK05939 158 RERGLLYVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIR 237 (397)
T ss_pred HHcCCEEEEECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHH
Confidence 9999999999999 666778888899999999999999999999887764321 1111 11222
Q ss_pred hhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013210 274 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL 351 (447)
Q Consensus 274 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~ 351 (447)
.......|..+++..+++++++++++..|++++.+++..++++|++++. +|.||+++++|+|+++++++. |+|++
T Consensus 238 ~~~~~~~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~---g~g~l 314 (397)
T PRK05939 238 KKGLRDMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFR---HYGGL 314 (397)
T ss_pred HHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhcc---CCceE
Confidence 2222357899999999999999999999999999999999999999986 899999999999999999985 78999
Q ss_pred EEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 352 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 352 ~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
++|++++.+.+.+|++.|+... +++|+|+++|++++|+.++|..++.+.++.+|+++++||||+| .||++++|++
T Consensus 315 ~sf~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svG-lEd~~dLi~d 389 (397)
T PRK05939 315 LSFELADGIDCFDFLNRLKLVI----KATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVG-IEDEADLIAD 389 (397)
T ss_pred EEEEeCCHHHHHHHHHhCCcce----EccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeC-CCCHHHHHHH
Confidence 9999986667889999998632 6999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHH
Q 013210 432 FEKALSR 438 (447)
Q Consensus 432 l~~al~~ 438 (447)
|.+||++
T Consensus 390 l~~Al~~ 396 (397)
T PRK05939 390 FEQALDA 396 (397)
T ss_pred HHHHHhc
Confidence 9999974
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-57 Score=454.41 Aligned_cols=389 Identities=26% Similarity=0.405 Sum_probs=337.0
Q ss_pred CCCCchhhHhhhcCC-CCCCCCccccccccccccccCCHHHHHHhhcCCCCC------CCCCccccCCCCchHHHHHHHH
Q 013210 36 AAWEDPAAALASARH-EFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGP------DRDFFIYSRHFNPTVLNLSRQM 108 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~-~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~------~~~~~~~~r~~~~~~~~l~~~i 108 (447)
.+.+++.+.++|+.. ....+|+++||||.+|||.+++.+++.+.+....+. ....|.|+|+.+|+...|++.|
T Consensus 13 ~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~~l 92 (427)
T PRK07049 13 NRELHPETQMLNYGYDPELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRL 92 (427)
T ss_pred CCcCCcccceeeCCCCCCCCCCCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHHHH
Confidence 344566777787543 333479999999999999999998888776543221 1235889999999999999999
Q ss_pred HHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee-EEEeCCCCHHHHHHhhc----
Q 013210 109 AALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT-TTFVDISDHEMVNSAIV---- 183 (447)
Q Consensus 109 a~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~-~~~v~~~d~~~l~~~i~---- 183 (447)
|+++|.+.+++++||++|+.+++.+++++||+|+++.|.|+++...+...+.. .|++ +.+.+..|++++++++.
T Consensus 93 A~leg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~-~Gi~~v~~~~~~d~~~l~~~l~~~~~ 171 (427)
T PRK07049 93 AVYEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRN-FGVGAVGFADGLSEAAIGAAAEAAAA 171 (427)
T ss_pred HHHhCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHh-cCcEEEEEeCCCCHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999998876555554 6887 44444557888877662
Q ss_pred cCCceEEEEEcCCCCCccccCHHHHHHHHHh------cCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccC-CCCee
Q 013210 184 QGRTKVLYFESISNPTLAVANIPELSRLAHD------KGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISG-GADII 255 (447)
Q Consensus 184 ~~~t~lV~i~~~~NptG~v~~l~~I~~la~~------~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~-~g~~i 255 (447)
++++++|++++|+||||.+.|+++|.++++. +++++++|++| +++...+...++|+++.|+||++|+ +|.|+
T Consensus 172 ~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~ 251 (427)
T PRK07049 172 KGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVA 251 (427)
T ss_pred CCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEE
Confidence 2579999999999999999999999999987 89999999998 6666677788999999999999996 67765
Q ss_pred EEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCC--CC
Q 013210 256 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGL--ED 331 (447)
Q Consensus 256 gG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~--~~ 331 (447)
|++++++++++.+...+. ..|..+++..++++++.++++..|++++.++++.+.++|++++. +|+||++ ++
T Consensus 252 -G~vv~~~~l~~~l~~~~~----~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~ 326 (427)
T PRK07049 252 -GAVLGRKALIRQVRALRS----AIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPD 326 (427)
T ss_pred -EEEECCHHHHHHHHHHHH----hcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCC
Confidence 999999999988887766 66888999999999999999999999999999999999999975 8999985 99
Q ss_pred CchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCC
Q 013210 332 HPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 410 (447)
Q Consensus 332 ~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~ 410 (447)
+|+|++++++++ |+|++++|+++ +.+.+.+|++.|+.. . +++|+|+.+|++++|+.++|..++.+.+..+|+
T Consensus 327 ~~~~~~~~~~~~---g~g~~~s~~~~~~~~~~~~f~~~l~l~---~-~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi 399 (427)
T PRK07049 327 SAYGAVYKRQCT---GAGSTFSFDIKGGQAAAFRFLNALQIF---K-LAVSLGGTESLASHPASMTHSGVPADVRERIGV 399 (427)
T ss_pred CccHHHHHhhCC---CCccEEEEEEcCCHHHHHHHHHcCccc---E-EcccCCCCCceeeCCCccccccCCHHHHHhcCC
Confidence 999999999985 78999999997 456688999999973 3 799999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 411 SAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 411 ~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
++++||||+| .|+.+++|++|.+||++
T Consensus 400 ~~~liR~svG-lE~~~dl~~dl~~al~~ 426 (427)
T PRK07049 400 LESTIRLSIG-IEHPDDLIADLAQALDA 426 (427)
T ss_pred CcCeEEEEeC-cCCHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999974
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=450.48 Aligned_cols=377 Identities=29% Similarity=0.470 Sum_probs=330.7
Q ss_pred hhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEe
Q 013210 41 PAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120 (447)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~t 120 (447)
..+.++|+......+++++||||.++||.+++.+. +.+. ...|.|+|..+|.++++|+.+|+++|++.+++|
T Consensus 3 ~~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~----~~~~----~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~~ 74 (385)
T PRK08574 3 RGTDAVRGYRGSDPYGSLQPPIYLTALFRQEGEAY----PSDR----GFDLKYSREENPTLRPLEEALAKLEGGVDALAF 74 (385)
T ss_pred ccceeeecCCCCCCCCCccCCccCCcceecCcchh----hcCC----cCCceEECCCCccHHHHHHHHHHHhCCCcEEEe
Confidence 34555665433345789999999999998876522 2221 235889999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccC-CceEEEEEcCCCCC
Q 013210 121 ASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG-RTKVLYFESISNPT 199 (447)
Q Consensus 121 sggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~t~lV~i~~~~Npt 199 (447)
+||++|+..++.+++++||+|+++.+.|+++...+... .. .|+++.+++. |++++++++ ++ +|++|++++|+||+
T Consensus 75 ~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~-~~-~g~~v~~~~~-d~~~l~~~i-~~~~tklV~ie~p~NPt 150 (385)
T PRK08574 75 NSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSL-EK-FGVKVVLAYP-STEDIIEAI-KEGRTKLVFIETMTNPT 150 (385)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHh-hc-cCcEEEEECC-CHHHHHHhc-CccCceEEEEECCCCCC
Confidence 99999999999999999999999999999998877543 44 7888888765 689999999 65 89999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEE-EcChHHHHHHHHHhhhhh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGAL 277 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~ 277 (447)
|.+.|+++|+++|+++|+++++|++| .++.+.+...|+|++++|+||+++++|+++||++ +.+++++++++..+.
T Consensus 151 G~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~--- 227 (385)
T PRK08574 151 LKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR--- 227 (385)
T ss_pred CEecCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH---
Confidence 99999999999999999999999999 6666778888999999999999999998888955 557888888876665
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..|..+++..|+.++++++++..|+++..+++.++.++|++++. +|+||+++++|+|+++++++++ .|+|++++|+
T Consensus 228 -~~g~~~~p~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~-~g~g~~~s~~ 305 (385)
T PRK08574 228 -RLGTIMQPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGK-DLYGGVVSFR 305 (385)
T ss_pred -hcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCC-CCcceEEEEE
Confidence 56888889999999999999999999999999999999999876 8999999999999999999852 2689999999
Q ss_pred eC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 356 ME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 356 l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
++ +.+.+.+|+++|+... +++|+|+.+|++++|++++|..++++.++.+|+++++||||+| .|+.+++|++|.+
T Consensus 306 l~~~~~~~~~~~~~l~l~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~dl~~ 380 (385)
T PRK08574 306 VKGGRDAVLKFLRSLKLIK----PSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVG-LEDVEDLIEDLDQ 380 (385)
T ss_pred eCCCHHHHHHHHHcCCcce----EccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHH
Confidence 96 5677899999999733 7999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHh
Q 013210 435 ALSRM 439 (447)
Q Consensus 435 al~~~ 439 (447)
||+++
T Consensus 381 al~~~ 385 (385)
T PRK08574 381 ALGSI 385 (385)
T ss_pred HHhcC
Confidence 99764
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=450.68 Aligned_cols=374 Identities=35% Similarity=0.554 Sum_probs=334.5
Q ss_pred hhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChH
Q 013210 45 LASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGM 124 (447)
Q Consensus 45 ~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt 124 (447)
++|+......++++.+|||.++||.+++.+++.+.+.+. ...|.|+|+.+|...++++.+|+++|++.+++++||+
T Consensus 4 ~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~sG~ 79 (380)
T TIGR01325 4 AIRGGKERTEFREHAEALFLTSSFVYDSAAHAADRFAGE----IPGFVYSRYANPTVAAFEERIAALEGAERAVATATGM 79 (380)
T ss_pred eEECCCCCCCCCCccCCeeCCcceecCCHHHHHHhhccc----cCCcceecCCCchHHHHHHHHHHHhCCCcEEEECCHH
Confidence 445433335578899999999999999887666666543 2358899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC
Q 013210 125 SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 204 (447)
Q Consensus 125 ~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~ 204 (447)
+|+.+++.+++++||+|+++.+.|+++...+...+.+ .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.|
T Consensus 80 ~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~-~g~~v~~v~~~d~~~l~~~i-~~~tklV~le~p~np~g~~~d 157 (380)
T TIGR01325 80 SAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPR-FGIEVSFVDPTDLNAWEAAV-KPNTKLVFVETPSNPLGELVD 157 (380)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHH-hCCEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCeeeC
Confidence 9999999999999999999999998887776555555 79999999999999999999 778999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCC
Q 013210 205 IPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT 283 (447)
Q Consensus 205 l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~ 283 (447)
+++|.++|+++|+++|+|++| .+....+..+|+|+++.|+||+++++|.++||++++++++++.++.... ..|..
T Consensus 158 l~~I~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~----~~g~~ 233 (380)
T TIGR01325 158 IAALAELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLR----HTGPA 233 (380)
T ss_pred HHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHH----hhCCC
Confidence 999999999999999999999 4555677788999999999999999999999999999888888876554 56778
Q ss_pred ccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH
Q 013210 284 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK 361 (447)
Q Consensus 284 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~ 361 (447)
+++..++.++++++++..|++++.+++..+.++|++++. +|.||+++++|+|+++++++. |+|++++|++++.+.
T Consensus 234 ~~p~~a~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~---g~g~~~s~~l~~~~~ 310 (380)
T TIGR01325 234 MSPFNAWVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQS---GGGTVIGFDVADRAA 310 (380)
T ss_pred CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCC---CCceEEEEEECCHHH
Confidence 888889999999999999999999999999999999975 899999999999999999985 789999999987777
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
+.+|++.|+... +++|+|+++|++.+|++++|..++++.+...|+++++||||+| .|+.+++|++|.+||
T Consensus 311 ~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al 380 (380)
T TIGR01325 311 AWKVLDAVELVS----ITNNLGDAKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVG-LEDVDDLIADLKRAL 380 (380)
T ss_pred HHHHHHcCCcce----EcccCCCCCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHhhC
Confidence 899999999733 7999999999999999999999999999999999999999999 999999999999986
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-57 Score=449.32 Aligned_cols=384 Identities=36% Similarity=0.529 Sum_probs=340.5
Q ss_pred chhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.+.++|+. ...+.+|+++|||+.++||.+++.+++.+.+.+. ...|.|+|+.+|.++.+|+.+|+++|++..+
T Consensus 9 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i 84 (403)
T PRK07503 9 GFSTRAIHHGYDPLDHGGALVPPVYLTATFAFPTAEYGAECFAGE----EEGHFYSRISNPTLALLEQRMASLEGGEAAV 84 (403)
T ss_pred CccchheeCCCCCCCCCCCccCCcccCcceecCChHHHHHhhccc----cCCceeeCCCCchHHHHHHHHHHHhCCCcEE
Confidence 4556667744 3445579999999999999999998888887654 3468999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+.+++.+++++||+|+++.+.|+++...+...+.. .|+++.+++.+|++++++++ +++|++|++++|+||
T Consensus 85 ~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklV~le~p~NP 162 (403)
T PRK07503 85 ALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGE-FGVTVRHVDLTDPAALKAAI-SDKTRMVYFETPANP 162 (403)
T ss_pred EEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhh-CCEEEEEeCCCCHHHHHHhc-CccCcEEEEeCCCCC
Confidence 9999999999999999999999999999998877666555555 79999999999999999999 778999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHH--hhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL--HQG 275 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~--~~~ 275 (447)
+|.+.|+++|.++|+++|+++|+|++| .+....+..+++|++++|+||+++++|+++||+++.+++++++++.. +.
T Consensus 163 tG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~- 241 (403)
T PRK07503 163 NMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKD- 241 (403)
T ss_pred CCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHh-
Confidence 999999999999999999999999999 44455666779999999999999999877789999988888887643 32
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|..+++..|+++++.++++..|++++.+++..+.++|++++. .|.||+++++|+|++++++++ |+|++++
T Consensus 242 ---~~g~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~---~~g~~~s 315 (403)
T PRK07503 242 ---MTGAVMSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMA---LPGGMIA 315 (403)
T ss_pred ---CcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCCceEE
Confidence 45788899999999999999999999999999999999999875 789999999999999999875 6899999
Q ss_pred EEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013210 354 LDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 432 (447)
Q Consensus 354 ~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 432 (447)
|.++ +.+.+.+|++.|+.. . +++|+|+++|++++|.+.+|..+++++++.+|+++++||||+| .|+.+++|++|
T Consensus 316 ~~~~~~~~~~~~~~~~l~l~---~-~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl 390 (403)
T PRK07503 316 FELKGGIAAGRRFMNALQLF---A-RAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVG-LEDVADILADL 390 (403)
T ss_pred EEECCCHHHHHHHHHhCCcc---e-eecccCCCCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEe-cCCHHHHHHHH
Confidence 9997 556678999999863 3 6899999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhh
Q 013210 433 EKALSRMQD 441 (447)
Q Consensus 433 ~~al~~~~~ 441 (447)
.+||+++..
T Consensus 391 ~~Al~~~~~ 399 (403)
T PRK07503 391 AQALDACAV 399 (403)
T ss_pred HHHHHHHHH
Confidence 999998754
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=447.10 Aligned_cols=388 Identities=39% Similarity=0.545 Sum_probs=342.3
Q ss_pred CCCCchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC
Q 013210 36 AAWEDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114 (447)
Q Consensus 36 ~~~~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~ 114 (447)
++++++.+.++|.. .....++++++|++.++||.+++.+++.+.+... ..++.|+|+.+|...+||+.||+++|.
T Consensus 4 ~~~~~~~t~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~r~~~p~~~~Le~~iA~~~g~ 79 (400)
T PRK06234 4 IKKMGFATKAIHGGHIGDKQFGSLATPIYQTSTFIFDSAEQGGRRFAGE----ESGYIYSRLGNPTSTEVENKLALLEGG 79 (400)
T ss_pred cccCCccchheECCCCCCCCCCCccCCcccccceecCChHHHHHhhccC----cCCCcccCCCCccHHHHHHHHHHHhCC
Confidence 45556667777744 3345579999999999999999987776666442 235779999999999999999999999
Q ss_pred CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEc
Q 013210 115 EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 194 (447)
Q Consensus 115 ~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~ 194 (447)
+.+++++||++|+.+++.+++++||+|+++.+.|+.+...+...+.. .|+++++++..|++++++++ +++|++|++++
T Consensus 80 ~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~e~l~~~i-~~~tklI~ies 157 (400)
T PRK06234 80 EAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTR-YGVEVTFVDTSNLEEVRNAL-KANTKVVYLET 157 (400)
T ss_pred CcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhh-CCeEEEEECCCCHHHHHHHh-ccCCeEEEEEC
Confidence 99999999999999999999999999999999999888776555555 79999999999999999999 78899999999
Q ss_pred CCCCCccccCHHHHHHHHHhc--CCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH
Q 013210 195 ISNPTLAVANIPELSRLAHDK--GVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 271 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~--gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~ 271 (447)
|+||+|.+.|+++|.++|+++ |+++++|++| .+....+...++|++++|+||+++++|+++||++++++++++.++.
T Consensus 158 P~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~ 237 (400)
T PRK06234 158 PANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKL 237 (400)
T ss_pred CCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHH
Confidence 999999999999999999997 9999999999 4444566777999999999999999999888999999988887764
Q ss_pred HhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013210 272 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG 349 (447)
Q Consensus 272 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g 349 (447)
.... ...|..+++..++..+++++++..|++++.+++.++.++|++++. +|+||+++++|+|++++++++ |+|
T Consensus 238 ~~~~--~~~g~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~---~~g 312 (400)
T PRK06234 238 FGIK--DMTGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMS---LPG 312 (400)
T ss_pred HHHH--HhcCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCC---CCC
Confidence 3211 145788899999999999999999999999999999999999876 899999999999999999886 689
Q ss_pred cEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013210 350 GLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428 (447)
Q Consensus 350 ~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 428 (447)
++++|+++ +.+.+.+|++.|+.. + +++|+|+++|++++|++++|..++++.++..|+++++||||+| .|+.+++
T Consensus 313 ~l~s~~l~~~~~~~~~f~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG-lE~~~dl 387 (400)
T PRK06234 313 AMISFELKGGVEEGKVVMNNVKLA---T-LAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVG-LEDVDDI 387 (400)
T ss_pred ceEEEEecCcHHHHHHHHHhCCcc---e-EeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeC-CCCHHHH
Confidence 99999997 456688999999974 3 7999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHh
Q 013210 429 WSQFEKALSRM 439 (447)
Q Consensus 429 i~~l~~al~~~ 439 (447)
|++|.+||+++
T Consensus 388 ~~dl~~al~~~ 398 (400)
T PRK06234 388 IADLKQALDLI 398 (400)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-57 Score=445.58 Aligned_cols=372 Identities=33% Similarity=0.536 Sum_probs=329.7
Q ss_pred hhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 41 PAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 41 ~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
+.+.++|.. .....+|+++||||.++||.+++.. . ...|.|+|..+|++..|++++|+++|++.+++
T Consensus 3 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~----~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~ 70 (380)
T PRK06176 3 MQTKLIHGGISEDTTTGAVSVPIYQTSTYRQDAIG--------R----PKGYEYSRSGNPTRFALEELIADLEGGVKGFA 70 (380)
T ss_pred ccceeeECCCCCCCCCCCccCCcccCCceecCCCC--------C----cCCCcccCCCChhHHHHHHHHHHHhCCCCEEE
Confidence 445556643 3334478999999999999888731 1 23589999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
++||+.|+.+++ .++++||+|+++.+.|++....+...+.+ .|+++++++..|++++++++ +++|++|++++|+||+
T Consensus 71 ~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~-~gi~v~~vd~~d~e~l~~ai-~~~t~lV~lesP~Npt 147 (380)
T PRK06176 71 FASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVK-NGLSCTIIDTSDLSQIKKAI-KPNTKALYLETPSNPL 147 (380)
T ss_pred ECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHh-cCeEEEEcCCCCHHHHHHhc-CcCceEEEEECCCCCC
Confidence 999999998766 57799999999999999988777666555 79999999999999999999 7889999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL 277 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~ 277 (447)
|.+.|+++|.++|+++|+++|+|++| .+....+..+++|++++|++|+++++++.+||+++. ++++.++++..+.
T Consensus 148 g~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~--- 224 (380)
T PRK06176 148 LKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQN--- 224 (380)
T ss_pred ceecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHH---
Confidence 99999999999999999999999999 445556778899999999999999999888898876 4567777776665
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..|..+++..++...++++++..|++++.+++..+.++|++++. +++||+++++|+|+++++++. |+|++++|+
T Consensus 225 -~~G~~~~~~~~~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~~s~~ 300 (380)
T PRK06176 225 -AIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMR---GFSGMLSFT 300 (380)
T ss_pred -HhcCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEEEE
Confidence 56777888889999999999999999999999999999999876 899999999999999999885 789999999
Q ss_pred eCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013210 356 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 356 l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
+++.+.+.+|+++|+.. . +++|+|+.+|++++|+.++|..++++.++.+|+++++||||+| .||.+++|++|.+|
T Consensus 301 ~~~~~~~~~f~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~dl~~A 375 (380)
T PRK06176 301 LKNDSEAVAFVESLKLF---I-LGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVG-IEHEQDLLEDLEQA 375 (380)
T ss_pred ECCHHHHHHHHHcCCcc---e-EccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHHH
Confidence 98777889999999973 3 7999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHh
Q 013210 436 LSRM 439 (447)
Q Consensus 436 l~~~ 439 (447)
|+++
T Consensus 376 l~~~ 379 (380)
T PRK06176 376 FAKI 379 (380)
T ss_pred Hhhc
Confidence 9864
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-57 Score=451.06 Aligned_cols=374 Identities=29% Similarity=0.469 Sum_probs=329.9
Q ss_pred CCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 38 WEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
+.++.+.++|.......++++++|||.++||.+++... ...|.|+|.++|..+.+++.+|+++|.+.+
T Consensus 84 ~~~~~t~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~------------~~~~~Y~r~gnpt~~aLE~~lA~leg~e~a 151 (464)
T PLN02509 84 EASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIE------------NGPYDYTRSGNPTRDALESLLAKLDKADRA 151 (464)
T ss_pred CCCcchHheeCCCCCCCCCCccCCccccceecCccccc------------cCCCccCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 45677888886544455789999999999998876310 235889999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
++++||++|+.+++ .++++||+||++.+.|+++...+...+.+ .|+++.+++..|++++++++ +++|++|++++|+|
T Consensus 152 i~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~-~G~~v~~vd~~d~e~l~~ai-~~~TklV~lesPsN 228 (464)
T PLN02509 152 FCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTNLDEVAAAI-GPQTKLVWLESPTN 228 (464)
T ss_pred EEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHH-CCeEEEEeCCCCHHHHHHhC-CcCCeEEEEECCCC
Confidence 99999999987655 57899999999999999988777555555 79999999988999999999 88999999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhh
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQG 275 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~ 275 (447)
|+|.+.|+++|+++|+++|+++|+|++| .++...+..+++|++++|++|+++++|+.+||+++. ++.+.+.++..+.
T Consensus 229 PtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~- 307 (464)
T PLN02509 229 PRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN- 307 (464)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHH-
Confidence 9999999999999999999999999999 555567778899999999999999999888899876 4455565554444
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|..+++..|++.+++++++..|++++.++++++.++|++++. +|+||+++++|+|.+++++++ |+|++++
T Consensus 308 ---~~g~~l~p~~A~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~---g~gg~~s 381 (464)
T PLN02509 308 ---SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK---GAGSVFS 381 (464)
T ss_pred ---hcCCCcCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCC---CCceEEE
Confidence 45677889999999999999999999999999999999999976 899999999999999999986 7899999
Q ss_pred EEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 354 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
|.+.+.+.+.+|++.|+.. . +++|+|+++|++++|+.++|..+++++++++|+++++||||+| .|+.+++|++|+
T Consensus 382 f~~~~~~~~~~f~~~l~l~---~-~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvG-lE~~~DLi~Dl~ 456 (464)
T PLN02509 382 FITGSVALSKHLVETTKYF---S-IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLISDLD 456 (464)
T ss_pred EEeCCHHHHHHHHHcCCcc---e-EcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHH
Confidence 9998777788999999963 3 7999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHH
Q 013210 434 KALSR 438 (447)
Q Consensus 434 ~al~~ 438 (447)
+||+.
T Consensus 457 ~Al~~ 461 (464)
T PLN02509 457 IAFRT 461 (464)
T ss_pred HHHcc
Confidence 99974
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-56 Score=444.65 Aligned_cols=376 Identities=32% Similarity=0.488 Sum_probs=330.5
Q ss_pred chhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.+.++|.. .....+|+++|||+.|+||.+++.+++.+++.+. ...|.|+|+++|++++|++.+|+++|.+..+
T Consensus 5 ~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al 80 (386)
T PRK06767 5 HMETALIHHGYTSEEHKGSLTPPLFQTSTFTFETAQQGEASFAGV----DPSYIYSRLGNPTVKLFEERMAVLEGGEEAL 80 (386)
T ss_pred CcccceeeCCCCCCCCCCCccCCccCccceecCCHHHHHHhhccC----cCCccccCCCCcchHHHHHHHHHHhCCCcEE
Confidence 4566677744 3334568999999999999999998888888654 2358899999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+.+++.+++++||+|+++.+.|+++...+.....+ .|+++.+++..|++++++++ +++|++|++++|+||
T Consensus 81 ~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~-~gi~~~~~~~~d~~~l~~~i-~~~tklV~lesp~Np 158 (386)
T PRK06767 81 AFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEK-FMITHSFCDMETEADIENKI-RPNTKLIFVETPINP 158 (386)
T ss_pred EECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhh-cCeEEEEeCCCCHHHHHHhh-CcCceEEEEeCCCCC
Confidence 9999999999999999999999999999999988877555554 68889998888999999999 778999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH-Hhhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-LHQGA 276 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-~~~~~ 276 (447)
+|.+.|+++|.++|+++|+++|+|++| .+....+...|+|++++|+||+++++|+++||+++++++.+..+.. .+.
T Consensus 159 tG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~-- 236 (386)
T PRK06767 159 TMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRK-- 236 (386)
T ss_pred CceecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHH--
Confidence 999999999999999999999999999 4445566777999999999999999999988999999888776543 333
Q ss_pred hhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013210 277 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 354 (447)
Q Consensus 277 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 354 (447)
..|+.+++..+++.+++++++..|++++++++.+++++|++++. .+.|| +|++++++++ +.|++++|
T Consensus 237 --~~g~~~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~---~~gg~vsf 305 (386)
T PRK06767 237 --DIGGIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMK---RGGGVISF 305 (386)
T ss_pred --HhCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCC---CCCceEEE
Confidence 45677788888999999999999999999999999999999865 57776 6789999886 68999999
Q ss_pred EeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 355 DME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 355 ~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
+++ +.+.+.+|+++|+.. + +++|+|+++|++++|++++|..++++++..+|+++++||||+| .|+.+++|++|.
T Consensus 306 ~l~~~~~~~~~f~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG-lE~~~dl~~dl~ 380 (386)
T PRK06767 306 SIKGGKEETQAFINDLHFI---T-IAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVG-LESWEDIVSDLE 380 (386)
T ss_pred EEcCCHHHHHHHHHhCCcc---E-EecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHH
Confidence 997 456788999999974 4 7999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
+||+++
T Consensus 381 ~al~~~ 386 (386)
T PRK06767 381 QALKKI 386 (386)
T ss_pred HHHhhC
Confidence 999854
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=443.19 Aligned_cols=372 Identities=33% Similarity=0.469 Sum_probs=327.9
Q ss_pred hhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 41 PAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 41 ~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
+.+.++|.. .....+++++|||+.++||.+++.. +...|.|+|+.+|....+++.+|+++|.+.+++
T Consensus 4 ~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~------------~~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~ 71 (382)
T TIGR02080 4 QATIAVRSGLNSDTQYGCVVPPIYLSTTYNFTGFN------------EPRAYDYSRSGNPTRDLLQQALAELEGGAGAVV 71 (382)
T ss_pred cccceeecCCCCCCCCCCccCCeeCCceeEeCCcC------------ccCCCcccCCCCchHHHHHHHHHHHhCCCcEEE
Confidence 345566643 2233469999999999999886531 012478999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
|+||++|+.+++.+++++||+|+++.+.|++++..+..+... .++++.+++.+|++++++++ +++|++|++++|+|||
T Consensus 72 ~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~-~~~~v~~~d~~d~~~l~~ai-~~~tklV~l~~p~NPt 149 (382)
T TIGR02080 72 TNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKK-GCFRVLFVDQGDEQALRAAL-AQKPKLVLIETPSNPL 149 (382)
T ss_pred EcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh-cCeEEEEECCCCHHHHHHhc-CcCceEEEEECCCCCC
Confidence 999999999999999999999999999999888777555444 57888888888999999999 7789999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL 277 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~ 277 (447)
|.+.|+++|.++|+++|+++++|++| .+....+..+++|++++|+||+++++++.++|+++. ++++++++...+.
T Consensus 150 G~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~--- 226 (382)
T TIGR02080 150 LRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWAN--- 226 (382)
T ss_pred CEecCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHH---
Confidence 99999999999999999999999999 455556777799999999999999877666788765 6788888877666
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..|..+++..+++++++++++..|++++.+++..+.++|++++. +|+||+++++|+|+++++++. |+|++++|+
T Consensus 227 -~~g~~~sp~~a~l~lr~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~s~~ 302 (382)
T TIGR02080 227 -NLGVTGGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQK---GFGAMLSFE 302 (382)
T ss_pred -ccCCCCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCCceEEEE
Confidence 67888999999999999999999999999999999999999987 899999999999999999875 789999999
Q ss_pred eC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 356 ME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 356 l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
++ +.+.+.+|++.|+.. . +++|+|+.+|++++|++++|..+++++++.+|+++++||||+| .|+.+++|++|.+
T Consensus 303 ~~~~~~~~~~f~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-lE~~~dl~~dl~~ 377 (382)
T TIGR02080 303 LKGGEQTVRRFLGGLSLF---T-LAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVG-LEDADDLIADLEQ 377 (382)
T ss_pred ecCcHHHHHHHHHcCCcc---e-EeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHH
Confidence 97 456678999999973 3 7999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHH
Q 013210 435 ALSR 438 (447)
Q Consensus 435 al~~ 438 (447)
||++
T Consensus 378 al~~ 381 (382)
T TIGR02080 378 GLRA 381 (382)
T ss_pred HHhh
Confidence 9974
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=440.12 Aligned_cols=364 Identities=43% Similarity=0.671 Sum_probs=330.2
Q ss_pred CccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc
Q 013210 56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC 135 (447)
Q Consensus 56 ~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~ 135 (447)
|++++||+.++||.+++.+++.+.+... ...+.|+|+.+|+.+++|+++|+++|.+.+++++||++|+..++.+++
T Consensus 1 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~ 76 (369)
T cd00614 1 GAVAPPIYQTSTFVFPSPAEAADLFALR----EGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALL 76 (369)
T ss_pred CCcCCCccCCCceecCCHHHHHHhhcCC----cCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHc
Confidence 4789999999999999998887776543 346899999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc
Q 013210 136 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 215 (447)
Q Consensus 136 ~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~ 215 (447)
++||+|+++.+.|+++...+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.|+++|+++|+++
T Consensus 77 ~~gd~Vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~ 154 (369)
T cd00614 77 KAGDHVVASDDLYGGTYRLFERLLPK-LGIEVTFVDPDDPEALEAAI-KPETKLVYVESPTNPTLKVVDIEAIAELAHEH 154 (369)
T ss_pred CCCCEEEECCCCcchHHHHHHHHHhh-cCeEEEEeCCCCHHHHHHhc-CCCCeEEEEECCCCCCCeecCHHHHHHHHHHc
Confidence 99999999999999998877655555 79999999999999999999 77899999999999999999999999999999
Q ss_pred CCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhhhhcCCCccHHHHHHHH
Q 013210 216 GVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELS 293 (447)
Q Consensus 216 gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~ 293 (447)
|+++|+|++| .+....+..+++|++++|+||+++++|+.+||++++++ ++++.++..+. ..|..+++..+++++
T Consensus 155 g~~livD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~----~~g~~~~p~~a~~~l 230 (369)
T cd00614 155 GALLVVDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRL----ALGTILSPFDAWLLL 230 (369)
T ss_pred CCEEEEECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHH----hhCCCCCHHHHHHHH
Confidence 9999999999 44455777889999999999999999877789999876 88888877665 467788899999999
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhh
Q 013210 294 ERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQ 370 (447)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~ 370 (447)
+.++++..|++++.+++.++.++|++++. +|.||+++++|+|++++++++ |.|++++|.++ +.+.+.+|++.|+
T Consensus 231 ~~l~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~---g~g~i~s~~l~~~~~~~~~f~~~l~ 307 (369)
T cd00614 231 RGLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMS---GYGGVFSFELKGGLEAAKKFLNALK 307 (369)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcC---CCceEEEEEeCCCHHHHHHHHHcCC
Confidence 99999999999999999999999999874 899999999999999999886 78999999997 6777899999999
Q ss_pred cccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 371 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 371 ~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
... +++|+|+++|++++|+..+|..++.+.+...|+++++||||+| .|+.+++|++|.+||+
T Consensus 308 ~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svG-lE~~~dl~~dl~~al~ 369 (369)
T cd00614 308 LFS----LAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVG-IEDVEDLIADLEQALK 369 (369)
T ss_pred cce----EcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHhhC
Confidence 733 6999999999999999999999999999999999999999999 9999999999999973
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=440.14 Aligned_cols=371 Identities=36% Similarity=0.578 Sum_probs=328.8
Q ss_pred chhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.+.++|+. .....+|+++||||.++||.+++.. . ...|.|+|..+|....+++.+|+++|++..+
T Consensus 2 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~----~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~ 69 (377)
T PRK07671 2 RAKTKLIHGGIIGDPSTGAVSVPIYQVSTYKQEAVG--------K----HQGYEYSRTGNPTRAALEELIAVLEGGHAGF 69 (377)
T ss_pred CcccceeeCCCCCCCCCCCccCCccCCcceecCCCC--------C----cCCCCcCCCCChHHHHHHHHHHHHhCCCceE
Confidence 3556677744 3344579999999999999887731 1 2358899999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
++++|+.|+..++ .++++||+|+++.+.|++.+..+...+.+ .|+++++++..|++++++++ +++|++|++++|+||
T Consensus 70 ~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~ai-~~~tklV~le~P~NP 146 (377)
T PRK07671 70 AFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNR-FGIEHTFVDTSNLEEVEEAI-RPNTKAIYVETPTNP 146 (377)
T ss_pred EeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCC
Confidence 9999999988765 57889999999999999887766555555 79999999988999999999 789999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGA 276 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~ 276 (447)
+|.+.|+++|.++|+++|+++|+|++| .+....+..+++|++++|++|+++++++.+||+++. +++++++++..+.
T Consensus 147 tg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~-- 224 (377)
T PRK07671 147 LLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQN-- 224 (377)
T ss_pred CCcccCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHH--
Confidence 999999999999999999999999999 445556777899999999999999998777787765 5678888887776
Q ss_pred hhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013210 277 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 354 (447)
Q Consensus 277 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 354 (447)
..|..+++..++.++++++++..|++++++++..+.++|++++. .|+||+++++|+|+++++++. |+|++++|
T Consensus 225 --~~g~~~~~~~a~l~~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~~s~ 299 (377)
T PRK07671 225 --STGGILGPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQAN---GFGGMISF 299 (377)
T ss_pred --hhcCCCCHHHHHHHHcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCceEEE
Confidence 56888999999999999999999999999999999999999876 899999999999999999885 78999999
Q ss_pred EeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 355 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 355 ~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
++.+.+.+.+|+++|+... +++|+|+.+|++++|+.++|..++.+.+..+|+++++||||+| .||.+++|++|.+
T Consensus 300 ~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~ 374 (377)
T PRK07671 300 DVGSEETANKVLERLQYFT----LAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVG-IEDGEDLIEDLAQ 374 (377)
T ss_pred EeCCHHHHHHHHHhCCcce----EccCCCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHH
Confidence 9987777899999999733 7999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHH
Q 013210 435 ALS 437 (447)
Q Consensus 435 al~ 437 (447)
||+
T Consensus 375 al~ 377 (377)
T PRK07671 375 ALA 377 (377)
T ss_pred HhC
Confidence 984
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=445.69 Aligned_cols=384 Identities=33% Similarity=0.515 Sum_probs=328.4
Q ss_pred hhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 41 PAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 41 ~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
+.+.++|+. .....+|++.|||+.++||.+++.+++.+.+... ...+.|+|..+|+.++++++||+++|.+.+++
T Consensus 2 ~~t~~~~~~~~~~~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~----~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~ 77 (418)
T TIGR01326 2 FETLQLHAGQEPDPTTGSRAVPIYQTTSYVFDSTEHAAALFGLQ----EAGNIYSRLMNPTTDVLEQRIAALEGGVAALA 77 (418)
T ss_pred ccceeEECCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhccC----cCCceeECCCChhHHHHHHHHHHHhCCCeEEE
Confidence 345566654 3344468999999999999999987666554322 23478999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
|+||++|+..++.+++++||+|+++.+.|+++...+...+.. .|+++++++.+|++++++++ ++++++|++++|+||+
T Consensus 78 ~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~l-~~~t~~V~le~p~NPt 155 (418)
T TIGR01326 78 VASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKR-LGIEVRFVDPDDPEEFEKAI-DENTKAVFAETIGNPA 155 (418)
T ss_pred EccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCC
Confidence 999999999999999999999999999999887776555555 79999999988999999999 7789999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-----------
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN----------- 267 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~----------- 267 (447)
|.+.|+++|.++|+++|+++|+|++| .+....+...++|+++.|+||+++++|+++||+++.++.+..
T Consensus 156 g~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~ 235 (418)
T TIGR01326 156 INVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTP 235 (418)
T ss_pred CeecCHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEecccccccccccccccCC
Confidence 99999999999999999999999999 455556777799999999999999999999776664432110
Q ss_pred -----------------HHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCC
Q 013210 268 -----------------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPG 328 (447)
Q Consensus 268 -----------------~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~ 328 (447)
.+.+.+.......|..+++..++.++++++++..|++++.+++..++++|.+++. .|+||+
T Consensus 236 ~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~ 315 (418)
T TIGR01326 236 DPSYHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPG 315 (418)
T ss_pred CCccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence 0001111122255778889999999999999999999999999999999999875 899999
Q ss_pred CCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHh
Q 013210 329 LEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 407 (447)
Q Consensus 329 ~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~ 407 (447)
++++|+|+++++++.. |+|++++|+++ +.+.+.+|++.|+... +++|+|+++|++++|+.++|..++.+.+..
T Consensus 316 l~~~~~~~~~~~~~~~--g~g~~~s~~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~~~~~~h~~~~~~~~~~ 389 (418)
T TIGR01326 316 LASHPHHALAKKYLPK--GFGAVLSFEIKGGREAGKKFIDALKLAS----HLANVGDAKSLVIHPASTTHQQLSEEEQLK 389 (418)
T ss_pred CCCCccHHHHHHhccC--CCcceEEEEecCCHHHHHHHHHhCCcce----eccccCCCCceeeCCCCCCcccCCHHHHHh
Confidence 9999999999999843 68999999996 5566789999999743 689999999999999999999999999999
Q ss_pred cCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 408 AGISAGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 408 ~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
+|+++++||||+| .|+.+++|++|.+||+
T Consensus 390 ~gi~~~liR~svG-lE~~~dl~~dl~~Al~ 418 (418)
T TIGR01326 390 AGVTPGLIRLSVG-IENIDDIIADLEQALE 418 (418)
T ss_pred cCCCCCeEEEEec-CCCHHHHHHHHHHhhC
Confidence 9999999999999 9999999999999984
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=442.38 Aligned_cols=385 Identities=31% Similarity=0.458 Sum_probs=333.4
Q ss_pred hhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 41 PAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 41 ~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
+.+.++|.. .....+|++++||+.++||.+++.+++.+.+... ...+.|+|..+|+...++++||+++|.+.+++
T Consensus 8 ~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~ 83 (427)
T PRK05994 8 FATLAVHAGAQPDPTTGARATPIYQTTSFVFNDADHAASLFGLQ----AFGNIYTRITNPTNAVLEERVAALEGGTAALA 83 (427)
T ss_pred cchhheECCcCCCCCCCCccCCCcCCCCcccCCHHHHHHhhccc----cCCcceECCCCccHHHHHHHHHHHhCCCcEEE
Confidence 556666643 3344468999999999999999987776655432 22478999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
++||++|+.+++.+++++||+||++.+.|+++...+...+.+ .|+++++++.+|++++++++ +++|++|++++|+||+
T Consensus 84 ~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~ai-~~~tklV~vesp~Npt 161 (427)
T PRK05994 84 VASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKS-FGWQVRWADADDPASFERAI-TPRTKAIFIESIANPG 161 (427)
T ss_pred EcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCC
Confidence 999999999999999999999999999999987776555555 79999999999999999999 7889999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChH--------------
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN-------------- 264 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~-------------- 264 (447)
|.+.|+++|.++|+++|+++|+|++| .++...+..+|+|+++.|+||++|++|+.+||+++....
T Consensus 162 G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~ 241 (427)
T PRK05994 162 GTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSE 241 (427)
T ss_pred CeecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccC
Confidence 99999999999999999999999999 667778888999999999999999999999888874211
Q ss_pred ---------HHHHHH---H---HhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCC
Q 013210 265 ---------LVNSMM---D---LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYP 327 (447)
Q Consensus 265 ---------~~~~l~---~---~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p 327 (447)
+.+.+. . .+.......|..+++..|++++++++++..|++++++++..+.++|++++. +|.||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP 321 (427)
T PRK05994 242 PRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYA 321 (427)
T ss_pred CcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 111111 0 000012256888999999999999999999999999999999999999986 89999
Q ss_pred CCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHH
Q 013210 328 GLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 406 (447)
Q Consensus 328 ~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~ 406 (447)
+++++|+|+++++++.. |+|++++|+++ +.+.+.+|++.|+.. . +++|+|+++|++++|+.++|..++.+.+.
T Consensus 322 ~l~~~~~~~~~~~~~~~--g~g~~~sf~l~~~~~~~~~~~~~l~l~---~-~~~s~G~~~sl~~~p~~~~h~~~~~~~~~ 395 (427)
T PRK05994 322 GLPDDPYHALAQKYSPK--GAGAVFTFGLKGGYEAGVKLVSSLKLF---S-HLANIGDTRSLVIHPASTTHRQLTDEQKV 395 (427)
T ss_pred CCCCCccHHHHHHhcCC--CceEEEEEEecCCHHHHHHHHHhCCcc---e-eccccCCCcceeeCCCCCCcccCCHHHHH
Confidence 99999999999998643 68999999997 556788999999973 3 79999999999999999999999999999
Q ss_pred hcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 407 LAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 407 ~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
..|+++++||||+| .|+.+++|++|.+||++
T Consensus 396 ~~gi~~~liRlsvG-lE~~~dli~dl~~Al~~ 426 (427)
T PRK05994 396 AAGAGPDVVRLSIG-IEDVDDIIADLEQALAK 426 (427)
T ss_pred hcCCCCCcEEEEec-cCCHHHHHHHHHHHHhh
Confidence 99999999999999 99999999999999975
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-56 Score=440.53 Aligned_cols=374 Identities=32% Similarity=0.471 Sum_probs=329.4
Q ss_pred hhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 41 PAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 41 ~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
+.+.++|+. .....+|++.|||+.++||.+++.. . ...|.|+|+.+|..+.++++||+++|++..++
T Consensus 13 ~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~-----------~-~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~ 80 (405)
T PRK08776 13 AATAAVRAGIDRDTAYGAVTPPIVLSSNFSFDGFG-----------N-KRQYDYTRSGNPTRDLLGEALAELEGGAGGVI 80 (405)
T ss_pred ccchheeCCCCCCCCCCCccCCEeccceEEeCCCC-----------c-ccCCcccCCCChHHHHHHHHHHHHhCCCceEE
Confidence 456667744 3344579999999999999887631 0 12578999999999999999999999988999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
++||++|+.+++.+++++||+|+++.+.|+++...+...... .|+++..++..|+++|++++ +++|++|++++|+||+
T Consensus 81 ~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~-~g~~v~~v~~~d~~~l~~~i-~~~tklV~l~~P~NPt 158 (405)
T PRK08776 81 TATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKK-GHFALITADLTDPRSLADAL-AQSPKLVLIETPSNPL 158 (405)
T ss_pred EcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCCCC
Confidence 999999999999999999999999999999877766555444 68899999888999999999 7789999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL 277 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~ 277 (447)
|.+.|+++|.++|+++|+++|+|++| .+....+..+|+|++++|+||+++++|+.+||+++. ++++.+++...+.
T Consensus 159 G~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~--- 235 (405)
T PRK08776 159 LRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWAN--- 235 (405)
T ss_pred CccCCHHHHHHHHHHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHH---
Confidence 99999999999999999999999999 455567777899999999999999998777788866 5777777765554
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..|..+++..+++..++++++..|++++.+++..+.++|++++. +|.||+++++|+|++++++++ |+|++++|+
T Consensus 236 -~~g~~~s~~~a~l~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~s~~ 311 (405)
T PRK08776 236 -ALGLTGSPFDAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQK---GFGAMLSFE 311 (405)
T ss_pred -hcCCCCCHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCC---CCceEEEEE
Confidence 45666788999999999999999999999999999999999986 899999999999999999885 789999999
Q ss_pred eC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 356 ME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 356 l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
++ +.+.+.+|++.|+... +++|+|+.+|++++|+.++|..++.++++.+|+++++||||+| .|+.+++|++|.+
T Consensus 312 ~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~dl~~ 386 (405)
T PRK08776 312 LEGGEAAVRAFVDGLRYFT----LAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVG-IESAEDLLIDLRA 386 (405)
T ss_pred EcCCHHHHHHHHHhCCcce----EccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHH
Confidence 97 4566789999999733 7999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHhh
Q 013210 435 ALSRMQ 440 (447)
Q Consensus 435 al~~~~ 440 (447)
||+++.
T Consensus 387 al~~~~ 392 (405)
T PRK08776 387 GLARAE 392 (405)
T ss_pred HHHHhH
Confidence 999874
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-56 Score=437.46 Aligned_cols=370 Identities=30% Similarity=0.518 Sum_probs=322.1
Q ss_pred chhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 40 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
.+.+.++|... ...+|++.+||+.++||.+++. ..|.|+|..+|..+++++++|+++|++..++
T Consensus 2 ~~~t~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~---------------~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~ 65 (376)
T PRK06460 2 KDATRTVREDI-DEATGAITTPIYQTTAYHYPEG---------------EKYRYSREANPTVLELTKKIVELENAEMGVA 65 (376)
T ss_pred CcceeeeecCC-CCCCCCccCCccCCcceeeCCC---------------CCcceeCCCCccHHHHHHHHHHHhCCCcEEE
Confidence 35566666432 2456899999999999998762 2588999999999999999999999988888
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
++||++|+..++.+++++||+|+++.+.|++++..+...+.. .|+++..++.++.+.+++.+ ++++++|++++|+||+
T Consensus 66 ~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~-~G~~v~~~~~~~~~~l~~~~-~~~tklV~l~sp~NPt 143 (376)
T PRK06460 66 FSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKN-WGVNVDASNPGSDNIIEKAK-SKRYDVVFVENITNPL 143 (376)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHh-hCcEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCC
Confidence 899999999999999999999999998887766665444444 78999998887766676655 6789999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 278 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~ 278 (447)
|.+.|+++|.++|+++|+++|+|++| .++...+...++|+++.|+||+++++++.++|++++++++++.++..+.
T Consensus 144 G~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~---- 219 (376)
T PRK06460 144 LRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRR---- 219 (376)
T ss_pred CcccCHHHHHHHHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHH----
Confidence 99999999999999999999999999 4444455566899999999999998765456999999999988887666
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 356 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l 356 (447)
..+..+++..++.++++++++..+++++.++++++.++|++++. +|+||+++++|+|++++++++ |+|++++|++
T Consensus 220 ~~g~~~~~~~a~~~l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---g~gg~~s~~~ 296 (376)
T PRK06460 220 TLGTSLDPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLK---GFGGVLSFEV 296 (376)
T ss_pred hcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCC---CCceEEEEEE
Confidence 45666777888888889999999999999999999999999875 899999999999999999986 7899999999
Q ss_pred C-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013210 357 E-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 357 ~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
+ +.+.+.+|++.|+... +++|+|+++|++++|+.++|..++.+.+.++|+++++||||+| .||.+++|++|++|
T Consensus 297 ~~~~~~~~~~~~~l~~~~----~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~a 371 (376)
T PRK06460 297 NGGQESALKVMKSLKLII----PAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVG-IEDVNDLIEDLDRA 371 (376)
T ss_pred cCcHHHHHHHHHhCCcce----eccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHH
Confidence 7 4567889999998733 7999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHh
Q 013210 436 LSRM 439 (447)
Q Consensus 436 l~~~ 439 (447)
|+++
T Consensus 372 l~~~ 375 (376)
T PRK06460 372 LSTL 375 (376)
T ss_pred HHhh
Confidence 9864
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=434.83 Aligned_cols=365 Identities=25% Similarity=0.437 Sum_probs=317.4
Q ss_pred cCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHH
Q 013210 48 ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAI 127 (447)
Q Consensus 48 ~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~ 127 (447)
|+.....+|+++||||+++||.+++.+++. + ....|.|+|.++|+...||++||+++|++.+++|+||++|+
T Consensus 7 ~~~~~~~~~~~~~pi~~~st~~~~~~~~~~--~------~~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai 78 (377)
T TIGR01324 7 GRQPRFSQGSVNPPLQRASTVLFDSHAAQR--R------AKGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPSGLAAV 78 (377)
T ss_pred CCCCCCCCCCccCCeeCCCceeeCChhhhc--C------CcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECcHHHHH
Confidence 433334568999999999999999864331 1 13468999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHH
Q 013210 128 SSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 207 (447)
Q Consensus 128 ~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~ 207 (447)
..++.+++++||+|+++++.|+++...+.....+ .|+++.+++..+.+++++++ +++|++|++++|+||+|.+.|+++
T Consensus 79 ~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~-~gi~v~~~d~~~~e~l~~~i-~~~tklV~lesp~Np~g~~~dl~~ 156 (377)
T TIGR01324 79 TNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKR-MGVDITYYDPLIGEDIATLI-QPNTKVLFLEAPSSITFEIQDIPA 156 (377)
T ss_pred HHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCcHHHHHH
Confidence 9999999999999999999999887766444444 78999998876668899999 789999999999999999999999
Q ss_pred HHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccH
Q 013210 208 LSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP 286 (447)
Q Consensus 208 I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~ 286 (447)
|+++|+++|+++++|++| .+..+.+.++|+|++++|++|+++++++.+||+++.+++.++.++.... ..|..+++
T Consensus 157 I~~la~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~----~~G~~l~p 232 (377)
T TIGR01324 157 IAKAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSY----LMGQMVDA 232 (377)
T ss_pred HHHHHHHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHH----HhCCCCCH
Confidence 999999999999999999 6677788999999999999999999998888999998888777765443 67999999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--CHHHH
Q 013210 287 KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--TEEKA 362 (447)
Q Consensus 287 ~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--~~~~~ 362 (447)
..++..+++++++..|++++++++..++++|++++. +|+||+++++|+|++++++++ |+|++++|.++ +.+.+
T Consensus 233 ~~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---~~g~~~s~~l~~~~~~~~ 309 (377)
T TIGR01324 233 DDAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFS---GSSGLFSFVLQRLTQKQV 309 (377)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhcc---CCCceEEEEECCCCHHHH
Confidence 999999999999999999999999999999999976 899999999999999999886 78999999997 45678
Q ss_pred HHHHHHhhcccccccccccccCccccccccc-cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSG-SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 363 ~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a-~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+|++.|+. |+ +++|+|+.+|+++++. .++|. .+...|+.+++||||+| .|+.+++|++|.+||+++
T Consensus 310 ~~~~~~l~~---~~-~~~slG~~~sl~~~~~~~~~~~-----~~~~~~~~~~liR~svG-lE~~~dl~~dl~~al~~~ 377 (377)
T TIGR01324 310 HAFLDHLQL---FG-LGYSWGGYESLALCNQPELGHR-----PNIKRNLEGPLIRVHIG-LENVDDLKADLKAGFEAI 377 (377)
T ss_pred HHHHHhCCc---ce-EeccCCCccceeecCCCCCCHH-----HHHhccCCCCEEEEEeC-CCCHHHHHHHHHHHHhcC
Confidence 899999997 34 7999999999987433 33332 23456788899999999 999999999999999864
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-55 Score=435.17 Aligned_cols=369 Identities=30% Similarity=0.465 Sum_probs=325.3
Q ss_pred HhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCCh
Q 013210 44 ALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASG 123 (447)
Q Consensus 44 ~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsgg 123 (447)
.++|.......+++++|||+.++||.+++.+. ...|.|+|.++|.++.+++.+|+++|++.+++++||
T Consensus 4 ~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~------------~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~sG 71 (378)
T TIGR01329 4 LLVNTDNKNDPYDASSMPIYQTATFKQPLAIE------------NGPYDYTRSGNPTRTALESLLAKLDKADRAFAFSSG 71 (378)
T ss_pred eeEeCCCCCCCCCCcCCCeecCcceecCCccc------------cCCCccCCCCChHHHHHHHHHHHHhCCCcEEEECCH
Confidence 34453322234689999999999998876321 235889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc
Q 013210 124 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 203 (447)
Q Consensus 124 t~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~ 203 (447)
+.|+++++. ++++||+|+++.+.|+++...+.....+ .|+++++++..|++++++++ +++|++|++++|+||+|.+.
T Consensus 72 ~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~~~le~~i-~~~tklv~le~psnptg~v~ 148 (378)
T TIGR01329 72 MAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPR-SGVVVVHVDTTDLDKVKAAL-GPKTKLVLLESPTNPLQKIV 148 (378)
T ss_pred HHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHH-cCcEEEEeCCCCHHHHHHhc-CcCceEEEEECCCCCCCeee
Confidence 999998775 7899999999999999988777555555 79999999999999999999 78999999999999999999
Q ss_pred CHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcC
Q 013210 204 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLG 281 (447)
Q Consensus 204 ~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g 281 (447)
|+++|+++|+++|+++|+|++| .+....+..+|+|++++|+||+++++++.+||+++. ++++.++++..+. ..|
T Consensus 149 dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~----~~G 224 (378)
T TIGR01329 149 DIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQN----STG 224 (378)
T ss_pred cHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHH----hcC
Confidence 9999999999999999999999 666667778899999999999999887766799876 5566677776655 467
Q ss_pred CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013210 282 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 359 (447)
Q Consensus 282 ~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~ 359 (447)
..+++..++++.+.++++..|+++..+++..++++|++++. ++.||+++++|+|++++++++ |+|++++|.+.+.
T Consensus 225 ~~~~~~~a~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~---g~~~~~sf~~~~~ 301 (378)
T TIGR01329 225 SGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAK---GAGSVLSFETGSV 301 (378)
T ss_pred CcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CcceEEEEEECCH
Confidence 78888899999999999999999999999999999999876 899999999999999999874 6899999999776
Q ss_pred HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 360 ~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.+.+|++.|+. |+ +++|+|+++|++++|++++|..++++.++.+|+++++||||+| .|+.+++|++|++||+++
T Consensus 302 ~~~~~~~~~L~~---~~-i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 302 ALSKRLVEATKL---FS-ITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVG-IEDVDDLISDLDIAFVTA 376 (378)
T ss_pred HHHHHHHHhCcC---cc-cccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhc
Confidence 668899999986 44 7999999999999999999999999999999999999999999 999999999999999865
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-55 Score=435.29 Aligned_cols=373 Identities=35% Similarity=0.501 Sum_probs=325.7
Q ss_pred CCchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe
Q 013210 38 WEDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA 116 (447)
Q Consensus 38 ~~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~ 116 (447)
++++.+.++|.. .....+|++++||+.++||.+++.+.. .+.|.|+|+.++...++|++||+++|.+.
T Consensus 10 ~~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~-----------~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~ 78 (388)
T PRK07811 10 NQGFATRAIHAGYEPDPATGAVNPPIYASSTFAQDGVGGL-----------RGGYEYARTGNPTRTALEEQLAALEGGAY 78 (388)
T ss_pred CCCcccceeeCCCCCCCCCCCccCCccCCcceecCCcccc-----------cCCCcccCCCCccHHHHHHHHHHHhCCCc
Confidence 345667777744 344557999999999999988774321 23578999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 117 AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 117 ~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
.++++||++|+.+++.+++++||+|+++.+.|++++..+.....+ .|+++.+++..|+++|++++ +++|++|++++|+
T Consensus 79 ~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~gi~~~~~d~~d~e~l~~~i-~~~tklV~ie~p~ 156 (388)
T PRK07811 79 GRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTR-WGVEYTPVDLSDLDAVRAAI-TPRTKLIWVETPT 156 (388)
T ss_pred eEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcC-CCeEEEEeCCCCHHHHHHhc-CcCCeEEEEECCC
Confidence 888999999999999999999999999999999888777555555 79999999988999999999 7799999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhh
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQ 274 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~ 274 (447)
||+|.+.|+++|.++|+++|+++|+|++| .+....+..+++|++++|++|+++++|.++||+++. ++++.+.+...+.
T Consensus 157 NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~ 236 (388)
T PRK07811 157 NPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQN 236 (388)
T ss_pred CCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 444456777899999999999999988877798876 5677777765554
Q ss_pred hhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 275 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
..|...++..+++.++.++++..|+++..+++..+.++|++++. +|+||+++++|+|+++++++. |+|+++
T Consensus 237 ----~~g~~~s~~~a~l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~ 309 (388)
T PRK07811 237 ----GAGAVPGPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMR---GFGGMV 309 (388)
T ss_pred ----hcCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcC---CCCceE
Confidence 45777788888999999999999999999999999999999976 899999999999999999985 789999
Q ss_pred EEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 353 CLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 353 ~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
+|+++ +.+.+.+|++.|+... +++|+|+++|++++|+.++|..++.+ ..|+++++||||+| .|+.+++|++
T Consensus 310 s~~~~~~~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~---~~gi~~~liR~svG-lE~~~dl~~d 381 (388)
T PRK07811 310 SVRLAGGEEAARDFCARTKVFT----LAESLGGVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVG-IEDVADLLAD 381 (388)
T ss_pred EEEeCCCHHHHHHHHHhCCcce----eeccCCCCcceEeCCcccCcccCCHh---hcCCCCCEEEEEeC-CCCHHHHHHH
Confidence 99997 5667889999999733 79999999999999999999988855 35999999999999 9999999999
Q ss_pred HHHHHHH
Q 013210 432 FEKALSR 438 (447)
Q Consensus 432 l~~al~~ 438 (447)
|.+||++
T Consensus 382 l~~al~~ 388 (388)
T PRK07811 382 LEQALGQ 388 (388)
T ss_pred HHHHhhC
Confidence 9999963
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-55 Score=432.77 Aligned_cols=376 Identities=33% Similarity=0.509 Sum_probs=331.9
Q ss_pred CchhhHhhh-cCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
+++.+.++| |+.....+|++++||+.++||.+++.+. ...|.|+|..+|..+.+++++|+++|++..
T Consensus 5 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~------------~~~~~y~r~~~p~~~~le~~lA~l~g~~~~ 72 (390)
T PRK08064 5 YSIDTLLLHNQYKHDKQTGAVNVPIYHASTFHQFDFDT------------FGKYDYSRSGNPTREALEDIIAELEGGTKG 72 (390)
T ss_pred CCcccceeeCCCCCCCCCCCccCCcccCcceecCcccc------------cCCCcccCCCChhHHHHHHHHHHHhCCCCe
Confidence 456666677 4333445799999999999998887532 124789999999999999999999999888
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
+++++|+.|+.+++. ++++||+|+++.+.|++++..+...+.+ .|+++.+++.+|++++++++ +++|++|++++|+|
T Consensus 73 v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~l-~~~tklV~l~~p~N 149 (390)
T PRK08064 73 FAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSR-FGIEHTFVDMTNLEEVAQNI-KPNTKLFYVETPSN 149 (390)
T ss_pred EEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCceEEEEECCCC
Confidence 999999999998886 7789999999999999888777555555 79999999999999999999 78899999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhh
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQG 275 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~ 275 (447)
|+|.+.|+++|.++|+++|+++++|++| .+....+.++|+|+++.|+||+++++++.++|+++. ++++++.++..+.
T Consensus 150 ptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~- 228 (390)
T PRK08064 150 PLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQN- 228 (390)
T ss_pred CCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHH-
Confidence 9999999999999999999999999999 444455667899999999999999888766798765 5678888887776
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|...++..++..+++++++..|++++.+++..+.++|++++. +++||+++++|++++++++++ |+|++++
T Consensus 229 ---~~g~~~~~~~a~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~---g~gg~~s 302 (390)
T PRK08064 229 ---SFGAVLGVQDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQAT---SAGAVLS 302 (390)
T ss_pred ---hcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCC---CcceEEE
Confidence 57888888899999999999999999999999999999999875 899999999999999999876 7899999
Q ss_pred EEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 354 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
|++++.+++.+|++.++... +++|+|+.+|++++|+.++|..++.+.+..+|+++++||+|+| .|+++++|++|.
T Consensus 303 f~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvG-le~~~dli~dl~ 377 (390)
T PRK08064 303 FTLQSEEAVRQFVSHVKLPV----FAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVG-LENVDDLIADFE 377 (390)
T ss_pred EEECCHHHHHHHHHhCCcce----EcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHH
Confidence 99998778889999998632 6999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHhhh
Q 013210 434 KALSRMQD 441 (447)
Q Consensus 434 ~al~~~~~ 441 (447)
+||+++++
T Consensus 378 ~Al~~~~~ 385 (390)
T PRK08064 378 QALSYVEE 385 (390)
T ss_pred HHHHhccc
Confidence 99998753
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=428.59 Aligned_cols=377 Identities=24% Similarity=0.327 Sum_probs=326.8
Q ss_pred CchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
.++.+.++|+. .....+|++++|||.++||.+++.+++...+.+. ...|.|+|+++|+++++++.+|+++|++.+
T Consensus 8 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~----~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~ 83 (394)
T PRK07050 8 RALQTRIVQPDDQIPPGFRSFVTPVARASTVVFPDLATMRALDWRQ----DVQWRYGLHATPTSLALAQRLAEIEGGRHA 83 (394)
T ss_pred CCccchheECCCCCCCCCCCccCCeeCCcceecCCHHHHHhhcccc----cCCcccCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 35667777754 3345579999999999999999988777666432 236889999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
++|+||++|+.+++.+++++||+|+++.+.|+++...+...... .|+++++++..+.+++++++ +++|++|++++|+|
T Consensus 84 l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~-~Gi~v~~vd~~~~~~l~~~i-~~~tklV~le~p~N 161 (394)
T PRK07050 84 LLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARD-FGITVRFYDPLIGAGIADLI-QPNTRLIWLEAPGS 161 (394)
T ss_pred EEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHh-cCeEEEEECCCCHHHHHHhc-CCCCeEEEEECCCC
Confidence 99999999999999999999999999999999988766444444 79999999887888999999 78999999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhh
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQG 275 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~ 275 (447)
|+|.+.|+++|+++|+++|+++|+|++| .+..+++..+|+|+++.|++|+++++++.+||+++. +++++++++..+.
T Consensus 162 p~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~- 240 (394)
T PRK07050 162 VTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARM- 240 (394)
T ss_pred CCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHH-
Confidence 9999999999999999999999999999 666788888999999999999999888776787654 7788888887766
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|..+++..++.++++++++..|++++.+++.+++++|++++. ++++|+++++|++.++++++. ++|++++
T Consensus 241 ---~~G~~~~~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---~~g~~~s 314 (394)
T PRK07050 241 ---RLGIGVSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFT---GAGGLFS 314 (394)
T ss_pred ---hcCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCceEEE
Confidence 56888899999999999999999999999999999999999875 899999999999999998875 6889999
Q ss_pred EEeCC---HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013210 354 LDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 430 (447)
Q Consensus 354 ~~l~~---~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~ 430 (447)
|.+.+ .+.+.+|++.|+.. + +++|+|+++|+++ |+..++.... ...+.+++||||+| .|+.+++|+
T Consensus 315 ~~l~~~~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~-~~~~~~~~~~-----~~~~~~~~iR~svG-lE~~~dl~~ 383 (394)
T PRK07050 315 VVFDERYSPAQVDAFVEALELF---A-IGWSWGGACSLAM-PYDVASMRTA-----KWPHRGTLVRLYIG-LEDEADLIA 383 (394)
T ss_pred EEECCCCCHHHHHHHHHcCCCC---e-eccccCCccceEe-eCcccccchh-----hcCCCCCEEEEEeC-cCCHHHHHH
Confidence 99973 46789999999974 3 7999999999997 6655544332 23366799999999 999999999
Q ss_pred HHHHHHHHh
Q 013210 431 QFEKALSRM 439 (447)
Q Consensus 431 ~l~~al~~~ 439 (447)
+|.+||++.
T Consensus 384 dl~~al~~~ 392 (394)
T PRK07050 384 DLEQALEAA 392 (394)
T ss_pred HHHHHHHHh
Confidence 999999865
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=424.55 Aligned_cols=372 Identities=31% Similarity=0.496 Sum_probs=323.5
Q ss_pred chhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.+.++|+. .....+|++++||+.++||.+++.+++....... ...|.|+|..+|+++++|+++|+++|++.++
T Consensus 8 ~~~t~~~~~~~~~~~~~~~~~~pI~~ss~~~~~~~~~~~~~~~~~----~~~~~Y~r~~~P~~~~lE~~la~leg~~~av 83 (384)
T PRK06434 8 GFNTRAVQSGELRDPRFGNVTTPIFETSTFVYPNSEKEAYMDSTR----GMPYIYTRWGNPTVQAFEEKYAVLENAEHAL 83 (384)
T ss_pred CcccceeECCCCCCCCCCCccCCeeCCcceecCChHHhhhccccc----cCCcceeCCCChhHHHHHHHHHHHhCCCcEE
Confidence 3566777754 3344579999999999999999886654222111 2358999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
.++|||.|+.+++.+++++||+|+++...|+++...+...+.+ .|++++++|.++.+.++ +..+++++|++++|+||
T Consensus 84 ~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~-~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snp 160 (384)
T PRK06434 84 SFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKT-LGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNP 160 (384)
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHh-cCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCC
Confidence 9999999999999999999999999999999988877666665 79999999987766665 52347999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGA 276 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~ 276 (447)
++.+.|+++|+++|++++ +++|+++ +++...|..+|+|++++|.+|+++++|+.+||+++. ++++.++++..+.
T Consensus 161 t~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~-- 236 (384)
T PRK06434 161 TLKVPDIKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK-- 236 (384)
T ss_pred CceeecHHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHH--
Confidence 999999999999999998 4679999 667778888999999999999999999878898866 5667777765554
Q ss_pred hhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013210 277 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 354 (447)
Q Consensus 277 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 354 (447)
..|..+++..|++.+++++++..|++++++++..+.++|++++. +|+||+++ +++++++ |+|++++|
T Consensus 237 --~~G~~~~~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~---g~g~~~sf 305 (384)
T PRK06434 237 --TLGSNPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLR---GFGGMLSF 305 (384)
T ss_pred --hcCCCCCHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcC---CCCceEEE
Confidence 56888889999999999999999999999999999999999986 89999974 7888875 78999999
Q ss_pred EeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 355 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 355 ~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
++++.+.+.+|++.|+... +++|+|+++|++++|++++|..++++.+..+|+++++||||+| .|+++++|++|.+
T Consensus 306 ~l~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvG-lEd~~dLi~dl~~ 380 (384)
T PRK06434 306 ELRSMEDVHKFIRNLEIPM----VAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIG-IEDIDDLIKDIEN 380 (384)
T ss_pred EECCHHHHHHHHHhCCcce----EccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeC-cCCHHHHHHHHHH
Confidence 9987777899999999733 6999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHH
Q 013210 435 ALSR 438 (447)
Q Consensus 435 al~~ 438 (447)
||++
T Consensus 381 Al~~ 384 (384)
T PRK06434 381 ALSK 384 (384)
T ss_pred HhcC
Confidence 9963
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-53 Score=417.69 Aligned_cols=375 Identities=32% Similarity=0.472 Sum_probs=328.8
Q ss_pred hhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeC
Q 013210 42 AAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTA 121 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ts 121 (447)
...|+|+++....+++++||||.++||.+++.+++.+.+.+. ...+.|+|..+|+++++|+.+|+++|++..++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~ 85 (389)
T PRK05968 10 LAALITAHDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGE----KVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFA 85 (389)
T ss_pred hhheeecCCCccCCCCccCCccCCcceecCCHHHHHHhhcCC----CCCccccCCCChhHHHHHHHHHHHhCCCcEEEEC
Confidence 467888888888899999999999999999998888887643 2458899999999999999999999999989999
Q ss_pred ChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcc
Q 013210 122 SGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLA 201 (447)
Q Consensus 122 ggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~ 201 (447)
||+.|+.+++.+++++||+|+++.+.|+++...+...+.. .|+++.+++.+|++++++++ ++|++|++++|+|+++.
T Consensus 86 sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i--~~tklV~ie~pt~~~~~ 162 (389)
T PRK05968 86 SGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKR-MGVEVDYVDGRDEEAVAKAL--PGAKLLYLESPTSWVFE 162 (389)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCceEEEeCCCCHHHHHHhc--ccCCEEEEECCCCCCCc
Confidence 9999999999989999999999999999988777555554 79999999999999999988 46899999999999999
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhc
Q 013210 202 VANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 280 (447)
Q Consensus 202 v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~ 280 (447)
+.|+++|+++|+++|+++|+|++| .+....+..+|+|++++|+||+++++|+.+||+++++++++++++..+.. ..
T Consensus 163 ~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~---~~ 239 (389)
T PRK05968 163 LQDVAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYP---YL 239 (389)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHH---hC
Confidence 999999999999999999999999 44445677789999999999999998876679999999988887764431 35
Q ss_pred CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 281 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 281 g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
|..+++..|+.++++++++..|++++.+++++++++|++++. .+.+|+++++|. +++ .|+|++++|.+++
T Consensus 240 g~~~~~~~A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~-----~~~---~g~g~~~sf~~~~ 311 (389)
T PRK05968 240 GAKLSPFEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPP-----AGL---SGTSGLFSFIFRE 311 (389)
T ss_pred CCCCChHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChH-----HhC---CCCceEEEEEECC
Confidence 667888999999999999999999999999999999999875 788999988884 222 2689999999986
Q ss_pred HHHHHHHHHHhhcccccccccccccCccccccccccccCCC-CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 359 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE-LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 359 ~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~-~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
...+.+|+++|+.. + +++|+|+.+|+++ |++++|.. .+.+.++..|+++++||+|+| .|+++++|++|.+||+
T Consensus 312 ~~~~~~f~~~L~~~---~-~~~s~G~~~slv~-p~~~~~~~~~~~~~~~~~gi~~~liR~SvG-lE~~~dl~~dl~~al~ 385 (389)
T PRK05968 312 GIDVRAFADALKLF---R-LGVSWGGHESLVV-PAEVVLQQKAQPNSAARFGVSPRSVRLHVG-LEGTEALWADLEQALA 385 (389)
T ss_pred HHHHHHHHHhCCcc---E-EecCCCCCCceee-eCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHH
Confidence 55688999999874 3 7999999999998 88888777 457778889999999999999 9999999999999998
Q ss_pred Hhh
Q 013210 438 RMQ 440 (447)
Q Consensus 438 ~~~ 440 (447)
+..
T Consensus 386 ~~~ 388 (389)
T PRK05968 386 AAS 388 (389)
T ss_pred Hhh
Confidence 764
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-53 Score=413.48 Aligned_cols=354 Identities=31% Similarity=0.465 Sum_probs=309.4
Q ss_pred CchhhHhhhcCC-CCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALASARH-EFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~~~~-~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
+++.+.++|+.. ....+++++||||.++||.+++.. . ...|.|+|+.+|++.++|++||+++|++.+
T Consensus 5 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~-----------~-~~~~~Y~R~~~p~~~~le~~lA~leg~~~~ 72 (364)
T PRK07269 5 LHINTILAQAGIKSDEATGALVTPLHFSTTYQHPEFG-----------Q-STGFDYTRTKNPTRAKLEETLAAIESADYA 72 (364)
T ss_pred CCcccceeeCCCCCCCCCCCccCCccCCcceecCCCC-----------C-cCCcceeCCCCccHHHHHHHHHHHhCCCeE
Confidence 356677777553 334468999999999999887631 1 235899999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
++++||++|+.+++. ++++||+||++.+.|++....+....+. .++.+.+. .|++++++++ +++|++|++++|+|
T Consensus 73 v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~-~~~~~~~~--~d~~~l~~~i-~~~TklV~lesP~N 147 (364)
T PRK07269 73 LATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKE-GRFHFTYA--NTEEELIAAI-EEDTDIVYIETPTN 147 (364)
T ss_pred EEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhc-CcEEEEec--CCHHHHHHhc-CcCceEEEEECCCC
Confidence 999999999999984 6789999999999999888766444443 35555553 4899999999 78999999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhh
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQG 275 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~ 275 (447)
|+|.+.|+++|+++|+++|+++++|++| .++...+...|+|++++|+||+++++|+.+||+++. +++++++++..+.
T Consensus 148 Ptg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~- 226 (364)
T PRK07269 148 PLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLN- 226 (364)
T ss_pred CCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHH-
Confidence 9999999999999999999999999998 666678888899999999999999999988899876 5677787775554
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|..+++..|++++++++++..|++++++++..++++|++++. ++.||+ .|++++
T Consensus 227 ---~~G~~~s~~~a~l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg-------------------~gg~~s 284 (364)
T PRK07269 227 ---TTGAVLSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG-------------------KGGMIS 284 (364)
T ss_pred ---HhCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC-------------------cCcEEE
Confidence 56788999999999999999999999999999999999999874 788885 688999
Q ss_pred EEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 354 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
|.+.+.+.+.+|++.++... +++|+|+.+|++++|+..+|..++.+.+..+|+++++||||+| .|+.+++|++|+
T Consensus 285 f~~~~~~~~~~f~~~l~~~~----~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvG-lE~~~dli~dl~ 359 (364)
T PRK07269 285 FKVADETRIPHILNSLKVFT----FAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIG-IEDARDLIADLK 359 (364)
T ss_pred EEECCHHHHHHHHHhCCcce----EccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHH
Confidence 99987777889999998633 7999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHH
Q 013210 434 KALS 437 (447)
Q Consensus 434 ~al~ 437 (447)
+||+
T Consensus 360 ~al~ 363 (364)
T PRK07269 360 QALE 363 (364)
T ss_pred HHhc
Confidence 9985
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=399.21 Aligned_cols=356 Identities=28% Similarity=0.486 Sum_probs=309.0
Q ss_pred hhhHhhh-cCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 41 PAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 41 ~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
+.+.++| |+.....+|+++||||.+|||.+++.. . ...|.|+|+.+|+.+.|++++|+++|++..++
T Consensus 5 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~-----------~-~~~~~y~r~~~pt~~~le~~la~l~g~~~~~~ 72 (366)
T PRK08247 5 IETKLAQIGNRSDERTGTVNPPVYFSTAYRHEGIG-----------E-STGFDYSRTGNPTRGVLEQAIADLEGGDQGFA 72 (366)
T ss_pred cchhheeCCCCCCCCCCCccCCcccCcccccCCCC-----------C-cCCccccCCCCchHHHHHHHHHHHhCCCcEEE
Confidence 4455666 433344579999999999999877621 1 23589999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
++||++|+.+++ .++++||+|+++.+.|+++...+...+.+ .|+++.+++..|++++++++ +++|++|++++|+||+
T Consensus 73 ~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklv~le~P~NP~ 149 (366)
T PRK08247 73 CSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKK-WNVRFVYVNTASLKAIEQAI-TPNTKAIFIETPTNPL 149 (366)
T ss_pred EcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhc-cCceEEEECCCCHHHHHHhc-ccCceEEEEECCCCCC
Confidence 999999999876 57889999999999999988777655555 79999999999999999999 7789999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGAL 277 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~ 277 (447)
|.+.++++|+++|+++|+++|+|++| .++...+...++|++++|+||+++++++.++|+++.+ +++.+.+...+.
T Consensus 150 ~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~--- 226 (366)
T PRK08247 150 MQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQN--- 226 (366)
T ss_pred CcHHHHHHHHHHHHHcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHH---
Confidence 99999999999999999999999999 6666677777999999999999999887777999886 677777776665
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..+..+++..+++++++++++..++++++++++.+.++|++++. .+.+|+ .|++++|.
T Consensus 227 -~~g~~~s~~~a~l~~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~-------------------~gg~~sf~ 286 (366)
T PRK08247 227 -AAGAVLSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG-------------------RGGMLSFR 286 (366)
T ss_pred -hcCCCCChHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC-------------------cCcEEEEE
Confidence 45666778888888899999999999999999999999999864 466764 57899999
Q ss_pred eCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013210 356 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 356 l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
+++.+.+.+|++.++... +++|+|+.++++.+|+..+|..++.+.+..+|+++++||||+| .|+.+++|++|++|
T Consensus 287 ~~~~~~~~~~~~~l~~~~----~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svG-lE~~~dl~~dl~~a 361 (366)
T PRK08247 287 LQDEEWVNPFLKSLKLIT----FAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVG-IENVEDLIADLKQA 361 (366)
T ss_pred ECCHHHHHHHHHcCCcce----EccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHH
Confidence 987666778999888633 7999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHh
Q 013210 436 LSRM 439 (447)
Q Consensus 436 l~~~ 439 (447)
|+++
T Consensus 362 l~~~ 365 (366)
T PRK08247 362 FKQV 365 (366)
T ss_pred Hhhc
Confidence 9863
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=399.42 Aligned_cols=357 Identities=28% Similarity=0.365 Sum_probs=302.8
Q ss_pred hhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEe
Q 013210 42 AAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120 (447)
Q Consensus 42 ~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~t 120 (447)
.++++|+. .....++++++|||.++||.+++.+ . ...+.|+|+.+|...+++++||+++ .+.++++
T Consensus 5 ~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~----~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~ 71 (366)
T PRK07582 5 GTRSVHAGGPEAVPGEPVLPGPVFAAPYHLSPGE--------P----TGPDTYGRASNPTWRALEAALGELE-GAEALVF 71 (366)
T ss_pred ccceeeCCCCCCCCCCCccCCccccceEEccCcc--------c----cCCceeECCCCccHHHHHHHHHHHc-CCCEEEE
Confidence 35556643 3344468999999999999988531 1 2347899999999999999999999 6778899
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCc
Q 013210 121 ASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTL 200 (447)
Q Consensus 121 sggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG 200 (447)
+||++|+.+++.+++++||+|+++.+.|+++...+...+.+ .|+++++++.++... .+ .+++++|++++|+||+|
T Consensus 72 ~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~-~G~~v~~v~~~~~~~---~~-~~~t~lV~le~p~NPtg 146 (366)
T PRK07582 72 PSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAP-LGVTVREAPTAGMAE---AA-LAGADLVLAETPSNPGL 146 (366)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhc-CeEEEEEECCCChHH---Hh-ccCceEEEEECCCCCCC
Confidence 99999999999999999999999999999888776545555 799999998765432 33 46899999999999999
Q ss_pred cccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh
Q 013210 201 AVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM 278 (447)
Q Consensus 201 ~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~ 278 (447)
.+.|+++|+++|+++|+++++|++| .+....+.++++|++++|+||+++++++..+||++. ++++++.++..+.
T Consensus 147 ~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~---- 222 (366)
T PRK07582 147 DVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRL---- 222 (366)
T ss_pred CccCHHHHHHHHHHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHH----
Confidence 9999999999999999999999998 455567777899999999999998766545698886 5788888887766
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 356 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l 356 (447)
..|..+++..++.++++++++..|++++.+++..++++|++++. +|.||+++++|+|++++++++ |+|++++|++
T Consensus 223 ~~g~~~~~~~a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---~~gg~~s~~~ 299 (366)
T PRK07582 223 LAGAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMR---RFGGLVSFEL 299 (366)
T ss_pred HhCCCCCHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCC---CCcceEEEEe
Confidence 56778889999999999999999999999999999999999976 899999999999999999986 6899999999
Q ss_pred CCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 357 ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 357 ~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
++.+.+.+|+++++... +++|+|+++|++.++... ..++++++||+|+| .|+++++|++|.+||
T Consensus 300 ~~~~~~~~~~~~l~~~~----~~~s~G~~~sl~~~~~~~-----------~~~~~~~liR~svG-lE~~~dli~dl~~al 363 (366)
T PRK07582 300 ADAAAAERFVAASRLVV----AATSFGGVHTSADRRARW-----------GDAVPEGFVRLSCG-IEDTDDLVADLERAL 363 (366)
T ss_pred CCHHHHHHHHHhCCcce----ecccCCCccchhhhHHHc-----------CCCCCCCeEEEEec-cCCHHHHHHHHHHHH
Confidence 98888889999998633 699999999987543321 12467899999999 999999999999999
Q ss_pred HHh
Q 013210 437 SRM 439 (447)
Q Consensus 437 ~~~ 439 (447)
+++
T Consensus 364 ~~~ 366 (366)
T PRK07582 364 DAL 366 (366)
T ss_pred hhC
Confidence 864
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=383.31 Aligned_cols=342 Identities=18% Similarity=0.187 Sum_probs=284.1
Q ss_pred ccccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh--c--
Q 013210 63 EASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQL--C-- 135 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l--~-- 135 (447)
|+|||+++|++ +.|.+++...||||+|.|.||+.+...++++|++||+++|++ .++|||||||+++++|++. .
T Consensus 7 ~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~ 86 (386)
T COG1104 7 NAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYR 86 (386)
T ss_pred ccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhh
Confidence 58999999998 999999999999999999999999999999999999999985 4999999999999999983 2
Q ss_pred --CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHH
Q 013210 136 --SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 208 (447)
Q Consensus 136 --~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I 208 (447)
+.|+|||++..+|+++.+.++.+ .+ .|++|++++++ |+++|++++ +++|.+|+++++||++|+++|+++|
T Consensus 87 ~~~~~~HIIts~iEH~aVl~~~~~L-e~-~g~~Vtyl~V~~~G~v~~e~L~~al-~~~T~LVSim~aNnE~G~IQpI~ei 163 (386)
T COG1104 87 NAQKGKHIITSAIEHPAVLNTCRYL-ER-QGFEVTYLPVDSNGLVDLEQLEEAL-RPDTILVSIMHANNETGTIQPIAEI 163 (386)
T ss_pred cccCCCeEEEcccccHHHHHHHHHH-Hh-cCCeEEEeCCCCCCeEcHHHHHHhc-CCCceEEEEEecccCeeecccHHHH
Confidence 24789999999999999999555 44 69999999987 999999999 8899999999999999999999999
Q ss_pred HHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHH-HH-HHHHHhhhhhhhcCCCc
Q 013210 209 SRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VN-SMMDLHQGALMLLGPTM 284 (447)
Q Consensus 209 ~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~-~l~~~~~~~~~~~g~~~ 284 (447)
+++|+++|++||+|++| +++++++..+++|++++|.||++|++| + |+++.++.. +. .+....+......|+..
T Consensus 164 ~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkG--i-GaLyv~~~~~~~p~i~GGgQE~g~RsGTen 240 (386)
T COG1104 164 GEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKG--I-GALYVRPGVRLEPLIHGGGQERGLRSGTEN 240 (386)
T ss_pred HHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCc--e-EEEEECCCCccCceeccCcCCCCCCCCCcc
Confidence 99999999999999999 789999999999999999999999998 5 777765543 22 23333333334555544
Q ss_pred cHHHHHH---HHccCCcHHHHHHHHHHHHHHHHHHHHhC-CC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013210 285 NPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKL-GL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 359 (447)
Q Consensus 285 ~~~~a~~---~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~ 359 (447)
.+..+.. +....+.+....+++..++++|.+.|.+. +. .++....++.|+ +++|.|++.
T Consensus 241 v~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~----------------~~~~~f~gv 304 (386)
T COG1104 241 VPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPN----------------ILNFSFPGV 304 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCC----------------eEEEEeCCC
Confidence 4333222 22234556778888999999999999876 44 344332344554 999999976
Q ss_pred HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCC----CeEEEEeCCCCCHHHHHHHHHHH
Q 013210 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA----GLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 360 ~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~----~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
+ .+.++..|+..+ |++|.| |||++.+..+++++.+||+++ +.||||+| ..+++++++.+.++
T Consensus 305 ~-gE~ll~~L~~~g----I~vStG--------SACsS~~~~pShVL~AmG~~~e~a~~siR~S~g-~~tt~eei~~~~~~ 370 (386)
T COG1104 305 E-GESLLLALDLAG----IAVSTG--------SACSSGSLEPSHVLRAMGISEELAHGSIRFSLG-RFTTEEEIDAAAEA 370 (386)
T ss_pred c-HHHHHHhccccC----eEEecc--------ccccCCCCCccHHHHHcCCChHHhCccEEEEcC-CCCCHHHHHHHHHH
Confidence 5 788888888755 899999 889999999999999999974 68999999 99999998888888
Q ss_pred HHHhh
Q 013210 436 LSRMQ 440 (447)
Q Consensus 436 l~~~~ 440 (447)
+.++-
T Consensus 371 l~~~i 375 (386)
T COG1104 371 LKEII 375 (386)
T ss_pred HHHHH
Confidence 77653
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=282.43 Aligned_cols=338 Identities=17% Similarity=0.165 Sum_probs=247.6
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe--EEEeCChHHHHHHHHHHhc-CCCC
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA--AYCTASGMSAISSVLMQLC-SSGG 139 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~--~~~tsggt~A~~~al~~l~-~~gd 139 (447)
+||++..+.+ ++|.+++.+.++||.+. .|+..+...++++|+++|+++|++. |+||+++|||++++++++. ..++
T Consensus 50 ~at~p~~~~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~ 128 (428)
T KOG1549|consen 50 QATGPMDPRVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARFFGD 128 (428)
T ss_pred CcCCCCCHHHHHHHHHHHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhccccc
Confidence 6777887787 99999999999999988 8999999999999999999999854 9999999999999999874 3455
Q ss_pred ----eEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHH
Q 013210 140 ----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210 (447)
Q Consensus 140 ----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~ 210 (447)
+||+...+|+++...++.+.. .|+++++++.. |.+.++++| +++|++|.|+++||++|.++|+++|.+
T Consensus 129 ~~~k~iitl~~eH~~v~~s~~~l~~--~g~~Vt~lpv~~~~~~d~~~~~~~i-~~~T~lv~I~~Vnn~~gv~~Pv~EI~~ 205 (428)
T KOG1549|consen 129 KTKKHIITLQTEHPCVLDSCRALQE--EGLEVTYLPVEDSGLVDISKLREAI-RSKTRLVSIMHVNNEIGVLQPVKEIVK 205 (428)
T ss_pred cccceEEEecccCcchhHHHHHHHh--cCeEEEEeccCccccccHHHHHHhc-CCCceEEEEEecccCccccccHHHHHH
Confidence 999999999999999865544 58999999876 889999999 899999999999999999999999999
Q ss_pred HHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChH---HH--HHHHHHhhhhhhhcCCC
Q 013210 211 LAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN---LV--NSMMDLHQGALMLLGPT 283 (447)
Q Consensus 211 la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~---~~--~~l~~~~~~~~~~~g~~ 283 (447)
+|+++|+.+|+|++| +....+..++++|+++.|+||+||++| + |+++.++. +. ..+....+......|+.
T Consensus 206 icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~--i-GaLYvr~~~~~~~~~p~~~GGgq~r~~rsGT~ 282 (428)
T KOG1549|consen 206 ICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPG--I-GALYVRRKRPRLRVEPPLSGGGQERGLRSGTV 282 (428)
T ss_pred HhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCc--c-eEEEEccCCCcccccCcccCCccccccccCCc
Confidence 999999999999999 788899999999999999999999998 5 89987751 11 11111111111123333
Q ss_pred ccHHHHHH--HHccCCcHHHHHH-HHHHHHHHHHHHHHh-CCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 284 MNPKVAFE--LSERIPHLGLRMK-EHCHRALIFARRMKK-LGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 284 ~~~~~a~~--~~~~~~~l~~~~~-~~~~~~~~l~~~L~~-~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
..+..... +.+-........+ ...++...+...+.. .+. .++.++.. .+.++++|.++.
T Consensus 283 ~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~~----------------~~~~~~~~~~~~ 346 (428)
T KOG1549|consen 283 ATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGKS----------------RYPGLVSLSFPY 346 (428)
T ss_pred CchhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhCchhhccCCccc----------------ccccceeeeccc
Confidence 22222111 1111111111111 122333444444422 211 23333311 245588888873
Q ss_pred HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCC----CeEEEEeCCCCCHHHHHHHHHH
Q 013210 359 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA----GLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 359 ~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~----~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
.+ ...++..++. ++.+.| ++|.+....++..+.+.|.+. ..||||+| ..+++++++.+.+
T Consensus 347 ~~-g~~~~~~~~~------~~l~s~--------~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G-~y~t~~di~~~~~ 410 (428)
T KOG1549|consen 347 VE-GESLLMDLKD------VALSSG--------SACTSASLEPSYVLRAIGVDEDLAHSSIRISIG-RYTTEEDIDYLVD 410 (428)
T ss_pred cc-Ccchhhhhhh------hhhccc--------chhhcCCCCcchhhhhcCcchhhhcceeEEeee-eeCcHHHHHHHHH
Confidence 32 3455556665 677877 666665556777888888743 57999999 9999999999998
Q ss_pred HHHHhh
Q 013210 435 ALSRMQ 440 (447)
Q Consensus 435 al~~~~ 440 (447)
++.+..
T Consensus 411 ~i~~~v 416 (428)
T KOG1549|consen 411 AIKKLV 416 (428)
T ss_pred HHHHHH
Confidence 887764
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=276.87 Aligned_cols=342 Identities=14% Similarity=0.125 Sum_probs=246.4
Q ss_pred ccccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc---
Q 013210 63 EASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLC--- 135 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~--- 135 (447)
+++||+..+.+ +.+.+++...++||.+.|.|+....+.+++.++++++.+++ +.++||+|+++++++++.++.
T Consensus 5 ~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~ 84 (382)
T TIGR03403 5 NNATTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDE 84 (382)
T ss_pred CcCCCCCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhh
Confidence 45777777777 88888888888999988888877777777888888877764 569999999999999998762
Q ss_pred --CC-CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHH
Q 013210 136 --SS-GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 207 (447)
Q Consensus 136 --~~-gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~ 207 (447)
++ +++|+++..+|+++...+. .+.. .|.++.+++.+ |++++++++ ++++++|++++++||||.+.|+++
T Consensus 85 ~~~~~~~~vi~~~~e~ps~~~~~~-~~~~-~G~~v~~v~~~~~g~~d~~~l~~~i-~~~t~lv~~~~~~n~tG~~~~~~~ 161 (382)
T TIGR03403 85 ILKGGKNHIITTEVEHPAVRATCA-FLES-LGVEVTYLPINEQGTITAEQVREAI-TEKTALVSVMWANNETGMIFPIKE 161 (382)
T ss_pred cccCCCCEEEEcCCccHHHHHHHH-HHHH-CCCEEEEEecCCCCCCCHHHHHHhc-ccCCeEEEEEcccCCCccccCHHH
Confidence 45 4689999999999887763 3333 68899888764 789999999 778999999999999999999999
Q ss_pred HHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHH-HH-HHHHhhhhhhhcCCC
Q 013210 208 LSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV-NS-MMDLHQGALMLLGPT 283 (447)
Q Consensus 208 I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~-~~-l~~~~~~~~~~~g~~ 283 (447)
|.++|+++|+++|+|+++ +....+..+.++|+++.|+||++|++| + |+++.++... .. +...........|+.
T Consensus 162 I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G--~-g~l~vr~~~~~~p~~~g~~~~~~~~~gt~ 238 (382)
T TIGR03403 162 IGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKG--V-GGLYIRKGVELTPLFHGGEHMGGRRSGTL 238 (382)
T ss_pred HHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCc--e-EEEEECCCCCCCCcccCCCCCCCcccCCc
Confidence 999999999999999998 345566677799999999999999888 4 7776554321 11 100000000112222
Q ss_pred cc-HH-HHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013210 284 MN-PK-VAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 359 (447)
Q Consensus 284 ~~-~~-~a~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~ 359 (447)
.. .. ++..+++.. +.+....++..++++++.+.|++++. ++..+.-.. .+.++.|.+++.
T Consensus 239 ~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 302 (382)
T TIGR03403 239 NVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHR----------------VPNTILISIKGV 302 (382)
T ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCC----------------cCCEEEEEeCCC
Confidence 21 11 222222221 22444556778888899999987654 555432112 223778888753
Q ss_pred HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHH
Q 013210 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 360 ~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
+ ...+...|... | |.++.| +.|.+....++.++.++|.+ .+.||+|++ ..+++++|+.|.++
T Consensus 303 ~-~~~~~~~L~~~---g-I~v~~g--------~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~-~~~t~~did~~~~~ 368 (382)
T TIGR03403 303 E-GEAMLWDLNKA---G-IAASTG--------SACASEDLEANPVMVAIGADKELAHTAIRLSLS-RFTTEEEIDYTIEV 368 (382)
T ss_pred C-HHHHHHhhccC---C-EEEEch--------hccCCCCCCcCHHHHHcCCChHHhCeeEEEECC-CCCCHHHHHHHHHH
Confidence 3 45566667653 3 788888 44444444556788888875 378999999 99999999999999
Q ss_pred HHHhh
Q 013210 436 LSRMQ 440 (447)
Q Consensus 436 l~~~~ 440 (447)
|+++.
T Consensus 369 l~~~~ 373 (382)
T TIGR03403 369 FKKAV 373 (382)
T ss_pred HHHHH
Confidence 87654
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=269.51 Aligned_cols=336 Identities=17% Similarity=0.191 Sum_probs=253.0
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCC-CCccccCCCCchHHHHHHHHHHHhCCCe---EEEeCChHHHHHHHHHHh---c
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGTEA---AYCTASGMSAISSVLMQL---C 135 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~l~~~ia~l~g~~~---~~~tsggt~A~~~al~~l---~ 135 (447)
.+++.....+ +.+.+++...++|.. +.|..+.......+++|+.+|+++|++. |+||++.|+|++.++.++ +
T Consensus 29 aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~ 108 (405)
T COG0520 29 AATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSL 108 (405)
T ss_pred cccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhh
Confidence 3444422234 788888877777765 5677777777888999999999999763 999999999999999988 6
Q ss_pred CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHH
Q 013210 136 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210 (447)
Q Consensus 136 ~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~ 210 (447)
++||+||++..+|++....|.....+ .|+++++++.+ ++++++..+ +++|++|.+.+++|.||.+.|+++|++
T Consensus 109 ~~gdeIv~s~~EH~sn~~pw~~~~~~-~Ga~v~~i~~~~~g~~~~~~~~~~i-~~~Tklvais~vSn~tG~~~pv~~I~~ 186 (405)
T COG0520 109 KPGDEIVVSDLEHHSNIVPWQELAKR-TGAKVRVIPLDDDGLLDLDALEKLI-TPKTKLVALSHVSNVTGTVNPVKEIAE 186 (405)
T ss_pred cCCCEEEEccCcchhhHHHHHHHHHh-cCcEEEEEecCCCCCcCHHHHHHhc-CCCceEEEEECccccccccchHHHHHH
Confidence 88999999999999999999766665 79999998864 689999988 899999999999999999999999999
Q ss_pred HHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCC-CCeeEEEEEcChHHHHHHHHHhhhh-----------
Q 013210 211 LAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGG-ADIIAGAVCGPANLVNSMMDLHQGA----------- 276 (447)
Q Consensus 211 la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~-g~~igG~l~~~~~~~~~l~~~~~~~----------- 276 (447)
+||++|+++++|.+| +.++.++.++|+|++.+|.|||+.+| | + |++++++++++.+.+...++
T Consensus 187 la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~G--i-GvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~ 263 (405)
T COG0520 187 LAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTG--I-GVLYVRKELLEELEPFLGGGGMIEYVSRDEG 263 (405)
T ss_pred HHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCc--e-EEEEEchHHHhhcCCcccCCCceeeeccccc
Confidence 999999999999998 66788888999999999999955555 5 5 99999999998773321111
Q ss_pred -------hhhcCCCccHHHHHH---HHccCCc--HHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhc
Q 013210 277 -------LMLLGPTMNPKVAFE---LSERIPH--LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMAN 343 (447)
Q Consensus 277 -------~~~~g~~~~~~~a~~---~~~~~~~--l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~ 343 (447)
...-..++....+.. +++.+.. +....++.+++.+++.+.|++++. ++..|.. .
T Consensus 264 ~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~-~------------ 330 (405)
T COG0520 264 VTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPD-A------------ 330 (405)
T ss_pred ccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc-c------------
Confidence 111122222222221 1221111 234445568888899999998875 7776652 0
Q ss_pred cCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013210 344 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 423 (447)
Q Consensus 344 ~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~ 423 (447)
..+++++|.+++.. ...+...|... | |++..|..|... . .+..+++ +.+|+|++ ..
T Consensus 331 ---~r~~~vsF~v~~~~-~~dv~~~L~~~---g-I~vr~g~~ca~p---~-----------~~~~~~~-~~iR~S~~-~Y 386 (405)
T COG0520 331 ---DRGGIVSFNVKGIH-PHDVATLLDEK---G-IAVRAGHHCAQP---L-----------HRLLGVD-ATIRASLH-LY 386 (405)
T ss_pred ---cCceEEEEEeCCCC-HHHHHHHHHhC---C-eEEEeccccccH---H-----------HHhcCCC-CceEEEEe-ec
Confidence 25679999998653 45666666653 3 788888543221 0 1223443 44999999 99
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 013210 424 TLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 424 ~~~~~i~~l~~al~~~~~ 441 (447)
+++++|+.|.++|+++.+
T Consensus 387 Nt~edid~l~~aL~~~~~ 404 (405)
T COG0520 387 NTEEDVDRLLEALKKALA 404 (405)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 999999999999998753
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=274.46 Aligned_cols=344 Identities=15% Similarity=0.152 Sum_probs=249.1
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhc----C
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLC----S 136 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~----~ 136 (447)
+++++..+.+ +++.+.++..++||++.|..++......+++|+.+|+++|+ +.+++|+|+++++..++.+++ +
T Consensus 7 a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~ 86 (381)
T PRK02948 7 AATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQ 86 (381)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccC
Confidence 4566665566 88888888778888888887777777889999999999986 459999999999999988775 5
Q ss_pred CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHH
Q 013210 137 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211 (447)
Q Consensus 137 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~l 211 (447)
+|++|+++..+|+++...+. .+.. .|.++..++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++
T Consensus 87 ~g~~vv~~~~~h~s~~~~~~-~~~~-~g~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~~~~~~n~tG~~~~~~~I~~l 163 (381)
T PRK02948 87 NKKHIITTPMEHASIHSYFQ-SLES-QGYTVTEIPVDKSGLIRLVDLERAI-TPDTVLASIQHANSEIGTIQPIAEIGAL 163 (381)
T ss_pred CCCEEEECCcccHHHHHHHH-HHHh-CCCEEEEEeeCCCCCCCHHHHHHhc-CCCCEEEEEECCcCCcEeehhHHHHHHH
Confidence 68999999999998877763 3333 68888877653 789999998 7789999999999999999999999999
Q ss_pred HHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHH-HHHHHHHh-hhhhhhcCCC--cc
Q 013210 212 AHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLH-QGALMLLGPT--MN 285 (447)
Q Consensus 212 a~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~-~~~~~~~g~~--~~ 285 (447)
|+++|+++|+|+++ +....+..++++|+++.|+||++|++| + |+++.++++ +..+.... .......++. +.
T Consensus 164 ~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 240 (381)
T PRK02948 164 LKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKG--V-GAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPG 240 (381)
T ss_pred HHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCc--E-EEEEEcCCCCCCCcccCCCCCCCcCCCCccHHH
Confidence 99999999999887 444556667799999999999999888 4 777766554 11111000 0000012222 22
Q ss_pred HHHHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013210 286 PKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 364 (447)
Q Consensus 286 ~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~ 364 (447)
..++..++... +.+.+..+++.++++++.+.|++.+.++...+.. .+ ....+++|.+++.. ...
T Consensus 241 ~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~-~~-------------~~~~i~~~~~~~~~-~~~ 305 (381)
T PRK02948 241 IAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHS-TS-------------CLPHIIGVTIKGIE-GQY 305 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCC-cc-------------CcCCEEEEEeCCCC-HHH
Confidence 22222333322 4456667788999999999999887644322101 00 12347888877433 355
Q ss_pred HHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 365 l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+...|.. .| |.++.| ++|.+....+++++.++|.+ .+.||||+| ..+++++++.+.++|+++.
T Consensus 306 ~~~~l~~---~g-I~v~~g--------~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~-~~~t~~di~~l~~~l~~~~ 372 (381)
T PRK02948 306 TMLECNR---RG-IAISTG--------SACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFG-QQTTKDQIDTTIHALETIG 372 (381)
T ss_pred HHHhccc---CC-EEEEch--------HhcCCCCCCCCHHHHHcCCChHHhCceEEEEcC-CCCCHHHHHHHHHHHHHHH
Confidence 6666654 34 677877 44544445567778888863 478999999 9999999999999998764
Q ss_pred h
Q 013210 441 D 441 (447)
Q Consensus 441 ~ 441 (447)
+
T Consensus 373 ~ 373 (381)
T PRK02948 373 N 373 (381)
T ss_pred H
Confidence 3
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=274.10 Aligned_cols=334 Identities=16% Similarity=0.180 Sum_probs=239.7
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCC-CCccccCCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHh----
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQL---- 134 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l---- 134 (447)
+++++..+.+ +.+.++++..++|+. +.|..++......+++|+.+|+++|+ +.++||+|+|++++.++.++
T Consensus 30 a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~ 109 (406)
T PRK09295 30 AASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSN 109 (406)
T ss_pred cccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhc
Confidence 4555655555 888888877777774 45665666677789999999999986 35999999999999998763
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHH
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 209 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~ 209 (447)
+++||+|+++.++|++....+.....+ .|++++.++.+ |+++|++++ +++|++|++++++||||.++|+++|.
T Consensus 110 ~~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~l~~~~n~tG~~~~~~~i~ 187 (406)
T PRK09295 110 VRAGDNIIISEMEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPALF-DERTRLLAITHVSNVLGTENPLAEMI 187 (406)
T ss_pred CCCcCEEEECcchhhHHHHHHHHHHHH-cCcEEEEEecCCCCCCCHHHHHHhc-CCCcEEEEEecchhcccccCCHHHHH
Confidence 578999999999999876666444444 68888888653 789999999 77899999999999999999999999
Q ss_pred HHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh-----------
Q 013210 210 RLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----------- 276 (447)
Q Consensus 210 ~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----------- 276 (447)
++|+++|+++++|++| +...++...+++|+++.|+||++|++| + |+++.++++++.+.....+.
T Consensus 188 ~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 264 (406)
T PRK09295 188 ALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG--I-GILYVKEALLQEMPPWEGGGSMIATVSLTEG 264 (406)
T ss_pred HHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCC--c-EEEEEchHhHhhCCCcccCCceeeeeecCCc
Confidence 9999999999999999 334455556789999999999999777 4 89998888766553211100
Q ss_pred -------hhhcCCCccHHHHH---HHHccCC--cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhc
Q 013210 277 -------LMLLGPTMNPKVAF---ELSERIP--HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMAN 343 (447)
Q Consensus 277 -------~~~~g~~~~~~~a~---~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~ 343 (447)
.....++++..... .++..+. .+....++..++++++.+.|++++ .++..|.
T Consensus 265 ~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~--------------- 329 (406)
T PRK09295 265 TTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--------------- 329 (406)
T ss_pred cccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC---------------
Confidence 00111122222111 1221111 233444566788888999988774 4665442
Q ss_pred cCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013210 344 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 423 (447)
Q Consensus 344 ~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~ 423 (447)
..+++++|.+++.. ...+...|.. +| +.++.|..|.. .....+|. ++.||+|++ ..
T Consensus 330 ---~~~~iv~~~~~~~~-~~~~~~~L~~---~g-I~v~~g~~c~~--------------~~~~~~~~-~~~iRiS~~-~y 385 (406)
T PRK09295 330 ---NRLGVIAFNLGKHH-AYDVGSFLDN---YG-IAVRTGHHCAM--------------PLMAYYNV-PAMCRASLA-MY 385 (406)
T ss_pred ---CCceEEEEEECCcC-HHHHHHHHHh---CC-eEEeccccchH--------------HHHHHHCC-CCEEEEEcc-CC
Confidence 12459999987532 3455566654 34 67787844321 12334454 368999999 99
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 013210 424 TLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 424 ~~~~~i~~l~~al~~~~~ 441 (447)
+++++|+.|.++|+++..
T Consensus 386 nt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 386 NTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999988753
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=269.53 Aligned_cols=330 Identities=18% Similarity=0.206 Sum_probs=241.0
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh----c
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQL----C 135 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l----~ 135 (447)
+++++..+++ +++.+.+...++||.+ .|.+++.....++++++.+++++|++ .++||+|+|+|++.++.++ .
T Consensus 6 a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~ 85 (364)
T PLN02651 6 QATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYK 85 (364)
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4556665565 7777777777888876 67777766777899999999999975 5999999999999888665 3
Q ss_pred CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHH
Q 013210 136 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210 (447)
Q Consensus 136 ~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~ 210 (447)
++||+|+++..+|+++...+... .+ .|++++.++.+ |++++++++ ++++++|++++++|+||.++|+++|.+
T Consensus 86 ~~g~~vl~~~~~h~s~~~~~~~~-~~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~v~~~~n~tG~~~~l~~I~~ 162 (364)
T PLN02651 86 DKKKHVITTQTEHKCVLDSCRHL-QQ-EGFEVTYLPVKSDGLVDLDELAAAI-RPDTALVSVMAVNNEIGVIQPVEEIGE 162 (364)
T ss_pred CCCCEEEEcccccHHHHHHHHHH-Hh-cCCEEEEEccCCCCcCCHHHHHHhc-CCCcEEEEEECCCCCceecccHHHHHH
Confidence 67899999999999987777433 33 68888888763 799999999 788999999999999999999999999
Q ss_pred HHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh----hhhcCCCc
Q 013210 211 LAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----LMLLGPTM 284 (447)
Q Consensus 211 la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----~~~~g~~~ 284 (447)
+||++|+++++|++| +.+++++.++++|+++.|.||++|++| + |+++.+++....+.....+. ....|+.
T Consensus 163 ~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G--~-g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~- 238 (364)
T PLN02651 163 LCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKG--V-GALYVRRRPRVRLEPLMSGGGQERGRRSGTE- 238 (364)
T ss_pred HHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCc--e-EEEEEcCCCCCCCCccccCCCccCCccCCCc-
Confidence 999999999999999 446778888899999999999977666 4 77777665544333221110 1122322
Q ss_pred cHHHHHHHHccCC----cHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 285 NPKVAFELSERIP----HLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 285 ~~~~a~~~~~~~~----~l~~~~~~~~~~~~~l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
+......+...++ ......++..++++++.+.|++ . +.++..|.-+.. ...++++|.+++
T Consensus 239 ~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~--------------~~~~i~~~~~~~ 304 (364)
T PLN02651 239 NTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEK--------------RYPGTLNLSFAY 304 (364)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCccc--------------CcCCEEEEEeCC
Confidence 2211111111221 2233445677888888888875 3 447766531110 124499999985
Q ss_pred HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCC----CeEEEEeCCCCCHHHHHH
Q 013210 359 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA----GLVRMSVGYLGTLDQRWS 430 (447)
Q Consensus 359 ~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~----~~iRiS~g~~~~~~~~i~ 430 (447)
.. .+.+...|.. |+++.| ++|......+++.++++|.++ +.||+|++ ..+++++|+
T Consensus 305 ~~-~~~~~~~L~~------i~v~~g--------~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~-~~~t~~did 364 (364)
T PLN02651 305 VE-GESLLMGLKE------VAVSSG--------SACTSASLEPSYVLRALGVPEEMAHGSLRLGVG-RFTTEEEVD 364 (364)
T ss_pred CC-HHHHHHHhCC------EEEEch--------hhcCCCCCCcCHHHHHcCCChHHhCceEEEEcC-CCCCHHHcC
Confidence 43 4577777764 688989 556655556778888898764 79999999 999888764
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=268.39 Aligned_cols=331 Identities=17% Similarity=0.198 Sum_probs=235.9
Q ss_pred ccccccCCH-HHHHHhhcCCCCCCC-CCccccCCCCchHHHHHHHHHHHhCC-C--eEEEeCChHHHHHHHHHHh----c
Q 013210 65 SATFTVMEP-ETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGT-E--AAYCTASGMSAISSVLMQL----C 135 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~l~~~ia~l~g~-~--~~~~tsggt~A~~~al~~l----~ 135 (447)
++++..+.+ +.+.++++..++|+. +.|..++......+++++.+|+++|+ + .++||+|+|+++++++.++ +
T Consensus 27 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~ 106 (401)
T PRK10874 27 ATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRL 106 (401)
T ss_pred cccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccC
Confidence 444443345 778788877777764 35656666667789999999999998 3 4999999999999999887 3
Q ss_pred CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHH
Q 013210 136 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210 (447)
Q Consensus 136 ~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~ 210 (447)
++||+|++++++|++....+.....+ .|++++.++.+ |++++++++ +++|++|++++++||||.++|+++|.+
T Consensus 107 ~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~i~~~~n~tG~~~~~~~i~~ 184 (401)
T PRK10874 107 QPGDEIIVSEAEHHANLVPWLMVAQQ-TGAKVVKLPLGADRLPDVDLLPELI-TPRTRILALGQMSNVTGGCPDLARAIT 184 (401)
T ss_pred CCcCEEEECCcchHHHHHHHHHHHHH-hCCEEEEEecCCCCcCCHHHHHHhc-CcCcEEEEEeCCcccccCcCCHHHHHH
Confidence 78999999999999876555444344 68888887753 789999999 889999999999999999999999999
Q ss_pred HHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh------------
Q 013210 211 LAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA------------ 276 (447)
Q Consensus 211 la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~------------ 276 (447)
+|+++|+++|+|++| +.+..+...+++|+++.|+||.+|++| + |+++.++++++.+.....+.
T Consensus 185 l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (401)
T PRK10874 185 LAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTG--I-GVLYGKSELLEAMSPWQGGGKMLTEVSFDGFT 261 (401)
T ss_pred HHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCc--c-EEEEEchHHHhcCCCeecCCcceEeeccCccC
Confidence 999999999999999 455566666789999999999999777 4 99999988877664321100
Q ss_pred -----h-hhcCCCc--cHHHHHHHHccCC--cHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccC
Q 013210 277 -----L-MLLGPTM--NPKVAFELSERIP--HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKE 345 (447)
Q Consensus 277 -----~-~~~g~~~--~~~~a~~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~ 345 (447)
. ...|+.. ...+...++..+. ......++..++++++.+.|+++ +.++..+.
T Consensus 262 ~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~----------------- 324 (401)
T PRK10874 262 PQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQ----------------- 324 (401)
T ss_pred CCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-----------------
Confidence 0 0112111 1111112221111 12233455677788888888877 33444321
Q ss_pred CCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH
Q 013210 346 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 425 (447)
Q Consensus 346 ~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~ 425 (447)
.+++++|.+++.. ...+.+.|... | +.++.|..++ ......+|. .+.||+|++ ..++
T Consensus 325 --~~~i~~~~~~~~~-~~~~~~~L~~~---g-I~v~~g~~~~--------------~~~~~~~g~-~~~iRiS~~-~~nt 381 (401)
T PRK10874 325 --DSSLLAFDFAGVH-HSDLVTLLAEY---G-IALRAGQHCA--------------QPLLAALGV-TGTLRASFA-PYNT 381 (401)
T ss_pred --CCcEEEEEECCcC-HHHHHHHHHHC---C-cEEeccccch--------------HHHHHHhCC-CCEEEEEec-ccCC
Confidence 2348888887533 35666666653 3 5777763321 123334454 378999999 9999
Q ss_pred HHHHHHHHHHHHHhh
Q 013210 426 DQRWSQFEKALSRMQ 440 (447)
Q Consensus 426 ~~~i~~l~~al~~~~ 440 (447)
+++++.|.++|+++-
T Consensus 382 ~edid~ll~al~~~~ 396 (401)
T PRK10874 382 QSDVDALVNAVDRAL 396 (401)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=265.98 Aligned_cols=332 Identities=16% Similarity=0.133 Sum_probs=233.8
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCC-CCccccCCCCchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHh----
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQL---- 134 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l---- 134 (447)
+++++..+.+ +.+.+.+....+|+. +.|..++.....++++|+.+|+++|++ .++||+|+|+++++++.++
T Consensus 23 a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~ 102 (398)
T TIGR03392 23 AATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPR 102 (398)
T ss_pred ccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhcc
Confidence 3444444445 777777766666764 345555555566789999999999973 4899999999999999887
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHH
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 209 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~ 209 (447)
+++||+|++++++|++....+.....+ .|+++++++.+ |++++++++ +++|++|++++++||||.+.|+++|.
T Consensus 103 ~~~gd~Vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~~~~~l~~~i-~~~t~lv~i~~~~n~tG~~~~~~~i~ 180 (398)
T TIGR03392 103 LQPGDEIIVSEAEHHANLIPWLMVAQQ-TGAKVVKLPIGADLLPDIRQLPELL-TPRTRILALGQMSNVTGGCPDLARAI 180 (398)
T ss_pred CCCCCEEEECCcchhHHHHHHHHHHHH-cCcEEEEEecCCCCCcCHHHHHHHh-ccCceEEEEECccccccccCCHHHHH
Confidence 478999999999999865544333334 68888888754 789999999 78899999999999999999999999
Q ss_pred HHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh-----------
Q 013210 210 RLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----------- 276 (447)
Q Consensus 210 ~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----------- 276 (447)
++|+++|+++++|++| +.+..+...+++|++++|+||.+|++| + |+++.++++++.+.....+.
T Consensus 181 ~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (398)
T TIGR03392 181 TLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTG--I-GVLYGKTELLEAMPPWQGGGKMLSHVSFDGF 257 (398)
T ss_pred HHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCc--e-EEEEEcHHHHhhCCCeecCCceEeecccccc
Confidence 9999999999999999 444455556689999999999999776 5 99999988877664321100
Q ss_pred ------hh-hcCCCcc-H-HHHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhcc
Q 013210 277 ------LM-LLGPTMN-P-KVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANK 344 (447)
Q Consensus 277 ------~~-~~g~~~~-~-~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~ 344 (447)
.. ..|+... . .++..++..+ ..+....++..++++++.+.|++++ .++..+.
T Consensus 258 ~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~---------------- 321 (398)
T TIGR03392 258 IPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCP---------------- 321 (398)
T ss_pred ccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC----------------
Confidence 00 1122211 1 1111222211 1233444566778888888888764 3443221
Q ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013210 345 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 424 (447)
Q Consensus 345 ~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~ 424 (447)
.+++++|.+++.. .+.+.+.|... | |.++.|..|+ ......+|. ++.||+|++ ..+
T Consensus 322 ---~~~i~~~~~~~~~-~~~l~~~L~~~---g-I~v~~g~~~~--------------~~~~~~~g~-~~~iRvS~~-~~~ 377 (398)
T TIGR03392 322 ---GSSLLAFDFAGVH-HSDLAALLAES---G-IALRAGQHCA--------------QPLMAALGV-SGTLRASFA-PYN 377 (398)
T ss_pred ---CCcEEEEEeCCcC-HHHHHHHHHhC---C-EEEecCccch--------------HHHHHHhCC-CCEEEEEee-ccC
Confidence 2348988887543 35677777653 3 6777774332 122334454 378999999 899
Q ss_pred HHHHHHHHHHHHHHhh
Q 013210 425 LDQRWSQFEKALSRMQ 440 (447)
Q Consensus 425 ~~~~i~~l~~al~~~~ 440 (447)
++++++.+.++|+++.
T Consensus 378 t~~ei~~l~~~l~~~~ 393 (398)
T TIGR03392 378 TQQDVDALVDAVGAAL 393 (398)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=265.00 Aligned_cols=339 Identities=16% Similarity=0.163 Sum_probs=241.4
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc---CC
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC---SS 137 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~---~~ 137 (447)
+++++..+++ +.+.+++...++||.+.+.++......++++++.+++++|++ .++||+|+|+++++++.++. .+
T Consensus 6 aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~ 85 (379)
T TIGR03402 6 NATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPE 85 (379)
T ss_pred cCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCC
Confidence 4666666666 777777777778887766666656677899999999999975 49999999999999998764 45
Q ss_pred CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHH
Q 013210 138 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212 (447)
Q Consensus 138 gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la 212 (447)
|++|+++..+|+++...+... .+ .|.++++++.+ |++++++++ ++++++|++++++||||.+.|+++|.++|
T Consensus 86 ~~~vv~~~~~~~s~~~~~~~~-~~-~G~~v~~v~~~~~g~~~~~~l~~~i-~~~~~lv~i~~~~n~tG~~~~~~~I~~l~ 162 (379)
T TIGR03402 86 KRHIITTAVEHPAVLSLCQHL-EK-QGYKVTYLPVDEEGRLDLEELRAAI-TDDTALVSVMWANNETGTIFPIEEIGEIA 162 (379)
T ss_pred CCeEEEcccccHHHHHHHHHH-HH-cCCEEEEEccCCCCcCCHHHHHHhc-CCCcEEEEEEcccCCeeecccHHHHHHHH
Confidence 689999999999887766433 33 58888888753 789999999 78899999999999999999999999999
Q ss_pred HhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh----hhhhcCCCc-c
Q 013210 213 HDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG----ALMLLGPTM-N 285 (447)
Q Consensus 213 ~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~----~~~~~g~~~-~ 285 (447)
+++|+++|+|++| +..+++..++++|+++.|+||++|++| + |+++.+++.. +.....+ .....|+.. .
T Consensus 163 ~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G--~-g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~ 237 (379)
T TIGR03402 163 KERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKG--V-GALYIRKGTR--FRPLLRGGHQERGRRAGTENVP 237 (379)
T ss_pred HHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCc--e-EEEEECCCCC--CCCcccCCccCCCcCCCCccHH
Confidence 9999999999999 445566677899999999999888777 4 7777665431 1111100 001222221 1
Q ss_pred HHHHH-HHHcc-CCcHHHHHHHHHHHHHHHHHHHHh-CCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH
Q 013210 286 PKVAF-ELSER-IPHLGLRMKEHCHRALIFARRMKK-LGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK 361 (447)
Q Consensus 286 ~~~a~-~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~-~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~ 361 (447)
...+. .++.. .+.+....++..++++++.+.|++ ++. ++..+.... .+++++|.++..+
T Consensus 238 ~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~- 300 (379)
T TIGR03402 238 GIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKR----------------LPNTVNISFEYIE- 300 (379)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccC----------------CCCEEEEEecCCC-
Confidence 11111 11111 123444556677888888888875 544 444332111 2337777776433
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
...+...|... | |.++.| +.|......+++.+.++|.. .+.||+|++ ..+++++|+.+.++|+
T Consensus 301 ~~~~~~~l~~~---g-I~v~~g--------~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~-~~~t~~di~~~~~~l~ 367 (379)
T TIGR03402 301 GEAILLLLDME---G-ICASSG--------SACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLS-RYNTEEDIDYVLEVLP 367 (379)
T ss_pred HHHHHHhhccC---C-EEEEch--------hhcCCCCCCcCHHHHHcCCChhhcCceEEEEcC-CCCCHHHHHHHHHHHH
Confidence 45677777653 4 688888 34444444456777888875 478999999 9999999999998887
Q ss_pred Hhh
Q 013210 438 RMQ 440 (447)
Q Consensus 438 ~~~ 440 (447)
++.
T Consensus 368 ~~~ 370 (379)
T TIGR03402 368 PII 370 (379)
T ss_pred HHH
Confidence 764
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=266.13 Aligned_cols=339 Identities=18% Similarity=0.163 Sum_probs=236.4
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC---- 135 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~---- 135 (447)
++++++.+.+ +.+.+++...++||.+ .+.++......++++++.+++++|++ .++||+|+|+++++++.++.
T Consensus 10 aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~ 89 (402)
T TIGR02006 10 AATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYK 89 (402)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhc
Confidence 4556665666 7777777666778764 45555555567889999999999975 59999999999999987753
Q ss_pred CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHH
Q 013210 136 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210 (447)
Q Consensus 136 ~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~ 210 (447)
++||+|+++.++|+++...+... .+ .|+++++++.+ |++++++++ ++++++|++++++||||.+.|+++|.+
T Consensus 90 ~~g~~Vi~~~~~h~s~~~~~~~~-~~-~g~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~v~~~~n~tG~~~~~~~I~~ 166 (402)
T TIGR02006 90 SKGNHIITSKTEHKAVLDTCRYL-ER-EGFEVTYLPPKSNGLIDLEELKAAI-RDDTILVSIMHVNNEIGVIQDIAAIGE 166 (402)
T ss_pred CCCCEEEECCCccHHHHHHHHHH-Hh-cCCEEEEEccCCCCcCCHHHHHHhc-CCCCEEEEEECCCcCceecccHHHHHH
Confidence 57899999999999988776432 33 58888888754 899999999 778999999999999999999999999
Q ss_pred HHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh----hhhcCCCc
Q 013210 211 LAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----LMLLGPTM 284 (447)
Q Consensus 211 la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----~~~~g~~~ 284 (447)
+|+++|+++|+|++| +..+++..+.++|+++.|+||++|++| + |+++.+++....+.....+. ....|+..
T Consensus 167 l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~ 243 (402)
T TIGR02006 167 ICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKG--I-GALYVRRKPRVRLEALIHGGGHERGMRSGTLP 243 (402)
T ss_pred HHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCc--e-EEEEEccCCCCCCCceecCCCccCCccCCCcc
Confidence 999999999999999 445566667799999999999998767 4 66665543322222111110 01122222
Q ss_pred c-HHHHH-HHHccC-CcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH
Q 013210 285 N-PKVAF-ELSERI-PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 360 (447)
Q Consensus 285 ~-~~~a~-~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~ 360 (447)
. ...+. .+++.+ +.+..+.++..++++++.+.|++++. .+..+.....| .++.|.|....
T Consensus 244 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p----------------~~~~v~f~~~~ 307 (402)
T TIGR02006 244 THQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVP----------------GNLNVSFNYVE 307 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCC----------------CeEEEEEeCcC
Confidence 1 11111 112111 23455566778888899999887653 44332211112 13334444221
Q ss_pred HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 361 ~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
.+.+...|+. +.++.| +.|.+....++..+.++|++ .+.||+|+| ..+++++++.|.++|
T Consensus 308 -~~~~~~~l~~------i~v~~G--------~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~-~~~t~edid~l~~~l 371 (402)
T TIGR02006 308 -GESLIMALKD------LAVSSG--------SACTSASLEPSYVLRALGINDELAHSSIRFTIG-RFTTEEEIDYAVKLV 371 (402)
T ss_pred -HHHHHHhcCC------EEEech--------hhcCCCCCCccHHHHHcCCChhhcCceEEEEec-CCCCHHHHHHHHHHH
Confidence 2345555543 677888 44554455566777888886 478999999 999999999999888
Q ss_pred HHhh
Q 013210 437 SRMQ 440 (447)
Q Consensus 437 ~~~~ 440 (447)
+++.
T Consensus 372 ~~~~ 375 (402)
T TIGR02006 372 KSAI 375 (402)
T ss_pred HHHH
Confidence 7764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=258.05 Aligned_cols=272 Identities=23% Similarity=0.272 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHh----C----CCe-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G----TEA-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..+||+.||+.+ | .+. +++|+|+++|+..++++++.+||+|++++|.|+.+...+. ..|.++..++
T Consensus 67 ~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~-----~~gg~~v~v~ 141 (393)
T COG0436 67 IPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVK-----LAGGKPVPVP 141 (393)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHH-----hcCCEEEEEe
Confidence 356777777765 3 233 9999999999999999999999999999999999988773 3677877776
Q ss_pred C-----C---CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------C
Q 013210 172 I-----S---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------R 234 (447)
Q Consensus 172 ~-----~---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~------~ 234 (447)
. + |+++|++++ +++||+|++++||||||.+.+ +++|+++|++||+++|+||+|..+.++.. +
T Consensus 142 l~~~~~~f~~d~~~l~~~i-~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~ 220 (393)
T COG0436 142 LDEEENGFKPDLEDLEAAI-TPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILE 220 (393)
T ss_pred CCcCccCCcCCHHHHHhhc-CccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhh
Confidence 3 2 799999999 779999999999999999986 77999999999999999999977766531 1
Q ss_pred C----CCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC---cHHHHHHHH
Q 013210 235 L----GADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEH 306 (447)
Q Consensus 235 ~----g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~---~l~~~~~~~ 306 (447)
+ ...+++.|+||.|+++|+|+ ||++++ +++++.+.+.++ ......+.+.+.+|..++...+ .+....+.+
T Consensus 221 ~~~~~~~~i~i~s~SK~~~mtGwRv-G~~v~~~~~l~~~~~~~~~-~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~ 298 (393)
T COG0436 221 LAGARDRTITINSFSKTYGMTGWRI-GWVVGPPEELIAALRKLKS-YLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEY 298 (393)
T ss_pred cCCCcceEEEEecccccccccccce-eEeecChHHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 1 34789999999999999999 999998 888888876666 3334556666777777776553 233444679
Q ss_pred HHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCc
Q 013210 307 CHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 385 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~ 385 (447)
.++++.+.+.|.+.+ +.+..|. ..+.+++..++...+...|...|.. +.| ++|.-|..
T Consensus 299 ~~rrd~l~~~l~~~~g~~~~~~p------------------~Ga~Y~~~~i~~~~d~~~f~~~Ll~--~~g-V~v~PG~~ 357 (393)
T COG0436 299 RERRDLLVEALNEIGGLSVVKPP------------------EGAFYLFPKIPELLDSEEFAKKLLE--EAG-VAVVPGSG 357 (393)
T ss_pred HHHHHHHHHHHHhcCCeeeccCC------------------CeeEEEEeecCCCCCHHHHHHHHHH--hCC-EEEecccc
Confidence 999999999999886 5665521 2455777888743345677766654 233 45555522
Q ss_pred cccccccccccCCCCCHHHHHhcCC--CCCeEEEEeCCCCC
Q 013210 386 ETLMSCSGSSTSSELNAEEKALAGI--SAGLVRMSVGYLGT 424 (447)
Q Consensus 386 ~s~~~~~a~~~~~~~~~~~~~~~g~--~~~~iRiS~g~~~~ 424 (447)
.|. .++.||||++ ..+
T Consensus 358 ----------------------Fg~~~g~~~vRis~~-~~~ 375 (393)
T COG0436 358 ----------------------FGEPPGEGYVRLSLA-TSE 375 (393)
T ss_pred ----------------------cCCCCCCCeEEEEEe-cCH
Confidence 122 3589999999 543
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-30 Score=259.93 Aligned_cols=338 Identities=16% Similarity=0.174 Sum_probs=235.8
Q ss_pred cccccCCH-HHHHHhhcCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHh----cC
Q 013210 66 ATFTVMEP-ETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQL----CS 136 (447)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l----~~ 136 (447)
+++..+.+ +.+.+.+....+|+.+ .|..+.......+++++.+|+++|+ +.++||+|+|++++.++.++ ++
T Consensus 41 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~ 120 (424)
T PLN02855 41 TSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLK 120 (424)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCC
Confidence 33333344 7777777666666644 3444444445678999999999997 35999999999999998763 57
Q ss_pred CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHH
Q 013210 137 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211 (447)
Q Consensus 137 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~l 211 (447)
+||+|+++.++|++....+.....+ .|.++++++.+ |++++++++ +++|++|++++++||||.++|+++|.++
T Consensus 121 ~gd~vl~~~~~~~s~~~~~~~~a~~-~g~~v~~v~~~~~~~~~~~~l~~~i-~~~t~lv~i~~~~n~tG~~~~~~~I~~l 198 (424)
T PLN02855 121 PGDEVILSVAEHHSNIVPWQLVAQK-TGAVLKFVGLTPDEVLDVEQLKELL-SEKTKLVATHHVSNVLGSILPVEDIVHW 198 (424)
T ss_pred CcCEEEECCCccHHHHHHHHHHHHH-cCCEEEEEecCCCCCcCHHHHHHHh-ccCceEEEEeCccccccccCCHHHHHHH
Confidence 8999999999999877666544444 68888888753 789999999 7799999999999999999999999999
Q ss_pred HHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh-------------
Q 013210 212 AHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA------------- 276 (447)
Q Consensus 212 a~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~------------- 276 (447)
|+++|+++++|++| +...++..++++|+++.|+||++|++| + |+++.++++++.+.....+.
T Consensus 199 ~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~ 275 (424)
T PLN02855 199 AHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTG--I-GFLWGKSDLLESMPPFLGGGEMISDVFLDHSTY 275 (424)
T ss_pred HHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCc--c-EEEEEchhhhhcCCCEecCCCceeeeecCcccc
Confidence 99999999999999 334456666789999999999888776 4 99998888876654321100
Q ss_pred ----hhhcCCCccHH--HHH-HHHccC--CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCC
Q 013210 277 ----LMLLGPTMNPK--VAF-ELSERI--PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEY 346 (447)
Q Consensus 277 ----~~~~g~~~~~~--~a~-~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~ 346 (447)
.....++.... .+. .++..+ ..+....++..++++++.+.|++++ .++..|.. ..+.
T Consensus 276 ~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~-~~~~------------ 342 (424)
T PLN02855 276 APPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKP-SEGV------------ 342 (424)
T ss_pred CCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCc-cccc------------
Confidence 00111112211 111 112111 1234455667888888999988774 46665431 0010
Q ss_pred CcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013210 347 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 426 (447)
Q Consensus 347 g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~ 426 (447)
..+++++|.+++.. ...+.+.|... +| |.++.|..|.. .....+|+ ++.||+|++ ..+++
T Consensus 343 ~r~~~v~~~~~~~~-~~~v~~~L~~~--~g-I~v~~g~~c~~--------------~~~~~~g~-~~~iRiS~~-~ynt~ 402 (424)
T PLN02855 343 GRAALCAFNVEGIH-PTDLSTFLDQQ--HG-VAIRSGHHCAQ--------------PLHRYLGV-NASARASLY-FYNTK 402 (424)
T ss_pred CcccEEEEEECCcC-HHHHHHHhccc--CC-EEEechhhhhH--------------HHHHHhCC-CCeEEEEec-cCCCH
Confidence 13569999987533 45677777652 24 56777744321 11133454 378999999 99999
Q ss_pred HHHHHHHHHHHHhhh
Q 013210 427 QRWSQFEKALSRMQD 441 (447)
Q Consensus 427 ~~i~~l~~al~~~~~ 441 (447)
++++.|.++|+++..
T Consensus 403 ~di~~l~~~l~~~~~ 417 (424)
T PLN02855 403 EEVDAFIHALKDTIA 417 (424)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=255.65 Aligned_cols=334 Identities=16% Similarity=0.188 Sum_probs=235.3
Q ss_pred ccccCCH-HHHHHhhcCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHh----cCC
Q 013210 67 TFTVMEP-ETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQL----CSS 137 (447)
Q Consensus 67 t~~~~~~-~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l----~~~ 137 (447)
+++.+.+ +.+.+.++..++||.+ .+.+++......+++++.+|+++|++ .+++|+|+++++++++.++ +++
T Consensus 28 ~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~ 107 (403)
T TIGR01979 28 SQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKA 107 (403)
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCC
Confidence 3433344 7777777777777764 45555555566789999999999975 5999999999999988875 578
Q ss_pred CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHH
Q 013210 138 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212 (447)
Q Consensus 138 gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la 212 (447)
||+|++++++|++....+...... .|.+++.++.+ |++++++++ +++|++|++++++|+||.+.|+++|.++|
T Consensus 108 g~~vl~~~~~~~s~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~l~~~i-~~~~~lv~~~~~~~~tG~~~~~~~i~~~~ 185 (403)
T TIGR01979 108 GDEIVISEMEHHANIVPWQLLAER-TGATLKFIPLDDDGTLDLDDLEKLL-TEKTKLVAITHVSNVLGTVNPVEEIAKLA 185 (403)
T ss_pred CCEEEECcchhhHHHHHHHHHHHh-cCcEEEEEecCCCCCCCHHHHHHHh-ccCCeEEEEEcccccccccCCHHHHHHHH
Confidence 999999999999877666444433 68888888754 789999999 78899999999999999999999999999
Q ss_pred HhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh--------------
Q 013210 213 HDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA-------------- 276 (447)
Q Consensus 213 ~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-------------- 276 (447)
+++|+++|+|++| +....+...+++|+++.|+||++|++| + |+++.++++++.+.....++
T Consensus 186 ~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G--~-g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 262 (403)
T TIGR01979 186 HQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTG--I-GVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYN 262 (403)
T ss_pred HHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCC--c-eEEEEchHHHhcCCCeecCCCceeecccCccccC
Confidence 9999999999999 334455566789999999999998777 4 89988888776653221100
Q ss_pred ---hhhcCCCccHH--HH-HHHHccCC--cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCC
Q 013210 277 ---LMLLGPTMNPK--VA-FELSERIP--HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 277 ---~~~~g~~~~~~--~a-~~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
.....++++.. .+ ..++..+. .+....++..++++++.+.|++++ .++..|..+. .
T Consensus 263 ~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~---------------~ 327 (403)
T TIGR01979 263 EAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAE---------------D 327 (403)
T ss_pred CChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcc---------------c
Confidence 00111122221 11 11221111 234455677888888999888774 4666543110 1
Q ss_pred cCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013210 348 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 427 (447)
Q Consensus 348 ~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 427 (447)
.++++.|.+++.. ...+.+.|... | +.++.|..++. .....+|. ++.+|||+| ..++++
T Consensus 328 ~~~~v~~~~~~~~-~~~~~~~L~~~---g-I~v~~g~~~~~--------------~~~~~~~~-~~~iRiS~~-~~~t~~ 386 (403)
T TIGR01979 328 RGGIISFNVEGVH-PHDVGTILDEE---G-IAVRSGHHCAQ--------------PLMRRFGV-PATCRASFY-IYNTEE 386 (403)
T ss_pred cCceEEEEeCCcC-HHHHHHHHhhC---C-EEEcchhhhhH--------------HHHHHhCC-CCEEEEEec-cCCCHH
Confidence 3568999987532 45566677653 3 56676643221 12223343 478999999 989999
Q ss_pred HHHHHHHHHHHhhh
Q 013210 428 RWSQFEKALSRMQD 441 (447)
Q Consensus 428 ~i~~l~~al~~~~~ 441 (447)
+++.|.++|+++.+
T Consensus 387 di~~l~~~l~~~~~ 400 (403)
T TIGR01979 387 DIDALVEALKKVRK 400 (403)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=251.08 Aligned_cols=330 Identities=18% Similarity=0.204 Sum_probs=234.6
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcC--
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCS-- 136 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~-- 136 (447)
.+++++.+.+ +.+.+.+...++||.+ .|.++........++++.+++++|.+ .+++|+|+++|++.++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~ 85 (373)
T cd06453 6 AATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRAN 85 (373)
T ss_pred ccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcC
Confidence 3444554555 7787888777788754 55666555566788999999999976 699999999999999999877
Q ss_pred -CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHH
Q 013210 137 -SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210 (447)
Q Consensus 137 -~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~ 210 (447)
+|++|+++.++|++....+...... .|.++++++.+ |++++++.+ ++++++|++++++||||.+.|+++|.+
T Consensus 86 ~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~~~tG~~~~~~~i~~ 163 (373)
T cd06453 86 KPGDEIVTSVMEHHSNIVPWQQLAER-TGAKLKVVPVDDDGQLDLEALEKLL-TERTKLVAVTHVSNVLGTINPVKEIGE 163 (373)
T ss_pred CCCCEEEECcchhHHHHHHHHHHHhh-cCcEEEEeecCCCCCcCHHHHHHHh-cCCceEEEEeCcccccCCcCCHHHHHH
Confidence 8999999999999876555444333 68888888765 899999999 678999999999999999999999999
Q ss_pred HHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh-----------
Q 013210 211 LAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL----------- 277 (447)
Q Consensus 211 la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~----------- 277 (447)
+|+++|+++|+|++++ ....+...+++|++++|++|+++++| + |+++.++++++.+.....+..
T Consensus 164 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g--~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 240 (373)
T cd06453 164 IAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTG--I-GVLYGKEELLEEMPPYGGGGEMIEEVSFEETT 240 (373)
T ss_pred HHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCC--c-EEEEEchHHhhcCCCeecCCCccccccccccc
Confidence 9999999999999983 23344456689999999999999755 4 899888888876654321100
Q ss_pred ------hhcCCCccH---HHHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccC
Q 013210 278 ------MLLGPTMNP---KVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKE 345 (447)
Q Consensus 278 ------~~~g~~~~~---~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~ 345 (447)
.....++.. .+...++..+ ..+..+.++..++++++.+.|++++ .++..+. .
T Consensus 241 ~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~--------------- 304 (373)
T cd06453 241 YADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDA-E--------------- 304 (373)
T ss_pred cCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCc-c---------------
Confidence 001112221 1111122211 2345566677888899999998875 3554221 0
Q ss_pred CCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH
Q 013210 346 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 425 (447)
Q Consensus 346 ~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~ 425 (447)
..+++++|.+++. ...++.+.|... | +.++.|+.++. .....+|. .+.||+|+| ..++
T Consensus 305 -~~~~~~~~~~~~~-~~~~i~~~l~~~---g-i~i~~g~~~~~--------------~~~~~~~~-~~~iRis~~-~~~t 362 (373)
T cd06453 305 -DRAGVVSFNLEGI-HPHDVATILDQY---G-IAVRAGHHCAQ--------------PLMRRLGV-PGTVRASFG-LYNT 362 (373)
T ss_pred -ccCCeEEEEECCc-CHHHHHHHHHHC---C-EEeccCccchh--------------HHHHHhCC-CCeEEEEec-CCCC
Confidence 1345889988753 345677777653 3 45555533211 11222343 478999999 9999
Q ss_pred HHHHHHHHHHH
Q 013210 426 DQRWSQFEKAL 436 (447)
Q Consensus 426 ~~~i~~l~~al 436 (447)
+++++.|.++|
T Consensus 363 ~~di~~~~~~l 373 (373)
T cd06453 363 EEEIDALVEAL 373 (373)
T ss_pred HHHHHHHHhhC
Confidence 99999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=247.39 Aligned_cols=244 Identities=14% Similarity=0.149 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhC--------C-CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALEG--------T-EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~-~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
...+++.||++++ . +.+++|+|+++|+.+++.+++++||.|+++.|+|+.+...+. ..|.++..++
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~-----~~G~~~~~v~ 145 (399)
T PRK07681 71 IQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQ-----MAGATSYYMP 145 (399)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHH-----hcCCEEEEEe
Confidence 4568888888763 2 469999999999999999999999999999999999887763 2688887776
Q ss_pred CC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cC-
Q 013210 172 IS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR- 234 (447)
Q Consensus 172 ~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~- 234 (447)
.+ |++++++++ .+++++|++++||||||.+.+ +++|+++|+++|+++|+|++|..+.++. ..
T Consensus 146 ~~~~~~~~~d~~~l~~~~-~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~ 224 (399)
T PRK07681 146 LKKENDFLPDLELIPEEI-ADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSV 224 (399)
T ss_pred cCCCCCCcCCHHHHHHhc-cccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhC
Confidence 53 688898888 678999999999999999998 6788899999999999999996654321 11
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 310 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 310 (447)
...++++.|+||.+|.+|.|+ ||+++++++++.+....... ....+.+.+.++...+... +++....+.+.+++
T Consensus 225 ~~~~~~~i~~~S~SK~~~~~GlRi-G~~i~~~~l~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 302 (399)
T PRK07681 225 PGAKEVGVEINSLSKSYSLAGSRI-GYMIGNEEIVRALTQFKSNT-DYGVFLPIQKAACAALRNGAAFCEKNRGIYQERR 302 (399)
T ss_pred CCCcccEEEEeecccccCCcccee-EEEecCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 135789999999999999999 99999999998887665411 1222333444444444432 34555666778889
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
+.+.+.|++++.++..|. .|.++|+.++.......+...+..
T Consensus 303 ~~l~~~L~~~g~~~~~p~-------------------~g~f~~~~l~~~~~~~~~~~~l~~ 344 (399)
T PRK07681 303 DTLVDGFRTFGWNVDKPA-------------------GSMFVWAEIPKGWTSLSFAYALMD 344 (399)
T ss_pred HHHHHHHHHCCCcccCCC-------------------eeeEEEEECCCCCCHHHHHHHHHH
Confidence 999999998765544332 466889998743234566666543
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=249.03 Aligned_cols=328 Identities=18% Similarity=0.206 Sum_probs=236.6
Q ss_pred cccccccCCH-HHHHHhhcCCCCCC-CCCccccCCCCchHHHHHHHHHHHhCCCe---EEEeCChHHHHHHHHHHh---c
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPD-RDFFIYSRHFNPTVLNLSRQMAALEGTEA---AYCTASGMSAISSVLMQL---C 135 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~l~~~ia~l~g~~~---~~~tsggt~A~~~al~~l---~ 135 (447)
++++++.+.+ +.+.+.+...++|| ++.+.+++.....++++++.+|+++|++. ++|++|+|++++.++.++ +
T Consensus 6 ~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~ 85 (371)
T PF00266_consen 6 AGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPL 85 (371)
T ss_dssp SSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccc
Confidence 4566665566 88888888888887 34555666667788999999999999865 899999999999999998 7
Q ss_pred CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHH
Q 013210 136 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210 (447)
Q Consensus 136 ~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~ 210 (447)
++|++|+++..+|++....+.....+ .|.++++++.+ |++++++++ ++++++|++.++.|.+|.+.|+++|.+
T Consensus 86 ~~g~~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~i~~~~~~~~~~~~~~~~l-~~~~~lv~~~~~~~~tG~~~pi~~I~~ 163 (371)
T PF00266_consen 86 KPGDEVLVTSNEHPSNRYPWEEIAKR-KGAEVRVIPADPGGSLDLEDLEEAL-NPDTRLVSISHVENSTGVRNPIEEIAK 163 (371)
T ss_dssp TTTCEEEEEESSHHHHHHHHHHHHHH-TTEEEEEEEEGTTSSCSHHHHHHHH-HTTESEEEEESBETTTTBBSSHHHHHH
T ss_pred cccccccccccccccccccccccccc-chhhhccccccccchhhhhhhhhhh-ccccceEEeecccccccEEeeeceehh
Confidence 89999999999999999777655544 68888887653 899999999 799999999999999999999999999
Q ss_pred HHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh------------
Q 013210 211 LAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA------------ 276 (447)
Q Consensus 211 la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~------------ 276 (447)
+||++|+++++|.++ +...++..++++|++++|.+|++|++| + |+++.+++.+++++....+.
T Consensus 164 ~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G--~-g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~ 240 (371)
T PF00266_consen 164 LAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPG--L-GFLYVRPEAIERLRPAKPGGGYLDFPSLQEYG 240 (371)
T ss_dssp HHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSST--E-EEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHC
T ss_pred hhhccCCceeEechhccccccccccccccceeeecccccCCCCc--h-hhheehhhhhhccccccccccccccccchhcc
Confidence 999999999999998 556678888899999999999767666 4 99999998888774321110
Q ss_pred -----hhhcCCCccHHHHHH---HHccCC--cHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccC
Q 013210 277 -----LMLLGPTMNPKVAFE---LSERIP--HLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKE 345 (447)
Q Consensus 277 -----~~~~g~~~~~~~a~~---~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~ 345 (447)
....+++++...... ++..+. .+....++..++.+++.+.|.+.+. .+..|... +
T Consensus 241 ~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~--~------------ 306 (371)
T PF00266_consen 241 LADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDE--P------------ 306 (371)
T ss_dssp HHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCG--G------------
T ss_pred cccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeeccc--c------------
Confidence 111222333322221 222111 1334456678888999999999877 55443211 1
Q ss_pred CCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH
Q 013210 346 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 425 (447)
Q Consensus 346 ~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~ 425 (447)
..+++++|.+++.+ ...+...|...+ |.++.|..+.. +......+ .+.||+|++ ..++
T Consensus 307 -~~~~i~~~~~~~~~-~~~~~~~L~~~~----I~~~~G~~~~~------------~~~~~~~~---~~~iRvS~~-~~nt 364 (371)
T PF00266_consen 307 -RRPSIVSFNLPGSD-ADDVVKYLEERG----IAVSTGSACAG------------PSLDILGM---GGVIRVSLH-YYNT 364 (371)
T ss_dssp -BGTTEEEEEETTSS-HHHHHHHHHHHT----EEEEESTTTCH------------HHHHHHHT---TTEEEEE-G-TTSS
T ss_pred -cccceEEEeecCCC-HHHHHHHHhhcC----EEEeccCcccH------------HHHHHhCC---CCEEEEecc-CCCC
Confidence 35679999997543 456666666533 67777744331 11112222 289999999 9999
Q ss_pred HHHHHHH
Q 013210 426 DQRWSQF 432 (447)
Q Consensus 426 ~~~i~~l 432 (447)
+++|+.|
T Consensus 365 ~~dv~~l 371 (371)
T PF00266_consen 365 EEDVDRL 371 (371)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=244.38 Aligned_cols=311 Identities=15% Similarity=0.170 Sum_probs=219.8
Q ss_pred HHHHHhhcCCCCCC--CCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhH
Q 013210 74 ETMRRMFAGELGPD--RDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT 151 (447)
Q Consensus 74 ~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~ 151 (447)
+.+.+.+.....++ ++.|.. +.+...++++++|+++|.+.+++|+||++|+..+++++..+||+|+++.+.|.+.
T Consensus 75 ~a~~~~~~~~~~~~~~s~~~~~---~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~ 151 (407)
T PRK07179 75 KAQIAALQEEGDSLVMSAVFLH---DDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSL 151 (407)
T ss_pred HHHHHHHHHhCCCCCccccccC---CchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHH
Confidence 55555555443333 233322 2346689999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-
Q 013210 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL- 230 (447)
Q Consensus 152 ~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~- 230 (447)
...+. ..|.++..++..|+++|++++++.++++|++++++||+|.++|+++|.++|+++|+++|+|++|+....
T Consensus 152 ~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g 226 (407)
T PRK07179 152 WEGVR-----AAGAQAHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHG 226 (407)
T ss_pred HHHHH-----HCCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcC
Confidence 76552 257777777778999999999333588999999999999999999999999999999999999942111
Q ss_pred -C------ccC--CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHH--HHH-HHHccCCc
Q 013210 231 -S------PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK--VAF-ELSERIPH 298 (447)
Q Consensus 231 -~------~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~--~a~-~~~~~~~~ 298 (447)
. ... .++|+++.|+||++|++ + |++++++++++.+....... ..+++..+. ++. .++..+..
T Consensus 227 ~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~---~-G~l~~~~~~~~~~~~~~~~~--~~~~t~~~~~~aa~~aal~~~~~ 300 (407)
T PRK07179 227 PQGAGLVAELGLTSRVHFITASLAKAFAGR---A-GIITCPRELAEYVPFVSYPA--IFSSTLLPHEIAGLEATLEVIES 300 (407)
T ss_pred CCCCchHHhcCCCCCCCEEEeechHhhhcc---C-eEEEeCHHHHHHHHHhCcCe--eeCCCCCHHHHHHHHHHHHHHhc
Confidence 1 111 14689999999999853 4 99999988877765443211 122222222 221 22333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013210 299 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM 378 (447)
Q Consensus 299 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~ 378 (447)
...+.+++.++++++.+.|++++.++. +.+.++++.++.......+.+.|... |+
T Consensus 301 ~~~~~~~l~~~~~~l~~~L~~~g~~v~---------------------~~~~i~~l~~~~~~~~~~~~~~L~~~---GI- 355 (407)
T PRK07179 301 ADDRRARLHANARFLREGLSELGYNIR---------------------SESQIIALETGSERNTEVLRDALEER---NV- 355 (407)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCC---------------------CCCCEEEEEeCCHHHHHHHHHHHHHC---Cc-
Confidence 345677889999999999988765433 12458899887544466777777653 32
Q ss_pred cccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcCC
Q 013210 379 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGV 444 (447)
Q Consensus 379 ~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~~ 444 (447)
.++ .++.|... ...+.||||++ ..++++.++.+.++|+++.+...
T Consensus 356 ~~~------~~~~p~~~--------------~~~~~lRis~~-~~~t~edi~~~~~~l~~~~~~~~ 400 (407)
T PRK07179 356 FGA------VFCAPATP--------------KNRNLIRLSLN-ADLTASDLDRVLEVCREARDEVD 400 (407)
T ss_pred eEe------eecCCCCC--------------CCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHhhC
Confidence 211 11112110 12478999999 88999999999999988766544
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=242.03 Aligned_cols=242 Identities=17% Similarity=0.175 Sum_probs=182.0
Q ss_pred HHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----
Q 013210 102 LNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----- 173 (447)
Q Consensus 102 ~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----- 173 (447)
.++|+.||++++ .+.+++|+|+++|+.+++.+++.+||+|+++.|.|..+...+. ..|.+++.++.+
T Consensus 65 ~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~~~ 139 (373)
T PRK07324 65 PEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYDIPE-----SLGAEVDYWQLKEENGW 139 (373)
T ss_pred HHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEecccccCC
Confidence 579999999874 3569999999999999999999999999999999998876653 267788777652
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cC-CCCeEEEe
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR-LGADVVVH 242 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~~-~g~di~~~ 242 (447)
|++++++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+.+.. .. .+..+++.
T Consensus 140 ~~d~~~l~~~~-~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~ 218 (373)
T PRK07324 140 LPDLDELRRLV-RPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTN 218 (373)
T ss_pred CCCHHHHHHhC-CCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEe
Confidence 788998888 778999999999999999998 8899999999999999999996654432 11 14568899
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc-HHHHHHHHHHHHHHHHHHHHhCC
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
|+||.+|.+|.|+ ||+++++++++.+...+... ....+.+.+..+..++...+. +....+.+.++++.+.+.|++++
T Consensus 219 s~SK~~~~~G~Ri-G~i~~~~~li~~~~~~~~~~-~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 296 (373)
T PRK07324 219 SMSKTYSLPGIRV-GWIAANEEVIDILRKYRDYT-MICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEP 296 (373)
T ss_pred cchhhcCCcccee-EEEecCHHHHHHHHHHhCcE-EecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999 99999999999998876521 223344455555555443322 33344556778888888888764
Q ss_pred C-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013210 322 L-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 370 (447)
Q Consensus 322 ~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~ 370 (447)
. .+..|. .|.++++.++.......|.++|.
T Consensus 297 ~~~~~~p~-------------------gg~~~~i~~~~~~~~~~~~~~ll 327 (373)
T PRK07324 297 RVSYVKPK-------------------AVSTSFVKLDVDMPSEDFCLKLL 327 (373)
T ss_pred CceEECCC-------------------ceEEEEEEeCCCCCHHHHHHHHH
Confidence 3 444442 34456666653223456766653
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=247.73 Aligned_cols=320 Identities=17% Similarity=0.167 Sum_probs=228.2
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcC---
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCS--- 136 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~--- 136 (447)
++++++.+.+ +.+.+++...++||.+ .+.+++......+++++.+|+++|++ .++||+|+++|++.++.++..
T Consensus 5 a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~ 84 (353)
T TIGR03235 5 NATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGE 84 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4566665666 7777777666677765 45666655566789999999999974 599999999999999988753
Q ss_pred -CC-CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHH
Q 013210 137 -SG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 209 (447)
Q Consensus 137 -~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~ 209 (447)
+| ++|+++..+|+++...+... .. .|++++.++.+ |+++|++++ ++++++|++++++||||.+.|+++|.
T Consensus 85 ~~g~~~vi~~~~~~~s~~~~~~~~-~~-~G~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~~~~~~n~tG~~~~~~~I~ 161 (353)
T TIGR03235 85 QKGKKHIITSAIEHPAVLEPIRAL-ER-NGFTVTYLPVDESGRIDVDELADAI-RPDTLLVSIMHVNNETGSIQPIREIA 161 (353)
T ss_pred cCCCCeeeEcccccHHHHHHHHHH-Hh-cCCEEEEEccCCCCcCCHHHHHHhC-CCCCEEEEEEcccCCceeccCHHHHH
Confidence 55 78999999999887776433 33 58888888754 889999999 77899999999999999999999999
Q ss_pred HHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHH--HHHHhhh----hhhhcC
Q 013210 210 RLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS--MMDLHQG----ALMLLG 281 (447)
Q Consensus 210 ~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~--l~~~~~~----~~~~~g 281 (447)
++|+++|+++|+|++| +...++....++|+++.|+||++|++| + |+++.+++.... +.....+ .....|
T Consensus 162 ~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g--~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 238 (353)
T TIGR03235 162 EVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKG--I-GALVIRKRGKPKAPLKPIMFGGGQERGLRPG 238 (353)
T ss_pred HHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCc--e-EEEEEccCcccccccCceeeCCCCcCccccC
Confidence 9999999999999997 555666667789999999999998776 4 787776654321 1111000 000122
Q ss_pred CC-ccHHHHHH-HHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 282 PT-MNPKVAFE-LSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 282 ~~-~~~~~a~~-~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
+. .....+.. ++.. ......+.+++.++++++.+.|++.+.++..+.-.. ..++++|.+++
T Consensus 239 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~----------------~~~i~~~~~~~ 302 (353)
T TIGR03235 239 TLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAET----------------IPHILNFSIDG 302 (353)
T ss_pred CCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccc----------------cCCEEEEEeCC
Confidence 21 11111111 1111 123456677888999999999987666665432111 23488888875
Q ss_pred HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCC----CeEEEEe
Q 013210 359 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA----GLVRMSV 419 (447)
Q Consensus 359 ~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~----~~iRiS~ 419 (447)
.+ .+.+...|.. + ++++.| ..|......+++.+.++|+++ +.||+|+
T Consensus 303 ~~-~~~v~~~L~~-~----i~v~~g--------~~~~~~~~~~~~~l~~~g~~~~~~~~~~r~s~ 353 (353)
T TIGR03235 303 VN-SEALIVNLRA-D----AAVSTG--------SACSSSKYEPSHVLQAMGLDTDRARGAIRFSW 353 (353)
T ss_pred cC-HHHHHHHHhC-C----eEEEch--------hhcCCCCCCCCHHHHHcCCCHHHhCccEEEeC
Confidence 43 4566677753 2 688888 445554555678999999975 8899996
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=241.77 Aligned_cols=288 Identities=15% Similarity=0.201 Sum_probs=204.6
Q ss_pred CchHHHHHHHHHHHhCC-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 98 NPTVLNLSRQMAALEGT-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+.++.+++.+++..|. +.+++|+|+++++..++.+++.+||+|+++.|.|..+...+. ..|+++.+++.
T Consensus 68 ~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~ 142 (389)
T PRK05957 68 PPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAIT-----MAGCQPILVPT 142 (389)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHH-----hcCCEEEEeec
Confidence 35567777888877774 358999999999999999989999999999999988765542 26888888765
Q ss_pred C-----CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------c----C
Q 013210 173 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A----R 234 (447)
Q Consensus 173 ~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~----~ 234 (447)
+ |++++++++ ++++++|++.+|+||||.+++ +++|+++|+++|+++++|++|..+.++. . .
T Consensus 143 ~~~~~~d~~~l~~~i-~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~ 221 (389)
T PRK05957 143 DDNYQLQPEAIEQAI-TPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGS 221 (389)
T ss_pred CCCCCcCHHHHHHhc-CcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCc
Confidence 4 789999999 778999999999999999997 8889999999999999999996554321 1 1
Q ss_pred CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHHHHHHH
Q 013210 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIF 313 (447)
Q Consensus 235 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~~~l 313 (447)
....+++.|+||.+|.+|.|+ ||++.++++++.+....... ....+...+..+...+.. ...+.+..+++.++++.+
T Consensus 222 ~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l 299 (389)
T PRK05957 222 GNHTISLYSLSKAYGFASWRI-GYMVIPIHLLEAIKKIQDTI-LICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQIL 299 (389)
T ss_pred cCcEEEEecchhhccCcccee-EEEecCHHHHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 135699999999999999999 99999999999888765411 112223344444444433 234555667788999999
Q ss_pred HHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccc
Q 013210 314 ARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 314 ~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~ 391 (447)
.+.|++++. .+..| ..|.++|+.++...+...+.+.|.. +.| +.+..|..+
T Consensus 300 ~~~L~~~~~~~~~~~~-------------------~gg~~~~~~~~~~~~~~~~~~~l~~--~~g-v~v~pg~~f----- 352 (389)
T PRK05957 300 LKSLGQLQDRCTLHPA-------------------NGAFYCFLKVNTDLNDFELVKQLIR--EYR-VAVIPGTTF----- 352 (389)
T ss_pred HHHHHhcCCCccccCC-------------------CeeEEEEEeCCCCCChHHHHHHHHH--HCC-EEEccchhh-----
Confidence 999987643 22211 2456888888743335567777642 123 455555221
Q ss_pred cccccCCCCCHHHHHhcCC-CCCeEEEEeCCCCCHHHH---HHHHHHHHHH
Q 013210 392 SGSSTSSELNAEEKALAGI-SAGLVRMSVGYLGTLDQR---WSQFEKALSR 438 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~-~~~~iRiS~g~~~~~~~~---i~~l~~al~~ 438 (447)
+. .++++|||+| ..+.+++ ++.|.+.+++
T Consensus 353 -----------------~~~~~~~iRis~~-~~~~~~l~~~~~~l~~~~~~ 385 (389)
T PRK05957 353 -----------------GMKNGCYLRIAYG-ALQKATAKEGIERLVQGLKT 385 (389)
T ss_pred -----------------CCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence 11 1468999999 6555443 4444444433
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=244.64 Aligned_cols=284 Identities=17% Similarity=0.184 Sum_probs=204.7
Q ss_pred hHHHHHHHHHHHh----C-----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 100 TVLNLSRQMAALE----G-----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 100 ~~~~l~~~ia~l~----g-----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
....+++.+|+++ | .+ .+++|+|+++++..++.+++++||.|+++.|.|+.+...+. ..|.++..
T Consensus 82 G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~v~~ 156 (410)
T PRK06290 82 GIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTK-----YYGGEVYN 156 (410)
T ss_pred CcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHH-----HcCCEEEE
Confidence 3467888888874 3 23 59999999999999999999999999999999999877763 25777777
Q ss_pred eCCC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccC
Q 013210 170 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR 234 (447)
Q Consensus 170 v~~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~ 234 (447)
++.+ |++++++.+ .+++++|++++||||||.+.+ +++|.++|++||++||+||+|..+.++ ...
T Consensus 157 v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~ 235 (410)
T PRK06290 157 LPLLEENNFLPDLDSIPKDI-KEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLS 235 (410)
T ss_pred EecCCCcCCcCCHHHHHHhh-cccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhc
Confidence 7653 788888888 678999999999999999998 578888899999999999999655332 111
Q ss_pred ----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCC-CccHHHHHHHHccCCcHHHHHHHHHHH
Q 013210 235 ----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP-TMNPKVAFELSERIPHLGLRMKEHCHR 309 (447)
Q Consensus 235 ----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~-~~~~~~a~~~~~~~~~l~~~~~~~~~~ 309 (447)
.+.++++.|+||.+|.+|.|+ ||+++++++++.+....... ..+. .+.+.++..++...+.+....+++.++
T Consensus 236 ~~~~~~~~I~i~SfSK~~g~~GlRi-G~ii~~~~l~~~l~~~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 312 (410)
T PRK06290 236 VPGAKEVGVEIHSLSKAYNMTGWRL-AFVVGNELIVKAFATVKDNN--DSGQFIAIQKAGIYALDHPEITEKIREKYSRR 312 (410)
T ss_pred CCCccccEEEEeechhhcCCchhhe-EeEEeCHHHHHHHHHHHhcc--ccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 246799999999999999999 99999999998887665421 1222 234444444554434455566778899
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-------HHHHHHHHHhhcccccccccccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-------EKANRLMNYLQNYAQFGFMAVSL 382 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-------~~~~~l~~~l~~~~~~g~~~vs~ 382 (447)
++.+.+.|++.+..+..|. .|.++|+.++.. .+...+.+.|...+ + +.+-
T Consensus 313 ~~~l~~~L~~~g~~~~~p~-------------------g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~--~-v~~~- 369 (410)
T PRK06290 313 LDKLVKILNEVGFKAEMPG-------------------GTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEK--L-ISTV- 369 (410)
T ss_pred HHHHHHHHHhCCCeecCCC-------------------eeeEEEEECCCccccCCCCCCHHHHHHHHHHhC--C-EEEE-
Confidence 9999999998876544332 345778888632 13567777776522 1 2211
Q ss_pred cCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC----CCCHHHHHHHHHHHHHHh
Q 013210 383 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY----LGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 383 G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~----~~~~~~~i~~l~~al~~~ 439 (447)
|... ..+++||+++. .++.+++++.|.++|..+
T Consensus 370 ---------p~~~---------------~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 370 ---------PWDD---------------AGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred ---------CCcc---------------ccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 1110 12689999982 355555666666666544
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-28 Score=243.15 Aligned_cols=242 Identities=19% Similarity=0.213 Sum_probs=177.8
Q ss_pred HHHHHHHHHHhCC-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 102 LNLSRQMAALEGT-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 102 ~~l~~~ia~l~g~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
+.+.+.+++..|. +.+++|+|+++++.+++.+++.+||+|++..|+|+.+...+. ..|.++..++.+
T Consensus 85 ~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-----~~g~~v~~v~~~~~~ 159 (405)
T PRK06207 85 ELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVE-----FFEGEMVPVQLDYLS 159 (405)
T ss_pred HHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEeccccC
Confidence 3444444544463 569999999999999999999999999999999999887763 256666655432
Q ss_pred -------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------cc----
Q 013210 174 -------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PA---- 233 (447)
Q Consensus 174 -------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~---- 233 (447)
|+++|++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+||+|..+.++ ..
T Consensus 160 ~~~~~~~d~~~l~~~~-~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ 238 (405)
T PRK06207 160 ADKRAGLDLDQLEEAF-KAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPI 238 (405)
T ss_pred cccCCCcCHHHHHHhh-hhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCC
Confidence 789999988 678999999999999999997 678889999999999999999765432 11
Q ss_pred CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHHH
Q 013210 234 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALI 312 (447)
Q Consensus 234 ~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~ 312 (447)
..+..+++.|+||.++.+|.|+ ||+++++++++.+...+... ....+.+.+.++..++... .++..+++++.++++.
T Consensus 239 ~~~~vi~i~SfSK~~~lpGlRi-G~ii~~~~l~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~ 316 (405)
T PRK06207 239 DPENVITIMGPSKTESLSGYRL-GVAFGSPAIIDRMEKLQAIV-SLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDD 316 (405)
T ss_pred CcCcEEEEecchhhccCcccce-EEEEcCHHHHHHHHHHHhHh-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 1245699999999999999999 99999999999887765521 1112223344444444322 3456677778888888
Q ss_pred HHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh
Q 013210 313 FARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ 370 (447)
Q Consensus 313 l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~ 370 (447)
+.+.|+++ +..+..|. .|.++|+.++.. .+...+.+.|.
T Consensus 317 l~~~L~~~~~~~~~~p~-------------------gg~fl~~~l~~~~~~~~~~~~~l~ 357 (405)
T PRK06207 317 LLRVLRGVEGVFVRAPQ-------------------AGSYLFPRLPRLAVSLHDFVKILR 357 (405)
T ss_pred HHHHHhcCCCceecCCC-------------------eeEEEEEeCcccCCCHHHHHHHHH
Confidence 99999876 33433232 466899998741 23456777764
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=241.37 Aligned_cols=258 Identities=17% Similarity=0.199 Sum_probs=194.4
Q ss_pred ccccccccccCCHHHHHHhhcCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCC
Q 013210 61 SIEASATFTVMEPETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGG 139 (447)
Q Consensus 61 pi~~att~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd 139 (447)
||.+-........+++.+++. .++||++ .|.+++...+.++++|+.+|+++|++++++|+|+++|+.+++.+++++||
T Consensus 25 ~~~~~~p~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~~gd 103 (387)
T PRK09331 25 PIQRGGILTPEARKALIEYGD-GYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCKKGD 103 (387)
T ss_pred hhhcCCCCCHHHHHHHHHHHh-ccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcCCCC
Confidence 444443333223488888774 4578777 78888888899999999999999999999999999999999999999999
Q ss_pred eEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-------CCHHHHHHhhcc------CCceEEEEEcCCCCCccccCHH
Q 013210 140 HVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ------GRTKVLYFESISNPTLAVANIP 206 (447)
Q Consensus 140 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i~~------~~t~lV~i~~~~NptG~v~~l~ 206 (447)
+|+++.++|.+....+. ..|+++.+++. .|++++++++++ +++++|++++|+|++|.+.|++
T Consensus 104 ~Vlv~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~ 178 (387)
T PRK09331 104 YVVLDGLAHYTSYVAAE-----RAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAK 178 (387)
T ss_pred EEEECCCchHHHHHHHH-----HcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHH
Confidence 99999999988876542 26888888876 279999998842 3789999999999999999999
Q ss_pred HHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh----hhc
Q 013210 207 ELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL----MLL 280 (447)
Q Consensus 207 ~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~----~~~ 280 (447)
+|.++|+++|+++|+|++| +.++++...+++|+++.|+||++++++ ++ |++++++++++.+........ ...
T Consensus 179 ~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~-~~-G~l~~~~~~i~~~~~~~~~~~~~~~~~~ 256 (387)
T PRK09331 179 KVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASA-PS-GVLATTEEYADKVFRTSRKFGVKEVELL 256 (387)
T ss_pred HHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCC-CE-EEEEECHHHHhhcccccCCCcccceeee
Confidence 9999999999999999999 334566667799999999999998654 45 899999988887654322110 012
Q ss_pred CCCcc--HHHH-HHHHccCCcHHHHHHHHHHHHHHHHHHHHhC-CCeeeC
Q 013210 281 GPTMN--PKVA-FELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVLY 326 (447)
Q Consensus 281 g~~~~--~~~a-~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~ 326 (447)
+.+.. +..+ ...+..+.....+.+++.++++++.+.|+++ ++++..
T Consensus 257 ~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~~~~ 306 (387)
T PRK09331 257 GCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFKQLG 306 (387)
T ss_pred ceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence 22222 2221 1122122222234566677888999999998 666653
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-28 Score=240.09 Aligned_cols=219 Identities=18% Similarity=0.219 Sum_probs=166.8
Q ss_pred chHHHHHHHHHHHhCC-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 99 PTVLNLSRQMAALEGT-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
...+.+++.++++.|. +++++|+|+++|+..++++++.+||+|+++.|+|..+...+. ..|.++..++.+
T Consensus 70 ~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~ 144 (384)
T PRK12414 70 ALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVR-----LQGATPVAIKLS 144 (384)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHH-----HcCCEEEEEecC
Confidence 3345555555566675 359999999999999999999999999999999998877663 246666666543
Q ss_pred ------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cC----
Q 013210 174 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR---- 234 (447)
Q Consensus 174 ------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~---- 234 (447)
|+++|++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+.++. ..
T Consensus 145 ~~~~~~d~~~l~~~l-~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~ 223 (384)
T PRK12414 145 PEDFRVNWDEVAAAI-TPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHREL 223 (384)
T ss_pred ccccccCHHHHHhhc-CcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCc
Confidence 789999988 678999999999999999974 7788999999999999999996654321 11
Q ss_pred CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 013210 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFA 314 (447)
Q Consensus 235 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~ 314 (447)
.+..+++.|+||.+|.+|.|+ ||+++++++++.+....... ....+.+.+.++...+..........+.++++++.+.
T Consensus 224 ~~~~i~~~SfSK~~~~pGlRi-G~~v~~~~l~~~l~~~~~~~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~ 301 (384)
T PRK12414 224 AERSVIVSSFGKSYHVTGWRV-GYCLAPAELMDEIRKVHQFM-VFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLA 301 (384)
T ss_pred cCcEEEEecccccccCccceE-EEEecCHHHHHHHHHHHhhe-ecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 135799999999999999999 99999999998887765421 1334445555555555443334445566789999999
Q ss_pred HHHHhCCCeee
Q 013210 315 RRMKKLGLKVL 325 (447)
Q Consensus 315 ~~L~~~~~~v~ 325 (447)
+.|++++..+.
T Consensus 302 ~~L~~~g~~~~ 312 (384)
T PRK12414 302 RELAGSRFELL 312 (384)
T ss_pred HHHHhCCCeec
Confidence 99998765543
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=242.23 Aligned_cols=282 Identities=15% Similarity=0.146 Sum_probs=205.6
Q ss_pred CCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 97 FNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
..+...++++.||+++|.+ .+++|+|+++++.+++.+++++||+|+++.|.|+.+...+. ..|.++..++.+
T Consensus 84 p~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~-----~~g~~~~~v~~~~ 158 (380)
T PLN03026 84 PDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAA-----VNGAEVIKVPRTP 158 (380)
T ss_pred CCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEeecCC
Confidence 3444678999999999864 59999999999999999999999999999999987765552 257787777653
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc------cCCCCeEEEeC
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADVVVHS 243 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~------~~~g~di~~~S 243 (447)
|+++|+++++++++++|++++||||||.+.+.+++.++++.. +++|+||+|..+.... ...+..+++.|
T Consensus 159 ~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~S 237 (380)
T PLN03026 159 DFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRT 237 (380)
T ss_pred CCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEec
Confidence 788998887456899999999999999999999999999865 8999999996554321 12357899999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK 323 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 323 (447)
|||.+|.+|.|+ ||+++++++++.+...+.. ...+.+.+.++..++...+++....+++.++++++.+.|++++..
T Consensus 238 fSK~~glaGlRi-Gy~~~~~~~i~~l~~~~~~---~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 313 (380)
T PLN03026 238 FSKRAGLAGLRV-GYGAFPLSIIEYLWRAKQP---YNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFL 313 (380)
T ss_pred chHhhcCccccc-eeeecCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999 9999999999888776542 222333444444444433445556667888899999999987642
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHH
Q 013210 324 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403 (447)
Q Consensus 324 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~ 403 (447)
...|. .|.++++.++.......+.+.|... | +.+..+..
T Consensus 314 ~~~p~-------------------~~~f~~~~~~~~~~~~~~~~~l~~~---g-I~v~~~~~------------------ 352 (380)
T PLN03026 314 EPYPS-------------------DANFILCRVTSGRDAKKLKEDLAKM---G-VMVRHYNS------------------ 352 (380)
T ss_pred eECCC-------------------CCeEEEEECCCCCCHHHHHHHHHHC---C-eEEEECCC------------------
Confidence 22332 4568899887322345677776642 3 34433310
Q ss_pred HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 404 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 404 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+ .++++|||+| . .+..+.|.++|++
T Consensus 353 ----~~-~~~~lRis~~-~---~~~~~~l~~al~~ 378 (380)
T PLN03026 353 ----KE-LKGYIRVSVG-K---PEHTDALMEALKQ 378 (380)
T ss_pred ----CC-CCCEEEEecC-C---HHHHHHHHHHHHH
Confidence 01 1468999999 3 2345566666654
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-28 Score=238.89 Aligned_cols=292 Identities=15% Similarity=0.157 Sum_probs=196.1
Q ss_pred Cccc-cccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh
Q 013210 56 GGVN-MSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL 134 (447)
Q Consensus 56 ~~~~-~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l 134 (447)
|+++ .|++.+-+......+.+.++-.+.-+.+...........+...++++.+|+++|.+.+++++||++++..++.++
T Consensus 7 ~~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l 86 (370)
T TIGR02539 7 GSINLNPLQRGGVLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHAL 86 (370)
T ss_pred cccccChhhhCCCCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHh
Confidence 4555 466666655543345555443322100000112222335567889999999999999999999999999999999
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-------CHHHHHHhhcc------CCceEEEEEcCCCCCcc
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ------GRTKVLYFESISNPTLA 201 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~------~~t~lV~i~~~~NptG~ 201 (447)
+++||+|+++.+.|.+.+..+ +..|.++..++.+ |+++|++++.. +++++|++++|+||+|.
T Consensus 87 ~~~gd~Vl~~~~~h~s~~~~~-----~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~ 161 (370)
T TIGR02539 87 CKEGDWVVLDGLAHYTSYVAA-----ERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGN 161 (370)
T ss_pred hCCCCEEEECCcccHHHHHHH-----HHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCcc
Confidence 999999999999987776544 2368888888764 89999998832 36889999999999999
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCCCC--CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhh-
Q 013210 202 VANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM- 278 (447)
Q Consensus 202 v~~l~~I~~la~~~gi~livD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~- 278 (447)
+.|+++|.++|+++|+++|+|++|.. +..+....++|+++.|+||++++ +.++ |++++++++++.++.....+..
T Consensus 162 ~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~-~g~~-G~l~~~~~~i~~l~~~~~~~~~~ 239 (370)
T TIGR02539 162 LPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAA-SGPC-GVLGMSEEWEDIVLRKSRYSPVK 239 (370)
T ss_pred ccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccC-CCCE-EEEEECHHHHhhhcccccCCccc
Confidence 99999999999999999999999933 23344456789999999999996 4466 9999999999888765431111
Q ss_pred ---hcCCCc---cHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 279 ---LLGPTM---NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 279 ---~~g~~~---~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
..+.+. +..++..++.......++..+..++++++.+.|++.++++..+. + ..++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~----------------s~t~~v 302 (370)
T TIGR02539 240 EVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDIGFIQLGQK-P----------------KEHDLV 302 (370)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccC-C----------------CcCceE
Confidence 011111 12222222221111112233444556789999999887654221 1 123477
Q ss_pred EEEeCCH--------HHHHHHHHHhhc
Q 013210 353 CLDMETE--------EKANRLMNYLQN 371 (447)
Q Consensus 353 ~~~l~~~--------~~~~~l~~~l~~ 371 (447)
.+.++.. .....+.+.|..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~L~e 329 (370)
T TIGR02539 303 KFETPGFHEIAQKHKRRGYFLYEELKK 329 (370)
T ss_pred EEECCchhHHhhhhccccHHHHHHHHh
Confidence 7776532 123457777775
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-29 Score=233.37 Aligned_cols=232 Identities=23% Similarity=0.316 Sum_probs=181.8
Q ss_pred CCccccCCC--CchHHHHHHHHHHHhCC-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCc
Q 013210 89 DFFIYSRHF--NPTVLNLSRQMAALEGT-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR 161 (447)
Q Consensus 89 ~~~~~~r~~--~~~~~~l~~~ia~l~g~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~ 161 (447)
+.+.|+|.. .+.+..|++.++.++|. ++|++|+|+.+|+..++++++.+||+||+.+|.|.++.....
T Consensus 61 ~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~----- 135 (420)
T KOG0257|consen 61 STNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVV----- 135 (420)
T ss_pred hhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHh-----
Confidence 345555533 34566777888887663 459999999999999999999999999999999999998873
Q ss_pred ccCeeEEEeCCC-------------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCC
Q 013210 162 ACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 162 ~~g~~~~~v~~~-------------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~ 225 (447)
+.|..+++++.. |.++++.++ +++|++|++++||||||.+.+ |++|+++|++||+++|.|++|
T Consensus 136 maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~-t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevY 214 (420)
T KOG0257|consen 136 MAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKI-TEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVY 214 (420)
T ss_pred hcCCcceeeccccccccccCccccCChHHHHhhc-cCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHh
Confidence 356666665532 899999999 999999999999999999985 889999999999999999999
Q ss_pred CCCCCCccC----------CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc-
Q 013210 226 SPLVLSPAR----------LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE- 294 (447)
Q Consensus 226 ~~~~~~~~~----------~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~- 294 (447)
..+.+++.+ ....+-++|++|.+|..|+|+ ||+++++.++..+...++... ...+++.+.+...+..
T Consensus 215 e~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrl-GW~igp~~L~~~~~~vh~~~~-~~~~Tp~q~A~a~a~~~ 292 (420)
T KOG0257|consen 215 EWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRL-GWAIGPKHLYSALFPVHQNFV-FTCPTPIQEASAAAFAL 292 (420)
T ss_pred HHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeee-eeeechHHhhhhHHHHhhccc-cccCcHHHHHHHHHHhh
Confidence 776665542 247899999999999999999 999999888888887766432 2233333333222211
Q ss_pred cC--------CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013210 295 RI--------PHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 328 (447)
Q Consensus 295 ~~--------~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~ 328 (447)
.+ ....+..+.++++++.|.+.|.+.+.++..|.
T Consensus 293 ~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~~p~ 334 (420)
T KOG0257|consen 293 ELACLQPGGSYFITELVKEYKEKRDILAKALEELGLKVTGPE 334 (420)
T ss_pred hhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Confidence 22 22334778899999999999999988887665
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=244.76 Aligned_cols=330 Identities=14% Similarity=0.130 Sum_probs=223.9
Q ss_pred cccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh---cCCCC
Q 013210 66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQL---CSSGG 139 (447)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l---~~~gd 139 (447)
++++.+.+ +.+.+.+.....++.+.|.++.......+++++.+++++|++ .+++++|++++++.++.++ +++||
T Consensus 26 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd 105 (397)
T TIGR01976 26 GTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGD 105 (397)
T ss_pred cCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCC
Confidence 33443444 666666655444554445444434456789999999999974 4999999999998877665 57899
Q ss_pred eEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH
Q 013210 140 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 213 (447)
Q Consensus 140 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~ 213 (447)
+|+++.++|++....+...... .|.++.+++.+ |++++++++ +++|++|++++|+||||.+.|+++|.++|+
T Consensus 106 ~vl~~~~~~~s~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~~i-~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~ 183 (397)
T TIGR01976 106 EVIVTRLDHEANISPWLQAAER-AGAKVKWARVDEATGELHPDDLASLL-SPRTRLVAVTAASNTLGSIVDLAAITELVH 183 (397)
T ss_pred EEEEcCCchHhHHHHHHHHHHh-cCCEEEEEeccccCCCcCHHHHHHhc-CCCceEEEEeCCCCCCCccCCHHHHHHHHH
Confidence 9999999998877655333333 68888887653 689999999 778999999999999999999999999999
Q ss_pred hcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh------hhcCCCcc
Q 013210 214 DKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL------MLLGPTMN 285 (447)
Q Consensus 214 ~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~------~~~g~~~~ 285 (447)
++|+++++|+++. ....+..++++|+++.|+||++|+ ++ |+++.++++++.+........ ....++.+
T Consensus 184 ~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~~-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~ 259 (397)
T TIGR01976 184 AAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGP---HM-GILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQ 259 (397)
T ss_pred HcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCC---ce-EEEEEcHHHHhhCCCccccCccCCCcchhcCCCCC
Confidence 9999999999982 234455567899999999999974 34 999999888776653221100 01111222
Q ss_pred HH------HHHHHHccCC-------------cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccC
Q 013210 286 PK------VAFELSERIP-------------HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKE 345 (447)
Q Consensus 286 ~~------~a~~~~~~~~-------------~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~ 345 (447)
.. .|...+.... .+....++..++++++.+.|++.+ .++..+....
T Consensus 260 ~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~-------------- 325 (397)
T TIGR01976 260 YELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLA-------------- 325 (397)
T ss_pred HHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcc--------------
Confidence 11 1111121111 022334455677888888888876 4665442110
Q ss_pred CCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC--CCeEEEEeCCCC
Q 013210 346 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS--AGLVRMSVGYLG 423 (447)
Q Consensus 346 ~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~--~~~iRiS~g~~~ 423 (447)
..++++.|.+++. ....+.+.|... | +.++.|..+. +.....+|++ .+.||||++ ..
T Consensus 326 -~~~~~~~~~~~~~-~~~~l~~~L~~~---g-I~v~~~~~~~--------------~~~~~~~~~~~~~~~iRis~~-~~ 384 (397)
T TIGR01976 326 -ARVPTVSFTVHGL-PPQRVVRRLADQ---G-IDAWAGHFYA--------------VRLLRRLGLNDEGGVVRVGLA-HY 384 (397)
T ss_pred -CCCceEEEEeCCc-CHHHHHHHHHHC---C-eEEEeCccch--------------HHHHHHhCCCCCCCeEEEEee-cc
Confidence 1345888888643 245677777753 3 5566553221 2223344554 468999999 89
Q ss_pred CHHHHHHHHHHHH
Q 013210 424 TLDQRWSQFEKAL 436 (447)
Q Consensus 424 ~~~~~i~~l~~al 436 (447)
+++++++.|.++|
T Consensus 385 ~t~~di~~l~~~l 397 (397)
T TIGR01976 385 NTAEEVDRLLEAL 397 (397)
T ss_pred CCHHHHHHHHHhC
Confidence 9999999988764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-27 Score=239.18 Aligned_cols=311 Identities=14% Similarity=0.192 Sum_probs=219.2
Q ss_pred HHHHHhhcC-CCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHH
Q 013210 74 ETMRRMFAG-ELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152 (447)
Q Consensus 74 ~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~ 152 (447)
+++.+.++. .++++++.+..|. .+...++|+.+|+++|.+.+++++||++|++.++.+++++||+|+++.++|+++.
T Consensus 59 ~~~~~~~~~~~~~~~~s~~~~G~--~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~ 136 (393)
T TIGR01822 59 QAAKDALDEHGFGMSSVRFICGT--QDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASII 136 (393)
T ss_pred HHHHHHHHHhCCCCCCcCcccCC--hHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHH
Confidence 556655554 2566666666654 5667899999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhcCcccCeeEEEeCCCCHHHHHHhhcc---C--CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-
Q 013210 153 ALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---G--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS- 226 (447)
Q Consensus 153 ~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~---~--~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~- 226 (447)
..+. . .+.....+...|+++|++++++ + ++++|++++++||+|.+.|+++|.++|++||+++|+|++|.
T Consensus 137 ~~~~-~----~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~ 211 (393)
T TIGR01822 137 DGVR-L----CKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHAT 211 (393)
T ss_pred HHHH-h----cCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccc
Confidence 7662 2 2333334455789999988832 2 78899999999999999999999999999999999999983
Q ss_pred CCC-CC------ccC--CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHH---HHHHHHc
Q 013210 227 PLV-LS------PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK---VAFELSE 294 (447)
Q Consensus 227 ~~~-~~------~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~---~a~~~~~ 294 (447)
++. .. ... .++|+++.|+||++++ .++ ||+++++++++.+....... ..+++..+. ++..++.
T Consensus 212 g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g--~r~-G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~~~al~ 286 (393)
T TIGR01822 212 GFLGPTGRGSHELCGVMGRVDIITGTLGKALGG--ASG-GFTTARKEVVELLRQRSRPY--LFSNSLPPAVVGASIKVLE 286 (393)
T ss_pred cCcCCCCCchHHhcCCCCCCeEEEEEChHHhhC--CCc-EEEEeCHHHHHHHHHhCccc--eecCCCCHHHHHHHHHHHH
Confidence 221 11 111 2579999999999874 354 99999999988887643211 122222222 2222222
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccc
Q 013210 295 RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQ 374 (447)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~ 374 (447)
.++......+++.++++++.+.|++.+..+..+ .++++.+.+.+......|.+.|...
T Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~~~~~~i~~~~~~~~~~l~~~L~~~-- 344 (393)
T TIGR01822 287 MLEASNELRDRLWANTRYFRERMEAAGFDIKPA--------------------DHPIIPVMLYDAVLAQRFARRLLEE-- 344 (393)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHcCCCCCCC--------------------CCCEEEEEeCCHHHHHHHHHHHHHC--
Confidence 223334556778899999999998876543211 1337777776544567788887653
Q ss_pred cccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 375 FGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 375 ~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
| +.++ +.. .|.. ......||||++ ..++++.++.+.++|+++.+
T Consensus 345 -g-I~v~-~~~-----~~~~--------------~~~~~~iRis~~-~~~t~edi~~~~~~l~~~~~ 388 (393)
T TIGR01822 345 -G-IYVT-GFF-----YPVV--------------PKGQARIRVQIS-AAHTEEQLDRAVEAFTRIGR 388 (393)
T ss_pred -C-eeEe-eeC-----CCCC--------------CCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHH
Confidence 3 4444 311 0110 011246999999 88888889998888887644
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=245.51 Aligned_cols=339 Identities=16% Similarity=0.144 Sum_probs=222.5
Q ss_pred cccccccCCH-HHHHHhhc--CCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCCe--EEEeCChHHHHHHHHHHhc--
Q 013210 64 ASATFTVMEP-ETMRRMFA--GELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTEA--AYCTASGMSAISSVLMQLC-- 135 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~--~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~~~--~~~tsggt~A~~~al~~l~-- 135 (447)
+++++..+++ +.+.+++. ..++|+.+ .+..+....+.++++|+.+|+++|++. +++++|||+|+++++.++.
T Consensus 10 a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~ 89 (404)
T PRK14012 10 SATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHF 89 (404)
T ss_pred cCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHh
Confidence 3455555555 77777776 56777654 333333334667899999999999854 9999999999999987763
Q ss_pred --CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHH
Q 013210 136 --SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 208 (447)
Q Consensus 136 --~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I 208 (447)
++||+|+++.++|+++...+... .+ .|+++++++.+ |+++|++++ ++++++|++++++||||.+.|+++|
T Consensus 90 ~~~~gd~Vi~~~~~~~s~~~~~~~~-~~-~g~~~~~v~~~~~g~~d~~~l~~~i-~~~t~lv~~~~~~n~tG~~~~~~~I 166 (404)
T PRK14012 90 YQKKGKHIITSKTEHKAVLDTCRQL-ER-EGFEVTYLDPQSNGIIDLEKLEAAM-RDDTILVSIMHVNNEIGVIQDIAAI 166 (404)
T ss_pred hcCCCCEEEEecCccHHHHHHHHHH-Hh-CCCEEEEEccCCCCcCCHHHHHHhc-CCCCEEEEEECcCCCccchhhHHHH
Confidence 67999999999999887776433 23 58888888764 899999999 7889999999999999999999999
Q ss_pred HHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh----hhcCC
Q 013210 209 SRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL----MLLGP 282 (447)
Q Consensus 209 ~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~----~~~g~ 282 (447)
.++|+++|+++|+|++| +..+++....++|++++|+||.+|++| + |+++.+++...++.....+.. ...|+
T Consensus 167 ~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g--~-G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt 243 (404)
T PRK14012 167 GEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKG--I-GALYVRRKPRVRLEAQMHGGGHERGMRSGT 243 (404)
T ss_pred HHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCc--e-EEEEEecCCCCCCCceecCCCccCCccCCC
Confidence 99999999999999999 334456666789999999999888655 5 555554433222221111000 01221
Q ss_pred Cc-cHHHHH-HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 283 TM-NPKVAF-ELSER-IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 283 ~~-~~~~a~-~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
.. ....+. .++.. ........++..++++++.+.|++++. .+..+.....| ....++|.+.+
T Consensus 244 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~--------------~~~~~~~~~~~ 309 (404)
T PRK14012 244 LPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVP--------------GNLNVSFNYVE 309 (404)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCC--------------CEEEEEEeCcC
Confidence 11 111111 11111 122344566778888888888877653 33211101111 11245555433
Q ss_pred HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHH
Q 013210 359 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 359 ~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
. ..+...|+. +.|+.|..+. .....+...+..+|+. .+.||+|++ ..+++++++.+.+
T Consensus 310 ~---~~~~~~l~~------~~i~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~iRls~~-~~~t~~dvd~~~~ 371 (404)
T PRK14012 310 G---ESLIMALKD------LAVSSGSACT--------SASLEPSYVLRALGLNDELAHSSIRFSLG-RFTTEEEIDYAIE 371 (404)
T ss_pred H---HHHHHhCCC------eEEEchhhhC--------CCCCCCCHHHHHcCCChhhcCceEEEEec-CCCCHHHHHHHHH
Confidence 3 345666653 5667774322 1112222333445553 478999999 8888888888888
Q ss_pred HHHHhh
Q 013210 435 ALSRMQ 440 (447)
Q Consensus 435 al~~~~ 440 (447)
+|+++.
T Consensus 372 ~l~~~~ 377 (404)
T PRK14012 372 LVRKSI 377 (404)
T ss_pred HHHHHH
Confidence 887653
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=236.02 Aligned_cols=282 Identities=11% Similarity=0.107 Sum_probs=195.8
Q ss_pred ccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 93 YSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
..|+..+...+|++.+|+++|.+ .+++|+|+++++.+++. ++.+| .|++.+|+|+.+...++ ..|.++..+
T Consensus 34 ~~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~~~~-~vv~~~P~y~~y~~~~~-----~~G~~v~~v 106 (332)
T PRK06425 34 ISIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YINVG-NIIIVEPNFNEYKGYAF-----THGIRISAL 106 (332)
T ss_pred cccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-HhCCC-cEEEeCCChHHHHHHHH-----HcCCeEEEE
Confidence 45667777899999999999864 49999999999999986 56666 57777999999988773 368888888
Q ss_pred CCCCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc--------cCCCCeE
Q 013210 171 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--------ARLGADV 239 (447)
Q Consensus 171 ~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--------~~~g~di 239 (447)
+.++.+...+.++..++++|++++||||||.+.+ +++|+++|+++|+++|+||+|..+..+. ...+..+
T Consensus 107 p~~~~~~~~~~l~~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi 186 (332)
T PRK06425 107 PFNLINNNPEILNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVI 186 (332)
T ss_pred eCCcccCcHHHHhhcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEE
Confidence 7642111122332347899999999999999987 5677788899999999999997664321 1225689
Q ss_pred EEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc-cCCc-HHHHHHHHHHHHHHHHHHH
Q 013210 240 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPH-LGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 240 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~-l~~~~~~~~~~~~~l~~~L 317 (447)
++.||||.+|.+|.|+ ||+++++++++.+..... .. ..+..++..+.. ..+. +....+.+.++++++.+.|
T Consensus 187 ~~~SfSK~~~l~GlRi-Gy~v~~~~li~~l~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L 259 (332)
T PRK06425 187 IGRSLTKILGIPSLRI-GYIATDDYNMKISRKITE----PW--SVCDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNL 259 (332)
T ss_pred EEeecHHhcCCchhhh-eeeecCHHHHHHHHHcCC----CC--ccCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999988876543 11 122222211111 1122 3345667889999999999
Q ss_pred HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccC
Q 013210 318 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 318 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
++++..+..|. .|+++++.+++ ...+.+.|... | +.+..|....
T Consensus 260 ~~~g~~~~~~~-------------------~g~f~~~~~~~---~~~~~~~l~~~---g-i~v~~~~~f~---------- 303 (332)
T PRK06425 260 EAMGFRAAGDP-------------------SANFITFMIPD---AHDFYSYLLKN---G-ILVRLLDDYE---------- 303 (332)
T ss_pred HHCCCEECCCC-------------------CceEEEEEcCC---HHHHHHHHHHC---C-eEEEECCCCC----------
Confidence 98866543222 35688998862 45666666542 3 3444441100
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..++++|||+| . .+..+.|.++|+++
T Consensus 304 -----------~~~~~~iRis~~-~---~~~~~~l~~al~~~ 330 (332)
T PRK06425 304 -----------CLGEQYIRIAIR-R---RSFNIKLVNALRNF 330 (332)
T ss_pred -----------CCCCCEEEEEeC-C---HHHHHHHHHHHHHH
Confidence 112478999999 3 23455666666543
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=239.95 Aligned_cols=242 Identities=18% Similarity=0.208 Sum_probs=182.1
Q ss_pred HHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+|++.+++++ | .+ .+++|+|+++|+.+++.+++++||+|++++|.|+.+...+. ..|.++..++.
T Consensus 94 ~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~ 168 (413)
T PLN00175 94 PELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLS-----MAGAKIKTVTL 168 (413)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEEC
Confidence 46777777665 3 23 58999999999999999999999999999999998877763 25777777764
Q ss_pred C------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cC----
Q 013210 173 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR---- 234 (447)
Q Consensus 173 ~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~~---- 234 (447)
+ |+++|++++ .+++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+.++. ..
T Consensus 169 ~~~~~~~~~~~l~~~~-~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~ 247 (413)
T PLN00175 169 RPPDFAVPEDELKAAF-TSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGM 247 (413)
T ss_pred CcccCCCCHHHHHHhc-CcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCC
Confidence 3 689999988 778999999999999999986 6788999999999999999996654321 11
Q ss_pred CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHHHH
Q 013210 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIF 313 (447)
Q Consensus 235 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l 313 (447)
.+..+++.||||.++.+|.|+ ||+++++++++.+....... ....+.+.+.++..++... .++....+++.++++.+
T Consensus 248 ~~~vi~i~SfSK~~~~~G~Ri-G~~v~~~~l~~~l~~~~~~~-~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l 325 (413)
T PLN00175 248 YERTVTMNSLGKTFSLTGWKI-GWAIAPPHLTWGVRQAHSFL-TFATATPMQWAAVAALRAPESYYEELKRDYSAKKDIL 325 (413)
T ss_pred cCcEEEEecchhhccCcchhe-eeeEeCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 246799999999999999999 99999999998887665421 1233444455555555443 33556667789999999
Q ss_pred HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--CHHHHHHHHHHhh
Q 013210 314 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--TEEKANRLMNYLQ 370 (447)
Q Consensus 314 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--~~~~~~~l~~~l~ 370 (447)
.+.|++++..+..|. .|.++++.+. +......|...|.
T Consensus 326 ~~~L~~~g~~~~~p~-------------------g~~f~~~~~~~~~~~~~~~~~~~ll 365 (413)
T PLN00175 326 VEGLKEVGFKVYPSS-------------------GTYFVMVDHTPFGFENDIAFCEYLI 365 (413)
T ss_pred HHHHHHCCCeecCCC-------------------eeEEEEEeccccCCCCHHHHHHHHH
Confidence 999998766544332 3557888874 2212456666654
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=238.80 Aligned_cols=282 Identities=18% Similarity=0.203 Sum_probs=200.4
Q ss_pred HHHHHHHHHHh----CC----C-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----GT----E-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g~----~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.++|+.+|+++ |. + .+++|+|+++++..+++.++++||+|+++.|+|+.+...+. ..|.++..++.
T Consensus 70 ~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~G~~v~~v~~ 144 (383)
T TIGR03540 70 LAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTL-----FAGGEPYEMPL 144 (383)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHH-----hcCCEEEEEec
Confidence 56788888765 22 3 48899999999999999999999999999999999877662 26777776664
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cC--
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR-- 234 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~-- 234 (447)
+ |++++++.+ .+++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+.++. ..
T Consensus 145 ~~~~g~~~d~~~l~~~~-~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~ 223 (383)
T TIGR03540 145 KEENGFLPDFDAIPEDI-AKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVD 223 (383)
T ss_pred CcccCCccCHHHHHhhc-cccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCC
Confidence 2 678888888 678999999999999999998 6788999999999999999996543321 11
Q ss_pred --CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHH
Q 013210 235 --LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRAL 311 (447)
Q Consensus 235 --~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~ 311 (447)
...++++.|+||.+|.+|.|+ ||+++++++++.+...+... ....+.+.+.++..++... +++....+.+.++++
T Consensus 224 ~~~~~~i~~~SfSK~~g~~GlRi-G~~i~~~~l~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 301 (383)
T TIGR03540 224 GAKDVGIEFHSLSKTYNMTGWRI-GMAVGNADLIAGLGKVKTNV-DSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRD 301 (383)
T ss_pred CcccCEEEEEecccccCCcccee-eEEeCCHHHHHHHHHHHHhc-ccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 135688999999999999999 99999999998887665411 1111223344444444432 445556677889999
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~ 391 (447)
.+.+.|++++..+..|. .|.++++.+++..+...|.+.|.. +.| +.+..|...
T Consensus 302 ~~~~~L~~~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~ll~--~~g-i~v~~g~~f----- 354 (383)
T TIGR03540 302 LLLEALKKIGIDVEKPK-------------------ATFYVWVPVPEGYTSAEFAARLLE--ETG-VVVTPGVGF----- 354 (383)
T ss_pred HHHHHHHhCCCEecCCC-------------------cceEEEEECCCCCCHHHHHHHHHH--HCC-EEEecchhh-----
Confidence 99999998866554332 345789998743234567666532 123 344444211
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
. ....+++|||++ .. + +.+.++|+.+.
T Consensus 355 ---~-------------~~~~~~~Ris~~-~~--~---~~l~~~l~~l~ 381 (383)
T TIGR03540 355 ---G-------------EYGEGYIRISLT-VP--D---ERLEEAVARIK 381 (383)
T ss_pred ---C-------------ccCCCeEEEEec-CC--H---HHHHHHHHHHh
Confidence 0 001478999999 54 2 36666666554
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=236.33 Aligned_cols=242 Identities=19% Similarity=0.177 Sum_probs=177.4
Q ss_pred HHHHHHHHHH----hC----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAAL----EG----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l----~g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
..+++.+|++ .| .+.+++|+|+++|+..++..++++||+|+++.|.|+.+...+. ..|.++..++.+
T Consensus 64 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~ 138 (382)
T PRK06108 64 PELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPK-----ILGARVVCVPLD 138 (382)
T ss_pred HHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHH-----HCCCEEEEeeCC
Confidence 3566666655 35 3569999999999999999999999999999999998877663 257777776652
Q ss_pred --------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-------cC-
Q 013210 174 --------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------AR- 234 (447)
Q Consensus 174 --------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-------~~- 234 (447)
|++++++.+ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+.+ ..
T Consensus 139 ~~~~~~~~d~~~l~~~~-~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 217 (382)
T PRK06108 139 FGGGGWTLDLDRLLAAI-TPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDI 217 (382)
T ss_pred CCCCCccCCHHHHHHhc-CccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhc
Confidence 688999988 678999999999999999985 6788999999999999999996554320 11
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 310 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 310 (447)
.+.++++.|+||.+|++|.|+ ||+++++++++.+..... ......+.+.+.++...+... +.+....+++.+++
T Consensus 218 ~~~~~~~i~~~S~SK~~g~~G~Ri-G~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 295 (382)
T PRK06108 218 AEPDDRIIFVNSFSKNWAMTGWRL-GWLVAPPALGQVLEKLIE-YNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSR 295 (382)
T ss_pred CCCcCCEEEEeechhhccCcccce-eeeeCCHHHHHHHHHHHH-hcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 146799999999999999999 999999999988876543 111222333344444444432 33556667788888
Q ss_pred HHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013210 311 LIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 370 (447)
Q Consensus 311 ~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~ 370 (447)
+.+.+.|++.+ ..+..|. .|.++++.++.......+.+.|.
T Consensus 296 ~~l~~~L~~~~~~~~~~p~-------------------~g~~~~~~l~~~~~~~~~~~~ll 337 (382)
T PRK06108 296 DHLVDALRALPGVEVAKPD-------------------GAMYAFFRIPGVTDSLALAKRLV 337 (382)
T ss_pred HHHHHHHHhCCCCcccCCC-------------------eeEEEEEeCCCCCCHHHHHHHHH
Confidence 99999998763 3433221 34577888874333456666653
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=233.11 Aligned_cols=287 Identities=21% Similarity=0.236 Sum_probs=204.6
Q ss_pred ccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 93 YSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
..++.++...++++.+|+++|.+ ++++|+|+++++.+++.+++.+| +.|+++.|.|..+...++ ..|.++..
T Consensus 53 ~~~Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~-----~~g~~~~~ 127 (364)
T PRK04781 53 TRRYPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCAR-----LQNAPLVE 127 (364)
T ss_pred hccCCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH-----HcCCEEEE
Confidence 34455555689999999999864 59999999999999999998888 799999999987765542 25777777
Q ss_pred eCCC--------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc------c
Q 013210 170 VDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP------A 233 (447)
Q Consensus 170 v~~~--------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~------~ 233 (447)
++.+ |++++++.+.++++++|++++||||||.+.+.+++.++++. +++++|+||+|..+...+ .
T Consensus 128 v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~ 207 (364)
T PRK04781 128 VPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLA 207 (364)
T ss_pred EecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHh
Confidence 7641 56777554436789999999999999999998888887764 479999999996664322 1
Q ss_pred CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC--CcHHHHHHHHHHHHH
Q 013210 234 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRAL 311 (447)
Q Consensus 234 ~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~~~~~~~~~ 311 (447)
..+..+++.||||.||.+|.|+ ||+++++++++.+.+.+.. ...+...+..+..++..- ......++++.++++
T Consensus 208 ~~~~vi~~~SfSK~~gl~GlRv-Gy~v~~~~l~~~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~ 283 (364)
T PRK04781 208 RYDNLAVLRTLSKAHALAAARI-GSLIANAELIAVLRRCQAP---YPVPTPCAALAEQALSAPALAVTARRVAEVRAERE 283 (364)
T ss_pred hCCCEEEEecChhhccccccee-eeeeCCHHHHHHHHhccCC---CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2256899999999999999999 9999999999988876551 222333344444444332 234456667888899
Q ss_pred HHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccc
Q 013210 312 IFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 312 ~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
.+.+.|++++. ....|. .|.++++.+++ ...+.+.+... | +.|..|...
T Consensus 284 ~l~~~L~~~~~~~~~~p~-------------------~g~f~~~~~~~---~~~~~~~l~~~---g-I~v~~~~~~---- 333 (364)
T PRK04781 284 RLHAALAQLPGVRRVYPS-------------------QGNFLLVRFDD---AEAAFQALLAA---G-VVVRDQRAA---- 333 (364)
T ss_pred HHHHHHHhCCCCCeECCC-------------------CCcEEEEEcCC---HHHHHHHHHHC---C-eEEeeCCCC----
Confidence 99999988733 223343 46789999874 34556666542 3 444433110
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.+. ++++|||+| . .+..+.|.++|++++
T Consensus 334 -----------------~~~-~~~~Ris~~-~---~~~~~~l~~al~~~~ 361 (364)
T PRK04781 334 -----------------PRL-SDALRITLG-T---PEQNDRVLAALQRTQ 361 (364)
T ss_pred -----------------CCC-CCeEEEeCC-C---HHHHHHHHHHHHHHH
Confidence 011 478999999 4 344556666666654
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=233.80 Aligned_cols=251 Identities=18% Similarity=0.212 Sum_probs=184.5
Q ss_pred ccccCCH-HHHHHhhcCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEe
Q 013210 67 TFTVMEP-ETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAA 144 (447)
Q Consensus 67 t~~~~~~-~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~ 144 (447)
-+..+.+ +.+.++. ..++||++ .+..+...++.+.++++.+|+++|.+.+++|+|+++++..++.+++++||+|+++
T Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~ 89 (361)
T cd06452 11 GRLTPEARKALIEWG-DGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVD 89 (361)
T ss_pred CCCCHHHHHHHHHHh-cccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEc
Confidence 3444444 6666666 44577765 5667777788999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHhhcCcccCeeEEEeCCC-------CHHHHHHhhcc------CCceEEEEEcCCCCCccccCHHHHHHH
Q 013210 145 RTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ------GRTKVLYFESISNPTLAVANIPELSRL 211 (447)
Q Consensus 145 ~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~------~~t~lV~i~~~~NptG~v~~l~~I~~l 211 (447)
.+.|.+....+. ..|+++++++.+ |++++++++.. +++++|++++|+||+|.+.|+++|.++
T Consensus 90 ~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~ 164 (361)
T cd06452 90 GLAHYTSYVAAE-----RAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKV 164 (361)
T ss_pred CCcchHHHHHHH-----hcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHH
Confidence 999888765442 268888877643 78899888831 378999999999999999999999999
Q ss_pred HHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh----hhcCCCcc
Q 013210 212 AHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL----MLLGPTMN 285 (447)
Q Consensus 212 a~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~----~~~g~~~~ 285 (447)
|+++|+++|+|++|. .+.++..++++|+++.|+||++++++ ++ |++++++++++.+...+.... ...+.+..
T Consensus 165 ~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~-~~-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 242 (361)
T cd06452 165 CHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASA-PI-GVLATTEEWADIVFRTSQMFKIKEVELLGCTLR 242 (361)
T ss_pred HHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCC-Ce-EEEEECHHHHHHHhccccccccceeeeeccccC
Confidence 999999999999993 23456666789999999999998654 66 899999998888765443110 01122221
Q ss_pred HHHHHHHHccCCcH---HHHHHHHHHHHHHHHHHHHhC-CCeee
Q 013210 286 PKVAFELSERIPHL---GLRMKEHCHRALIFARRMKKL-GLKVL 325 (447)
Q Consensus 286 ~~~a~~~~~~~~~l---~~~~~~~~~~~~~l~~~L~~~-~~~v~ 325 (447)
...+..++..++.+ ..+..+..++++++.+.|+++ ++++.
T Consensus 243 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~v~ 286 (361)
T cd06452 243 GAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIEGIKQL 286 (361)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 11111111122222 223344445668899999988 55665
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=231.74 Aligned_cols=289 Identities=17% Similarity=0.203 Sum_probs=217.8
Q ss_pred cccCCCCchHHHHHHHHHHHhC-C--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 92 IYSRHFNPTVLNLSRQMAALEG-T--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 92 ~~~r~~~~~~~~l~~~ia~l~g-~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
.+.|+.++...++++.+|+.+| . +.++.++|+++.+..++++++.+||.|+++.|+|..+...++ ..|.++.
T Consensus 50 ~~~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~-----~~g~~~~ 124 (356)
T COG0079 50 KLNRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQ-----LAGAEVV 124 (356)
T ss_pred hhccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHH-----hcCCeEE
Confidence 3556677778899999999999 4 458889999999999999999999999999999998877763 3688888
Q ss_pred EeCC----CCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc--CCEEEEeCCCCCCCC-Ccc----CCCC
Q 013210 169 FVDI----SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVL-SPA----RLGA 237 (447)
Q Consensus 169 ~v~~----~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~-~~~----~~g~ 237 (447)
.++. .|++.+.+++ .+++++|++++||||||...+.++|.+++... +.++|+||+|..|.- +.. ..+.
T Consensus 125 ~v~~~~~~~d~~~~~~~~-~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~n 203 (356)
T COG0079 125 KVPLKEFRLDLDAILAAI-RDKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPN 203 (356)
T ss_pred EecccccccCHHHHHHhh-hcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCC
Confidence 8877 4788998888 66899999999999999999988888887754 889999999965543 111 2345
Q ss_pred eEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L 317 (447)
.+++.||||+||.+|.|+ ||+++++++++.+++.+.. +.-+.++..++..++...+.+....++....++++.+.|
T Consensus 204 livlRTfSKa~gLAGlRl-Gy~ia~~~~i~~l~~vr~p---~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l 279 (356)
T COG0079 204 LIVLRTFSKAFGLAGLRV-GYAIANPELIAALNKVRPP---FNVSSPALAAAIAALRDADYLEESVERIREERERLYAAL 279 (356)
T ss_pred EEEEEecHHhhhcchhce-eeccCCHHHHHHHHHhcCC---CCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999 9999999999999988762 223444444454545544567778888899999999999
Q ss_pred HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccC
Q 013210 318 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 318 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
+.++..-.+|. .+.++.+.++..+ +..+.+.|..+ |++.-..+ +
T Consensus 280 ~~~~~~~v~pS-------------------~aNFvlv~~~~~~-~~~l~~~L~~~---giivR~~~------------~- 323 (356)
T COG0079 280 KALGLFGVFPS-------------------QANFVLVRVPDAE-AAALAEALLKK---GILVRDCS------------S- 323 (356)
T ss_pred HhCCCCeecCC-------------------CCcEEEEECCCcc-HHHHHHHHHHC---CEEEEeCC------------C-
Confidence 99874323343 2458888887634 55677777652 32221111 0
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.+..++++|||+| . . +.-+.|.++|+++.
T Consensus 324 ----------~~~~~~~lRitvg-t--~-een~~ll~AL~~~~ 352 (356)
T COG0079 324 ----------VGLLPGYLRITVG-T--P-EENDRLLAALREVL 352 (356)
T ss_pred ----------CCCCCCeEEEEeC-C--H-HHHHHHHHHHHHHH
Confidence 1334679999999 3 2 22256666665543
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=234.40 Aligned_cols=242 Identities=20% Similarity=0.224 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++|+.+|++++ .+++++|+|+++|++.++.+++.+||+|++++|+|+.+...+. ..|.++..++.
T Consensus 71 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~v~~ 145 (387)
T PRK08960 71 LPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLR-----LVEGAAQLVPV 145 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-----hcCCeEEEEec
Confidence 4678888888862 3569999999999999999999999999999999999887763 24556655543
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cCC-C
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARL-G 236 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~~~-g 236 (447)
+ |++++++++ +++++++++.+|+||||.+.+ +++|+++|+++|+++|+|++|..+.++. ... .
T Consensus 146 ~~~~~~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~ 224 (387)
T PRK08960 146 GPDSRYQLTPALVERHW-NADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDD 224 (387)
T ss_pred CcccCCCCCHHHHHHHh-CccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccC
Confidence 2 688999988 778899999999999999997 4567778999999999999996654321 112 3
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-C-CcHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-I-PHLGLRMKEHCHRALIFA 314 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~-~~l~~~~~~~~~~~~~l~ 314 (447)
..+++.|+||.+|.+|.|+ ||+++++++++.+....... ....+.+.+.++..++.. . +++....+++.++++.+.
T Consensus 225 ~vi~~~S~SK~~g~~GlRi-G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~ 302 (387)
T PRK08960 225 DAFVLNSFSKYFGMTGWRL-GWLVAPPAAVPELEKLAQNL-YISASTPAQHAALACFEPETLAILEARRAEFARRRDFLL 302 (387)
T ss_pred CEEEEeecccccCCcccEE-EEEEcCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999 99999999998887765521 122234444444444432 1 345556667888999999
Q ss_pred HHHHhCCCee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHh
Q 013210 315 RRMKKLGLKV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYL 369 (447)
Q Consensus 315 ~~L~~~~~~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l 369 (447)
+.|++++..+ ..|. .|.++++.++. ..+...+.+.|
T Consensus 303 ~~L~~~~~~~~~~p~-------------------g~~f~~~~~~~~~~~~~~~~~~l 340 (387)
T PRK08960 303 PALRELGFGIAVEPQ-------------------GAFYLYADISAFGGDAFAFCRHF 340 (387)
T ss_pred HHHHhcCCcCCcCCC-------------------eeEEEEEeccccCCCHHHHHHHH
Confidence 9998876533 2232 45688888863 12245666654
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=231.72 Aligned_cols=241 Identities=15% Similarity=0.200 Sum_probs=182.3
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
.+....+|+.+|++++. +.+++|+|+++++..++.+++++||+|+++.|.|+.+...+. ..|.++..++.+
T Consensus 58 ~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~ 132 (351)
T PRK14807 58 DPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSK-----IAGAVEIPVKLKED 132 (351)
T ss_pred CccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEeecCCC
Confidence 44457899999999986 459999999999999999999999999999999997766552 257777776653
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC-c----cCCCCeEEEeCCC
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS-P----ARLGADVVVHSIS 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~-~----~~~g~di~~~S~s 245 (447)
|++++++++.+.++++|++++|+||||.+.+.+++.+++++++.++|+|++|..+.-. . ...+..+++.|+|
T Consensus 133 ~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~S 212 (351)
T PRK14807 133 YTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLS 212 (351)
T ss_pred CCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecch
Confidence 7899999884358999999999999999999999999999988899999999544211 1 1235689999999
Q ss_pred ccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 013210 246 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKV 324 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~v 324 (447)
|.+|.+|.|+ ||+++++++++.+...... ...+.+.+.++...+.. ..+.+..+.+.++++.+.+.|++. +..+
T Consensus 213 K~~~~~GlRi-G~~v~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~r~~l~~~l~~~~g~~~ 287 (351)
T PRK14807 213 KAFGLAGLRV-GYAVANENILKYLNLVKSP---YNINSLSQVIALKVLRT-GVLKERVNYILNERERLIKELSKIPGIKV 287 (351)
T ss_pred Hhcccchhce-eeeecCHHHHHHHHHccCC---CCcCHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 9999999999 9999999999988765441 12233444444444432 345556667788888899999765 3333
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 325 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 325 ~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
.|. .|+++++.+++ ...+.+.|..
T Consensus 288 -~~~-------------------~~~~~~i~~~~---~~~~~~~l~~ 311 (351)
T PRK14807 288 -YPS-------------------KTNFILVKFKD---ADYVYQGLLE 311 (351)
T ss_pred -CcC-------------------CccEEEEEcCC---HHHHHHHHHH
Confidence 222 35688888874 3455556554
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=238.86 Aligned_cols=276 Identities=14% Similarity=0.154 Sum_probs=199.0
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
.....++++.+|++++. +.+++|+|+++++.+++++++++||+|+++.|+|+.+...+. ..|.++..++.+
T Consensus 63 ~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~v~~v~~~~~ 137 (366)
T PRK01533 63 DGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAI-----IEGCEVKEVALNNG 137 (366)
T ss_pred CCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHH-----HcCCEEEEeecCCC
Confidence 33456899999999986 459999999999999999999999999999999999887763 368888877664
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH---hcCCEEEEeCCCCCCCCC-----c----cCCCCeE
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH---DKGVTVVVDNTFSPLVLS-----P----ARLGADV 239 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~---~~gi~livD~~~~~~~~~-----~----~~~g~di 239 (447)
|+++|++++ ++++++|++++||||||.+.+.+++.++++ +++ ++|+||+|..+... . ...+..+
T Consensus 138 ~~d~~~l~~~~-~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi 215 (366)
T PRK01533 138 VYDLDEISSVV-DNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNIL 215 (366)
T ss_pred CcCHHHHHHHh-CcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEE
Confidence 799999988 778999999999999999998776655554 444 67889998544321 1 1225689
Q ss_pred EEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013210 240 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 319 (447)
Q Consensus 240 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 319 (447)
++.||||.||.+|+|+ ||+++++++++.+...+.. ...+.+.+.++..++...+.+....+...++++++.+.++.
T Consensus 216 ~~~SfSK~~~l~GlRi-G~~i~~~~~~~~l~~~~~~---~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~ 291 (366)
T PRK01533 216 VLRTFSKAYGLASFRV-GYAVGHEELIEKLNVVRLP---FNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKE 291 (366)
T ss_pred EEeCchHHhcChHHHH-hHHhCCHHHHHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 9999999999988876531 23333444445455543333444555667778888888887
Q ss_pred CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCC
Q 013210 320 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399 (447)
Q Consensus 320 ~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~ 399 (447)
+++++..| .|+++++.+++ ...+.+.|... | +.|.. +
T Consensus 292 ~g~~~~~~--------------------~~nf~~~~~~~---~~~~~~~l~~~---G-I~Vr~-----------~----- 328 (366)
T PRK01533 292 NEIPFYQS--------------------QTNFIFLPVEN---GGEIYEACAHA---G-FIIRP-----------F----- 328 (366)
T ss_pred CCCccCCC--------------------cCcEEEEeCCC---HHHHHHHHHHC---C-cEEcc-----------C-----
Confidence 76544322 35689998863 34566666652 2 23221 0
Q ss_pred CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 400 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+++||||+|..++.+.+++.|.+.++..
T Consensus 329 ------------~~~iRis~~~~~~~~~l~~al~~~~~~~ 356 (366)
T PRK01533 329 ------------PNGVRITVGTREQNEGVISVLQQHFENK 356 (366)
T ss_pred ------------CCceEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 2569999993355555566665555443
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=236.84 Aligned_cols=244 Identities=19% Similarity=0.240 Sum_probs=180.9
Q ss_pred hHHHHHHHHHHHhC--------CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 100 TVLNLSRQMAALEG--------TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 100 ~~~~l~~~ia~l~g--------~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
....+|+.+|++++ .+ ++++|+|+++|+.+++++++++||+|++++|+|+.+...+.. .|.++..+
T Consensus 58 g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~-----~g~~~~~~ 132 (378)
T PRK07682 58 GLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTL-----AGGVPVPV 132 (378)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHHH-----cCCEEEEe
Confidence 34678888888764 23 699999999999999999999999999999999988776632 45555555
Q ss_pred CC-------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cC-
Q 013210 171 DI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR- 234 (447)
Q Consensus 171 ~~-------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~~- 234 (447)
+. .|++++++++ .+++++|++++|+||||.+.+ +++|+++|++|++++|+|++|..+.++. ..
T Consensus 133 ~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 211 (378)
T PRK07682 133 ATTLENEFKVQPAQIEAAI-TAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASI 211 (378)
T ss_pred ecCCccCCCCCHHHHHhhc-CcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhc
Confidence 43 2789999988 678999999999999999986 7889999999999999999996654421 11
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 310 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 310 (447)
...++++.|+||.++.+|.|+ ||+++++++++.+..... ......+.+.+.++..++... .++....+++++++
T Consensus 212 ~~~~~~~i~~~S~SK~~~~~GlR~-G~~~~~~~~i~~l~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 289 (378)
T PRK07682 212 KGMRERTILISGFSKGFAMTGWRL-GFIAAPVYFSEAMLKIHQ-YSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRR 289 (378)
T ss_pred ccccCCEEEEecCcccccChhhhh-hhhhcCHHHHHHHHHHHH-hhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 146799999999999999999 999999999998876554 111223334444444444432 34555667789999
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhh
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 370 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~ 370 (447)
+.+.+.|++++..+..|. .|.++|+.+.. ..+...+.+.+.
T Consensus 290 ~~~~~~L~~~~~~~~~p~-------------------g~~~~~~~~~~~~~~~~~~~~~ll 331 (378)
T PRK07682 290 NFFVTSFNEIGLTCHVPG-------------------GAFYAFPSISSTGLSSEEFAEQLL 331 (378)
T ss_pred HHHHHHHHHCCCccCCCC-------------------eeEEEEEeccCCCCCHHHHHHHHH
Confidence 999999998865544332 34577777641 223456666653
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=236.73 Aligned_cols=278 Identities=16% Similarity=0.206 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----C
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----D 174 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----d 174 (447)
..++++.+|++++++ .+++|+|+++++..++.+++++||+|+++.|.|..+...+. ..|.++..++.+ |
T Consensus 69 ~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~ 143 (367)
T PRK02731 69 GFELKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQ-----AVGAKPVEVPAKDYGHD 143 (367)
T ss_pred HHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHH-----HcCCeEEEecccCCCCC
Confidence 468999999999874 59999999999999999889999999999999987765442 268888877654 8
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc--CCEEEEeCCCCCCCCCc-----c----CCCCeEEEeC
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVLSP-----A----RLGADVVVHS 243 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~~~-----~----~~g~di~~~S 243 (447)
++++++++ ++++++|++++|+||||.+.+.++|.++++.. |+++|+|++|..+.+.. . .....+++.|
T Consensus 144 ~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S 222 (367)
T PRK02731 144 LDAMLAAV-TPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRT 222 (367)
T ss_pred HHHHHHHh-CCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEee
Confidence 89999998 67899999999999999999999999999874 89999999984433211 1 1145788999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK 323 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 323 (447)
+||.+|.+|.|+ ||+++++++++.+...... ...+.+++.++...+...+.+....+.+.++++.+.+.|++.+..
T Consensus 223 ~SK~~g~~G~Ri-G~l~~~~~~~~~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 298 (367)
T PRK02731 223 FSKAYGLAGLRV-GYGIAPPEIIDALNRVRQP---FNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAELGLE 298 (367)
T ss_pred ehHhhcCcccce-eeeeCCHHHHHHHHHccCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999999999999 9999999999888766541 222334444444444433334455566788888899999887654
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHH
Q 013210 324 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403 (447)
Q Consensus 324 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~ 403 (447)
+. |. .|+++++.++.......+.+.|... | +.+..|..
T Consensus 299 ~~-~~-------------------~g~~~~i~~~~~~~~~~~~~~L~~~---g-I~v~~~~~------------------ 336 (367)
T PRK02731 299 YI-PS-------------------VGNFILVDFDDGKDAAEAYQALLKR---G-VIVRPVAG------------------ 336 (367)
T ss_pred cC-CC-------------------CceEEEEECCCCCCHHHHHHHHHHC---C-EEEEeCCC------------------
Confidence 32 21 3569999986433456777777652 3 34444311
Q ss_pred HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 404 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 404 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+ .+++||||++ . .+.++.+.++|+++
T Consensus 337 ----~~-~~~~iRis~~-~---~~e~~~l~~aL~~~ 363 (367)
T PRK02731 337 ----YG-LPNALRITIG-T---EEENRRFLAALKEF 363 (367)
T ss_pred ----CC-CCCeEEEecC-C---HHHHHHHHHHHHHH
Confidence 11 1468999999 3 33455666666544
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=235.04 Aligned_cols=277 Identities=20% Similarity=0.189 Sum_probs=202.7
Q ss_pred chHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 99 PTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
....++++.+|++++. +.+++|+|+++++..++++++++||+|+++.|+|+.+...+. ..|.++..++.+
T Consensus 64 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~ 138 (359)
T PRK03158 64 GYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAI-----IEGAEVREVPLKDGG 138 (359)
T ss_pred CcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEEecCCCC
Confidence 3457899999999986 459999999999999999999999999999999998876652 257777777653
Q ss_pred -CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc---------cCCCCeEEE
Q 013210 174 -DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP---------ARLGADVVV 241 (447)
Q Consensus 174 -d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~---------~~~g~di~~ 241 (447)
|++++++++ ++++++|++++|+||||.+.+.++|.++++. +|+++|+||+|..+.+.. ...+.++++
T Consensus 139 ~d~~~l~~~~-~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~ 217 (359)
T PRK03158 139 HDLEAMLKAI-DEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVL 217 (359)
T ss_pred cCHHHHHHhc-CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEE
Confidence 789998888 7789999999999999999999999998887 599999999995544321 123578999
Q ss_pred eCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 242 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
.|+||.+|.+|.|+ ||+++++++++.+...+.. ...+.+++.++..++...+++....+.+.++++.+.+.|++.+
T Consensus 218 ~S~SK~~g~~GlRi-G~~v~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 293 (359)
T PRK03158 218 RTFSKAYGLAALRV-GYGIASEELIEKLNIARPP---FNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEYG 293 (359)
T ss_pred EechHhhcCcchhh-ehhcCCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999 9999999999888776541 2334444555555554333344455566778888888888775
Q ss_pred CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCC
Q 013210 322 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 401 (447)
Q Consensus 322 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~ 401 (447)
..+. |. .|.++++.++. ....+.+.|... | +.+..|..
T Consensus 294 ~~~~-~~-------------------~g~~i~~~~~~--~~~~~~~~l~~~---g-v~v~~g~~---------------- 331 (359)
T PRK03158 294 LFYY-PS-------------------QTNFIFVDTGR--DANELFEALLKK---G-YIVRSGAA---------------- 331 (359)
T ss_pred CeeC-CC-------------------cCcEEEEECCC--CHHHHHHHHHHC---C-eEEeeCCC----------------
Confidence 5442 22 35588888752 235666666542 3 45554421
Q ss_pred HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 402 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 402 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.| .++++|||++ . .+..+.+.++|++
T Consensus 332 ------f~-~~~~iRi~~~-~---~~~~~~l~~al~~ 357 (359)
T PRK03158 332 ------LG-FPTGVRITIG-L---KEQNDKIIELLKE 357 (359)
T ss_pred ------CC-CCCeEEEecC-C---HHHHHHHHHHHHH
Confidence 12 1478999999 3 3334555555544
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-27 Score=238.18 Aligned_cols=248 Identities=17% Similarity=0.153 Sum_probs=186.2
Q ss_pred HHHHHHHHHHhC----C-CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 102 LNLSRQMAALEG----T-EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 102 ~~l~~~ia~l~g----~-~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
..+++.++++++ . +++++|+|+++|+.+++++++++||.|++.+|+|+.+...+. ..|.++..++.+
T Consensus 124 ~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~g 198 (431)
T PRK15481 124 PELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLR-----YAGFSASPVSVDAEG 198 (431)
T ss_pred HHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCeEEeeccCCCC
Confidence 468888888865 2 479999999999999999999999999999999999988773 367777777654
Q ss_pred -CHHHHHHhhccCCceEEEEE-cCCCCCccccCHH---HHHHHHHhc-CCEEEEeCCCCCCCCC----cc--CCCCeEEE
Q 013210 174 -DHEMVNSAIVQGRTKVLYFE-SISNPTLAVANIP---ELSRLAHDK-GVTVVVDNTFSPLVLS----PA--RLGADVVV 241 (447)
Q Consensus 174 -d~~~l~~~i~~~~t~lV~i~-~~~NptG~v~~l~---~I~~la~~~-gi~livD~~~~~~~~~----~~--~~g~di~~ 241 (447)
|+++|++++ +.++++++++ +||||||.+.+.+ +|.++|+++ ++++|+||+|..+.++ +. .....+++
T Consensus 199 ~~~~~l~~~~-~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~ 277 (431)
T PRK15481 199 MQPEKLERAL-AQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALI 277 (431)
T ss_pred CCHHHHHHHH-hcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEE
Confidence 789999988 6678998887 9999999999865 999999999 9999999999655322 11 12467999
Q ss_pred eCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC---cHHHHHHHHHHHHHHHHHHHH
Q 013210 242 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~---~l~~~~~~~~~~~~~l~~~L~ 318 (447)
.||||.++ +|.|+ ||+++++++++.+....... ....+.+.+.++..++.... ++....+.+.++++.+.+.|+
T Consensus 278 ~SfSK~~~-~GlRi-G~~i~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~ 354 (431)
T PRK15481 278 RSVSKALG-PDLRL-AFVASDSATSARLRLRLNSG-TQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQ 354 (431)
T ss_pred eeeccccC-CCcee-EEEeCCHHHHHHHHHHHhcc-ccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 89999 99999999988886554411 11233344445544554322 245566778999999999999
Q ss_pred hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013210 319 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 319 ~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
+.+..+..|. .|.++|+.++.. ...+.+.|... | +.+..|
T Consensus 355 ~~~~~~~~p~-------------------gg~f~~~~l~~~--~~~~~~~l~~~---g-V~v~pg 394 (431)
T PRK15481 355 QYGIAIPSPG-------------------DGLNLWLPLDTD--SQATALTLAKS---G-WLVREG 394 (431)
T ss_pred HcCCccccCC-------------------CeEEEEEECCCC--HHHHHHHHHHC---C-cEEecC
Confidence 8765543332 577999999742 34566666542 3 455544
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=237.53 Aligned_cols=242 Identities=17% Similarity=0.160 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHhCC----C-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 101 VLNLSRQMAALEGT----E-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 101 ~~~l~~~ia~l~g~----~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
.+.+.+.+.++.|. + .+++|+|+++|+.+++.+++.+||+|+++.|.|+.+...++ ..|.++..++.+
T Consensus 73 r~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~-----~~g~~~~~~~~~~~ 147 (386)
T PRK09082 73 REAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIE-----LAGGRAVRVALQPP 147 (386)
T ss_pred HHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEecCcc
Confidence 34455555556664 2 59999999999999999999999999999999999877763 257777777654
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCCc------cC----CC
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP------AR----LG 236 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~~------~~----~g 236 (447)
|++++++.+ ++++++|++++|+||||.+. ++++|.++|++||+++|+|++|..+.++. .. .+
T Consensus 148 ~~~~d~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~ 226 (386)
T PRK09082 148 DFRVDWQRFAAAI-SPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRE 226 (386)
T ss_pred cccCCHHHHHHhc-CccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccC
Confidence 789999988 67899999999999999985 57888999999999999999996554321 11 24
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc-cCCcHHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~l~~~~~~~~~~~~~l~~ 315 (447)
..+++.|+||.+|.+|.|+ ||+++++++++.+....... ....+.+.+.++...+. ..+++.+..+.++++++.+.+
T Consensus 227 ~~i~~~S~SK~~~~~G~Ri-G~iv~~~~l~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 304 (386)
T PRK09082 227 RAFVVSSFGKTYHVTGWKV-GYCVAPAALSAEFRKVHQYN-TFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRA 304 (386)
T ss_pred cEEEEeechhhccchhhhh-hhhhCCHHHHHHHHHHHhhh-cCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999 99999999998887765411 12334444444444444 233355555677899999999
Q ss_pred HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHh
Q 013210 316 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYL 369 (447)
Q Consensus 316 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l 369 (447)
.|++.+..+..| ..|.++|+.++. ......|...|
T Consensus 305 ~L~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~l 341 (386)
T PRK09082 305 ALANSRFKLLPC-------------------EGTYFQLVDYSAISDLDDVEFCQWL 341 (386)
T ss_pred HHHhCCCcccCC-------------------CeeEEEEEeccccCCCCHHHHHHHH
Confidence 998866554322 245578888762 22245666654
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=234.57 Aligned_cols=240 Identities=13% Similarity=0.140 Sum_probs=177.0
Q ss_pred HHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.++++.+|+++ | .+ .+++|+|+++|+.+++++++.+||.|++..|+|+.+...+. ..|.++..++.
T Consensus 71 ~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~ 145 (388)
T PRK07366 71 LDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVY-----LAGGQIYPMPL 145 (388)
T ss_pred HHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEEEC
Confidence 56888888876 3 24 58999999999999999999999999999999999987763 25777777655
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-------cCC
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARL 235 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-------~~~ 235 (447)
+ |++++++.+ .+++++|++++||||||.+.+ +++|+++|++||+++|+||+|..+.++. ..+
T Consensus 146 ~~~~~~~~d~~~l~~~~-~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~ 224 (388)
T PRK07366 146 RAENDFLPVFADIPTEV-LAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQA 224 (388)
T ss_pred CCccCCCCCHHHHHHhh-cccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhC
Confidence 3 567787766 567999999999999999987 5577889999999999999996654321 111
Q ss_pred ----CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCc-cHHHHHHHHcc-CCcHHHHHHHHHHH
Q 013210 236 ----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM-NPKVAFELSER-IPHLGLRMKEHCHR 309 (447)
Q Consensus 236 ----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~a~~~~~~-~~~l~~~~~~~~~~ 309 (447)
...+++.||||.+|.+|.|+ ||+++++++++.+...+... ..+... .+.++...+.. .+++....+.+.++
T Consensus 225 ~~~~~~vi~~~SfSK~~g~~GlRi-G~~v~~~~li~~l~~~~~~~--~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~ 301 (388)
T PRK07366 225 DPEKSVSIEFFTLSKSYNMGGFRI-GFAIGNAQLIQALRQVKAVV--DFNQYRGILNGAIAALTGPQATVQQTVQIFRQR 301 (388)
T ss_pred CCCcccEEEEeecccccCCcchhh-eehcCCHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 24588999999999999999 99999999999888766521 111111 12333333322 23455666778899
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHh
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYL 369 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l 369 (447)
++.+.+.|++++..+..|. .|.++|+.++.. .....+.+.+
T Consensus 302 r~~l~~~L~~~~~~~~~p~-------------------~g~f~~~~~~~~~~~~~~~~~~~l 344 (388)
T PRK07366 302 RDAFINALHQIGWPVPLPE-------------------ATMYVWAKLPEPWQGNSVEFCTQL 344 (388)
T ss_pred HHHHHHHHHHCCCcccCCC-------------------eeEEEEEECCcccCCCHHHHHHHH
Confidence 9999999988765443332 567899998742 1234565555
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=235.06 Aligned_cols=282 Identities=15% Similarity=0.149 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..+|++.+|+++ | .+ .+++|+|+++++..++.+++++||.|+++.|+|+.+...+. ..|.++..++
T Consensus 72 ~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~i~ 146 (389)
T PRK08068 72 YPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVA-----LARAQFETMP 146 (389)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEee
Confidence 467888898886 4 24 68999999999999999999999999999999998887763 2577777766
Q ss_pred CC-------CHHHHHHhhccCCceEEEEEcCCCCCccccCH---HHHHHHHHhcCCEEEEeCCCCCCCCCc------cC-
Q 013210 172 IS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLSP------AR- 234 (447)
Q Consensus 172 ~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l---~~I~~la~~~gi~livD~~~~~~~~~~------~~- 234 (447)
.+ |++++++++ ++++++|++++||||||.+.+. ++|+++|+++++++|+||+|..+.++. ..
T Consensus 147 ~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~ 225 (389)
T PRK08068 147 LIAENNFLPDYTKIPEEV-AEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQT 225 (389)
T ss_pred cccccCCCCCHHHHHHhc-cccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhC
Confidence 53 678898888 6789999999999999999975 577888999999999999996553321 11
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCC-ccHHHHHHHHc-cCCcHHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSE-RIPHLGLRMKEHCHR 309 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~-~~~~l~~~~~~~~~~ 309 (447)
.+..+++.|+||.+|.+|.|+ ||+++++++++.+....... ..+.. ..+.++...+. ..+++....+++.++
T Consensus 226 ~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~l~~~l~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 302 (389)
T PRK08068 226 PGAKDVGIELYTLSKTFNMAGWRV-AFAVGNESVIEAINLLQDHL--FVSLFGAIQDAAIEALLSDQSCVAELVARYESR 302 (389)
T ss_pred CCccCCEEEEecchhccCCcccee-EeEecCHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 135689999999999999999 99999999999887765521 11211 22333333332 224455667778999
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
++.+.+.|++++..+..|. .|.++++.+++..+...+.+.|... .| +.+..|....
T Consensus 303 r~~~~~~L~~~g~~~~~~~-------------------g~~~~~v~~~~~~~~~~~~~~l~~~--~g-i~v~pg~~f~-- 358 (389)
T PRK08068 303 RNAFISACREIGWEVDAPK-------------------GSFFAWMPVPKGYTSEQFADLLLEK--AH-VAVAPGNGFG-- 358 (389)
T ss_pred HHHHHHHHHHCCCcccCCC-------------------eeEEEEEECCCCCCHHHHHHHHHHh--CC-EEEecchHhC--
Confidence 9999999988765543222 3446799987432356677776531 23 3444441110
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
...++++|||++ ..+ +.+.++++++.
T Consensus 359 -------------------~~~~~~iRi~~~-~~~-----~~l~~al~~l~ 384 (389)
T PRK08068 359 -------------------EHGEGYVRVGLL-TDE-----ERLREAVERIG 384 (389)
T ss_pred -------------------ccCCCeEEEEEc-CCH-----HHHHHHHHHHH
Confidence 012478999999 532 35666666554
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=236.81 Aligned_cols=216 Identities=16% Similarity=0.165 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 100 TVLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 100 ~~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
....+|+.+|++++ .+++++|+|+++|+.+++.+++++||.|+++.|+|+.+...+. ..|.++..++
T Consensus 109 G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~-----~~g~~~~~~~ 183 (462)
T PLN02187 109 GILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAA-----YSGLEVRKFD 183 (462)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHH-----HcCCEEEEEe
Confidence 35678999999873 3569999999999999999999999999999999999876652 2577777765
Q ss_pred C---C----CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cCC
Q 013210 172 I---S----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL 235 (447)
Q Consensus 172 ~---~----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~~ 235 (447)
. + |+++|++++ ++++++|++++||||||.+.+ +++|+++|++||+++|+||+|..+.+.. ..+
T Consensus 184 l~~~~~~~~d~~~l~~~~-~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~ 262 (462)
T PLN02187 184 LLPEKEWEIDLEGIEAIA-DENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKF 262 (462)
T ss_pred CccccCCccCHHHHHHhc-CCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHh
Confidence 4 1 789999988 778999999999999999987 7788999999999999999997655421 111
Q ss_pred ---CCeEEEeCCCccccCCCCeeEEEEEcC-h-HH---HHHHHHHhhhhhhhcC-CCccHHHHHHHHcc--CCcHHHHHH
Q 013210 236 ---GADVVVHSISKFISGGADIIAGAVCGP-A-NL---VNSMMDLHQGALMLLG-PTMNPKVAFELSER--IPHLGLRMK 304 (447)
Q Consensus 236 ---g~di~~~S~sK~~g~~g~~igG~l~~~-~-~~---~~~l~~~~~~~~~~~g-~~~~~~~a~~~~~~--~~~l~~~~~ 304 (447)
...+++.|+||.|+.+|+|+ ||++++ + .+ ++.+...+.......+ +.+.+.++..++.. .+++....+
T Consensus 263 ~~~~~vi~l~SfSK~f~~pGlRi-G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~ 341 (462)
T PLN02187 263 ASIVPVLTLAGISKGWVVPGWKI-GWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNK 341 (462)
T ss_pred ccCCcEEEEecchhhcCCcccee-EEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 24789999999999999999 999873 3 33 3455444442211112 33444444444432 234566677
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 013210 305 EHCHRALIFARRMKKLGL 322 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~~~ 322 (447)
.+.++++.+.+.|++++.
T Consensus 342 ~l~~~r~~l~~~L~~~~~ 359 (462)
T PLN02187 342 ILKHNVDLVCDRLKDIPC 359 (462)
T ss_pred HHHHHHHHHHHHHhhCCC
Confidence 788999999999988654
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=234.76 Aligned_cols=243 Identities=17% Similarity=0.170 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|+++ | .+ .+++|+|+++++..++..++++||+|++++|+|+.+...+. ..|.++..++
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~-----~~g~~~~~v~ 145 (385)
T PRK09276 71 MLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTI-----FAGGEPYFMP 145 (385)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHH-----HcCCEEEEEe
Confidence 356888888876 3 23 38889999999999999999999999999999998877663 2577777665
Q ss_pred CC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC-
Q 013210 172 IS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR- 234 (447)
Q Consensus 172 ~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~- 234 (447)
.+ |++++++.+ .+++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+.++ ...
T Consensus 146 ~~~~~g~~~d~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~ 224 (385)
T PRK09276 146 LKEENGFLPDLDAIPEDV-AKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEV 224 (385)
T ss_pred cCCCCCCcCCHHHHHHhc-cccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhcc
Confidence 42 678888887 678999999999999999997 578889999999999999999655332 111
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 310 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 310 (447)
.+.++++.|+||.+|.+|.|+ ||+++++++++.+...+... ....+.+.+.++...+... .++....+++.+++
T Consensus 225 ~~~~~~~i~~~S~SK~~g~~GlRi-G~~i~~~~l~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 302 (385)
T PRK09276 225 PGAKDVGIEFHSLSKTYNMTGWRI-GFAVGNADLIAGLGKVKSNV-DSGVFQAIQEAGIAALNGPQEVVEELRKIYQERR 302 (385)
T ss_pred CCCcCCEEEEecchhhcCCcchhh-eeeeCCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 245789999999999999999 99999999999887765411 1111222333333444332 33455556678889
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 370 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~ 370 (447)
+.+.+.|++.+.++..|. .|.++++.++...+...+...|.
T Consensus 303 ~~l~~~L~~~~~~~~~~~-------------------~~~~~~v~~~~~~~~~~l~~~ll 343 (385)
T PRK09276 303 DILVEGLRKLGLEVEPPK-------------------ATFYVWAPVPKGYTSAEFATLLL 343 (385)
T ss_pred HHHHHHHHhCCCcccCCC-------------------cceEEEEECCCCCCHHHHHHHHH
Confidence 999999988765544332 34568898874323455666653
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=228.59 Aligned_cols=242 Identities=19% Similarity=0.178 Sum_probs=182.2
Q ss_pred HHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCC---CeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 102 LNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSG---GHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
..+++.+++++ | .+ ++++|+|+++|+..++..++++| |.|+++.|.|+.+...+. ..|.++..
T Consensus 39 ~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~-----~~g~~~~~ 113 (350)
T TIGR03537 39 KALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGAL-----FAGGEPTA 113 (350)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHH-----hcCCEEEE
Confidence 56778888775 4 34 79999999999999999998877 699999999999988773 36778877
Q ss_pred eCCC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----cc-
Q 013210 170 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA- 233 (447)
Q Consensus 170 v~~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~- 233 (447)
++.+ |++++++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+. ..
T Consensus 114 v~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~ 192 (350)
T TIGR03537 114 VKLKKEDGFLLRLEKVEKSI-LEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALE 192 (350)
T ss_pred cccCcccCCccCHHHHHHhh-hhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhh
Confidence 7652 789999988 678999999999999999998 889999999999999999999654322 11
Q ss_pred -CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCC-ccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 234 -RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 234 -~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
..+..+++.|+||.+|.+|.|+ ||+++++++++.+...+... ..+.+ ..+.++...+....++..+.++++++++
T Consensus 193 ~~~~~~i~~~s~SK~~g~~GlRi-G~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~ 269 (350)
T TIGR03537 193 VGIENVLAFHSLSKRSGMTGYRS-GFVAGDEKLISFLRKLRANF--GVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRD 269 (350)
T ss_pred cCcCCEEEEeecccccCCccccc-eeeecCHHHHHHHHHHHHhh--ccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 2245799999999999999998 99999999998888765521 11221 2233333344333445566677888899
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
.+.+.|++.+.++..|. .|.++++.++.......+.+.|..
T Consensus 270 ~~~~~l~~~g~~~~~~~-------------------g~~~~~~~~~~~~~~~~l~~~L~~ 310 (350)
T TIGR03537 270 LFIEFFNKVGLEYLYPD-------------------ATFYLWVKVPSGIDAKDYALRLLE 310 (350)
T ss_pred HHHHHHHHCCCcccCCC-------------------eEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999988765444322 345788988753335677777765
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=235.48 Aligned_cols=303 Identities=17% Similarity=0.218 Sum_probs=210.6
Q ss_pred chHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 99 PTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
+...++++.+++++|++ .+++|+|+++++++++.+++++||+|+++.++|+++...+...... .|.+++.++.+
T Consensus 44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~ 122 (376)
T TIGR01977 44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQ-IGVEITIVKCDNE 122 (376)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHH-cCcEEEEEecCCC
Confidence 66789999999999974 5899999999999999998899999999999999887666444433 58888887654
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccc
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFI 248 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~ 248 (447)
|++++++++ ++++++|++++++||||.+.|+++|.++|+++|+++|+|+++ +...++....++|+++.|+||++
T Consensus 123 ~~~d~~~l~~~~-~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l 201 (376)
T TIGR01977 123 GLISPERIKRAI-KTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGL 201 (376)
T ss_pred CCcCHHHHHHhc-CCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccc
Confidence 799999999 778999999999999999999999999999999999999999 33455666678999999999998
Q ss_pred cCCCCeeEEEEEcChHHHHHHHHHh----hhh---------hhhcCCCccH-HHHH-HHHccC--CcHHHHHHHHHHHHH
Q 013210 249 SGGADIIAGAVCGPANLVNSMMDLH----QGA---------LMLLGPTMNP-KVAF-ELSERI--PHLGLRMKEHCHRAL 311 (447)
Q Consensus 249 g~~g~~igG~l~~~~~~~~~l~~~~----~~~---------~~~~g~~~~~-~~a~-~~~~~~--~~l~~~~~~~~~~~~ 311 (447)
++|.. .|++++.++..+..+.... ... ....|+...+ ..+. .++..+ .......++..++++
T Consensus 202 ~~p~g-~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~ 280 (376)
T TIGR01977 202 LGPQG-TGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTE 280 (376)
T ss_pred cCCCC-ceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 76543 4344455443222111100 000 0011211111 1111 112111 123345566788888
Q ss_pred HHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccc
Q 013210 312 IFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 312 ~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
++.+.|++.+. ++..|..+. ..+++++|.+++.. ...+.+.|... +| +.++.|..++...
T Consensus 281 ~~~~~l~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~-~~~~~~~L~~~--~g-i~v~~g~~~~~~~ 341 (376)
T TIGR01977 281 KLLNGLREINKVKIYGPADPA---------------NRVGVVSFTVEGID-SEEVADILDEK--FD-IATRTGLHCAPLA 341 (376)
T ss_pred HHHHHHhcCCCeEEeCCCCcc---------------ccCCeEEEEECCCC-HHHHHHHHhcc--CC-EEEEcccccchHH
Confidence 99999987654 555442111 13558999987543 56677777652 24 5667675543322
Q ss_pred ccccccCCCCCHHHHHhcCC-CCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 391 CSGSSTSSELNAEEKALAGI-SAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~-~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+ ..+|. ..+.||+|++ ..+++++++.+.++|++
T Consensus 342 ~--------------~~~g~~~~~~iRis~~-~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 342 H--------------KTIGTFATGTIRLSLG-YFNTEEEIEKLLEALSE 375 (376)
T ss_pred H--------------HHhCCCCCCeEEEecC-CCCCHHHHHHHHHHHhh
Confidence 1 11222 3578999999 99999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=231.79 Aligned_cols=283 Identities=14% Similarity=0.123 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----C
Q 013210 101 VLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----D 174 (447)
Q Consensus 101 ~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----d 174 (447)
...+|+.||++++. +.+++|+|+++++..++..++++||.|++..|+|+.+...+. ..|.++..++.+ |
T Consensus 69 ~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~vp~~~~~~~ 143 (369)
T PRK08153 69 NHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVA-----GFGGRLVTVPYRDDRED 143 (369)
T ss_pred cHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHH-----HcCCeEEEeeCCCCCCC
Confidence 56899999999986 459999999999999999989999999999999998876653 246666666543 7
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc--c----CCCCeEEEeCCCc
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP--A----RLGADVVVHSISK 246 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~--~----~~g~di~~~S~sK 246 (447)
++++++.+.++++++|++++|+||||.+.+.+++.++++. +++++|+||+|..+.... . .....+++.||||
T Consensus 144 ~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK 223 (369)
T PRK08153 144 LDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSK 223 (369)
T ss_pred HHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchH
Confidence 7888776645689999999999999999998877777764 389999999996554321 1 1235689999999
Q ss_pred cccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013210 247 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY 326 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~ 326 (447)
.+|.+|.|+ ||+++++++++.+...+.. ...+.+.+.++..++...+.+....+.+.++++.+.+.|++.+..+.
T Consensus 224 ~~g~~GlRi-G~~v~~~~~~~~l~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~- 298 (369)
T PRK08153 224 AYGLAGARV-GYAIGAPGTIKAFDKVRNH---FGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARANGLTPL- 298 (369)
T ss_pred hccCcchhe-eeeecCHHHHHHHHHhhcC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCccC-
Confidence 999999999 9999999999888766541 23333444444444443233445556678888889998987765322
Q ss_pred CCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHH
Q 013210 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 405 (447)
Q Consensus 327 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~ 405 (447)
|. .|.++++.++ +...+..+.++|... | +.+.. |..
T Consensus 299 p~-------------------~~~f~~~~~~~~~~~a~~l~~~l~~~---G-i~v~~---------p~~----------- 335 (369)
T PRK08153 299 PS-------------------ATNFVAIDCGRDGAFARAVLDGLIAR---D-IFVRM---------PGV----------- 335 (369)
T ss_pred CC-------------------cCcEEEEECCCCcccHHHHHHHHHHC---C-eEEee---------CCC-----------
Confidence 22 3558888875 233466777777652 3 33311 110
Q ss_pred HhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 406 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 406 ~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..++++|||++..++.+.+++.|.+.++.+
T Consensus 336 ---~~~~~~iRis~~~~~~~~~~~~al~~~~~~~ 366 (369)
T PRK08153 336 ---APLDRCIRVSCGPDEELDLFAEALPEALEAA 366 (369)
T ss_pred ---CCCCCeEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 0124689999993244444555555544433
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=231.80 Aligned_cols=275 Identities=17% Similarity=0.206 Sum_probs=196.7
Q ss_pred chHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 99 PTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
+...++++.||+.+|. +++++|+|+++++..++.+++++||+|++++|+|+.+...+. ..|.++..++.+
T Consensus 78 ~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~ 152 (370)
T PRK09105 78 ELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAAD-----AQGAPVAKVPLRADG 152 (370)
T ss_pred chHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEecCCCCC
Confidence 3467899999999875 559999999999999999999999999999999999877663 267777777653
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc--cC----CCCeEEEeC
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP--AR----LGADVVVHS 243 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~--~~----~g~di~~~S 243 (447)
|++++++. .+++++|++++||||||.+.+.++|.++++. +++++|+||+|..+...+ .. ....+++.|
T Consensus 153 ~~d~~~l~~~--~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~S 230 (370)
T PRK09105 153 AHDVKAMLAA--DPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRT 230 (370)
T ss_pred CCCHHHHHhc--CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEec
Confidence 67888765 3568999999999999999998888887754 489999999994443221 11 235688999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK 323 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 323 (447)
+||.+|++|+|+ ||+++++++++.+..... ...+...+.++..++...+++....+++.++++.+.+.|++.+..
T Consensus 231 fSK~~g~~GlRi-G~~v~~~~~i~~l~~~~~----~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~ 305 (370)
T PRK09105 231 FSKLYGMAGMRL-GLAAARPDLLAKLARFGH----NPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKKGYK 305 (370)
T ss_pred ccHhhcCCccce-eeeecCHHHHHHHHhcCC----CCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999 999999999988876521 222333333444444443445556677889999999999987654
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHH
Q 013210 324 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403 (447)
Q Consensus 324 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~ 403 (447)
+..| .|+++.+.++. +...+.+.|... | +.+ |.. +
T Consensus 306 ~~~~--------------------~~~f~~~~~~~--~~~~l~~~L~~~---g-I~v--~~~--------~--------- 340 (370)
T PRK09105 306 CTPS--------------------QANCFMVDVKR--PAKAVADAMAKQ---G-VFI--GRS--------W--------- 340 (370)
T ss_pred cCCC--------------------CCcEEEEeCCC--CHHHHHHHHHHC---C-cEE--ecC--------C---------
Confidence 4322 24466676652 235666666642 2 333 311 0
Q ss_pred HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 404 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 404 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..++++|||++ . ++.++.|.++|+.+
T Consensus 341 -----~~~~~~~Ris~~-~---~~~~~~l~~al~~~ 367 (370)
T PRK09105 341 -----PIWPNWVRVTVG-S---EEEMAAFRSAFAKV 367 (370)
T ss_pred -----CCCCCeEEEEcC-C---HHHHHHHHHHHHHH
Confidence 011478999999 4 34456666666654
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=229.30 Aligned_cols=277 Identities=18% Similarity=0.231 Sum_probs=203.3
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
.+...++|+.+|+++++ +++++|+|+++++.+++++++++||+|+++.|+|+.+...+. ..|.++..++.+
T Consensus 53 ~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~ 127 (346)
T TIGR01141 53 DPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAK-----IHGAEVVKVPLDED 127 (346)
T ss_pred CCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEeccCCC
Confidence 34457899999999985 459999999999999999998999999999999987665442 257788777653
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc--CCEEEEeCCCCCCCCC--cc----CCCCeEEEe
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVLS--PA----RLGADVVVH 242 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~~--~~----~~g~di~~~ 242 (447)
|++++++++ ++++++|++++|+||||.+.|++++.++|+.+ |+++|+|++|..+... +. ..+.++++.
T Consensus 128 ~~~d~~~l~~~~-~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~ 206 (346)
T TIGR01141 128 GQLDLEDILVAI-DDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLR 206 (346)
T ss_pred CCCCHHHHHHhc-CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEe
Confidence 889999987 77899999999999999999999999999877 9999999998654332 11 124568899
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC-C
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-G 321 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~ 321 (447)
|+||++|.+|.|+ ||++.++++++.+...... ...+.+++.++...+....++....+++.++++++.+.|+++ +
T Consensus 207 S~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 282 (346)
T TIGR01141 207 TLSKAFGLAGLRI-GYAIANAEIIDALNKVRAP---FNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPG 282 (346)
T ss_pred hhhHhhhchhhhc-eeeecCHHHHHHHHhccCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999899998 9999999998888765441 222333444444444333335556677888999999999887 4
Q ss_pred CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCC
Q 013210 322 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 401 (447)
Q Consensus 322 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~ 401 (447)
.++ .|. .|.++++.++. ..+.+.+.|... | +.+..|...
T Consensus 283 ~~~-~~~-------------------~g~~~~~~~~~--~~~~~~~~L~~~---g-I~v~~g~~f--------------- 321 (346)
T TIGR01141 283 LEV-YPS-------------------DANFVLIRFPR--DADALFEALLEK---G-IIVRDLNSY--------------- 321 (346)
T ss_pred CEE-CCC-------------------cCCEEEEecCC--CHHHHHHHHHHC---C-eEEEeCCCc---------------
Confidence 443 222 35689999875 356777777753 3 455544210
Q ss_pred HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 402 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 402 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
.+. ++.+|+|++ . ++.++.+.++|
T Consensus 322 ------~~~-~~~iRls~~-~---~~~i~~~~~~l 345 (346)
T TIGR01141 322 ------PGL-PNCLRITVG-T---REENDRFLAAL 345 (346)
T ss_pred ------CCC-CCeEEEecC-C---HHHHHHHHHHh
Confidence 012 578999999 3 44566665554
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=229.58 Aligned_cols=287 Identities=18% Similarity=0.240 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC------
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------ 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~------ 172 (447)
..++++.+|+++|.+ ++++|+|+++|+..++++++.+||+|++++|.|..+...+. . .|.++..++.
T Consensus 68 ~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~----~-~g~~~~~v~~~~~~~~ 142 (380)
T PRK06225 68 FPELRELILKDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFAS----R-FGAEVIEVPIYSEECN 142 (380)
T ss_pred hHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH----H-hCceEEeeccccccCC
Confidence 578999999999864 59999999999999999999999999999999987765552 2 5777776653
Q ss_pred --CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC---cc--CCCCeEEEe
Q 013210 173 --SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---PA--RLGADVVVH 242 (447)
Q Consensus 173 --~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---~~--~~g~di~~~ 242 (447)
.|++++++.+ ++++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..+... .. ....++++.
T Consensus 143 ~~~d~~~l~~~~-~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~ 221 (380)
T PRK06225 143 YKLTPELVKENM-DENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSY 221 (380)
T ss_pred ccCCHHHHHhhc-CCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEe
Confidence 2788999988 778999999999999999875 889999999999999999998433211 11 124678899
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHH-HHHHHHHHHHHHHHHhCC
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM-KEHCHRALIFARRMKKLG 321 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~~~l~~~L~~~~ 321 (447)
|+||++|++|.|+ ||+++++++++.+...... ....+.+.+.++...+.....+.+++ +.++++++.+.+.|++++
T Consensus 222 s~SK~~g~~G~Ri-G~i~~~~~l~~~~~~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 298 (380)
T PRK06225 222 SFSKIFGMAGLRI-GAVVATPDLIEVVKSIVIN--DLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDEIE 298 (380)
T ss_pred echhhcCCcccee-EEEecCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999998 9999999998888765431 12223333333333333322332333 345666777888888752
Q ss_pred -Ceee-CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCC
Q 013210 322 -LKVL-YPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 398 (447)
Q Consensus 322 -~~v~-~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~ 398 (447)
..+. .| ..|+++++.++. ......+.+.|.. .| +.+..|..+ .
T Consensus 299 ~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~l~~~l~~---~g-i~v~~g~~~--------~--- 344 (380)
T PRK06225 299 GVFLPVYP-------------------SHGNMMVIDISEAGIDPEDLVEYLLE---RK-IFVRQGTYT--------S--- 344 (380)
T ss_pred CCccccCC-------------------CCCeEEEEEcccccCCHHHHHHHHHH---CC-EEEcCCccc--------C---
Confidence 2221 12 246688888853 2235667777764 23 344444211 0
Q ss_pred CCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHhh
Q 013210 399 ELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 399 ~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~~ 440 (447)
....++.+|+|++ . ++.++.++.|.+++++++
T Consensus 345 ---------~~~~~~~iR~s~~-~~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 345 ---------KRFGDRYIRVSFS-IPREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred ---------cCCCCceEEEEeC-CCHHHHHHHHHHHHHHHHHhh
Confidence 0112468999999 6 345555566666665554
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=230.38 Aligned_cols=282 Identities=17% Similarity=0.171 Sum_probs=197.3
Q ss_pred HHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.++++.+|+++ | .+ .+++|+|+++|+..++.+++++||+|+++.|+|+.+...+. ..|.++..++.
T Consensus 76 ~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~ 150 (394)
T PRK05942 76 ASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPL-----IAGAQIYPIIL 150 (394)
T ss_pred HHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCEEEEeec
Confidence 56888888876 3 34 38889999999999999999999999999999999876652 25777777654
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cC--
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR-- 234 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~-- 234 (447)
+ |++++++.+ .+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..+.++. ..
T Consensus 151 ~~~~~~~~d~~~l~~~~-~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~ 229 (394)
T PRK05942 151 KPENDWLIDLSSIPEEV-AQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIP 229 (394)
T ss_pred CCccCCccCHHHHHHhc-cccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCC
Confidence 2 688998888 678999999999999999997 7788999999999999999986554321 11
Q ss_pred --CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC-cHHHHHHHHHHHHH
Q 013210 235 --LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCHRAL 311 (447)
Q Consensus 235 --~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~-~l~~~~~~~~~~~~ 311 (447)
.+..+++.||||.+|.+|.|+ ||++.++++++.+....... ....+...+.++..++...+ .+....+++.++++
T Consensus 230 ~~~~~~i~~~SfSK~~~~~GlRi-G~i~~~~~l~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 307 (394)
T PRK05942 230 GAKDIGVEFHTLSKTYNMAGWRV-GFVVGNRHIIQGLRTLKTNL-DYGIFSALQKAAETALQLPDSYLQQVQERYRTRRD 307 (394)
T ss_pred CccccEEEEecchhccCChhhhe-eeeecCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 135688999999999999999 99999999999888765411 11223333444444443322 34455666788889
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH-hhcccccccccccccCcccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY-LQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~-l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
.+.+.|++.+..+..|. .|.++|+.++.......+... +.. .| +.+..|...
T Consensus 308 ~~~~~L~~~~~~~~~~~-------------------~~~f~~~~~~~~~~~~~~~~~~l~~---~g-V~v~~g~~f---- 360 (394)
T PRK05942 308 FLIQGLGELGWNIPPTK-------------------ATMYLWVPCPVGMGSTDFALNVLQK---TG-VVVTPGNAF---- 360 (394)
T ss_pred HHHHHHHHCCCeecCCC-------------------eeeEEEEECCCCCCHHHHHHHHHHH---CC-EEEeCChhh----
Confidence 99999988765543221 345888988732223344443 333 23 344434211
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
. ....+++|||++ .+ .+.|.++|+++.+
T Consensus 361 ----~-------------~~~~~~iRis~~-~~-----~~~l~~~l~~l~~ 388 (394)
T PRK05942 361 ----G-------------EGGEGYVRISLI-AD-----CDRLGEALDRLKQ 388 (394)
T ss_pred ----C-------------cCCCCeEEEEec-CC-----HHHHHHHHHHHHH
Confidence 0 012478999999 43 3456666666553
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=232.06 Aligned_cols=281 Identities=15% Similarity=0.189 Sum_probs=202.3
Q ss_pred ccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 93 YSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
..++..+....+++.+|+.+|.+ .+++|+|+++++.+++++++++| |+|+++.|+|+.+...++ ..|.++..
T Consensus 51 ~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~-----~~G~~~~~ 125 (351)
T PRK01688 51 LNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVEIRT 125 (351)
T ss_pred cccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHH-----HcCCEEEE
Confidence 34456666689999999999864 49999999999999999998887 899999999998876652 26778777
Q ss_pred eCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc------cCCC
Q 013210 170 VDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP------ARLG 236 (447)
Q Consensus 170 v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~------~~~g 236 (447)
++.+ |++++++++ . ++++|++++||||||.+.+.++|.++++. .++++|+||+|..+.... ...+
T Consensus 126 v~~~~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~ 203 (351)
T PRK01688 126 VPTLDNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYP 203 (351)
T ss_pred eecCCCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCC
Confidence 7653 788998877 3 79999999999999999987777777653 268999999996654221 1235
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc--CCcHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFA 314 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~ 314 (447)
..+++.||||.||.+|.|+ ||+++++++++.+.+.+.. ...+.+.+.+|..++.. .+.+.++.+.+.++++++.
T Consensus 204 n~iv~rSfSK~~glaGlRi-Gy~i~~~~~i~~l~~~~~~---~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~ 279 (351)
T PRK01688 204 HLVILRTLSKAFALAGLRC-GFTLANEEVINLLLKVIAP---YPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLI 279 (351)
T ss_pred CEEEEecchHhhcCHHHHH-hHHhCCHHHHHHHHhccCC---CCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999 9999999999888876542 22233334444444432 1345566677788899999
Q ss_pred HHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccc
Q 013210 315 RRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 393 (447)
Q Consensus 315 ~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a 393 (447)
+.|++++. ...+|. .+.++++.+++ ...+.+.|... | +.+..++..
T Consensus 280 ~~L~~~~~~~~~~ps-------------------~~nfi~~~~~~---~~~l~~~L~~~---g-i~vr~~~~~------- 326 (351)
T PRK01688 280 AALKEIPCVEQVFDS-------------------ETNYILARFTA---SSAVFKSLWDQ---G-IILRDQNKQ------- 326 (351)
T ss_pred HHHHhCCCCCeECCC-------------------CCcEEEEEcCC---HHHHHHHHHHC---C-eEEEECCCc-------
Confidence 99988743 334443 35588888863 35666666642 3 344322110
Q ss_pred cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 394 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 394 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
.|. ++++|||+| . .+..+.|.++|
T Consensus 327 --------------~~~-~~~iRis~~-~---~~e~~~l~~al 350 (351)
T PRK01688 327 --------------PGL-SNCLRITIG-T---REECQRVIDAL 350 (351)
T ss_pred --------------CCC-CCeEEEeCC-C---HHHHHHHHHhh
Confidence 022 478999999 3 35556666555
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=229.73 Aligned_cols=244 Identities=18% Similarity=0.199 Sum_probs=176.7
Q ss_pred chHHHHHHHHHHHhC--------C--CeEEEeCChHHHHHHHHHHhcCCCC-eEEEeCCCchhHHHHHHhhcCcccCeeE
Q 013210 99 PTVLNLSRQMAALEG--------T--EAAYCTASGMSAISSVLMQLCSSGG-HVVAARTLYGGTHALLTHFFPRACNITT 167 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g--------~--~~~~~tsggt~A~~~al~~l~~~gd-~Vi~~~~~y~~~~~~~~~~~~~~~g~~~ 167 (447)
+....||+.||++++ . +++++|+|+++++..++.+++.+|| +|+++.|+|+.+...++ ..|.++
T Consensus 66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~-----~~g~~~ 140 (374)
T PRK02610 66 GGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQ-----TLGIPV 140 (374)
T ss_pred CchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHH-----HcCCEE
Confidence 344679999999986 3 3499999999999988888777775 89999999999887773 367787
Q ss_pred EEeCCC------CHHHHHHhhcc---CCceEEEEEcCCCCCccccCHHHHHHHHH-hcCCEEEEeCCCCCCCCCc-----
Q 013210 168 TFVDIS------DHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAH-DKGVTVVVDNTFSPLVLSP----- 232 (447)
Q Consensus 168 ~~v~~~------d~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~l~~I~~la~-~~gi~livD~~~~~~~~~~----- 232 (447)
..++.+ |+++|++++.. +++++|++++||||||.+.+.+++.++++ .+++++|+||+|..+....
T Consensus 141 ~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~ 220 (374)
T PRK02610 141 VRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGEL 220 (374)
T ss_pred EEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHH
Confidence 777643 78999988833 58999999999999999998776666553 2489999999996653221
Q ss_pred cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013210 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALI 312 (447)
Q Consensus 233 ~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~ 312 (447)
......+++.||||.+|.+|.|+ ||+++++++++.+...+.. ...+.+.+.++..++...+.....++++.+.++.
T Consensus 221 ~~~~~~ivi~SfSK~~g~~GlRi-G~~v~~~~l~~~l~~~~~~---~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~ 296 (374)
T PRK02610 221 AQHPNWVILRTFSKAFRLAAHRV-GYAIGHPELIAVLEKVRLP---YNLPSFSQLAAQLALEHRQELLAAIPEILQERDR 296 (374)
T ss_pred hcCCCEEEEEecchhccCcccce-eeeecCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 11234688999999999999999 9999999999988776531 2223444555544444333344445555556777
Q ss_pred HHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 313 FARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 313 l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
+.+.|++++. .+ .|. .|.++++.++...+...+.+.|..
T Consensus 297 l~~~L~~~~~~~~-~p~-------------------~g~f~~~~l~~~~~~~~~~~~l~~ 336 (374)
T PRK02610 297 LYQALQELPQLRV-WPS-------------------AANFLYLRLSQDAALAALHQALKA 336 (374)
T ss_pred HHHHHHhCCCcEe-CCC-------------------cceEEEEeCCCCCCHHHHHHHHHH
Confidence 8888877633 32 232 466899998743335667777754
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=231.65 Aligned_cols=241 Identities=19% Similarity=0.214 Sum_probs=178.1
Q ss_pred HHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.++|+.+++++ | .+ ++++|+|+++|+.+++..++++||+|+++.|.|+.+...+. ..|.++..++.
T Consensus 66 ~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~ 140 (387)
T PRK08912 66 PELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIR-----RAGGVPRLVRL 140 (387)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEec
Confidence 56788888764 3 34 79999999999999999999999999999999998877663 25777776654
Q ss_pred C------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------c---C
Q 013210 173 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A---R 234 (447)
Q Consensus 173 ~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~---~ 234 (447)
+ |++++++.+ .+++++|++++|+||||.+.+ +++|.++|++|++++|+|++|..+.++. . .
T Consensus 141 ~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 219 (387)
T PRK08912 141 EPPHWRLPRAALAAAF-SPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPG 219 (387)
T ss_pred CcccCcCCHHHHHHHh-CccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCC
Confidence 3 689999988 778999999999999999987 6678999999999999999985443321 1 1
Q ss_pred -CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHHHHHH
Q 013210 235 -LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALI 312 (447)
Q Consensus 235 -~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~~~ 312 (447)
.+.++++.|+||.+|.+|.|+ ||+++++++++.+....... ....+...+.++...+.. .+++.+..+++.++++.
T Consensus 220 ~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (387)
T PRK08912 220 MRERTVKIGSAGKIFSLTGWKV-GFVCAAPPLLRVLAKAHQFL-TFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDR 297 (387)
T ss_pred ccCceEEEeechhhccCcCcee-EEEecCHHHHHHHHHHHhhc-cccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 246899999999999999999 99999999998887654411 111222223333333332 23345566778899999
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC---HHHHHHHHHHh
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYL 369 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~---~~~~~~l~~~l 369 (447)
+.+.|++.+..+..|. .|.++|+.++. ......+.+.+
T Consensus 298 l~~~L~~~g~~~~~~~-------------------g~~~l~~~l~~~~~~~~~~~~~~~l 338 (387)
T PRK08912 298 LAAGLRRIGFPVLPSQ-------------------GTYFLTVDLAPLGLAEDDVAFCRRL 338 (387)
T ss_pred HHHHHHhCCCcccCCC-------------------cceEEEecccccCCCCCHHHHHHHH
Confidence 9999998765543221 35578888863 12345676665
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=228.77 Aligned_cols=253 Identities=20% Similarity=0.254 Sum_probs=182.4
Q ss_pred HHHHHHHHHHH----hCC----C-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAAL----EGT----E-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l----~g~----~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.++++ .|. + .+++|+|+++|+.+++.+++.+||+|++..|.|+.+...+. ..|.++..++
T Consensus 63 ~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~-----~~g~~~~~~~ 137 (387)
T PRK07777 63 IPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIA-----MAGAHRVPVP 137 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HCCCEEEEee
Confidence 35677777765 453 2 59999999999999999999999999999999998876663 2455555554
Q ss_pred C--------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cC
Q 013210 172 I--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR 234 (447)
Q Consensus 172 ~--------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~ 234 (447)
. .|+++|++++ ++++++|++++|+||||.+.+ +++|.++|+++++++|+|++|..+.+.. ..
T Consensus 138 ~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~ 216 (387)
T PRK07777 138 LVPDGRGFALDLDALRAAV-TPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLAT 216 (387)
T ss_pred cCCccCCCcCCHHHHHHhc-CcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhh
Confidence 3 2789999988 678999999999999999975 7788999999999999999996544321 11
Q ss_pred ----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHHH
Q 013210 235 ----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHR 309 (447)
Q Consensus 235 ----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~ 309 (447)
.+.++++.|+||.+|.+|.|+ ||+++++++++.+....... ....+++.+.++...+.. .+++....+.+.++
T Consensus 217 ~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 294 (387)
T PRK07777 217 LPGMRERTVTISSAAKTFNVTGWKI-GWACGPAPLIAAVRAAKQYL-TYVGGAPFQPAVAHALDHEDAWVAALRDSLQAK 294 (387)
T ss_pred CCCCcCcEEEEeechhhccCcCcee-EEEecCHHHHHHHHHHHhhc-ccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 247899999999999999999 99999999988887655411 123334444344333432 23455556778999
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhccccccccccccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
++.+.+.|++.+.++..|. .|.++|+.++. ......|.+.|.. +.| +.+..|
T Consensus 295 ~~~l~~~L~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~~~~~~~~~l~~--~~g-v~v~pg 348 (387)
T PRK07777 295 RDRLAAGLAEAGFEVHDSA-------------------GTYFLCADPRPLGYDDGTEFCRALPE--RVG-VAAIPM 348 (387)
T ss_pred HHHHHHHHHhCCCCccCCC-------------------cceEEEecccccCCCCHHHHHHHHHH--hCC-EEEeCc
Confidence 9999999988765543221 34577777642 1235677777742 123 455555
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=229.91 Aligned_cols=217 Identities=20% Similarity=0.253 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
...+|+.+|+++ | .+++++|+|+++|+..++.+++++||+|+++.|+|..+...+. ..|.++..++.
T Consensus 70 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~ 144 (393)
T PRK05764 70 IPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVK-----LAGGVPVFVPT 144 (393)
T ss_pred hHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHH-----HcCCEEEEEec
Confidence 467888888886 2 2459999999999999999999999999999999998877662 26778877765
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----------
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---------- 232 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---------- 232 (447)
+ |++++++.+ ++++++|++++|+||||.+.+ +++|+++|++||+++++|++|..+.++.
T Consensus 145 ~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 223 (393)
T PRK05764 145 GEENGFKLTVEQLEAAI-TPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLS 223 (393)
T ss_pred CcccCCcCCHHHHHHhh-CccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcC
Confidence 3 578999988 778999999999999999975 7789999999999999999996553311
Q ss_pred -cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHHHH
Q 013210 233 -ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRA 310 (447)
Q Consensus 233 -~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~ 310 (447)
...+.++++.|+||.+|.+|.|+ ||+++++++++.+....... ....+.+.+.++...+.. .+++....+++.+++
T Consensus 224 ~~~~~~~i~~~s~SK~~~~~G~Ri-G~i~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 301 (393)
T PRK05764 224 PELRDRTITVNGFSKAYAMTGWRL-GYAAGPKELIKAMSKLQSHS-TSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERR 301 (393)
T ss_pred CCCcCCEEEEecCcccccCcccee-EEEecCHHHHHHHHHHHhhc-ccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11257899999999999999999 99999999998887665411 112222333333334432 233445566678888
Q ss_pred HHHHHHHHhC-CCeee
Q 013210 311 LIFARRMKKL-GLKVL 325 (447)
Q Consensus 311 ~~l~~~L~~~-~~~v~ 325 (447)
+.+.+.|+++ +..+.
T Consensus 302 ~~l~~~L~~~~g~~~~ 317 (393)
T PRK05764 302 DLMVDGLNEIPGLECP 317 (393)
T ss_pred HHHHHHHhhCCCCccc
Confidence 8899999887 44443
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=229.65 Aligned_cols=240 Identities=15% Similarity=0.141 Sum_probs=177.8
Q ss_pred hHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 100 TVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
...++++.+|++++. +.+++|+|+++++.+++++++++||+|++++|+|+.+...+. ..|.++..++.+
T Consensus 61 ~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~ 135 (353)
T PRK05387 61 NADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVYAG-----LYGIPYEEIPLDDDFS 135 (353)
T ss_pred cHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHH-----HcCCEEEEeecCCCCC
Confidence 347899999999986 459999999999999999999999999999999987766552 257777777653
Q ss_pred -CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc-CCEEEEeCCCCCCCCCc-----cCCCCeEEEeCCCc
Q 013210 174 -DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTFSPLVLSP-----ARLGADVVVHSISK 246 (447)
Q Consensus 174 -d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~-gi~livD~~~~~~~~~~-----~~~g~di~~~S~sK 246 (447)
|++++++ ++++|++++||||||.+.+.+++.++++.+ ++++|+||+|..+.... .....++++.|+||
T Consensus 136 ~d~~~l~~-----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK 210 (353)
T PRK05387 136 IDVEDYLR-----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSK 210 (353)
T ss_pred CCHHHHHh-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhH
Confidence 5666542 457899999999999999999999999875 99999999985543211 12356899999999
Q ss_pred cccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013210 247 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY 326 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~ 326 (447)
.+|.+|.|+ ||+++++++++.+...+........+.+.+.++..++...+.+....+++.++++.+.+.|++++..+ .
T Consensus 211 ~~~~~GlR~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~-~ 288 (353)
T PRK05387 211 SRSLAGLRV-GFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEALGFEV-L 288 (353)
T ss_pred hhcchhhhc-eeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeE-C
Confidence 999999999 99999999998887765411101122233333434443333455566778888999999999886654 2
Q ss_pred CCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 327 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
|. .|+++++.+++. ....+.+.|..
T Consensus 289 ~~-------------------~~~~~~~~~~~~-~~~~~~~~l~~ 313 (353)
T PRK05387 289 PS-------------------KANFVFARHPSH-DAAELAAKLRE 313 (353)
T ss_pred CC-------------------cCcEEEEECCCC-CHHHHHHHHHH
Confidence 32 345888887642 24567777764
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-26 Score=225.28 Aligned_cols=310 Identities=18% Similarity=0.184 Sum_probs=215.2
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHH
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHA 153 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~ 153 (447)
+.+.+.+.. ++++-+.+.+.....+..+++++.+++++|++..+++++|++++..++++++++||+|+++.+.|+++..
T Consensus 22 ~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~ 100 (349)
T cd06454 22 EAAKEALDK-YGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIID 100 (349)
T ss_pred HHHHHHHHH-hCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHH
Confidence 556665543 4433233333334577789999999999999888889999999999998888999999999999998876
Q ss_pred HHHhhcCcccCeeEEEeCCCCHHHHHHhhcc----CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-C-
Q 013210 154 LLTHFFPRACNITTTFVDISDHEMVNSAIVQ----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P- 227 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~----~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~- 227 (447)
.+. . .|.++.+++..|.++++++++. +++++|++++++||+|.+.|+++|+++|+++|+++|+|++|+ +
T Consensus 101 ~~~----~-~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~ 175 (349)
T cd06454 101 GIR----L-SGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGV 175 (349)
T ss_pred HHH----H-cCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccc
Confidence 652 2 5788887777788899988843 457899999999999999999999999999999999999984 2
Q ss_pred CCC--------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHH---HHHHHHccC
Q 013210 228 LVL--------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK---VAFELSERI 296 (447)
Q Consensus 228 ~~~--------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~---~a~~~~~~~ 296 (447)
+.. .....++|+++.|+||.++++| |+++.++++++.+....... ..+.+..+. ++...+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g----G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~~~ 249 (349)
T cd06454 176 YGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG----GYIAGSKELIDYLRSYARGF--IFSTSLPPAVAAAALAALEVL 249 (349)
T ss_pred cCCCCCChhhhccccccCcEEEeechhhhcccC----CEEECCHHHHHHHHHhchhh--hccCCCCHHHHHHHHHHHHHH
Confidence 211 1123478999999999999743 88888888887776543211 122222222 222223222
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013210 297 PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 376 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g 376 (447)
.....+.+++.++++.+.+.|.+.+..+..+. .+.++++.++......++.+.|... |
T Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~L~~~---g 307 (349)
T cd06454 250 QGGPERRERLQENVRYLRRGLKELGFPVGGSP-------------------SHIIPPLIGDDPAKAVAFSDALLER---G 307 (349)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCcccCCC-------------------CCcEEEEeCCChHHHHHHHHHHHhC---C
Confidence 22345667788899999999988765433221 1224555454334456777777752 3
Q ss_pred cccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 377 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 377 ~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.++.++. +.. ....+.|||+++ ...+++.++.+.++|+++
T Consensus 308 -I~~~~~~~------~~~--------------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 308 -IYVQAIRY------PTV--------------PRGTARLRISLS-AAHTKEDIDRLLEALKEV 348 (349)
T ss_pred -ceEEEecC------Ccc--------------CCCCCeEEEEEe-CCCCHHHHHHHHHHHHHh
Confidence 34333211 000 011478999999 888888899988888754
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=228.81 Aligned_cols=278 Identities=18% Similarity=0.215 Sum_probs=202.0
Q ss_pred chHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 99 PTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
+...++++.+|++++.+ .+++|+|+++++.+++.+++.+||+|+++.|.|..+...+. ..|.++..++.+
T Consensus 63 ~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~i~~~~~ 137 (356)
T PRK04870 63 PRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAK-----LAGLEFVGVPLTAD 137 (356)
T ss_pred CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHH-----HcCCEEEEecCCCC
Confidence 34578999999999852 59999999999999999989999999999999998876652 368888887654
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cCCCCeEEEeCCC
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVVVHSIS 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~-----~~~g~di~~~S~s 245 (447)
|++++++++...++++|++++|+||||.+.+.+++.++++..++++|+|++|..+.... ...+..+++.|+|
T Consensus 138 ~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~S 217 (356)
T PRK04870 138 FTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVS 217 (356)
T ss_pred CCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecch
Confidence 78999998844689999999999999999999888888877688999999995554321 1234679999999
Q ss_pred ccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC-CCee
Q 013210 246 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKV 324 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~v 324 (447)
| ++.+|.|+ ||+++++++++.+...+.. ...+.+.+.++..++...+.+....+++.++++.+.+.|++. +..+
T Consensus 218 K-~~~~GlRi-G~~i~~~~~i~~~~~~~~~---~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 292 (356)
T PRK04870 218 K-LGLAGLRL-GYLAGHPAWIAELDKVRPP---YNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPGVTV 292 (356)
T ss_pred h-hhhHHHhh-hhhhCCHHHHHHHHHccCC---CcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 9 89999999 9999999999888765531 122233344444444433345556677888999999999876 3332
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHH
Q 013210 325 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404 (447)
Q Consensus 325 ~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~ 404 (447)
.|. .|+++++.+++ ...+.+.|... | +.+..|... .
T Consensus 293 -~~~-------------------~~~~~~~~~~~---~~~~~~~l~~~---g-I~v~~~~~f--------~--------- 328 (356)
T PRK04870 293 -FPS-------------------AANFILVRVPD---AAAVFDGLKTR---G-VLVKNLSGM--------H--------- 328 (356)
T ss_pred -CCC-------------------CCeEEEEECCC---HHHHHHHHHHC---C-EEEEECCCC--------C---------
Confidence 222 35689999873 34566666652 3 444433110 0
Q ss_pred HHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 405 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 405 ~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+..++++|||++ . .+..+.|.++|++
T Consensus 329 ----~~~~~~iRis~~-~---~~~~~~l~~al~~ 354 (356)
T PRK04870 329 ----PLLANCLRVTVG-T---PEENAQFLAALKA 354 (356)
T ss_pred ----CCCCCeEEEeCC-C---HHHHHHHHHHHHH
Confidence 112478999999 3 3445566666654
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=230.63 Aligned_cols=229 Identities=16% Similarity=0.175 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHhC-------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-
Q 013210 101 VLNLSRQMAALEG-------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI- 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g-------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~- 172 (447)
..++++.+|++++ .+.+++|+|+++|+.+++.+++++||+|+++.|+|..+...+. ..|+++..++.
T Consensus 75 ~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~-----~~g~~v~~~~~~ 149 (401)
T TIGR01264 75 ALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAE-----SMGIEVKLYNLL 149 (401)
T ss_pred CHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHH-----HcCCEEEEeecC
Confidence 4678999999986 3569999999999999999999999999999999998876663 26777776654
Q ss_pred ------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cCC--
Q 013210 173 ------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL-- 235 (447)
Q Consensus 173 ------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~~-- 235 (447)
.|++++++++ +.++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.++. ..+
T Consensus 150 ~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 228 (401)
T TIGR01264 150 PDKSWEIDLKQLESLI-DEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSS 228 (401)
T ss_pred CccCCCCCHHHHHHHh-ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCC
Confidence 2789999888 667899999999999999986 7788999999999999999996654321 111
Q ss_pred -CCeEEEeCCCccccCCCCeeEEEEEcCh------HHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc--CCcHHHHHHHH
Q 013210 236 -GADVVVHSISKFISGGADIIAGAVCGPA------NLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEH 306 (447)
Q Consensus 236 -g~di~~~S~sK~~g~~g~~igG~l~~~~------~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~ 306 (447)
...+++.||||.|+.+|.|+ ||+++++ ++++.+...... ....+.+.+.++..++.. .+++....+++
T Consensus 229 ~~~vi~~~SfSK~~~~~GlRi-G~iv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~ 305 (401)
T TIGR01264 229 TVPILSCGGLAKRWLVPGWRL-GWIIIHDRRGILRDIRDGLVKLSQR--ILGPCTIVQGALPSILLRTPQEYFDGTLSVL 305 (401)
T ss_pred CCcEEEEccCcccCCCccceE-EEEEecCcchhHHHHHHHHHHHhhc--cCCCCcHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 23689999999999999999 9998763 344444433220 012234444444444432 23455666778
Q ss_pred HHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 307 CHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+++++.+.+.|++++ ..+..|. .|.++++.++
T Consensus 306 ~~~r~~l~~~L~~~~~~~~~~p~-------------------~g~f~~~~~~ 338 (401)
T TIGR01264 306 ESNAMLCYGALAAVPGLRPVMPS-------------------GAMYMMVGIE 338 (401)
T ss_pred HHHHHHHHHHHHhCCCCcccCCC-------------------eeeEEEEEec
Confidence 889999999998863 2333332 5678899875
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=232.45 Aligned_cols=242 Identities=16% Similarity=0.182 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhC--------------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee
Q 013210 101 VLNLSRQMAALEG--------------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 166 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 166 (447)
..++++.||++++ .+.+++|+|+++|+.+++.+++++||+|+++.|+|+.+...+. ..|.+
T Consensus 77 ~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~ 151 (412)
T PTZ00433 77 SPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCK-----AYGIE 151 (412)
T ss_pred cHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHH-----HcCCE
Confidence 4678888888865 2469999999999999999999999999999999999877763 25777
Q ss_pred EEEeCCC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013210 167 TTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---- 232 (447)
Q Consensus 167 ~~~v~~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---- 232 (447)
+..++.+ |+++|++++ ++++++|++++||||||.+.+ +++|+++|+++|+++|+|++|..+.++.
T Consensus 152 ~~~i~~~~~~~~~~d~~~l~~~~-~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~ 230 (412)
T PTZ00433 152 MRFYNCRPEKDWEADLDEIRRLV-DDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFT 230 (412)
T ss_pred EEEEecCccccCcCCHHHHHHHh-ccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCcc
Confidence 7776542 688999888 678999999999999999876 6778999999999999999996654321
Q ss_pred --cCC---CCeEEEeCCCccccCCCCeeEEEEEc--C----hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-C-CcH
Q 013210 233 --ARL---GADVVVHSISKFISGGADIIAGAVCG--P----ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-I-PHL 299 (447)
Q Consensus 233 --~~~---g~di~~~S~sK~~g~~g~~igG~l~~--~----~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~-~~l 299 (447)
..+ ...+++.||||.+|.+|.|+ ||++. + +++++.+...... ....+.+.+.++...+.. . .++
T Consensus 231 ~~~~~~~~~~~i~~~SfSK~~~~pGlRl-G~~i~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~~ 307 (412)
T PTZ00433 231 SVADFDTTVPRVILGGTAKNLVVPGWRL-GWLLLVDPHGNGGDFLDGMKRLGML--VCGPCSVVQAALGEALLNTPQEHL 307 (412)
T ss_pred chhhccCCCceEEEccchhhcCCCCeeE-EEEEEeCCcccHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHhcCcHHHH
Confidence 111 23588999999999999999 99985 2 3566666554331 122333344444444433 1 335
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHhh
Q 013210 300 GLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYLQ 370 (447)
Q Consensus 300 ~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~l~~~l~ 370 (447)
....++++++++.+.+.|+++ +..+..|. .|.++++.++.. .....+.+.|.
T Consensus 308 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~-------------------gg~f~~~~l~~~~~~~~~~~~~~~~~ll 365 (412)
T PTZ00433 308 EQIVAKLEEGAMVLYNHIGECIGLSPTMPR-------------------GSMFLMSRLDLEKFRDIKSDVEFYEKLL 365 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCC-------------------eeEEEEEEechhhcCCCCCHHHHHHHHH
Confidence 556667888999999999875 33333332 466888888631 12456666664
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-26 Score=226.41 Aligned_cols=217 Identities=21% Similarity=0.311 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++|+.+|+++ | .+ ++++|+|+++|+.+++.+++++||+|+++.|.|+.+...+. ..|.++.+++
T Consensus 67 ~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~ 141 (387)
T PRK07683 67 LLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIR-----LCGAKPVFID 141 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHH-----HcCCEEEEee
Confidence 467888888886 2 24 79999999999999999999999999999999998877763 2688888887
Q ss_pred CC------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccC---
Q 013210 172 IS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR--- 234 (447)
Q Consensus 172 ~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~--- 234 (447)
.+ |.+++++.+ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.+. ...
T Consensus 142 ~~~~~~~~~~~~l~~~~-~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 220 (387)
T PRK07683 142 TRSTGFRLTAEALENAI-TEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPE 220 (387)
T ss_pred cCcccCCCCHHHHHHhc-CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccC
Confidence 54 568899888 678999999999999999986 778899999999999999999655432 111
Q ss_pred -CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHHHHHH
Q 013210 235 -LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALI 312 (447)
Q Consensus 235 -~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~~~ 312 (447)
.+.++++.|+||.+|.+|.|+ ||+++++++++.+..... ......+.+.+.++..++.. ..++....+++.++++.
T Consensus 221 ~~~~vi~~~s~SK~~~~pGlRi-G~i~~~~~l~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 298 (387)
T PRK07683 221 MREKTIVINGLSKSHSMTGWRI-GFLFAPSYLAKHILKVHQ-YNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDY 298 (387)
T ss_pred CcCCeEEEeeccccccCcccee-EEEEcCHHHHHHHHHHHH-hccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 146799999999999999999 999999999988876543 11122233444444444433 23344455667888899
Q ss_pred HHHHHHhCCCeee
Q 013210 313 FARRMKKLGLKVL 325 (447)
Q Consensus 313 l~~~L~~~~~~v~ 325 (447)
+.+.|++.+..+.
T Consensus 299 ~~~~l~~~~~~~~ 311 (387)
T PRK07683 299 VYNRLISMGLDVE 311 (387)
T ss_pred HHHHHHHcCCccc
Confidence 9999988755443
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=230.64 Aligned_cols=243 Identities=16% Similarity=0.210 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
...+|+.+|+++ | .+++++|+|+++|+.+++.+++++||+|++++|+|.++...+. ..|.++..++.
T Consensus 72 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~ 146 (391)
T PRK08361 72 IPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAK-----IAEAKPIRIPL 146 (391)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHH-----HcCCEEEEEec
Confidence 467888888886 3 2569999999999999999999999999999999999877663 25777777654
Q ss_pred -------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------c--C
Q 013210 173 -------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A--R 234 (447)
Q Consensus 173 -------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~--~ 234 (447)
.|++++++.+ ++++++|++++|+||||.+.| +++|+++|+++++++|+|++|..+.++. . .
T Consensus 147 ~~~~~~~~d~~~l~~~i-~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 225 (391)
T PRK08361 147 REENEFQPDPDELLELI-TKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYA 225 (391)
T ss_pred CCccCCCCCHHHHHHhc-ccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcC
Confidence 2789999988 678999999999999999999 7889999999999999999996654321 1 1
Q ss_pred CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC---cHHHHHHHHHHHHH
Q 013210 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRAL 311 (447)
Q Consensus 235 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~---~l~~~~~~~~~~~~ 311 (447)
...++++.|+||.+|.+|.|+ ||+++++++++.+...... .....+.+.+.++..++.... .+....+.+.++++
T Consensus 226 ~~~~i~~~s~SK~~~~~GlRi-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 303 (391)
T PRK08361 226 PDNTILANSFSKTFAMTGWRL-GFVIAPEQVIKDMIKLHAY-IIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRK 303 (391)
T ss_pred CCCEEEEecCchhcCCcHhhh-hhhccCHHHHHHHHHHHhh-hccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 246899999999999999999 9999999998887665431 111222333444444443322 24555667788889
Q ss_pred HHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhh
Q 013210 312 IFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 370 (447)
Q Consensus 312 ~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~ 370 (447)
.+.+.|++.+ ..+..|. .|.++|+.++. ..+...+...|.
T Consensus 304 ~~~~~L~~~~~~~~~~p~-------------------g~~~~~~~l~~~~~~~~~l~~~l~ 345 (391)
T PRK08361 304 LVLKRLKEMPHIKVFEPK-------------------GAFYVFANIDETGMSSEDFAEWLL 345 (391)
T ss_pred HHHHHHHhCCCCeecCCC-------------------EEEEEEEECCCCCCCHHHHHHHHH
Confidence 9999998763 3443332 34578888863 112455666553
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-26 Score=224.39 Aligned_cols=285 Identities=18% Similarity=0.186 Sum_probs=204.2
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHH
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM 177 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 177 (447)
.+...++++.++++++.+..+++++|++++..++.+++++||+|+++.+.|+.+...+. ..|.++..++..|+++
T Consensus 60 ~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~~ 134 (360)
T TIGR00858 60 SPLHEELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDGCR-----LSGARVRRYRHNDVEH 134 (360)
T ss_pred cHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHH-----hcCCceEEecCCCHHH
Confidence 45678899999999998777777788888888888888999999999999998877662 2577888887789999
Q ss_pred HHHhhcc---CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc-----------cCCCCeEEEeC
Q 013210 178 VNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHS 243 (447)
Q Consensus 178 l~~~i~~---~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~-----------~~~g~di~~~S 243 (447)
|++.++. +++++|++++++|++|.+.|+++|.++|+++|+++|+|++|+.+.+.. ...+.++++.|
T Consensus 135 l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s 214 (360)
T TIGR00858 135 LERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGT 214 (360)
T ss_pred HHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEe
Confidence 9998843 357899999999999999999999999999999999999994322111 11367899999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHH-HHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA-FELSERIPHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a-~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
+||++++.| ||+++++++++.+...........+.......+ ..++..........+++.++++++.+.|++++.
T Consensus 215 ~sK~~~~~g----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 290 (360)
T TIGR00858 215 LSKALGSYG----AYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALGF 290 (360)
T ss_pred chhhhhccC----cEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999754 899999988887764433111111222222222 223332233345667889999999999988765
Q ss_pred eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCH
Q 013210 323 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA 402 (447)
Q Consensus 323 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~ 402 (447)
++. +. .|.++++.++.......+.+.|... | +.+..+.. +..
T Consensus 291 ~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~---g-I~v~~~~~------~~~-------- 332 (360)
T TIGR00858 291 TLM-PS-------------------CTPIVPVIIGDNASALALAEELQQQ---G-IFVGAIRP------PTV-------- 332 (360)
T ss_pred ccC-CC-------------------CCCEEEEEeCCHHHHHHHHHHHHHC---C-eeEeeeCC------CCC--------
Confidence 432 11 3558999987544466788887753 3 34433211 000
Q ss_pred HHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 403 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 403 ~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
.-..+.||||++ ..++++.++.+.++|
T Consensus 333 ------~~~~~~iRis~~-~~~~~~~i~~~l~~l 359 (360)
T TIGR00858 333 ------PAGTSRLRLTLS-AAHTPGDIDRLAEAL 359 (360)
T ss_pred ------CCCCceEEEEEc-CCCCHHHHHHHHHhh
Confidence 011357999999 877888888877765
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=230.02 Aligned_cols=219 Identities=16% Similarity=0.163 Sum_probs=168.6
Q ss_pred CchHHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 98 NPTVLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
.+....+++.+|+++ | .+++++|+|+++++.+++++++++||.|++..|.|+.+...+. ..|.++..
T Consensus 64 ~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~-----~~g~~~~~ 138 (368)
T PRK03317 64 DRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIAR-----GTHTEWVE 138 (368)
T ss_pred CCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----hcCCeeEE
Confidence 334577999999987 3 2469999999999999999999999999999999998877663 25666665
Q ss_pred eCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc----c----CCC
Q 013210 170 VDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----A----RLG 236 (447)
Q Consensus 170 v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~----~----~~g 236 (447)
++.+ |++++++++...++++|++++|+||||.+.+.+++.++++..++++|+||+|..+.+.. . ..+
T Consensus 139 ~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~ 218 (368)
T PRK03317 139 GPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYP 218 (368)
T ss_pred cccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCC
Confidence 5432 78999998844678999999999999999999999999999999999999996653321 1 113
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
..+++.||||.+|.+|.|+ ||+++++++++.+...+. ....+.+.+.++..++...+.+.+..+++.++++.+.+.
T Consensus 219 ~~i~~~SfSK~~g~~GlRi-G~~~~~~~~~~~l~~~~~---~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 294 (368)
T PRK03317 219 RLVVSRTMSKAFAFAGGRL-GYLAAAPAVVDALRLVRL---PYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAW 294 (368)
T ss_pred CEEEEEechhhhccchhhh-hhhhCCHHHHHHHHhcCC---CCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999 999999999988876543 123334444444444444344455566778888889999
Q ss_pred HHhCCCeee
Q 013210 317 MKKLGLKVL 325 (447)
Q Consensus 317 L~~~~~~v~ 325 (447)
|++.+..+.
T Consensus 295 L~~~g~~~~ 303 (368)
T PRK03317 295 LRELGLRVA 303 (368)
T ss_pred HHHCCCEeC
Confidence 988766543
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=229.67 Aligned_cols=238 Identities=19% Similarity=0.167 Sum_probs=174.7
Q ss_pred HHHHHHHHHHh----CC-----C-eEEEeCChHHHHHHHHHHhcCC---CCeEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 102 LNLSRQMAALE----GT-----E-AAYCTASGMSAISSVLMQLCSS---GGHVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 102 ~~l~~~ia~l~----g~-----~-~~~~tsggt~A~~~al~~l~~~---gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
.++++.||+++ |. + .+++|+|+++|+..++++++++ ||.|+++.|.|+.+...+. ..|.++.
T Consensus 68 ~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~ 142 (396)
T PRK09147 68 PALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAAL-----LAGAEPY 142 (396)
T ss_pred HHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHH-----hcCCEEE
Confidence 45777777654 52 3 5899999999999999999999 8999999999998877662 3677888
Q ss_pred EeCCC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------
Q 013210 169 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ 232 (447)
Q Consensus 169 ~v~~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------ 232 (447)
.++.+ |++++++.+ .+++++|++++||||||.+.+ +++|+++|++|++++|+||+|..+.++.
T Consensus 143 ~vp~~~~~~~~~d~~~l~~~~-~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~ 221 (396)
T PRK09147 143 FLNCDPANNFAPDFDAVPAEV-WARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLG 221 (396)
T ss_pred EeccCccccCccCHHHHHHHH-hhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCch
Confidence 77653 678898877 568999999999999999985 6788888999999999999996654321
Q ss_pred -c---------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHH
Q 013210 233 -A---------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 302 (447)
Q Consensus 233 -~---------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~ 302 (447)
. ..+..+++.|+||.++.+|.|+ ||+++++++++.+...+... ....+.+.+.++...+...+++.+.
T Consensus 222 ~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRi-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~q~a~~~~~~~~~~~~~~ 299 (396)
T PRK09147 222 LLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRS-GFVAGDAALLKKFLLYRTYH-GCAMPPAVQAASIAAWNDEAHVREN 299 (396)
T ss_pred hhhhccccCccccccEEEEeccccccCCcccee-eeecCCHHHHHHHHHHhhhc-ccCCCHHHHHHHHHHhcchhHHHHH
Confidence 0 1235699999999999999999 99999999998887655411 1122223333333333333445566
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013210 303 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 369 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l 369 (447)
.+.++++++.+.+.|++. ..+..| ..|.++|+.++. ....+...|
T Consensus 300 ~~~~~~~~~~~~~~L~~~-~~~~~p-------------------~~g~f~~~~~~~--~~~~~~~~l 344 (396)
T PRK09147 300 RALYREKFDAVTPILAPV-LDVQLP-------------------DAGFYLWAKVPG--DDTEFARRL 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCCC-------------------CeeEEEEEECCC--CHHHHHHHH
Confidence 677888888899988774 333222 257799999872 134555555
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=230.24 Aligned_cols=242 Identities=14% Similarity=0.105 Sum_probs=176.7
Q ss_pred HHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.++++.+|+++ | .+ .+++|+|+++++..++..++.+||+|+++.|+|+.+...+. ..|.++..++.
T Consensus 71 ~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-----~~g~~v~~v~~ 145 (405)
T PRK09148 71 PGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFI-----MAGGVIRSVPA 145 (405)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHH-----hcCCEEEEEeC
Confidence 56788888776 3 24 69999999999999999999999999999999999876663 26878877765
Q ss_pred C----CHHHHHHhhc--cCCceEEEEEcCCCCCccccCH---HHHHHHHHhcCCEEEEeCCCCCCCCC------ccCC--
Q 013210 173 S----DHEMVNSAIV--QGRTKVLYFESISNPTLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLS------PARL-- 235 (447)
Q Consensus 173 ~----d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~l---~~I~~la~~~gi~livD~~~~~~~~~------~~~~-- 235 (447)
+ .+++++++++ .+++++|++++||||||.+.+. ++|.++|++||+++|+||+|..+.++ ...+
T Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~ 225 (405)
T PRK09148 146 EPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPG 225 (405)
T ss_pred CCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCC
Confidence 3 3344444442 3678999999999999999985 67889999999999999999654332 1111
Q ss_pred --CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHHH
Q 013210 236 --GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALI 312 (447)
Q Consensus 236 --g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~ 312 (447)
+..+++.||||.+|.+|.|+ ||+++++++++.+...+... ....+.+.+.++..++... .++....+.++++++.
T Consensus 226 ~~~~~i~~~SfSK~~~~pGlR~-G~~v~~~~~i~~l~~~~~~~-~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~ 303 (405)
T PRK09148 226 AKDVTVEFTSMSKTFSMAGWRM-GFAVGNERLIAALTRVKSYL-DYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDV 303 (405)
T ss_pred ccCcEEEEeccccccCCcchhe-eeeeCCHHHHHHHHHHHHHh-ccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999 99999999999887765411 1233444555555555432 3355566678999999
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---HHHHHHHHh
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE---KANRLMNYL 369 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~---~~~~l~~~l 369 (447)
+.+.|++++..+..|. .|.++|+.++... ....+...+
T Consensus 304 l~~~L~~~~~~~~~p~-------------------~g~f~~~~l~~~~~~~~~~~~~~~l 344 (405)
T PRK09148 304 LVESFGRAGWDIPPPA-------------------ASMFAWAPIPEAFRHLGSLEFSKLL 344 (405)
T ss_pred HHHHHHHcCCccCCCC-------------------eeEEEEEECCCccCCCCHHHHHHHH
Confidence 9999988765433232 4668999887321 134555554
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=229.02 Aligned_cols=213 Identities=17% Similarity=0.193 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHhCC--------CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALEGT--------EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g~--------~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++|+.+|++++. +++++|+|+++|+.+++..++++||+|+++.|.|+.+..... ..|.++++++.
T Consensus 96 ~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~-----~~g~~~~~~~~ 170 (430)
T PLN00145 96 LLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAV-----FSGLEVRHFDL 170 (430)
T ss_pred CHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-----HcCCEEEEeeC
Confidence 46789999998742 569999999999999999999999999999999998766552 25777777653
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---c------
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---A------ 233 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---~------ 233 (447)
. |++++++++ +++++++++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.++. .
T Consensus 171 ~~~~~~~~d~~~l~~~~-~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~ 249 (430)
T PLN00145 171 LPERGWEVDLEGVEALA-DENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFG 249 (430)
T ss_pred CcccCCcCCHHHHHHHh-CcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhc
Confidence 1 889999988 788999999999999999998 7788899999999999999996654421 1
Q ss_pred CCCCeEEEeCCCccccCCCCeeEEEEEc--ChHHHHH---HHHHhhhhhhhcC-CCccHHHHHHHHcc--CCcHHHHHHH
Q 013210 234 RLGADVVVHSISKFISGGADIIAGAVCG--PANLVNS---MMDLHQGALMLLG-PTMNPKVAFELSER--IPHLGLRMKE 305 (447)
Q Consensus 234 ~~g~di~~~S~sK~~g~~g~~igG~l~~--~~~~~~~---l~~~~~~~~~~~g-~~~~~~~a~~~~~~--~~~l~~~~~~ 305 (447)
.....+++.|+||.|+.+|+|+ ||++. ++.+++. +...........+ +++.+.++..++.. ...+....++
T Consensus 250 ~~~~vi~~~S~SK~~~~pG~Rl-G~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~ 328 (430)
T PLN00145 250 EVAPVLTLGSISKRWVVPGWRL-GWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGL 328 (430)
T ss_pred ccCcEEEEeccccccCCCCeeE-EEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 1136799999999999999999 99986 4444432 1122111111111 23344444444443 1335666778
Q ss_pred HHHHHHHHHHHHHhC
Q 013210 306 HCHRALIFARRMKKL 320 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~ 320 (447)
++++++.+.+.|+++
T Consensus 329 ~~~~~~~~~~~L~~~ 343 (430)
T PLN00145 329 LKETADICYEKIKEI 343 (430)
T ss_pred HHHHHHHHHHHHhcC
Confidence 889999999999876
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=223.20 Aligned_cols=268 Identities=18% Similarity=0.191 Sum_probs=193.2
Q ss_pred HHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHh
Q 013210 102 LNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSA 181 (447)
Q Consensus 102 ~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~ 181 (447)
..|++.||+.++.+.+++|+|+++++.+++. +.+||+|+++.|+|+.+...+. ..|.++..++.+ +++++
T Consensus 52 ~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~~--~~~gd~v~v~~P~y~~~~~~~~-----~~g~~~~~v~~~---~~~~~ 121 (330)
T PRK05664 52 DGLEAAARAYYGAPQLLPVAGSQAAIQALPR--LRAPGRVGVLSPCYAEHAHAWR-----RAGHQVRELDEA---EVEAA 121 (330)
T ss_pred HHHHHHHHHHhCCCCEEECcCHHHHHHHHHH--ccCCCEEEEcCCChHHHHHHHH-----HcCCeEEEechh---hHhhh
Confidence 6899999999999999999999999998763 5789999999999999988773 368888888754 45565
Q ss_pred hccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC--Ccc---CCCCeEEEeCCCccccCCCC
Q 013210 182 IVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL--SPA---RLGADVVVHSISKFISGGAD 253 (447)
Q Consensus 182 i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~--~~~---~~g~di~~~S~sK~~g~~g~ 253 (447)
+ + +++++++++||||||.+.+ +++|+++|+++|+++|+||+|..+.. ... ..+..+++.||||.+|.+|.
T Consensus 122 ~-~-~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~Gl 199 (330)
T PRK05664 122 L-D-SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGA 199 (330)
T ss_pred h-c-CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCc
Confidence 6 3 6788999999999999997 45666677889999999999954421 111 22456999999999999999
Q ss_pred eeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCc
Q 013210 254 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP 333 (447)
Q Consensus 254 ~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p 333 (447)
|+ ||+++++++++.+...... ...+...+.++..++..........+++.++++.+.+.|++++.+ |. +
T Consensus 200 Ri-G~~v~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~---~~----~ 268 (330)
T PRK05664 200 RL-GFVLAEPALLRALAELLGP---WTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHGLT---PA----G 268 (330)
T ss_pred ce-EEEEeCHHHHHHHHHhcCC---CCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCCCc---cc----C
Confidence 99 9999999999888766441 122333344444444443334445667788899999999887542 11 0
Q ss_pred hhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCC
Q 013210 334 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 413 (447)
Q Consensus 334 ~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~ 413 (447)
|.+.++++.+++ ...+.+.|... | +.|.. + + ..+
T Consensus 269 -------------~~~~f~~~~~~~---~~~~~~~l~~~---g-i~v~~--f-----------------------~-~~~ 302 (330)
T PRK05664 269 -------------GCALFQWVRTED---AAALHEFLARR---G-ILTRL--F-----------------------E-QPA 302 (330)
T ss_pred -------------CcceEEEEecCC---HHHHHHHHHHC---C-eEEEE--C-----------------------C-CCC
Confidence 233467777653 45666666652 3 33321 0 0 136
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 414 LVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 414 ~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
.+|||+| . +.+..+.|.++|+.+.+
T Consensus 303 ~iRis~~-~--~~~~~~~l~~al~~~~~ 327 (330)
T PRK05664 303 SLRFGLP-A--DEADWARLDQALLAYRK 327 (330)
T ss_pred eEEEECC-C--CHHHHHHHHHHHHHHHh
Confidence 8999999 5 34557788888877754
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=224.98 Aligned_cols=220 Identities=22% Similarity=0.285 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHhC----C-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALEG----T-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~g----~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.++++++ . +.+++|+|+++|+.+++++++.+||.|++..|.|+++...++ ..|.++..++
T Consensus 69 ~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~ 143 (391)
T PRK07309 69 LLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVN-----LVGAEIVEID 143 (391)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHH-----HcCCEEEEEe
Confidence 3578888888763 1 469999999999999999999999999999999999877663 2577777776
Q ss_pred CC------CHHHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------c-
Q 013210 172 IS------DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A- 233 (447)
Q Consensus 172 ~~------d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~- 233 (447)
.+ |+++++++++. +++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+.++. .
T Consensus 144 ~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~ 223 (391)
T PRK07309 144 TTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAE 223 (391)
T ss_pred cCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHH
Confidence 42 68899988832 36899999999999999986 7888999999999999999996654421 1
Q ss_pred -CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC-cHHHHHHHHHHHHH
Q 013210 234 -RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCHRAL 311 (447)
Q Consensus 234 -~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~-~l~~~~~~~~~~~~ 311 (447)
..+..+++.|+||.+|.+|.|+ ||+++++++++.+..... ......+.+.+.++..++.... +.....+++.++++
T Consensus 224 ~~~~~~i~~~S~SK~~g~~GlRv-G~~v~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 301 (391)
T PRK07309 224 YLPDQTILINGLSKSHAMTGWRI-GLIFAPAEFTAQLIKSHQ-YLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRD 301 (391)
T ss_pred hccCCEEEEecChhhccCcccee-EEEEeCHHHHHHHHHHHh-hcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Confidence 1245699999999999999999 999999999988876543 2112233444444444444322 23334456788888
Q ss_pred HHHHHHHhCCCeeeCC
Q 013210 312 IFARRMKKLGLKVLYP 327 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p 327 (447)
.+.+.|++++..+..|
T Consensus 302 ~~~~~l~~~~~~~~~p 317 (391)
T PRK07309 302 YIIEKMTDLGFKIIKP 317 (391)
T ss_pred HHHHHHHHCCCeecCC
Confidence 9999998876555433
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=227.11 Aligned_cols=242 Identities=14% Similarity=0.189 Sum_probs=178.4
Q ss_pred HHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-
Q 013210 102 LNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI- 172 (447)
Q Consensus 102 ~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~- 172 (447)
..+++.+|++++ .+++++|+|+++|+.+++.+++.+||+|+++.|.|+.+...+. ..|.++..++.
T Consensus 69 ~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~ 143 (384)
T PRK06348 69 VELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIE-----MVGGKPIILETY 143 (384)
T ss_pred HHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHH-----HcCCEEEEecCC
Confidence 468888887762 3569999999999999999999999999999999999988773 24666666543
Q ss_pred ------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cC----
Q 013210 173 ------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR---- 234 (447)
Q Consensus 173 ------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~~---- 234 (447)
.|+++|++++ ++++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..+.++. ..
T Consensus 144 ~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 222 (384)
T PRK06348 144 EEDGFQINVKKLEALI-TSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGM 222 (384)
T ss_pred cCcCCcCCHHHHHHhh-CcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCC
Confidence 2789999988 678999999999999999986 6788888999999999999996654321 11
Q ss_pred CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc-HHHHHHHHHHHHHHH
Q 013210 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIF 313 (447)
Q Consensus 235 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~-l~~~~~~~~~~~~~l 313 (447)
.+..+++.||||.+|.+|.|+ ||+++++++++.+...+... ....+.+.+.++..++...+. +....+.++++++.+
T Consensus 223 ~~~vi~~~SfSK~~~l~GlRi-G~~v~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~ 300 (384)
T PRK06348 223 PERTITFGSFSKDFAMTGWRI-GYVIAPDYIIETAKIINEGI-CFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYA 300 (384)
T ss_pred cCcEEEEecchhccCCccccc-eeeecCHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 246799999999999999999 99999999988887665421 123344445555444443332 444555678888889
Q ss_pred HHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhh
Q 013210 314 ARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ 370 (447)
Q Consensus 314 ~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~ 370 (447)
.+.|++.+. .+..|. .|.++|+.++. ......+...+.
T Consensus 301 ~~~L~~~~~~~~~~p~-------------------gg~~~~~~~~~~~~~~~~l~~~l~ 340 (384)
T PRK06348 301 YKRIESIPNLSLHPPK-------------------GSIYAFINIKKTGLSSVEFCEKLL 340 (384)
T ss_pred HHHHhcCCCceeccCC-------------------eeEEEEEecccCCCCHHHHHHHHH
Confidence 999987632 333221 35577888862 222455665553
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=229.93 Aligned_cols=278 Identities=15% Similarity=0.193 Sum_probs=194.7
Q ss_pred chHHHHHHHHHHHhCCC--eEEE-eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 99 PTVLNLSRQMAALEGTE--AAYC-TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~-tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
+...++++.+|+++|.+ .+++ ++|+++++..+++.++++||+|+++.|.|+.+...++ ..|.++..++.+
T Consensus 69 ~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~~~~~~~ 143 (361)
T PRK00950 69 PDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAK-----AHGAKPVYAKREED 143 (361)
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEeecCCC
Confidence 33478999999999874 4777 6777888999998888999999999999988766552 257787777532
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC-c----cCCCCeEEEeCCC
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS-P----ARLGADVVVHSIS 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~-~----~~~g~di~~~S~s 245 (447)
|++++++.+ ++++++|++++|+||||.+.|.+++.++|+++|+++|+|++|..+... . ...+..+++.|+|
T Consensus 144 ~~~~~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~S 222 (361)
T PRK00950 144 FSLDVDSVLNAI-TEKTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFS 222 (361)
T ss_pred CCcCHHHHHHHh-ccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeeh
Confidence 789999988 678999999999999999999999999999999999999999554311 1 1224568899999
Q ss_pred ccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013210 246 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL 325 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~ 325 (447)
|.+|.+|.|+ ||+++++++++.++..... ...+.+.+..+...+...+.+....+++.++++++.+.|. ..+
T Consensus 223 K~~g~~GlRi-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~---~~~- 294 (361)
T PRK00950 223 KVFGLAGLRI-GYGFVPEWLIDYYMRAKTP---FSLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP---FKV- 294 (361)
T ss_pred HhhcCchhhc-chhcCCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC---eeE-
Confidence 9999999999 9999999998888766541 1223333333334443333344444555666666666654 222
Q ss_pred CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHH
Q 013210 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 405 (447)
Q Consensus 326 ~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~ 405 (447)
+|. .|.++++.++.. +...+.+.|... | +.+..|... +
T Consensus 295 ~~~-------------------~~~~i~~~~~~~-~~~~~~~~l~~~---g-v~v~~~~~f-----~------------- 332 (361)
T PRK00950 295 YPS-------------------EANFVLVDVTPM-TAKEFCEELLKR---G-VIVRDCTSF-----R------------- 332 (361)
T ss_pred CCC-------------------cceEEEEECCCC-CHHHHHHHHHHC---C-EEEeeCCcc-----C-------------
Confidence 221 345888888532 356777777652 3 344433110 0
Q ss_pred HhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 406 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 406 ~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..+++||||++ . .+.++.+.++|+++
T Consensus 333 ---~~~~~~lRis~~-~---~~~~~~l~~~L~~i 359 (361)
T PRK00950 333 ---GLGDYYIRVSIG-T---FEENERFLEILKEI 359 (361)
T ss_pred ---CCCCCeEEEECC-C---HHHHHHHHHHHHHH
Confidence 123578999999 3 23466666666554
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=226.36 Aligned_cols=275 Identities=17% Similarity=0.179 Sum_probs=197.0
Q ss_pred HHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----C
Q 013210 102 LNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----D 174 (447)
Q Consensus 102 ~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d 174 (447)
..+++.+|+++|.+ .+++|+|+++++..++.+++++||+|++..|+|+.+...+. ..|.++..++.+ |
T Consensus 74 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~ 148 (371)
T PRK05166 74 RALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPT-----MMGARVERVTVTPDLGFD 148 (371)
T ss_pred HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCeEEEeecCCCCCCC
Confidence 47999999999864 59999999999999999999999999999999998876652 267888877654 7
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc-----c----C-CCCeEEEe
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP-----A----R-LGADVVVH 242 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~-----~----~-~g~di~~~ 242 (447)
++++++++ ++++++|++++|+||||.+++.+++.++++. +++++|+|++|..+.... . . ....+++.
T Consensus 149 ~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~ 227 (371)
T PRK05166 149 LDALCAAV-ARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLR 227 (371)
T ss_pred HHHHHHhh-hcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEe
Confidence 89999988 6788999999999999999998777776653 488999999995544221 0 1 13578999
Q ss_pred CCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 243 SISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
||||.+|.+|.|+ ||++. ++++++.+...+.. ...+.+.+.++...+...+++....+.+.++++.+.+.|++++
T Consensus 228 SfSK~~~l~GlRi-G~~i~~~~~l~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g 303 (371)
T PRK05166 228 TFSKAYGLAGLRV-GYGLVSDPELVGLLDRVRTP---FNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEMG 303 (371)
T ss_pred echHhhhcchhhe-eeeecCCHHHHHHHHHhccC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 9999999999999 99765 77888887765431 2223333334444443334455566778888899999999876
Q ss_pred CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCC
Q 013210 322 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 401 (447)
Q Consensus 322 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~ 401 (447)
..+ .|. .|.++|+.++.. ...+.+.|... | +.+..|..
T Consensus 304 ~~~-~p~-------------------~g~fl~~~~~~~--~~~l~~~l~~~---g-i~v~p~~~---------------- 341 (371)
T PRK05166 304 YRI-APS-------------------RANFLFFDARRP--ASAVAEALLRQ---G-VIVKPWKQ---------------- 341 (371)
T ss_pred Cee-CCC-------------------cCCEEEEeCCCC--HHHHHHHHHHC---C-eEEecCCC----------------
Confidence 543 232 356888887532 35666666642 3 34443310
Q ss_pred HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 402 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 402 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+ .++++|||++ . .+..+.|.++|+.+
T Consensus 342 ------~~-~~~~iRi~~~-~---~~~~~~l~~~l~~i 368 (371)
T PRK05166 342 ------PG-FETFIRVSIG-S---PEENDHFVAALDKV 368 (371)
T ss_pred ------CC-CCCeEEEEcC-C---HHHHHHHHHHHHHH
Confidence 01 1478999999 4 23355566666554
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=229.98 Aligned_cols=287 Identities=20% Similarity=0.222 Sum_probs=208.0
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
..|++.+++.+ | .++|++|+|+++|+.++++.++++||.|++.+|+|++....++ ..|.++..|+.|
T Consensus 135 ~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~-----~~g~~~~~vp~d 209 (459)
T COG1167 135 PELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALE-----ALGARVIPVPVD 209 (459)
T ss_pred HHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHH-----HcCCcEEecCCC
Confidence 45666666654 3 2569999999999999999999999999999999999998884 368888888776
Q ss_pred ----CHHHHHHhhccCCceEEEEE-cCCCCCccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCCcc---------CCC
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFE-SISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLSPA---------RLG 236 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~-~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~~~---------~~g 236 (447)
|+++|++.+++.++++++++ +.+||||.+++++ +|.++|++||+++|.|+.|+.+.++.. ..+
T Consensus 210 ~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~ 289 (459)
T COG1167 210 EDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPG 289 (459)
T ss_pred CCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCC
Confidence 89999999965678999886 5689999999864 899999999999999999977765422 127
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc-c--CCcHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-R--IPHLGLRMKEHCHRALIF 313 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~--~~~l~~~~~~~~~~~~~l 313 (447)
.+++++||||.+. ||.|+ ||+++++++++.+...+.. ....++...+...+..+. + .+++....+.+.++++.+
T Consensus 290 rViy~gSFSK~l~-PglRl-G~vv~p~~~~~~~~~~k~~-~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l 366 (459)
T COG1167 290 RVIYLGSFSKTLA-PGLRL-GYVVAPPELIEKLLRLKQA-ADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDAL 366 (459)
T ss_pred CEEEEeeehhhcc-cccce-eeeeCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999 89999 9999999999988776652 223334444443333333 2 133444555688999999
Q ss_pred HHHHHhCCC---eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc-cCccccc
Q 013210 314 ARRMKKLGL---KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL-GYYETLM 389 (447)
Q Consensus 314 ~~~L~~~~~---~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~-G~~~s~~ 389 (447)
.+.|.++.. .+..|. .|.++|+.++...+...+...+... | +.+.. |.....
T Consensus 367 ~~~L~~~~~~~~~~~~p~-------------------gG~flwl~l~~~~~~~~l~~~a~~~---g-v~i~~~g~~f~~- 422 (459)
T COG1167 367 LEALAEYLPELATWTRPE-------------------GGLFLWLELPEGIDARELLAAALEK---G-VVVTPLGSAFSA- 422 (459)
T ss_pred HHHHHHhCCCCeeeecCC-------------------ceEEEEEEcCCCCCHHHHHHHHHHC---C-CEEEcCCccccC-
Confidence 999988742 444443 5779999999654456676666642 3 23333 422110
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
. +-..+.+|||++ ..+.+++.+.+....+.+
T Consensus 423 ----~--------------~~~~~~~Rl~~s-~~~~e~i~~gi~~l~~~~ 453 (459)
T COG1167 423 ----D--------------GDPRNGLRLSFS-SPSEEEIEEGIKRLAALL 453 (459)
T ss_pred ----C--------------CCCCCeEEEEcC-CCCHHHHHHHHHHHHHHH
Confidence 0 012468999999 766665555554444333
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-26 Score=227.15 Aligned_cols=243 Identities=15% Similarity=0.164 Sum_probs=175.1
Q ss_pred chHHHHHHHHHHHhCC--------CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 99 PTVLNLSRQMAALEGT--------EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~--------~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
.....+++.+|++++. +++++|+|+++|+.+++.+++.+||+|+++.|+|..+...+. ..|.++..+
T Consensus 73 ~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~ 147 (403)
T TIGR01265 73 VGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAA-----FSGLEVRLY 147 (403)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEe
Confidence 3356789999999873 459999999999999999999999999999999998766552 257777766
Q ss_pred CC-------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cC
Q 013210 171 DI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR 234 (447)
Q Consensus 171 ~~-------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~ 234 (447)
+. .|++++++++ ++++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..+.++. ..
T Consensus 148 ~~~~~~~~~~d~~~l~~~~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~ 226 (403)
T TIGR01265 148 DLLPEKDWEIDLDGLEALA-DEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMAS 226 (403)
T ss_pred cCCcccCCccCHHHHHHHh-CcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhh
Confidence 53 2789999988 778999999999999999986 7899999999999999999997664431 11
Q ss_pred C---CCeEEEeCCCccccCCCCeeEEEEEcC--hH-----HHHHHHHHhhhhhhhcCCCccHHHHHHHHcc--CCcHHHH
Q 013210 235 L---GADVVVHSISKFISGGADIIAGAVCGP--AN-----LVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLR 302 (447)
Q Consensus 235 ~---g~di~~~S~sK~~g~~g~~igG~l~~~--~~-----~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~ 302 (447)
+ ...+++.|+||.|+.+|.|+ ||++.+ ++ +++.+...... ....+.+.+.++..++.. ..++...
T Consensus 227 ~~~~~~vi~~~S~SK~~~~pGlRi-G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~ 303 (403)
T TIGR01265 227 FASIVPVLSLGGISKRWVVPGWRL-GWIIIHDPHGIFRDTVLQGLKNLLQR--ILGPATIVQGALPDILENTPQEFFDGK 303 (403)
T ss_pred hccCCcEEEEeecccccCCCcceE-EEEEEeCchhhhHHHHHHHHHHHhhh--hcCCChHHHHHHHHHHHhChHHHHHHH
Confidence 1 24689999999999999999 898763 23 33333333220 022233444444444432 1345566
Q ss_pred HHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHh
Q 013210 303 MKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL 369 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~l~~~l 369 (447)
.+++.++++.+.+.|+.++ ..+..|. .|.++|+.++.. .....+.+.+
T Consensus 304 ~~~~~~~~~~l~~~L~~~~~~~~~~p~-------------------~g~f~~~~~~~~~~~~~~~~~~~~~~l 357 (403)
T TIGR01265 304 ISVLKSNAELCYEELKDIPGLVCPKPE-------------------GAMYLMVKLELELFPEIKDDVDFCEKL 357 (403)
T ss_pred HHHHHHHHHHHHHHHhcCCCceecCCC-------------------ceeEEEEeccccccCCCCCHHHHHHHH
Confidence 7778888999999998763 3433332 567999988632 1244565654
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=224.20 Aligned_cols=283 Identities=20% Similarity=0.261 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|+++ | .+++++|+|+++|+.+++.+++++||+|+++.|+|+++...+. ..|.++..++.
T Consensus 69 ~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~ 143 (388)
T PRK07337 69 LAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVA-----AAEGRPVLVPS 143 (388)
T ss_pred CHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEeec
Confidence 467888888886 3 2569999999999999999999999999999999999876663 24666666654
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cCCC-
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLG- 236 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~~~g- 236 (447)
+ |++++++.+ ++++++|++++|+||||.+.+ +++|+++|+++++++|+|++|..+.++. ..++
T Consensus 144 ~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 222 (388)
T PRK07337 144 GPAERFQLTAADVEAAW-GERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGD 222 (388)
T ss_pred CCccCCcCCHHHHHhhc-CccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccC
Confidence 2 789999988 778999999999999999986 6788899999999999999996554321 1222
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc--CCcHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFA 314 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~ 314 (447)
..+++.|+||.+|.+|.|+ ||+++++++++.+....... ....+.+.+.++..++.. ...+.+..++++++++.+.
T Consensus 223 ~vi~~~S~SK~~~~~G~Ri-G~~~~~~~l~~~l~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~ 300 (388)
T PRK07337 223 DVITINSFSKYFNMTGWRL-GWLVVPEALVGTFEKLAQNL-FICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIV 300 (388)
T ss_pred CEEEEEechhhcCCchhhe-eeeecCHHHHHHHHHHHHHh-ccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999998 99999999988887765421 122334444444444432 2334455566788899999
Q ss_pred HHHHhCCCee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHh-hcccccccccccccCccc
Q 013210 315 RRMKKLGLKV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL-QNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 315 ~~L~~~~~~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~l~~~l-~~~~~~g~~~vs~G~~~s 387 (447)
+.|++++..+ ..|. .|.++|+.++.. .....|...+ .. .| +.+..|....
T Consensus 301 ~~L~~~~~~~~~~p~-------------------~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~---~g-v~v~pg~~f~ 357 (388)
T PRK07337 301 PALESLGFKVPVMPD-------------------GAFYVYADCRGVAHPAAGDSAALTQAMLHD---AG-VVLVPGRDFG 357 (388)
T ss_pred HHHHhcCCccccCCC-------------------eeEEEEEecccccCCCCCCHHHHHHHHHHh---CC-EEEeCchhhC
Confidence 9998876533 2232 466899998631 1244565553 33 23 3444442210
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
..-.++++|||++ . +. +.|.++++++.
T Consensus 358 --------------------~~~~~~~~Ri~~~-~-~~----~~l~~~l~rl~ 384 (388)
T PRK07337 358 --------------------PHAPRDYIRLSYA-T-SM----SRLEEAVARLG 384 (388)
T ss_pred --------------------CCCCCCEEEEEec-C-CH----HHHHHHHHHHH
Confidence 0012479999999 6 32 34555555554
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=227.95 Aligned_cols=212 Identities=15% Similarity=0.158 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.++++++ .+.+++|+|+++|+.+++.+++++||+|++++|.|+.+..... ..|.++..++.
T Consensus 75 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~i~~ 149 (409)
T PLN02656 75 LPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAA-----FRHLEVRYVDL 149 (409)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHH-----HcCCEEEEEeC
Confidence 3578888888864 2569999999999999999999999999999999987765542 25777777664
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCCcc---------
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSPA--------- 233 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~~~--------- 233 (447)
+ |++++++++ ++++++|++++|+||||.+. ++++|+++|+++|+++|+|++|..+.++..
T Consensus 150 ~~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 228 (409)
T PLN02656 150 LPEKGWEVDLDAVEALA-DQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFG 228 (409)
T ss_pred CCcCCCCCCHHHHHHHh-ccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhc
Confidence 2 788999888 77899999999999999997 478889999999999999999976644311
Q ss_pred CCCCeEEEeCCCccccCCCCeeEEEEEcC--------hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC--CcHHHHH
Q 013210 234 RLGADVVVHSISKFISGGADIIAGAVCGP--------ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRM 303 (447)
Q Consensus 234 ~~g~di~~~S~sK~~g~~g~~igG~l~~~--------~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~ 303 (447)
.....+++.||||.|+.+|+|+ ||++++ +++++.+...... ....+.+.+.++..++... ..+....
T Consensus 229 ~~~~vi~~~SfSK~f~~pGlRi-G~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l~~~~~~~~~~~~ 305 (409)
T PLN02656 229 SIVPVLTLGSLSKRWIVPGWRL-GWFVTTDPSGSFRDPKIVERIKKYFDI--LGGPATFIQAAVPTILEQTDESFFKKTI 305 (409)
T ss_pred ccCcEEEEcccchhccCcceeE-EEEEEeCcccccccHHHHHHHHHHHhh--hcCCCHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1235789999999999999999 999873 5777777765441 1122334444554455421 2455666
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 013210 304 KEHCHRALIFARRMKKLG 321 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~~ 321 (447)
++++++++.+.+.|++++
T Consensus 306 ~~~~~~r~~~~~~L~~~~ 323 (409)
T PLN02656 306 NILKQSSDICCDRIKEIP 323 (409)
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 778888999999998764
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=222.07 Aligned_cols=311 Identities=16% Similarity=0.135 Sum_probs=215.1
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHH
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHA 153 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~ 153 (447)
+.+.+.++. ++.+...+.+.+...+..+++++.++++++.+..+++++|++++..+++.++++||+|+++.+.|+.+..
T Consensus 60 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~ 138 (385)
T PRK05958 60 AAAQQAARR-YGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLID 138 (385)
T ss_pred HHHHHHHHh-cCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHH
Confidence 555555543 2322222333334466788999999999998888888899999998888889999999999999998877
Q ss_pred HHHhhcCcccCeeEEEeCCCCHHHHHHhhccC--CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013210 154 LLTHFFPRACNITTTFVDISDHEMVNSAIVQG--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS 231 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~--~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~ 231 (447)
.+. ..|.++..++..|++++++.++.. +++++++++++|++|.+.++++|.++|++||+++|+|++|+...+.
T Consensus 139 ~~~-----~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~ 213 (385)
T PRK05958 139 GAR-----LSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLG 213 (385)
T ss_pred HHH-----hcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccC
Confidence 652 257788888888999999988332 4678888899999999999999999999999999999999432111
Q ss_pred -----------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHH-HHHHHccCCcH
Q 013210 232 -----------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV-AFELSERIPHL 299 (447)
Q Consensus 232 -----------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~-a~~~~~~~~~l 299 (447)
......++++.|+||+++++| |+++.++++.+.+...........+..+.+.+ +..++..++..
T Consensus 214 ~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~ 289 (385)
T PRK05958 214 PQGRGLAAEAGLAGEPDVILVGTLGKALGSSG----AAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRRE 289 (385)
T ss_pred CCCCchHHhhCCCCCCceEEEEechhhcccCC----cEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcC
Confidence 111235688999999998754 88888988887775443211111222222222 22233322222
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013210 300 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA 379 (447)
Q Consensus 300 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~ 379 (447)
....+++.++++++.+.|++.+.++.. ..|++++|.+++......+.+.|... | +.
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g-I~ 345 (385)
T PRK05958 290 PERRERLAALIARLRAGLRALGFQLMD--------------------SQSAIQPLIVGDNERALALAAALQEQ---G-FW 345 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCC--------------------CCCCEEEEEeCCHHHHHHHHHHHHHC---C-ce
Confidence 446677888999999999887654321 13568899987654567788888752 3 44
Q ss_pred ccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 380 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 380 vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
++.+.. +.. ....+.+|||++ ...+++.++.+.++|+++
T Consensus 346 v~~~~~------~~~--------------~~~~~~lRis~~-~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 346 VGAIRP------PTV--------------PAGTSRLRITLT-AAHTEADIDRLLEALAEA 384 (385)
T ss_pred EecccC------CCC--------------CCCCceEEEEec-CCCCHHHHHHHHHHHHhc
Confidence 433211 000 012368999999 878888888888887653
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=225.87 Aligned_cols=278 Identities=15% Similarity=0.198 Sum_probs=195.8
Q ss_pred CCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 95 RHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
++..+...+|++.+|+++|.+ .+++|+|+++++.+++++++++| |+|+++.|.|+.+...+. ..|.++..++
T Consensus 56 ~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~-----~~g~~v~~v~ 130 (354)
T PRK04635 56 RYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAE-----TFNVGVKALP 130 (354)
T ss_pred cCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH-----HcCCEEEEEe
Confidence 344444678999999999874 49999999999999999999888 899999999998776552 2677888776
Q ss_pred CC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh-cCCEEEEeCCCCCCCCC--c----cCCCCeE
Q 013210 172 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPLVLS--P----ARLGADV 239 (447)
Q Consensus 172 ~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~-~gi~livD~~~~~~~~~--~----~~~g~di 239 (447)
.+ |++.++ .+ +++++|++++||||||.+.+.+++.++++. .++++|+||+|..+... . ......+
T Consensus 131 ~~~~~~~~~~~l~-~~--~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~i 207 (354)
T PRK04635 131 LTADYQLPLDYIE-QL--DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLV 207 (354)
T ss_pred cCCCCCCCHHHHH-hc--cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEE
Confidence 54 567675 33 579999999999999999999999999876 37999999999555321 1 1124568
Q ss_pred EEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHH
Q 013210 240 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 240 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L 317 (447)
++.|+||++|.+|.|+ ||+++++++++.+...... ...+...+.++...+.. .+.+.+..+++.++++.+.+.|
T Consensus 208 v~~S~SK~~~l~GlRl-G~~i~~~~~~~~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L 283 (354)
T PRK04635 208 VLRTLSKAFALAGARC-GFTLANEELIEILMRVIAP---YPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAAL 283 (354)
T ss_pred EEechHHHhhhhHHHH-hhhhCCHHHHHHHHhhcCC---CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999 9999999999888765431 11122233333333322 2334455667888889999999
Q ss_pred HhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccccc
Q 013210 318 KKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 396 (447)
Q Consensus 318 ~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~ 396 (447)
++++ .++. |. .|.++++.+++. ..+.+.|... | +.+..+ ..
T Consensus 284 ~~~~~~~~~-~~-------------------~g~f~~~~~~~~---~~~~~~l~~~---g-v~v~~~-----------~~ 325 (354)
T PRK04635 284 SMYGGAKVL-EG-------------------NGNYVLAKFDDV---DAVFKALWDA---G-IVARAY-----------KD 325 (354)
T ss_pred HhCCCceEC-CC-------------------CCcEEEEECCCH---HHHHHHHHHC---C-EEEEEC-----------CC
Confidence 9876 3443 22 245888888643 3455555542 3 333211 00
Q ss_pred CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 397 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 397 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
...++++|||+| . .+.++.|.++|++
T Consensus 326 ------------~~~~~~lRis~~-~---~e~~~~l~~al~~ 351 (354)
T PRK04635 326 ------------PRLANCIRFSFS-N---RAETDKLIGLIRN 351 (354)
T ss_pred ------------CCCCCeEEEEeC-C---HHHHHHHHHHHHH
Confidence 001468999999 3 3556666666653
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=226.86 Aligned_cols=230 Identities=15% Similarity=0.177 Sum_probs=167.3
Q ss_pred HHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.++++.+|++++ .+.+++|+|+++++.+++++++.+||.|+++.|+|+.+...+. ..|.++..++.+
T Consensus 77 ~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~-----~~g~~~~~~~~~ 151 (409)
T PLN00143 77 LPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAI-----FHHLEIRHFDLL 151 (409)
T ss_pred HHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHH-----HcCCEEEEEecc
Confidence 568888888862 2569999999999999999999999999999999999877663 257777666531
Q ss_pred -------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc---------C
Q 013210 174 -------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA---------R 234 (447)
Q Consensus 174 -------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~---------~ 234 (447)
|+++|++++ +++++++++++||||||.+.+ +++|+++|++|++++|+||+|..+.++.. .
T Consensus 152 ~~~~~~~d~~~l~~~~-~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 230 (409)
T PLN00143 152 PEKGWEVDLDAVEAIA-DENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFAS 230 (409)
T ss_pred CCCCCcCCHHHHHHhc-ccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcc
Confidence 789999888 778999999999999999997 66888889999999999999976654211 1
Q ss_pred CCCeEEEeCCCccccCCCCeeEEEEEc--ChHHH------HHHHHHhhhhhhhcCCCccHHHHHHHHcc--CCcHHHHHH
Q 013210 235 LGADVVVHSISKFISGGADIIAGAVCG--PANLV------NSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMK 304 (447)
Q Consensus 235 ~g~di~~~S~sK~~g~~g~~igG~l~~--~~~~~------~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~ 304 (447)
....+++.|+||.|+.+|.|+ ||+++ ++.++ +.+..... . ....+.+.+.++..++.. ..++.+..+
T Consensus 231 ~~~vi~~~SfSK~f~~pGlRv-G~~v~~~p~~~~~~~~~~~~~~~~~~-~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~ 307 (409)
T PLN00143 231 IVPVITLGSISKRWMIPGWGL-GWLVTCDPSGLLQICEIADSIKKALN-P-APFPPTFIQAAIPEILEKTTEDFFSKTIN 307 (409)
T ss_pred cCcEEEEccchhhcCCCccce-EEEEeeCchhhhhhHHHHHHHHHHHh-c-cCCCCchHHHHHHHHHhcChHHHHHHHHH
Confidence 135689999999999999999 99987 33333 22332222 0 112334444444444432 234566777
Q ss_pred HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 305 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+++++++.+.+.|++++.... + ..| ..|.++|+.++
T Consensus 308 ~~~~~~~~~~~~L~~~~~~~~-~---~~p-------------~gg~f~w~~l~ 343 (409)
T PLN00143 308 ILRAALAFCYDKLKEIPCIMC-P---QKA-------------EGAFFALVKLN 343 (409)
T ss_pred HHHHHHHHHHHHHhcCCCCCC-C---CCC-------------CeeEEEEEecc
Confidence 788888888888887643211 1 112 25678999986
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=227.09 Aligned_cols=292 Identities=14% Similarity=0.159 Sum_probs=208.0
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHH
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM 177 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 177 (447)
.+..+++|+.+|+++|.++.+++++|+.++..++.+++++||.|+++++.|+++...+ +..|++++.++.+|.++
T Consensus 145 ~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~-----~~~Ga~v~~~~~~d~~~ 219 (489)
T PLN02483 145 TKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVNGA-----RGSGATIRVFQHNTPSH 219 (489)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHHHH-----HHcCCeEEEEeCCCHHH
Confidence 5677899999999999988888888999999889999999999999999999987765 23688999998888888
Q ss_pred HHHhhcc------CCc-----e-EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-----------CccC
Q 013210 178 VNSAIVQ------GRT-----K-VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-----------SPAR 234 (447)
Q Consensus 178 l~~~i~~------~~t-----~-lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-----------~~~~ 234 (447)
+++.+++ ++| + +|+++.+.|++|.+.++++|.++|++||+++++||+|+-... ....
T Consensus 220 le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~ 299 (489)
T PLN02483 220 LEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDP 299 (489)
T ss_pred HHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCc
Confidence 8776631 222 4 667788889999999999999999999999999999942111 1111
Q ss_pred CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCcc---HHHHHHHHc---c---CCcHHHHHHH
Q 013210 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN---PKVAFELSE---R---IPHLGLRMKE 305 (447)
Q Consensus 235 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~---~~~a~~~~~---~---~~~l~~~~~~ 305 (447)
.++|++++|+||++|+.| ||+++++++++.++...... ..+..++ .+.+..++. . .+...++.++
T Consensus 300 ~~~dI~~~SfSKs~g~~G----G~i~~~~~li~~l~~~~~~~--~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~ 373 (489)
T PLN02483 300 ADVDIMMGTFTKSFGSCG----GYIAGSKELIQYLKRTCPAH--LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQ 373 (489)
T ss_pred ccCcEEEEecchhcccCc----eEEEcCHHHHHHHHHhCccc--cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHH
Confidence 257999999999999754 99999999999887653311 1222222 112222221 1 1223456778
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCc
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 385 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~ 385 (447)
++++++++.+.|+++++.+..+. .++++++.+........+.+.|... | +.+...+
T Consensus 374 l~~~~~~l~~~L~~~G~~v~~~~-------------------~sp~~~l~l~~~~~~~~~~~~Ll~~---G-I~v~~~~- 429 (489)
T PLN02483 374 IRENSNFFRSELQKMGFEVLGDN-------------------DSPVMPIMLYNPAKIPAFSRECLKQ---N-VAVVVVG- 429 (489)
T ss_pred HHHHHHHHHHHHHHCCCcccCCC-------------------CCCEEEEEECCHHHHHHHHHHHHHC---C-cEEeeeC-
Confidence 99999999999998876544221 2347777776555566787777653 3 3333111
Q ss_pred cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcCC
Q 013210 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGV 444 (447)
Q Consensus 386 ~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~~ 444 (447)
.|+.. ...+.+||+++ ..++++.++.+.++|+++.+..+
T Consensus 430 -----fp~~p--------------~~~~~vRi~is-a~~t~edId~~l~~L~~~~~~~~ 468 (489)
T PLN02483 430 -----FPATP--------------LLLARARICIS-ASHSREDLIKALEVISEVGDLVG 468 (489)
T ss_pred -----CCCCC--------------CCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 12111 12367999999 87777878877777777654433
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=226.86 Aligned_cols=241 Identities=16% Similarity=0.194 Sum_probs=182.6
Q ss_pred chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 99 PTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
+....+++.+|++++++ .+++|+|+++++..++..++++||+|+++.|.|..+...++ ..|.++..++.+
T Consensus 57 ~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~ 131 (352)
T PRK03321 57 MGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQ-----VAGATPVQVPLTPDH 131 (352)
T ss_pred CcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHH-----HcCCEEEEccCCCCC
Confidence 45688999999999864 59999999999999998889999999999999987765542 257787777764
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc-----c----CCCCeEE
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP-----A----RLGADVV 240 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~-----~----~~g~di~ 240 (447)
|++++++++ ++++++|++++|+||||.+.|.++|.++|+. +++++|+|++|..+.+.. . ..+..++
T Consensus 132 ~~~~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~ 210 (352)
T PRK03321 132 THDLDAMAAAI-TDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVV 210 (352)
T ss_pred CCCHHHHHHhh-ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEE
Confidence 789999988 6789999999999999999999999999987 599999999996554321 1 1246789
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
+.|+||.+|.+|.|+ ||+++++++++.+..... ....+.+.+.++...+...+.+.++.++..+.++.+.+.|++.
T Consensus 211 ~~S~SK~~g~~GlRi-G~~v~~~~~~~~~~~~~~---~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~ 286 (352)
T PRK03321 211 LRTFSKAYGLAGLRV-GYAVGHPEVIAALRKVAV---PFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA 286 (352)
T ss_pred EecchHHhhhHHHhh-hhhcCCHHHHHHHHHhcC---CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999 999999999988876532 1223334444444444443445556666667777888899876
Q ss_pred CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 321 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 321 ~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
+..+. | ..|.++++.++. ....+.+.|..
T Consensus 287 ~~~~~-~-------------------~~g~~i~i~l~~--~~~~~~~~l~~ 315 (352)
T PRK03321 287 GWTVP-P-------------------SQANFVWLPLGE--RTADFAAAAAE 315 (352)
T ss_pred CCccC-C-------------------CCCCEEEEeCCC--CHHHHHHHHHH
Confidence 54321 1 135688888853 24567777764
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-26 Score=226.17 Aligned_cols=249 Identities=18% Similarity=0.189 Sum_probs=179.4
Q ss_pred HHHHHHHHHHh----C------CC-eEEEeCChHHHHHHHHHHhcCCCCe--EEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 102 LNLSRQMAALE----G------TE-AAYCTASGMSAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 102 ~~l~~~ia~l~----g------~~-~~~~tsggt~A~~~al~~l~~~gd~--Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
.++++.+|+++ | .+ .+++|+|+++|+.++++.++++||+ |+++.|.|+.+...+. ..|.++.
T Consensus 67 ~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~-----~~g~~~~ 141 (393)
T TIGR03538 67 PELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAAL-----LAGAEPY 141 (393)
T ss_pred HHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHH-----hcCCeEE
Confidence 56888888876 2 22 5889999999999999999999986 9999999998877652 2677777
Q ss_pred EeCCC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC----cc-
Q 013210 169 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----PA- 233 (447)
Q Consensus 169 ~v~~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~----~~- 233 (447)
.++.+ |++++++++ ..++++|++++|+||||.+.+ +++|+++|++||+++|+||+|..+.++ +.
T Consensus 142 ~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~ 220 (393)
T TIGR03538 142 FLNCTAENGFLPDFDAVPESV-WRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAG 220 (393)
T ss_pred EeeccccCCCCCCHHHHHHHH-hhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcC
Confidence 77652 678898887 568999999999999999997 678899999999999999999655432 10
Q ss_pred -----------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHH
Q 013210 234 -----------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 302 (447)
Q Consensus 234 -----------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~ 302 (447)
.....+++.|+||.++.+|.|+ ||+++++++++.+....... ....+...+.++...+...+.+...
T Consensus 221 ~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRv-G~~i~~~~l~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~ 298 (393)
T TIGR03538 221 LLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRS-GFVAGDAEILKAFLRYRTYH-GCAMPIPTQLASIAAWNDEQHVREN 298 (393)
T ss_pred HHHhcccccccccccEEEEecchhhcCCcccce-EEEecCHHHHHHHHHHHHhh-ccCcCHHHHHHHHHHhcChHHHHHH
Confidence 1234699999999999999999 99999999988887665411 1122233333333333332345556
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc
Q 013210 303 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL 382 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~ 382 (447)
.+.++++++.+.+.|+++ ..+..| ..|.++|+.++. ....+.+.+.. +.| +.+..
T Consensus 299 ~~~~~~~~~~~~~~L~~~-~~~~~p-------------------~gg~f~~~~~~~--~~~~~~~~l~~--~~g-V~v~p 353 (393)
T TIGR03538 299 RALYREKFAAVLEILGQV-LDLELP-------------------DAGFYLWPKVPG--DDEAFARALYE--EEN-VTVLP 353 (393)
T ss_pred HHHHHHHHHHHHHHHHhh-CcccCC-------------------CeeEEEEEECCC--CHHHHHHHHHH--HCC-EEEeC
Confidence 667888888899998764 222222 256799999971 13456666532 123 45555
Q ss_pred c
Q 013210 383 G 383 (447)
Q Consensus 383 G 383 (447)
|
T Consensus 354 g 354 (393)
T TIGR03538 354 G 354 (393)
T ss_pred C
Confidence 5
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=232.49 Aligned_cols=216 Identities=15% Similarity=0.164 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHh------CC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE------GT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~------g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
...||+.||+++ +. ++|++|+|+++++.+++.+++++||+|+++.|.|+.+...+. ..|.++..++.
T Consensus 187 ~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~-----~~g~~~v~~~~ 261 (517)
T PRK13355 187 LFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVN-----LAGGTAVHYRC 261 (517)
T ss_pred hHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHH-----HCCCEEEEeec
Confidence 568999999887 33 569999999999999999999999999999999999887663 25777766643
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cCC-
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL- 235 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~~- 235 (447)
+ |+++|++++ ++++++|++++||||||.+.+ +++|+++|++||+++|+||+|..+.++. ..+
T Consensus 262 ~~~~~~~~d~~~l~~~~-~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~ 340 (517)
T PRK13355 262 DEQSEWYPDIDDIRSKI-TSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLA 340 (517)
T ss_pred CcccCCCCCHHHHHHhc-CcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhC
Confidence 2 789999988 788999999999999999998 7889999999999999999997665432 111
Q ss_pred -C-CeEEEeCCCccccCCCCeeEEEEE--cChHHH----HHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHH---HHH
Q 013210 236 -G-ADVVVHSISKFISGGADIIAGAVC--GPANLV----NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL---RMK 304 (447)
Q Consensus 236 -g-~di~~~S~sK~~g~~g~~igG~l~--~~~~~~----~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~---~~~ 304 (447)
+ ..+++.||||.|+.+|+|+ ||++ ++++++ +.+..... .....+.+.+.++..++........ ..+
T Consensus 341 ~~~~vi~~~S~SK~~~~~G~Ri-G~~i~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~ 417 (517)
T PRK13355 341 PDLFCVTFSGLSKSHMIAGYRI-GWMILSGNKRIAKDYIEGLNMLAN--MRLCSNVPAQSIVQTALGGHQSVKDYLVPGG 417 (517)
T ss_pred CCCeEEEEecchhhccCcccce-EEEEeeCchhhHHHHHHHHHHHhc--CcCCcChHHHHHHHHHhcCCccHHHHHHHHH
Confidence 1 2455699999999999999 9988 445443 33332221 1122334445555555543322222 233
Q ss_pred HHHHHHHHHHHHHHhC-CCeee
Q 013210 305 EHCHRALIFARRMKKL-GLKVL 325 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~-~~~v~ 325 (447)
++.++++++.+.|+++ +..+.
T Consensus 418 ~~~~~r~~l~~~L~~~~g~~~~ 439 (517)
T PRK13355 418 RVYEQRELVYNALNAIPGISAV 439 (517)
T ss_pred HHHHHHHHHHHHHhcCCCcccC
Confidence 4556678899999876 33443
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=224.85 Aligned_cols=212 Identities=17% Similarity=0.171 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHhCC----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC----
Q 013210 101 VLNLSRQMAALEGT----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---- 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g~----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~---- 172 (447)
++.+.+.+++..|. +++++|+|+++|+..++.+++++||+|+++.|.|..+...+.. .+..+..++.
T Consensus 76 r~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~-----~~~~~~~v~~~~~~ 150 (402)
T PRK06107 76 RKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLA-----NDGTPVIVACPEEQ 150 (402)
T ss_pred HHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHH-----cCCEEEEecCCccc
Confidence 34455555555453 4599999999999999998899999999999999888766521 3334444433
Q ss_pred ---CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhc-CCEEEEeCCCCCCCCCc------cC-----
Q 013210 173 ---SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDK-GVTVVVDNTFSPLVLSP------AR----- 234 (447)
Q Consensus 173 ---~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~-gi~livD~~~~~~~~~~------~~----- 234 (447)
.|++++++++ ++++++|++++|+||||.+.+ +++|+++|+++ ++++|+|++|..+.++. ..
T Consensus 151 ~~~~~~~~l~~~~-~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~ 229 (402)
T PRK06107 151 GFKLTPEALEAAI-TPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPEL 229 (402)
T ss_pred CCCCCHHHHHhhc-CcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCc
Confidence 2678999988 678999999999999999986 56778888998 99999999996553321 11
Q ss_pred CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHHHHHHH
Q 013210 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIF 313 (447)
Q Consensus 235 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~~~l 313 (447)
.+..+++.|+||.++.+|.|+ ||+++++++++.+....... ....+.+.+.++..++.. ..++....+.+.++++.+
T Consensus 230 ~~~vi~~~S~SK~~~~pGlRi-G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (402)
T PRK06107 230 RDRVLVTNGVSKTYAMTGWRI-GYAAGPADLIAAINKLQSQS-SSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYA 307 (402)
T ss_pred cCCEEEEeccchhhcCcccce-eeeecCHHHHHHHHHHHHhc-ccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 136799999999999999999 99999999999888766521 123344444455444432 334556667788999999
Q ss_pred HHHHHhC
Q 013210 314 ARRMKKL 320 (447)
Q Consensus 314 ~~~L~~~ 320 (447)
.+.|+++
T Consensus 308 ~~~L~~~ 314 (402)
T PRK06107 308 LALLNAI 314 (402)
T ss_pred HHHHhcC
Confidence 9999876
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=223.24 Aligned_cols=284 Identities=16% Similarity=0.155 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++|+.+++.++ .+.+++|+|+++|+..++.+++++||+|+++.|.|..+...+. ..|.++..++.
T Consensus 69 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~ 143 (386)
T PRK07550 69 LPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLD-----MLGIRPVYLPC 143 (386)
T ss_pred CHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEEec
Confidence 3566677776653 2569999999999999999999999999999999998877663 26888877775
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC--
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-- 234 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~-- 234 (447)
+ |++++++++ +.++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+... ...
T Consensus 144 ~~~~~~~~~~~~l~~~~-~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~ 222 (386)
T PRK07550 144 DEGPGLLPDPAAAEALI-TPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADP 222 (386)
T ss_pred CCCcCCCCCHHHHHHHh-cccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCC
Confidence 3 678899988 678999999999999999987 779999999999999999998554321 111
Q ss_pred --CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC-cHHHHHHHHHHHHH
Q 013210 235 --LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCHRAL 311 (447)
Q Consensus 235 --~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~-~l~~~~~~~~~~~~ 311 (447)
....+++.|+||.+|.+|.|+ ||+++++++++.+....... ....+...+.++..++..++ ++....+++.++++
T Consensus 223 ~~~~~~i~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 300 (386)
T PRK07550 223 DWDDTLVHLYSFSKSYALTGHRV-GAVVASPARIAEIEKFMDTV-AICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRD 300 (386)
T ss_pred CccccEEEEecchhhccCcccce-EeeecCHHHHHHHHHHHhhc-ccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 124688999999999999998 99999999988887655411 12223334444444444322 23344556788888
Q ss_pred HHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccc
Q 013210 312 IFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 312 ~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
.+.+.|++++ ..+ .| ..|.++|+.++. ..+...+...|.. +.| +.+..|...
T Consensus 301 ~l~~~L~~~~~~~~-~~-------------------~g~~~~~~~~~~~~~~~~~l~~~l~~--~~g-v~v~pg~~f--- 354 (386)
T PRK07550 301 AFRAVFARLPGWEL-LA-------------------SGAYFAYVRHPFPDRPSREVARRLAK--EAG-ILCLPGTMF--- 354 (386)
T ss_pred HHHHHHHhCCCcee-CC-------------------CceEEEEecCCCCCCCHHHHHHHHHH--hcC-EEEeCchhh---
Confidence 9999998762 222 11 135588888864 3335667666532 123 344444211
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
. ...++++|||++ ..+ ++.+++..+.|.+
T Consensus 355 -----~-------------~~~~~~iRis~~-~~~-~~~~~~~~~~l~~ 383 (386)
T PRK07550 355 -----G-------------PGQEGYLRLAFA-NAD-VAGIGELVERLRA 383 (386)
T ss_pred -----C-------------CCCCCEEEEEee-cCC-HHHHHHHHHHHHh
Confidence 0 012478999999 654 4444444444443
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-26 Score=222.90 Aligned_cols=277 Identities=13% Similarity=0.111 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 100 TVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
....+|+.+|++++. +.+++|+|+++++..+++++ .+|+ +++..|.|..+...++ ..|.++..++.+
T Consensus 56 ~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~ 128 (356)
T PRK08056 56 EYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQ-----QVGCEIRRYSLREADG 128 (356)
T ss_pred cHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHH-----HcCCeEEEEecccccC
Confidence 357899999999976 45999999999999999876 6675 7778899988876663 267787777643
Q ss_pred -CH-HHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEE
Q 013210 174 -DH-EMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVV 241 (447)
Q Consensus 174 -d~-~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~ 241 (447)
++ +++++.+ .+++++|++++|+||||.+.+ +++|+++|+++++++|+|++|..+.+.. ...+.++++
T Consensus 129 ~~~~~~~~~~~-~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~ 207 (356)
T PRK08056 129 WQLTDAILEAL-TPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVL 207 (356)
T ss_pred CCccHHHHHhc-cCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEE
Confidence 22 3555666 678999999999999999998 7788999999999999999985554221 123578999
Q ss_pred eCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 242 HSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
.|+||++|.+|.|+ ||++. ++++++.+...... ...+.+.+.++..++....++.+..++++++++++.+.|+++
T Consensus 208 ~S~SK~~~~~G~Ri-G~~v~~~~~~~~~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 283 (356)
T PRK08056 208 RSLTKFYAIPGLRL-GYLVNSDDAAVARMRRQQMP---WSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCAL 283 (356)
T ss_pred EechhhccCcchhh-eeeecCCHHHHHHHHHhCCC---CchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999 99987 46777777654321 111222233333333322334445567888999999999876
Q ss_pred CC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCC
Q 013210 321 GL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399 (447)
Q Consensus 321 ~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~ 399 (447)
+. .+. |. .|+++++.++.. ...+.+.|... | +.+..|...
T Consensus 284 ~~~~~~-~~-------------------~~~~~~~~~~~~--~~~~~~~l~~~---g-I~v~~~~~f------------- 324 (356)
T PRK08056 284 PLLTVW-PG-------------------RANYLFLRCERP--DIDLQRALLTQ---R-ILIRSCANY------------- 324 (356)
T ss_pred CCcEEc-CC-------------------CCcEEEEEcCCC--hHHHHHHHHHC---C-eEEEECCCC-------------
Confidence 33 332 22 356888888632 34566666642 3 444444211
Q ss_pred CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 400 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+...++||||++ . .+..+.|.++|+++
T Consensus 325 --------~~~~~~~iRis~~-~---~~~~~~l~~~l~~~ 352 (356)
T PRK08056 325 --------PGLDSRYYRVAIR-S---AAENERLLAALRNV 352 (356)
T ss_pred --------CCCCCCEEEEEEc-C---HHHHHHHHHHHHHH
Confidence 0223478999999 4 23334555555444
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=207.19 Aligned_cols=294 Identities=19% Similarity=0.196 Sum_probs=205.8
Q ss_pred ccccCCCCchHHHHHHHHHHHhC----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 166 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 166 (447)
|-|..........+....++-.+ .+.++|+++..-++..+++++.++||.|++..|.|++++.... ..|.+
T Consensus 56 fGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~-----~n~R~ 130 (388)
T COG1168 56 FGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIK-----LNGRK 130 (388)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHh-----hcCcE
Confidence 44553333344555555555544 3569999999999999999999999999999999999998884 24555
Q ss_pred EEEeCCC--------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCccC-
Q 013210 167 TTFVDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPAR- 234 (447)
Q Consensus 167 ~~~v~~~--------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~~- 234 (447)
+...|.. |+++||+++..++++++++|+|+||+|.+.. |.+|.++|.+||+++|+||.|+++.+....
T Consensus 131 ~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h 210 (388)
T COG1168 131 VIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKH 210 (388)
T ss_pred EEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCc
Confidence 5555432 9999999997777899999999999999984 888999999999999999999877654311
Q ss_pred -----C-----CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCC-ccHHHHHHHHc-cCCcHHHH
Q 013210 235 -----L-----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSE-RIPHLGLR 302 (447)
Q Consensus 235 -----~-----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~-~~~~l~~~ 302 (447)
+ ...+.+.|.||.|+.+|..++-+++.++++..++.+...... ..+.+ ++..+...+.+ +-+++.+.
T Consensus 211 ~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~-~~~~n~lg~~A~~aAY~~G~~WLd~L 289 (388)
T COG1168 211 IPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNG-LHGPSALGIIATEAAYNQGEPWLDEL 289 (388)
T ss_pred cchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHhchHHHHHH
Confidence 1 456889999999999999874444566666444433222111 23333 33333333333 44668888
Q ss_pred HHHHHHHHHHHHHHHHhC-C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHHH-HHHHhhccccc
Q 013210 303 MKEHCHRALIFARRMKKL-G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANR-LMNYLQNYAQF 375 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~-~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~-l~~~l~~~~~~ 375 (447)
.+-++.+++++.+.|.++ | .++..|. ...++|+.+. +.+..+. +++..+
T Consensus 290 ~~yl~~N~~~~~~~l~~~~P~v~v~~p~-------------------gTYL~WLD~r~l~l~d~~l~~~ll~~ak----- 345 (388)
T COG1168 290 LEYLKDNRDYVADFLNKHLPGVKVTEPQ-------------------GTYLAWLDCRELGLDDSELAEFLLEEAK----- 345 (388)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEEecCC-------------------CceeeeeeccccCCChHHHHHHHHHhhc-----
Confidence 888999999999999876 3 3777665 3348999886 2222333 333333
Q ss_pred ccccccccCccccccccccccCCCCCHHHHHhcCC-CCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013210 376 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI-SAGLVRMSVGYL--GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 376 g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~-~~~~iRiS~g~~--~~~~~~i~~l~~al~~~ 439 (447)
++++.|.. .|. ..+++|+.++ . ...++.++.+.++|+++
T Consensus 346 --Val~~G~~----------------------FG~~g~gf~RlN~a-cpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 346 --VALSPGST----------------------FGEEGSGFVRLNFA-CPRAILEEALERLKRALKKR 387 (388)
T ss_pred --EeccCCCc----------------------cCcCCCceEEEecC-CCHHHHHHHHHHHHHHHhcc
Confidence 57777732 122 2589999999 5 55666666776666543
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=219.24 Aligned_cols=277 Identities=17% Similarity=0.158 Sum_probs=199.3
Q ss_pred ccCCCCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 93 YSRHFNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
+.++.++...++|+.+|+++|. +.+++|+|+++++..++.. +.+| +|+++.|+|..+...+. . .|+++..+
T Consensus 41 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~----~-~g~~~~~~ 113 (330)
T TIGR01140 41 WARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL-LAPG-RVLVLAPTYSEYARAWR----A-AGHEVVEL 113 (330)
T ss_pred HhhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHH----H-cCCEEEEe
Confidence 3444555568999999999986 5699999999999997655 5677 79999999998877763 2 68888888
Q ss_pred CCCCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc--c----CCCCeEEE
Q 013210 171 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--A----RLGADVVV 241 (447)
Q Consensus 171 ~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--~----~~g~di~~ 241 (447)
+ |++++++.+ + ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..+.... . ..+.++++
T Consensus 114 ~--d~~~l~~~~-~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~ 189 (330)
T TIGR01140 114 P--DLDRLPAAL-E-ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVL 189 (330)
T ss_pred C--CHHHHHhhc-c-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEE
Confidence 7 899999988 4 5789999999999999998 6677888899999999999995544321 1 12578999
Q ss_pred eCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 242 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
.|+||.+|++|.|+ ||+++++++++.+...... ...+.+++.++...+..........++++++++.+.+.|++++
T Consensus 190 ~S~SK~~g~~G~R~-G~i~~~~~~~~~l~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 265 (330)
T TIGR01140 190 RSLTKFFGLAGLRL-GFVVAHPALLARLREALGP---WTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLG 265 (330)
T ss_pred EecchhhcCchhhh-hheeCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998 9999999998888766541 2223333333433443333344556778999999999999886
Q ss_pred C-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCC
Q 013210 322 L-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 400 (447)
Q Consensus 322 ~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~ 400 (447)
. ++ .| +.|.++|+.+++. ..+.+.|... | +.+..|... +
T Consensus 266 ~~~~-~~-------------------~~~~f~~~~~~~~---~~l~~~l~~~---g-i~v~pg~~f-----~-------- 305 (330)
T TIGR01140 266 GLEV-VG-------------------GTALFLLVRTPDA---AALHEALARR---G-ILIRDFDNF-----P-------- 305 (330)
T ss_pred CceE-CC-------------------CCCeEEEEEcCCH---HHHHHHHHHC---C-EEEEECCCC-----C--------
Confidence 4 32 22 2456888888753 4566676652 3 444444221 0
Q ss_pred CHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 401 NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 401 ~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
+...++|||+++ ..+ +. +.|.++|
T Consensus 306 --------~~~~~~iRi~~~-~~~--~~-~~~~~~l 329 (330)
T TIGR01140 306 --------GLDPRYLRFALP-TDE--EN-DRLEEAL 329 (330)
T ss_pred --------CCCCCEEEEEec-CHH--HH-HHHHHhh
Confidence 223468999999 433 33 6666554
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=223.89 Aligned_cols=240 Identities=19% Similarity=0.263 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHh-------CCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 101 VLNLSRQMAALE-------GTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 101 ~~~l~~~ia~l~-------g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
..++++.+++++ ..+.+++|+|+++|+.+++..++++||+|+++.|.|..+...++ ..|.++..++.+
T Consensus 68 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~ 142 (397)
T PRK07568 68 IPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFAT-----SAGVKIVPVTTK 142 (397)
T ss_pred CHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHH-----HcCCEEEEeecC
Confidence 467889999886 24569999999999999999989999999999999988766552 257777766542
Q ss_pred --------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cC--
Q 013210 174 --------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR-- 234 (447)
Q Consensus 174 --------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~-- 234 (447)
++++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.++. ..
T Consensus 143 ~~~g~~~~~~~~l~~~~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~ 221 (397)
T PRK07568 143 IEEGFHLPSKEEIEKLI-TPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLE 221 (397)
T ss_pred cccCCCCCCHHHHHHhc-CccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcC
Confidence 468899888 778999999999999999985 7889999999999999999996554321 11
Q ss_pred --CCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013210 235 --LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 310 (447)
Q Consensus 235 --~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 310 (447)
.+..+++.|+||.+|++|.|+ ||+++ ++++++.+...... ....+.+.+.++..++... .++....+.+++++
T Consensus 222 ~~~~~~i~~~S~SK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 298 (397)
T PRK07568 222 GLEDRVIIIDSVSKRYSACGARI-GCLISKNKELIAAAMKLCQA--RLSPPTLEQIGAAALLDTPESYFDEVREEYKKRR 298 (397)
T ss_pred CCcCCEEEEecchhhccCCCcce-EEEecCCHHHHHHHHHHhhc--cCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 135689999999999999999 88887 46787777554331 1233444454544444432 33455566788899
Q ss_pred HHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013210 311 LIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 369 (447)
Q Consensus 311 ~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l 369 (447)
+.+.+.|++++. .+..|. .|.++++.++.. ....+.+.+
T Consensus 299 ~~l~~~L~~~~~~~~~~p~-------------------g~~~~~~~l~~~-~~~~~~~~l 338 (397)
T PRK07568 299 DILYEELNKIPGVVCEKPK-------------------GAFYIIAKLPVD-DAEDFAKWL 338 (397)
T ss_pred HHHHHHHhcCCCceecCCC-------------------cceEEEEecCCC-CHHHHHHHH
Confidence 999999987632 333222 345678888742 234555554
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=220.62 Aligned_cols=302 Identities=15% Similarity=0.144 Sum_probs=206.3
Q ss_pred cccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 92 ~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.||+.. ...+||+++|+++|.+..+++++|+.|+..++.+++++||+|+++++.|+++...+. ..+.++.+++
T Consensus 38 ~yg~~~--~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~~-----l~~~~~~~~~ 110 (392)
T PLN03227 38 FYGTID--AHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGVS-----LSRANVRWFR 110 (392)
T ss_pred ccCChH--HHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHH-----HcCCeEEEeC
Confidence 377755 678999999999999999999999999999999999999999999999999877651 1345777777
Q ss_pred CCCHHHHHH---hhc----------cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCC-------
Q 013210 172 ISDHEMVNS---AIV----------QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVL------- 230 (447)
Q Consensus 172 ~~d~~~l~~---~i~----------~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~------- 230 (447)
..|.+++++ .+. ++++++|++|+++|++|.+.|+++|.++|++||+++|+||+|+ +...
T Consensus 111 ~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~ 190 (392)
T PLN03227 111 HNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSL 190 (392)
T ss_pred CCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHH
Confidence 766666555 331 1368999999999999999999999999999999999999994 1111
Q ss_pred -----CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHH---HHHHHHccCCcHHHH
Q 013210 231 -----SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK---VAFELSERIPHLGLR 302 (447)
Q Consensus 231 -----~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~---~a~~~~~~~~~l~~~ 302 (447)
.| ..++|+++.|++|.+|+. ||++++++++++.++....+. .++.+.++. ++..++........+
T Consensus 191 ~~~g~~p-~~~~Div~~slsk~~g~~----gg~v~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~aa~~al~~~~~~~~~ 263 (392)
T PLN03227 191 EHAGLKP-MVHAEIVTFSLENAFGSV----GGMTVGSEEVVDHQRLSGSGY--CFSASAPPFLAKADATATAGELAGPQL 263 (392)
T ss_pred HHcCCCC-CCCceEEEeechhhhhcc----CcEEecCHHHHHHHHHhCcCc--cccCCCCHHHHHHHHHHHHHHhcCHHH
Confidence 11 236799999999998844 488889988887765433211 334443332 222233222223457
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCC---CCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH---------HHHHHHHhh
Q 013210 303 MKEHCHRALIFARRMKKLGLKVLYP---GLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK---------ANRLMNYLQ 370 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~~~v~~p---~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~---------~~~l~~~l~ 370 (447)
.+++.++.++|.+.|++.+...... ++.-.. ...|.++.+.+.+... ...+.+.+.
T Consensus 264 ~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~------------~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (392)
T PLN03227 264 LNRLHDSIANLYSTLTNSSHPYALKLRNRLVITS------------DPISPIIYLRLSDQEATRRTDETLILDQIAHHSL 331 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccccccCC------------CCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHH
Confidence 7788999999999998643211000 100000 0246799999975322 236666666
Q ss_pred cccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 371 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 371 ~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
. .|++....|.. .....+ -+++..||+++. ..+++++++.+.++|+++.
T Consensus 332 ~---~Gi~~~~~~~~-~~~~~~----------------~~P~~~iR~~~~-~~~t~eei~~~~~~l~~~~ 380 (392)
T PLN03227 332 S---EGVAVVSTGGH-VKKFLQ----------------LVPPPCLRVVAN-ASHTREDIDKLLTVLGEAV 380 (392)
T ss_pred H---CCCEEEecccc-cCCcCC----------------CCCCceEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 5 34333223311 000011 123567999999 9888888888777777654
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=228.81 Aligned_cols=219 Identities=18% Similarity=0.157 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++|+.||++++ .+++++|+|+++|+.+++++++ ++||.|+++.|.|+.+...+. ..|.++..++
T Consensus 117 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~-----~~g~~~v~v~ 191 (481)
T PTZ00377 117 YPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAIT-----LLGGKQVPYY 191 (481)
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHH-----HcCCEEEEEE
Confidence 4578888888863 3569999999999999999998 799999999999999988773 2566666665
Q ss_pred CC-------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC---cc
Q 013210 172 IS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---PA 233 (447)
Q Consensus 172 ~~-------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---~~ 233 (447)
.+ |+++|++++.. .++++|++++|+||||.+++ +++|+++|++||+++|+||+|..+.++ +.
T Consensus 192 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~ 271 (481)
T PTZ00377 192 LDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPF 271 (481)
T ss_pred eccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCc
Confidence 32 67999988832 17899999999999999998 788999999999999999999665442 10
Q ss_pred --------CCC-------CeEEEeCCCcc-ccCCCCeeEEEEEc---ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc
Q 013210 234 --------RLG-------ADVVVHSISKF-ISGGADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 294 (447)
Q Consensus 234 --------~~g-------~di~~~S~sK~-~g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~ 294 (447)
.+. ..+++.|+||. ++.+|+|+ ||++. ++++++.+...... ....+.+.+.++..++.
T Consensus 272 ~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRi-G~~~~~~~p~~li~~l~~~~~~--~~~~~~~~Q~a~~~~l~ 348 (481)
T PTZ00377 272 ISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRG-GYFELTNIPPEVREQIYKLASI--NLCSNVVGQLMTGLMCN 348 (481)
T ss_pred ccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCce-EEEEEeCCCHHHHHHHHHHhhe--ecCCChHHHHHHHHHhC
Confidence 111 35788999997 68899999 99875 88999888776541 12344455555555553
Q ss_pred cC----Cc---HH----HHHHHHHHHHHHHHHHHHhC-CCeeeCC
Q 013210 295 RI----PH---LG----LRMKEHCHRALIFARRMKKL-GLKVLYP 327 (447)
Q Consensus 295 ~~----~~---l~----~~~~~~~~~~~~l~~~L~~~-~~~v~~p 327 (447)
.. .. .. ...++++++++.+.+.|+++ +..+..|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p 393 (481)
T PTZ00377 349 PPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPV 393 (481)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecC
Confidence 21 11 11 12234678888999999887 3355433
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-25 Score=221.63 Aligned_cols=242 Identities=12% Similarity=0.093 Sum_probs=173.3
Q ss_pred HHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..+|+.+|+++ | .+ .+++|+|+++|+.+++++++.+||.|++++|+|+.+...+. ..|.++..++.
T Consensus 74 ~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~ 148 (403)
T PRK08636 74 YKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFI-----LAGGNVHKMPL 148 (403)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCEEEEEec
Confidence 46777777765 4 24 59999999999999999999999999999999999987763 25777766643
Q ss_pred C-------CHH----HHHHhhc--cCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013210 173 S-------DHE----MVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---- 232 (447)
Q Consensus 173 ~-------d~~----~l~~~i~--~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---- 232 (447)
+ |++ .++++++ .++++++++++||||||.+.+ +++|+++|++|++++|+||+|..+.++.
T Consensus 149 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~ 228 (403)
T PRK08636 149 EYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTP 228 (403)
T ss_pred cccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCC
Confidence 1 444 4566553 257899999999999999987 5688889999999999999996554321
Q ss_pred --cCC----CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHH
Q 013210 233 --ARL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKE 305 (447)
Q Consensus 233 --~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~ 305 (447)
..+ +..+++.|+||.+|.+|.|+ ||+++++++++.+....... ....+++.+.++..++... +++....+.
T Consensus 229 ~~~~~~~~~~~~i~~~S~SK~~~~~GlRi-G~iv~~~~li~~~~~~~~~~-~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 306 (403)
T PRK08636 229 SILEVEGAKDVAVESYTLSKSYNMAGWRV-GFVVGNKKLVGALKKIKSWL-DYGMFTPIQVAATIALDGDQSCVEEIRET 306 (403)
T ss_pred ChhcCCCccccEEEEEecccccCCcccee-eeeeCCHHHHHHHHHHHHHh-cccCChHHHHHHHHHHhCcHHHHHHHHHH
Confidence 111 34567899999999999999 99999999998887655411 1122333444444444322 334455566
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH---HHHHHHHHHh
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE---EKANRLMNYL 369 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~---~~~~~l~~~l 369 (447)
+.++++.+.+.|++.+..+..|. .|.++|+.++.. .....+...+
T Consensus 307 ~~~~~~~l~~~L~~~~~~~~~p~-------------------~g~~~~~~l~~~~~~~~~~~l~~~l 354 (403)
T PRK08636 307 YRKRRDVLIESFANAGWELQKPR-------------------ASMFVWAKIPEPARHLGSLEFSKQL 354 (403)
T ss_pred HHHHHHHHHHHHHHCCCcccCCC-------------------cceEEEEECCCccCCCCHHHHHHHH
Confidence 78888999999988755443332 567999998732 1134565543
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-26 Score=223.50 Aligned_cols=293 Identities=15% Similarity=0.124 Sum_probs=203.5
Q ss_pred CchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 98 NPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
....+++++.+++++|++ .+++|+||++|+..++.+++++||+|+++.+.|.+.. +...... .|.++.+++.+
T Consensus 31 ~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~--~~~~~~~-~g~~~~~v~~~~ 107 (356)
T cd06451 31 LALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDR--WADMAER-YGADVDVVEKPW 107 (356)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHH--HHHHHHH-hCCCeEEeecCC
Confidence 344789999999999973 2789999999999999999999999999998877631 1111222 57788777643
Q ss_pred ----CHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCc
Q 013210 174 ----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISK 246 (447)
Q Consensus 174 ----d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK 246 (447)
|++++++.+ ++ ++++|++++++||+|.+.|+++|.++|+++|+++++|++| +...++....++|+++.|+||
T Consensus 108 ~~~~~~~~l~~~i-~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K 186 (356)
T cd06451 108 GEAVSPEEIAEAL-EQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQK 186 (356)
T ss_pred CCCCCHHHHHHHH-hccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCch
Confidence 789999999 55 8999999999999999999999999999999999999998 344455556689999999999
Q ss_pred cccCCCCeeEEEEEcChHHHHHHHH--Hhhhh-------------hhhcCCCccHH--HH-HHHHcc--CCcHHHHHHHH
Q 013210 247 FISGGADIIAGAVCGPANLVNSMMD--LHQGA-------------LMLLGPTMNPK--VA-FELSER--IPHLGLRMKEH 306 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~~~~~~~l~~--~~~~~-------------~~~~g~~~~~~--~a-~~~~~~--~~~l~~~~~~~ 306 (447)
+++++.. + |+++.++++++.+.. ...+. ....+++++.. .+ ..++.. ...+....++.
T Consensus 187 ~l~~p~g-~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~ 264 (356)
T cd06451 187 ALGAPPG-L-GPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARH 264 (356)
T ss_pred hccCCCC-c-ceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9997643 4 999999888777653 00000 00111222221 11 112211 12244556677
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcc
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
.++++++.+.|++.+..+..+. .. ..+.++++.++.......+.+.|... +| +.++.|..
T Consensus 265 ~~~~~~l~~~L~~~g~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~L~~~--~g-I~~~~g~~- 324 (356)
T cd06451 265 RRLAKALREGLEALGLKLLAKP--EL--------------RSPTVTAVLVPEGVDGDEVVRRLMKR--YN-IEIAGGLG- 324 (356)
T ss_pred HHHHHHHHHHHHHcCCeeccCc--cc--------------CCCceEEEECCCCCCHHHHHHHHHHh--CC-EEEecccc-
Confidence 8889999999988876554321 10 12335566665333356677777652 23 34333311
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+ ..++.||+|++ ..++++.++++.++|+++
T Consensus 325 -------~---------------~~~~~iRis~~-~~~~~e~v~~~~~~l~~~ 354 (356)
T cd06451 325 -------P---------------TAGKVFRIGHM-GEATREDVLGVLSALEEA 354 (356)
T ss_pred -------c---------------ccCCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 0 01368999999 889999999999998764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=223.52 Aligned_cols=290 Identities=15% Similarity=0.158 Sum_probs=202.7
Q ss_pred hHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHH
Q 013210 100 TVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM 177 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 177 (447)
...+|+++||+++|.+..+++++|++|+..++..+.. +|+.|+++...|.++...+. ..|.++..++.+|.++
T Consensus 92 ~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~-----~~g~~~~~~~~~d~~~ 166 (410)
T PRK13392 92 PHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIR-----RSGAEKQVFRHNDLAD 166 (410)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHH-----HcCCeEEEEeCCCHHH
Confidence 4679999999999998889999999999999987753 78888887777877765542 2577777776677777
Q ss_pred HHHhhc---cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCC-CCc--------cCCCCeEEEeCC
Q 013210 178 VNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLV-LSP--------ARLGADVVVHSI 244 (447)
Q Consensus 178 l~~~i~---~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~-~~~--------~~~g~di~~~S~ 244 (447)
+++.++ .+++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+ ++. ... .....|+++.|+
T Consensus 167 l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tl 246 (410)
T PRK13392 167 LEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTL 246 (410)
T ss_pred HHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEC
Confidence 776662 2578999999999999999999999999999999999999995 331 110 011468999999
Q ss_pred CccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCC-ccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013210 245 SKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK 323 (447)
Q Consensus 245 sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 323 (447)
||++|++| ||+++++++++.++....+.....+.+ ..+.++..++..++......+++.++++++.+.|++.+.+
T Consensus 247 sK~~g~~G----G~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 322 (410)
T PRK13392 247 AKAFGCLG----GYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANGIP 322 (410)
T ss_pred hHhhhccc----chhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999764 899889999988876654321111111 1222333344444444455577888899999999887654
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHH
Q 013210 324 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403 (447)
Q Consensus 324 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~ 403 (447)
+. +. .++++.+.++.......+.+.|.. ..| +.++.+. +|...
T Consensus 323 ~~-~~-------------------~~~~~~i~~~~~~~~~~~~~~L~~--~~G-I~v~~~~------~p~~~-------- 365 (410)
T PRK13392 323 VM-PS-------------------PSHIVPVMVGDPTLCKAISDRLMS--EHG-IYIQPIN------YPTVP-------- 365 (410)
T ss_pred CC-CC-------------------CCCEEEEEeCCHHHHHHHHHHHHH--hCC-EEEeeeC------CCCCC--------
Confidence 43 11 244776777654446677777742 123 3433321 12111
Q ss_pred HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 404 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 404 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
.....||||+. ...+++.++.+.++|+++.+.
T Consensus 366 ------~~~~~lRis~~-~~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 366 ------RGTERLRITPT-PLHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred ------CCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHH
Confidence 12368999998 788888888888888876543
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=220.71 Aligned_cols=276 Identities=13% Similarity=0.189 Sum_probs=192.2
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
.+...++|+.+|++++. +++++|+|+++++..+++++ .+ +.|+++.|.|+.+...+. ..|.++..++.+
T Consensus 53 ~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~-----~~g~~~~~~~~~~~ 125 (354)
T PRK06358 53 DPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYERALK-----AFDAEIEYAELTEE 125 (354)
T ss_pred CccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-CC-CcEEEecCChHHHHHHHH-----HcCCeeEEEeCccc
Confidence 34457899999999876 55999999999999999876 43 689999999998877663 257777666542
Q ss_pred -----CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---------cCCC
Q 013210 174 -----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---------ARLG 236 (447)
Q Consensus 174 -----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---------~~~g 236 (447)
| +++.+.+ ..++++|++++||||||.+.+ +++|+++|+++|+++|+|++|..+.++. ...+
T Consensus 126 ~~~~~d-~~~~~~~-~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~ 203 (354)
T PRK06358 126 TNFAAN-EIVLEEI-KEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFK 203 (354)
T ss_pred cCCCcc-HHHHHhh-ccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCC
Confidence 4 4555556 557999999999999999997 7788888999999999999996665432 1124
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~ 315 (447)
..+++.|+||.+|.+|.|+ ||++. ++.+++.+...+.. ...+.+.+.++..++...+++....+.+.++++.+.+
T Consensus 204 ~vi~~~S~SK~~gl~G~Ri-G~lv~~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~ 279 (354)
T PRK06358 204 NLIIIRAFTKFFAIPGLRL-GYGLTSNKNLAEKLLQMREP---WSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYN 279 (354)
T ss_pred CEEEEEechhhccCcchhh-eeeecCCHHHHHHHHHhCCC---CcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999 99987 46777888766541 1223333444444443323345566777888999999
Q ss_pred HHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccc
Q 013210 316 RMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 394 (447)
Q Consensus 316 ~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~ 394 (447)
.|++.+. .+..| .|+++++.++.. ..+.+.|... | +.+..|...
T Consensus 280 ~L~~~~~~~~~~~--------------------~g~f~~~~~~~~---~~~~~~l~~~---g-I~v~~~~~f-------- 324 (354)
T PRK06358 280 GLSEFKGIKVYKP--------------------SVNFIFFKLEKP---IDLRKELLKK---G-ILIRSCSNY-------- 324 (354)
T ss_pred HHhcCCCcEEcCC--------------------cceEEEEEcCch---HHHHHHHHHC---C-eEEEECCCC--------
Confidence 9987633 33322 245888988753 4566666642 3 444444211
Q ss_pred ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 395 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 395 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
.+..+++||||+|..++.+.+++.|.+
T Consensus 325 -------------~~~~~~~iRls~~~~~~~~~l~~~l~~ 351 (354)
T PRK06358 325 -------------RGLDENYYRVAVKSREDNKKLLKALEV 351 (354)
T ss_pred -------------CCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 012357899999922444444444443
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=222.74 Aligned_cols=215 Identities=16% Similarity=0.155 Sum_probs=161.4
Q ss_pred hHHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe-
Q 013210 100 TVLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV- 170 (447)
Q Consensus 100 ~~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v- 170 (447)
...++|+.+|++++ .+++++|+|+++|+.+++.+++++||+|+++.|+|+.+...+. ..|..+..+
T Consensus 71 g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~v~~~ 145 (398)
T PRK08363 71 GLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVK-----FYGGVPVEYR 145 (398)
T ss_pred CcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCEEEEec
Confidence 34678899998862 2469999999999999999999999999999999999887663 245555544
Q ss_pred CC------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cC--
Q 013210 171 DI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR-- 234 (447)
Q Consensus 171 ~~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~~-- 234 (447)
+. .|++++++++ ++++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..+.++. ..
T Consensus 146 ~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~ 224 (398)
T PRK08363 146 TIEEEGWQPDIDDIRKKI-TEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLT 224 (398)
T ss_pred cccccCCcCCHHHHHhhC-CcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcC
Confidence 22 2688899888 778999999999999999987 8899999999999999999996554321 11
Q ss_pred -CCCeEEEeCCCccccCCCCeeEEEEEc--ChHHHHHHHHHhhhh--hhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHH
Q 013210 235 -LGADVVVHSISKFISGGADIIAGAVCG--PANLVNSMMDLHQGA--LMLLGPTMNPKVAFELSER-IPHLGLRMKEHCH 308 (447)
Q Consensus 235 -~g~di~~~S~sK~~g~~g~~igG~l~~--~~~~~~~l~~~~~~~--~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~ 308 (447)
....+++.||||.++.+|.|+ ||++. ++++++.+....... .....+.+.+.++..++.. .+++.+..+++.+
T Consensus 225 ~~~~vi~~~SfSK~~~~~GlRi-G~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~ 303 (398)
T PRK08363 225 KDVPVIVMNGLSKVYFATGWRL-GYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKE 303 (398)
T ss_pred cCCcEEEEecchhccCCccceE-EEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 135688999999999999999 99886 677766665432211 0122344444444444443 3445666677889
Q ss_pred HHHHHHHHHHhCC
Q 013210 309 RALIFARRMKKLG 321 (447)
Q Consensus 309 ~~~~l~~~L~~~~ 321 (447)
+++.+.+.|++++
T Consensus 304 ~~~~l~~~L~~~~ 316 (398)
T PRK08363 304 RRDYIYKRLNEIP 316 (398)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998763
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=221.69 Aligned_cols=244 Identities=16% Similarity=0.124 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+++++ | .+ .+++|+|++++++.++..++++||+|++++|+|+.+...+. ..|.++..++
T Consensus 69 ~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~ 143 (395)
T PRK08175 69 IPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAV-----IAGAQVRSVP 143 (395)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCeEEEEe
Confidence 356788888765 2 24 59999999999999999999999999999999998776652 2577777776
Q ss_pred CC----CHHHHHHhhcc--CCceEEEEEcCCCCCccccCH---HHHHHHHHhcCCEEEEeCCCCCCCCCc------cC--
Q 013210 172 IS----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLSP------AR-- 234 (447)
Q Consensus 172 ~~----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~l---~~I~~la~~~gi~livD~~~~~~~~~~------~~-- 234 (447)
.+ +.++++++++. +++++|++++|+||||.+.+. ++|+++|++||+++|+|++|..+.++. ..
T Consensus 144 ~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~ 223 (395)
T PRK08175 144 LVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVP 223 (395)
T ss_pred cccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCC
Confidence 54 47888887732 478999999999999999986 688999999999999999995544321 11
Q ss_pred --CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHH
Q 013210 235 --LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRAL 311 (447)
Q Consensus 235 --~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~ 311 (447)
.+..+++.|+||.+|.+|.|+ ||+++++++++.+.+.+... ....+++.+.++...+... .++....+.++++++
T Consensus 224 ~~~~~~i~~~S~SK~~g~pGlRi-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 301 (395)
T PRK08175 224 GAKDVAVEFFTLSKSYNMAGWRI-GFMVGNPELVSALARIKSYH-DYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRD 301 (395)
T ss_pred CcccCEEEEeeccccccCcchhh-eeeeCCHHHHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 135678999999999999999 99999999999887765411 1222333444444444332 234455667788899
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---HHHHHHHHhh
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE---KANRLMNYLQ 370 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~---~~~~l~~~l~ 370 (447)
.+.+.|++.+..+..|. .|.++|+.++... ....+..++.
T Consensus 302 ~~~~~L~~~~~~~~~p~-------------------~g~~i~i~l~~~~~~~~~~~~~~~l~ 344 (395)
T PRK08175 302 VLVKGLHEAGWMVEMPK-------------------ASMYVWAKIPEPYAAMGSLEFAKKLL 344 (395)
T ss_pred HHHHHHHHcCCcccCCC-------------------EEEEEEEECCcccCCCCHHHHHHHHH
Confidence 99999988765443332 4679999997431 2456665543
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-25 Score=221.84 Aligned_cols=229 Identities=14% Similarity=0.102 Sum_probs=162.9
Q ss_pred HHHHHHHHHHh------CC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-
Q 013210 102 LNLSRQMAALE------GT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI- 172 (447)
Q Consensus 102 ~~l~~~ia~l~------g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~- 172 (447)
..+++.+|+++ +. +.+++|+|+++++..++++++++||+|+++.|+|+.+...+. ..|..+..++.
T Consensus 75 ~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~v~~~~~ 149 (404)
T PRK09265 75 FSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVS-----LSGGKPVHYLCD 149 (404)
T ss_pred HHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHH-----HcCCEEEEEecc
Confidence 57889999887 33 459999999999999999999999999999999998877763 14555544432
Q ss_pred ------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cCC--
Q 013210 173 ------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL-- 235 (447)
Q Consensus 173 ------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~~-- 235 (447)
.|++++++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..+.++. ..+
T Consensus 150 ~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 228 (404)
T PRK09265 150 EEAGWFPDLDDIRSKI-TPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAP 228 (404)
T ss_pred cccCCCCCHHHHHHhc-cccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCC
Confidence 2688999988 778999999999999999998 8889999999999999999996554321 111
Q ss_pred -CCeEEEeCCCccccCCCCeeEEEEEc--ChHH----HHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHH---HHHH
Q 013210 236 -GADVVVHSISKFISGGADIIAGAVCG--PANL----VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL---RMKE 305 (447)
Q Consensus 236 -g~di~~~S~sK~~g~~g~~igG~l~~--~~~~----~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~---~~~~ 305 (447)
...+++.|+||.+|.+|.|+ ||++. ++++ ++.+..... .....+.+.+.++..++...+.... ..++
T Consensus 229 ~~~vi~~~S~SK~~~~pGlRi-G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 305 (404)
T PRK09265 229 DLLCVTFNGLSKAYRVAGFRV-GWMVLSGPKKHAKGYIEGLDMLAS--MRLCANVPAQHAIQTALGGYQSINELILPGGR 305 (404)
T ss_pred CceEEEEecchhhccCcccce-EEEEEeCchHHHHHHHHHHHHHhc--cccCCCcHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 24578899999999999999 88874 4443 333322211 1123344455555555543333222 2245
Q ss_pred HHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 306 HCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
+.++++.+.+.|++++ ..+..|. .|.++|+.++.
T Consensus 306 ~~~~r~~~~~~L~~~~~~~~~~p~-------------------~g~~l~~~~~~ 340 (404)
T PRK09265 306 LYEQRDRAWELLNAIPGVSCVKPK-------------------GALYAFPKLDP 340 (404)
T ss_pred HHHHHHHHHHHHhcCCCCcccCCC-------------------cceEEEEEecc
Confidence 6777888888888763 2333332 46688888863
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-25 Score=222.30 Aligned_cols=288 Identities=15% Similarity=0.179 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHhC--------C--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 101 VLNLSRQMAALEG--------T--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
...|++.+|++++ . +.+++|+|+++|+.+++..++.+||.|+++.|.|+++...+.. + .|+++..+
T Consensus 97 ~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~---~-~g~~vv~v 172 (447)
T PLN02607 97 LKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---R-TGVKIVPI 172 (447)
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHh---c-CCcEEEEE
Confidence 3578888888763 1 3499999999999999999999999999999999998765521 2 46777666
Q ss_pred CCC-------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---
Q 013210 171 DIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--- 232 (447)
Q Consensus 171 ~~~-------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--- 232 (447)
+.+ |+++++++++. .++++|++++|+||||.+.+ +++|.++|++||+++|+||+|....++.
T Consensus 173 ~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f 252 (447)
T PLN02607 173 HCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEF 252 (447)
T ss_pred eCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc
Confidence 542 67888888732 47899999999999999997 6788899999999999999996543321
Q ss_pred ---c---------C-CCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc
Q 013210 233 ---A---------R-LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH 298 (447)
Q Consensus 233 ---~---------~-~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~ 298 (447)
. + .+..+++.|+||.||.+|.|+ ||++. ++++...++..... ...+...+..+...+...+.
T Consensus 253 ~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRv-G~ivs~n~~l~~~~~~~~~~---~~~s~~~q~~~~~~L~d~~~ 328 (447)
T PLN02607 253 VSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRMSSF---TLVSSQTQHLLASMLSDEEF 328 (447)
T ss_pred ccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceE-EEEEEcCHHHHHHHHHHhhc---CCCCHHHHHHHHHHhCCchh
Confidence 1 1 134688999999999999999 99987 66676666544321 12233344444444443222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------HHHHHHHHH
Q 013210 299 ----LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EKANRLMNY 368 (447)
Q Consensus 299 ----l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------~~~~~l~~~ 368 (447)
+....+++.++++.+.+.|++.+..+..| ..|.++|+.++.. +...++.+.
T Consensus 329 ~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~-------------------~ag~fvw~~L~~~~~~~~~~~e~~l~~~ 389 (447)
T PLN02607 329 TENYIRTNRERLRKRYEMIVQGLRRAGIECLKG-------------------NAGLFCWMNLSPLLETPTREGELALWDS 389 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC-------------------CeeEEEEEEchHhhcCCCchhHHHHHHH
Confidence 33455667888899999999876543322 2577999998621 222355544
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHhh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~~ 440 (447)
+.. +.| +.++.|..+ + ...++++||+++ .. +.++.+++|.+++++-+
T Consensus 390 ll~--~~g-V~v~pG~~f----------~-----------~~~~g~fRi~fa-~~~~~~l~~gl~Ri~~~l~~~~ 439 (447)
T PLN02607 390 ILR--EVK-LNISPGSSC----------H-----------CSEPGWFRVCFA-NMSEDTLEVALKRIHRFMDRRK 439 (447)
T ss_pred HHH--hCC-EEEcCcccc----------C-----------CCCCCEEEEEec-cCCHHHHHHHHHHHHHHHHHHH
Confidence 432 123 345555221 0 112589999999 63 34445555666665443
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=217.97 Aligned_cols=235 Identities=17% Similarity=0.110 Sum_probs=171.7
Q ss_pred CCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 95 RHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
++..+. ..|++.+|+.+|. +.+++|+|+++++.++. .++++|+ |++..|+|+.+...+. ..|.++..++
T Consensus 50 ~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~-~~~~~g~-v~v~~P~y~~y~~~~~-----~~g~~~~~v~ 121 (339)
T PRK06959 50 RLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALP-ALLPRGR-VGIAPLAYSEYAPAFA-----RHGHRVVPLD 121 (339)
T ss_pred hCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHH-HhcCCCe-EEEcCCCcHHHHHHHH-----HCCCEEEeec
Confidence 345555 7899999999986 45999999999998665 4567776 8899999999987773 3688888877
Q ss_pred CCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHH---HHhcCCEEEEeCCCCCCCCCc--c---CCCCeEEEeC
Q 013210 172 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFSPLVLSP--A---RLGADVVVHS 243 (447)
Q Consensus 172 ~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~l---a~~~gi~livD~~~~~~~~~~--~---~~g~di~~~S 243 (447)
.++ + .+ ...++++++++||||||.+.+.+++.++ |+++++++|+||+|..+...+ . +....+++.|
T Consensus 122 ~~~-~----~~-~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~S 195 (339)
T PRK06959 122 EAA-D----TL-PAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRS 195 (339)
T ss_pred ccc-h----hc-cccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEec
Confidence 654 2 23 3356799999999999999987666555 567899999999996654211 1 2245689999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK 323 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 323 (447)
|||.||.+|.|+ ||+++++++++.+...+.. ...+.+.+.++..++..........+++.++++++.+.|+++++.
T Consensus 196 fSK~~gl~GlRi-Gy~v~~~~li~~l~~~~~~---~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~ 271 (339)
T PRK06959 196 VGKFFGLAGVRA-GFVLAAPALLAALRDALGA---WTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAHGFA 271 (339)
T ss_pred ChhhcCCcchhe-EEEecCHHHHHHHHHhcCC---CCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999 9999999999999877552 223344444555555443344555677888999999999987654
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 324 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 324 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
+. + .+.++++.+++ ...+.+.|..
T Consensus 272 ~~-~--------------------~~~f~~~~~~~---~~~l~~~l~~ 295 (339)
T PRK06959 272 VH-A--------------------TPLFSWTDDPR---AAALHAALAR 295 (339)
T ss_pred cc-C--------------------cceEEEEeCCC---HHHHHHHHHh
Confidence 32 1 12377787753 3566777765
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-25 Score=219.31 Aligned_cols=241 Identities=15% Similarity=0.178 Sum_probs=172.2
Q ss_pred hHHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 100 TVLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 100 ~~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
....+++.+|++++ .+++++|+|++++++.++.+++.+||.|+++.|.|..+...+. . .|+++.+++
T Consensus 74 g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~----~-~g~~v~~v~ 148 (394)
T PRK06836 74 GYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVD----N-HGGKLVVVP 148 (394)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH----H-cCCEEEEEe
Confidence 34678888888863 3569999999999999999999999999999999999876653 2 688888876
Q ss_pred CC------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHh------cCCEEEEeCCCCCCCCCc----
Q 013210 172 IS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHD------KGVTVVVDNTFSPLVLSP---- 232 (447)
Q Consensus 172 ~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~------~gi~livD~~~~~~~~~~---- 232 (447)
.+ |++++++++ ++++++|++++|+||||.+.| +++|+++|++ ||+++|+|++|..+.++.
T Consensus 149 ~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~ 227 (394)
T PRK06836 149 TDTDTFQPDLDALEAAI-TPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP 227 (394)
T ss_pred cCCccCcCCHHHHHhhc-CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC
Confidence 53 689999999 778999999999999999987 5677788888 899999999996654431
Q ss_pred ---cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHH---HHH---HhhhhhhhcCCCccHHHHHHHHccCCcHHHHH
Q 013210 233 ---ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS---MMD---LHQGALMLLGPTMNPKVAFELSERIPHLGLRM 303 (447)
Q Consensus 233 ---~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~---l~~---~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 303 (447)
...+.++++.|+||.+|.+|.|+ ||+++++++.+. +.. ..........+...+.++...+.. ....
T Consensus 228 ~~~~~~~~~i~~~S~SK~~~~pGlRi-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~ 302 (394)
T PRK06836 228 YIFKYYDNSIVVYSFSKSLSLPGERI-GYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDA----TVDV 302 (394)
T ss_pred ChHHccCcEEEEecchhhccCcceee-EEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCC----hHHH
Confidence 12256899999999999999999 999988765432 111 111000011112222232222222 1234
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 304 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
+++.++++.+.+.|++++..+..|. .|.++|+.++.. ....+.+.|..
T Consensus 303 ~~~~~~r~~l~~~L~~~g~~~~~~~-------------------gg~~~~~~~~~~-~~~~~~~~l~~ 350 (394)
T PRK06836 303 SIYKRNRDLLYDGLTELGFECVKPQ-------------------GAFYLFPKSPEE-DDVAFCEKAKK 350 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCEeecCC-------------------ceEEEEEeCCCC-CHHHHHHHHHh
Confidence 5677888899999988766554332 356788877642 24556666654
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-25 Score=219.80 Aligned_cols=288 Identities=17% Similarity=0.197 Sum_probs=202.4
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCH
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~ 175 (447)
.+...++++++|+++|.+.+++++||++|+..++..+.. +|+.|++....|+++...+. ..|.++..++..|+
T Consensus 89 ~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~-----~~g~~~~~~~~~d~ 163 (406)
T PRK13393 89 NHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIR-----HSRAEKRIFRHNDP 163 (406)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHH-----HcCCeEEEeCCCCH
Confidence 346789999999999999999999999999999987755 67777777788877776652 24667777777788
Q ss_pred HHHHHhhcc---CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCC----c-----cCCCCeEEEe
Q 013210 176 EMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS----P-----ARLGADVVVH 242 (447)
Q Consensus 176 ~~l~~~i~~---~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~----~-----~~~g~di~~~ 242 (447)
+++++.++. +++++|++++++|++|.+.|+++|.++|+++|+++|+|++|+ ++... . .....|+++.
T Consensus 164 ~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~ 243 (406)
T PRK13393 164 ADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEG 243 (406)
T ss_pred HHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEE
Confidence 888877732 367899999999999999999999999999999999999984 33111 0 1113588899
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccH---HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP---KVAFELSERIPHLGLRMKEHCHRALIFARRMKK 319 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~---~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 319 (447)
|++|.+|+.| ||+++++++++.+......+. .+...++ .++..++..++......+++.++++++.+.|++
T Consensus 244 tlsKa~g~~G----G~~~~~~~~~~~l~~~~~~~~--~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~ 317 (406)
T PRK13393 244 TLAKAFGVMG----GYITGSAALCDFIRSFASGFI--FTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDK 317 (406)
T ss_pred eCchhhcccC----ceeeCCHHHHHHHHHhCcCce--ecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999754 899999998888876544221 2222222 223333333322223345667888999999987
Q ss_pred CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCC
Q 013210 320 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399 (447)
Q Consensus 320 ~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~ 399 (447)
.+..+. + +.|.++.+.+.+...+..+.+.|... .| +.++.+ .+|...
T Consensus 318 ~g~~~~-~-------------------~~~~i~~v~~~~~~~~~~l~~~L~~~--~G-i~v~~~------~~p~~p---- 364 (406)
T PRK13393 318 AGIPHL-P-------------------NPSHIVPVMVGDPVLCKQISDELLDR--YG-IYVQPI------NYPTVP---- 364 (406)
T ss_pred cCCCcC-C-------------------CCCCeEEEEeCCHHHHHHHHHHHHHh--CC-EEEEeE------CCCCCC----
Confidence 654322 1 23558888776544466777777541 23 333332 112111
Q ss_pred CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 400 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
...+.||||++ ..+++++++.+.++|+++.
T Consensus 365 ----------~g~~~iRis~~-~~~t~edid~l~~~l~~~~ 394 (406)
T PRK13393 365 ----------RGTERLRITPS-PLHTDADIEHLVQALSEIW 394 (406)
T ss_pred ----------CCCceEEEEEC-CCCCHHHHHHHHHHHHHHH
Confidence 11367999999 8888888998888888764
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-25 Score=219.41 Aligned_cols=291 Identities=16% Similarity=0.164 Sum_probs=200.3
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCH
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~ 175 (447)
.+...+|++++|+++|.+..+++++|++|+..++..+.. +++.|+.....|.+....+. ..|.++..++..|+
T Consensus 89 ~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~-----~~g~~~~~~~~~d~ 163 (402)
T TIGR01821 89 NIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIR-----HSGAEKFIFRHNDV 163 (402)
T ss_pred cHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHH-----HcCCeEEEECCCCH
Confidence 566789999999999998899999999999999988764 56666666666666555542 25667666777788
Q ss_pred HHHHHhhcc---CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCC-----cc--C--CCCeEEEe
Q 013210 176 EMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS-----PA--R--LGADVVVH 242 (447)
Q Consensus 176 ~~l~~~i~~---~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~-----~~--~--~g~di~~~ 242 (447)
+++++.++. +++++|++++|+||+|.+.|+++|.++|++||+++|+|++|+ ++... .. . ..+|+++.
T Consensus 164 ~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~ 243 (402)
T TIGR01821 164 AHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEG 243 (402)
T ss_pred HHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEE
Confidence 888887731 368999999999999999999999999999999999999984 32111 00 1 13689999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCc-cHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM-NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
|++|.+|+.| ||+++++++++.+...........+.++ ...++..++..++......+++.++++++.+.|++.+
T Consensus 244 t~sKa~g~~G----G~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g 319 (402)
T TIGR01821 244 TLAKAFGVVG----GYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALG 319 (402)
T ss_pred echhhhccCC----ceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999764 8999999998888765442211112222 2222323333333334445566788899999998876
Q ss_pred CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCC
Q 013210 322 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 401 (447)
Q Consensus 322 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~ 401 (447)
.++..+ .|+++.+.++....+..+.+.|... .| +.++.. .+|...
T Consensus 320 ~~~~~~--------------------~~~i~~i~~~~~~~a~~~~~~L~~~--~G-i~v~~~------~~p~~~------ 364 (402)
T TIGR01821 320 IPVIPN--------------------PSHIVPVIIGDAALCKKVSDLLLNK--HG-IYVQPI------NYPTVP------ 364 (402)
T ss_pred CCcCCC--------------------CCCEEEEEeCCHHHHHHHHHHHHhc--CC-EEEEeE------CCCCCC------
Confidence 543211 2447888776554566777776531 23 233221 112111
Q ss_pred HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 402 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 402 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
...+.||||+. ...++++++.+.++|+++.+
T Consensus 365 --------~g~~~lRis~~-~~~t~edi~~~~~~l~~~~~ 395 (402)
T TIGR01821 365 --------RGTERLRITPT-PAHTDKMIDDLVEALLLVWD 395 (402)
T ss_pred --------CCCceEEEEeC-CCCCHHHHHHHHHHHHHHHH
Confidence 12357999998 77888888888888877654
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-24 Score=221.78 Aligned_cols=286 Identities=17% Similarity=0.156 Sum_probs=196.0
Q ss_pred HHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 102 LNLSRQMAALEG----------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 102 ~~l~~~ia~l~g----------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..|++.||++++ .+.+++|+|+++++..++.+++.+||.|+++.|.|+.+...+.. ..|.++..++
T Consensus 89 ~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~----~~g~~~v~v~ 164 (468)
T PLN02450 89 PAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKW----RTGVEIVPIH 164 (468)
T ss_pred HHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhh----cCCcEEEEEe
Confidence 468888888863 24599999999999999999999999999999999998766521 1577777776
Q ss_pred CC-------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013210 172 IS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---- 232 (447)
Q Consensus 172 ~~-------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---- 232 (447)
.+ |++++++++++ .++++|++++||||||.+.+ +++|+++|++||+++|+||+|..+.++.
T Consensus 165 ~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~ 244 (468)
T PLN02450 165 CSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFV 244 (468)
T ss_pred cCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcc
Confidence 42 66888887732 37899999999999999987 5678888999999999999996543321
Q ss_pred --c------------CCCCeEEEeCCCccccCCCCeeEEEEEcChH-HHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC
Q 013210 233 --A------------RLGADVVVHSISKFISGGADIIAGAVCGPAN-LVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 297 (447)
Q Consensus 233 --~------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~-~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~ 297 (447)
. ..+..+++.|+||.++.+|.|+ ||++++++ +++.+..... . ...+.+.+.++..++....
T Consensus 245 s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRi-G~li~~~~~l~~~~~~~~~-~--~~~s~~~Q~a~~~~L~~~~ 320 (468)
T PLN02450 245 SVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRV-GAIYSNDEMVVSAATKMSS-F--GLVSSQTQYLLSALLSDKK 320 (468)
T ss_pred cHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccE-EEEEECCHHHHHHHHHHhh-c--CCCCHHHHHHHHHHhCCch
Confidence 1 1245789999999999999999 99998754 4555554432 1 1223444545444554432
Q ss_pred ----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------HHHHHHHH
Q 013210 298 ----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EKANRLMN 367 (447)
Q Consensus 298 ----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------~~~~~l~~ 367 (447)
.+....+++.++++.+.+.|++++..+..| ..|.++|+.++.. .....+..
T Consensus 321 ~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~-------------------~~g~flwi~l~~~~~~~~~~~~~~l~~ 381 (468)
T PLN02450 321 FTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKS-------------------NAGLFCWVDMRHLLKSNTFEAEMELWK 381 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC-------------------CceEEEEEEchHhcCcCCchHHHHHHH
Confidence 245566778999999999999886544322 2455889988621 11233444
Q ss_pred HhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC---HHHHHHHHHHHHHHh
Q 013210 368 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT---LDQRWSQFEKALSRM 439 (447)
Q Consensus 368 ~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~---~~~~i~~l~~al~~~ 439 (447)
.|.. +.| +.+.-|..+ . ...++++||+++ ..+ .++.++.|.+++.+.
T Consensus 382 ~ll~--~~g-V~v~PG~~f--------~-------------~~~~g~~Rl~f~-~~~~~~l~~~l~ri~~~l~~~ 431 (468)
T PLN02450 382 KIVY--EVK-LNISPGSSC--------H-------------CTEPGWFRVCFA-NMSEETLDLAMKRLKSFVESD 431 (468)
T ss_pred HHHH--hCC-EEEeCcccc--------C-------------CCCCCEEEEEec-CCCHHHHHHHHHHHHHHHHhc
Confidence 4432 123 455555221 0 012579999999 533 333445555555443
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-25 Score=224.55 Aligned_cols=284 Identities=18% Similarity=0.186 Sum_probs=190.0
Q ss_pred HHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 102 LNLSRQMAALEG----------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 102 ~~l~~~ia~l~g----------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.++++.||++++ .+.+++|+|+++|+.+++.+++.+||.|+++.|.|+++...+.. + .|+++..++
T Consensus 97 ~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~---~-~G~~vv~v~ 172 (496)
T PLN02376 97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRW---R-TGVEIIPVP 172 (496)
T ss_pred HHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHh---h-CCCEEEEEe
Confidence 468888887764 24599999999999999999999999999999999998765521 2 577887776
Q ss_pred CC-------CHHHHHHhhc-----cCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013210 172 IS-------DHEMVNSAIV-----QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---- 232 (447)
Q Consensus 172 ~~-------d~~~l~~~i~-----~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---- 232 (447)
.+ |+++++++++ ..++++|++++|+||||.+.+ +++|+++|++||+++|+||+|..+.++.
T Consensus 173 ~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~ 252 (496)
T PLN02376 173 CSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFV 252 (496)
T ss_pred CCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcc
Confidence 52 6778776531 247899999999999999997 5678889999999999999996654321
Q ss_pred --cCC-----------CCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc
Q 013210 233 --ARL-----------GADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH 298 (447)
Q Consensus 233 --~~~-----------g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~ 298 (447)
..+ +..+++.|+||.+|.+|.|+ ||++.+ +.+.+.++.... . ...+...+.++...+.....
T Consensus 253 si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRv-G~li~~~~~l~~~~~~~~~-~--~~vs~~~Q~a~~~~L~d~~~ 328 (496)
T PLN02376 253 SVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRV-GIVYSFNDSVVSCARKMSS-F--GLVSSQTQLMLASMLSDDQF 328 (496)
T ss_pred cHHHhhccccccccCCCeEEEEEeccccCCCCcceE-EEEEECCHHHHHHHHHHhh-c--CCCCHHHHHHHHHHhCChhH
Confidence 001 12356899999999999999 999885 555555444332 1 12233344444444443222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-------HHHHHHHH
Q 013210 299 ----LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-------EKANRLMN 367 (447)
Q Consensus 299 ----l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-------~~~~~l~~ 367 (447)
+.+..+++.++++.+.+.|++.++.+..| ..|.++|+.++.. +....+.+
T Consensus 329 ~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~-------------------~aG~flwi~l~~~~~~~~~~~~e~~l~~ 389 (496)
T PLN02376 329 VDNFLMESSRRLGIRHKVFTTGIKKADIACLTS-------------------NAGLFAWMDLRHLLRDRNSFESEIELWH 389 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC-------------------CceEEEEEEchhhhccCCchhHHHHHHH
Confidence 22334567888888999998876544322 2567999998631 11244555
Q ss_pred HhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC---HHHHHHHHHHHHH
Q 013210 368 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT---LDQRWSQFEKALS 437 (447)
Q Consensus 368 ~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~---~~~~i~~l~~al~ 437 (447)
.+... .| +.++-|..+ +. -.++++||+++ ..+ .++.++.|.+++.
T Consensus 390 ~ll~~--~g-V~v~pGs~F----------~~-----------~~~g~~Ri~fa-~~~~~~l~~al~rl~~~l~ 437 (496)
T PLN02376 390 IIIDK--VK-LNVSPGSSF----------RC-----------TEPGWFRICFA-NMDDDTLHVALGRIQDFVS 437 (496)
T ss_pred HHHHc--CC-EEEeCcccc----------CC-----------CCCCEEEEEee-CCCHHHHHHHHHHHHHHHH
Confidence 55431 23 455555221 00 12479999999 633 3333444555554
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=240.03 Aligned_cols=348 Identities=14% Similarity=0.077 Sum_probs=228.0
Q ss_pred cccccccCC-HHHH-HHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHh-cC
Q 013210 64 ASATFTVME-PETM-RRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE----AAYCTASGMSAISSVLMQL-CS 136 (447)
Q Consensus 64 ~att~~~~~-~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l-~~ 136 (447)
+++|+..+. ++++ ..++...++||.+.|..++.....++++|+.+|+++|++ .++||+|+|+|+++++.++ ++
T Consensus 41 Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~ 120 (805)
T PLN02724 41 AGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWS 120 (805)
T ss_pred CCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCC
Confidence 345554433 4444 445566778998878788888888999999999999973 3799999999999999887 67
Q ss_pred CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-------------C--HHHHHHhhc---------cCCceEEEE
Q 013210 137 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------------D--HEMVNSAIV---------QGRTKVLYF 192 (447)
Q Consensus 137 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------------d--~~~l~~~i~---------~~~t~lV~i 192 (447)
+||+|+++..+|++....+ ....+ .|+++.+++.+ + .++|++.+. .++|++|.+
T Consensus 121 ~gd~Iv~t~~eH~svl~~~-~~a~~-~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~ 198 (805)
T PLN02724 121 SESHFCYTLENHNSVLGIR-EYALE-KGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAF 198 (805)
T ss_pred CCCeEEEeeccccchHHHH-HHHHH-cCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEE
Confidence 8999999999998887554 44344 68888888754 1 144555421 246789999
Q ss_pred EcCCCCCccccCHHHHHHHHHhc--------CCEEEEeCCC--CCCCCCccCCCCeEEEeCCCcccc-CCCCeeEEEEEc
Q 013210 193 ESISNPTLAVANIPELSRLAHDK--------GVTVVVDNTF--SPLVLSPARLGADVVVHSISKFIS-GGADIIAGAVCG 261 (447)
Q Consensus 193 ~~~~NptG~v~~l~~I~~la~~~--------gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~ 261 (447)
.+.+|.+|.++|++.|..+++.. ++++++|.+| +..+++..++++|++++|+||++| +.| + |+++.
T Consensus 199 ~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G--~-G~L~v 275 (805)
T PLN02724 199 PSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTG--L-GALLV 275 (805)
T ss_pred EccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCC--c-eEEEE
Confidence 99999999999999775555532 3689999998 667778888899999999999999 445 4 88888
Q ss_pred ChHHHHHHHHHhhhhh--------------------hhcCCCccHHHHHHHHccCCc-----HHHHHHHHHHHHHHHHHH
Q 013210 262 PANLVNSMMDLHQGAL--------------------MLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARR 316 (447)
Q Consensus 262 ~~~~~~~l~~~~~~~~--------------------~~~g~~~~~~~a~~~~~~~~~-----l~~~~~~~~~~~~~l~~~ 316 (447)
++++.+.+.....++. ..-.+++.......+..+++. +....++..++.+++.+.
T Consensus 276 r~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~ 355 (805)
T PLN02724 276 RRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANS 355 (805)
T ss_pred ehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 8877766543211110 011112221111111112211 233445567888899999
Q ss_pred HHhCC-------CeeeCCCCCC-CchhHHHHHHhccCCCcCcEEEEEeCCHH-------HHHHHHHHhhccccccccccc
Q 013210 317 MKKLG-------LKVLYPGLED-HPHHELLKSMANKEYGFGGLLCLDMETEE-------KANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 317 L~~~~-------~~v~~p~~~~-~p~~~l~~~~~~~~~g~g~~~~~~l~~~~-------~~~~l~~~l~~~~~~g~~~vs 381 (447)
|++++ .+++.+.... .+ ...+++++|.+.+.. .+..+. .. +| |.+.
T Consensus 356 L~~l~~~~g~~~v~iyg~~~~~~~~------------~~r~~ivsFnv~~~~~~~v~~~~v~~l~---~~---~g-I~vR 416 (805)
T PLN02724 356 LRNLKHGNGAPVCVLYGNHTFKLEF------------HIQGPIVTFNLKRADGSWVGHREVEKLA---SL---SG-IQLR 416 (805)
T ss_pred HHhccCCCCCeEEEEcCCCCCCCCc------------ccccCEEEEEEEcCCCCEeCHHHHHHHH---Hh---cC-cEEe
Confidence 98764 2444332000 00 025779999987421 122222 22 34 6888
Q ss_pred ccCccccccccccccCCCCCHHHHH---------------hcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKA---------------LAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~---------------~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.|..|.- ++|..+..+..+.+. -.+...+.||+|+| ..++.++|+.|.++|++.
T Consensus 417 ~G~~Ca~---~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g-~ynt~eDvd~lv~~l~~~ 485 (805)
T PLN02724 417 TGCFCNP---GACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFG-YMSTFEDCQKFIDFIISS 485 (805)
T ss_pred eccccCc---hHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcC-ccCCHHHHHHHHHHHHHH
Confidence 8865532 122111112221111 01223489999999 999999999999999874
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=219.66 Aligned_cols=235 Identities=14% Similarity=0.160 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 100 TVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
....+++.+|+.++. +.+++|+|+++++.+++++++++||.|+++.|+|+.+..... ..|..+..++.+
T Consensus 66 ~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~-----~~g~~~~~~~l~~~~~ 140 (357)
T PRK14809 66 SHADLTAALADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSAR-----YHHGEVREYPVSKADD 140 (357)
T ss_pred CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEEecccCcC
Confidence 356899999999875 459999999999999999999999999999999986655442 145555554432
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc--CCEEEEeCCCCCCCCCcc------CCCCeEEEe
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVLSPA------RLGADVVVH 242 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~~~~------~~g~di~~~ 242 (447)
+.+++++.. +++++|++++||||||.+.+.+++.++++.. ++++|+||+|..+...+. ..+..+++.
T Consensus 141 ~~~~~~~~~~~~--~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~ 218 (357)
T PRK14809 141 FEQTADTVLDAY--DGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLR 218 (357)
T ss_pred CCcCHHHHHHhh--cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEe
Confidence 456665544 3589999999999999999988777777643 789999999966543221 124678999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
||||.+|.+|.|+ ||+++++++++.+...+.. ...+.+.+.++..++...+++....+.+.++++.+.+.|...
T Consensus 219 SfSK~~~~~GlRi-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-- 292 (357)
T PRK14809 219 TFSKAYGLAGLRL-GYAVVPEEWADAYARVNTP---FAASELACRAGLAALDDDEHVERTVETARWAREYIREELDAP-- 292 (357)
T ss_pred cchhHhcCcchhh-eeeecCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCc--
Confidence 9999999999999 9999999999888765431 222333334444444333334455566777777787777542
Q ss_pred eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 323 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 323 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
..| ..|.++++.+++ ...|.+.|..
T Consensus 293 --~~~-------------------~~g~f~~~~~~~---~~~~~~~l~~ 317 (357)
T PRK14809 293 --TWE-------------------SAGNFVLAEVGD---ASAVAEAAQE 317 (357)
T ss_pred --cCC-------------------CCCCEEEEECCC---HHHHHHHHHH
Confidence 112 145688888863 3456666654
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=214.18 Aligned_cols=237 Identities=16% Similarity=0.181 Sum_probs=174.9
Q ss_pred CchHHHHHHHHHHHhC-----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 98 NPTVLNLSRQMAALEG-----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g-----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+...++++.+|+.++ .+.+++|+|+++++.++++++ |.|++..|+|+.+...+. ..|.++..++.
T Consensus 55 ~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~~~~-----~~g~~~~~v~~ 125 (335)
T PRK14808 55 DSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAK-----AVGAKFLEVPL 125 (335)
T ss_pred CCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh----CcEEECCCCHHHHHHHHH-----HcCCeEEEecC
Confidence 3446789999999987 456999999999999999876 679999999999988773 36888888876
Q ss_pred CCHHHH-HHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-Cc----cCCCCeEEEeCCCc
Q 013210 173 SDHEMV-NSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-SP----ARLGADVVVHSISK 246 (447)
Q Consensus 173 ~d~~~l-~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-~~----~~~g~di~~~S~sK 246 (447)
++--.+ +..+ .++++|++++||||||.+.+.+++.+++ ++++++|+||+|..+.. .. ......+++.|+||
T Consensus 126 ~~~~~~~~~~~--~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK 202 (335)
T PRK14808 126 TKDLRIPEVNV--GEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSK 202 (335)
T ss_pred CCcCCCChhHc--cCCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechh
Confidence 411001 1113 3578999999999999999999999998 58999999999965531 11 12346799999999
Q ss_pred cccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013210 247 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY 326 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~ 326 (447)
.+|.+|.|+ ||+++++++++.+...+.. ...+.+++.++..++...+...+..+.+.++++.+.+.|++.+..+..
T Consensus 203 ~~~l~GlRv-G~~v~~~~~~~~l~~~~~~---~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~ 278 (335)
T PRK14808 203 AFSLAAQRI-GYVVSSEKFIDAYNRVRLP---FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRITD 278 (335)
T ss_pred hccCcccce-EEEEeCHHHHHHHHHhcCC---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC
Confidence 999999999 9999999999988766531 223334444444444433345556667778888999999887655432
Q ss_pred CCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 327 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
| .|+++++.++..+ ...+.+.|..
T Consensus 279 ~--------------------~g~f~~~~l~~~~-~~~~~~~l~~ 302 (335)
T PRK14808 279 S--------------------RGNFVFIFMEKEE-KERLLEHLRA 302 (335)
T ss_pred C--------------------CCeEEEEeCCCcc-HHHHHHHHHH
Confidence 2 3668899987433 3567777765
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=210.50 Aligned_cols=270 Identities=16% Similarity=0.171 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 100 TVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
....+|+.+|++++. +++++|+|+++++..+++ +.+| .+++..|.|..+...++ ..|.++..++.+
T Consensus 59 g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--l~~~-~viv~~P~y~~~~~~~~-----~~G~~i~~v~~~~~~~ 130 (349)
T PRK07908 59 DERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR--LRPR-RAAVVHPSFTEPEAALR-----AAGIPVHRVVLDPPFR 130 (349)
T ss_pred chHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh--cCCC-eEEEeCCCChHHHHHHH-----HcCCEEEeeccCcccC
Confidence 346899999999975 459999999999999887 4564 67778999988876652 268888777654
Q ss_pred -CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC----c--cCCCCeEEEeCCCc
Q 013210 174 -DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS----P--ARLGADVVVHSISK 246 (447)
Q Consensus 174 -d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~----~--~~~g~di~~~S~sK 246 (447)
|++ .+ +++++++++++|+||||.+.+.++|.++|+ ++.++|+||+|..+... . ...+..+++.|+||
T Consensus 131 ~d~~----~l-~~~~~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK 204 (349)
T PRK07908 131 LDPA----AV-PDDADLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTK 204 (349)
T ss_pred cChh----Hh-ccCCCEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcchhhccCCccccccccCCCEEEEeeccc
Confidence 333 34 457899999999999999999999999996 47889999998544211 1 12245688889999
Q ss_pred cccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHH-HHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013210 247 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE-LSE--RIPHLGLRMKEHCHRALIFARRMKKLGLK 323 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~ 323 (447)
.+|.+|.|+ ||++.++++++.+..... ....+...+.+.. .+. ..+++....+++.++++++.+.|++++.+
T Consensus 205 ~~~l~GlRi-G~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 279 (349)
T PRK07908 205 TWSLAGLRV-GYALGAPDVLARLTRGRA----HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGAR 279 (349)
T ss_pred ccCCcccee-eeeecCHHHHHHHHhcCC----CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 999999998 999999999988876544 1222222222222 222 12345556677888999999999887555
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHH
Q 013210 324 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403 (447)
Q Consensus 324 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~ 403 (447)
+..|. .|.++++.+++ ...+.+.|... | +.+.-|... +
T Consensus 280 ~~~p~-------------------~g~~~~~~~~~---~~~~~~~l~~~---g-I~v~~g~~f-----~----------- 317 (349)
T PRK07908 280 VVDPA-------------------AAPFVLVRVPD---AELLRKRLRER---G-IAVRRGDTF-----P----------- 317 (349)
T ss_pred eccCC-------------------CceEEEEECCc---HHHHHHHHHhC---C-EEEEECCCC-----C-----------
Confidence 54332 46799999875 24555556542 3 455544211 0
Q ss_pred HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013210 404 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 404 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
+..+++||||++..++.+.+++.|.+.
T Consensus 318 -----~~~~~~vRis~~~~~~~~~l~~al~~~ 344 (349)
T PRK07908 318 -----GLDPDYLRLAVRPRAEVPVLVQALAEI 344 (349)
T ss_pred -----CCCCCeEEEEeCCCccHHHHHHHHHHH
Confidence 123578999999324555555555443
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=215.39 Aligned_cols=209 Identities=14% Similarity=0.149 Sum_probs=157.3
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
.+....+|+.+|++++. +.+++|+|+++++..++..+ +||+|+++.|.|+.+...+. ..|.++..++.+
T Consensus 54 ~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~-----~~g~~~~~v~~~~~ 126 (337)
T PRK03967 54 HITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF--EGKHIVITPPTFGMYSFYAK-----LNGIPVIDVPLKED 126 (337)
T ss_pred CCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh--CCCeEEEeCCChHHHHHHHH-----HcCCeEEEeecCCC
Confidence 34557899999999985 45999999999999888765 69999999999987765542 267787777653
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cCCCCeEEEeCCC
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVVVHSIS 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~-----~~~g~di~~~S~s 245 (447)
|++++++.+ ++++++++++|+||||.+.+.++|.++++ +++++|+|++|..+.... ......+++.|+|
T Consensus 127 ~~~d~~~l~~~~--~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~S 203 (337)
T PRK03967 127 FTIDGERIAEKA--KNASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFS 203 (337)
T ss_pred CCcCHHHHHHhc--cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecch
Confidence 678888755 47889999999999999999999999995 799999999996553211 1124578999999
Q ss_pred ccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 246 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
|.||.+|.|+ ||+++++++++.+...... ...+.+.+.++..++...+.+.+..+.+.++++.+.+.|.+.
T Consensus 204 K~~~l~GlRi-G~iv~~~~~i~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 274 (337)
T PRK03967 204 KAFGLAGIRA-GYAIANEEIIDALYRIKPP---FSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY 274 (337)
T ss_pred Hhhcchhhhh-eeeecCHHHHHHHHhhcCC---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999 9999999999888876541 122233344444444333334455556667777788877653
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=215.81 Aligned_cols=311 Identities=14% Similarity=0.122 Sum_probs=213.8
Q ss_pred ccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcC----C
Q 013210 65 SATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCS----S 137 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~----~ 137 (447)
++|+..|.+ +.+.+.+...++++.. |. ......+++++.+|+++|.+ .+++++||++|+..++.++.. +
T Consensus 28 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~ 103 (371)
T PRK13520 28 MCTEPHPIARKAHEMFLETNLGDPGL---FP-GTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAE 103 (371)
T ss_pred eecCchHHHHHHHHHHHhcCCCCccc---Cc-cHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCC
Confidence 356666664 7777777665565432 21 12334578999999999975 378999999999999877643 4
Q ss_pred CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHH
Q 013210 138 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212 (447)
Q Consensus 138 gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la 212 (447)
+++|+++.++|.++...+. . .|.++..++.+ |+++|++++ ++++++|++.+++|++|.+.|+++|.++|
T Consensus 104 ~~~vl~~~~~h~s~~~~~~----~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~vi~~~~~~~tG~~~~l~~I~~l~ 177 (371)
T PRK13520 104 KPNIVVPESAHFSFDKAAD----M-LGVELRRAPLDDDYRVDVKAVEDLI-DDNTIGIVGIAGTTELGQVDPIPELSKIA 177 (371)
T ss_pred CceEEecCcchHHHHHHHH----H-cCceEEEecCCCCCcCCHHHHHHHH-hhCCEEEEEEcCCcCCcccCCHHHHHHHH
Confidence 7899999999988766552 2 57788877753 899999999 67788888888899999999999999999
Q ss_pred HhcCCEEEEeCCCCCCC--C-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhh-----
Q 013210 213 HDKGVTVVVDNTFSPLV--L-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM----- 278 (447)
Q Consensus 213 ~~~gi~livD~~~~~~~--~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~----- 278 (447)
+++|+++|+|++|+.+. + +....++|.++.|.||+..+ +.++|++++.++++++.+..... +..
T Consensus 178 ~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a-~~~~G~~~~~~~~~~~~l~~~~~-~~~~~~~~ 255 (371)
T PRK13520 178 LENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLA-PIPAGGILFRDESYLDALAVDTP-YLTSKKQA 255 (371)
T ss_pred HHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCc-cCCceEEEEcCHHHHHhhcccCc-cccCCCCc
Confidence 99999999999995332 1 11234789999999998654 34565566677777766542111 000
Q ss_pred -hcCC--CccHHHHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 279 -LLGP--TMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 279 -~~g~--~~~~~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|+ ......+..++..+ ..+.++.++..++++++.+.|++.++++..+. ..+++.
T Consensus 256 ~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~v~ 316 (371)
T PRK13520 256 TLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEP-------------------VLNIVA 316 (371)
T ss_pred ceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCC-------------------CceEEE
Confidence 0111 11222333333332 23455778889999999999988876633221 123888
Q ss_pred EEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 354 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
+.+++ ...+.+.|... | +.++.. . .++.+|+|++ ..+++++++.+.
T Consensus 317 ~~~~~---~~~v~~~L~~~---g-i~v~~~-----------~---------------~~~~iRis~~-~~~t~edi~~~~ 362 (371)
T PRK13520 317 FDDPN---PDEVREKLRER---G-WRVSVT-----------R---------------CPEALRIVCM-PHVTREHIENFL 362 (371)
T ss_pred EecCC---HHHHHHHHHHC---C-ceeccC-----------C---------------CCCEEEEEEE-CCCCHHHHHHHH
Confidence 88763 45666666642 2 333321 0 1357999999 888999999999
Q ss_pred HHHHHhh
Q 013210 434 KALSRMQ 440 (447)
Q Consensus 434 ~al~~~~ 440 (447)
++|+++.
T Consensus 363 ~~l~~~~ 369 (371)
T PRK13520 363 EDLKEVK 369 (371)
T ss_pred HHHHHHh
Confidence 9987753
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=215.34 Aligned_cols=291 Identities=17% Similarity=0.188 Sum_probs=200.8
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCC
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d 174 (447)
..+...++++++|+++|.+..+++++|++|+..++..+.. +++.|+.....|.+....+. ..+.++..++..|
T Consensus 89 ~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~-----~~~~~~~~~~~~d 163 (407)
T PRK09064 89 TNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIR-----RSRCEKHIFRHND 163 (407)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHH-----HcCCcEEEECCCC
Confidence 3677899999999999988889999999999999887654 66666666666665555442 1456666677778
Q ss_pred HHHHHHhhcc---CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCC-C------ccC--CCCeEEE
Q 013210 175 HEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVL-S------PAR--LGADVVV 241 (447)
Q Consensus 175 ~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~-~------~~~--~g~di~~ 241 (447)
++++++.++. +++++|++++++|++|.+.|+++|.++|+++|+++|+||+|+ ++.. . ... ...|+++
T Consensus 164 ~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~ 243 (407)
T PRK09064 164 VAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIE 243 (407)
T ss_pred HHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEE
Confidence 8888887731 568999999999999999999999999999999999999994 3211 1 011 1358999
Q ss_pred eCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHH---HHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013210 242 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF---ELSERIPHLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~---~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 318 (447)
.|+||.+|+.| ||+++++++++.+........ .....++..+. ..+..++......+++.++++++.+.|+
T Consensus 244 ~t~sKa~g~~G----G~~~~~~~~~~~l~~~~~~~~--~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~ 317 (407)
T PRK09064 244 GTLAKAFGVMG----GYIAGSAALVDAVRSYAPGFI--FTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALD 317 (407)
T ss_pred EecchhhhccC----ceEecCHHHHHHHHHhCcccc--ccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999764 899999998888766543221 12222222222 2222222223345678889999999998
Q ss_pred hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCC
Q 013210 319 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 398 (447)
Q Consensus 319 ~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~ 398 (447)
+.+.++..+ .++++.+.+++...+..+.+.|... .| +.+... ..|...
T Consensus 318 ~~g~~~~~~--------------------~~~iv~i~~~~~~~~~~l~~~L~~~--~g-i~v~~~------~~p~~~--- 365 (407)
T PRK09064 318 AAGIPVMPN--------------------ESHIVPVMVGDPEKCKKASDMLLEE--HG-IYVQPI------NYPTVP--- 365 (407)
T ss_pred HcCCCCCCC--------------------CCCEEEEEeCCHHHHHHHHHHHHHh--CC-EEEeeE------CCCCCC---
Confidence 876543211 2447888887544566777776431 23 333221 112110
Q ss_pred CCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 399 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 399 ~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
...+.||||++ ..+++++++.+.++|+++.+.
T Consensus 366 -----------~~~~~lRis~~-~~~t~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 366 -----------RGTERLRITPT-PFHTDEMIDHLVEALVEVWAR 397 (407)
T ss_pred -----------CCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHH
Confidence 11357999999 888888899888888876543
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=221.05 Aligned_cols=245 Identities=11% Similarity=0.120 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHHh------C--CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee-----
Q 013210 100 TVLNLSRQMAALE------G--TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT----- 166 (447)
Q Consensus 100 ~~~~l~~~ia~l~------g--~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~----- 166 (447)
....||+.+|+++ + .+.+++|+|+++++.+++ .++.+||+|++.+|+|+.+...+.. .|.+
T Consensus 77 G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~-----~g~~~~~~~ 150 (409)
T PRK07590 77 GYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVM-----AGRTGEANE 150 (409)
T ss_pred CCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHH-----cCCcccccc
Confidence 3457888888874 2 356999999999999864 5678999999999999999877732 3443
Q ss_pred ------EEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----
Q 013210 167 ------TTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----- 232 (447)
Q Consensus 167 ------~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~----- 232 (447)
+..++.+.-+.+...+..+++++|++++|+||||.+++ +++|+++|++||+++|+||+|..+.++.
T Consensus 151 ~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~ 230 (409)
T PRK07590 151 DGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHS 230 (409)
T ss_pred cccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcc
Confidence 66666531112222232367899999999999999987 5578888999999999999996554321
Q ss_pred -cCC----CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHH-----------HHHhhhhhhhcCCCccHHHHHHHHcc-
Q 013210 233 -ARL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSM-----------MDLHQGALMLLGPTMNPKVAFELSER- 295 (447)
Q Consensus 233 -~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l-----------~~~~~~~~~~~g~~~~~~~a~~~~~~- 295 (447)
..+ +..+++.||||.+|.+|.|+ ||+++++++++.+ ............+.+.+.++..++..
T Consensus 231 ~~~~~~~~~~vi~~~SfSK~~~~pGlRi-G~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~ 309 (409)
T PRK07590 231 IYEIEGARECAIEFRSFSKTAGFTGTRC-AYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPE 309 (409)
T ss_pred hhhCCCcccceEEEecCccccCCcCcee-EEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCC
Confidence 111 24688999999999999999 9999999888632 11111000011222334444343432
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013210 296 -IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 370 (447)
Q Consensus 296 -~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~ 370 (447)
..++....+.+.++++.+.+.|++++..+..|. .|.++|+.++.......+...+.
T Consensus 310 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-------------------g~~f~wi~~~~~~~~~~~~~~l~ 366 (409)
T PRK07590 310 GKAQIKELIDYYMENAKIIREGLESAGFEVYGGV-------------------NAPYIWVKTPDGMSSWDFFDKLL 366 (409)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC-------------------cceEEEEECCCCCCHHHHHHHHH
Confidence 234455566788899999999998765443221 35689999974322345555543
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=216.25 Aligned_cols=230 Identities=16% Similarity=0.151 Sum_probs=160.4
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI- 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~- 172 (447)
.++|+.+|+++ | .+++++|+|+++|+..++. ++.+||.|++..|+|+.+..... . ..|..+..++.
T Consensus 76 ~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~-~---~~g~~~v~v~~~ 150 (433)
T PRK06855 76 LETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEA-A---HAGYPPVTYRLD 150 (433)
T ss_pred HHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHH-H---hcCCeEEEEecc
Confidence 56778888775 3 2469999999999999985 78899999999999998653321 1 13555555432
Q ss_pred ------CCHHHHHHhhcc-CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cCC-
Q 013210 173 ------SDHEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------ARL- 235 (447)
Q Consensus 173 ------~d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~~- 235 (447)
.|+++|+++++. ++++++++++|+||||.+.+ +++|+++|++||+++|+||+|..+.++. ..+
T Consensus 151 ~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~ 230 (433)
T PRK06855 151 PENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVI 230 (433)
T ss_pred cccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHc
Confidence 278999998832 46899999999999999997 5678888999999999999997665421 111
Q ss_pred --CCeEEEeCCCccccCCCCeeEEEEEcC-----hH---HHHHHHHHhhhhhhhcCCCccHHHHHHHHccC---CcHHHH
Q 013210 236 --GADVVVHSISKFISGGADIIAGAVCGP-----AN---LVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLR 302 (447)
Q Consensus 236 --g~di~~~S~sK~~g~~g~~igG~l~~~-----~~---~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~~ 302 (447)
+..+++.|+||.++.+|+|+ ||++.+ +. +++.+..... .....+.+.+.++..++... +++.+.
T Consensus 231 ~~~~~I~~~S~SK~~~~pGlRi-G~ii~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~ 307 (433)
T PRK06855 231 GDVPGIALKGISKELPWPGSRC-GWIEVYNADKDEVFKKYINSILNAKM--IEVCSTTLPQMAIPRIMSHPEYKNYLKER 307 (433)
T ss_pred CcCCeEEEecCccccCCCcceE-EEEEEeCCchhhHHHHHHHHHHHhhc--cccCCChHHHHHHHHhhcCCcHHHHHHHH
Confidence 24589999999999999999 999862 22 2233322221 11223444454544444432 235556
Q ss_pred HHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 303 MKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
.+.++++++.+.+.|++.+ ..+..|. .|.++|+.++.
T Consensus 308 ~~~~~~r~~~~~~~L~~~~~~~~~~p~-------------------gg~~~w~~l~~ 345 (433)
T PRK06855 308 NKRYEKRSNIAYEKLKDVPGLKVNRTN-------------------GAFYMTVVFED 345 (433)
T ss_pred HHHHHHHHHHHHHHHhcCCCeeccCCC-------------------eeEEEeecccc
Confidence 6778899999999998763 2333222 46688988874
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=214.19 Aligned_cols=285 Identities=17% Similarity=0.212 Sum_probs=197.1
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC-CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~-~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
.++...++|+.+|+++|.+.++++++|++++..++.+++. +||+|++++++|.+.+... .... ..|.++.+++.+
T Consensus 38 ~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~-~~g~~~~~v~~~~~ 115 (353)
T PLN02721 38 YDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENG-GIST-LGGVHPRTVKNNED 115 (353)
T ss_pred CCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhccc-chhh-hcCceeEecCCCcC
Confidence 3566789999999999998899999999999888888777 8999999999986555420 0111 268888877643
Q ss_pred ---CHHHHHHhhcc------CCceEEEEEcC-CCCCccccC---HHHHHHHHHhcCCEEEEeCCCC--CC---CCCcc--
Q 013210 174 ---DHEMVNSAIVQ------GRTKVLYFESI-SNPTLAVAN---IPELSRLAHDKGVTVVVDNTFS--PL---VLSPA-- 233 (447)
Q Consensus 174 ---d~~~l~~~i~~------~~t~lV~i~~~-~NptG~v~~---l~~I~~la~~~gi~livD~~~~--~~---~~~~~-- 233 (447)
|++++++++.. +++++|+++++ +||+|.+.| +++|.++|+++|+++|+|++|. .. ..++.
T Consensus 116 ~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~ 195 (353)
T PLN02721 116 GTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRL 195 (353)
T ss_pred CCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHH
Confidence 89999999832 58999999875 678999876 7899999999999999999872 11 12222
Q ss_pred CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCcc--HHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 234 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN--PKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 234 ~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~--~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
..++|.++.|+||+++++ +|+++++++++++.+...+. ..+..+. ...+...+..++...+++++..++++
T Consensus 196 ~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 268 (353)
T PLN02721 196 VKAADSVSVCLSKGLGAP---VGSVIVGSKSFIRKAKRLRK----TLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAK 268 (353)
T ss_pred hhhCCEEEEecccccCCc---eeeEEecCHHHHHhHHHHHH----hcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 226889999999999864 44567888998887766544 1221111 11222222233343445555667788
Q ss_pred HHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccCcccc
Q 013210 312 IFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETL 388 (447)
Q Consensus 312 ~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~~~s~ 388 (447)
++.+.|++++ ..+.... | .++++++.++.. .....+.+.|... | +.+..+
T Consensus 269 ~l~~~L~~~~~~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~L~~~---g-i~v~~~----- 321 (353)
T PLN02721 269 LLAEGLNQIKGLRVNVAA----V--------------ETNIVYFDITDGSRITAEKLCKSLEEH---G-VLLMPG----- 321 (353)
T ss_pred HHHHHHHhCCCcEEecCC----c--------------cceEEEEEccCCccccHHHHHHHHHhC---C-cEEecC-----
Confidence 9999998873 3331111 1 245888888642 2356777777753 3 333322
Q ss_pred ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 389 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
..+.||++++ ...+++.++.+.++|+++-
T Consensus 322 ----------------------~~~~lR~~~~-~~~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 322 ----------------------NSSRIRVVTH-HQISDSDVQYTLSCFQQAA 350 (353)
T ss_pred ----------------------CCceEEEEec-CcCCHHHHHHHHHHHHHHh
Confidence 1357999999 7778888888888887653
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=207.70 Aligned_cols=308 Identities=18% Similarity=0.231 Sum_probs=228.7
Q ss_pred HHHHHhhcCC-CCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHH
Q 013210 74 ETMRRMFAGE-LGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH 152 (447)
Q Consensus 74 ~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~ 152 (447)
+++.+.++.. .|-..+...+| ..+...+||++||+++|.+.+++++||..||..++.++++++|-|+.....|-+.+
T Consensus 60 ~a~~~~~~~~g~g~~gsR~i~G--~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASii 137 (388)
T COG0156 60 EAAKAAIRRYGVGAGGSRLISG--TSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASII 137 (388)
T ss_pred HHHHHHHHHhCCCCCCcCcccC--CcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHH
Confidence 4444444432 22222333344 45777899999999999999999999999999999999999999999999998887
Q ss_pred HHHHhhcCcccCeeEEEeCCCCHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-C
Q 013210 153 ALLTHFFPRACNITTTFVDISDHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-S 226 (447)
Q Consensus 153 ~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~ 226 (447)
+.++ ..+.++..+..+|+++||+.+++. +.++|+++.+.++.|.+.||++|.+++++|++++++||+| .
T Consensus 138 dG~r-----ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~ 212 (388)
T COG0156 138 DGIR-----LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAV 212 (388)
T ss_pred HHHH-----hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccc
Confidence 7762 367788888889999999998431 3589999999999999999999999999999999999999 3
Q ss_pred CCCC-C---------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHH---HH
Q 013210 227 PLVL-S---------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE---LS 293 (447)
Q Consensus 227 ~~~~-~---------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~---~~ 293 (447)
++.. . ...-.+|++++|++|.+|.. ||++.++..+++.+....... .+.+.++|..+.. .+
T Consensus 213 Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~----Gg~v~g~~~~~d~L~~~ar~~--ifStalpP~~aaa~~~al 286 (388)
T COG0156 213 GVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSS----GGYIAGSAALIDYLRNRARPF--IFSTALPPAVAAAALAAL 286 (388)
T ss_pred cccCCCCccHHHHhCCCCccceEEEEEchhhhccc----CceeeCcHHHHHHHHHhCCce--eccCCCCHHHHHHHHHHH
Confidence 3321 1 11123589999999999954 599999999999988765544 4444555554333 34
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013210 294 ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA 373 (447)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~ 373 (447)
+.++...++.++++++..++.+.++..++.+. +. ..+++.+.+.+...+..+...|...
T Consensus 287 ~~l~~~~~~r~~L~~~~~~~~~~~~~~~~~~~-~s-------------------~s~I~pv~~gd~~~a~~~s~~l~~~- 345 (388)
T COG0156 287 RILEEGPERRERLQELAAFFRSLLKALGLVLL-PS-------------------ESPIIPVILGDEERALEASRALLEE- 345 (388)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHhcCCccC-CC-------------------CCCeeeeEeCCHHHHHHHHHHHHHC-
Confidence 44455566788888888888877766555331 11 2339999999877788888877752
Q ss_pred ccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 374 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 374 ~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
| +. .+.+.+|.... ....||+|+. ..++++.|+.+.++|.++
T Consensus 346 --G-i~------v~~i~~PTVp~--------------gtarlRi~lt-a~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 346 --G-IY------VSAIRPPTVPK--------------GTARLRITLT-AAHTEEDIDRLAEALSEV 387 (388)
T ss_pred --C-ee------EeeecCCCCCC--------------CcceEEEEec-CCCCHHHHHHHHHHHHhh
Confidence 2 22 22334454431 2367999999 999999999999998764
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=213.56 Aligned_cols=276 Identities=13% Similarity=0.069 Sum_probs=188.6
Q ss_pred hHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 100 TVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
....+++.||++++. +.+++|+|+++++.++++++. +||.|+++.|+|+.+...+. ..|.++..++.+
T Consensus 58 ~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~ 131 (360)
T PRK07392 58 DYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA-QLRAVYLITPAFGDYRRALR-----AFGATVKELPLPLDQP 131 (360)
T ss_pred CHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHHHHHH-----HcCCeEEEEecccccC
Confidence 346899999999876 459999999999999998764 68899999999999987773 257777766543
Q ss_pred ------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc-----c----CCCCe
Q 013210 174 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-----A----RLGAD 238 (447)
Q Consensus 174 ------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~-----~----~~g~d 238 (447)
+++++++.. .+++++++++||||||.+.+.++|.++++++++ +|+||+|..+..+. . .....
T Consensus 132 ~~~~~~~~~~~~~~~--~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~v 208 (360)
T PRK07392 132 SPGLTLRLQTLPPQL--TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNL 208 (360)
T ss_pred CcccccCHHHHHHhc--cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCE
Confidence 345554433 468899999999999999999999999999985 66699996654321 1 12457
Q ss_pred EEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013210 239 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 239 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 318 (447)
+++.|+||.+|.+|.|+ ||+++++++++.+...+.. ...+.+.+.++..++..........+.+.++++++.+.|+
T Consensus 209 i~i~S~SK~~~l~GlRi-G~~v~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 284 (360)
T PRK07392 209 IILRSLTKFYSLPGLRL-GYAIAHPDRLQRWQQWRDP---WPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLA 284 (360)
T ss_pred EEEEechhhhcCCchhe-eeeeCCHHHHHHHHhhCCC---CCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999998887655431 1223333444444443322233334557788888999998
Q ss_pred hCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh-hcccccccccccccCcccccccccccc
Q 013210 319 KLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSST 396 (447)
Q Consensus 319 ~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l-~~~~~~g~~~vs~G~~~s~~~~~a~~~ 396 (447)
+++. .+ .| +.|.++++.++. ...++...+ .. .| +.+..|... .
T Consensus 285 ~~~~~~~-~~-------------------~~~~fl~~~~~~--~~~~l~~~ll~~---~g-v~v~pg~~f--------~- 329 (360)
T PRK07392 285 SLPGLTP-LP-------------------SAANFLLVQSQG--SALQLQEKLLQQ---HR-ILIRDCLSF--------P- 329 (360)
T ss_pred hCCCcEE-CC-------------------CCCCEEEEEcCC--CHHHHHHHHHhh---CC-EEEEeCCCC--------C-
Confidence 7633 33 22 135688888764 244565553 33 23 344444211 0
Q ss_pred CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 397 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 397 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..++++|||++ ..+ ..+.|.++|+++
T Consensus 330 ------------~~~~~~iRi~~~-~~~---~~~~l~~al~~~ 356 (360)
T PRK07392 330 ------------ELGDRYFRVAVR-TEA---ENQRLLEALAAI 356 (360)
T ss_pred ------------CCCCCEEEEEeC-CHH---HHHHHHHHHHHH
Confidence 112579999999 532 223555555544
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-24 Score=212.44 Aligned_cols=295 Identities=16% Similarity=0.121 Sum_probs=202.4
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
|.+-+...+..+++++++++++|.+..+++++|++++..++.+++++||.|+++.+.|+++...+. ..|.++..+
T Consensus 70 ~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~-----~~g~~~~~~ 144 (385)
T TIGR01825 70 VRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLR-----LTKATKKIY 144 (385)
T ss_pred cCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHH-----hcCCceEEe
Confidence 333344467788999999999998777777788999999999999999999999999998866552 246676666
Q ss_pred CCCCHHHHHHhhcc---CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC----------ccCCCC
Q 013210 171 DISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS----------PARLGA 237 (447)
Q Consensus 171 ~~~d~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~----------~~~~g~ 237 (447)
+..|++++++.++. +++++|++++++|++|.+.|+++|.++|++||+++|+|++|+.+.+. ....++
T Consensus 145 ~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 224 (385)
T TIGR01825 145 KHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKV 224 (385)
T ss_pred CCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCC
Confidence 66788888887732 36899999999999999999999999999999999999999433211 112468
Q ss_pred eEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCcc-HHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN-PKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~-~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
|+++.|+||+++++| ||+++++++++.+..............+. ..++..++..+....+..++..++++++.+.
T Consensus 225 ~i~~~s~sK~~~~~g----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~ 300 (385)
T TIGR01825 225 DIQVGTLSKAIGVVG----GYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAG 300 (385)
T ss_pred cEEEEeccHHhhcCC----CEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 899999999998654 89999999888886543211111111112 2222233332222223556677888999999
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccccc
Q 013210 317 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 396 (447)
Q Consensus 317 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~ 396 (447)
|++.+.++..|. +.++.+.++.......+...|... | +.++.+.. +..
T Consensus 301 L~~~g~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~L~~~---g-i~v~~~~~------~~~-- 348 (385)
T TIGR01825 301 LGKLGYDTGGSE--------------------TPITPVVIGDEKAAQEFSRRLFDE---G-IFAQSIVF------PTV-- 348 (385)
T ss_pred HHHcCCCCCCCC--------------------CCEEEEEECCHHHHHHHHHHHHHC---C-cEEcccCC------CCC--
Confidence 988765543221 236667766443456777777652 3 33332211 100
Q ss_pred CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 397 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 397 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
......||+++. ...+++.++.+.++|+++
T Consensus 349 ------------~~~~~~iRi~~~-~~~~~e~i~~~~~~l~~~ 378 (385)
T TIGR01825 349 ------------PRGTARIRNIPT-AEHTKDDLDQALDAYEKV 378 (385)
T ss_pred ------------CCCCceEEEEEc-CCCCHHHHHHHHHHHHHH
Confidence 012367999998 667777777777766655
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=215.26 Aligned_cols=236 Identities=17% Similarity=0.183 Sum_probs=168.2
Q ss_pred HHHHHHHHHHh----C-----CCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 102 LNLSRQMAALE----G-----TEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 102 ~~l~~~ia~l~----g-----~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.++++.+|+++ | .+.+++|+|+++++..++..+ +++||+|+++.|.|+.+...+. ..|.++..++
T Consensus 65 ~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~ 139 (364)
T PRK07865 65 PELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGAR-----LAGATVVRAD 139 (364)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHH-----hcCCEEEecC
Confidence 45677777765 3 246999999999999988777 7899999999999998877662 3678877764
Q ss_pred CCCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----c-------CCC
Q 013210 172 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A-------RLG 236 (447)
Q Consensus 172 ~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~-------~~g 236 (447)
++++++ ..++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|..+.++. . ...
T Consensus 140 --~~~~l~----~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 213 (364)
T PRK07865 140 --SLTELG----PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHT 213 (364)
T ss_pred --ChhhCC----cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccc
Confidence 444332 357899999999999999987 5688889999999999999996544321 1 113
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
..+++.|+||.+|.+|.|+ ||+++++++++.+...+.... ...+.+.+.++...+...+++....+.+.++++.+.+.
T Consensus 214 ~~i~~~S~SK~~~~~GlRi-G~i~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 291 (364)
T PRK07865 214 GLLAVHSLSKQSNLAGYRA-GFVAGDPALVAELLEVRKHAG-MMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPA 291 (364)
T ss_pred eEEEEeechhccCCCceee-EEEecCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999998 999999999988876554111 12223333333333433334555566778889999999
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 317 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 317 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
|++.+..+..|. .|.++++.++.. ...+.+.|..
T Consensus 292 L~~~g~~~~~~~-------------------~~~~~~~~~~~~--~~~~~~~l~~ 325 (364)
T PRK07865 292 LEAAGFRVDHSE-------------------AGLYLWATRGED--CWDTVAWLAE 325 (364)
T ss_pred HHHcCCcccCCC-------------------ccEEEEEeCCCC--HHHHHHHHHH
Confidence 988765543332 344677776421 3445555654
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-25 Score=216.63 Aligned_cols=242 Identities=20% Similarity=0.252 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhC--------CC-eEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 101 VLNLSRQMAALEG--------TE-AAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~-~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
...+++.+|++++ .+ .+++++|..+++..++..+ ..+|+.|+++.|.|+.+...++ ..|.++..+
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~-----~~g~~~~~~ 120 (363)
T PF00155_consen 46 YPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAAR-----LLGAEVIPV 120 (363)
T ss_dssp HHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHH-----HTTSEEEEE
T ss_pred hHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccccccccceecCCcccccccccc-----ccCceeeec
Confidence 5789999999998 56 6888888888888877777 6789999999999999998884 257777776
Q ss_pred C-------CCCHHHHHHhhccC-----CceEEEEEcCCCCCccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCCcc--
Q 013210 171 D-------ISDHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLSPA-- 233 (447)
Q Consensus 171 ~-------~~d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~~~-- 233 (447)
+ ..|+++|++.+++. ++++|++++|+||||.+.+.+ +|+++|++||+++|+|++|..+.+...
T Consensus 121 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~ 200 (363)
T PF00155_consen 121 PLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDF 200 (363)
T ss_dssp EEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHT
T ss_pred cccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCcc
Confidence 6 23899999988331 578999999999999998755 555559999999999999966554411
Q ss_pred -------CCC-CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC----cHHH
Q 013210 234 -------RLG-ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGL 301 (447)
Q Consensus 234 -------~~g-~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~----~l~~ 301 (447)
+.+ ..+++.|+||.+|.+|.|+ ||++.++++++.++...... ..+...+..+...+.... ++.+
T Consensus 201 ~~~~~~~~~~~~vi~~~S~SK~~g~~GlRv-G~i~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (363)
T PF00155_consen 201 GPIRSLLDEDDNVIVVGSLSKSFGLPGLRV-GYIVAPPELIERLRRFQRSG---LSSSPMQAAAAAALSDPELVEKWLEE 276 (363)
T ss_dssp HHHHGHHTTTSTEEEEEESTTTTTSGGGTE-EEEEEEHHHHHHHHHHHHHT---TSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccccccccccccceeeeecccccccccccc-ccccchhhhhhhhhhccccc---cccchhhHHHHHhhhccccccccccc
Confidence 112 3699999999999999999 99988999999888766521 223333333333333222 5566
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 302 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
+.+++.++++++.+.|++.+..+..+. .|.++++.+... +...+.+.|..
T Consensus 277 ~~~~l~~~~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~~~-~~~~l~~~L~~ 326 (363)
T PF00155_consen 277 LRERLRENRDLLREALEEIGITVLPPE-------------------AGFFLWVRLDPN-DAEELAQELLE 326 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEHHS-------------------BSSEEEEEESHH-HHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhhhheeecc-------------------CccEEEEEcccc-hHHHHHHHHHH
Confidence 778889999999999998877666432 345777777644 45677777765
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=213.37 Aligned_cols=233 Identities=13% Similarity=0.088 Sum_probs=161.4
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.++++.+|+++ | .+++++|+|+++|+..++..++ ++||.|+++.|.|+.+...+. ..|+++..++
T Consensus 63 ~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~v~~v~ 137 (374)
T PRK05839 63 ESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAI-----ASRAKVLLMP 137 (374)
T ss_pred HHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHH-----hcCCEEEEee
Confidence 35666665443 4 3569999999999999888764 478999999999999887763 3688888876
Q ss_pred CC-----CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----cc-----
Q 013210 172 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA----- 233 (447)
Q Consensus 172 ~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~----- 233 (447)
.+ +++..+..+ .++++|++++||||||.+.+ +++|+++|+++|+++|+||+|..+..+ ..
T Consensus 138 ~~~~~~~~~d~~~~~~--~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~ 215 (374)
T PRK05839 138 LTKENDFTPSLNEKEL--QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASIL 215 (374)
T ss_pred cccccCCcCCcchhhh--ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcc
Confidence 53 122222223 46899999999999999986 567788899999999999999654321 11
Q ss_pred ----CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHH
Q 013210 234 ----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 309 (447)
Q Consensus 234 ----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~ 309 (447)
..+..+++.|+||.|+.+|.|+ ||+++++++++.+....... ....+...+.++...+...+++....+++.++
T Consensus 216 ~~~~~~~~vi~~~SfSK~~~~~GlRi-G~ii~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 293 (374)
T PRK05839 216 VGNESFKNVLVINSISKRSSAPGLRS-GFIAGDASILKKYKAYRTYL-GCASPLPLQKAAAVAWLDDEHAEFFRNIYAKN 293 (374)
T ss_pred cCccccCcEEEEeccccccCCcccee-EEEecCHHHHHHHHHHHhhc-CCCCChHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 1246799999999999999999 99999999988887664411 12223333444443443434455556667777
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 370 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~ 370 (447)
++.+.+.| +.. .| ..|.++|+.+++. ..+.+++.
T Consensus 294 ~~~~~~~l---~~~--~p-------------------~gg~fi~~~~~~~---~~~~~~l~ 327 (374)
T PRK05839 294 LKLAREIL---GIT--IP-------------------PATFYVWLPVDND---EEFTKKLY 327 (374)
T ss_pred HHHHHHhc---CCC--CC-------------------CeeEEEEEeCCCh---HHHHHHHH
Confidence 77766654 211 22 2467899998743 35555653
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=211.04 Aligned_cols=236 Identities=18% Similarity=0.161 Sum_probs=166.7
Q ss_pred HHHHHHHHHHh----C---C--CeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 102 LNLSRQMAALE----G---T--EAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 102 ~~l~~~ia~l~----g---~--~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.++++.+++++ | . +++++|+|+++++..++..+ +++||.|+++.|+|+++...+. ..|.++..++
T Consensus 59 ~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~ 133 (357)
T TIGR03539 59 PELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGAL-----LAGATPVAAD 133 (357)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHH-----hcCCEEeccC
Confidence 45666666665 3 2 56999999999999988877 7899999999999998876652 2577777664
Q ss_pred CCCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----c-------CCC
Q 013210 172 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A-------RLG 236 (447)
Q Consensus 172 ~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~-------~~g 236 (447)
+++.+. .+++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|..+.++. . ...
T Consensus 134 --~~~~l~----~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 207 (357)
T TIGR03539 134 --DPTELD----PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHT 207 (357)
T ss_pred --ChhhcC----ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccc
Confidence 444332 457899999999999999986 6678899999999999999995443221 1 113
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
..+++.|+||.++.+|.|+ ||+++++++++.+...+... ....+.+.+.++..++....++....+++.++++.+.+.
T Consensus 208 ~vi~~~S~SK~~~~~G~R~-G~~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 285 (357)
T TIGR03539 208 GLLAVHSLSKRSNLAGYRA-GFVAGDPALVAELLTVRKHA-GLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPA 285 (357)
T ss_pred cEEEEeccccccCCCceeE-EEEecCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999998 99999999998887665421 122233333333333333233444556678888999999
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 317 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 317 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
|++.+..+..|. .|.++++.++. ....+.+.|..
T Consensus 286 L~~~g~~~~~p~-------------------~~~~~~~~~~~--~~~~~~~~l~~ 319 (357)
T TIGR03539 286 LEKAGFRIDHSE-------------------AGLYLWATRGE--DAWDTVDRLAE 319 (357)
T ss_pred HHHcCCCCcCCC-------------------ccEEEEEECCC--CHHHHHHHHHh
Confidence 988765443322 34477777753 23456666654
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-24 Score=210.06 Aligned_cols=291 Identities=16% Similarity=0.148 Sum_probs=194.7
Q ss_pred CchHHHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 98 NPTVLNLSRQMAALEGTE----AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
...++++++.+++++|++ .+++|+|||+|++.++.+++.+||++++..+.+.+.. +.....+ .|.+++.++.+
T Consensus 34 ~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~-~g~~~~~v~~~ 110 (363)
T TIGR02326 34 NIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEY-LGIPHHVVDTG 110 (363)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHH-cCCceEEEeCC
Confidence 346788999999999985 3889999999999999999888887666544443332 1122223 67777777654
Q ss_pred -----CHHHHHHhhcc-CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCC
Q 013210 174 -----DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSIS 245 (447)
Q Consensus 174 -----d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~s 245 (447)
|++++++++.. +++++|.+.++.||||.+.|+++|.++|+++|+++++|++| +..+++..++++|+++.|+|
T Consensus 111 ~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~ 190 (363)
T TIGR02326 111 EVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSAN 190 (363)
T ss_pred CCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCc
Confidence 78999998832 35678899999999999999999999999999999999988 44455666778999999999
Q ss_pred cccc-CCCCeeEEEEEcChHHHHHHHHHhh-----------------hhhhhcCCCccHHHHHHHHccC---CcHHHHHH
Q 013210 246 KFIS-GGADIIAGAVCGPANLVNSMMDLHQ-----------------GALMLLGPTMNPKVAFELSERI---PHLGLRMK 304 (447)
Q Consensus 246 K~~g-~~g~~igG~l~~~~~~~~~l~~~~~-----------------~~~~~~g~~~~~~~a~~~~~~~---~~l~~~~~ 304 (447)
|+++ ++| + |+++.+++.++.+..... +...+..+.....+...++..+ ..+..+.+
T Consensus 191 K~l~~p~G--~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~ 267 (363)
T TIGR02326 191 KCIQGVPG--F-GFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQ 267 (363)
T ss_pred cccccCCc--c-eEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 9884 556 4 999998887765432100 0000111111111111122211 12455778
Q ss_pred HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccc
Q 013210 305 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSL 382 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~ 382 (447)
++.++++++.+.|+++++.+..+.... .+.+++|.++.. .....+.+.|... | +.++.
T Consensus 268 ~~~~~~~~l~~~L~~~g~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~v~~~L~~~---g-i~v~~ 327 (363)
T TIGR02326 268 RYQQNQKTLVAGMRALGFEPLLDDEIQ----------------SPIITSFYSPEDPDYRFADFYQRLKEQ---G-FVIYP 327 (363)
T ss_pred HHHHHHHHHHHHHHHcCCeeccCcccC----------------CceEEEEECCCCCCCCHHHHHHHHHHC---C-EEEEC
Confidence 889999999999998877654332111 223677887642 2345677777653 3 45554
Q ss_pred cCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 383 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 383 G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
|.. ...+.+|||+. ...+.+.++.+.++|+++
T Consensus 328 g~~------------------------~~~~~iRi~~~-~~~~~edv~~~l~~l~~~ 359 (363)
T TIGR02326 328 GKV------------------------SQVDCFRIGNI-GEVDAADITRLLTAIGKA 359 (363)
T ss_pred CcC------------------------CCCCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 411 01367999963 345666677777776654
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=220.03 Aligned_cols=337 Identities=15% Similarity=0.131 Sum_probs=219.7
Q ss_pred ccccccccccccCCH-HHHHHhhcCCC--CCCCCCccccCCCCchHHH-HHHHHHHHhCCCe--EEEe---CChHHHHHH
Q 013210 59 NMSIEASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVLN-LSRQMAALEGTEA--AYCT---ASGMSAISS 129 (447)
Q Consensus 59 ~~pi~~att~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~-l~~~ia~l~g~~~--~~~t---sggt~A~~~ 129 (447)
.-++..|.+++.|.+ +.+...+...| |||++.|..|......+++ +++++++++|++. +.++ +||++||.+
T Consensus 36 ~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~ 115 (452)
T PTZ00094 36 GLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFA 115 (452)
T ss_pred CeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHH
Confidence 446788899998887 88888898888 9999999999887777774 8899999999854 4466 899999999
Q ss_pred HHHHhcCCCCeEEEeCCCchhHHHHHHhhcCc-----ccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 130 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPR-----ACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 130 al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~-----~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
++.+++++||+|+++..+|+++...+...... ..++++..++.+ |+++|+++++..++++|++. ++.+
T Consensus 116 v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s~~ 193 (452)
T PTZ00094 116 VYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--ASAY 193 (452)
T ss_pred HHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CCCC
Confidence 99999999999999999998876544211000 012334444433 89999999844467777763 4569
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCC----ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF--SPLVLS----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH 273 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~--~~~~~~----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~ 273 (447)
|.++|+++|.++|+++|+++++|++| +.+..+ +. .++|++++|+||+++||. ||+++.++++.+.+....
T Consensus 194 g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~-~~~D~l~~S~hK~l~GP~---Gg~l~~~~~~~~~l~~~~ 269 (452)
T PTZ00094 194 PRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF-PYADVVTTTTHKSLRGPR---SGLIFYRKKVKPDIENKI 269 (452)
T ss_pred CCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC-CCCcEEEcCCccCCCCCC---ceEEEEecccchHHHHhh
Confidence 99999999999999999999999999 333332 22 279999999999886553 466666655544332211
Q ss_pred hhhh--hhcCC-CccHHHHHH-HHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCC
Q 013210 274 QGAL--MLLGP-TMNPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 274 ~~~~--~~~g~-~~~~~~a~~-~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
.... ...|+ .....++.. ++..+ .......++..+++++|.+.|++.+.++..++... +
T Consensus 270 ~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~-~-------------- 334 (452)
T PTZ00094 270 NEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGTDN-H-------------- 334 (452)
T ss_pred ccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCCC-c--------------
Confidence 1000 01122 222222221 22222 22345667788999999999988777776543111 1
Q ss_pred cCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH--
Q 013210 348 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL-- 425 (447)
Q Consensus 348 ~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~-- 425 (447)
-.++.|...+.. ...+...|.. .| |.++.-+. | |.. ....++.||+|++ ..++
T Consensus 335 -~~~v~~~~~~~~-~~~~~~~L~~---~g-I~vs~~~~------p-~~~-----------~~~~~~~vRis~~-~~tt~g 389 (452)
T PTZ00094 335 -LVLVDLRPFGIT-GSKMEKLLDA---VN-ISVNKNTI------P-GDK-----------SALNPSGVRLGTP-ALTTRG 389 (452)
T ss_pred -eEeecCCcCCCC-HHHHHHHHHH---CC-cEEecccC------C-CCC-----------cCCCCCeEEECCH-HHHhCC
Confidence 114444443322 3455555554 23 45442110 1 100 0122478999998 6665
Q ss_pred --HHHHHHHHHHHHHhhh
Q 013210 426 --DQRWSQFEKALSRMQD 441 (447)
Q Consensus 426 --~~~i~~l~~al~~~~~ 441 (447)
+++++.+.++|.++..
T Consensus 390 ~~~~di~~l~~~l~~~~~ 407 (452)
T PTZ00094 390 AKEKDFKFVADFLDRAVK 407 (452)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 7888888888876644
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=217.86 Aligned_cols=318 Identities=13% Similarity=0.084 Sum_probs=201.1
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCC-CCccccCCCC-chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCC
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDR-DFFIYSRHFN-PTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSG 138 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~-~~~~~~r~~~-~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~g 138 (447)
+++++..+.+ +.+.+++. .++++. ..+..++... ...+.+ +++ +++|++ .++||+|+|++++.++.++++++
T Consensus 34 ~a~g~~p~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~ 110 (406)
T TIGR01814 34 NSLGLMPKAARNALKEELD-KWAKIAIRGHNTGKAPWFTLDESL-LKL-RLVGAKEDEVVVMNTLTINLHLLLASFYKPT 110 (406)
T ss_pred CCcCcCcHHHHHHHHHHHH-HHHHhhhccCccCCCChhhhhhhh-ccc-cccCCCCCcEEEeCCchHHHHHHHHHhcCCc
Confidence 4455552334 44444443 344333 2444433222 222333 345 788874 59999999999999999886654
Q ss_pred ---CeEEEeCCCchhHHHHHHhhcCcccCeeE----EEeCCC-----CHHHHHHhhc--cCCceEEEEEcCCCCCccccC
Q 013210 139 ---GHVVAARTLYGGTHALLTHFFPRACNITT----TFVDIS-----DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN 204 (447)
Q Consensus 139 ---d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~----~~v~~~-----d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~ 204 (447)
+.|+++..+|++....+.....+ .|+++ ..++.+ |++++++.++ +++|++|++++++|++|.++|
T Consensus 111 ~~~~~i~~~~~~~~s~~~~~~~~~~~-~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~ 189 (406)
T TIGR01814 111 PKRYKILLEAKAFPSDHYAIESQLQL-HGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFD 189 (406)
T ss_pred CCccEEEecCCCCChHHHHHHHHHHh-cCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecC
Confidence 36888889999977666433333 57665 344432 7788887763 368999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCcccc-CCCCeeEEEEEcChHHHHHHHHHhhhh-----
Q 013210 205 IPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA----- 276 (447)
Q Consensus 205 l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~----- 276 (447)
+++|.++|+++|+++++|++| +.++++..++++|+++.|+||+++ ++| ||+++.++.. ..+.....++
T Consensus 190 ~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG---~~l~v~~~~~-~~~~p~~~g~~~~~~ 265 (406)
T TIGR01814 190 MAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG---AGAFVHEKHA-HTERPRLAGWWGHAR 265 (406)
T ss_pred HHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC---eEEEEehhhh-hhcCCCCCcccCCCC
Confidence 999999999999999999999 556677777899999999999985 554 2544444332 2221110000
Q ss_pred ---------------hhhcCCCccHHH--H-HHHHccC--CcHHHHHHHHHHHHHHHHHHHHhC-C----CeeeCCCCCC
Q 013210 277 ---------------LMLLGPTMNPKV--A-FELSERI--PHLGLRMKEHCHRALIFARRMKKL-G----LKVLYPGLED 331 (447)
Q Consensus 277 ---------------~~~~g~~~~~~~--a-~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~-~----~~v~~p~~~~ 331 (447)
....| +++... + ..++..+ ..+....++..++.+++.+.|++. + .++..|.-
T Consensus 266 ~~~~~~~~~~~~~~~~~~~G-T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~-- 342 (406)
T TIGR01814 266 PTRFKMDNTLGLIPCGFRIS-NPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRD-- 342 (406)
T ss_pred ccccccccccCCCccceeeC-CccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCC--
Confidence 00112 222211 1 1122211 123455566788888888888764 2 45554421
Q ss_pred CchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC
Q 013210 332 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 411 (447)
Q Consensus 332 ~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~ 411 (447)
+. ..+++++|.++ . ....+.+.|... | +.++.. .
T Consensus 343 -~~------------~r~~~v~~~~~-~-~~~~~~~~L~~~---g-i~v~~~---------------------------~ 376 (406)
T TIGR01814 343 -HA------------QRGCQLSLTHP-V-PGKAVFQALIKR---G-VIGDKR---------------------------E 376 (406)
T ss_pred -hh------------hcCCeEEEEec-C-CHHHHHHHHHHC---C-EEEecc---------------------------C
Confidence 10 13568899887 2 245666677642 3 232110 1
Q ss_pred CCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013210 412 AGLVRMSV-GYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 412 ~~~iRiS~-g~~~~~~~~i~~l~~al~~~ 439 (447)
++.||+|+ + ..+++++|+.+.++|+++
T Consensus 377 ~~~iRiS~~~-~~nt~~did~l~~~l~~~ 404 (406)
T TIGR01814 377 PSVIRVAPVP-LYNTFVDVYDAVNVLEEI 404 (406)
T ss_pred CCeEEEechh-ccCCHHHHHHHHHHHHHH
Confidence 35899999 7 689999999999998765
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-24 Score=209.44 Aligned_cols=307 Identities=13% Similarity=0.095 Sum_probs=194.9
Q ss_pred ccccCCH-HHHHHhhcCCCCCCCC-CccccCC----CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCe
Q 013210 67 TFTVMEP-ETMRRMFAGELGPDRD-FFIYSRH----FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGH 140 (447)
Q Consensus 67 t~~~~~~-~~~~~~~~~~~~~~~~-~~~~~r~----~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~ 140 (447)
+++.+.+ +.+.++.... |++ .|..|.. ..+..+++|+++|+++|++.++++++|+.|+..++..+.++||.
T Consensus 21 ~~~~~~~~~~~~~~~~~~---p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~~a~~~~~~~~~~~~d~ 97 (370)
T PRK05937 21 DTLVHEVEKRYRLYCRQF---PHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHLSSVTDY 97 (370)
T ss_pred HHHHHHHHHHHHHhcccc---CCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChHHHHHHHHHHhCCCCCE
Confidence 3333333 4554443332 554 6666666 77889999999999999998888999999987766666677888
Q ss_pred EEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhcc-----CCceEEEEEcCCCCCccccCHHHHHHHHHhc
Q 013210 141 VVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVANIPELSRLAHDK 215 (447)
Q Consensus 141 Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~l~~I~~la~~~ 215 (447)
|++...+|.++...+.. . .+..+. ++..|+++|++.++. +++.+|++++++|++|.++|+++|.++|+++
T Consensus 98 ii~d~~~H~sv~~~~~~-~---~~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~ 172 (370)
T PRK05937 98 VLWDEQVHISVVYSLSV-I---SGWHQS-FRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKY 172 (370)
T ss_pred EEEEhhhhHHHHHHHHH-c---CCceEE-ecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHc
Confidence 88889999888887742 2 243444 356789999998832 3467888999999999999999999999999
Q ss_pred CCEEEEeCCCC--CCCCCcc----CCC---CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccH
Q 013210 216 GVTVVVDNTFS--PLVLSPA----RLG---ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP 286 (447)
Q Consensus 216 gi~livD~~~~--~~~~~~~----~~g---~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~ 286 (447)
|+++|+|++|+ .+..+.. .++ .++++.|+||.+|++|. |++ ..++....+...........+.++..
T Consensus 173 ~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~---~vl-~~~~~~~~~~~~~~~~~~s~~~~~~~ 248 (370)
T PRK05937 173 HAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGA---ALL-SSSEVKQDLMLNSPPLRYSTGLPPHL 248 (370)
T ss_pred CCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCce---EEE-cCHHHHHHHHHhCCCCeecCCCCHHH
Confidence 99999999994 2433321 222 34678899999998762 444 44555554442221111122222222
Q ss_pred HHHH-HHHccCCc-HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013210 287 KVAF-ELSERIPH-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 364 (447)
Q Consensus 287 ~~a~-~~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~ 364 (447)
..+. .++..+.. -....++..++++++.+.|...+ + +.+..|.+++.. ...
T Consensus 249 ~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~~-----~---------------------~~~~~i~~~~~~-~~~ 301 (370)
T PRK05937 249 LISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSAA-----P---------------------GCVQPIFLPGIS-EQE 301 (370)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCC-----C---------------------CCEEEEEeCChh-HHH
Confidence 2211 11211111 12233455666666665553210 1 113445666443 456
Q ss_pred HHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 365 l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
+.+.|... | +.++.. +.| ..+.||+|++ ..+++++++.+.++|+++.+
T Consensus 302 ~~~~L~~~---g-i~v~~~------~~~------------------~~~~iRis~~-~~~t~edid~l~~~L~~~~~ 349 (370)
T PRK05937 302 LYSKLVET---G-IRVGVV------CFP------------------TGPFLRVNLH-AFNTEDEVDILVSVLATYLE 349 (370)
T ss_pred HHHHHHHC---C-eeEEee------CCC------------------CCCEEEEEcC-CCCCHHHHHHHHHHHHHHHH
Confidence 77777652 3 333311 111 1357999999 99999999999999987653
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=209.35 Aligned_cols=288 Identities=14% Similarity=0.152 Sum_probs=198.9
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHH
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM 177 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 177 (447)
.+..+++++.+++++|.+..+++++|++++..++++++++||+|+++++.|+++...+. ..|.++..++..|+++
T Consensus 86 ~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~ 160 (397)
T PRK06939 86 QDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVR-----LCKAKRYRYANNDMAD 160 (397)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHH-----hcCCceEEeCCCCHHH
Confidence 45678899999999998776666667999999999999999999999999999877662 2466666777678999
Q ss_pred HHHhhcc---C--CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CC-CCC------ccCC--CCeEEEe
Q 013210 178 VNSAIVQ---G--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PL-VLS------PARL--GADVVVH 242 (447)
Q Consensus 178 l~~~i~~---~--~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~-~~~------~~~~--g~di~~~ 242 (447)
+++.++. + ++++|++++++|++|.+.++++|.++|++||+++|+|++|. ++ ... ...+ ++|+++.
T Consensus 161 l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~ 240 (397)
T PRK06939 161 LEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITG 240 (397)
T ss_pred HHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEE
Confidence 9888732 3 78899988899999999999999999999999999999993 32 111 0112 5789999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHH--H-HHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK--V-AFELSERIPHLGLRMKEHCHRALIFARRMKK 319 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~--~-a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 319 (447)
|+||++++ .++ ||+++++++++.+....... ..+++..+. . +..++..+.......+++.++++++.+.|++
T Consensus 241 S~sK~~~g--~r~-G~v~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~ 315 (397)
T PRK06939 241 TLGKALGG--ASG-GYTAGRKEVIDWLRQRSRPY--LFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTA 315 (397)
T ss_pred ECHHHhCc--cCc-eEEEeCHHHHHHHHHhCccc--cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999963 364 99999999988887543211 122222222 2 1122222222245567788999999999988
Q ss_pred CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCC
Q 013210 320 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399 (447)
Q Consensus 320 ~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~ 399 (447)
.+..+..| .++++.+.++.......|.+.|... | +.+..+.+ +..
T Consensus 316 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~L~~~---g-I~v~~~~~------~~~----- 360 (397)
T PRK06939 316 AGFTLGPG--------------------EHPIIPVMLGDAKLAQEFADRLLEE---G-VYVIGFSF------PVV----- 360 (397)
T ss_pred cCCCcCCC--------------------CCCEEEEEECCHHHHHHHHHHHHHC---C-ceEeeeCC------CCC-----
Confidence 76543211 2346666666544467788887753 3 34432110 100
Q ss_pred CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 400 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+-..+.||++++ ...+++.++.+.+.|+++.
T Consensus 361 ---------~~~~~~iRi~~~-~~~~~~~i~~~l~~L~~~~ 391 (397)
T PRK06939 361 ---------PKGQARIRTQMS-AAHTKEQLDRAIDAFEKVG 391 (397)
T ss_pred ---------CCCCceEEEEEC-CCCCHHHHHHHHHHHHHHH
Confidence 112367999998 6566676777777666553
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=208.15 Aligned_cols=292 Identities=13% Similarity=0.147 Sum_probs=199.2
Q ss_pred chHHHHHHHHHHHhCCCe----EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 99 PTVLNLSRQMAALEGTEA----AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~----~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
...+++++.+++++|+++ +++|+||+++++.++.++..+||+|++..+.|.+.. +.....+ .|+++..++.+
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~-~g~~~~~i~~~~ 113 (368)
T PRK13479 37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEY-LGIAHVVLDTGE 113 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHH-cCCcEEEEECCC
Confidence 367899999999999742 779999999999999999989999998877766553 1122223 67787777653
Q ss_pred ----CHHHHHHhhcc-CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCc
Q 013210 174 ----DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISK 246 (447)
Q Consensus 174 ----d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK 246 (447)
|++++++++.. +++++|++++++||||.+.|+++|.++|+++|+++|+|+++ +....+...+++|+++.|++|
T Consensus 114 ~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K 193 (368)
T PRK13479 114 DEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANK 193 (368)
T ss_pred CCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCcc
Confidence 78999998832 35678999999999999999999999999999999999877 333455556689999999999
Q ss_pred cc-cCCCCeeEEEEEcChHHHHHHHHHhhh---------------hhhhcCCCccH-HHHHHHHc---cCCcHHHHHHHH
Q 013210 247 FI-SGGADIIAGAVCGPANLVNSMMDLHQG---------------ALMLLGPTMNP-KVAFELSE---RIPHLGLRMKEH 306 (447)
Q Consensus 247 ~~-g~~g~~igG~l~~~~~~~~~l~~~~~~---------------~~~~~g~~~~~-~~a~~~~~---~~~~l~~~~~~~ 306 (447)
++ |++| + |+++.++++++.+...... .....+.+... .....++. ....+..+.+++
T Consensus 194 ~l~g~~G--~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~ 270 (368)
T PRK13479 194 CIEGVPG--F-GFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARY 270 (368)
T ss_pred ccccCCC--c-eEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 76 5666 4 9999999888776532110 00001111111 11111221 112355667888
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccC
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
.++++++.+.|+++++++..+.... .+.+++|.++.. .+...+.+.|...+ +.++.|.
T Consensus 271 ~~~~~~l~~~L~~~g~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~L~~~g----i~v~~g~ 330 (368)
T PRK13479 271 ANNQRTLVAGMRALGFEPLLDAEIQ----------------SPIIVTFHAPADPAYDFKEFYERLKEQG----FVIYPGK 330 (368)
T ss_pred HHHHHHHHHHHHHcCCcccCCchhc----------------CceEEEEECCCCCCcCHHHHHHHHHHCC----EEEecCC
Confidence 9999999999999877554332111 123677776532 23467777777533 4444331
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
. ...+.+|+|.. ..++.+.++.+.++|+++.+
T Consensus 331 ~------------------------~~~~~iRis~~-~~~t~edi~~~l~~L~~~l~ 362 (368)
T PRK13479 331 L------------------------TQVDTFRIGCI-GDVDAADIRRLVAAIAEALY 362 (368)
T ss_pred C------------------------CCCCEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 0 01357999963 34667777777777776543
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=212.99 Aligned_cols=295 Identities=14% Similarity=0.118 Sum_probs=202.8
Q ss_pred CCchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 97 FNPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
....++++++.+++++|++ .++++++|+++++.++..++++||+|+++++.|.+... .....+ .|.+++.++.+
T Consensus 40 ~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~--~~~~~~-~g~~v~~v~~~ 116 (401)
T PLN02409 40 FPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLW--IDQMQR-LNFDVDVVESP 116 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHH--HHHHHH-cCCceEEEECC
Confidence 3456788999999999874 37999999999999999899999999999998876542 123333 68888877653
Q ss_pred -----CHHHHHHhhcc---CCceEEEEEcCCCCCccccCHHHHHHH--HHhcCCEEEEeCCC--CCCCCCccCCCCeEEE
Q 013210 174 -----DHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRL--AHDKGVTVVVDNTF--SPLVLSPARLGADVVV 241 (447)
Q Consensus 174 -----d~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~l~~I~~l--a~~~gi~livD~~~--~~~~~~~~~~g~di~~ 241 (447)
|+++|++++.. +++++|++.++.|+||.+.|+++|.++ |+++|+++++|+++ +...++..++++|+++
T Consensus 117 ~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~ 196 (401)
T PLN02409 117 WGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVAL 196 (401)
T ss_pred CCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEE
Confidence 78999999933 379999999999999999999999999 99999999999998 4455666778999999
Q ss_pred eCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh--------------hhhhcCCCccH--H-HHHHHHccC--CcHHHH
Q 013210 242 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQG--------------ALMLLGPTMNP--K-VAFELSERI--PHLGLR 302 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~--------------~~~~~g~~~~~--~-~a~~~~~~~--~~l~~~ 302 (447)
.|.||++++|.. + |+++.+++.++++...... .......+++. . +...++..+ ..+...
T Consensus 197 ~s~~K~l~~P~G-~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i 274 (401)
T PLN02409 197 TGSQKALSLPTG-L-GIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENV 274 (401)
T ss_pred EcCccccCcCCC-c-ceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999976442 5 9999998888776532110 00000112221 1 111122211 124456
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc
Q 013210 303 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL 382 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~ 382 (447)
.+++.++++++.+.|++.+.++..|. +.. ..+.+++|.++...+...+...|.. .+| +.+..
T Consensus 275 ~~~~~~l~~~l~~~L~~~g~~~~~~~-~~~--------------~s~~v~~~~~p~~~~~~~l~~~l~~--~~~-i~i~~ 336 (401)
T PLN02409 275 IARHARLGEATRLAVEAWGLKLCTKK-PEW--------------RSDTVTAVVVPEGIDSAEIVKNAWK--KYN-LSLGL 336 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeccCC-hhh--------------cccceEEEeCCCCCCHHHHHHHHHH--hCC-EEEEc
Confidence 67788999999999988877665432 010 1234778887633234556655543 234 34444
Q ss_pred cCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 383 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 383 G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
|.. ......+|||.- -+++.+.+..+..+|+.
T Consensus 337 G~~-----------------------~~~~~~~Rig~~-g~~~~~~~~~~~~~~~~ 368 (401)
T PLN02409 337 GLN-----------------------KVAGKVFRIGHL-GNVNELQLLGALAGVEM 368 (401)
T ss_pred CCC-----------------------cccCCEEEEcCC-CCCCHHHHHHHHHHHHH
Confidence 411 012468999987 66666666666666654
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=207.55 Aligned_cols=311 Identities=12% Similarity=0.135 Sum_probs=208.1
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc-----
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC----- 135 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~----- 135 (447)
...+.+.+.+ +.+..+++...++++ .|. ......+++++.+|+++|++ .+++++||++++..++.++.
T Consensus 27 ~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 102 (373)
T TIGR03812 27 SMCTNPHPIAVKAYDMFIETNLGDPG---LFP-GTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLARE 102 (373)
T ss_pred EEeCCchHHHHHHHHHHhhcCCCCcc---cCc-cHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhc
Confidence 3334444553 566666555555543 122 22355588999999999985 47889999999988876653
Q ss_pred -CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHH
Q 013210 136 -SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 209 (447)
Q Consensus 136 -~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~ 209 (447)
.+||+|+++.++|.++...+. ..|+++..++.+ |++++++++ ++++..+++..++||+|.+.|+++|.
T Consensus 103 ~~~g~~vl~~~~~h~~~~~~~~-----~~G~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~vv~~~~~~~tG~~~~~~~i~ 176 (373)
T TIGR03812 103 EKRTPNIIVPESAHFSFEKAAE-----MLGLELRYAPLDEDYTVDVKDVEDLI-DDNTIGIVGIAGTTELGQIDDIEELS 176 (373)
T ss_pred cCCCcEEEECCcchHHHHHHHH-----HcCCeEEEEeeCCCCCcCHHHHHHHH-hhCcEEEEEECCCCCCCccCCHHHHH
Confidence 357899999999998776652 268888877653 899999998 66665445445799999999999999
Q ss_pred HHHHhcCCEEEEeCCCCCCC------------CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh
Q 013210 210 RLAHDKGVTVVVDNTFSPLV------------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL 277 (447)
Q Consensus 210 ~la~~~gi~livD~~~~~~~------------~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~ 277 (447)
++|+++|+++|+|++|+.+. .+....++|.++.|.||+.. .+.+.||+++.++++++.+..... +.
T Consensus 177 ~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~-~~~~~G~~~~~~~~~~~~l~~~~~-~~ 254 (373)
T TIGR03812 177 KIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGL-SPIPAGGILFRSKSYLKYLSVDAP-YL 254 (373)
T ss_pred HHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCC-CcCCceEEEEeCHHHHhhhcccCc-cc
Confidence 99999999999999995331 11112378999999999644 333465677778888776642111 10
Q ss_pred hh------cCCC--ccHHHHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCC
Q 013210 278 ML------LGPT--MNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 278 ~~------~g~~--~~~~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
.. .|+. .....+...+..+ +.+....++..++++++.+.|++++.....+.
T Consensus 255 ~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------- 315 (373)
T TIGR03812 255 TVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEP------------------- 315 (373)
T ss_pred CCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCC-------------------
Confidence 00 0111 1122222333322 23455678889999999999998876433321
Q ss_pred cCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013210 348 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 427 (447)
Q Consensus 348 ~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 427 (447)
...++.|.+++. ..+.+.|... | +.++.+ ..+..||+|++ ..++++
T Consensus 316 ~~~~v~~~~~~~---~~v~~~L~~~---g-i~v~~~--------------------------~~~~~iRis~~-~~~t~e 361 (373)
T TIGR03812 316 VLNIVAFEVDDP---EEVRKKLRDR---G-WYVSVT--------------------------RCPKALRIVVM-PHVTRE 361 (373)
T ss_pred CceEEEEEeCCH---HHHHHHHHHC---C-ceeccC--------------------------CCCCEEEEEEE-CCCCHH
Confidence 123778887753 3566666652 3 333321 01467999999 889999
Q ss_pred HHHHHHHHHHHh
Q 013210 428 RWSQFEKALSRM 439 (447)
Q Consensus 428 ~i~~l~~al~~~ 439 (447)
+++.+.++|+++
T Consensus 362 did~l~~~L~~~ 373 (373)
T TIGR03812 362 HIEEFLEDLKEI 373 (373)
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=206.52 Aligned_cols=286 Identities=16% Similarity=0.164 Sum_probs=207.5
Q ss_pred chHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc--------------CCCCeEEEeCCCchhHHHHHHhhcCcccC
Q 013210 99 PTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC--------------SSGGHVVAARTLYGGTHALLTHFFPRACN 164 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~--------------~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g 164 (447)
...++||++||+++|.+.+++++||..||..++.++. .+++.|+.....|.+....++ +..+..+
T Consensus 147 ~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~-ls~~~~~ 225 (476)
T PLN02955 147 TYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR-LAERQGN 225 (476)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH-hccccCC
Confidence 4567899999999999999999999999999998872 345678888888888887773 2222125
Q ss_pred eeEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc----------
Q 013210 165 ITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP---------- 232 (447)
Q Consensus 165 ~~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~---------- 232 (447)
.++..++.+|+++|++.++. .+.++|+++.+.++.|.+.|+++|.++|++||+++|+||+|+.+.+.+
T Consensus 226 a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g 305 (476)
T PLN02955 226 VEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFN 305 (476)
T ss_pred ceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhC
Confidence 77888889999999988842 346788999999999999999999999999999999999995433221
Q ss_pred cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHH---HccCCcHHHHHHHHHHH
Q 013210 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL---SERIPHLGLRMKEHCHR 309 (447)
Q Consensus 233 ~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~---~~~~~~l~~~~~~~~~~ 309 (447)
..-.+|+++.|++|.+|..| |++++++++++.++...... .+++.+++..+... +..+.....+.++++++
T Consensus 306 ~~~di~ii~~TLsKA~G~~G----Gfi~gs~~~~~~l~~~~~~~--ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n 379 (476)
T PLN02955 306 CEADVDLCVGTLSKAAGCHG----GFIACSKKWKQLIQSRGRSF--IFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWER 379 (476)
T ss_pred CCCCCcEEEEeCccchhccC----ceeecHHHHHHHHHHhCCCC--eecccccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 11257899999999999654 99999999988887655533 23333333222222 22222223456677777
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
.+++.+. .++.+ . .+++.+.+.+...+..+.+.|... | +.++ .+
T Consensus 380 ~~~fr~~---~G~~~------~-----------------sPI~pI~ig~~~~a~~~~~~L~~~---G-i~v~------~i 423 (476)
T PLN02955 380 VKEFKAL---SGVDI------S-----------------SPIISLVVGNQEKALKASRYLLKS---G-FHVM------AI 423 (476)
T ss_pred HHHHHHh---cCCCC------C-----------------CCEEEEEeCCHHHHHHHHHHHHHC---C-CEEE------EE
Confidence 7777663 23321 1 239999999888788888888863 3 2322 23
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
.+|++.. ....+||++. ..+++++|+.+.++|.++.+.
T Consensus 424 ~yPtVP~--------------g~~rLRi~ls-A~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 424 RPPTVPP--------------NSCRLRVTLS-AAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred CCCCCCC--------------CCceEEEeeC-CCCCHHHHHHHHHHHHHHHhh
Confidence 3455431 2357999999 999999999999999887544
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-24 Score=207.41 Aligned_cols=286 Identities=19% Similarity=0.108 Sum_probs=192.9
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
..+..+++++.+++++|.+.+++++||++|+.+++.+++++||.|+++.+.|.+..... ... +..|.++..++.+
T Consensus 30 ~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~-~~~-~~~g~~~~~v~~~~~~ 107 (338)
T cd06502 30 EDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAG-APE-FLSGVKLLPVPGENGK 107 (338)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCC-cHH-HHcCceEEeecCCCCc
Confidence 35678899999999999778999999999999999999999999999999987654321 001 1257788777753
Q ss_pred -CHHHHHHhhcc------CCceEEEEEcCCCCCcc--ccCHHHHHHHHHhcCCEEEEeCCCCCC-----CCC--ccCCCC
Q 013210 174 -DHEMVNSAIVQ------GRTKVLYFESISNPTLA--VANIPELSRLAHDKGVTVVVDNTFSPL-----VLS--PARLGA 237 (447)
Q Consensus 174 -d~~~l~~~i~~------~~t~lV~i~~~~NptG~--v~~l~~I~~la~~~gi~livD~~~~~~-----~~~--~~~~g~ 237 (447)
|+++|++++.+ +++++|++++|+||+|. ..++++|+++|+++|+++|+|++|... ... ....++
T Consensus 108 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~ 187 (338)
T cd06502 108 LTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGV 187 (338)
T ss_pred CCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcC
Confidence 88999998832 27899999999998443 235788999999999999999986211 111 112368
Q ss_pred eEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC--CcHHHHHHHHHHHHHHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~ 315 (447)
|+++.|+||+++++| |++++.++++++.++...... ..+...+...+..+...+ .....+.+++.++++++.+
T Consensus 188 d~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~ 262 (338)
T cd06502 188 DSVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQA--GGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAE 262 (338)
T ss_pred CEEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHh--CCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 899999999999876 356678889988887655311 011112222222222222 2244566778888899999
Q ss_pred HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCcccccccccc
Q 013210 316 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 394 (447)
Q Consensus 316 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~ 394 (447)
.|++++..+. +. .++++.+.++ +......+.+.+......|++. + +.
T Consensus 263 ~L~~~~~~~~-~~-------------------~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~---~--------~~- 310 (338)
T cd06502 263 ALEELGGLES-EV-------------------QTNIVLLDPVEANAVFVELSKEAIERRGEGVLF---Y--------AW- 310 (338)
T ss_pred HHHhcCCCcc-cc-------------------cCCeEEEecCCccHHHHHHHHHHHHhhhCCEEE---E--------ec-
Confidence 9998776322 21 3447777775 3233344444442100012111 1 00
Q ss_pred ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 395 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 395 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
..+.|||+++ ..+++++++.+.+++++
T Consensus 311 ----------------~~~~lRi~~~-~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 311 ----------------GEGGVRFVTH-WDTTEEDVDELLSALKA 337 (338)
T ss_pred ----------------CCCeEEEEee-cCCCHHHHHHHHHHHhc
Confidence 1267999999 88888888888888764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=213.93 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=162.7
Q ss_pred CccccCCCCchHHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcC-CCCeEEEeCCCchhHHHHHHhhcC
Q 013210 90 FFIYSRHFNPTVLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFP 160 (447)
Q Consensus 90 ~~~~~r~~~~~~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~-~gd~Vi~~~~~y~~~~~~~~~~~~ 160 (447)
.+.|+.. .-...+|+.||+++ | .+++++|+|+++|+.++++.++. +||.|+++.|.|+.+...+.
T Consensus 161 ~~~Y~~s--~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~---- 234 (534)
T PLN02231 161 TGAYSHS--QGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIA---- 234 (534)
T ss_pred ccCcCCC--CCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHH----
Confidence 3445532 22457888888876 3 35699999999999999999874 79999999999999987773
Q ss_pred cccCeeEEEeCCC-------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCC
Q 013210 161 RACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 161 ~~~g~~~~~v~~~-------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~ 225 (447)
..|.+++.++.+ |+++|+++++. .++++|++.+|+||||.+.+ +++|+++|++||+++|+||+|
T Consensus 235 -~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY 313 (534)
T PLN02231 235 -LHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVY 313 (534)
T ss_pred -HcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 246666655432 78999988832 16899999999999999986 678899999999999999999
Q ss_pred CCCCCCc-------cCC---------C-CeEEEeCCCccc-cCCCCeeEEEEEc---ChHHHHHHHHHhhhhhhhcCCCc
Q 013210 226 SPLVLSP-------ARL---------G-ADVVVHSISKFI-SGGADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTM 284 (447)
Q Consensus 226 ~~~~~~~-------~~~---------g-~di~~~S~sK~~-g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~g~~~ 284 (447)
..+.++. ..+ + ..++++|+||.+ |.+|.|+ ||++. ++++++.+..... . ....+..
T Consensus 314 ~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRi-Gy~~~~~~~~~l~~~l~k~~~-~-~~~s~~~ 390 (534)
T PLN02231 314 QENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFTSDVREQIYKVAS-V-NLCSNIS 390 (534)
T ss_pred hhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccce-EEEEEecCCHHHHHHHHHHHh-h-hcCCChH
Confidence 7665521 000 1 357889999965 7899998 99865 6788888876644 1 1223333
Q ss_pred cHHHHHHHHccC----CcHH-------HHHHHHHHHHHHHHHHHHhC-CCeeeCC
Q 013210 285 NPKVAFELSERI----PHLG-------LRMKEHCHRALIFARRMKKL-GLKVLYP 327 (447)
Q Consensus 285 ~~~~a~~~~~~~----~~l~-------~~~~~~~~~~~~l~~~L~~~-~~~v~~p 327 (447)
.+..+..++..- ..+. ...+.+.++++.+.+.|+++ +..+..|
T Consensus 391 ~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p 445 (534)
T PLN02231 391 GQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKA 445 (534)
T ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC
Confidence 444444444321 1221 22456889999999999887 3455433
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=210.05 Aligned_cols=244 Identities=15% Similarity=0.164 Sum_probs=165.1
Q ss_pred chHHHHHHHHHHHh---C--CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCe--------
Q 013210 99 PTVLNLSRQMAALE---G--TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI-------- 165 (447)
Q Consensus 99 ~~~~~l~~~ia~l~---g--~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~-------- 165 (447)
+....+++.+|+++ + .+++++|+|+++++..+ ..++.+||+|+++.|+|+.+...+. ..|.
T Consensus 75 ~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l-~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~~~~~ 148 (402)
T TIGR03542 75 QGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRL-QSLFGSDNTVAVQDPVYPAYVDSNV-----MAGRAGVLDDDG 148 (402)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHHH-----HcCCcccccccc
Confidence 34467899999865 3 35699999999999985 4567889999999999999987763 2455
Q ss_pred ---eEEEeCCCCHHHHHHhh-ccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---c--
Q 013210 166 ---TTTFVDISDHEMVNSAI-VQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---A-- 233 (447)
Q Consensus 166 ---~~~~v~~~d~~~l~~~i-~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---~-- 233 (447)
++..++.+..+.+...+ ...++++|++++||||||.+.+ +++|+++|++||+++|+||+|..+..+. .
T Consensus 149 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~ 228 (402)
T TIGR03542 149 RYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSI 228 (402)
T ss_pred ccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcch
Confidence 77776653211121111 1257899999999999999997 7788999999999999999996554321 1
Q ss_pred -CC----CCeEEEeCCCccccCCCCeeEEEEEcChHHH--------HHHHHHhhhhhhhcC-CCccHHHHHHHHccC--C
Q 013210 234 -RL----GADVVVHSISKFISGGADIIAGAVCGPANLV--------NSMMDLHQGALMLLG-PTMNPKVAFELSERI--P 297 (447)
Q Consensus 234 -~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~--------~~l~~~~~~~~~~~g-~~~~~~~a~~~~~~~--~ 297 (447)
.+ +..+++.|+||.+|.+|.|+ ||++++++++ ..+..... . ...+ +.+.+.++..++... .
T Consensus 229 ~~~~~~~~~vi~~~SfSK~~g~pGlRi-G~~i~~~~l~~~~~~~~~~~~~~~~~-~-~~~~~s~~~q~~~~~~l~~~~~~ 305 (402)
T TIGR03542 229 FEIPGAKECAIEFRSFSKTAGFTGVRL-GWTVVPKELTYADGHSVIQDWERRQC-T-KFNGASYPVQRAAEAAYAGEGLQ 305 (402)
T ss_pred hhCCCCcccEEEEecCccccCCCCcce-EEEEecHHHhhcchhhHHHHHHHHhh-h-cccCCCHHHHHHHHHHHcCcchh
Confidence 11 34688999999999999999 9999998876 22211111 0 0112 223343433444322 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 370 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~ 370 (447)
.+....+.+.++++.+.+.|++.+.++..|. .|.++|+.++...+...+...+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~-------------------~~~f~~v~l~~~~~~~~l~~~l~ 359 (402)
T TIGR03542 306 PILEAISYYMENARILRKALEAAGFKVYGGE-------------------HAPYLWVKTPEGISSWDFFDFLL 359 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceecCCC-------------------ceeEEEEECCCCCCHHHHHHHHH
Confidence 3444556678888999999988764443221 35589999975322445665554
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=210.74 Aligned_cols=292 Identities=16% Similarity=0.189 Sum_probs=200.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHH
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE 176 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 176 (447)
..+...+||++||++++.++.+++++|..++..++++++++||.|++....|.++...+ +..+.++.+++.+|.+
T Consensus 152 ~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~-----~ls~~~~~~~~~nd~~ 226 (481)
T PLN02822 152 TIDVHLDCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQNGL-----YLSRSTIVYFKHNDME 226 (481)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHHHHHHH-----HHcCCeEEEECCCCHH
Confidence 35667899999999999866555555656889999999999999998887776665544 1246788888888888
Q ss_pred HHHHhhcc--------CCc-eEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc--------cC---CC
Q 013210 177 MVNSAIVQ--------GRT-KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP--------AR---LG 236 (447)
Q Consensus 177 ~l~~~i~~--------~~t-~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~--------~~---~g 236 (447)
+++..++. +++ ++|++++++|++|.+.|+++|.++|++||+++|+||+|+...+.. .. ..
T Consensus 227 ~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~ 306 (481)
T PLN02822 227 SLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEK 306 (481)
T ss_pred HHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCC
Confidence 77765521 234 799999999999999999999999999999999999995222210 11 14
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCcc--HHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN--PKVAFELSERIPHLGLRMKEHCHRALIFA 314 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~--~~~a~~~~~~~~~l~~~~~~~~~~~~~l~ 314 (447)
+|+++.|++|.+|..| |++++++++++.++...... .+.++.++ +.++..++..++...+..++++++++++.
T Consensus 307 ~dii~~s~sKalg~~G----G~i~g~~~ii~~~~~~~~~~-~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~ 381 (481)
T PLN02822 307 IDIITAAMGHALATEG----GFCTGSARVVDHQRLSSSGY-VFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLH 381 (481)
T ss_pred CeEEEecchhhhhhCC----eEEEcCHHHHHHHHhcCCce-eeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 6899999999999764 99999999998877544322 22222222 12222333333333456778999999999
Q ss_pred HHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------HHHHHHHHHhh-cccccccccccccC
Q 013210 315 RRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRLMNYLQ-NYAQFGFMAVSLGY 384 (447)
Q Consensus 315 ~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------~~~~~l~~~l~-~~~~~g~~~vs~G~ 384 (447)
+.|++. ++.+..|. .++++.+.+++. .....+.+.|. . .| +.++.+.
T Consensus 382 ~~L~~~~g~~~~~~~-------------------~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e---~G-V~v~~~~ 438 (481)
T PLN02822 382 KGLSDIPGLSIGSNT-------------------LSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKE---DS-VLVVVSK 438 (481)
T ss_pred HHHHhcCCcccCCCC-------------------CCCEEEEEeCCCcccccchHHHHHHHHHHHHhc---CC-EEEEeeC
Confidence 999886 44443222 455888888631 22456777765 4 23 3444331
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
. |... .+-.+..+|+++. ...+++.|+.+.++|+++.
T Consensus 439 ~------~~~~------------~~~~~~~lRi~is-~~~t~edI~~~~~~l~~~~ 475 (481)
T PLN02822 439 R------STLD------------KCRLPVGIRLFVS-AGHTESDILKASESLKRVA 475 (481)
T ss_pred C------CCcC------------CCCCCCcEEEEEC-CCCCHHHHHHHHHHHHHHH
Confidence 1 1100 0111346999999 8788888888888877654
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=210.98 Aligned_cols=218 Identities=12% Similarity=0.092 Sum_probs=163.8
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..||+.||+++ | .+++++|+|+++++..++++++ .+||.|+++.|.|+.+...+. ..|.++..++.
T Consensus 110 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~-----~~g~~~v~v~~ 184 (407)
T PLN02368 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATIS-----LLGGTLVPYYL 184 (407)
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHH-----HcCCEEEEEec
Confidence 46777777775 4 2469999999999999999887 699999999999999988773 25667666643
Q ss_pred C-------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---c-
Q 013210 173 S-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---A- 233 (447)
Q Consensus 173 ~-------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---~- 233 (447)
+ |+++|++++.. .+++++++++||||||.+.+ +++|+++|++||+++|+||+|..+.++. .
T Consensus 185 ~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~ 264 (407)
T PLN02368 185 EESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFI 264 (407)
T ss_pred ccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcc
Confidence 2 78999988831 16899999999999999986 5677888999999999999996655421 0
Q ss_pred -------C-------CCCeEEEeCCCccc-cCCCCeeEEEEE---cChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc
Q 013210 234 -------R-------LGADVVVHSISKFI-SGGADIIAGAVC---GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER 295 (447)
Q Consensus 234 -------~-------~g~di~~~S~sK~~-g~~g~~igG~l~---~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~ 295 (447)
. .+..+++.|+||.| |.+|+|+ ||++ +++++++.+..... . ....+++.+.++..++..
T Consensus 265 s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRi-Gy~i~~~~~~~li~~~~~~~~-~-~~~~~~~~Q~aa~~~l~~ 341 (407)
T PLN02368 265 SAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVEEIYKVAS-I-ALSPNVSGQIFMGLMVNP 341 (407)
T ss_pred cHHHHHhhhcccccccceEEEEecCCcccccCCccce-EEEEEeCCCHHHHHHHHHHhc-c-cCCCCcHHHHHHHHHhCC
Confidence 1 12578999999998 8999999 9998 58888888877643 1 133444556666555543
Q ss_pred CC----c----H---HHHHHHHHHHHHHHHHHHHhC-CCeeeCC
Q 013210 296 IP----H----L---GLRMKEHCHRALIFARRMKKL-GLKVLYP 327 (447)
Q Consensus 296 ~~----~----l---~~~~~~~~~~~~~l~~~L~~~-~~~v~~p 327 (447)
.+ . . ....+.++++++.+.+.|+++ +..+..|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P 385 (407)
T PLN02368 342 PKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFT 385 (407)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCC
Confidence 21 1 2 234567899999999999987 4355444
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-24 Score=206.70 Aligned_cols=244 Identities=15% Similarity=0.118 Sum_probs=184.4
Q ss_pred CHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eE--EEeCChHHHHHHHHHHhc--CCCCeEEEeC
Q 013210 72 EPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AA--YCTASGMSAISSVLMQLC--SSGGHVVAAR 145 (447)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~--~~tsggt~A~~~al~~l~--~~gd~Vi~~~ 145 (447)
..+.|.+++.+.+|||++.|.||+......+++.+.+|+++|.+ .+ +||+||||||..++.... .++++|+++.
T Consensus 39 ~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~ 118 (374)
T PLN03032 39 ELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASR 118 (374)
T ss_pred HHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCC
Confidence 45888888888999999999999999999999999999999974 34 999999999999987653 2456899999
Q ss_pred CCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccC--CceEEEEEcCCCCCccccCHHHHHHHHHhcC--
Q 013210 146 TLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG--RTKVLYFESISNPTLAVANIPELSRLAHDKG-- 216 (447)
Q Consensus 146 ~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~--~t~lV~i~~~~NptG~v~~l~~I~~la~~~g-- 216 (447)
.+|+++...+. . .|..++.++.+ |+++|++++... ++.+|+++..+|++|.+.|+++|+++|+++|
T Consensus 119 ~~H~Sv~kaa~-~----lg~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~ 193 (374)
T PLN03032 119 ESHYSVFKAAR-M----YRMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYT 193 (374)
T ss_pred CceeHHHHHHH-H----cCCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCC
Confidence 99999988873 2 34444455443 899999999322 5778999999999999999999999999996
Q ss_pred ---CEEEEeCCCCCC--CC-------CccCCCCeEEEeCCCcccc-CCCCeeEEEEEcChHHHHHHHHHhh----hhhhh
Q 013210 217 ---VTVVVDNTFSPL--VL-------SPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQ----GALML 279 (447)
Q Consensus 217 ---i~livD~~~~~~--~~-------~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~----~~~~~ 279 (447)
+++|+|++|+.. ++ +. ..++|.++.|+||+++ |.| + |+++.+++.++.+..... ...+.
T Consensus 194 ~~~~~lHvDaA~gg~~~p~~~~~~~~~~-~~~vDSis~s~HK~~g~P~g--~-G~ll~r~~~~~~~~~~~~Yl~~~d~ti 269 (374)
T PLN03032 194 EDRFYIHCDGALFGLMMPFVSRAPEVTF-RKPIGSVSVSGHKFLGCPMP--C-GVALTRKKHVKALSQNVEYLNSRDATI 269 (374)
T ss_pred CCCeeEEEEccchhhhhhccCCCcccCC-CcCCcEEEECcccccCCCcC--e-EEEEEEchhhHhhccCCcccCCCCCcc
Confidence 589999999432 22 21 2369999999999999 655 4 777776666554422111 01112
Q ss_pred cCCCc--cHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013210 280 LGPTM--NPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKV 324 (447)
Q Consensus 280 ~g~~~--~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v 324 (447)
.|+.. .....|..++ +.+.+.+++++..++++++.+.|++.+..+
T Consensus 270 ~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~ 318 (374)
T PLN03032 270 MGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTC 318 (374)
T ss_pred cCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 33322 2344555444 335577888999999999999999887744
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-23 Score=200.93 Aligned_cols=288 Identities=23% Similarity=0.249 Sum_probs=199.0
Q ss_pred CCCchHHHHHHHHHHHhCC--------CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeE
Q 013210 96 HFNPTVLNLSRQMAALEGT--------EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT 167 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~--------~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~ 167 (447)
...+...++++.++++++. +.+++++|+++++..++.++.++|++|+++.+.|+++...++ ..|.++
T Consensus 33 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~-----~~~~~~ 107 (350)
T cd00609 33 YPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAAR-----LAGAEV 107 (350)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HCCCEE
Confidence 3344556777888877653 469999999999999999998899999999999999988773 256777
Q ss_pred EEeCCC-----CH--HHHHHhhccCCceEEEEEcCCCCCccccCHHHH---HHHHHhcCCEEEEeCCCCCCCC-------
Q 013210 168 TFVDIS-----DH--EMVNSAIVQGRTKVLYFESISNPTLAVANIPEL---SRLAHDKGVTVVVDNTFSPLVL------- 230 (447)
Q Consensus 168 ~~v~~~-----d~--~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I---~~la~~~gi~livD~~~~~~~~------- 230 (447)
..++.+ +. +.++..+ .+++++|++++++||+|.+.|++++ .++|+++|+++|+|++|+.+..
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~-~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~ 186 (350)
T cd00609 108 VPVPLDEEGGFLLDLELLEAAK-TPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPA 186 (350)
T ss_pred EEEecccccCCccCHHHHHhhc-CccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccccc
Confidence 777654 22 5555555 7789999999999999999986544 5899999999999999854322
Q ss_pred --CccCCCCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHH
Q 013210 231 --SPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEH 306 (447)
Q Consensus 231 --~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~ 306 (447)
.....+.|+++.|+||+++.+|.++ |+++.++ ++.+.+...... .....+...+.++...+... +.+....+++
T Consensus 187 ~~~~~~~~~~~~~~s~~K~~~~~g~~~-G~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (350)
T cd00609 187 LALLDAYERVIVLRSFSKTFGLPGLRI-GYLIAPPEELLERLKKLLPY-TTSGPSTLSQAAAAAALDDGEEHLEELRERY 264 (350)
T ss_pred ccCcCccCcEEEEeecccccCCcccce-EEEecCHHHHHHHHHHHHHh-cccCCChHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1233468999999999999777777 8888888 788887765441 11222333333333333333 3455556678
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcc
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
.++++++.+.|++.+.....+. ..|.++++.+........+.+.|.. .| +.+..+...
T Consensus 265 ~~~~~~l~~~L~~~~~~~~~~~------------------~~g~~~~~~~~~~~~~~~~~~~l~~---~g-i~i~~~~~~ 322 (350)
T cd00609 265 RRRRDALLEALKELGPLVVVKP------------------SGGFFLWLDLPEGDDEEFLERLLLE---AG-VVVRPGSAF 322 (350)
T ss_pred HHHHHHHHHHHHhcCCccccCC------------------CccEEEEEecCCCChHHHHHHHHHh---CC-EEEeccccc
Confidence 8899999999988765321111 2456888888754334455555554 23 344433211
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
. ......+||+++ .. ++.++.+.++|+
T Consensus 323 ~---------------------~~~~~~iRi~~~-~~--~~~i~~~~~al~ 349 (350)
T cd00609 323 G---------------------EGGEGFVRLSFA-TP--EEELEEALERLA 349 (350)
T ss_pred c---------------------cCCCCeEEEEee-CC--HHHHHHHHHHhh
Confidence 0 012478999999 66 777777777664
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=209.05 Aligned_cols=294 Identities=17% Similarity=0.140 Sum_probs=186.0
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcC-----CCCeEEE-eCCCchhHHHHHHhhc-CcccCee
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCS-----SGGHVVA-ARTLYGGTHALLTHFF-PRACNIT 166 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~-----~gd~Vi~-~~~~y~~~~~~~~~~~-~~~~g~~ 166 (447)
..+++.||+++ | .+.|++|+|+++|+.+++..++. +||.|++ ..|+|+++........ ....+..
T Consensus 77 ~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~ 156 (416)
T PRK09440 77 DELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPN 156 (416)
T ss_pred HHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccc
Confidence 46778888775 3 25699999999999999998885 5899999 6999999876442100 0001222
Q ss_pred EEEeCC------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------
Q 013210 167 TTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------ 231 (447)
Q Consensus 167 ~~~v~~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------ 231 (447)
+..++. .|+++|+ + .++++++++++||||||.+.+ +++|+++|+++|+++|+||+|..+...
T Consensus 157 ~~~~~~~~~~~~~d~~~l~--~-~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~ 233 (416)
T PRK09440 157 IELLPEGQFKYHVDFEHLH--I-DEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEA 233 (416)
T ss_pred cccccccccccCCCHHHcc--c-CCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhc
Confidence 222221 2677776 3 567899999999999999997 668888999999999999999532211
Q ss_pred -ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcH---HH-HHHHH
Q 013210 232 -PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL---GL-RMKEH 306 (447)
Q Consensus 232 -~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l---~~-~~~~~ 306 (447)
+...+..+++.|+||+ +.+|.|+ ||+++++++++.+....... ....+.+.+.++..++..-... .. ..+.+
T Consensus 234 ~~~~~~~vI~~~SfSK~-~~pGlRi-G~~i~~~~l~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 310 (416)
T PRK09440 234 TPLWNPNIILCMSLSKL-GLPGVRC-GIVIADEEIIEALSNMNGII-SLAPGRLGPAIAAEMIESGDLLRLSETVIRPFY 310 (416)
T ss_pred CccccCCeEEEeccccc-CCCcceE-EEEeCCHHHHHHHHHHHHHh-ccCCCcHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 1112467999999996 8899999 99999999998887765521 1223444455555554432221 12 23446
Q ss_pred HHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccc
Q 013210 307 CHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 307 ~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs 381 (447)
+++++.+.+.|.+. +..+..|. .|.++|+.++. ......+.+.+... | +.+.
T Consensus 311 ~~r~~~~~~~L~~~l~~~~~~~~~p~-------------------gg~fiw~~~~~~~~~~~~~~~~l~~~---g-V~v~ 367 (416)
T PRK09440 311 RQKVQLAIALLRRYLPDEPCLIHKPE-------------------GAIFLWLWFKDLPITTEELYQRLKAR---G-VLVV 367 (416)
T ss_pred HHHHHHHHHHHHHhcccCCeEEecCC-------------------CceEEEEECCCCCCCHHHHHHHHHHC---C-EEEe
Confidence 67777777887654 12333232 46789998874 22345666666542 3 4555
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~ 439 (447)
.|.... +.... ..+...+++|||++ . ++.++.++.|.++++++
T Consensus 368 pg~~F~----~~~~~----------~~~~~~~~iRis~~-~~~~~l~~~i~~l~~~~~~~ 412 (416)
T PRK09440 368 PGHYFF----PGLDE----------DWPHAHQCIRMNYV-QDDEEIEKGIAILAEEVEKA 412 (416)
T ss_pred chHhhC----CCCcc----------ccCCcCceEEEEec-CCHHHHHHHHHHHHHHHHHH
Confidence 442210 00000 00001368999997 4 33444455555555544
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-23 Score=204.95 Aligned_cols=289 Identities=14% Similarity=0.168 Sum_probs=196.1
Q ss_pred chHHHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHhcCCCCeEEEeCC-CchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 99 PTVLNLSRQMAALEGTE----AAYCTASGMSAISSVLMQLCSSGGHVVAART-LYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~-~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
...+++++.+++++|++ .+++++||++++..++.+++.++|++++..+ .|+.....+ ... .|.++..++.+
T Consensus 31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~---a~~-~g~~~~~i~~~ 106 (355)
T TIGR03301 31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKI---CEY-LGIPHTDLNFS 106 (355)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHH---HHH-cCCceEEEecC
Confidence 66789999999999975 4678999999999999999888887665554 444322211 122 57777776643
Q ss_pred -----CHHHHHHhhcc-CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCC
Q 013210 174 -----DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSIS 245 (447)
Q Consensus 174 -----d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~s 245 (447)
|++++++++.. +++++|++.+++|++|.+.|+++|.++|++||+++|+|+++ +...++...+++|+++.|++
T Consensus 107 ~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~ 186 (355)
T TIGR03301 107 EYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASAN 186 (355)
T ss_pred CCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCC
Confidence 78999998832 45678888899999999999999999999999999999987 33345555668999999999
Q ss_pred ccc-cCCCCeeEEEEEcChHHHHHHHHHhhh---------------hhhhcCCCcc-HHHHHHHHccC---CcHHHHHHH
Q 013210 246 KFI-SGGADIIAGAVCGPANLVNSMMDLHQG---------------ALMLLGPTMN-PKVAFELSERI---PHLGLRMKE 305 (447)
Q Consensus 246 K~~-g~~g~~igG~l~~~~~~~~~l~~~~~~---------------~~~~~g~~~~-~~~a~~~~~~~---~~l~~~~~~ 305 (447)
|++ |++| + |+++.++++++.+...... .....+.+.. ..++..++..+ ..+.+..++
T Consensus 187 K~l~~~~G--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~ 263 (355)
T TIGR03301 187 KCLEGVPG--F-GFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIAR 263 (355)
T ss_pred cccccCCc--e-eEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 987 5555 4 9999999888776521000 0001111111 11212222222 225667778
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhccccccccccccc
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
++++++++.+.|++.+.++..|... ..+.++++.++.. .....+.+.|... | +.++.|
T Consensus 264 ~~~~~~~~~~~L~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~i~~~ 323 (355)
T TIGR03301 264 YRRNRELLVDGLRALGFQPLLPERW----------------QSPIIVSFLYPDDPDFDFDDFYQELKER---G-FVIYPG 323 (355)
T ss_pred HHHHHHHHHHHHHHcCCeeecCCCC----------------CCCcEEEEECCCCCcchHHHHHHHHHHC---C-EEEECC
Confidence 8999999999998887765443210 1234678888741 2345677777753 3 344333
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+. ...+.||||+. ..++.+.++.+.++|+++
T Consensus 324 ~~------------------------~~~~~iRis~~-~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 324 KL------------------------TLADTFRIGTI-GEIDAADIERLLEAIKDA 354 (355)
T ss_pred cc------------------------ccccEEEEecC-CCCCHHHHHHHHHHHHhh
Confidence 10 01267999986 567788888888887653
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=200.93 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHH
Q 013210 101 VLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNS 180 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 180 (447)
...+++.+|+..|. ++++|+|+++|+.+++.. +.+||.|+++.|+|+.+...++ ..|.++..++ .|++.+++
T Consensus 42 ~~~l~~~ia~~~~~-~I~vt~G~~~al~~~~~~-~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~~~-~d~~~l~~ 113 (311)
T PRK08354 42 YEWLEEEFSKLFGE-PIVITAGITEALYLIGIL-ALRDRKVIIPRHTYGEYERVAR-----FFAARIIKGP-NDPEKLEE 113 (311)
T ss_pred hHHHHHHHHHHHCC-CEEECCCHHHHHHHHHHh-hCCCCeEEEeCCCcHHHHHHHH-----HcCCEEeecC-CCHHHHHH
Confidence 36799999999984 799999999999988754 4589999999999999988773 3677777664 47889988
Q ss_pred hhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc--CCCCeEEEeCCCccccCCCCee
Q 013210 181 AIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA--RLGADVVVHSISKFISGGADII 255 (447)
Q Consensus 181 ~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~--~~g~di~~~S~sK~~g~~g~~i 255 (447)
++ + +++++++++||||||.+.+ +++|+++|+++|+++|+||+|..+.++.. .....+++.|+||.++.+|.|+
T Consensus 114 ~~-~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRi 191 (311)
T PRK08354 114 LV-E-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRV 191 (311)
T ss_pred hh-c-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCcccee
Confidence 87 4 5778999999999999987 56777888899999999999977654321 2357899999999999999999
Q ss_pred EEEEEcChHHHHHHHHHh
Q 013210 256 AGAVCGPANLVNSMMDLH 273 (447)
Q Consensus 256 gG~l~~~~~~~~~l~~~~ 273 (447)
||+++ +.+.++..+
T Consensus 192 -G~~v~---~~~~l~~~~ 205 (311)
T PRK08354 192 -GYVKG---FEEAFRSVR 205 (311)
T ss_pred -eeeee---hHHHHHHcC
Confidence 99987 445555444
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=206.05 Aligned_cols=275 Identities=15% Similarity=0.061 Sum_probs=192.4
Q ss_pred cccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC----eEEE--eCChHHHHHHHHHHhcC--
Q 013210 66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE----AAYC--TASGMSAISSVLMQLCS-- 136 (447)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~----~~~~--tsggt~A~~~al~~l~~-- 136 (447)
||++.|++ +.|...++..++||++ .++.. ...+++++.+|+++|.+ .+.+ |+||||||++++.+...
T Consensus 50 tt~~~p~~~~~~~~~l~~~~~np~s---~~~~~-~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~ 125 (431)
T TIGR01788 50 TTWMEPEARKLMDETINKNMIDKDE---YPQTA-EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRW 125 (431)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCccc---CccHH-HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHH
Confidence 67777776 7788888878888866 35544 67788999999999976 3555 89999999999866431
Q ss_pred ------CC-----CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 137 ------SG-----GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 137 ------~g-----d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
.| .+|+++..+|.++...+. ..|++++.++++ |+++|++++ +++|.+|+++.++|++
T Consensus 126 ~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~-----~lg~~v~~i~~d~~~~~vd~~~L~~~i-~~~t~lV~~t~g~t~t 199 (431)
T TIGR01788 126 RKRMEAAGKPTDKPNLVMGSNVQVCWEKFAR-----YFDVELREVPMDPGRYVIDPEQVVEAV-DENTIGVVCILGTTYT 199 (431)
T ss_pred HHHHHhcCCCCCCcEEEEcCcchHHHHHHHH-----HcCceeEEEecCCCceeeCHHHHHHHH-hhCCeEEEEEeCCCCC
Confidence 12 379999999999987763 246677666643 789999999 7889999999999999
Q ss_pred ccccCHHHHHHHHHhc------CCEEEEeCCCCCCC---------CCccCCCCeEEEeCCCccc-cCCCCeeEEEEEcCh
Q 013210 200 LAVANIPELSRLAHDK------GVTVVVDNTFSPLV---------LSPARLGADVVVHSISKFI-SGGADIIAGAVCGPA 263 (447)
Q Consensus 200 G~v~~l~~I~~la~~~------gi~livD~~~~~~~---------~~~~~~g~di~~~S~sK~~-g~~g~~igG~l~~~~ 263 (447)
|.++|+++|+++|+++ |+++|+|.+|+.+. .+....++|.++.|.||++ +++| + |+++.++
T Consensus 200 G~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~-G~l~~r~ 276 (431)
T TIGR01788 200 GEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--V-GWVIWRD 276 (431)
T ss_pred cccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCC--c-EEEEEeC
Confidence 9999999999999999 99999999995321 1222337899999999988 7776 4 7776543
Q ss_pred H--HHHHHHHH---hhhh---hhhcCCCc--cHHHHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCC
Q 013210 264 N--LVNSMMDL---HQGA---LMLLGPTM--NPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLE 330 (447)
Q Consensus 264 ~--~~~~l~~~---~~~~---~~~~g~~~--~~~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~ 330 (447)
. +.+.+... -.+. ....+... .....|..++.+ ..+.+..++..++++++.+.|++.+. ++..|. +
T Consensus 277 ~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~-~ 355 (431)
T TIGR01788 277 EEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDG-S 355 (431)
T ss_pred hHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCC-C
Confidence 3 22222110 0000 00111111 122234443333 34667778889999999999998864 666542 1
Q ss_pred CCchhHHHHHHhccCCCcCcEEEEEeCC----HHHHHHHHHHhhc
Q 013210 331 DHPHHELLKSMANKEYGFGGLLCLDMET----EEKANRLMNYLQN 371 (447)
Q Consensus 331 ~~p~~~l~~~~~~~~~g~g~~~~~~l~~----~~~~~~l~~~l~~ 371 (447)
..++++|.+++ ......+.+.|..
T Consensus 356 -----------------~~~iV~Fr~~~~~~~~~~~~~l~~~L~~ 383 (431)
T TIGR01788 356 -----------------GIPLVAFKLKDDADPGYTLYDLSHRLRE 383 (431)
T ss_pred -----------------CceEEEEEeCCCCCCCcCHHHHHHHHHH
Confidence 23499999874 1234566777765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=206.63 Aligned_cols=287 Identities=17% Similarity=0.143 Sum_probs=193.8
Q ss_pred chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHH-HHHhcCC--CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 99 PTVLNLSRQMAALEGTE--AAYCTASGMSAISSV-LMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~a-l~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
+..+++++.+++++|.+ .++++++|+++.+.+ +..++.+ ||+|+++++.|+++...+.....+ .|.+++.++.+
T Consensus 64 ~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~-~g~~~~~v~~~ 142 (398)
T cd00613 64 QALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEP-LGIEVVEVPSD 142 (398)
T ss_pred HHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhccc-CCcEEEEeccC
Confidence 45678999999999986 677777666554444 4445565 999999999999998887544333 56888877764
Q ss_pred -----CHHHHHHhhccCCceEEEEEcCCCCCccccCH-HHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCC
Q 013210 174 -----DHEMVNSAIVQGRTKVLYFESISNPTLAVANI-PELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSIS 245 (447)
Q Consensus 174 -----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l-~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~s 245 (447)
|++++++++ +++|++|++++|+ ++|.+.|+ ++|+++|+++|+++|+|++|. ....++..+++|+++.|+|
T Consensus 143 ~~~~~d~~~l~~~i-~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~ 220 (398)
T cd00613 143 EGGTVDLEALKEEV-SEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQ 220 (398)
T ss_pred CCCCcCHHHHHHhc-CCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeecc
Confidence 689999999 7889999999985 89999985 999999999999999999883 2344455678999999999
Q ss_pred ccccCC---CCeeEEEEEcChHHHHHHHHHh---------------------------hhhh-hhcCCCccHHHHHHHHc
Q 013210 246 KFISGG---ADIIAGAVCGPANLVNSMMDLH---------------------------QGAL-MLLGPTMNPKVAFELSE 294 (447)
Q Consensus 246 K~~g~~---g~~igG~l~~~~~~~~~l~~~~---------------------------~~~~-~~~g~~~~~~~a~~~~~ 294 (447)
|++++. |.+. |+++.++++++.+.... .+.. ...+.....+.++..+.
T Consensus 221 K~~~p~g~Ggp~~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~ 299 (398)
T cd00613 221 KTGVPHGGGGPGA-GFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIV 299 (398)
T ss_pred ccCCCCCCCCCce-eEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHH
Confidence 998321 4444 99998887776541100 0000 01111112222332222
Q ss_pred cC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhh
Q 013210 295 RI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQ 370 (447)
Q Consensus 295 ~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~ 370 (447)
.+ ..+.+..+++.++++++.+.|++++.... +. .+ ....++|.++. ......+.+.|.
T Consensus 300 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~---~~--------------~~~~v~~~~~~~~~~~~~~~~~~L~ 361 (398)
T cd00613 300 YLGPEGLKEIAERAHLNANYLAKRLKEVGGVLP-FN---GP--------------FFHEFVLRLPPLYGIRAEDLAKALI 361 (398)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-CC---CC--------------eeEEEEEEcCCcchHHHHHHHHhhh
Confidence 22 23455667889999999999988765321 11 01 12356777764 334677877776
Q ss_pred cccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 371 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 371 ~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
.. |+ .+.. .. -...+.||+|+. ..+++++|+.+.++|
T Consensus 362 ~~---gi-~~~~-----------~~-------------~~~~~~lRis~~-~~~t~edid~~~~~L 398 (398)
T cd00613 362 DG---GF-HAPT-----------MY-------------LPVDGTLMIEPT-ETETKEELDALLEAL 398 (398)
T ss_pred hc---Cc-cccc-----------cc-------------cCCCCeEEEEcC-CCCCHHHHHHHHHhC
Confidence 52 32 1110 00 012468999999 999999999987764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=211.62 Aligned_cols=144 Identities=12% Similarity=0.247 Sum_probs=117.1
Q ss_pred eEEEeCChHHHHHHHHHH-----hcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-------CCHHHHHHhhc
Q 013210 116 AAYCTASGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIV 183 (447)
Q Consensus 116 ~~~~tsggt~A~~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i~ 183 (447)
++++|+|+++|+..++.+ ++.+||+|+++.|.|+.+...+. +. . .+..++.++. .|+++|++++
T Consensus 163 ~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~-l~-g-~~~~~v~v~~~~~~~f~~d~~~l~~~~- 238 (527)
T PRK09275 163 DLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE-LP-R-YDLEVVHINADEENEWQYPDSELEKLR- 238 (527)
T ss_pred eEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHH-Hc-C-CCeEEEEeecCcccCCCCCHHHHHhhc-
Confidence 699999999999999886 68999999999999999987652 21 1 3555555542 1678999988
Q ss_pred cCCceEEEEEcCCCCCccccC---HHHHHHHHHh--cCCEEEEeCCCCCCCCCcc---C--CCCeEEEeCCCccccCCCC
Q 013210 184 QGRTKVLYFESISNPTLAVAN---IPELSRLAHD--KGVTVVVDNTFSPLVLSPA---R--LGADVVVHSISKFISGGAD 253 (447)
Q Consensus 184 ~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~--~gi~livD~~~~~~~~~~~---~--~g~di~~~S~sK~~g~~g~ 253 (447)
++++++|++++|+||||.+.+ +++|+++|++ +++++|+||+|..+..... . ....+++.|+||.||.+|+
T Consensus 239 ~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~ 318 (527)
T PRK09275 239 DPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGW 318 (527)
T ss_pred CCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHh
Confidence 889999999999999999997 6788888964 5999999999965543211 1 1468999999999999999
Q ss_pred eeEEEEEcChH
Q 013210 254 IIAGAVCGPAN 264 (447)
Q Consensus 254 ~igG~l~~~~~ 264 (447)
|+ ||++++++
T Consensus 319 Rl-G~i~~~~~ 328 (527)
T PRK09275 319 RL-GVIALHED 328 (527)
T ss_pred HH-hhhhcCch
Confidence 99 99998775
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=202.40 Aligned_cols=254 Identities=14% Similarity=0.091 Sum_probs=165.7
Q ss_pred CccccCCCCchHHHHHHHHHHHhC-------C---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhc
Q 013210 90 FFIYSRHFNPTVLNLSRQMAALEG-------T---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFF 159 (447)
Q Consensus 90 ~~~~~r~~~~~~~~l~~~ia~l~g-------~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~ 159 (447)
.+.|+.. .....+++.+++.+. . +++++|+|+++++.+++.+++++||.|+++.|.|+.+...+..
T Consensus 37 ~~~Y~~~--~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~-- 112 (388)
T PRK08637 37 IFPYAPP--QGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNT-- 112 (388)
T ss_pred ccCCCCC--CCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHH--
Confidence 4556542 224578888876641 1 3479999999999999999999999999999999988765421
Q ss_pred CcccCeeEEEeCC--C----CHHHHHHhhc---cCCceEEEEEcCCCCCccccC---HHHHHHHHHh-----cCCEEEEe
Q 013210 160 PRACNITTTFVDI--S----DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN---IPELSRLAHD-----KGVTVVVD 222 (447)
Q Consensus 160 ~~~~g~~~~~v~~--~----d~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~-----~gi~livD 222 (447)
..|.++..++. + |++++++.++ .+.+.++++++||||||.+.+ +++|+++|++ |++++|+|
T Consensus 113 --~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~D 190 (388)
T PRK08637 113 --RRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVD 190 (388)
T ss_pred --hcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 14777777664 2 7899988873 245567778899999999986 5567776664 89999999
Q ss_pred CCCCCCCCCc-------cC---C-CCe--EEEeCCCccccCCCCeeEEEEEcC------hHHHHHHHHHhhh---hhhhc
Q 013210 223 NTFSPLVLSP-------AR---L-GAD--VVVHSISKFISGGADIIAGAVCGP------ANLVNSMMDLHQG---ALMLL 280 (447)
Q Consensus 223 ~~~~~~~~~~-------~~---~-g~d--i~~~S~sK~~g~~g~~igG~l~~~------~~~~~~l~~~~~~---~~~~~ 280 (447)
|+|..+.++. .. . +.. +.+.|+||.++.+|.|+ ||++.+ +++++.+...... .....
T Consensus 191 e~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRl-G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (388)
T PRK08637 191 DAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRV-GFITFGTKAGSSQTVKEALEKKVKGLIRSNISN 269 (388)
T ss_pred ccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccce-EEEEEccccCCcHHHHHHHHHHHHHHhhcccCC
Confidence 9996664321 11 1 222 34459999999999999 998743 5777766532110 01122
Q ss_pred CCCccHHHHHHHHccCCc---HHHHHHHHHHHHHHHHHHHHhCCC----eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 281 GPTMNPKVAFELSERIPH---LGLRMKEHCHRALIFARRMKKLGL----KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 281 g~~~~~~~a~~~~~~~~~---l~~~~~~~~~~~~~l~~~L~~~~~----~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
.+.+.+.++..++..-.. +......++++++.+.+.|++.+. .+..| ..|.++|
T Consensus 270 ~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~-------------------~~g~~~~ 330 (388)
T PRK08637 270 GPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPF-------------------NSGYFMC 330 (388)
T ss_pred CCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc-------------------cceEEEE
Confidence 344444444444432111 122233466667777777766531 22211 2466888
Q ss_pred EEeCCHHHHHHHHHHhh
Q 013210 354 LDMETEEKANRLMNYLQ 370 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~ 370 (447)
+.+++. +...|.+.|.
T Consensus 331 ~~l~~~-~~~~l~~~l~ 346 (388)
T PRK08637 331 LKLKGV-DAEELRVHLL 346 (388)
T ss_pred ecCChH-HHHHHHHHHh
Confidence 888743 3567777764
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=188.96 Aligned_cols=214 Identities=15% Similarity=0.182 Sum_probs=164.3
Q ss_pred chHHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 99 PTVLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
.-+..+|+.+|++++ ++++++|+|+.+|+..++.++.++|-.|+++.|.|+-+.... ...|++++++
T Consensus 103 ~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a-----~~~~lEVR~y 177 (447)
T KOG0259|consen 103 VGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRA-----IYSGLEVRYY 177 (447)
T ss_pred cccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhh-----hhcCceeEee
Confidence 344678999999953 467999999999999999999999999999999999775544 2368899988
Q ss_pred CCC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------C
Q 013210 171 DIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------R 234 (447)
Q Consensus 171 ~~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~------~ 234 (447)
+.. |++.+|+++ +++|.++++.+|+||.|.+.. |++|+++|+++|+++|.||+|+++.+... .
T Consensus 178 dlLPe~~weIDL~~veal~-DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~ 256 (447)
T KOG0259|consen 178 DLLPEKDWEIDLDGVEALA-DENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGK 256 (447)
T ss_pred cccCcccceechHHHHHhh-ccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhh
Confidence 764 999999988 999999999999999999985 88999999999999999999977655321 1
Q ss_pred C---CCeEEEeCCCccccCCCCeeEEEEEcCh--------HHHHHHHHHhhhhhhhcCCCccHHHHHH-HHc-cCC-cHH
Q 013210 235 L---GADVVVHSISKFISGGADIIAGAVCGPA--------NLVNSMMDLHQGALMLLGPTMNPKVAFE-LSE-RIP-HLG 300 (447)
Q Consensus 235 ~---g~di~~~S~sK~~g~~g~~igG~l~~~~--------~~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~-~~~-~l~ 300 (447)
+ -..+.++|.||-+-.||+|+ ||++..+ ..++.+....+ ...|+....++|.- .+. .-+ .+.
T Consensus 257 fssiVPVitlggisKrW~VPGWRl-GWi~~hD~~gvf~~~~~~q~~~~~~~---~~~~p~TiiQ~AlP~IL~kTp~efF~ 332 (447)
T KOG0259|consen 257 FSSIVPVITLGGISKRWIVPGWRL-GWIALHDPRGVFRDTKVVQGIKNFLD---IIPGPATIIQGALPDILEKTPEEFFD 332 (447)
T ss_pred ccccCceEeecccccccccCCcee-eeEEEecccccccchHHHHHHHHHHh---ccCCccHhHHHHhHHHHHhChHHHHH
Confidence 1 25788999999999999999 9986532 23344444433 23444433333332 222 112 245
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 013210 301 LRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
.+..-++.+++...++|++++.
T Consensus 333 k~~~~lk~na~l~y~~Lk~IP~ 354 (447)
T KOG0259|consen 333 KKLSFLKSNADLCYSRLKDIPC 354 (447)
T ss_pred HHHHHHHhhHHHHHHHHhcCCC
Confidence 5666689999999999999865
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-23 Score=205.93 Aligned_cols=287 Identities=17% Similarity=0.224 Sum_probs=196.9
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC---------CC-CeEEEeCCCchhHHHHHHhh--------
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS---------SG-GHVVAARTLYGGTHALLTHF-------- 158 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~---------~g-d~Vi~~~~~y~~~~~~~~~~-------- 158 (447)
..+...+++++++++.+.+.++|++||++|+..+++.+.. +| ++|++....||+....+...
T Consensus 81 ~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~ 160 (401)
T PRK00854 81 RNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARG 160 (401)
T ss_pred CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccc
Confidence 3567789999999999998999999999999999987742 23 58898888888764333111
Q ss_pred -cCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-
Q 013210 159 -FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP- 232 (447)
Q Consensus 159 -~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~- 232 (447)
... ....+.+++..|+++|++++ .+++++|++++|+||+|.+.| +++|.++|++||+++|+||+|+++....
T Consensus 161 ~~~~-~~~~~~~~~~~d~~~le~~i-~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~ 238 (401)
T PRK00854 161 GFGP-FTPGFRVVPFGDAEALEAAI-TPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK 238 (401)
T ss_pred cCCC-CCCCeEEeCCCCHHHHHHHh-CCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch
Confidence 111 12345677778999999999 778999999999999999987 9999999999999999999996564432
Q ss_pred ------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHH
Q 013210 233 ------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH 306 (447)
Q Consensus 233 ------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~ 306 (447)
.....|+++. +|++++..+++ |++++++++++.+..... ..+..++.+.+.++...+..++. ....+++
T Consensus 239 ~~~~~~~g~~~D~~~~--~K~l~gg~~~i-g~v~~~~~~~~~l~~~~~-~~t~~~~~~~~aa~~a~L~~l~~-~~~~~~~ 313 (401)
T PRK00854 239 LLAEEHEGIEADVTLI--GKALSGGFYPV-SAVLSNSEVLGVLKPGQH-GSTFGGNPLACAVARAALKVLTE-EGMIENA 313 (401)
T ss_pred HhHHhhcCCCCCEEEe--cccccCCccCe-EEEEEcHHHHhcccCCCC-CCCCCcCHHHHHHHHHHHHHHHH-cCHHHHH
Confidence 1234677774 69998655677 899999998887753322 11122322323233333322221 1245677
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCc
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYY 385 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~ 385 (447)
+++.+++.+.|++.+.... . ...+.|.++.+.+. +......+.+.|... |+ .++.
T Consensus 314 ~~~~~~l~~~L~~~~~~~~--~---------------~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~---GV-~v~~--- 369 (401)
T PRK00854 314 AEMGAYFLEGLRSIRSNIV--R---------------EVRGRGLMLAVELEPEAGGARQYCEALKER---GL-LAKD--- 369 (401)
T ss_pred HHHHHHHHHHHHhhccCce--E---------------EEeccceEEEEEEecCchhHHHHHHHHHHC---Ce-EEec---
Confidence 8888899999987643211 0 00146778888774 333456788887752 32 2210
Q ss_pred cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 386 ~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...+.|||++. ...+++.|+.+.++|++.
T Consensus 370 ------------------------~~~~~lR~~p~-~~~t~e~i~~~i~~l~~~ 398 (401)
T PRK00854 370 ------------------------THDHTIRLAPP-LVITREQVDWALEQIAKV 398 (401)
T ss_pred ------------------------CCCCEEEEeCC-cccCHHHHHHHHHHHHHH
Confidence 01368999998 777777777777777654
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=208.31 Aligned_cols=332 Identities=17% Similarity=0.189 Sum_probs=208.0
Q ss_pred ccccccccccccCCH-HHHHHhhcCCC--CCCCCCccccCCCCchHHH-HHHHHHHHhCCCeE-EEeCChHHHHHHHHHH
Q 013210 59 NMSIEASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVLN-LSRQMAALEGTEAA-YCTASGMSAISSVLMQ 133 (447)
Q Consensus 59 ~~pi~~att~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~-l~~~ia~l~g~~~~-~~tsggt~A~~~al~~ 133 (447)
+..+..+.+++.|.+ +.+...+...| ++|++.+..+....+.+++ .++.+++++|++.. ++++||++|+..++.+
T Consensus 21 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~ 100 (402)
T cd00378 21 TLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYFA 100 (402)
T ss_pred CeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHHHHHHHH
Confidence 344566777777766 66655554444 5666555444433344444 45567899998763 4445789999999999
Q ss_pred hcCCCCeEEEeCCCchhHHHHHHh-hcCcccCeeEEEeC--CC------CHHHHHHhhccCCceEEEEEcCCCCCccccC
Q 013210 134 LCSSGGHVVAARTLYGGTHALLTH-FFPRACNITTTFVD--IS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN 204 (447)
Q Consensus 134 l~~~gd~Vi~~~~~y~~~~~~~~~-~~~~~~g~~~~~v~--~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~ 204 (447)
++++||+|+++.++|+++...... .... .|.++..++ .+ |++++++++.++++++|++++++|| ...|
T Consensus 101 l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~--~~~~ 177 (402)
T cd00378 101 LLEPGDTIMGLDLSHGGHLTHGSFTKVSA-SGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYP--RPID 177 (402)
T ss_pred hcCCCCEEEEecCccCccccccccccccc-cceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC--CCcC
Confidence 999999999999999877544211 1222 565544432 22 8999999884468999998888764 6779
Q ss_pred HHHHHHHHHhcCCEEEEeCCC-CCCCC-----CccCCCCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhh
Q 013210 205 IPELSRLAHDKGVTVVVDNTF-SPLVL-----SPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGAL 277 (447)
Q Consensus 205 l~~I~~la~~~gi~livD~~~-~~~~~-----~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~ 277 (447)
+++|+++|+++|+++|+|++| .++.. .+.. ++|+++.|+||+++ |.+. |+++.++ ++++.+.......
T Consensus 178 ~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~dv~~~s~sK~l~--G~~g-g~i~~~~~~~~~~l~~~~~~~- 252 (402)
T cd00378 178 FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GADVVTTTTHKTLR--GPRG-GLILTRKGELAKKINSAVFPG- 252 (402)
T ss_pred HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCcEEEeccccCCC--CCCc-eEEEeccHHHHHHHHHHhCcc-
Confidence 999999999999999999997 43321 2223 67999999999984 3343 7777665 8888886554321
Q ss_pred hhcCCC-ccHHHH-HHHHc-cCC-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 278 MLLGPT-MNPKVA-FELSE-RIP-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 278 ~~~g~~-~~~~~a-~~~~~-~~~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..++. .....+ ..++. ... ...++.+++.++++++.+.|++.++.+..+. ..+.+++
T Consensus 253 -~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~v~ 313 (402)
T cd00378 253 -LQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGG------------------TDNHLVL 313 (402)
T ss_pred -ccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEeecC------------------CCCeEEE
Confidence 12222 122222 11122 222 4556777889999999999998876554211 1245888
Q ss_pred EEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC----HHHH
Q 013210 354 LDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT----LDQR 428 (447)
Q Consensus 354 ~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~----~~~~ 428 (447)
+.++. ......+.+.|.. .| +.+..+.. |..... ......+||++. ..+ .++.
T Consensus 314 v~~~~~~~~~~~~~~~l~~---~g-I~v~~~~~------p~~~~~-----------~~~~~~lRi~~~-~~~~~~~~~~d 371 (402)
T cd00378 314 VDLRPKGITGKAAEDALEE---AG-ITVNKNTL------PWDPSS-----------PFVPSGIRIGTP-AMTTRGMGEEE 371 (402)
T ss_pred EeCCccCCCHHHHHHHHHH---cC-cEEcCCcC------CCCCCC-----------CCCCCeeEecCH-HHHHhCCCHHH
Confidence 88862 1123445555554 23 34332211 211100 012467999987 422 3566
Q ss_pred HHHHHHHHHHh
Q 013210 429 WSQFEKALSRM 439 (447)
Q Consensus 429 i~~l~~al~~~ 439 (447)
++.+.+.|.++
T Consensus 372 i~~~~~~l~~~ 382 (402)
T cd00378 372 MEEIADFIARA 382 (402)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=204.08 Aligned_cols=221 Identities=14% Similarity=0.130 Sum_probs=156.0
Q ss_pred ccccCCCCchHHHHHHHHHHHhC--------CCeEE--EeCChHHHHHHHHH---HhcCCCCeEEEeCCCchhHHHHHHh
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEG--------TEAAY--CTASGMSAISSVLM---QLCSSGGHVVAARTLYGGTHALLTH 157 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g--------~~~~~--~tsggt~A~~~al~---~l~~~gd~Vi~~~~~y~~~~~~~~~ 157 (447)
..|+. ..-..++|+.+|+++. .++++ .|+||++|+..+++ +++++||+|++++|+|+.+...+.
T Consensus 66 ~~Y~~--~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~- 142 (404)
T PTZ00376 66 KEYLP--IEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFK- 142 (404)
T ss_pred CCCCC--CCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-
Confidence 44553 2233578899998752 23466 48999999988764 567899999999999999988773
Q ss_pred hcCcccCeeEEEeCC---C----CHHHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCC
Q 013210 158 FFPRACNITTTFVDI---S----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 158 ~~~~~~g~~~~~v~~---~----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~ 225 (447)
..|.++..++. + |++.+++++++ ++++++++++||||||.+.+ +++|+++|++||+++|+|++|
T Consensus 143 ----~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y 218 (404)
T PTZ00376 143 ----SAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAY 218 (404)
T ss_pred ----HcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhh
Confidence 36778777765 2 78899888842 35678888999999999986 667888899999999999999
Q ss_pred CCCCCCc--------c---CC-CCeEEEeCCCccccCCCCeeEEEE---EcChHHHHHHH----HHhhhhhhhcC-CCcc
Q 013210 226 SPLVLSP--------A---RL-GADVVVHSISKFISGGADIIAGAV---CGPANLVNSMM----DLHQGALMLLG-PTMN 285 (447)
Q Consensus 226 ~~~~~~~--------~---~~-g~di~~~S~sK~~g~~g~~igG~l---~~~~~~~~~l~----~~~~~~~~~~g-~~~~ 285 (447)
..+.++. . .. ...+++.||||.++.+|+|+ ||+ ++++++++.+. .... . ...+ +...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRv-G~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~ 295 (404)
T PTZ00376 219 QGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERI-GALHIVCANKEEAANVLSQLKLIIR-P-MYSSPPIHG 295 (404)
T ss_pred cCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccccccc-ceEEEEeCCHHHHHHHHHHHHHHHh-h-hcCCCchHH
Confidence 7665531 1 11 25799999999999999999 998 57877665443 2222 1 0122 2233
Q ss_pred HHHHHHHHccCC-------cHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 286 PKVAFELSERIP-------HLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 286 ~~~a~~~~~~~~-------~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
+.++..++.... .+....++++++++.+.+.|++++
T Consensus 296 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 338 (404)
T PTZ00376 296 ARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALG 338 (404)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444443211 122334567889999999998874
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=203.23 Aligned_cols=296 Identities=16% Similarity=0.134 Sum_probs=193.3
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCC---------------eEEEeCCCchhHHHHHHhhcCc
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGG---------------HVVAARTLYGGTHALLTHFFPR 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd---------------~Vi~~~~~y~~~~~~~~~~~~~ 161 (447)
..+.++++++.+|+++|++.+++|+|+|+|+++++++++++|| +||++.|.|..+...+.... .
T Consensus 43 ~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~-~ 121 (363)
T TIGR01437 43 IKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMV-R 121 (363)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHH-H
Confidence 4467889999999999999999999999999999999998888 89998866654421111111 2
Q ss_pred ccCeeEEEeCCC---CHHHHHHhhccCCceEEE-EEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccCCCC
Q 013210 162 ACNITTTFVDIS---DHEMVNSAIVQGRTKVLY-FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGA 237 (447)
Q Consensus 162 ~~g~~~~~v~~~---d~~~l~~~i~~~~t~lV~-i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~~g~ 237 (447)
..|.++++++.+ |++++++++ +++|++++ +++++||+|.++|+++|+++|++||+++|+|++|+........+|+
T Consensus 122 ~~g~~~v~v~~~~~~d~~~le~ai-~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~~~~~~g~ 200 (363)
T TIGR01437 122 LGGGKVVEAGYANECSAEQLEAAI-TEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQKYYRLGA 200 (363)
T ss_pred hcCCeEEEEcCCCCCCHHHHHHhc-ChhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchHHHHHcCC
Confidence 268888887654 899999999 88898765 6788999999999999999999999999999999621122335689
Q ss_pred eEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhh--hcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM--LLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFA 314 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~--~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~ 314 (447)
|++++|+||+++++ + +|++++++++++.+.....+... ..+. ........++..+ +...+..+++.++++++.
T Consensus 201 D~~~~S~~K~l~gp--~-~G~l~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~ 276 (363)
T TIGR01437 201 DLVIYSGAKAIEGP--T-SGLVLGKKKYIEWVKLQSKGIGRAMKVGK-ENILGLTAALEQYLSTGKESGAEMVAKLTPFI 276 (363)
T ss_pred CEEEEeCCcccCCC--c-eEEEEEcHHHHHHHHhccCCCcceeccCH-HHHHHHHHHHHHHHccCcccHHHHHHHHHHHH
Confidence 99999999988644 4 49999888888776543321100 0010 1111111111111 112234445556677899
Q ss_pred HHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCcccccccc
Q 013210 315 RRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 392 (447)
Q Consensus 315 ~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~ 392 (447)
+.|++++. .+..+.-. ....+ .-..+.|... .......+.+.|...+ +.+..- +
T Consensus 277 ~~L~~i~g~~~~~~~~~--~~~~~----------~~~~v~~~~~~~g~~~~~l~~~L~~~~----~~I~~r--------~ 332 (363)
T TIGR01437 277 EALNTLKGVSASIVQDE--AGRDI----------ARAEIRFDESELGMTAADVVQALRQGE----PAIYTR--------G 332 (363)
T ss_pred HHHhcCCCeEEEEecCC--CCCcC----------ceEEEEEeccCCCCCHHHHHHHHhcCC----CCEEEe--------e
Confidence 99988743 44422100 00000 0123555542 1123567777776421 111111 0
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 393 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 393 a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.....+.+|+++. .-+ +++++.+.++|+++
T Consensus 333 ---------------~~~~~~~~~l~~~-~~~-~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 333 ---------------YKANEGIIEIDPR-SVT-GGQLDIIVERIREI 362 (363)
T ss_pred ---------------eeecCCeEEEEee-cCC-HHHHHHHHHHHHHh
Confidence 1234678999999 655 88899999998765
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-23 Score=201.77 Aligned_cols=303 Identities=17% Similarity=0.180 Sum_probs=204.0
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+...++++.+++++|.+.+++++||++|+..++.++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 17 ~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~ 91 (352)
T cd00616 17 GPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAIL-----LLGATPVFVDIDPDT 91 (352)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHH-----HcCCeEEEEecCCCc
Confidence 5678999999999999999999999999999999988 5889999999999998877663 257788877653
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCcc--CCCCeEEEeCCC--
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPA--RLGADVVVHSIS-- 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~--~~g~di~~~S~s-- 245 (447)
|++++++.+ ++++++|+++ |++|.+.|+++|.++|+++|+++|+|++|+ +...... ....|+.+.|++
T Consensus 92 ~~~d~~~l~~~i-~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~ 167 (352)
T cd00616 92 YNIDPELIEAAI-TPRTKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPT 167 (352)
T ss_pred CCcCHHHHHHhc-CcCCeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCC
Confidence 789999988 7789999875 468999999999999999999999999993 2222221 122588888876
Q ss_pred ccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhh-----------cCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013210 246 KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALML-----------LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 313 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~-----------~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l 313 (447)
|+++++ .||+++.+ +++.+.++..+...... ....++...+...+..++.+....++.+++.+++
T Consensus 168 K~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~ 244 (352)
T cd00616 168 KNLTTG---EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERY 244 (352)
T ss_pred CCCccc---CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999533 25777654 67777776543311100 1123344445444444555666777788899999
Q ss_pred HHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccCcccccc
Q 013210 314 ARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 314 ~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
.+.|++.+ .++..+..... ....++.|.+++ ......+.+.|... | +.+ +..+.-..
T Consensus 245 ~~~L~~~~g~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~v~~~L~~~---g-I~~--~~~~~~~~ 304 (352)
T cd00616 245 KELLADLPGIRLPDVPPGVK--------------HSYHLYVIRLDPEAGESRDELIEALKEA---G-IET--RVHYPPLH 304 (352)
T ss_pred HHHhcCCCCccCCCCCCCCc--------------eeeEEEEEEECCcCCCCHHHHHHHHHHC---C-CCe--eeecCccc
Confidence 99998864 35443321000 123488888863 33456777777752 2 222 21111110
Q ss_pred cccc-c-----cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 391 CSGS-S-----TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 391 ~~a~-~-----~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
+... . .....+.... +..+.||++++ ...++++++.+.++|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~a~~----~~~~~l~l~~~-~~~t~~di~~i~~~l~ 352 (352)
T cd00616 305 HQPPYKKLLGYPPGDLPNAED----LAERVLSLPLH-PSLTEEEIDRVIEALR 352 (352)
T ss_pred cCHhhhhccCCCcCCChHHHH----HHhCeEEccCC-CCCCHHHHHHHHHHhC
Confidence 0000 0 0001111111 22478999999 9999999999988873
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=187.40 Aligned_cols=310 Identities=19% Similarity=0.232 Sum_probs=221.4
Q ss_pred ccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC-CCCeE
Q 013210 63 EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS-SGGHV 141 (447)
Q Consensus 63 ~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~-~gd~V 141 (447)
.+|.|++.|+.+++.++.+... +...||. +++..+||+++|+++|.|..+|++|||.+|.++++.-+. +|..|
T Consensus 26 LRSDTvT~PTdeMr~am~eA~v----gDdVyGe--D~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~ei 99 (384)
T KOG1368|consen 26 LRSDTVTVPTDEMRRAMAEASV----GDDVYGE--DPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEI 99 (384)
T ss_pred cccccccCChHHHHHHHhhccc----CcccccC--CccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceE
Confidence 4789999998888877777663 3467774 677889999999999999999999999999999998765 88999
Q ss_pred EEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhcc-------CCceEEEEEcCCCCCc-cccCHH--
Q 013210 142 VAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-------GRTKVLYFESISNPTL-AVANIP-- 206 (447)
Q Consensus 142 i~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~-------~~t~lV~i~~~~NptG-~v~~l~-- 206 (447)
|+.+..|--.++.- -+....|+.++.+... +++++++++.. +.|++|++|+.+|.+| .+.|++
T Consensus 100 i~gd~~HI~~~E~g--g~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~ 177 (384)
T KOG1368|consen 100 IVGDRAHIHRYEQG--GISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEEL 177 (384)
T ss_pred Eeccchheeehhcc--ChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHH
Confidence 99988774333322 1112246666555432 89999999842 3489999999888777 888866
Q ss_pred -HHHHHHHhcCCEEEEeCCC---CC--CCCCccCC--CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhh
Q 013210 207 -ELSRLAHDKGVTVVVDNTF---SP--LVLSPARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 278 (447)
Q Consensus 207 -~I~~la~~~gi~livD~~~---~~--~~~~~~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~ 278 (447)
+|.+||+++|+.+|+|.+- +. ......++ -.|-+..++||.+|.| +|.+++++++++++.+.+|.
T Consensus 178 ~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAP---VGSViVG~k~FI~kA~~~RK---- 250 (384)
T KOG1368|consen 178 DRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAP---VGSVIVGSKDFIDKARHFRK---- 250 (384)
T ss_pred HHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCC---cccEEEccHHHHHHHHHHHH----
Confidence 6788999999999999873 11 11222222 4688999999999987 67888999999999888877
Q ss_pred hcCCCccHH--HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 279 LLGPTMNPK--VAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 279 ~~g~~~~~~--~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..|+.+.+. .|++++-.+.+....+++-.+++..+++.+...+ +++..|..+. .++.+.
T Consensus 251 alGGGmRQsGvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~et------------------Niv~~~ 312 (384)
T KOG1368|consen 251 ALGGGMRQSGVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEIRVEVPAVET------------------NIVNMV 312 (384)
T ss_pred HhcCchhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccceeeecchhhc------------------ceeeee
Confidence 445544433 3333344444433366677788888999998776 4777664222 267766
Q ss_pred eC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 356 ME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 356 l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
+. ..-.++.+.+.+++. |++. |+-....+||.+. +.-+++.++.+..
T Consensus 313 l~q~~~~~~~l~~~~~k~---gi~l----------------------------m~~~s~r~Rivlh-~Qvt~~~ve~~~~ 360 (384)
T KOG1368|consen 313 LCQARLTAEELCKFLEKN---GILL----------------------------MGGASRRIRIVLH-HQVTDEDVEYVKS 360 (384)
T ss_pred cccccCCHHHHHHHHHHC---CeEE----------------------------eeccccceEEEEE-EecCHHHHHHHHH
Confidence 64 222467788877762 3211 1112244999999 8888888888888
Q ss_pred HHH
Q 013210 435 ALS 437 (447)
Q Consensus 435 al~ 437 (447)
+|+
T Consensus 361 ~~~ 363 (384)
T KOG1368|consen 361 VLS 363 (384)
T ss_pred HHH
Confidence 774
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-23 Score=205.11 Aligned_cols=289 Identities=17% Similarity=0.186 Sum_probs=193.2
Q ss_pred CCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhcC--------cc
Q 013210 95 RHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFP--------RA 162 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~--------~~ 162 (447)
++.++...++++.++++.+. +.++|++||++|+..+++.+..+| ++|+..++.|+++......... ..
T Consensus 81 ~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 160 (398)
T PRK03244 81 LFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEP 160 (398)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCC
Confidence 34556667899999999875 479999999999999998766565 5788888888877543321100 00
Q ss_pred cCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC-------C
Q 013210 163 CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------S 231 (447)
Q Consensus 163 ~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~-------~ 231 (447)
.+..+..++..|++++++.+ .+++++|++++++||+|.+.| +++|.++|++||+++|+||+|+++.. .
T Consensus 161 ~~~~~~~~~~~d~~~l~~~~-~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~ 239 (398)
T PRK03244 161 LPGGVEHVPYGDVDALAAAV-DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQ 239 (398)
T ss_pred CCCCceEeCCCCHHHHHHhh-cCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhh
Confidence 12345666667999999988 678999999999999999987 88999999999999999999965432 1
Q ss_pred ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 232 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 232 ~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
......|++ +++|.++ +|.++ |+++.++++++.+..... ..+..++.+.+.++...+..+.. ....++..++.+
T Consensus 240 ~~~~~pDi~--t~sK~l~-~G~~i-g~~~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~ 313 (398)
T PRK03244 240 HDGVTPDVV--TLAKGLG-GGLPI-GACLAFGPAADLLTPGLH-GSTFGGNPVACAAALAVLDTIAS-EGLLENAERLGE 313 (398)
T ss_pred hhCCCCCEE--EEchhhh-CCccc-EEEEEcHHHHhhccCCCC-cCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 112235655 6889999 67898 888888888777654222 11233334444444444332221 134566677788
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~ 391 (447)
+|.+.|++.+..+. .. ..|.|.+++++++.. .+..+.+++... |+ .++..
T Consensus 314 ~l~~~L~~~~~~~~----~~-------------v~g~g~~~~i~~~~~-~~~~~~~~l~~~---Gv-~~~~~-------- 363 (398)
T PRK03244 314 QLRAGIEALGHPLV----DH-------------VRGRGLLLGIVLTAP-VAKAVEAAAREA---GF-LVNAV-------- 363 (398)
T ss_pred HHHHHHHhcCCCce----ee-------------EeeccEEEEEEEecc-HHHHHHHHHHHC---Ce-EEeec--------
Confidence 89999987532111 00 114678999999643 356777777652 32 22110
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
..+.||||+. ...++++++.+.++|+++-
T Consensus 364 -------------------~~~~iR~~p~-~~~t~~~i~~~~~~l~~~l 392 (398)
T PRK03244 364 -------------------APDVIRLAPP-LIITDAQVDAFVAALPAIL 392 (398)
T ss_pred -------------------CCCEEEEECC-CcCCHHHHHHHHHHHHHHH
Confidence 1367999988 6555666666666665543
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-23 Score=204.06 Aligned_cols=214 Identities=15% Similarity=0.106 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhC--------CCeE--EEeCChHHHHHHHHHHh--cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 101 VLNLSRQMAALEG--------TEAA--YCTASGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~--~~tsggt~A~~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
..++|+.+++++. .+.+ ++|+|+++|+.++++.+ +.+||.|++++|.|+.+...+. ..|.+++
T Consensus 71 ~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~-----~~g~~~v 145 (396)
T PRK09257 71 LAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFE-----AAGLEVK 145 (396)
T ss_pred CHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHH-----HcCCcEE
Confidence 3578888888751 2345 89999999999998765 4799999999999999988773 2577777
Q ss_pred EeCC-------CCHHHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013210 169 FVDI-------SDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---- 232 (447)
Q Consensus 169 ~v~~-------~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---- 232 (447)
.++. .|+++++++++. +++.++++++||||||.+.+ +++|+++|++||+++|+|++|..+.++.
T Consensus 146 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~ 225 (396)
T PRK09257 146 TYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDA 225 (396)
T ss_pred EEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHH
Confidence 6653 178899888732 34567777999999999986 6688899999999999999997665421
Q ss_pred ------cC-CCCeEEEeCCCccccCCCCeeEEEEE--c-ChHHHH----HHHHHhhhhhhhcCCCccHHHHHHHHccC--
Q 013210 233 ------AR-LGADVVVHSISKFISGGADIIAGAVC--G-PANLVN----SMMDLHQGALMLLGPTMNPKVAFELSERI-- 296 (447)
Q Consensus 233 ------~~-~g~di~~~S~sK~~g~~g~~igG~l~--~-~~~~~~----~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-- 296 (447)
.. ....+++.||||.++++|+|+ ||++ . +++.+. .+..... ......+...+..+...+..-
T Consensus 226 ~~~~~~~~~~~~vi~i~SfSK~~~~~GlRi-G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~ 303 (396)
T PRK09257 226 YGLRAFAAAGLELLVASSFSKNFGLYGERV-GALSVVAEDAEEADRVLSQLKATIR-TNYSNPPAHGAAIVATILNDPEL 303 (396)
T ss_pred HHHHHHHhcCCcEEEEEEcCCcCccccccc-eeEEEEeCCHHHHHHHHHHHHHHhh-hhcCCCcHHHHHHHHHHhCCHHH
Confidence 11 135799999999999999999 9986 2 444333 3322222 100111223333333333321
Q ss_pred -----CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 297 -----PHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 297 -----~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
+++....++++++++.+.+.|++++
T Consensus 304 ~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~ 333 (396)
T PRK09257 304 RAEWEAELEEMRERIKAMRQLLVEALKAKG 333 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2233456678899999999998874
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-23 Score=201.69 Aligned_cols=246 Identities=15% Similarity=0.124 Sum_probs=180.4
Q ss_pred CCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--e--EEEeCChHHHHHHHHHHh--cCCCCeEEEe
Q 013210 71 MEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--A--AYCTASGMSAISSVLMQL--CSSGGHVVAA 144 (447)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~--~~~tsggt~A~~~al~~l--~~~gd~Vi~~ 144 (447)
...+++.......+|||++.+.|++......+++.+.+|+++|++ . .+||+||||||..++... ..++++|+++
T Consensus 37 ~~~~~~~~~~~~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s 116 (380)
T PRK02769 37 SALKRFFSFSINNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYS 116 (380)
T ss_pred HHHHHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeC
Confidence 345677777777789999999999988888889999999999974 3 489999999998887654 2467899999
Q ss_pred CCCchhHHHHHHhhcCcccCeeEEEeCC--C---CHHHHHHhhccCC---ceEEEEEcCCCCCccccCHHHHHHHHHhcC
Q 013210 145 RTLYGGTHALLTHFFPRACNITTTFVDI--S---DHEMVNSAIVQGR---TKVLYFESISNPTLAVANIPELSRLAHDKG 216 (447)
Q Consensus 145 ~~~y~~~~~~~~~~~~~~~g~~~~~v~~--~---d~~~l~~~i~~~~---t~lV~i~~~~NptG~v~~l~~I~~la~~~g 216 (447)
+.+|+++...+. .+ |++...++. + |+++|++++ +++ |.+|+++.++|++|.+.|+++|+++|+++|
T Consensus 117 ~~~H~Sv~ka~~-~l----g~~~~~V~~~~~g~id~~~L~~~i-~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g 190 (380)
T PRK02769 117 KDTHYSVSKIAR-LL----RIKSRVITSLPNGEIDYDDLISKI-KENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIG 190 (380)
T ss_pred CCceehHHHHHH-Hc----CCCCceeccCCCCcCcHHHHHHHH-HhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhC
Confidence 999999988873 32 333333332 2 899999999 544 899999999999999999999999999998
Q ss_pred ---CEEEEeCCCCCCC---------CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh----hhhhhc
Q 013210 217 ---VTVVVDNTFSPLV---------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ----GALMLL 280 (447)
Q Consensus 217 ---i~livD~~~~~~~---------~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~----~~~~~~ 280 (447)
+++|+|.+|+.+. ++... ++|.++.|.||++++|-. + |+++.+++..+.+..... ......
T Consensus 191 ~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g-~-G~l~~r~~~~~~~~~~~~yl~~~d~t~~ 267 (380)
T PRK02769 191 IDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMP-C-GIVLAKKKYVERISVDVDYIGSRDQTIS 267 (380)
T ss_pred CCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCC-c-EEEEEehhhhhhcccCccccCCCCCCcc
Confidence 6999999994432 22233 899999999999984433 4 777777666555421101 001123
Q ss_pred CCCc--cHHHHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013210 281 GPTM--NPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVL 325 (447)
Q Consensus 281 g~~~--~~~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~ 325 (447)
|+.. .....+..++.+ ..+.+..++..++++++.+.|++.+.++.
T Consensus 268 GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~ 316 (380)
T PRK02769 268 GSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAW 316 (380)
T ss_pred CCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3332 233444444433 33566778889999999999988877544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=217.65 Aligned_cols=217 Identities=15% Similarity=0.148 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHhCC--C---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 101 VLNLSRQMAALEGT--E---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 101 ~~~l~~~ia~l~g~--~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
.+.+.+.+++..|. + .+++++|+++++..++++++++||.|+++.|+|+.+...+. ..|.++..++.+
T Consensus 736 r~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~-----~~Ga~vv~Vpl~~e 810 (1082)
T PLN02672 736 RPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAK-----FLKANFRRIPTKSS 810 (1082)
T ss_pred HHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEEecccc
Confidence 56788888887664 2 58999999999999999999999999999999999988873 357777777653
Q ss_pred -----CHHHHHHhhccC-CceEEEEEcCC-CCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc----------
Q 013210 174 -----DHEMVNSAIVQG-RTKVLYFESIS-NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA---------- 233 (447)
Q Consensus 174 -----d~~~l~~~i~~~-~t~lV~i~~~~-NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~---------- 233 (447)
|+++|++++ ++ +.++|++++|| ||||.+.+ +++|+++|++||++||+||+|..+.++..
T Consensus 811 ~gf~lD~d~Le~al-~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~ 889 (1082)
T PLN02672 811 DGFKLTAKTLASTL-ETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSI 889 (1082)
T ss_pred cCCCCCHHHHHHHh-ccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhH
Confidence 678899988 44 45689999997 99999986 66888889999999999999975554311
Q ss_pred --CC------CCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhhhhcCCCccHHHHHHHHc-----cC---
Q 013210 234 --RL------GADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSE-----RI--- 296 (447)
Q Consensus 234 --~~------g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-----~~--- 296 (447)
.+ ...+++.|+||.++.+|+|+ ||+++++ ++++.+..... . .......+.++..++. ..
T Consensus 890 l~~~~~~sks~nVIvL~SfSKkf~lpGLRI-GylIap~~eLi~~l~~~~~-~--s~~~~~~q~Aaaaalall~~~~~~~~ 965 (1082)
T PLN02672 890 LSRLKSSNPSFAVALLGGLSTELLSGGHEF-GFLALNDSVLIDAFHSAPG-L--SRPHSTLKYTIKKLLGLKNQKSSDLL 965 (1082)
T ss_pred HHHhccccCCceEEEEeCcHHhhccHHHHh-eeEEeCCHHHHHHHHHhhh-h--cCCCcHHHHHHHHHHHHHhccCcHHH
Confidence 01 14688999999999999999 9999864 58888876533 1 1122223333322221 11
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013210 297 PHLGLRMKEHCHRALIFARRMKKLGLKVLYP 327 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p 327 (447)
+.+.+..+.+.++++++.+.|++++..+..|
T Consensus 966 ~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~~P 996 (1082)
T PLN02672 966 DGVAEQKKILKSRAERLKETLEACGWDVLEP 996 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCeEecC
Confidence 1234455668899999999999887665544
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-23 Score=205.23 Aligned_cols=286 Identities=13% Similarity=0.173 Sum_probs=192.9
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC---------CC-CeEEEeCCCchhHHHHHHhhcC-----c
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS---------SG-GHVVAARTLYGGTHALLTHFFP-----R 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~---------~g-d~Vi~~~~~y~~~~~~~~~~~~-----~ 161 (447)
.++...+++++++++.+.+.++|++||++|+..+++.... +| ++||.....||+.......... .
T Consensus 80 ~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~ 159 (396)
T PRK04073 80 HSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKR 159 (396)
T ss_pred CCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCccccc
Confidence 4566688999999999888999999999999999986531 34 6789888888875432211110 0
Q ss_pred ccC---eeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC---
Q 013210 162 ACN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS--- 231 (447)
Q Consensus 162 ~~g---~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~--- 231 (447)
..+ ..+..++..|++++++.+ ++++++|++++++||+|.+.| +++|.++|++||+++|+||+|+++...
T Consensus 160 ~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~ 238 (396)
T PRK04073 160 GFGPMLPGIKKIPYGDLEALKAAI-TPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKL 238 (396)
T ss_pred CCCCCCCCceEeCCCCHHHHHHhc-ccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHH
Confidence 000 124556777999999999 778999999999999999976 889999999999999999999655321
Q ss_pred ----ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHH
Q 013210 232 ----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHC 307 (447)
Q Consensus 232 ----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~ 307 (447)
......|+++ ++|.+|++|.++ |++++++++++.+..... ..+..++...+.++.+.+..++. ....++..
T Consensus 239 ~~~~~~~~~pdi~~--~sK~lg~gg~~i-g~~~~~~~i~~~~~~~~~-~~t~~~~~~~~aaa~aaL~~~~~-~~l~~~~~ 313 (396)
T PRK04073 239 FACDWDNVTPDMYI--LGKALGGGVFPI-SCVAANRDILGVFTPGSH-GSTFGGNPLACAVSIAALEVLEE-EKLPERSL 313 (396)
T ss_pred HHhhhcCCCCCEEE--ecccccCCCCcc-eEEEEcHHHHhhhcCCCC-CCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHH
Confidence 1222356554 789999888998 899999999887754322 12233444444444444432211 12335566
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccc
Q 013210 308 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 308 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++++++.+.|++++. +.+... .+.|.++.+.++. .+..+.+.|... |+ .+.
T Consensus 314 ~~~~~l~~~L~~l~~----~~i~~~-------------~~~g~~~~~~~~~--~~~~~~~~l~~~---Gv-~~~------ 364 (396)
T PRK04073 314 ELGEYFKEQLKEIDN----PMIKEV-------------RGRGLFIGVELNE--PARPYCEALKEE---GL-LCK------ 364 (396)
T ss_pred HHHHHHHHHHHhhcC----Ccccce-------------ecceEEEEEEecc--hHHHHHHHHHHC---Ce-EEe------
Confidence 778888888887532 111111 1467789998864 245677777652 32 211
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+ ..++.|||++. ...+++.++.+.++|+++
T Consensus 365 ----~-----------------~~~~~iRi~p~-l~~t~e~i~~~~~~l~~~ 394 (396)
T PRK04073 365 ----E-----------------THETVIRFAPP-LVITKEELDWAFEKIKAV 394 (396)
T ss_pred ----c-----------------CCCCEEEEECC-cccCHHHHHHHHHHHHHH
Confidence 0 01368999987 667777777777777653
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=197.20 Aligned_cols=276 Identities=17% Similarity=0.186 Sum_probs=183.0
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.++...+|++.||+++|.+.+++++||++++..++.+++.+||+|+++.+.|...+... .. ....+.++..++.+
T Consensus 32 ~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 109 (333)
T PRK10534 32 DDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEAG-GA-AVLGSIQPQPIDAAADG 109 (333)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcCC-ch-HHhcCceEEeecCCCCC
Confidence 57888999999999999999999999999999999888999999999888775333211 00 01012455555432
Q ss_pred --CHHHHHHhhccC------CceEEEEEcCCCCCccccCHH---HHHHHHHhcCCEEEEeCCCCCC-----CCCccC--C
Q 013210 174 --DHEMVNSAIVQG------RTKVLYFESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPL-----VLSPAR--L 235 (447)
Q Consensus 174 --d~~~l~~~i~~~------~t~lV~i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~-----~~~~~~--~ 235 (447)
|+++|++++ ++ ++++|++++|+ +|.+.|.+ +|.++|+++++++++||+|... ...... .
T Consensus 110 ~~d~~~l~~~i-~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~ 186 (333)
T PRK10534 110 TLPLDKVAAKI-KPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQ 186 (333)
T ss_pred CCCHHHHHHhh-cccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHh
Confidence 799999988 54 68999999765 59998865 5567889999999999986311 111111 1
Q ss_pred CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCcc--HHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013210 236 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN--PKVAFELSERIPHLGLRMKEHCHRALIF 313 (447)
Q Consensus 236 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~--~~~a~~~~~~~~~l~~~~~~~~~~~~~l 313 (447)
..|.++.|+||.+|.+ +||++++++++++.++..+. ..+.... ...+......++...+++++..++++++
T Consensus 187 ~~~~~~~s~SK~~~~~---~G~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l 259 (333)
T PRK10534 187 YCDSFTICLSKGLGTP---VGSLLVGNRDYIKRARRWRK----MTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWL 259 (333)
T ss_pred cCCEEEEEeEcCCCCc---ccceEEcCHHHHHHHHHHHH----HhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2466667999999864 55588899999999987765 2232221 1112222222333334555666678899
Q ss_pred HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccc
Q 013210 314 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 393 (447)
Q Consensus 314 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a 393 (447)
.+.|++.++++..| .+.++++.+++. ....+.+.|... | +.+..|
T Consensus 260 ~~~L~~~g~~~~~~--------------------~~nfv~~~~~~~-~~~~~~~~l~~~---g-i~v~~~---------- 304 (333)
T PRK10534 260 AEQLREAGADVMRQ--------------------DTNMLFVRVGEE-QAAALGEYMRER---N-VLINAS---------- 304 (333)
T ss_pred HHHHHhCCCccCCC--------------------CceEEEEECCch-hHHHHHHHHHHc---C-eeecCC----------
Confidence 99999887654322 244888888642 345666777653 3 333222
Q ss_pred cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 394 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 394 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..+|++.. .-.+.+.++.+.++|+++
T Consensus 305 -------------------~~~rl~~~-~r~t~e~~~~~~~~l~~~ 330 (333)
T PRK10534 305 -------------------PIVRLVTH-LDVSREQLAEVVAHWRAF 330 (333)
T ss_pred -------------------ceEEEEEE-eCCCHHHHHHHHHHHHHH
Confidence 13677765 444566677777776644
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=205.34 Aligned_cols=144 Identities=13% Similarity=0.212 Sum_probs=116.8
Q ss_pred eEEEeCChHHHHHHHHHH-----hcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC------------CHHHH
Q 013210 116 AAYCTASGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------------DHEMV 178 (447)
Q Consensus 116 ~~~~tsggt~A~~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~------------d~~~l 178 (447)
++++|+|+++|+..++.+ ++.+||+|++..|.|+.+...+. .. . .|.+++.++.+ |.+++
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~-l~-~-~g~~vv~i~~~~~~~~g~~~~~~d~~~l 233 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE-LP-R-YDFEVVRIKADEMTEDGTHTWQYPDKEL 233 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH-Hh-c-CCcEEEEeecccccccccccCCCCHHHH
Confidence 699999999999999877 68899999999999999887752 11 1 36666655431 56889
Q ss_pred HHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhc--CCEEEEeCCCCCCCCCcc---CC--CCeEEEeCCCccc
Q 013210 179 NSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDK--GVTVVVDNTFSPLVLSPA---RL--GADVVVHSISKFI 248 (447)
Q Consensus 179 ~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~--gi~livD~~~~~~~~~~~---~~--g~di~~~S~sK~~ 248 (447)
++++ ++++++|++++|+||||.+.+ +++|+++|++| ++++|+||+|..+..+.. .. ...+++.|+||.|
T Consensus 234 ~~~~-~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~f 312 (521)
T TIGR03801 234 EKLR-DPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYF 312 (521)
T ss_pred HHhc-CCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhc
Confidence 8877 789999999999999999987 67788889886 999999999965543211 11 3679999999999
Q ss_pred cCCCCeeEEEEEcChH
Q 013210 249 SGGADIIAGAVCGPAN 264 (447)
Q Consensus 249 g~~g~~igG~l~~~~~ 264 (447)
|.+|+|+ ||++.+++
T Consensus 313 g~~G~Rl-G~i~~~~~ 327 (521)
T TIGR03801 313 GATGWRL-GTIALHKD 327 (521)
T ss_pred cCchhhh-hhhhcCch
Confidence 9999999 99988754
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=202.32 Aligned_cols=349 Identities=16% Similarity=0.151 Sum_probs=212.1
Q ss_pred CCCCchhhHhhhcCCCCCCCCccccccccccccccCCH-HHHHHhhcCCCCCCCCCccccCC--CCchHHHHHH----HH
Q 013210 36 AAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRH--FNPTVLNLSR----QM 108 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~l~~----~i 108 (447)
++..||+..-+--..... ..-.-++..|.+++.|.+ +.+...+...|+. ++.++|. +++.++++|+ ++
T Consensus 9 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~sen~~~p~v~~a~~~~~~~~~~~---g~~gsr~~~G~~~~~~lE~~~~~~l 83 (416)
T PRK13034 9 LEEYDDEVFAAINKELER--QQDHLELIASENFTSPAVMEAQGSVLTNKYAE---GYPGKRYYGGCEFVDEVEALAIERA 83 (416)
T ss_pred HhhhCHHHHHHHHHHHHH--HhcCeeecccccCCCHHHHHHhcchhhcCCCC---CCCCCcccCCChHHHHHHHHHHHHH
Confidence 555667554332221211 123446688888988877 6666665455543 2233343 4688899999 99
Q ss_pred HHHhCCCeEE-EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCe--eEEEeCC------CCHHHHH
Q 013210 109 AALEGTEAAY-CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFVDI------SDHEMVN 179 (447)
Q Consensus 109 a~l~g~~~~~-~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~~~~v~~------~d~~~l~ 179 (447)
|+++|.+.++ +++||+.|+..++.+++++||+|+++...|.+.... ...+...+. +...++. .|+++++
T Consensus 84 a~l~g~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 161 (416)
T PRK13034 84 KQLFGCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTH--GAKVSLSGKWYNAVQYGVDRLTGLIDYDEVE 161 (416)
T ss_pred HHHhCCCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeec--CCcceeccceeeeEEcccccccCCcCHHHHH
Confidence 9999999885 569999999999999999999999999998773211 000000111 1123333 4889999
Q ss_pred HhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCC-----CccCCCCeEEEeCCCccccCCCC
Q 013210 180 SAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL-----SPARLGADVVVHSISKFISGGAD 253 (447)
Q Consensus 180 ~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~-----~~~~~g~di~~~S~sK~~g~~g~ 253 (447)
+.++..++++|+++.+. .|...|+++|.++|+++|+++++|++| .+... .+.. ++|++++|+||+++++.
T Consensus 162 ~~l~~~~~klVi~~~~~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~~- 237 (416)
T PRK13034 162 ELAKEHKPKLIIAGFSA--YPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFP-HAHVVTTTTHKTLRGPR- 237 (416)
T ss_pred HHHhhcCCeEEEECCCc--cccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCC-CceEEEEeCcccCCCCC-
Confidence 88844568899886543 578889999999999999999999997 22221 1222 58999999999996553
Q ss_pred eeEEEEEcCh-HHHHHHHHHhhhhhhhcCCCccHHHHHH--HHccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC
Q 013210 254 IIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFE--LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGL 329 (447)
Q Consensus 254 ~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~--~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~ 329 (447)
||++++++ ++.+.++...... ...+..+...++.. +...+ ....++.+++.++.++|++.|++.|+.+..+.
T Consensus 238 --GG~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~- 313 (416)
T PRK13034 238 --GGMILTNDEEIAKKINSAVFPG-LQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGG- 313 (416)
T ss_pred --CeEEEECcHHHHHHHHhhcCCc-ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEeccCC-
Confidence 57776654 4445554432211 01112222222211 12122 12334568889999999999998887665331
Q ss_pred CCCchhHHHHHHhccCCCcCcEEEEEeCCHH-HHHHHHHHhhcccccccccccc-cCccccccccccccCCCCCHHHHHh
Q 013210 330 EDHPHHELLKSMANKEYGFGGLLCLDMETEE-KANRLMNYLQNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKAL 407 (447)
Q Consensus 330 ~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~-~~~~l~~~l~~~~~~g~~~vs~-G~~~s~~~~~a~~~~~~~~~~~~~~ 407 (447)
.. ..++.+.+.... ....+.+.|... | +.++. +.. ..+.+|.
T Consensus 314 ~~-----------------t~i~~v~~~~~~~~~~~~~~~L~~~---G-I~v~~~~~p-~~~~~p~-------------- 357 (416)
T PRK13034 314 TD-----------------NHLLLVDLRPKGLSGKDAEQALERA---G-ITVNKNTVP-GDTESPF-------------- 357 (416)
T ss_pred CC-----------------CcEEEEEcCCCCCCHHHHHHHHHhC---C-cEEeccCCC-CCCcCCC--------------
Confidence 11 227777776322 234455666642 3 22221 100 0000111
Q ss_pred cCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHHh
Q 013210 408 AGISAGLVRMSVGYL----GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 408 ~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~~ 439 (447)
+ +..||+|+. . ..++++++.+.++|+++
T Consensus 358 --~-~~~lR~~~~-~~t~~~~~~~di~~l~~~l~~~ 389 (416)
T PRK13034 358 --V-TSGIRIGTP-AGTTRGFGEAEFREIANWILDV 389 (416)
T ss_pred --C-CCeeEeCcH-HHHhCCCCHHHHHHHHHHHHHH
Confidence 1 456999988 6 44567777777776654
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=194.85 Aligned_cols=206 Identities=17% Similarity=0.152 Sum_probs=147.6
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEe---CCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAA---RTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~---~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+..+++++.+|+++|. +.+++|+||++||..++.+++++||+|+++ .|.|..+...+. ..|.++. ..
T Consensus 53 ~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~-----l~ga~~~--~~ 125 (346)
T TIGR03576 53 AIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCK-----LAGAEYF--ES 125 (346)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHH-----HcCCEEe--cc
Confidence 36678999999999998 889999999999999999999999999975 467777666552 2566653 33
Q ss_pred CCHHHHHHhhccCCceEEEEEcCCCCCccc---cCHHHHHHHHHhcCCEEEEeCCCCCCC---CC---ccCCCCeEEEeC
Q 013210 173 SDHEMVNSAIVQGRTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLV---LS---PARLGADVVVHS 243 (447)
Q Consensus 173 ~d~~~l~~~i~~~~t~lV~i~~~~NptG~v---~~l~~I~~la~~~gi~livD~~~~~~~---~~---~~~~g~di~~~S 243 (447)
.++++++. .+++++|+++. +|++|.+ .|+++|+++|+++|+++++||+|+.+. +. ....++|+++.|
T Consensus 126 ~~l~~l~~---~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s 201 (346)
T TIGR03576 126 DELSELKK---IDGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTS 201 (346)
T ss_pred CCHHHHhh---CcCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEec
Confidence 56766533 24688888854 6899999 579999999999999999999995432 11 123467999999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 319 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 319 (447)
+||++ +|.|+ ||+++++++++.+........ ...+++.+.++..++.... .....+.++++++.+.+.++.
T Consensus 202 ~SKal--aG~r~-G~v~~~~~li~~l~~~~~~~~-~s~~~~~~~aa~~aL~~~~-~~~~~~~l~~r~~~~~~~l~~ 272 (346)
T TIGR03576 202 TDKLM--DGPRG-GLLAGRKELVDKIKSVGEQFG-LEAQAPLLAAVVRALEEFE-LSRIRDAFKRKEEVYLRLFDK 272 (346)
T ss_pred cchhc--cccce-EEEEeCHHHHHHHHHhhcCcc-cCccHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHh
Confidence 99954 45675 999999999999987765321 1122333333333343322 233445667777777777764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=202.34 Aligned_cols=284 Identities=18% Similarity=0.201 Sum_probs=180.7
Q ss_pred ccccccccccCCH-HHHHHhhcCCC--CCCCCCccccCCCCchHHH-HHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhc
Q 013210 61 SIEASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVLN-LSRQMAALEGTEAA-YCTASGMSAISSVLMQLC 135 (447)
Q Consensus 61 pi~~att~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~-l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~ 135 (447)
.+..+.+++.+++ +++...+...+ +++++.|..+......+++ +++.+++++|++.. ++++||++|+..++.+++
T Consensus 29 ~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~ 108 (416)
T PRK00011 29 ELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVYFALL 108 (416)
T ss_pred eeecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHHHHHhc
Confidence 3344555554555 55544443333 3444444334322233333 45589999998764 555678999999999999
Q ss_pred CCCCeEEEeCCCchhHHHHHHh-hcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHH
Q 013210 136 SSGGHVVAARTLYGGTHALLTH-FFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 208 (447)
Q Consensus 136 ~~gd~Vi~~~~~y~~~~~~~~~-~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I 208 (447)
++||+|+++.++|+++...... .... .|.++.+++.+ |+++++++++..++++|+++.++ +|...|+++|
T Consensus 109 ~~gd~Vl~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~--~~~~~~~~~I 185 (416)
T PRK00011 109 KPGDTILGMDLAHGGHLTHGSPVNFSG-KLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASA--YSRPIDFKRF 185 (416)
T ss_pred CCCCEEEEeccccCCcccccccccccc-ceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCc--CCCccCHHHH
Confidence 9999999999999865432211 1112 45677666542 79999999843478999886544 4577899999
Q ss_pred HHHHHhcCCEEEEeCCC-CCCCC-----CccCCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcC
Q 013210 209 SRLAHDKGVTVVVDNTF-SPLVL-----SPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLG 281 (447)
Q Consensus 209 ~~la~~~gi~livD~~~-~~~~~-----~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g 281 (447)
.++|+++|+++|+|++| .+... .+.. ++|+++.|+||++++ .+ ||+++.+ +++++.++...... ..+
T Consensus 186 ~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l~g--~~-gg~i~~~~~~~~~~l~~~~~~~--~~~ 259 (416)
T PRK00011 186 REIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTLRG--PR-GGLILTNDEELAKKINSAVFPG--IQG 259 (416)
T ss_pred HHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCCCC--CC-ceEEEeCCHHHHHHHHHHhCcc--ccC
Confidence 99999999999999997 33221 2233 689999999998853 34 4888775 68888887654421 112
Q ss_pred CCcc-HHHHH-HHH-ccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 282 PTMN-PKVAF-ELS-ERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 282 ~~~~-~~~a~-~~~-~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+... ..++. .+. ..+ +.+.++.+++.++++++.+.|++.++++. +. . ..+.++++.++
T Consensus 260 ~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~--~---------------~~~~~~~i~~~ 321 (416)
T PRK00011 260 GPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVV-SG--G---------------TDNHLVLVDLR 321 (416)
T ss_pred CccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeee-ec--C---------------CCCeEEEEeCc
Confidence 2222 22221 111 111 23566788899999999999998876553 11 0 01248888885
Q ss_pred CHH-HHHHHHHHhhc
Q 013210 358 TEE-KANRLMNYLQN 371 (447)
Q Consensus 358 ~~~-~~~~l~~~l~~ 371 (447)
+.. ....+.+.|..
T Consensus 322 ~~~~~~~~~~~~L~~ 336 (416)
T PRK00011 322 SKGLTGKEAEAALEE 336 (416)
T ss_pred ccCCCHHHHHHHHHH
Confidence 221 23556666664
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=205.19 Aligned_cols=292 Identities=15% Similarity=0.198 Sum_probs=194.5
Q ss_pred CCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCc--------ccC
Q 013210 97 FNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR--------ACN 164 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~--------~~g 164 (447)
..+...++++.++++++ .+.++|++||++|+..+++.+. .++++|++.++.|++........... ...
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T cd00610 77 YNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLL 156 (413)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence 45677899999999998 7889999999999999998763 56899999999999876544221110 012
Q ss_pred eeEEEeCCC-----------CHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCC
Q 013210 165 ITTTFVDIS-----------DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSP 227 (447)
Q Consensus 165 ~~~~~v~~~-----------d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~ 227 (447)
.++..++.+ |+++|++.+++ .++++|++++++|++|.+.+ +++|.++|++||+++|+||+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g 236 (413)
T cd00610 157 PGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTG 236 (413)
T ss_pred CCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 245566665 78899998843 36789999999999999887 99999999999999999999965
Q ss_pred CCCC-----ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHH--HHHhhhhhhhcCCCccHHHHHHHHccCCcHH
Q 013210 228 LVLS-----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM--MDLHQGALMLLGPTMNPKVAFELSERIPHLG 300 (447)
Q Consensus 228 ~~~~-----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l--~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~ 300 (447)
+... ....+.+.-+.|++|++++ |.++ |++++++++++.+ ..... ..+..++...+.++...+..++. .
T Consensus 237 ~g~~g~~~~~~~~~~~~d~~t~sK~l~~-g~~~-g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~a~~a~l~~l~~-~ 312 (413)
T cd00610 237 FGRTGKMFAFEHFGVEPDIVTLGKGLGG-GLPL-GAVLGREEIMDAFPAGPGLH-GGTFGGNPLACAAALAVLEVLEE-E 312 (413)
T ss_pred CCcCcchhhHhhcCCCCCeEEEcccccC-cccc-EEEEEcHHHHHhhccCCCCC-CCCCCcCHHHHHHHHHHHHHHHh-c
Confidence 5211 1112322224468899997 7888 8888898888876 22111 11122333333333333332222 2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------HHHHHHHHHhhcc
Q 013210 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRLMNYLQNY 372 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------~~~~~l~~~l~~~ 372 (447)
...+++.++.+++.+.|++.... .+. .. ...+.|+++++.+... .....+...|...
T Consensus 313 ~~~~~~~~~~~~l~~~l~~~~~~--~~~-~~------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 377 (413)
T cd00610 313 GLLENAAELGEYLRERLRELAEK--HPL-VG------------DVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALER 377 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhh--CCc-EE------------EeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHC
Confidence 35567778888888888765321 010 00 0014678999998743 3456677777652
Q ss_pred cccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 373 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 373 ~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
| +.++.+ ..+.+|++++ ...+++.++.+.++|+++
T Consensus 378 ---g-v~v~~~---------------------------~~~~lR~~~~-~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 378 ---G-LLLRPS---------------------------GGNVIRLLPP-LIITEEEIDEGLDALDEA 412 (413)
T ss_pred ---C-eEEeec---------------------------CCCEEEEECC-CcCCHHHHHHHHHHHHHh
Confidence 3 232222 0367999999 877888888887777653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=197.96 Aligned_cols=286 Identities=15% Similarity=0.198 Sum_probs=192.0
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc---C----CCCeEEEeCCCchhHHHHHHhhcCc-------
Q 013210 96 HFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC---S----SGGHVVAARTLYGGTHALLTHFFPR------- 161 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~---~----~gd~Vi~~~~~y~~~~~~~~~~~~~------- 161 (447)
+..+...++++++++++|.+.+++++||++|+..+++.+. . ++++|+++.+.|+++..........
T Consensus 66 ~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~ 145 (379)
T TIGR00707 66 YYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGF 145 (379)
T ss_pred cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccC
Confidence 3567789999999999999999999999999999998652 2 3799999999998765444211110
Q ss_pred -ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013210 162 -ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLSP---- 232 (447)
Q Consensus 162 -~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~~---- 232 (447)
....++.+++.+|++++++.+ ++++++|++++++|++|... ++++|.++|+++|+++|+||+|.++....
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~ 224 (379)
T TIGR00707 146 EPLVPGFSYAPYNDIESLKKAI-DDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFA 224 (379)
T ss_pred CCCCCCceeeCCCCHHHHHHHh-hhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhh
Confidence 011234455556899999998 67899999988888888653 38899999999999999999996553321
Q ss_pred ---cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHH
Q 013210 233 ---ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 309 (447)
Q Consensus 233 ---~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~ 309 (447)
.....|++ ++||.++ +|.|+ ||+++++++++.+....... ...++.+.+.++..++..++. ....++++++
T Consensus 225 ~~~~~~~~d~~--t~sK~~~-~G~ri-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~aa~aaL~~~~~-~~~~~~~~~~ 298 (379)
T TIGR00707 225 YEHYGIEPDII--TLAKGLG-GGVPI-GATLAKEEVAEAFTPGDHGS-TFGGNPLACAAALAVLEVIEK-ERLLENVKEK 298 (379)
T ss_pred HHhcCCCCCEE--EEccccc-CCccc-EEEEEcHHHHhhhcCCCCCC-CCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHH
Confidence 11234544 6899999 88998 89999998888876532211 122333333344434333221 2355677788
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
++++.+.|++.+....... .+ +.|.++++.++.. ...+.+.|... | +.+..+
T Consensus 299 ~~~~~~~l~~~~~~~~~~~---~~-------------~~g~~~~~~~~~~--~~~~~~~l~~~---G-v~v~~~------ 350 (379)
T TIGR00707 299 GDYFKERLEELGKNYPNKE---VR-------------GKGLMLGIELEAP--CKDIVKKALEK---G-LLVNCA------ 350 (379)
T ss_pred HHHHHHHHHHHHhhCCCCc---cc-------------cCceEEEEEecCc--HHHHHHHHHHC---C-cEEeeC------
Confidence 8888888876533221110 01 3466889988643 45677777652 3 232211
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
..+.+|||++ ...+++.++.+.++|++
T Consensus 351 ---------------------~~~~lRi~~~-~~~t~~~i~~~~~~l~~ 377 (379)
T TIGR00707 351 ---------------------GPKVLRFLPP-LIITKEEIDEAVSALEE 377 (379)
T ss_pred ---------------------CCCEEEEECC-CcCCHHHHHHHHHHHHH
Confidence 1367999988 65667777777776654
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=203.89 Aligned_cols=247 Identities=21% Similarity=0.219 Sum_probs=183.0
Q ss_pred ccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEE
Q 013210 65 SATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVA 143 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~ 143 (447)
+.++..+++ +.+.++++. ++|....+..+.. ......+++.+|+++|++.+++++||+.|+++++.+ +.+||+||+
T Consensus 89 g~s~l~~~vieAv~~~~~~-y~~l~~~l~~g~~-g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~-l~~GdeVIv 165 (454)
T TIGR00474 89 GRAPLAEEAIEAVTDAARG-YSNLEYDLETGKR-GSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNT-LAKGKEVIV 165 (454)
T ss_pred CCCCCCHHHHHHHHHHHhc-ccchhcccccccc-chHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHH-hCCcCEEEE
Confidence 334444444 666666654 3333211111222 344689999999999999999999999999998854 688999999
Q ss_pred eCCCc---hhHHHHHHhhcCcccCeeEEEeCC---CCHHHHHHhhccCCceEEEEEcCCCCC--c--cccCHHHHHHHHH
Q 013210 144 ARTLY---GGTHALLTHFFPRACNITTTFVDI---SDHEMVNSAIVQGRTKVLYFESISNPT--L--AVANIPELSRLAH 213 (447)
Q Consensus 144 ~~~~y---~~~~~~~~~~~~~~~g~~~~~v~~---~d~~~l~~~i~~~~t~lV~i~~~~Npt--G--~v~~l~~I~~la~ 213 (447)
+..+| ++..... ..+.+ .|+++++++. .+++++++++ +++|++|++++++|++ | .+.|+++|+++||
T Consensus 166 s~~e~v~~ggs~~i~-~~~~~-~G~~~~~v~~~~~~~l~dle~aI-~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~ 242 (454)
T TIGR00474 166 SRGELVEIGGSFRIP-DVMEQ-SGAKLVEVGTTNRTHLKDYEDAI-TENTALLLKVHTSNYRIVGFTEEVSIAELVALGR 242 (454)
T ss_pred CCChhhhhcchhhHH-HHHHH-cCCEEEEeCCCCCCCHHHHHHhc-CcCCEEEEEEccCcccccCCCCCCCHHHHHHHHH
Confidence 99875 3333332 33344 7999999986 4789999999 8899999999999985 5 5789999999999
Q ss_pred hcCCEEEEeCCCCC-------------CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH------Hhh
Q 013210 214 DKGVTVVVDNTFSP-------------LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD------LHQ 274 (447)
Q Consensus 214 ~~gi~livD~~~~~-------------~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~------~~~ 274 (447)
+||+++++|++.+- ...++.+.|+|++++|++|++|||. +|++++++++++.++. .+-
T Consensus 243 ~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~---~G~i~g~~~~i~~l~~~~l~r~lr~ 319 (454)
T TIGR00474 243 EHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ---AGIIVGKKELIERLKKNPLTRALRV 319 (454)
T ss_pred HcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe---EEEEEECHHHHHhhhhchhHHHHhh
Confidence 99999999987321 1235567799999999999999873 5999999888765432 110
Q ss_pred ------hhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 275 ------GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 275 ------~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
......+..+.+..++..+..++++..++++++++++.++++|++.
T Consensus 320 ~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~ 371 (454)
T TIGR00474 320 DKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAA 371 (454)
T ss_pred ChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhh
Confidence 1111344445566677778888888999999999999999999874
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=191.74 Aligned_cols=306 Identities=17% Similarity=0.198 Sum_probs=204.0
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+.+.++|+++|+++|++.+++|+|||+|+.+++.++ +++||+|+++.++|.++...+. ..|++++++|.+
T Consensus 32 g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~-----~~G~~~v~vd~~~~~ 106 (379)
T PRK11658 32 GPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIV-----LLGATPVMVDVDRDT 106 (379)
T ss_pred CHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHH-----HcCCEEEEEecCCCc
Confidence 5678999999999999999999999999999999998 7899999999999999877662 268889888763
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCC---ccCCCCeEEEeCCCc
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS---PARLGADVVVHSISK 246 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~---~~~~g~di~~~S~sK 246 (447)
|++++++++ +++|++|+ |+|++|.+.|+++|.++|+++|+++|+|++|+ +..+. ....|.++.+++.+|
T Consensus 107 ~~~d~~~l~~~i-~~~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K 182 (379)
T PRK11658 107 LMVTPEAIEAAI-TPRTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIK 182 (379)
T ss_pred CCcCHHHHHHhc-ccCCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCC
Confidence 789999999 77899887 56789999999999999999999999999994 33332 234466666777778
Q ss_pred cccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh------------------hcC--CCccHHHHHHHHccCCcHHHHHHH
Q 013210 247 FISGGADIIAGAVCG-PANLVNSMMDLHQGALM------------------LLG--PTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 247 ~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~------------------~~g--~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
.+.+ | . ||+++. ++++.++++..+..... ..| ..+....|+..+..++.+.+..++
T Consensus 183 ~l~~-g-~-GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~ 259 (379)
T PRK11658 183 NITC-A-E-GGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNAR 259 (379)
T ss_pred cCcc-c-C-ceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 7754 3 2 587775 57888877655431100 012 123344555555556667777788
Q ss_pred HHHHHHHHHHHHHhCCCe-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC---HHHHHHHHHHhhccccccccccc
Q 013210 306 HCHRALIFARRMKKLGLK-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~---~~~~~~l~~~l~~~~~~g~~~vs 381 (447)
.+++++++.+.|++.+.. +..|...... .-.++.+.++. ......+++.|... | |.+.
T Consensus 260 r~~~a~~~~~~L~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~r~~~~~~L~~~---g-I~~~ 321 (379)
T PRK11658 260 RREIAARYLQALADLPFQPLSLPAWPHQH--------------AWHLFIIRVDEERCGISRDALMEALKER---G-IGTG 321 (379)
T ss_pred HHHHHHHHHHHhcCCCCccCcCCCCCCce--------------eEEEEEEEECCccccCCHHHHHHHHHHC---C-CCCc
Confidence 888888888888876542 2222211000 01255566542 12356777888753 3 3322
Q ss_pred ccCccccccccccc---cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 382 LGYYETLMSCSGSS---TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 382 ~G~~~s~~~~~a~~---~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
... ..+-..|... ....++..+. +....|.+-++ ..-+++.++.+.++++++
T Consensus 322 ~~~-~~~~~~~~~~~~~~~~~~p~~~~----~~~~~l~lP~~-~~l~~~~~~~i~~~i~~~ 376 (379)
T PRK11658 322 LHF-RAAHTQKYYRERFPTLSLPNTEW----NSERICSLPLF-PDMTDADVDRVITALQQI 376 (379)
T ss_pred ccC-cCcccChhhhccCCCCCChHHHH----HHhCeEEccCC-CCCCHHHHHHHHHHHHHH
Confidence 221 1111111111 0112222222 12356777777 667777788888888765
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=197.71 Aligned_cols=273 Identities=15% Similarity=0.096 Sum_probs=186.5
Q ss_pred CCCccccCCCCchHHHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHhcC------------CC--CeEEEeCCCch
Q 013210 88 RDFFIYSRHFNPTVLNLSRQMAALEGTE----AAYCTASGMSAISSVLMQLCS------------SG--GHVVAARTLYG 149 (447)
Q Consensus 88 ~~~~~~~r~~~~~~~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l~~------------~g--d~Vi~~~~~y~ 149 (447)
...|..+.......+++.+.+++++|.+ .++||+|||+|+..++.++.. ++ +.|+++.++|.
T Consensus 27 ~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~ 106 (345)
T cd06450 27 DFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHV 106 (345)
T ss_pred CcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchh
Confidence 3334444433444455666677887875 599999999999999988642 22 37888889998
Q ss_pred hHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccC------CceEEEEEcCCCCCccccCHHHHHHHHHhcCCE
Q 013210 150 GTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPELSRLAHDKGVT 218 (447)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~------~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~ 218 (447)
++...+. ..|.+++.++.+ |+++|++++ ++ ++++|++++++||+|.+.|+++|+++|+++|++
T Consensus 107 ~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~ 180 (345)
T cd06450 107 SVEKAAA-----YLDVKVRLVPVDEDGRMDPEALEAAI-DEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLW 180 (345)
T ss_pred HHHHHHH-----HHhcCeEEeeeCCCCCcCHHHHHHHH-HHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCe
Confidence 8776663 146677776643 899999988 54 788999999999999999999999999999999
Q ss_pred EEEeCCCCCCCC--Ccc-----C-CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHH
Q 013210 219 VVVDNTFSPLVL--SPA-----R-LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF 290 (447)
Q Consensus 219 livD~~~~~~~~--~~~-----~-~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~ 290 (447)
+|+|++|+.+.. ... . .++|+++.|+||++++|. ++ |+++.+ ....+
T Consensus 181 l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~-g~-g~~~~~-----------------------~~~~~ 235 (345)
T cd06450 181 LHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPL-GC-SAVLVR-----------------------ALKLW 235 (345)
T ss_pred EEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCc-ch-HHHHHH-----------------------HHHHH
Confidence 999999943322 111 1 268999999999887543 24 665444 11111
Q ss_pred HHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC----HHHHH
Q 013210 291 ELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET----EEKAN 363 (447)
Q Consensus 291 ~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~----~~~~~ 363 (447)
..+. ....+.++.++..++++++.+.|++.+. .+..+. .++++.|.++. .....
T Consensus 236 ~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~iv~f~~~~~~~~~~~~~ 296 (345)
T cd06450 236 ATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEP-------------------NLSLVCFRLKPSVKLDELNY 296 (345)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-------------------ceeEEEEEECCcchhhHHHH
Confidence 1111 1233566778888899999999988754 443321 23488898875 23456
Q ss_pred HHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC-CHHHHHHHHHHHHHH
Q 013210 364 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQFEKALSR 438 (447)
Q Consensus 364 ~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~-~~~~~i~~l~~al~~ 438 (447)
.+.+.|... |.+.++ + .. .+ .++.+|+|++ .. ++.++++.|.++|++
T Consensus 297 ~i~~~L~~~---g~~~~~-~----------~~------------~~-~~~~lRis~~-~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 297 DLSDRLNER---GGWHVP-A----------TT------------LG-GPNVLRFVVT-NPLTTRDDADALLEDIER 344 (345)
T ss_pred HHHHHHHhc---CCEEEE-e----------eE------------EC-CeEEEEEEec-CCCCCHHHHHHHHHHHHh
Confidence 677777652 211111 1 00 00 2468999999 75 588999999988875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=197.42 Aligned_cols=305 Identities=17% Similarity=0.133 Sum_probs=197.2
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
..|+. .+...+||+.++++++.+.+++|+||++|+.+++++++++|| |+++++.|..+...+. ..|.+++++
T Consensus 72 ~~Y~~--~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~-----~~G~~~v~v 143 (460)
T PRK13238 72 EAYAG--SRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIE-----LNGATAVDL 143 (460)
T ss_pred cccCC--CCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHH-----HcCCEEEEE
Confidence 34543 445688999999999999999999999999999999999999 9999998888876652 257777666
Q ss_pred CC---------------CCHHHHHHhhcc---CCceEEEEEcCCCCCc-cccC---HHHHHHHHHhcCCEEEEeCCC-C-
Q 013210 171 DI---------------SDHEMVNSAIVQ---GRTKVLYFESISNPTL-AVAN---IPELSRLAHDKGVTVVVDNTF-S- 226 (447)
Q Consensus 171 ~~---------------~d~~~l~~~i~~---~~t~lV~i~~~~NptG-~v~~---l~~I~~la~~~gi~livD~~~-~- 226 (447)
+. .|+++|++.+.. ++|++|++++|+||+| .+.+ +++|.++|++||+++|+|+++ .
T Consensus 144 ~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e 223 (460)
T PRK13238 144 VIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAE 223 (460)
T ss_pred eccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhh
Confidence 54 378999999832 4799999999999998 7765 679999999999999999977 2
Q ss_pred CCCC--------CccC---------CCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHh---hhhhhhcCCCcc
Q 013210 227 PLVL--------SPAR---------LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLH---QGALMLLGPTMN 285 (447)
Q Consensus 227 ~~~~--------~~~~---------~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~---~~~~~~~g~~~~ 285 (447)
...+ .... ...|++++|.+|...++ +||+++.+ +++++.++... .+..+..|.+..
T Consensus 224 ~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~---~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~ 300 (460)
T PRK13238 224 NAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVN---IGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGR 300 (460)
T ss_pred hhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCc---ceeEEEcChHHHHHHhhhcccccCCcccccCcHHH
Confidence 1211 1111 13789999999986654 46888877 57888876653 122222332333
Q ss_pred HHHHHH-HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----
Q 013210 286 PKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE----- 359 (447)
Q Consensus 286 ~~~a~~-~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~----- 359 (447)
.+.|.+ .+..... ....+...+++++|.+.|++.|+.+..|. .|..+.+.+...
T Consensus 301 ~~~Ala~~l~e~~~-~~~~~~~~~~~~~l~~~L~~~G~~~~~p~-------------------Gg~~v~~d~~~~~~~~~ 360 (460)
T PRK13238 301 DMEALAVGLYEGMD-EDYLAYRIGQVEYLGEGLEEAGVPIQTPA-------------------GGHAVFVDAGKFLPHIP 360 (460)
T ss_pred HHHHHHhhHHHhhC-hHHHHHHHHHHHHHHHHHHHCCCCeEccC-------------------CceEEEEEchhcCCCCC
Confidence 223322 2221101 12333344567999999999888777654 344555555321
Q ss_pred ---HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC-CCHHHHHHHHHHH
Q 013210 360 ---EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL-GTLDQRWSQFEKA 435 (447)
Q Consensus 360 ---~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~-~~~~~~i~~l~~a 435 (447)
-....|...|-. +.|+.++..|.. .. ......... .--+..++||.+- . .=+++.++.+.++
T Consensus 361 ~~~~~~~~~a~~L~~--e~GV~~~~~~~f-~~--~~~~~~~~~--------~~~~~~~~Rla~~-rr~~~~~~~~~~~~~ 426 (460)
T PRK13238 361 AEQFPAQALACELYL--EAGIRGVEIGSL-LL--GRDPKTGEQ--------LPAPAELLRLAIP-RRVYTQSHMDYVAEA 426 (460)
T ss_pred CCCCchHHHHHHHHH--HcCeeeecccce-ec--ccCCCCccc--------cCCccceEEEecc-cccCCHHHHHHHHHH
Confidence 013556666654 245433333321 11 010000000 0012478999999 5 3356667777777
Q ss_pred HHHhh
Q 013210 436 LSRMQ 440 (447)
Q Consensus 436 l~~~~ 440 (447)
|.++.
T Consensus 427 l~~~~ 431 (460)
T PRK13238 427 LKAVK 431 (460)
T ss_pred HHHHH
Confidence 77664
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=193.39 Aligned_cols=291 Identities=18% Similarity=0.280 Sum_probs=200.8
Q ss_pred CCCchHHHHHHHHHHHhC-CCeEEEeCChHHHHHHHHHHhcCC-----CCeEEEeCCCchhHH-HHH----H-----hhc
Q 013210 96 HFNPTVLNLSRQMAALEG-TEAAYCTASGMSAISSVLMQLCSS-----GGHVVAARTLYGGTH-ALL----T-----HFF 159 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g-~~~~~~tsggt~A~~~al~~l~~~-----gd~Vi~~~~~y~~~~-~~~----~-----~~~ 159 (447)
+.++...++.++|+++.+ .+.++|+|||+||+..|++...+- ..+||.....||+-. ..+ + .+.
T Consensus 81 ~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~ 160 (404)
T COG4992 81 FYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFG 160 (404)
T ss_pred cCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCC
Confidence 456777899999999996 899999999999999999865321 248999888887632 222 1 122
Q ss_pred CcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc---
Q 013210 160 PRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP--- 232 (447)
Q Consensus 160 ~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~--- 232 (447)
|. --.++++|.+|++++++++ +++|.+|++|.++.+.|.+.+ ++++.++|++||+++|.||+|+++....
T Consensus 161 Pl--~~g~~~vpfnDi~al~~ai-~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~f 237 (404)
T COG4992 161 PL--LPGFRHVPFNDIEALEAAI-DEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLF 237 (404)
T ss_pred CC--CCCceecCCCCHHHHHHHh-ccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHH
Confidence 22 1246778888999999999 779999999999999999975 8899999999999999999997775321
Q ss_pred --cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHH
Q 013210 233 --ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRA 310 (447)
Q Consensus 233 --~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~ 310 (447)
...|+...+.++.|.+|+ |.+| |+++.++.+.+.+....+ ..++.|++++..++.+.+..+.. +...++.++..
T Consensus 238 A~e~~gV~PDI~tlaK~LgG-G~Pi-gA~la~~~~~~~~~~G~H-gSTfGGNpLacAv~~a~l~~l~~-e~ll~~v~~~g 313 (404)
T COG4992 238 AYEHYGVEPDILTLAKALGG-GFPI-GAMLATEEIASAFTPGDH-GSTFGGNPLACAVALAVLEVLLE-EGLLENVREKG 313 (404)
T ss_pred HHHHhCCCCCEEEeeccccC-Cccc-eeeEEchhhhhcCCCCcc-cCCCCcCHHHHHHHHHHHHHHcc-hhHHHHHHHHH
Confidence 222444444449999995 5889 666666555555554444 34566666666555555544322 23445566777
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
++|.+.|+++..+ +|-+. +..|.|.++.+++.....+..+++.+.. .|++....|
T Consensus 314 ~~~~~~L~~l~~~--~~~v~-------------~vRG~GLmiGiel~~~~~a~~~~~~~~~---~gvL~~~a~------- 368 (404)
T COG4992 314 EYLLQRLRELKRR--YPLVK-------------EVRGRGLMIGIELKEPYRARDIVRALRE---EGVLVLPAG------- 368 (404)
T ss_pred HHHHHHHHHHhhc--CCcee-------------eeecceeEEEEEecCcccHHHHHHHHHH---CCeEEecCC-------
Confidence 7788888765321 11111 2337899999999854346778888875 344443333
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHHhh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~~~ 440 (447)
++.|||... . +++++.++.|+++|+...
T Consensus 369 ---------------------~~ViR~~Pp-L~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 369 ---------------------PNVIRFLPP-LVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred ---------------------CCeEEecCC-ccCCHHHHHHHHHHHHHHHHHhh
Confidence 356888777 4 566666666777766543
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=193.59 Aligned_cols=221 Identities=12% Similarity=0.099 Sum_probs=146.7
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCC--------eE--EEeCChH--HHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhh
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGTE--------AA--YCTASGM--SAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF 158 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~~--------~~--~~tsggt--~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~ 158 (447)
+.|+.. .-..+||+.+++++... .+ ..+.+|+ .++..++..++.+||+|++++|.|+.+...+.
T Consensus 85 ~~Y~~~--~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~-- 160 (423)
T PLN02397 85 KEYLPI--EGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFR-- 160 (423)
T ss_pred CCCCCc--CCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH--
Confidence 345532 23357888899876321 23 1133333 34555555566799999999999999988773
Q ss_pred cCcccCeeEEEeCC-------CCHHHHHHhhc--cCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCC
Q 013210 159 FPRACNITTTFVDI-------SDHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 159 ~~~~~g~~~~~v~~-------~d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~ 226 (447)
..|.++..++. .|++.+++.++ +++++++++.+||||||.+.+ +++|+++|++||+++|+|++|.
T Consensus 161 ---~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~ 237 (423)
T PLN02397 161 ---DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQ 237 (423)
T ss_pred ---HcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccC
Confidence 25777766643 17888877773 256888999999999999986 5678888999999999999997
Q ss_pred CCCCCc--------cC---C-CCeEEEeCCCccccCCCCeeEEEEE---cChHHHHHHH----HHhhhhhhhcC-CCccH
Q 013210 227 PLVLSP--------AR---L-GADVVVHSISKFISGGADIIAGAVC---GPANLVNSMM----DLHQGALMLLG-PTMNP 286 (447)
Q Consensus 227 ~~~~~~--------~~---~-g~di~~~S~sK~~g~~g~~igG~l~---~~~~~~~~l~----~~~~~~~~~~g-~~~~~ 286 (447)
.+.++. .. . ...+++.||||.|+++|+|+ ||++ .++++++.+. ...... ..+ +...+
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~Rv-G~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~q 314 (423)
T PLN02397 238 GFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERV-GALSVVCKSADVAVRVKSQLKLIARPM--YSNPPIHGA 314 (423)
T ss_pred CccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccc-eEEEEEeCCHHHHHHHHHHHHHHHhcc--cCCCcHHHH
Confidence 765431 01 1 24688999999999999999 9874 4566554433 222210 112 22233
Q ss_pred HHHHHHHccCC-------cHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 287 KVAFELSERIP-------HLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 287 ~~a~~~~~~~~-------~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
.++..++.... .+....+++.++++.+.+.|++++
T Consensus 315 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~ 356 (423)
T PLN02397 315 SIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARG 356 (423)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333333211 133455678899999999999875
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=199.11 Aligned_cols=290 Identities=15% Similarity=0.235 Sum_probs=186.7
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCC-------CeEEEeCCCchhHHHHHHhhcCcc------
Q 013210 96 HFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSG-------GHVVAARTLYGGTHALLTHFFPRA------ 162 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~g-------d~Vi~~~~~y~~~~~~~~~~~~~~------ 162 (447)
+..+...++++.++++.+.+.+++|+||++|+.++++.+...+ ++|++..+.|+++...........
T Consensus 78 ~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~ 157 (396)
T PRK02627 78 YYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGF 157 (396)
T ss_pred cCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccC
Confidence 3477888999999999999999999999999999998765432 679999999987754432111000
Q ss_pred --cCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcc-ccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----
Q 013210 163 --CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLA-VAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----- 231 (447)
Q Consensus 163 --~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~-v~~---l~~I~~la~~~gi~livD~~~~~~~~~----- 231 (447)
....+..++..|++++++++ .+++++|++++++||+|. +.+ +++|.++|++||+++|+||+|+++...
T Consensus 158 ~~~~~~~~~~~~~d~~~l~~~i-~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~ 236 (396)
T PRK02627 158 EPLVEGFIYVPFNDIEALKAAI-TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFA 236 (396)
T ss_pred CCCCCCceEeCCCCHHHHHHhc-CCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceee
Confidence 01123445556999999999 778999999999999994 443 889999999999999999999665322
Q ss_pred ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 232 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 232 ~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
....+.+.-+.|+||.++ +|.|+ |++++++++++.+..... .....++.+.+.++..++..++. ....++..++.+
T Consensus 237 ~~~~~~~pdi~t~sK~~~-~G~ri-g~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~ 312 (396)
T PRK02627 237 YQHYGIEPDIMTLAKGLG-GGVPI-GAVLAKEKVADVFTPGDH-GSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGE 312 (396)
T ss_pred ehhcCCCCCEEEEcchhh-CCccc-EEEEEcHHHHhccCCCCC-CCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHH
Confidence 112233222446899999 78998 888888888877754322 11233333444444444433222 123445556666
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~ 391 (447)
++.+.|++..... |.... ..+.|.++++.+.. ....+...+... |+ .+..+
T Consensus 313 ~~~~~l~~~~~~~--~~~~~-------------~~~~g~~~~i~~~~--~~~~~~~~l~~~---Gv-~v~~~-------- 363 (396)
T PRK02627 313 YLRAKLRELLEKY--PGIKE-------------VRGLGLMIGIELDR--PAAEIVKKALEK---GL-LINVT-------- 363 (396)
T ss_pred HHHHHHHHHHHhC--CCeee-------------eccCcEEEEEEecC--cHHHHHHHHHHC---Ce-EEeec--------
Confidence 6666665532111 11110 01467789998842 256677777652 32 22211
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..+.+||++. ...+++.++.+.+.|++.
T Consensus 364 -------------------~~~~lRi~~~-~~~~~~~i~~~~~~l~~~ 391 (396)
T PRK02627 364 -------------------GDNVLRLLPP-LIISKEEIDEAVDRLEEV 391 (396)
T ss_pred -------------------CCCEEEEECC-cccCHHHHHHHHHHHHHH
Confidence 1366999987 555566666666555543
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-22 Score=196.81 Aligned_cols=289 Identities=16% Similarity=0.166 Sum_probs=184.1
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh----cCCCC----eEEEeCCCchhHHHHHHhhcC--cc-cC-
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL----CSSGG----HVVAARTLYGGTHALLTHFFP--RA-CN- 164 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l----~~~gd----~Vi~~~~~y~~~~~~~~~~~~--~~-~g- 164 (447)
.++...+++++++++.+.+.++|++||++|+..+++.+ ..+|+ +|++.++.||++......... .. .+
T Consensus 71 ~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 150 (389)
T PRK01278 71 RIPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGF 150 (389)
T ss_pred CChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccC
Confidence 45667889999999988889999999999999999876 34454 899999999987654421100 00 00
Q ss_pred ----eeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013210 165 ----ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLSP---- 232 (447)
Q Consensus 165 ----~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~~---- 232 (447)
..+..++..|++++++++ ++++++|++++++|++|.+. .+++|.++|++||+++|+||+|+++....
T Consensus 151 ~~~~~~~~~~~~~d~~~l~~~l-~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~ 229 (389)
T PRK01278 151 GPLVPGFDQVPFGDIEALKAAI-TPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFA 229 (389)
T ss_pred CCCCCCceEeCCCCHHHHHHhh-CCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccee
Confidence 113345556999999999 67899999999999999443 48899999999999999999996553211
Q ss_pred -cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 233 -ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 233 -~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
...+.+..+.|++|.++ +|.++ |++++++++++.+..... ..+..++.+.+.++..++..++. ....++..++.+
T Consensus 230 ~~~~~~~pdi~t~sK~l~-~G~~i-g~~~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~~~~~~ 305 (389)
T PRK01278 230 HEWAGVTPDIMAVAKGIG-GGFPL-GACLATEEAAKGMTPGTH-GSTYGGNPLAMAVGNAVLDVILA-PGFLDNVQRMGL 305 (389)
T ss_pred ecccCCCCCEEEEehhcc-CCcce-EEEEEcHHHHhccCCCCC-CCCCCccHHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 11233333457999999 68898 888888888777754333 22223333333334333433321 123455566666
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~ 391 (447)
++.+.|++.... +|.+.. ...|.|.++++++.. ....+.+.|... |+ .+.
T Consensus 306 ~l~~~l~~l~~~--~~~~~~------------~v~g~G~~~~i~~~~--~~~~~~~~l~~~---GV-~~~---------- 355 (389)
T PRK01278 306 YLKQKLEGLVDR--FPDVIE------------EVRGKGLLLGLKCVV--PNRDLVQALRDE---GL-LTV---------- 355 (389)
T ss_pred HHHHHHHHHHhh--CCCcee------------eEecccEEEEEEEec--CHHHHHHHHHHC---Ce-EEe----------
Confidence 777766653110 111000 111467788888853 245677777652 32 211
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
|. ..+.|||++. ...+++.++.+.+.|++
T Consensus 356 p~-----------------~~~~lR~~p~-~~~~~~~i~~~l~~l~~ 384 (389)
T PRK01278 356 GA-----------------GDNVVRLLPP-LIITEEEIDEALERLER 384 (389)
T ss_pred ec-----------------CCCEEEEeCC-cccCHHHHHHHHHHHHH
Confidence 11 1367999987 54445555555555544
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-21 Score=189.22 Aligned_cols=306 Identities=18% Similarity=0.210 Sum_probs=204.2
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+...++|+.+|+++|.+.+++++||++|+.+++.++ +++||+|+++.++|.++...+. ..|.++++++.+
T Consensus 28 g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~-----~~G~~~~~~~~~~~~ 102 (380)
T TIGR03588 28 GPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCAL-----YCGAKVDFVDIDPDT 102 (380)
T ss_pred ChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHH-----HcCCEEEEEecCCCc
Confidence 4667899999999999988888999999999999998 7899999999999998876652 268889888763
Q ss_pred ---CHHHHHHhhcc----CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCC----eEEE
Q 013210 174 ---DHEMVNSAIVQ----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA----DVVV 241 (447)
Q Consensus 174 ---d~~~l~~~i~~----~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~----di~~ 241 (447)
|++++++++ + ++|++|++ .|++|...|+++|.++|+++|+++|+|++|+ +..++...+|. |+.+
T Consensus 103 ~~~d~~~l~~~i-~~~~~~~t~~v~~---~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~ 178 (380)
T TIGR03588 103 GNIDEDALEKKL-AAAKGKLPKAIVP---VDFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATV 178 (380)
T ss_pred CCcCHHHHHHHh-hcccCCCceEEEE---eCCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEE
Confidence 889999999 5 68898885 4578999999999999999999999999993 32344444455 9999
Q ss_pred eCCC--ccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh-------------------hcC--CCccHHHHHHHHccCC
Q 013210 242 HSIS--KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM-------------------LLG--PTMNPKVAFELSERIP 297 (447)
Q Consensus 242 ~S~s--K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~-------------------~~g--~~~~~~~a~~~~~~~~ 297 (447)
+|+| |+++.+. ||+++. ++++.++++..+..... ..| ..++...+...+..++
T Consensus 179 ~S~~~~K~~~~~~---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~ 255 (380)
T TIGR03588 179 FSFHPVKIITTAE---GGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLK 255 (380)
T ss_pred EecCCCCcccccC---ceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHH
Confidence 9987 8887532 576654 67777777654331100 011 2234444444444556
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQ 374 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~ 374 (447)
.+....++.+++.+++.+.|...+. .+..+.....+ .-.+..+.+.. ......+.+.|...
T Consensus 256 ~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~r~~l~~~L~~~-- 319 (380)
T TIGR03588 256 KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKS--------------AWHLYPILLDQEFGCTRKEVFEALRAA-- 319 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEe--------------EEEEEEEEECCcCCCCHHHHHHHHHHC--
Confidence 6777778888889999999987754 22222100000 00133344431 12356777777653
Q ss_pred cccccccccCcccccccccccc---CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 375 FGFMAVSLGYYETLMSCSGSST---SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 375 ~g~~~vs~G~~~s~~~~~a~~~---~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
| |.+..... .+...|.... ....+..+. +....|++.++ ..-++++++.+.++|+++
T Consensus 320 -g-I~~~~~~~-~~~~~~~~~~~~~~~~~p~a~~----~~~~~l~lP~~-~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 320 -G-IGVQVHYI-PVHLQPYYRQGFGDGDLPSAEN----FYLAEISLPLH-PALTLEQQQRVVETLRKV 379 (380)
T ss_pred -C-CCcccCCc-ccccChhhhccCCcCCCcHHHH----HHhceEEcCCC-CCCCHHHHHHHHHHHHHh
Confidence 3 44443321 1111111111 111222221 22478999999 877888888888888764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-21 Score=188.39 Aligned_cols=309 Identities=17% Similarity=0.210 Sum_probs=203.7
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+.++++++.++++.|.+.+++|+|||+|+.+++.++ +++||+|+++.++|.++...+. ..|.++++++.+
T Consensus 30 g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~-----~~G~~~v~vd~d~~~ 104 (376)
T TIGR02379 30 GPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFV-----LRGAKIVFVDIRPDT 104 (376)
T ss_pred cHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCCCc
Confidence 4678999999999999999999999999999999887 7899999999999999877663 268898888764
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCCC--CeEEEeCCC--
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLG--ADVVVHSIS-- 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~g--~di~~~S~s-- 245 (447)
|++++++++ +++|++|+ |+|++|...|+++|.++|++||+++|+|++|+... ++....| .|+.++||+
T Consensus 105 ~~~d~~~le~~i-~~~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~ 180 (376)
T TIGR02379 105 MNIDETLIESAI-THRTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHET 180 (376)
T ss_pred CCCCHHHHHHhc-CcCceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCC
Confidence 788999999 77899986 67889999999999999999999999999984332 3333333 377777764
Q ss_pred ccccCCCCeeEEEEE-cChHHHHHHHHHhhhhhh---------------hcCC--CccHHHHHHHHccCCcHHHHHHHHH
Q 013210 246 KFISGGADIIAGAVC-GPANLVNSMMDLHQGALM---------------LLGP--TMNPKVAFELSERIPHLGLRMKEHC 307 (447)
Q Consensus 246 K~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~---------------~~g~--~~~~~~a~~~~~~~~~l~~~~~~~~ 307 (447)
|.+.. |.+ ||+++ .++++.++++.++..+.. ..|. .+....|...+..++.+.+..++..
T Consensus 181 K~l~~-g~~-gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~ 258 (376)
T TIGR02379 181 KNYTS-GGE-GGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRL 258 (376)
T ss_pred CcCcc-cCC-ceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHH
Confidence 55553 334 47665 458888888776542210 0121 1333445555556677777777778
Q ss_pred HHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCc
Q 013210 308 HRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 385 (447)
Q Consensus 308 ~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~ 385 (447)
+++++..+.|..+.. .+..|..+....+ .-.++++.++......++++.|... | +.+..+..
T Consensus 259 ~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~r~~l~~~L~~~---g-I~~~~~~~ 322 (376)
T TIGR02379 259 ATWQLYQDALKPLEEKGIIELPSIPNGCQH------------NAHMFYIKLKDEDDRNELIKYLKEQ---E-IMAVFHYV 322 (376)
T ss_pred HHHHHHHHHhccCCcCCeeeCCCCCCCCee------------eeEEEEEEECCcCCHHHHHHHHHHC---C-CCccccCc
Confidence 888888888876531 1222322111100 0025566665422356778888763 3 34333321
Q ss_pred ccccccccccc----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 386 ETLMSCSGSST----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 386 ~s~~~~~a~~~----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+-..|.... ....+..+. +....|.|=++ ..-+++.++.+.++++++
T Consensus 323 -p~~~~~~~~~~~~~~~~~p~~~~----~~~~~l~LP~~-~~l~~~~~~~i~~~i~~~ 374 (376)
T TIGR02379 323 -PLHSSPAGRYFGRFHGEDIYTTK----ESERLVRLPLY-YGLSKEDQARVIQTICDY 374 (376)
T ss_pred -CCCcchhHHhhCCCCCCChHHHH----HHhceEEccCC-CCCCHHHHHHHHHHHHHH
Confidence 1111121000 011122111 12456777777 667778888888887654
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=194.25 Aligned_cols=291 Identities=15% Similarity=0.151 Sum_probs=191.6
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc--------CCCCeEEEeCCCchhHHHHHHhhcC--c-----
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTHFFP--R----- 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~--------~~gd~Vi~~~~~y~~~~~~~~~~~~--~----- 161 (447)
.++...+++++|+++.+.+.++|++||++|+..+++... ...++|+..+..||+........-. .
T Consensus 75 ~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~ 154 (397)
T TIGR03246 75 TNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGF 154 (397)
T ss_pred CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCC
Confidence 456678999999999988899999999999999998652 1235788888888876433211100 0
Q ss_pred -ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCC-----
Q 013210 162 -ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS----- 231 (447)
Q Consensus 162 -~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~----- 231 (447)
.....+..++.+|++++++.+ .+++++|++|+++++.|.+. .+++|.++|++||+++|+||+|+++...
T Consensus 155 ~~~~~~~~~~~~~d~~~l~~~l-~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a 233 (397)
T TIGR03246 155 APLPGGIKHAPYNDLAAAKALI-SDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYA 233 (397)
T ss_pred CCCCCceEEeCCCCHHHHHHHh-ccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchh
Confidence 011234567778999999999 67899999999888888664 3899999999999999999999655221
Q ss_pred ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 232 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 232 ~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
...+++...+.+++|.+| .|.++ |++++++++++.+..... ..+..++++...++.+.+..++. .+..++++++.+
T Consensus 234 ~~~~gv~pDi~t~~K~lg-gG~pi-gav~~~~~i~~~~~~~~~-~~t~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~~~ 309 (397)
T TIGR03246 234 YMHYGVTPDILTSAKALG-GGFPI-GAMLTTTEIAAHLKVGTH-GTTYGGNPLACAVAGKVLDLVNT-PELLAGVKQRHD 309 (397)
T ss_pred hhhcCCCCCEEEeehhhh-CCcce-eEEEEcHHHHHhccCCCc-CCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHH
Confidence 122233333446999998 57888 888889888877753322 22233444444444444433321 335677788888
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccCccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
++.+.|++.+.+. +-.. ...|.|.++.+.+.. ......+...|... |++....
T Consensus 310 ~l~~~L~~l~~~~--~~~~-------------~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~---Gv~~~~~------- 364 (397)
T TIGR03246 310 LFVDGLEKINARY--NVFS-------------EIRGKGLLIGAVLTEAYQGKAKQFVNAAAEE---GVIALIA------- 364 (397)
T ss_pred HHHHHHHHHHhcC--CCeE-------------eeecCceEEEEEEcCchhhHHHHHHHHHHHC---CeEEeec-------
Confidence 8988888754211 1000 112567788888863 23456777777652 3222111
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..+.||+++. ...+++.++.+.++|++.
T Consensus 365 ---------------------g~~~lR~~p~-~~~t~~~i~~~~~~l~~~ 392 (397)
T TIGR03246 365 ---------------------GPNVVRFAPS-LVISDDDIDEGLARFERA 392 (397)
T ss_pred ---------------------CCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 1367999888 666666666666665543
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=193.98 Aligned_cols=289 Identities=16% Similarity=0.188 Sum_probs=188.6
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc--------CCCCeEEEeCCCchhHHHHHHhh---------cC
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTHF---------FP 160 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~--------~~gd~Vi~~~~~y~~~~~~~~~~---------~~ 160 (447)
.+...+++++|+++.+.+.++|++||++|+..+++... ...++|+..+..||+........ ..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~ 160 (403)
T PRK05093 81 NEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFG 160 (403)
T ss_pred CHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCC
Confidence 45567899999999888899999999999999998542 12357888888888865322111 10
Q ss_pred cccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013210 161 RACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP---- 232 (447)
Q Consensus 161 ~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~---- 232 (447)
. ....+..++.+|++++++.+ .+++++|++|+++++.|.+.+ +++|.++|++||+++|+||+|+++....
T Consensus 161 ~-~~~~~~~~~~~d~~~l~~~l-~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~ 238 (403)
T PRK05093 161 P-KPADITHVPFNDLAAVKAVI-DDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFA 238 (403)
T ss_pred C-CCCCcEEeCCCCHHHHHHHh-cCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchh
Confidence 1 12345667778999999999 778999999955544454433 8999999999999999999996653321
Q ss_pred -cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 233 -ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 233 -~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
...+.+..+.|++|.++ +|.|+ |++++++++++.+....... +..++.+.+.++..++..+. ..+..++++++++
T Consensus 239 ~~~~~~~pdi~s~sK~l~-~G~ri-g~vv~~~~i~~~l~~~~~~~-t~~~~~~~~~aa~a~L~~~~-~~~~~~~~~~~~~ 314 (403)
T PRK05093 239 YMHYGVTPDILTSAKALG-GGFPI-GAMLTTAEIASHFKVGTHGS-TYGGNPLACAVAEAVFDIIN-TPEVLEGVKARRQ 314 (403)
T ss_pred hhhcCCCCCEEEeccccc-CCcce-EEEEEcHHHHhhcCCCCCCC-CCCCCHHHHHHHHHHHHHHh-hccHHHHHHHHHH
Confidence 12233333567999999 78998 99999999888776432211 12333333433344333332 2335577888899
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccCccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
++.+.|++++..... ... ..+.|.++++.++.. .....|...|... |+ .+..+
T Consensus 315 ~l~~~L~~~~~~~~~--~~~-------------~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~---Gv-~v~~~------ 369 (403)
T PRK05093 315 RFVDGLQKINQKYGV--FSE-------------IRGMGLLIGAELKPQYKGRARDFLNAAAEE---GV-MVLVA------ 369 (403)
T ss_pred HHHHHHHHHHhhCCC--eEe-------------EeeCceEEEEEecCcchhHHHHHHHHHHHC---Ce-EEecC------
Confidence 999999876321110 000 114677999998642 2456777777652 32 22111
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..+.+||+++ ...+++.++.+.+.|+++
T Consensus 370 ---------------------g~~~lRl~~~-~~~~~~~i~~~~~~l~~~ 397 (403)
T PRK05093 370 ---------------------GPDVLRFAPS-LVIEEADIDEGLARFEKA 397 (403)
T ss_pred ---------------------CCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 1367999988 655566666666665544
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=195.96 Aligned_cols=239 Identities=21% Similarity=0.158 Sum_probs=171.1
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchh---
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG--- 150 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~--- 150 (447)
+.+.+++... .|.......++.+ ..+..+++.+|+++|++.++++++|+.|+++++.+ +.+||+||++..+|..
T Consensus 104 eav~~~~~~~-~~le~~l~~g~~g-~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~-l~~GdeVIvs~~e~~~~gg 180 (464)
T PRK04311 104 EAVTEAARGY-SNLEYDLATGKRG-SRDRALAALLCALTGAEDALVVNNNAAAVLLALNA-LAAGKEVIVSRGELVEIGG 180 (464)
T ss_pred HHHHHHHhcc-cccccchhhcccc-hHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHH-hCCCCEEEEcchhhhhcCc
Confidence 6666665542 2222111113323 44679999999999999999999999999998865 5789999999876542
Q ss_pred HHHHHHhhcCcccCeeEEEeCC---CCHHHHHHhhccCCceEEEEEcCCCC--Cc--cccCHHHHHHHHHhcCCEEEEeC
Q 013210 151 THALLTHFFPRACNITTTFVDI---SDHEMVNSAIVQGRTKVLYFESISNP--TL--AVANIPELSRLAHDKGVTVVVDN 223 (447)
Q Consensus 151 ~~~~~~~~~~~~~g~~~~~v~~---~d~~~l~~~i~~~~t~lV~i~~~~Np--tG--~v~~l~~I~~la~~~gi~livD~ 223 (447)
... +...+.+ .|+++++++. .+++++++++ +++|++|++++++|+ +| .+.|+++|+++||+||+++++|+
T Consensus 181 s~~-i~~~~~~-~G~~l~~v~~~~~t~~~dle~aI-~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 181 AFR-IPDVMRQ-AGARLVEVGTTNRTHLRDYEQAI-NENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred chh-hHHHHHH-CCcEEEEECCCCCCCHHHHHHhc-CccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 222 2223334 7999998876 3789999999 889999999999998 34 67899999999999999999999
Q ss_pred CCCCC-------------CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh-hhhhcCCCccHHHH
Q 013210 224 TFSPL-------------VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-ALMLLGPTMNPKVA 289 (447)
Q Consensus 224 ~~~~~-------------~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~-~~~~~g~~~~~~~a 289 (447)
..+.+ ..++.++|+|++++|++|++|||. +|+++++++++++++...-. .....+.++++..+
T Consensus 258 gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~---~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~ 334 (464)
T PRK04311 258 GSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ---AGIIVGKKELIARLKKHPLKRALRVDKLTLAALEA 334 (464)
T ss_pred CCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCc---eEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHH
Confidence 53211 123456799999999999999874 59999999998877631110 11122444444444
Q ss_pred HHH-----------HccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 290 FEL-----------SERIPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 290 ~~~-----------~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
++. +..++.+..+++++.++++.++++|+.+.
T Consensus 335 ~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~ 377 (464)
T PRK04311 335 TLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAAL 377 (464)
T ss_pred HHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhcc
Confidence 332 22233366788899999999999998864
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-20 Score=182.65 Aligned_cols=309 Identities=14% Similarity=0.146 Sum_probs=202.9
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+.++++++.+++++|.+.+++|+||++|+.+++.++ +++||+|+++.++|.++...+. ..|.++++++.+
T Consensus 30 ~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~-----~~G~~~v~~d~d~~~ 104 (375)
T PRK11706 30 GGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFV-----LRGAKIVFVDIRPDT 104 (375)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCCCc
Confidence 4567899999999999999999999999999988766 6899999999999999987763 368888888754
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCC--CCeEEEeCCC--
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARL--GADVVVHSIS-- 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~--g~di~~~S~s-- 245 (447)
|++++++++ ++++++|++. |++|...++++|.++|+++|+++|+|++|+... ++.... ..|+.++|++
T Consensus 105 ~~~d~~~le~~i-~~~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~ 180 (375)
T PRK11706 105 MNIDETLIEAAI-TPKTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHET 180 (375)
T ss_pred CCcCHHHHHHhc-CCCCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCC
Confidence 789999999 7789999864 579999999999999999999999999994332 332222 2578888887
Q ss_pred ccccCCCCeeEEEEEcChHHHHHHHHHhhhhh---------------hhcCCC--ccHHHHHHHHccCCcHHHHHHHHHH
Q 013210 246 KFISGGADIIAGAVCGPANLVNSMMDLHQGAL---------------MLLGPT--MNPKVAFELSERIPHLGLRMKEHCH 308 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~---------------~~~g~~--~~~~~a~~~~~~~~~l~~~~~~~~~ 308 (447)
|.++. |.+ |++++.++++.++++..+.... ...|.+ +....|...+..++.+....++.++
T Consensus 181 K~l~~-g~g-G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~ 258 (375)
T PRK11706 181 KNYTA-GEG-GALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLA 258 (375)
T ss_pred ccccc-cCC-eEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99975 543 3566677888887776553210 011222 2334455555556666667777778
Q ss_pred HHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcc
Q 013210 309 RALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 309 ~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
+.+++.+.|...+. .+..|..+... .....++++.++.......+.+.|...+ +.++... .
T Consensus 259 ~~~~~~~~L~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~r~~l~~~L~~~g----I~~~~~~-~ 321 (375)
T PRK11706 259 LWQRYYDALAPLAEAGRIELPSIPDDC------------KHNAHMFYIKLRDLEDRSALINFLKEAG----IMAVFHY-I 321 (375)
T ss_pred HHHHHHHHhcCCCcCCeeecCCCCCCC------------ceeeEEEEEEECCcCCHHHHHHHHHHCC----CCccccC-C
Confidence 88888888876541 12222211100 0112266677764334567888887633 4444332 1
Q ss_pred cccccccccc----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 387 TLMSCSGSST----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 387 s~~~~~a~~~----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+..+|.... ....+..+.. ....|-+-++ ..-++++++.+.++|+++
T Consensus 322 p~~~~~~~~~~~~~~~~~p~a~~~----~~~~l~lP~~-~~l~~~~~~~i~~~i~~~ 373 (375)
T PRK11706 322 PLHSSPAGERFGRFHGEDRYTTKE----SERLLRLPLF-YNLTDVEQRTVIDTILEF 373 (375)
T ss_pred ccCcchhhHhcCCCCCCChHHHHH----HhCcEeccCC-CCCCHHHHHHHHHHHHHH
Confidence 2211222111 0122222221 2355666666 555667777777777654
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=191.50 Aligned_cols=254 Identities=17% Similarity=0.147 Sum_probs=166.3
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC----------CCCeEEEeCCCchhHHHHHHhhcCc------
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS----------SGGHVVAARTLYGGTHALLTHFFPR------ 161 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~----------~gd~Vi~~~~~y~~~~~~~~~~~~~------ 161 (447)
.+..+.+++.++++.+.+.++|++||++|+..+++.+.. .+++|++.+..|++...........
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~ 151 (400)
T PTZ00125 72 NDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNN 151 (400)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhcc
Confidence 567789999999999988999999999999999986631 2468999998888765433111100
Q ss_pred --ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC----
Q 013210 162 --ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS---- 231 (447)
Q Consensus 162 --~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~---- 231 (447)
.....+..++..|+++|+++++.+++++|++++++||+|.+.| +++|.++|++||+++|+||+|+++...
T Consensus 152 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~ 231 (400)
T PTZ00125 152 FGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL 231 (400)
T ss_pred CCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh
Confidence 0011234556679999999994367999999999999999987 999999999999999999999655321
Q ss_pred -c--cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHH
Q 013210 232 -P--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCH 308 (447)
Q Consensus 232 -~--~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~ 308 (447)
. .....|+++ ++|.+++++.++ |+++.++++++.+..... ..+..++...+.++...+..+.. ....++..+
T Consensus 232 ~~~~~~~~pd~~~--~sK~l~~g~~~i-g~v~~~~~~~~~~~~~~~-~~t~~~~~~~~~aa~~~l~~i~~-~~~~~~~~~ 306 (400)
T PTZ00125 232 AHDHEGVKPDIVL--LGKALSGGLYPI-SAVLANDDVMLVIKPGEH-GSTYGGNPLACAVAVEALEVLKE-EKLAENAQR 306 (400)
T ss_pred HHHhcCCCCCEEE--EcccccCCCcCc-EEEEEcHHHHhhccCCCC-CCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 1 122356665 679999755588 899999998887754322 11223333333333332322211 112344555
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhc
Q 013210 309 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQN 371 (447)
Q Consensus 309 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~ 371 (447)
+.+++.+.|++.-.. ++.... ..+.|.++++.++. ......+.+.|..
T Consensus 307 ~~~~l~~~l~~l~~~--~~~~~~-------------~~~~g~~~~v~~~~~~~~~~~~~~~~l~~ 356 (400)
T PTZ00125 307 LGEVFRDGLKELLKK--SPWVKE-------------IRGKGLLNAIVFDHSDGVNAWDLCLKLKE 356 (400)
T ss_pred HHHHHHHHHHHHHhc--CCCeEE-------------EecccEEEEEEEccCcchHHHHHHHHHHH
Confidence 666777777653100 010000 01457788888863 2345667777764
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-21 Score=192.94 Aligned_cols=291 Identities=16% Similarity=0.209 Sum_probs=195.8
Q ss_pred chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 99 PTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+.++++.+++++|.+ .+++|+||++++.+++.++. .+||+|+++++.|+++...+..+... .|.+++.++.+
T Consensus 112 ~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~-~G~~~~~v~~~~~ 190 (447)
T PRK00451 112 QAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKG-QGIEVVEVPYEDG 190 (447)
T ss_pred HHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHh-CCcEEEEecCCCC
Confidence 34556667889999975 47899999999999888874 78999999999999988887544433 68898888875
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEE--eCCCCCCCCCccCCCCeEEEeCCCcc--
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV--DNTFSPLVLSPARLGADVVVHSISKF-- 247 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~liv--D~~~~~~~~~~~~~g~di~~~S~sK~-- 247 (447)
|++++++++ +++|++|++++| |+||.+.|+++|+++|+++|+++++ |.+..+....+.++++|+++.|.+|+
T Consensus 191 ~~d~~~l~~~i-~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~~g~~~~~~~~~~D~~~~s~~k~~~ 268 (447)
T PRK00451 191 VTDLEALEAAV-DDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLGLLKPPGEYGADIVVGEGQPLGI 268 (447)
T ss_pred CCCHHHHHHhc-CCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHHhccCCCcccCCCCEEEECCCcCCC
Confidence 899999999 788999999998 8999999999999999999999998 64443333345677999999977665
Q ss_pred -ccCCCCeeEEEEEcChHHHHHHHH-------------------------Hhhhh-hhhcCCCc-cH-HHHHHHHc--cC
Q 013210 248 -ISGGADIIAGAVCGPANLVNSMMD-------------------------LHQGA-LMLLGPTM-NP-KVAFELSE--RI 296 (447)
Q Consensus 248 -~g~~g~~igG~l~~~~~~~~~l~~-------------------------~~~~~-~~~~g~~~-~~-~~a~~~~~--~~ 296 (447)
+...|.++ |+++.++++++.+.. .+... ....+... .+ .+++..+. ..
T Consensus 269 ~~~~~Gpg~-G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~ 347 (447)
T PRK00451 269 PLSFGGPYL-GFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGP 347 (447)
T ss_pred CCCCCCCCc-hHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCH
Confidence 22223345 999888888776310 00000 00111111 11 22222222 22
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013210 297 PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 375 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~ 375 (447)
..+.+..+++.++++++.+.|++++. ++. ++ + ...++.+.++. ...++.++|...
T Consensus 348 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~----~--------------~~~~~~v~~~~--~~~~~~~~L~~~--- 403 (447)
T PRK00451 348 EGLRELAEQNHQKAHYLAERLAEIGGVELF-DG----P--------------FFNEFVVRLPK--PAEEVNEALLEK--- 403 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCEEec-CC----C--------------eEEEEEEecCC--CHHHHHHHHHhc---
Confidence 33666778889999999999998753 443 21 0 01133455531 245677777652
Q ss_pred ccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 376 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 376 g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
|+++ .+- ..... .+. .+.+|+|++ ..++++.++.|.++|+++
T Consensus 404 gi~~-~~~---------~~~~~----------~~~-~~~~rvs~~-~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 404 GILG-GYD---------LGRYY----------PEL-GNHLLVCVT-EKRTKEDIDALVAALGEV 445 (447)
T ss_pred CCCC-Ccc---------ccccc----------CCc-CCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 2221 110 00000 011 368999999 889999999999999875
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-20 Score=174.01 Aligned_cols=311 Identities=19% Similarity=0.177 Sum_probs=208.8
Q ss_pred ccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEE
Q 013210 63 EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVV 142 (447)
Q Consensus 63 ~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi 142 (447)
.+|.|..-+.++.++.+.+... .....|| .++..+++++++++++|.+.++|++|||+||..+|.+.+++|..|+
T Consensus 4 f~SDn~~g~~~~m~eam~~a~~---~~~~~YG--~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi 78 (342)
T COG2008 4 FRSDNVAGPTPEMREALAAANA---VGDDVYG--EDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVI 78 (342)
T ss_pred cccCccCCCCHHHHHHHHhccc---cCCCCCC--CCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEE
Confidence 4677887777777776665542 2234566 4788899999999999999999999999999999999999999999
Q ss_pred EeCCCchhHHHHHH-hhcCcccCeeEEEeCCC----CHHHHHHhhccC-----CceEEEEEcCCCCCccccCH---HHHH
Q 013210 143 AARTLYGGTHALLT-HFFPRACNITTTFVDIS----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANI---PELS 209 (447)
Q Consensus 143 ~~~~~y~~~~~~~~-~~~~~~~g~~~~~v~~~----d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l---~~I~ 209 (447)
+....|-..++.-. .++. .+.+...++.. ++++|++.++.+ .+.++++++..|+.|+++|+ ++|.
T Consensus 79 ~~~~aHi~~~E~Ga~~~~~--~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~ 156 (342)
T COG2008 79 CHETAHIYTDECGAPEFFG--GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAIS 156 (342)
T ss_pred EeccccceecccCcHHHHc--CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHH
Confidence 99988765443321 1111 13344444422 899999987432 46788888877899999984 5778
Q ss_pred HHHHhcCCEEEEeCCC-C----CCCCCc--cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCC
Q 013210 210 RLAHDKGVTVVVDNTF-S----PLVLSP--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 282 (447)
Q Consensus 210 ~la~~~gi~livD~~~-~----~~~~~~--~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~ 282 (447)
++||++|+.+|+|.+- . .+..+. ...++|++++++||..+.++ |.+|+++.+++++++.++. ..|.
T Consensus 157 ~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK----~~Gg 229 (342)
T COG2008 157 AVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARRWRK----RAGG 229 (342)
T ss_pred HHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCccee---eeEEEcCHHHHHHHHHHHH----Hhcc
Confidence 8899999999999884 1 111111 12389999999999999874 4667899999999988877 4555
Q ss_pred CccHH--HHHHHHccCCcHHHHHHHHH--HHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 283 TMNPK--VAFELSERIPHLGLRMKEHC--HRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 283 ~~~~~--~a~~~~~~~~~l~~~~~~~~--~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
.+++. .+...+..+++-..+..... +.+.+|++.|... |.++..|. ..+++-+.++
T Consensus 230 l~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~-------------------~tN~vf~~l~ 290 (342)
T COG2008 230 LMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPV-------------------ETNMVFVRLP 290 (342)
T ss_pred cHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCC-------------------cccEEEEECC
Confidence 44432 12222222233222333333 4489999999855 66777663 1237778876
Q ss_pred CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCC--CeEEEEeCCCCCHHHHHHHHHHH
Q 013210 358 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA--GLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 358 ~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~--~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
... . +.+...+ ...-.| ..++. ..+|+-.. ..++++.++++...
T Consensus 291 ~~~-i----~~l~~~~----~~~~~~------------------------~~~~~~~~~vRfvts-~a~~~edv~~~~~~ 336 (342)
T COG2008 291 ESA-I----EALRLAG----ALFYRG------------------------VLIGAHGEIVRFVTS-WATSEEDVDELVAA 336 (342)
T ss_pred hHH-H----HHHHhhc----hhheee------------------------eeccCCCceEEEEee-ccCCHHHHHHHHHH
Confidence 432 1 2222110 000111 00111 36999999 99999999999888
Q ss_pred HHHhh
Q 013210 436 LSRMQ 440 (447)
Q Consensus 436 l~~~~ 440 (447)
++++.
T Consensus 337 ~~~~~ 341 (342)
T COG2008 337 IKALL 341 (342)
T ss_pred HHHhh
Confidence 87753
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-20 Score=172.55 Aligned_cols=227 Identities=19% Similarity=0.193 Sum_probs=167.7
Q ss_pred HHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 102 LNLSRQMAALEG----------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 102 ~~l~~~ia~l~g----------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..+++.+|++.. .+++++++|+|.|++.+...|+.|||..+++.|.|+++-.-+.. + .|++++.|.
T Consensus 124 ~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~---r-Tgveivpv~ 199 (471)
T KOG0256|consen 124 PSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRW---R-TGVEIVPVH 199 (471)
T ss_pred hHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCccccccee---c-cCceEEEEE
Confidence 468888888862 35699999999999999999999999999999999998655521 3 588877765
Q ss_pred CC-------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc---
Q 013210 172 IS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA--- 233 (447)
Q Consensus 172 ~~-------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~--- 233 (447)
.. +.+++|+++++ .+++.|++.+|+||.|++.+ +..+..+|.++++.+|+||+|+.-.++-.
T Consensus 200 c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~ 279 (471)
T KOG0256|consen 200 CSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFR 279 (471)
T ss_pred eecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCce
Confidence 43 68888887732 46889999999999999987 55667778899999999999954433211
Q ss_pred -----------CCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCC-CccHHHHHHHHccCCc--
Q 013210 234 -----------RLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGP-TMNPKVAFELSERIPH-- 298 (447)
Q Consensus 234 -----------~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~-~~~~~~a~~~~~~~~~-- 298 (447)
..+..-++.|+||-+|.||.|+ |+++. ++++.....+... .... +..+.....++.. ++
T Consensus 280 Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRv-GviYS~ne~VvsaA~kmss----f~~vSs~tQ~~la~LLSD-~~f~ 353 (471)
T KOG0256|consen 280 SVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRV-GVIYSNNEDVVSAATKMSS----FGLVSSQTQYLLASLLSD-EEFT 353 (471)
T ss_pred EHHHHhhccccCCCcEEEEEEeccccCCCceEE-EEEEecChHHHHHHHHHhh----ccCCcHHHHHHHHHHhch-HHHH
Confidence 2245578899999999999999 88876 5666766666554 2222 2223333333333 32
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 299 ---LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 299 ---l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+.+..++++.+..++.+.|++.++..... +.|.++|+.+.
T Consensus 354 ~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s-------------------~AGlF~wvDlr 396 (471)
T KOG0256|consen 354 REYLRENNKRLRIRHRYIVEGLKALGIPCLKS-------------------NAGLFCWVDLR 396 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCceeec-------------------CCeeEEEEEhH
Confidence 45667778888899999999988754421 46778999875
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-20 Score=178.34 Aligned_cols=323 Identities=20% Similarity=0.262 Sum_probs=215.2
Q ss_pred HHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhH
Q 013210 73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGT 151 (447)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~ 151 (447)
.+.+.+.++..| ++. .+.+.++|+.+|+++|+..++.++|||.|+.++++++ +.+||.||++..+|..+
T Consensus 18 ~~~v~~vl~sg~--------i~~--G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvAT 87 (374)
T COG0399 18 LAAVQEVLKSGW--------LTG--GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVAT 87 (374)
T ss_pred HHHHHHHHHcCC--------eec--ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHH
Confidence 366666665432 222 5678999999999999999999999999999999966 68999999999999998
Q ss_pred HHHHHhhcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC
Q 013210 152 HALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 152 ~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~ 225 (447)
.+.+. +.|.+++++|.+ |++.||++| +++||+|+.. +-.|...|+++|.++|++||+++|.|++|
T Consensus 88 an~i~-----~~Ga~PVFvDid~~T~nid~~~ie~aI-t~~tKAIipV---hl~G~~~dm~~i~~la~~~~l~vIEDaAq 158 (374)
T COG0399 88 ANAVL-----LVGAKPVFVDIDPDTLNIDPDLIEAAI-TPRTKAIIPV---HLAGQPCDMDAIMALAKRHGLPVIEDAAQ 158 (374)
T ss_pred HHHHH-----HcCCeEEEEecCCcccCCCHHHHHHHc-ccCCeEEEEe---hhccCCCCHHHHHHHHHHcCCeEEEEcch
Confidence 88772 379999999987 899999999 8889999854 44688899999999999999999999998
Q ss_pred -CCCCCCccCCC--CeEEEeCC--CccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhh----------cC--CCccHH
Q 013210 226 -SPLVLSPARLG--ADVVVHSI--SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALML----------LG--PTMNPK 287 (447)
Q Consensus 226 -~~~~~~~~~~g--~di~~~S~--sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~----------~g--~~~~~~ 287 (447)
.+-.+.....| -|+.++|| +|.+.- |. ||+++. ++++.++++.++.++... .| ..+.-.
T Consensus 159 a~Ga~y~gk~vGt~Gd~~~fSF~~~K~itt-gE--GGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~i 235 (374)
T COG0399 159 AHGATYKGKKVGSFGDIGAFSFHATKNLTT-GE--GGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEI 235 (374)
T ss_pred hccCeecCcccccccceEEEEecCCCCccc-cC--ceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHH
Confidence 33334433333 36666666 699884 32 577755 678888887665533211 22 224445
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHH
Q 013210 288 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLM 366 (447)
Q Consensus 288 ~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~ 366 (447)
.|+..+..++.+++..++.++.++.+.+.|++.+. +..|..+..-.|.+ .+..+.++.. ..-+.++
T Consensus 236 qAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~-~~~p~~~~~~~~~~------------~~~~i~~~~~~~~R~~l~ 302 (374)
T COG0399 236 QAAIGLAQLERLDEINERRREIAQIYAEALKGLPG-ITLPPEPDGAVHAW------------HLYTILVDEEGISRDALM 302 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccCCCCCceeee------------eeeEEEecCCCCCHHHHH
Confidence 56666667777888888888888888888887753 12221111000000 1444445432 3346777
Q ss_pred HHhhcccccccccccccCccccccccccccC-----CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 367 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTS-----SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 367 ~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~-----~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
..|+.. | +. .......+..++..... ..++..+. +....+++=+. ..-+++.++.+.++|+++-
T Consensus 303 ~~L~~~---g-i~-~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~----~~~r~l~LP~~-p~l~~~~~~~V~~~l~~~~ 371 (374)
T COG0399 303 ESLKEA---G-VG-AVVYFRPLHLQPAYRQLGYFPEGDLPNAED----LSERILSLPLH-PNLSEEDVDRVIEALKEVL 371 (374)
T ss_pred HHHHhC---C-CC-ceEEeeccccchhhhcccccccCCCchHHH----HhhCeEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence 788763 2 22 11111112111111110 12222222 12456788777 7777777888877777653
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=188.58 Aligned_cols=254 Identities=17% Similarity=0.141 Sum_probs=167.8
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc--------CCCCeEEEeCCCchhHHHHHHhhcCc--c----
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTHFFPR--A---- 162 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~--~---- 162 (447)
.++...+++++|+++.+.+.++|++||++|+..+++... ...++|+..+..||+........-.. .
T Consensus 79 ~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~ 158 (406)
T PRK12381 79 TNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDF 158 (406)
T ss_pred CCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCC
Confidence 456668899999999888899999999999999998642 13467999999998876432111000 0
Q ss_pred --cCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccc-c----CHHHHHHHHHhcCCEEEEeCCCCCCCCCc---
Q 013210 163 --CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV-A----NIPELSRLAHDKGVTVVVDNTFSPLVLSP--- 232 (447)
Q Consensus 163 --~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v-~----~l~~I~~la~~~gi~livD~~~~~~~~~~--- 232 (447)
.-..+..++.+|++++++.+ .+++++|++|. .|++|-+ . .+++|.++|++||+++|+||+|+++....
T Consensus 159 ~~~~~~~~~~~~~d~~~l~~~l-~~~~aaviiEP-v~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~ 236 (406)
T PRK12381 159 APLPPDIRHAAYNDLNSASALI-DDQTCAVIVEP-IQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY 236 (406)
T ss_pred CCCCCCeeEeCCCCHHHHHHhc-cCCeeEEEEeC-CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh
Confidence 00124556667999999999 67899999985 4555543 2 38899999999999999999996553221
Q ss_pred --cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHH
Q 013210 233 --ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRA 310 (447)
Q Consensus 233 --~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~ 310 (447)
...+++..+.|++|.++ +|.++ |++++++++++.+..... ..+..++++.+.++...+..+. .....++++++.
T Consensus 237 ~~~~~~v~pDi~t~sK~l~-gG~~i-g~~~~~~~~~~~~~~~~~-~~t~~~~pl~~aaa~a~l~~l~-~~~~~~~~~~~~ 312 (406)
T PRK12381 237 AYMHYGVTPDVLTTAKALG-GGFPI-GAMLTTEKCASVMTVGTH-GTTYGGNPLASAVAGKVLELIN-TPEMLNGVKQRH 312 (406)
T ss_pred hhHhhCCCCCEEEehhhhh-CCCce-EEEEEcHHHHhhcCCCCC-CCCCCCCHHHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence 11233222457999999 57898 888899998887754322 1223344444444444333332 223567778888
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQN 371 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~ 371 (447)
+++.+.|++.+.+. +... ...|.|.++++.+... ..+..+...+..
T Consensus 313 ~~l~~~L~~l~~~~--~~~~-------------~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~ 360 (406)
T PRK12381 313 DWFVERLNTINARY--GLFS-------------EIRGLGLLIGCVLNAEYAGKAKQISQEAAK 360 (406)
T ss_pred HHHHHHHHHHHhhC--CCEE-------------EEecCeEEEEEEecCchhhHHHHHHHHHHH
Confidence 88888887753211 1000 1125778999998742 245667777765
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=185.29 Aligned_cols=220 Identities=17% Similarity=0.141 Sum_probs=155.9
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-----
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----- 172 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~----- 172 (447)
.+...+||+.+++++|.+.+++|+||++|+..++++++++||.| ++++.|..+...+. ..|..+++++.
T Consensus 52 ~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~-----~~Ga~pv~v~i~~~~~ 125 (431)
T cd00617 52 SKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIE-----ANGAVPVDLVIDEAHD 125 (431)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHH-----hCCCEeEEEecccccc
Confidence 44567999999999999999999999999999999999999977 68888888776552 25666666544
Q ss_pred ----------CCHHHHHHhhccCC----ceEEEEEcCCCCC-ccccC---HHHHHHHHHhcCCEEEEeCCCC-C---CC-
Q 013210 173 ----------SDHEMVNSAIVQGR----TKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFS-P---LV- 229 (447)
Q Consensus 173 ----------~d~~~l~~~i~~~~----t~lV~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~~-~---~~- 229 (447)
.|+++|++++ +++ +++|+++.|+||+ |.+.+ +++|.++|++||+++|.|+++. . +.
T Consensus 126 ~~~~~pf~gniD~e~Le~~I-~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~ 204 (431)
T cd00617 126 AQELIPFKGNIDVAKLEKLI-DEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIK 204 (431)
T ss_pred cccccCCCCCcCHHHHHHHh-CcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhh
Confidence 2789999999 543 8899999999998 88875 5678999999999999999962 1 10
Q ss_pred -----C---CccC------CCCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhh---hhhhhcCCCccHHHHHH
Q 013210 230 -----L---SPAR------LGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQ---GALMLLGPTMNPKVAFE 291 (447)
Q Consensus 230 -----~---~~~~------~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~---~~~~~~g~~~~~~~a~~ 291 (447)
+ ++.+ ...|.++.|++|..+.+ +||++++++ +++++++.... +.....|.+.....|.+
T Consensus 205 ~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~---~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A 281 (431)
T cd00617 205 EREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVN---IGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALA 281 (431)
T ss_pred cccccccCCCHHHHHHHhhccCCEEEEEeecCCCCc---cceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHH
Confidence 1 1111 13688888888877754 579999876 58888775321 11111222222333322
Q ss_pred -HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013210 292 -LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 328 (447)
Q Consensus 292 -~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~ 328 (447)
.+..... ...+++..+++++|.+.|++.|+.+..|.
T Consensus 282 ~gL~e~~~-~~~l~~~~~~r~~l~~~L~~~G~~v~~P~ 318 (431)
T cd00617 282 QGLREAVE-EDYLRHRVEQVRYLGDRLDEAGVPIVEPA 318 (431)
T ss_pred HHHHhccc-HHHHHHHHHHHHHHHHHHHHCCCCccCCC
Confidence 2222112 23455555567899999999988766554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-20 Score=184.46 Aligned_cols=283 Identities=14% Similarity=0.175 Sum_probs=183.5
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-CCC-CeEEEeCCCchhHHHHHHhhcCc---c-----cCeeE
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC-SSG-GHVVAARTLYGGTHALLTHFFPR---A-----CNITT 167 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~-~~g-d~Vi~~~~~y~~~~~~~~~~~~~---~-----~g~~~ 167 (447)
++...++.+.+++..+.+.++|++||++|+..+++... .+| ++|++.++.||+........... . ....+
T Consensus 70 ~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (377)
T PRK02936 70 NSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGF 149 (377)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCc
Confidence 45566777777777666789999999999999998542 244 57999988888654222111000 0 01134
Q ss_pred EEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cCCC--
Q 013210 168 TFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLG-- 236 (447)
Q Consensus 168 ~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-----~~~g-- 236 (447)
.+++.+|++++++.+ .+++++|++|+++++.|.+.+ +++|.++|++||+++|+||+|+++.... ...+
T Consensus 150 ~~~~~~d~~~l~~~~-~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~ 228 (377)
T PRK02936 150 THVPFNDIKALKEVM-NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLD 228 (377)
T ss_pred eEeCCCCHHHHHHhc-cCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCC
Confidence 556667999999999 778999999999999987753 8999999999999999999996553321 1123
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
.|+ .+++|.++ +|.++ |++++++++.+.+..... ..+..++.+.+.++..++..+. ....++++.++.+++.+.
T Consensus 229 ~di--~t~sK~l~-~G~~i-g~v~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~l~~~ 302 (377)
T PRK02936 229 PDI--VTVAKGLG-NGIPV-GAMIGKKELGTAFGPGSH-GSTFGGNPLAMAAAKEVLQVIK-QPSFLEEVQEKGEYFLQK 302 (377)
T ss_pred CcE--EEEccccc-CCCcc-EEEEEcHHHHhhccCCCC-CCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHH
Confidence 354 46999999 78888 899999998887753322 1122334444444444443331 123456677778888888
Q ss_pred HHhC-C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccc
Q 013210 317 MKKL-G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 394 (447)
Q Consensus 317 L~~~-~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~ 394 (447)
|++. + .....+ ..+.|.++++.++.. ...+.+.|... |++. ..+
T Consensus 303 L~~~~~~~~~~~~-----------------v~~~g~~~~i~~~~~--~~~~~~~l~~~---gv~v-~~~----------- 348 (377)
T PRK02936 303 LQEELEHLECVKN-----------------IRGKGLMIGIECTEE--VAPVIEQLREE---GLLV-LSA----------- 348 (377)
T ss_pred HHHHHhhCCcEEe-----------------EeecceEEEEEecch--HHHHHHHHHHC---CeEE-ecC-----------
Confidence 8763 1 111100 013467999999753 45666666642 3221 110
Q ss_pred ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 395 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 395 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
..+.|||++. ...+++.++.+.+.|++
T Consensus 349 ----------------g~~~lRi~p~-~~~~~~~i~~~i~~l~~ 375 (377)
T PRK02936 349 ----------------GPNVIRLLPP-LVVTKEELDQAVYLLKK 375 (377)
T ss_pred ----------------CCCEEEEECC-cccCHHHHHHHHHHHHH
Confidence 1368999986 55566666666666543
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=180.65 Aligned_cols=312 Identities=13% Similarity=0.100 Sum_probs=187.8
Q ss_pred cCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc----CCCC-eEEE
Q 013210 70 VMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC----SSGG-HVVA 143 (447)
Q Consensus 70 ~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~----~~gd-~Vi~ 143 (447)
.|++ +++.+.++. +++.......++...+...+++++|+++++. ..++++||++|+..++..+. .+|+ .||+
T Consensus 62 ~p~v~~A~~~~l~~-~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~ 139 (402)
T PRK07505 62 HPAIIEGAVDALKR-TGSLHLSSSRTRVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMV 139 (402)
T ss_pred CHHHHHHHHHHHHH-hCCCCCCccchhhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhcccCCCCCCEEE
Confidence 3444 566555542 3321111122234566789999999999998 77878889999998886532 2233 3666
Q ss_pred eCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeC
Q 013210 144 ARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 223 (447)
Q Consensus 144 ~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~ 223 (447)
.+..||+......... + .+.++.+++..|++++++++ +++++++++.+|+||+|.+.|+++|.++|+++|+++|+||
T Consensus 140 ~~~~~H~s~~~~~~~~-~-~~~~v~~~~~~d~~~l~~~~-~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DE 216 (402)
T PRK07505 140 FDKNAHASLNILKGIC-A-DETEVETIDHNDLDALEDIC-KTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDD 216 (402)
T ss_pred EchhhhHhHHhhhhhh-h-cCCeEEEeCCCCHHHHHHHH-hcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEEC
Confidence 6666655432221222 2 24578888888999999998 6677899999999999999999999999999999999999
Q ss_pred CCC--CCC-----CC--cc---CCCCeEEEeCCCccccCCCCeeEEEEE-cChHHHHHHHHHhhhhhhhcCCCccH--HH
Q 013210 224 TFS--PLV-----LS--PA---RLGADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNP--KV 288 (447)
Q Consensus 224 ~~~--~~~-----~~--~~---~~g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~--~~ 288 (447)
+|+ .+. +. .. ....++++.|++|.++++| |+++ .++++++.+....... ..+.++.+ .+
T Consensus 217 a~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G----g~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~a~a 290 (402)
T PRK07505 217 AHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG----GVIMLGDAEQIELILRYAGPL--AFSQSLNVAALG 290 (402)
T ss_pred cccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC----eEEEeCCHHHHHHHHHhCCCc--eeCCCCCHHHHH
Confidence 982 111 11 11 1234688889999999764 7765 5778888887654422 22222222 22
Q ss_pred HH-HHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCc-EEEEEeCCHHHHHH
Q 013210 289 AF-ELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG-LLCLDMETEEKANR 364 (447)
Q Consensus 289 a~-~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~-~~~~~l~~~~~~~~ 364 (447)
+. ..+. ..+.+.++.+++.++...+...+... + . +.+. +..+.+++...+..
T Consensus 291 a~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~---~------------------g~~~~i~~~~~~~~~~~~~ 346 (402)
T PRK07505 291 AILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE---Q---S------------------GSFLPIRLIYIGDEDTAIK 346 (402)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc---C---C------------------CCCCCEEEEEeCCHHHHHH
Confidence 22 2222 12223333333433333332222110 0 0 1222 34455554444677
Q ss_pred HHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 365 l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
+.+.|... | +.+.... .|.. +...+.|||+++ ...+++.++.+.++|+++..
T Consensus 347 ~~~~l~~~---G-i~v~~~~------~p~~--------------~~~~~~lRi~~~-~~~t~eei~~~~~~l~~~l~ 398 (402)
T PRK07505 347 AAKQLLDR---G-FYTSPVF------FPVV--------------AKGRAGLRIMFR-ASHTNDEIKRLCSLLKEILD 398 (402)
T ss_pred HHHHHHHC---C-CeEeeec------CCCC--------------CCCCceEEEecC-ccCCHHHHHHHHHHHHHHHH
Confidence 88887752 3 2332211 0110 012368999999 87888888888888876643
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-20 Score=180.44 Aligned_cols=306 Identities=17% Similarity=0.177 Sum_probs=203.2
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+.++++|+++++++|.+.++.|+|||.|+.+++.++ +++||+|+++..+|.++...+. ..|.+++++|++
T Consensus 24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~-----~~G~~pv~~Di~~~~ 98 (363)
T PF01041_consen 24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAIL-----WAGAEPVFVDIDPET 98 (363)
T ss_dssp SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHH-----HTT-EEEEE-BETTT
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHH-----HhccEEEEEeccCCc
Confidence 5788999999999999999999999999999999987 6789999999999999988873 379999999876
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCCccCC--CCeEEEeCC--C
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARL--GADVVVHSI--S 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~~~~~--g~di~~~S~--s 245 (447)
|++++++++ +++|++|++.+ ..|...|+++|.++|+++|+++|.|++|+. ..++.... --|+.++|| +
T Consensus 99 ~~id~~~~~~~i-~~~t~ai~~~h---~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~ 174 (363)
T PF01041_consen 99 LNIDPEALEKAI-TPKTKAILVVH---LFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPT 174 (363)
T ss_dssp SSB-HHHHHHHH-HTTEEEEEEE----GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTT
T ss_pred CCcCHHHHHHHh-ccCccEEEEec---CCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCC
Confidence 899999999 88999998754 468888999999999999999999999933 22322211 248999998 5
Q ss_pred ccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh-------------hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 246 KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM-------------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 246 K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~-------------~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
|.+.. |. ||+++. ++++.++++.++..+.. .....++...|..++..++.+.+++++.+++.+
T Consensus 175 K~i~~-ge--GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~ 251 (363)
T PF01041_consen 175 KIITT-GE--GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQ 251 (363)
T ss_dssp SSS-S-SS---EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCcC-CC--CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99863 43 588866 56778888776653211 112346667777777788889999999999999
Q ss_pred HHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccCcccc
Q 013210 312 IFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETL 388 (447)
Q Consensus 312 ~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~~~s~ 388 (447)
.+.+.|...+. ...... +.... .....+.+.+++. .....+++.|...+ +.+.......+
T Consensus 252 ~y~~~L~~~~~~~~~~~~-~~~~~------------~~~~~f~i~~~~~~~~~rd~l~~~L~~~G----I~~~~~~~~pl 314 (363)
T PF01041_consen 252 RYREALAGIPGIKPPPIP-DGAER------------SSYYRFPIRLPDEALADRDELVEALRARG----IETRPHYPKPL 314 (363)
T ss_dssp HHHHHHTTGTTEEEEGCG-TTTEE------------BCESSEEEEETCCGCSTHHHHHHHHHHTT----BEEBCSTSSCG
T ss_pred HHHHHHhcCCCccccccc-ccccc------------cccccccccccccccchHHHHHHHHHHCC----CcccccccCch
Confidence 99999998865 222211 11000 0112556666642 12567788887632 34443331112
Q ss_pred ccccccccC-----CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 389 MSCSGSSTS-----SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 389 ~~~~a~~~~-----~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
-..|..... ...+..+.. ....|.+-+. ..-+++.++.+.++|+
T Consensus 315 ~~~~~~~~~~~~~~~~~P~ae~l----~~r~l~LP~~-~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 315 HRQPVYRSYPYYAPGDLPNAERL----SQRLLSLPIH-PRLTEEDVDYIAEAIR 363 (363)
T ss_dssp GGSGGGTTGEEEETSSSHHHHHH----HHHEEEEEHS-TTSCHHHHHHHHHHHH
T ss_pred hhhHHHHhcCccccCCCHHHHHH----HhCeEECcCC-CCCCHHHHHHHhhccC
Confidence 111221111 112222211 2356888888 7777888888887764
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=182.45 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=192.5
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc---------CC-CCeEEEeCCCchhH-HHHHHhhcC----c
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC---------SS-GGHVVAARTLYGGT-HALLTHFFP----R 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~---------~~-gd~Vi~~~~~y~~~-~~~~~~~~~----~ 161 (447)
..+...+++++|+++++.+.++|++||++|+..+++.+. .+ .++|+.....||+. ...+..... .
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~ 156 (401)
T TIGR01885 77 YNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRT 156 (401)
T ss_pred CCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccc
Confidence 456678999999999998899999999999999998742 12 35788888888764 343321000 0
Q ss_pred ccC---eeEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013210 162 ACN---ITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS- 231 (447)
Q Consensus 162 ~~g---~~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~- 231 (447)
..+ ..+..++..|+++|++++++ +++.+|++|++++++|.+.| +++|.++|++||+++|+||+|+++...
T Consensus 157 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G 236 (401)
T TIGR01885 157 NFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG 236 (401)
T ss_pred ccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc
Confidence 011 23455667789999988842 56789999999999999987 999999999999999999998554321
Q ss_pred ------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHH
Q 013210 232 ------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 232 ------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
......|+++ ++|.+++.+.++ |+++.++++++.+..... ..+..++++.+.++..++..++. ....++
T Consensus 237 ~~~~~~~~~~~~di~~--~gK~l~~g~~~i-g~v~~~~~i~~~~~~~~~-~~t~~~~p~~~~aa~a~L~~i~~-~~l~~~ 311 (401)
T TIGR01885 237 KLLCVDHENVKPDIVL--LGKALSGGVYPV-SAVLADDDVMLTIKPGEH-GSTYGGNPLACAVAVAALEVLEE-EKLAEN 311 (401)
T ss_pred hhhHHhhcCCCCCEEE--eeccccCCCCCc-EEEEEcHHHHhhccCCCC-CCCCCCCHHHHHHHHHHHHHHHh-ccHHHH
Confidence 1223467665 679999766888 888888888877754222 11233444444344333333321 123355
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH---HHHHHHHHHhhcccccccccccc
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE---EKANRLMNYLQNYAQFGFMAVSL 382 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~---~~~~~l~~~l~~~~~~g~~~vs~ 382 (447)
..++.+++.+.|++++..+.. ...|.|.++.+.++.. ..+..+...|... |+ .++.
T Consensus 312 ~~~~~~~~~~~L~~l~~~~~~-----------------~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~---Gv-~v~~ 370 (401)
T TIGR01885 312 AEKLGEIFRDQLKKLPKPIIT-----------------EVRGRGLLNAIVIDESKTGRTAWDLCLKLKEK---GL-LAKP 370 (401)
T ss_pred HHHHHHHHHHHHHhccCCcee-----------------EEeecCeeEEEEeccCcchhHHHHHHHHHHhC---CE-EEEe
Confidence 667788888888876432210 0014677888888643 2467788887652 32 2211
Q ss_pred cCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 383 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 383 G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+ .++.+||++. ...+++.|+.+.++|++.
T Consensus 371 ~---------------------------~~~~lRi~p~-l~~t~~~i~~~l~~l~~~ 399 (401)
T TIGR01885 371 T---------------------------HGNIIRLAPP-LVITEEQLDEGLEIIKKV 399 (401)
T ss_pred c---------------------------CCCEEEEeCC-ccCCHHHHHHHHHHHHHH
Confidence 1 1467999998 777777777777777653
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-19 Score=176.94 Aligned_cols=350 Identities=16% Similarity=0.189 Sum_probs=214.2
Q ss_pred CCCCchhhHhhh-cCCCCCCCCccccccccccccccCCH-HHHHHhhcCCCCC--CCCCccccCCCCchHH-HHHHHHHH
Q 013210 36 AAWEDPAAALAS-ARHEFGEHGGVNMSIEASATFTVMEP-ETMRRMFAGELGP--DRDFFIYSRHFNPTVL-NLSRQMAA 110 (447)
Q Consensus 36 ~~~~~~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~-~~~~~~~~~~~~~--~~~~~~~~r~~~~~~~-~l~~~ia~ 110 (447)
++..||+..-+- .... .+.. .-.+.+|.+++.+.+ +.+-..+.++|.. |...|+-|-..-..++ .+.++..+
T Consensus 30 l~~~d~~~~~~~~~e~~-rq~~--~l~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~ 106 (493)
T PRK13580 30 ILHVEPRIAEAIRQELA-DQRS--SLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKE 106 (493)
T ss_pred HHhhCHHHHHHHHHHHH-HHhc--CceEecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHH
Confidence 455677554333 3222 1222 335677888888776 6666666665532 2222322222222233 34556667
Q ss_pred HhCCCeEE-EeCChHHHHHHHHHHhcCC-------------------------------CCeEEEeCCCchhHHHHHHhh
Q 013210 111 LEGTEAAY-CTASGMSAISSVLMQLCSS-------------------------------GGHVVAARTLYGGTHALLTHF 158 (447)
Q Consensus 111 l~g~~~~~-~tsggt~A~~~al~~l~~~-------------------------------gd~Vi~~~~~y~~~~~~~~~~ 158 (447)
++|++.+- =--||+.||..++.++++| ||+|+..+..+++....- +
T Consensus 107 lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg--~ 184 (493)
T PRK13580 107 LFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHG--F 184 (493)
T ss_pred HhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecC--c
Confidence 88988753 3469999999999999876 799998887775543211 0
Q ss_pred cCcccC--eeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCC-
Q 013210 159 FPRACN--ITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL- 228 (447)
Q Consensus 159 ~~~~~g--~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~- 228 (447)
.....+ ..+..++.+ |.+++++.+ ++++++|++.+.+|- +.+.|+++|.++|+++|+++++|++| .++
T Consensus 185 ~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~-~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gli 262 (493)
T PRK13580 185 RPNISGKMFHQRSYGVDPDTGLLDYDEIAALA-REFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLV 262 (493)
T ss_pred ccchhhheeeeEecccCcccCccCHHHHHHHH-hhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhcee
Confidence 000011 233333222 889999999 778888888888887 55889999999999999999999999 333
Q ss_pred CC-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHH--HHccC--C
Q 013210 229 VL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE--LSERI--P 297 (447)
Q Consensus 229 ~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~--~~~~~--~ 297 (447)
.. ++. .++|++++|+||++.||. ||++++++++++.+..... + ..|+...+..+.. ++..+ .
T Consensus 263 gg~~~~~~~~~~-~~~D~vtgT~hKaL~GP~---GG~I~~~~~l~~~L~~a~P-~--i~gg~l~p~iAA~avAl~e~~~~ 335 (493)
T PRK13580 263 AGKVFTGDEDPV-PHADIVTTTTHKTLRGPR---GGLVLAKKEYADAVDKGCP-L--VLGGPLPHVMAAKAVALAEARTP 335 (493)
T ss_pred ccccchhhcCCC-CCCcEEEeCChhhccCCC---eEEEEecHHHHHHHhhCCC-c--ccCCCccHHHHHHHHHHHHHhCc
Confidence 21 222 278999999999995442 5999999998888854332 1 3344444333322 22222 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH-HHHHHHHhhcccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK-ANRLMNYLQNYAQFG 376 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~-~~~l~~~l~~~~~~g 376 (447)
...++.+++.++.++|++.|++.|+.+...+ .+ ..++.+.+.+... ...+.+.|... |
T Consensus 336 ef~~y~~~l~~Na~~La~~L~~~G~~vv~gg-Td-----------------shIV~V~lg~~~~~g~~a~~~L~e~---G 394 (493)
T PRK13580 336 EFQKYAQQVVDNARALAEGFLKRGARLVTGG-TD-----------------NHLVLIDVTSFGLTGRQAESALLDA---G 394 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-CC-----------------CCEEEEEeCCHHHHHHHHHHHHHHC---C
Confidence 2355778899999999999999988654322 11 2399999975542 33455566652 2
Q ss_pred cccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHHh
Q 013210 377 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 377 ~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~~ 439 (447)
|.++ .+..|..... ......|||++. . ...+++++.+.++|.++
T Consensus 395 -I~vn------~i~~Ptvp~g-----------~~~~srLRIg~~-A~ttrg~teedi~~iad~l~~~ 442 (493)
T PRK13580 395 -IVTN------RNSIPSDPNG-----------AWYTSGIRLGTP-ALTTLGMGSDEMDEVAELIVKV 442 (493)
T ss_pred -eEEc------cccCCCCCCC-----------CCCCceEEeccc-hhhhcCCCHHHHHHHHHHHHHH
Confidence 2222 1223433210 012467999987 5 22355566666655544
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-20 Score=177.89 Aligned_cols=246 Identities=15% Similarity=0.188 Sum_probs=169.3
Q ss_pred ccccCCCCchHHHHHHHHHHHhCC-CeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhc--------
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGT-EAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF-------- 159 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~-~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~-------- 159 (447)
..||.-.... -++.+.|.++.+. |.+-|++|||||+..+++... ...|+|+..+.+||+..+.+..-.
T Consensus 86 ~~fg~Pte~E-i~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g 164 (432)
T COG0001 86 LSFGAPTELE-VELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLG 164 (432)
T ss_pred CCCCCCCHHH-HHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCC
Confidence 3455433323 3455666666665 889999999999999998542 335899999999999888773210
Q ss_pred -CcccCe------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCC
Q 013210 160 -PRACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 160 -~~~~g~------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~ 226 (447)
+...|+ .+..++.+|++.++++++. ++..+|++|.+....|.|.| +++|.++|+++|+++|.||+.+
T Consensus 165 ~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViT 244 (432)
T COG0001 165 SPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVIT 244 (432)
T ss_pred CCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchh
Confidence 111222 2445667799999999854 47899999999888899876 8899999999999999999997
Q ss_pred CCCCCcc----CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHH
Q 013210 227 PLVLSPA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG 300 (447)
Q Consensus 227 ~~~~~~~----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~ 300 (447)
++..... .+|+...+.++.|.+| .|.++ |++.+++++++.+..... +..+..|+.++..+..+.+..+....
T Consensus 245 GFR~~~gGaq~~~gi~PDlttlGKiIG-GGlP~-ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~ 322 (432)
T COG0001 245 GFRVALGGAQGYYGVEPDLTTLGKIIG-GGLPI-GAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEE 322 (432)
T ss_pred hcccCCcccccccCcCcchhhhhhhhc-CCcce-eeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcc
Confidence 7765422 2255555556999999 57888 999999999997754321 23345666666666555554443322
Q ss_pred HHHHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 301 LRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
...+++.++.++|.+.|++ ++..+... +.|+++.|.|..
T Consensus 323 ~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~-------------------~~gsm~~i~F~~ 365 (432)
T COG0001 323 GVYERLDALGERLAEGLRAAAERHGIPLTVN-------------------RVGSMFGIFFTE 365 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-------------------eecceEEEEecC
Confidence 2455666666666666654 44432211 367788888863
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=181.16 Aligned_cols=159 Identities=17% Similarity=0.216 Sum_probs=128.7
Q ss_pred CCchHHHHHHHHHHHhCCCeEEE-eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC---
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYC-TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--- 172 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~-tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~--- 172 (447)
....+.++++.+|+++|++.++| |+|+++++.+++.+++++||+|+++.++|.++...+. ..|.++.+++.
T Consensus 57 ~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~-----~~g~~~~~v~~~~~ 131 (294)
T cd00615 57 PTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLV-----LSGAVPVYLKPERN 131 (294)
T ss_pred CChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHH-----HCCCEEEEecCccC
Confidence 34567899999999999988765 9999999999999999999999999999999887763 25777776643
Q ss_pred --------CCHHHHHHhhcc-CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCC------CccCCC
Q 013210 173 --------SDHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVL------SPARLG 236 (447)
Q Consensus 173 --------~d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~------~~~~~g 236 (447)
.|++++++++++ +++++|++++| |++|.+.|+++|+++|+++|+++|+|++|+ .+.+ +....+
T Consensus 132 ~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~ 210 (294)
T cd00615 132 PYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred cccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcC
Confidence 278999998843 57899999988 789999999999999999999999999994 3322 223458
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcCh
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPA 263 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~ 263 (447)
+|+++.|+||++++. +.||++..+.
T Consensus 211 ~div~~S~hK~l~g~--~~~~~l~~~~ 235 (294)
T cd00615 211 ADIVVQSTHKTLPAL--TQGSMIHVKG 235 (294)
T ss_pred CcEEEEchhcccchH--hHHHHHHhCC
Confidence 999999999998643 3445654443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=181.93 Aligned_cols=290 Identities=15% Similarity=0.207 Sum_probs=185.0
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC---------CCC-eEEEeCCCchhHHHHHHhh-------
Q 013210 96 HFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS---------SGG-HVVAARTLYGGTHALLTHF------- 158 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~---------~gd-~Vi~~~~~y~~~~~~~~~~------- 158 (447)
..++...++.++|+++.+.+.++|++||++|+..|++.... +++ .|+.....||+........
T Consensus 114 ~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~ 193 (474)
T PLN02624 114 FYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEAT 193 (474)
T ss_pred cCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCcccc
Confidence 45677788999999999888999999999999999974432 123 5777877787763322111
Q ss_pred ---cCcccCeeEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCC
Q 013210 159 ---FPRACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV 229 (447)
Q Consensus 159 ---~~~~~g~~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~ 229 (447)
.+. ...+.+++..|++.+++.++. +++++|++|+++|++|.+.| +++|.++|++||+++|+||+|+++.
T Consensus 194 ~~~~~~--~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~G 271 (474)
T PLN02624 194 RGFGPL--LPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLA 271 (474)
T ss_pred ccCCCC--CCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcC
Confidence 111 112455677789999998832 56889999999999999987 9999999999999999999996553
Q ss_pred CCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHH
Q 013210 230 LSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 302 (447)
Q Consensus 230 ~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~ 302 (447)
... .....|+++ ++|.+|+++.++ |+++.++++++.+..... ..+..++.+.+.++.+.+..++. ...
T Consensus 272 rtG~~~a~~~~~i~pDiv~--lsK~lggG~~pi-gav~~~~~i~~~~~~~~~-~~T~~g~pl~~aaa~aaLe~l~~-~~l 346 (474)
T PLN02624 272 RTGKMLACDWEEVRPDVVI--LGKALGGGVIPV-SAVLADKDVMLCIKPGEH-GSTFGGNPLASAVAMAALQVVQD-EKL 346 (474)
T ss_pred cCcchhhHHhcCCCCCEEE--ecccccCCCCcc-eeeeecHHHHhHhccCCc-CCCCCCCHHHHHHHHHHHHHHHh-chH
Confidence 211 122456666 689999877888 888888888776653322 12223444444444444333221 123
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCC-CCCCchhHHHHHHhccCCCcCcEEEEEeCC----HHHHHHHHHHhhccccccc
Q 013210 303 MKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHHELLKSMANKEYGFGGLLCLDMET----EEKANRLMNYLQNYAQFGF 377 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~~~v~~p~-~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~----~~~~~~l~~~l~~~~~~g~ 377 (447)
.++..++.+++.+.|+++..+. |. +. ...|.|.++.+.+.. ...+..+.+.|.. .|+
T Consensus 347 ~~~~~~~~~~l~~~L~~l~~~~--~~~i~-------------~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e---~GV 408 (474)
T PLN02624 347 AERSAKLGQELRDQLQKIQKQF--PKLIK-------------EVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKE---RGL 408 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--CCceE-------------EEEeeEEEEEEEecCCCcChHHHHHHHHHHHh---CCe
Confidence 3344555666666665532110 10 00 011467788888863 2345677777765 232
Q ss_pred ccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 378 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 378 ~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+..+ ..+.|||++. ...+++.++.+.+.|+++
T Consensus 409 -~v~p~---------------------------~~~~lR~~p~-l~~t~e~id~~l~~L~~~ 441 (474)
T PLN02624 409 -LAKPT---------------------------HDTIIRLAPP-LSISEDELQECSKALSDV 441 (474)
T ss_pred -EEecC---------------------------CCCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 22111 1467999987 656666666655555443
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=179.50 Aligned_cols=314 Identities=11% Similarity=0.059 Sum_probs=194.3
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCC-CCccccCCCC---chHHHHHHHHHHHhCC---CeEEEeCC-hHHHHHHHHHHh
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDR-DFFIYSRHFN---PTVLNLSRQMAALEGT---EAAYCTAS-GMSAISSVLMQL 134 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~-~~~~~~r~~~---~~~~~l~~~ia~l~g~---~~~~~tsg-gt~A~~~al~~l 134 (447)
.+++...+++ +++...+.. ++|+. +.|..+.... ..++++|+.+++++|+ +.++||+| ||+|+++++.++
T Consensus 5 pGp~~~p~~V~~a~~~~~~~-~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l 83 (355)
T cd00611 5 AGPAALPEEVLEQAQKELLD-FNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNL 83 (355)
T ss_pred CCCCCCCHHHHHHHHHHHhh-cccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc
Confidence 3445555566 667666643 23433 3455553223 6688999999999996 23888877 999999999999
Q ss_pred cC---CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC------C-HHHHHHhhccCCceEEEEEcCCCCCccccC
Q 013210 135 CS---SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------D-HEMVNSAIVQGRTKVLYFESISNPTLAVAN 204 (447)
Q Consensus 135 ~~---~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~------d-~~~l~~~i~~~~t~lV~i~~~~NptG~v~~ 204 (447)
+. +|++|++....+. .. ....+ .|+++++++.+ + ++..+..+ ++++++|.+.+..|.||.+.+
T Consensus 84 ~~~~~~~~~i~~g~~~~~-~~----~~a~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~lV~~~h~~t~tG~~~~ 156 (355)
T cd00611 84 LGDKGTADYVVTGAWSAK-AA----KEAKR-YGGVVVIVAAKEEGKYTKIPDVETWDL-APDAAYVHYCSNETIHGVEFD 156 (355)
T ss_pred CCCCCeEEEEECCHHHHH-HH----HHHHh-cCCCcEEEecccccCCCCCCCHhhcCC-CCCCCEEEEeCCcccccEEcc
Confidence 77 4556655322211 11 22234 67777777643 3 23333445 678999999999999999843
Q ss_pred HHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--------
Q 013210 205 IPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-------- 274 (447)
Q Consensus 205 l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-------- 274 (447)
++++.||+++++|.++ +..+++..+++ +++.|.+|++|++| + |+++.+++.++++.....
T Consensus 157 -----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lGP~G--~-g~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T cd00611 157 -----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLGPAG--V-TVVIVRKDLLGKARKITPSMLNYKTH 226 (355)
T ss_pred -----eecccCCCeEEEEccccccCCCCCHHHhC--EEEeecccccCCCc--e-EEEEECHHHHhhcccCCCCcccHHHH
Confidence 4455699999999999 66677776665 45566999999888 4 888888888766543110
Q ss_pred -hhhhhcCCCccHHHHHH---HHccC--C-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCC
Q 013210 275 -GALMLLGPTMNPKVAFE---LSERI--P-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 275 -~~~~~~g~~~~~~~a~~---~~~~~--~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
......+ +++....+. ++..+ . .+..+.++.+++++++.+.|++++. +..+.. .+.. .
T Consensus 227 ~~~~~~~~-Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~g-l~~~~~--~~~~-----------r 291 (355)
T cd00611 227 ADNNSLYN-TPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNG-FYRGPV--DKRA-----------R 291 (355)
T ss_pred HhcCCCCC-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcc-ccccCC--CHHH-----------c
Confidence 0000122 222211111 22211 2 3556677789999999999998832 210110 0110 1
Q ss_pred cCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013210 348 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 427 (447)
Q Consensus 348 ~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 427 (447)
.+.+++|.+++......+.+.+.. .|++ ...| . + ..+.+|+|++ ..++++
T Consensus 292 s~~vvsf~~~~~~l~~~~~~~~~r---~G~~-~~~~----------~--------------~-~~g~vR~S~~-~~nt~e 341 (355)
T cd00611 292 SRMNVPFRLGKEELEKEFLKEAEA---AGMI-GLKG----------H--------------R-SVGGIRASIY-NALSLE 341 (355)
T ss_pred CceEEEEEcCChhhhHHHHHHHHH---CCCc-ccCC----------C--------------c-ccCeEEEEcc-CCCCHH
Confidence 234799998764111333333322 2321 2222 0 0 1368999999 999999
Q ss_pred HHHHHHHHHHHhh
Q 013210 428 RWSQFEKALSRMQ 440 (447)
Q Consensus 428 ~i~~l~~al~~~~ 440 (447)
+|+.|.++|++++
T Consensus 342 di~~l~~al~~~~ 354 (355)
T cd00611 342 GVQALADFMKEFQ 354 (355)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-19 Score=181.42 Aligned_cols=288 Identities=16% Similarity=0.144 Sum_probs=183.9
Q ss_pred chHHHHHHHHHHHhCCCeEEEe-CChHHHHHHH---HH-HhcCCCC----eEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 99 PTVLNLSRQMAALEGTEAAYCT-ASGMSAISSV---LM-QLCSSGG----HVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~~~t-sggt~A~~~a---l~-~l~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
..+.++++.+++++|.+++.++ ++|+.+...+ ++ .+..+|| +|+++.+.|+.+...+. ..|++++.
T Consensus 113 el~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~-----~~G~~vv~ 187 (481)
T PRK04366 113 ELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAA-----MAGFKVVE 187 (481)
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHH-----HcCCEEEE
Confidence 4567888999999998775444 4555444432 22 2345665 99999999999987762 26888888
Q ss_pred eCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccc-cCHHHHHHHHHhcCCEEEEeCCCC-C-C-CCCccCCCCeEE
Q 013210 170 VDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDNTFS-P-L-VLSPARLGADVV 240 (447)
Q Consensus 170 v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v-~~l~~I~~la~~~gi~livD~~~~-~-~-~~~~~~~g~di~ 240 (447)
++.+ |+++|++++ +++|++|++++|| ++|.+ .|+++|+++|+++|+++|+|+++. . + ..++.++|+|++
T Consensus 188 v~~~~~~~~D~e~L~~~i-~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~ 265 (481)
T PRK04366 188 IPSNEDGLVDLEALKAAV-GEDTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVV 265 (481)
T ss_pred eecCCCCCcCHHHHHhhc-ccCCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEE
Confidence 7663 889999999 7789999999987 99987 589999999999999999999982 2 2 246778899999
Q ss_pred EeCCCccccCC---CCeeEEEEEcChHHHHHHHHHh---h--hhh----------h---hcCCCccHHHHHHHHc--cCC
Q 013210 241 VHSISKFISGG---ADIIAGAVCGPANLVNSMMDLH---Q--GAL----------M---LLGPTMNPKVAFELSE--RIP 297 (447)
Q Consensus 241 ~~S~sK~~g~~---g~~igG~l~~~~~~~~~l~~~~---~--~~~----------~---~~g~~~~~~~a~~~~~--~~~ 297 (447)
++|.||++++| |..-+|+++.++++.+.+.... . .+. + ..+.......++..+. +.+
T Consensus 266 ~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~ 345 (481)
T PRK04366 266 HLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAE 345 (481)
T ss_pred EEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHH
Confidence 99999998744 2222388888777666542100 0 000 0 0001111122222222 223
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe-----CCHHHHHHHHHHhhcc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM-----ETEEKANRLMNYLQNY 372 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l-----~~~~~~~~l~~~l~~~ 372 (447)
.+.+..++...+++++.+.|+++ ..+.++. |. -..+.|.. .+. ....+.++|...
T Consensus 346 Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~----~~--------------~~~~~~~~~~~~~~g~-~~~~v~~~L~~~ 405 (481)
T PRK04366 346 GLREVSEDAVLNANYLKARLKDI-YDLPYDR----PC--------------MHEFVLSGKKLKETGV-RTLDIAKRLLDY 405 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhh-CcccCCC----Ce--------------eEEEEEECccccccCC-CHHHHHHHHHHC
Confidence 34445566778889999999876 3333221 10 00222322 121 356777777752
Q ss_pred cccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 373 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 373 ~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
|+. .+. ...| ....+.+|+|++ ..+++++|+.|.++|.++.
T Consensus 406 ---Gi~---~~~----~~~p----------------~~~~~~l~is~~-e~~t~edid~l~~~l~~i~ 446 (481)
T PRK04366 406 ---GFH---PPT----IYFP----------------LIVPEALMIEPT-ETESKETLDAFIAAMKQIA 446 (481)
T ss_pred ---Ccc---CCc----cccc----------------cccCCeEEEccc-CCCCHHHHHHHHHHHHHHH
Confidence 321 110 0001 112468999999 8888888888888877664
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-18 Score=172.83 Aligned_cols=211 Identities=16% Similarity=0.162 Sum_probs=160.0
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh---------cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL---------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l---------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
.+...++|+++|+++|.+.+++++||++|+.+++.++ +++||+||++.++|.++...+. ..|.+++
T Consensus 62 G~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~-----~~G~~pv 136 (438)
T PRK15407 62 GRFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII-----QNGLVPV 136 (438)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH-----HcCCEEE
Confidence 3557899999999999999999999999999999876 3789999999999998887763 2578888
Q ss_pred EeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCcc---CCCCe
Q 013210 169 FVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPA---RLGAD 238 (447)
Q Consensus 169 ~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~---~~g~d 238 (447)
+++.+ |++++++++ +++|++|++++ +.|...++++|.++|+++|+++|+|++|+ +..++.. .+| |
T Consensus 137 ~vdvd~~~~~id~~~le~~i-~~~tkaVi~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d 211 (438)
T PRK15407 137 FVDVELPTYNIDASLLEAAV-SPKTKAIMIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-D 211 (438)
T ss_pred EEecCCCcCCcCHHHHHHHc-CcCCeEEEEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-c
Confidence 77653 789999999 78999999876 46778899999999999999999999993 2223322 234 8
Q ss_pred EEEeCCC--ccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh---------------------------------hcC-
Q 013210 239 VVVHSIS--KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM---------------------------------LLG- 281 (447)
Q Consensus 239 i~~~S~s--K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~---------------------------------~~g- 281 (447)
+.++||+ |.+.. |. ||+++. ++++.+.++..+..+.. ..|
T Consensus 212 ~~~fSf~~~k~~~~-ge--GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 288 (438)
T PRK15407 212 IATLSFYPAHHITM-GE--GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGY 288 (438)
T ss_pred eEEEeCCCCCCccc-cC--ceEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccccccccccc
Confidence 8888886 55542 32 588766 55666665544331100 012
Q ss_pred -CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 282 -PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 282 -~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
..++...|+..+..++.+.+++++.+++++++.+.|...+
T Consensus 289 n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~ 329 (438)
T PRK15407 289 NLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLE 329 (438)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 2345566777777888888888889999999999997764
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-18 Score=163.58 Aligned_cols=301 Identities=16% Similarity=0.184 Sum_probs=201.0
Q ss_pred ccccCCCCchHHHHHHHHHHHhC----C-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCc
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEG----T-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR 161 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g----~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~ 161 (447)
..||..... -++...+.+..+ . -+++.|+|.|.++..+++.+++.||+|++...+|.+....+ +
T Consensus 94 lQYg~s~G~--peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~-----~ 166 (472)
T KOG0634|consen 94 LQYGQSSGI--PELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSM-----E 166 (472)
T ss_pred hccccccCc--HHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhc-----c
Confidence 556654332 355556665544 1 25999999999999999999999999999999999988777 3
Q ss_pred ccCeeEEEeCCC----CHHHHHHhhcc--------CCceEEE-EEcCCCCCccccCH---HHHHHHHHhcCCEEEEeCCC
Q 013210 162 ACNITTTFVDIS----DHEMVNSAIVQ--------GRTKVLY-FESISNPTLAVANI---PELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 162 ~~g~~~~~v~~~----d~~~l~~~i~~--------~~t~lV~-i~~~~NptG~v~~l---~~I~~la~~~gi~livD~~~ 225 (447)
..|+++..|+.+ ++|.|++.+.+ ++.++++ |.+-+||||...++ ++|.++|++|++++|+|+.|
T Consensus 167 a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpY 246 (472)
T KOG0634|consen 167 ALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPY 246 (472)
T ss_pred ccCceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCcc
Confidence 368787777766 78888887632 3355555 46789999999875 49999999999999999998
Q ss_pred CCCCCC-------------------------ccC---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh
Q 013210 226 SPLVLS-------------------------PAR---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL 277 (447)
Q Consensus 226 ~~~~~~-------------------------~~~---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~ 277 (447)
.-+.+. +.. .|.++-..||||.++ ||.|+ ||+.+++-+++++..... ..
T Consensus 247 y~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRl-G~it~~~~~l~ril~~ae-~~ 323 (472)
T KOG0634|consen 247 YFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRL-GWITGNSLFLKRILDLAE-VA 323 (472)
T ss_pred ceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-Cccee-EEeecCHHHHHHHhhhcc-ee
Confidence 333211 111 267899999999999 89999 999999988888766544 22
Q ss_pred hhcCCCccHHHHHHHHcc------CCcHHHHHHHHHHHHHHHHHHHHhC-CC---eeeCCCCCCCchhHHHHHHhccCCC
Q 013210 278 MLLGPTMNPKVAFELSER------IPHLGLRMKEHCHRALIFARRMKKL-GL---KVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~------~~~l~~~~~~~~~~~~~l~~~L~~~-~~---~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
+...+..++....+.+.. ++++......+..++..+...|.+. +. ++..|.
T Consensus 324 t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~------------------- 384 (472)
T KOG0634|consen 324 TSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPK------------------- 384 (472)
T ss_pred ecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCC-------------------
Confidence 233444555544443332 2445566667888999999999774 33 344332
Q ss_pred cCcEEEEEeC--------CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe
Q 013210 348 FGGLLCLDME--------TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 419 (447)
Q Consensus 348 ~g~~~~~~l~--------~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~ 419 (447)
.|.++|++++ +..+++.++..... .+|+ -+-.|...... |..+ -+.-++|+|+
T Consensus 385 aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~v--k~gV-~~v~G~~F~v~--p~~s--------------~~kiffRls~ 445 (472)
T KOG0634|consen 385 AGMFIWVEIPYINFDTKKSINQIEEIIFIKAV--KNGV-KLVCGSWFMVD--PESS--------------WSKIFFRLSI 445 (472)
T ss_pred cceEEEEEecccccccccchHHHHHHHHHHHH--HCCe-EEecCceeEEc--CccC--------------CCcceEEEEe
Confidence 6779999995 33334554443332 2342 33334322111 1111 0124899999
Q ss_pred CCCCCHHHHHHHHHHHHHHhh
Q 013210 420 GYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 420 g~~~~~~~~i~~l~~al~~~~ 440 (447)
. ..+.+++.+.+++.-..++
T Consensus 446 a-~a~~e~l~~g~~rf~~~ik 465 (472)
T KOG0634|consen 446 A-FAEPEKLDEGIERFGSVIK 465 (472)
T ss_pred e-cCCHHHHHHHHHHHHHHHH
Confidence 9 8777766555544433333
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=190.92 Aligned_cols=294 Identities=17% Similarity=0.185 Sum_probs=201.1
Q ss_pred chHHHHHHHHHHHhCCCeEEEeCChH----HHHHHHHHHhcCC-CC----eEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 99 PTVLNLSRQMAALEGTEAAYCTASGM----SAISSVLMQLCSS-GG----HVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~~~tsggt----~A~~~al~~l~~~-gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
..+.++++.+++++|.+.+.|+++++ +|++++++++.++ || +|+++..+|+++...+. ..|+++++
T Consensus 568 ~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~-----~~G~~vv~ 642 (993)
T PLN02414 568 EMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA-----MCGMKIVV 642 (993)
T ss_pred HHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH-----HCCCEEEE
Confidence 34579999999999999999999998 9999999999866 77 89999999999988873 25889999
Q ss_pred eCCC-----CHHHHHHhhcc--CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CC-CCCCccCCCCeE
Q 013210 170 VDIS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SP-LVLSPARLGADV 239 (447)
Q Consensus 170 v~~~-----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~-~~~~~~~~g~di 239 (447)
++.+ |+++|++++.. ++|++|++.+|+|-+|.+.|+++|+++||++|+++++|.++ +. ...+|.++|+|+
T Consensus 643 v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~ 722 (993)
T PLN02414 643 VGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADV 722 (993)
T ss_pred eccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCE
Confidence 8864 89999999932 47899999999999999999999999999999999999999 33 345677899999
Q ss_pred EEeCCCccccCC---C-CeeEEEEEcChHHHHHHHHHh--h-h------hhhhcCCC--------ccHHHHHHH--HccC
Q 013210 240 VVHSISKFISGG---A-DIIAGAVCGPANLVNSMMDLH--Q-G------ALMLLGPT--------MNPKVAFEL--SERI 296 (447)
Q Consensus 240 ~~~S~sK~~g~~---g-~~igG~l~~~~~~~~~l~~~~--~-~------~~~~~g~~--------~~~~~a~~~--~~~~ 296 (447)
+++|.||++++| | .-+ |+++.++++...+-... . . .....|+. .....++.. ..+.
T Consensus 723 ~~~s~HK~f~~P~G~GGPg~-G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~ 801 (993)
T PLN02414 723 CHLNLHKTFCIPHGGGGPGM-GPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGS 801 (993)
T ss_pred EEecCCccCCcCcccCCCCe-eeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCH
Confidence 999999966522 1 114 88888877665442110 0 0 00011221 111122222 2233
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-eCC--HHHHHHHHHHhhccc
Q 013210 297 PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-MET--EEKANRLMNYLQNYA 373 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~-l~~--~~~~~~l~~~l~~~~ 373 (447)
+.+.+..++...+++++++.|.+ +..+.+++-...--| -.++.+. ++. ...+..+.++|..
T Consensus 802 ~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~~~h-------------Efv~~~~~l~~~~g~~~~di~krL~d-- 865 (993)
T PLN02414 802 EGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNGTCAH-------------EFIIDLRPFKNTAGIEPEDVAKRLMD-- 865 (993)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCeee-------------eEEEeccccccccCCCHHHHHHHHHH--
Confidence 44555556677889999999976 333433321000000 0122222 221 1224667777775
Q ss_pred ccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 374 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 374 ~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
+|+.+.... .| ..+.+||++. ..++++++|.|.+++..+..
T Consensus 866 -~Gihapt~~-------~p------------------v~~~lmiepT-E~~skeelDrf~~al~~i~~ 906 (993)
T PLN02414 866 -YGFHAPTMS-------WP------------------VPGTLMIEPT-ESESKAELDRFCDALISIRE 906 (993)
T ss_pred -cCcEEeeec-------cc------------------cCCEEEEEee-eeCCHHHHHHHHHHHHHHHH
Confidence 443221100 01 1478999999 88888999999998877653
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=173.27 Aligned_cols=284 Identities=13% Similarity=0.053 Sum_probs=186.5
Q ss_pred CCchHHHHHHHHHHHhCCC---eEEEeC-ChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCe-eEEEeC
Q 013210 97 FNPTVLNLSRQMAALEGTE---AAYCTA-SGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI-TTTFVD 171 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~---~~~~ts-ggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~-~~~~v~ 171 (447)
....+++.++.+++++|+. +++|++ |||+++++++.+++++++.+++...+|+..... ....+ .|+ +++.++
T Consensus 46 f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~~g~f~~~~~~--~~~~~-~g~~~v~~~~ 122 (378)
T PRK03080 46 VKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLAWESFGSKWAT--DVVKQ-LKLEDPRVLE 122 (378)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEEeCHHHHHHHH--HHHhh-cCCCCceEec
Confidence 3466789999999999962 488775 999999999999887534344445677664321 11123 577 777765
Q ss_pred CC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCC
Q 013210 172 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSI 244 (447)
Q Consensus 172 ~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~ 244 (447)
.+ |+++ + +. +++|.+.+..|.||.+.|+++|++ +++|+++++|.+| +..+++..+ +|+++.|.
T Consensus 123 ~~~g~~~d~~~----i-~~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~ 192 (378)
T PRK03080 123 ADYGSLPDLSA----V-DF-DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK--LDVYTFSW 192 (378)
T ss_pred cCCCCCCCHhh----c-CC-CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH--CcEEEEeh
Confidence 43 4443 4 22 667999999999999999999999 8899999999998 556666654 79999999
Q ss_pred CccccC-CCCeeEEEEEcChHHHHHHHHHhhhh-----------------hhhcC--CCccHHHH---HHHHccC--C-c
Q 013210 245 SKFISG-GADIIAGAVCGPANLVNSMMDLHQGA-----------------LMLLG--PTMNPKVA---FELSERI--P-H 298 (447)
Q Consensus 245 sK~~g~-~g~~igG~l~~~~~~~~~l~~~~~~~-----------------~~~~g--~~~~~~~a---~~~~~~~--~-~ 298 (447)
||++++ +| + |+++.+++.++++.....+. ....+ ++++.... ..++..+ . .
T Consensus 193 ~K~l~~P~G--~-g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG 269 (378)
T PRK03080 193 QKVLGGEGG--H-GMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGG 269 (378)
T ss_pred hhhCCCCCc--e-EEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCC
Confidence 999976 56 4 99999988887765321000 00011 12222111 1122211 1 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC---HHHHHHHHHHhhcccc
Q 013210 299 LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQ 374 (447)
Q Consensus 299 l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~---~~~~~~l~~~l~~~~~ 374 (447)
+..+.++.+++.+++.+.|++.+. .+..+. +.. ..+.+++|.+++ ... ..+...+...
T Consensus 270 ~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~-~~~--------------~s~~i~~~~~~~~~~~~~-~~~~~~l~~~-- 331 (378)
T PRK03080 270 LDALIARTAANASVLYDWAEKTPWATPLVAD-PAT--------------RSNTSVTLDFVDAQAAVD-AAAVAKLLRE-- 331 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCC-ccc--------------cCccEEEEEcCCchHHHH-HHHHHHHHHc--
Confidence 555667788888999999988874 443221 110 123589998876 222 2355555432
Q ss_pred cccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 375 FGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 375 ~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
| +.+..|+.+ ...+.+|+|++ ..+++++|+.|.++|+++.
T Consensus 332 -~-i~v~~g~~~-----------------------~~~~~vRis~~-~~~t~~di~~l~~al~~~~ 371 (378)
T PRK03080 332 -N-GAVDIEPYR-----------------------DAPNGLRIWCG-PTVEPADVEALTPWLDWAF 371 (378)
T ss_pred -C-Ceecccccc-----------------------CCCCcEEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 2 344544221 01367999999 9999999999998888754
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=176.82 Aligned_cols=253 Identities=15% Similarity=0.194 Sum_probs=160.2
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC---C------------CCeEEEeCCCchhHHHHHHhhcC--
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS---S------------GGHVVAARTLYGGTHALLTHFFP-- 160 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~---~------------gd~Vi~~~~~y~~~~~~~~~~~~-- 160 (447)
++...++.++|+++.+.+.++|++||+||+..|++.... . ..+|+.....||+..........
T Consensus 56 ~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~ 135 (382)
T PLN00144 56 TIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKE 135 (382)
T ss_pred CHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCc
Confidence 555678888888887778899999999999999985421 0 24799999999887543321100
Q ss_pred --c-cc---CeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc--C--HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013210 161 --R-AC---NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA--N--IPELSRLAHDKGVTVVVDNTFSPLVL 230 (447)
Q Consensus 161 --~-~~---g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~--~--l~~I~~la~~~gi~livD~~~~~~~~ 230 (447)
+ .. -..+.+++..|++++++.++..++++|++|..+||.|... + +++|.++|++||+++|+||+|+++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr 215 (382)
T PLN00144 136 QYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGR 215 (382)
T ss_pred cccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 0 00 0124566777999999988556789999999999965554 2 88999999999999999999966632
Q ss_pred Cc--c---CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHH
Q 013210 231 SP--A---RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 231 ~~--~---~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
.. . ..+.+.-+.|++|.++ +|.++ |++++++++++.+..... ..+..++++.+.++.+.+..++. ....++
T Consensus 216 ~g~~~~~~~~~~~PDi~t~sK~l~-~G~pi-g~v~~~~~~~~~~~~~~~-~~T~~~~pl~~aaa~a~l~~i~~-~~~~~~ 291 (382)
T PLN00144 216 TGYLWAHEAYGVEPDIMTLAKPLA-GGLPI-GAVLVTEKVASAINPGDH-GSTFAGGPLVCNAALAVLDKISK-PGFLAS 291 (382)
T ss_pred cchHhhhhhcCCCCCEEEeccccc-CCcce-EEEEEcHHHHhccCCCCC-CCCCCCCHHHHHHHHHHHHHHhh-chHHHH
Confidence 21 0 1233333666999998 57888 999999998887753322 22234444444444433333321 122334
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
..+..+++.+.|++.-.+ +|... ...|.|.+++++|.. ....+...+..
T Consensus 292 ~~~~g~~l~~~l~~~~~~--~~~~~-------------~vrg~G~~~~l~l~~--~~~~~~~~~~~ 340 (382)
T PLN00144 292 VAKKGEYLRELLRRKLGG--NPHVK-------------EVRGVGLLVGIQLDV--PAGPLVDACRD 340 (382)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCce-------------eeecCceEEEEEecC--ccHHHHHHHHH
Confidence 444444454544432000 11100 112578899999942 23556666664
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=162.72 Aligned_cols=325 Identities=15% Similarity=0.171 Sum_probs=217.1
Q ss_pred ccccccccc----CCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC
Q 013210 62 IEASATFTV----MEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS 136 (447)
Q Consensus 62 i~~att~~~----~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~ 136 (447)
++.|.-|.- |.+ ++|.+.++.. |...++..-=...+....+||+.+|++.+.+.+++++|+.-||...|..|.+
T Consensus 175 VWCSNDYLgms~Hp~V~~A~~~tl~~h-G~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak 253 (570)
T KOG1360|consen 175 VWCSNDYLGMSRHPEVLDAMHDTLDRH-GAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAK 253 (570)
T ss_pred EEecCccccccCChHHHHHHHHHHHHc-CCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHH
Confidence 455555543 334 6666666543 2212221111122344578999999999999999999999999999887743
Q ss_pred --CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhcc---CCceEEEEEcCCCCCccccCHHHHHHH
Q 013210 137 --SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRL 211 (447)
Q Consensus 137 --~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~l~~I~~l 211 (447)
||..|...+..|.+...-+ +..+++-..+..+|++.|++.+++ ..+++|.+|++++++|.+.||++|+++
T Consensus 254 ~lpgcei~SD~gNHASMI~GI-----rns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDv 328 (570)
T KOG1360|consen 254 KLPGCEIFSDEGNHASMIQGI-----RNSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDV 328 (570)
T ss_pred HCCCcEEeccccchHHHHHHh-----hhcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHH
Confidence 5766666666666555444 224555555567899999988853 347899999999999999999999999
Q ss_pred HHhcCCEEEEeCCC-CCCCCC---------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcC
Q 013210 212 AHDKGVTVVVDNTF-SPLVLS---------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG 281 (447)
Q Consensus 212 a~~~gi~livD~~~-~~~~~~---------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g 281 (447)
+++||++..+||++ -++... ..-..+|++++++.|.||. +|||+.....+++.++.+..++.+.+.
T Consensus 329 ah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc----VGGYIAat~~LvDmiRSyAaGFIFTTS 404 (570)
T KOG1360|consen 329 AHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC----VGGYIAATRKLVDMIRSYAAGFIFTTS 404 (570)
T ss_pred HHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc----ccceehhhhhHHHHHHHhcCceEEecC
Confidence 99999999999998 333211 1111479999999999995 579999999999999998876643333
Q ss_pred CCccHHH-HHHHHccCCcH--HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 282 PTMNPKV-AFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 282 ~~~~~~~-a~~~~~~~~~l--~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
.++...+ |..+.+.++.- ....++++++..++.+.|.+.|+.|.. +|. .++.+.+.+
T Consensus 405 LPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~-----~pS---------------HIiPv~vgd 464 (570)
T KOG1360|consen 405 LPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIP-----NPS---------------HIIPVRVGD 464 (570)
T ss_pred CChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccC-----CCc---------------ceeeeeccC
Confidence 3322222 22233333222 223345678888999999998875542 122 288899887
Q ss_pred HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 359 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 359 ~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
...+....+.|-. .+++ .|- .+..|... .....+||... ..++.+..+.|.++|..
T Consensus 465 a~l~~~~sd~Li~--~h~i-YvQ------aINyPTV~--------------rG~E~LRiaPT-P~HT~~mm~~lv~~l~~ 520 (570)
T KOG1360|consen 465 AALAKQASDILIS--KHNI-YVQ------AINYPTVA--------------RGTERLRIAPT-PHHTPQMMNILVNALLD 520 (570)
T ss_pred HHHHHHHHHHHHH--hcCe-EEE------eccCCccc--------------ccceeeecCCC-CCCCHHHHHHHHHHHHH
Confidence 6555555555543 1232 211 11223322 23467999999 98899988888888765
Q ss_pred hh
Q 013210 439 MQ 440 (447)
Q Consensus 439 ~~ 440 (447)
.=
T Consensus 521 vw 522 (570)
T KOG1360|consen 521 VW 522 (570)
T ss_pred HH
Confidence 53
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-18 Score=164.09 Aligned_cols=225 Identities=18% Similarity=0.221 Sum_probs=169.2
Q ss_pred CCchHHHHHHHHHHHhCCC--e-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 97 FNPTVLNLSRQMAALEGTE--A-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~--~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
......++.+.+..+++.+ . .++++|||.|+.+++.+++++||+|++......+.. +.++..+ +|.++..++..
T Consensus 36 F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R--~~~ia~~-~g~~v~~~~~~ 112 (383)
T COG0075 36 FVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGER--FAEIAER-YGAEVVVLEVE 112 (383)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHH--HHHHHHH-hCCceEEEeCC
Confidence 3455678888888888876 3 678899999999999999999999998877654443 3344445 78888777654
Q ss_pred -----CHHHHHHhhc-cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCC
Q 013210 174 -----DHEMVNSAIV-QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSIS 245 (447)
Q Consensus 174 -----d~~~l~~~i~-~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~s 245 (447)
|+++++++++ .++.++|.+.+.-.+||...|+++|+++|++||+++|+|.+- +...+++.++|+|+++.+..
T Consensus 113 wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQ 192 (383)
T COG0075 113 WGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQ 192 (383)
T ss_pred CCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCc
Confidence 9999999994 356889999999899999999999999999999999999986 67778889999999999999
Q ss_pred ccccCCCCeeEEEEEcChHHHHHHHHH------------hhh----hhhhcCCCccHHHH-HHHHccC--CcHHHHHHHH
Q 013210 246 KFISGGADIIAGAVCGPANLVNSMMDL------------HQG----ALMLLGPTMNPKVA-FELSERI--PHLGLRMKEH 306 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~~~~~~l~~~------------~~~----~~~~~g~~~~~~~a-~~~~~~~--~~l~~~~~~~ 306 (447)
|.++.|.. + |++..+++.++.+... ... ..+...++.+...+ ..+++.+ +-++.+.+++
T Consensus 193 K~l~~PPG-l-a~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH 270 (383)
T COG0075 193 KALGAPPG-L-AFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARH 270 (383)
T ss_pred hhccCCCc-c-ceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99996644 3 8888887766655321 110 01111122222222 1222222 3367899999
Q ss_pred HHHHHHHHHHHHhCCCeeeC
Q 013210 307 CHRALIFARRMKKLGLKVLY 326 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~ 326 (447)
+++++.+++.++++|+++..
T Consensus 271 ~~~~~a~r~~~~alGl~~~~ 290 (383)
T COG0075 271 RRLAEALRAGLEALGLELFA 290 (383)
T ss_pred HHHHHHHHHHHHHcCCcccc
Confidence 99999999999999986554
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=160.89 Aligned_cols=310 Identities=15% Similarity=0.167 Sum_probs=213.1
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHH
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHA 153 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~ 153 (447)
++-.+.+++.=..+++ -.+=.........||.+||++.+.|+.++.+++..||..++.+++.+.|-|...+..|.+..+
T Consensus 88 ~a~~~aleeyGaGlss-vrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfdANag~feail~pedAvfSDeLNhASIId 166 (417)
T KOG1359|consen 88 NAGQKALEEYGAGLSS-VRFICGTQDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIID 166 (417)
T ss_pred HHHHHHHHHhCCCccc-eeEEecchHHHHHHHHHHHHHhCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhh
Confidence 4444555443222332 223233455668999999999999999999999999999999999999999999888888777
Q ss_pred HHHhhcCcccCeeEEEeCCCCHHH-HHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCC
Q 013210 154 LLTHFFPRACNITTTFVDISDHEM-VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 231 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~d~~~-l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~ 231 (447)
-+ .+..+ ...+++-|++. +.++. +.+.++|......++.|.+.|+++|.+++++||+++++||+| +++...
T Consensus 167 Gi-rLckr-----y~h~dv~~l~~~l~~a~-k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~ 239 (417)
T KOG1359|consen 167 GI-RLCKR-----YRHVDVFDLEHCLISAC-KMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGE 239 (417)
T ss_pred hh-HHHhh-----hccchhHHHHHHHHHhh-hheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecC
Confidence 66 22222 23333334432 22334 557889999999999999999999999999999999999999 433211
Q ss_pred ----cc-C----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHH---HHccCCcH
Q 013210 232 ----PA-R----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE---LSERIPHL 299 (447)
Q Consensus 232 ----~~-~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~---~~~~~~~l 299 (447)
.. . -.+|+...+++|.+|+. .|||..+|+.+++.++.....+ .+.+++++..... +...+-.-
T Consensus 240 tGrGt~E~~~vm~~vdiinsTLgKAlGga---~GGyttgp~~li~llrqr~Rpy--lFSnslppavV~~a~ka~dllm~s 314 (417)
T KOG1359|consen 240 TGRGTAEEFGVMGDVDIINSTLGKALGGA---SGGYTTGPKPLISLLRQRSRPY--LFSNSLPPAVVGMAAKAYDLLMVS 314 (417)
T ss_pred CCCChHHHhCCCCcceehhhhhhhhhcCC---CCCCccCChhHHHHHHhcCCce--eecCCCChhhhhhhHHHHHHHHhh
Confidence 11 1 14899999999999965 3699999999999887654434 3344444322111 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013210 300 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA 379 (447)
Q Consensus 300 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~ 379 (447)
...+++.+.+.+++++.+...|+.+.. .+|| +..+.+.+.+.+.++.+.|...+ +-+|+
T Consensus 315 ~~~i~~~~a~~qrfr~~me~aGftIsg---~~hP-----------------I~pv~lGda~lA~~~ad~lLk~G-i~Vig 373 (417)
T KOG1359|consen 315 SKEIQSRQANTQRFREFMEAAGFTISG---ASHP-----------------ICPVMLGDARLASKMADELLKRG-IYVIG 373 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceecC---CCCC-----------------ccceecccHHHHHHHHHHHHhcC-ceEEe
Confidence 234566778888999998888876653 2345 78888888877888888887643 22233
Q ss_pred ccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 380 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 380 vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
+| +|.... ....||+.++ ..+++++|+.+.+|+.++-+
T Consensus 374 fs---------~PvVP~--------------gkariRVqiS-AaHt~edid~~i~Af~~vgr 411 (417)
T KOG1359|consen 374 FS---------YPVVPK--------------GKARIRVQIS-AAHTEEDIDRLIEAFSEVGR 411 (417)
T ss_pred ec---------CCcCCC--------------CceEEEEEEe-hhcCHHHHHHHHHHHHHHHH
Confidence 33 232221 1346899999 88899999999888877643
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-19 Score=172.12 Aligned_cols=281 Identities=10% Similarity=0.056 Sum_probs=185.7
Q ss_pred chHHHHHHHHHHHhCC-C--eE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 99 PTVLNLSRQMAALEGT-E--AA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~-~--~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
...+++++.++++++. + .+ ++++||+.|+.+++..++.+|+++++......+.+. .....+ .|.. ..+..+
T Consensus 48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~--~~~a~~-~g~~-~~~~~~~ 123 (360)
T PRK05355 48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKA--IKEAKK-YGEV-NVAASSE 123 (360)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHH--HHHHHH-hCCc-eEEeccc
Confidence 6778999999999996 3 24 555899999999999999999887766655443332 233333 5644 332211
Q ss_pred -----CHHHHHH-hhccCCceEEEEEcCCCCCcccc-CHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCC
Q 013210 174 -----DHEMVNS-AIVQGRTKVLYFESISNPTLAVA-NIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSI 244 (447)
Q Consensus 174 -----d~~~l~~-~i~~~~t~lV~i~~~~NptG~v~-~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~ 244 (447)
+..++++ .+ ++++++|++.+..+.||.+. |+++| +|+++++|.++ +..++++.++ |++++|.
T Consensus 124 ~~g~~~~~~~~~~~l-~~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~~--d~~~~ss 194 (360)
T PRK05355 124 DDGFTYIPPLDEWQL-SDDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSKF--GLIYAGA 194 (360)
T ss_pred ccCCCCCCChhhccC-CCCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHHHc--cEEEEec
Confidence 2334444 67 66899999999999999998 77776 89999999998 5566666655 5999999
Q ss_pred CccccCCCCeeEEEEEcChHHHHHHHHH-h--------hhhhhhcCCCccHHHHHH---HHccC--C-cHHHHHHHHHHH
Q 013210 245 SKFISGGADIIAGAVCGPANLVNSMMDL-H--------QGALMLLGPTMNPKVAFE---LSERI--P-HLGLRMKEHCHR 309 (447)
Q Consensus 245 sK~~g~~g~~igG~l~~~~~~~~~l~~~-~--------~~~~~~~g~~~~~~~a~~---~~~~~--~-~l~~~~~~~~~~ 309 (447)
+|++|++| + |+++.+++.++++... . .......+ +++....+. ++..+ . .+..+.++++++
T Consensus 195 qK~lgP~G--l-g~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~-Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l 270 (360)
T PRK05355 195 QKNIGPAG--L-TIVIVREDLLGRALPSIPSMLDYKTHADNDSMYN-TPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEK 270 (360)
T ss_pred cccccCCc--e-EEEEECHHHHhhcccCCChHHHHHHHHhcCCccC-CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999888 4 8899998887665431 1 00000112 222222111 22221 2 466777888999
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
++++.++|++.+....+.. +.. ..+.+++|.+++......++..+.. .|++ +..|.
T Consensus 271 ~~~l~~~l~~~~~~~~~~~----~~~-----------rs~~v~sf~~~~~~~~~~~~~~~~~---~Gi~-~~~~~----- 326 (360)
T PRK05355 271 AALLYDAIDSSDFYRNPVA----PED-----------RSRMNVPFTLADEELDKKFLAEAKA---AGLV-GLKGH----- 326 (360)
T ss_pred HHHHHHHHHhCCCcccCCC----hhh-----------cCCcEEEEEcCChHHHHHHHHHHHH---CCCc-ccCCC-----
Confidence 9999999999874111111 100 1234899999875333455555443 2322 12220
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
. ..+.+|+|++ ..++.++|+.|.++|+++..
T Consensus 327 -----~---------------~~g~vRiS~~-~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 327 -----R---------------SVGGMRASIY-NAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred -----C---------------ccCcEEEECC-CCCCHHHHHHHHHHHHHHHH
Confidence 0 1368999999 99999999999999998753
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-19 Score=174.83 Aligned_cols=256 Identities=14% Similarity=0.174 Sum_probs=164.3
Q ss_pred CCchHHHHHHHHHHHhC-CCeEEEeCChHHHHHHHHHHhcC----CC-----CeEEEeCCCchhHHHHHHhhc--Cc-cc
Q 013210 97 FNPTVLNLSRQMAALEG-TEAAYCTASGMSAISSVLMQLCS----SG-----GHVVAARTLYGGTHALLTHFF--PR-AC 163 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g-~~~~~~tsggt~A~~~al~~l~~----~g-----d~Vi~~~~~y~~~~~~~~~~~--~~-~~ 163 (447)
.++...++.++|+++.+ .+.++|++||+||+..|++.... .| ++|+.....||+......... +. ..
T Consensus 80 ~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~ 159 (408)
T PRK04612 80 YSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQE 159 (408)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCccccc
Confidence 34555678888887764 46799999999999999975431 12 368999998888653321110 00 00
Q ss_pred C-----eeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc--
Q 013210 164 N-----ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-- 232 (447)
Q Consensus 164 g-----~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-- 232 (447)
+ ..+.+++..|++.++++++.+++.+|+++..+...|.+.+ +++|.++|++||+++|+||+|+++....
T Consensus 160 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~ 239 (408)
T PRK04612 160 GYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTL 239 (408)
T ss_pred CCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCch
Confidence 1 1245567779999999884456777777776655555442 8899999999999999999996653322
Q ss_pred ---cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHH
Q 013210 233 ---ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 309 (447)
Q Consensus 233 ---~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~ 309 (447)
...+++..+.|++|.++ +|.++ |+++.++++.+.+..... ..+..++.+...++...+..++. ....++..++
T Consensus 240 ~a~~~~~~~pdi~t~~K~l~-~G~pi-ga~~~~~~~~~~~~~~~~-~~t~~~~p~~~aaa~a~L~~~~~-~~l~~~~~~~ 315 (408)
T PRK04612 240 FAHWQEQVTPDIVTLAKALG-GGFPI-GAMLAGPKVAETMQFGAH-GTTFGGNPLAAAVARVALRKLAS-PQIAANVARQ 315 (408)
T ss_pred hhhhhcCCCCCEEEEcchhc-CCCce-EEEEECHHHHhhhcCCCc-CCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 12355666777999999 57898 777778888776654322 22233444444444444433322 2345666777
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQN 371 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~ 371 (447)
.+++.+.|++...+....+ +..|.|.++.+++.. ...+..+.+.+..
T Consensus 316 g~~l~~~l~~l~~~~~~i~---------------~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~ 364 (408)
T PRK04612 316 SAALRAGLEALNAEFGVFA---------------QVRGRGLMLGAVLAPAHAGQAGAILDLAAE 364 (408)
T ss_pred HHHHHHHHHHHHhhCCCee---------------eeeccceEEEEEecCchhhHHHHHHHHHHH
Confidence 7788887776422111101 122688899999862 2345667777765
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=173.66 Aligned_cols=277 Identities=12% Similarity=0.170 Sum_probs=171.9
Q ss_pred HHHHHHHHHHh-CC-C-eEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHH-HHHHhh----cCcccCe---eEE
Q 013210 102 LNLSRQMAALE-GT-E-AAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTH-ALLTHF----FPRACNI---TTT 168 (447)
Q Consensus 102 ~~l~~~ia~l~-g~-~-~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~-~~~~~~----~~~~~g~---~~~ 168 (447)
..+++++|+.+ +. + .++|++||++|+..+++... ..+++|++....||+.. ..+... .....+. .+.
T Consensus 69 ~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (375)
T PRK04260 69 NSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFS 148 (375)
T ss_pred CHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeE
Confidence 45666777654 32 2 36899999999999998653 34578999988888643 222110 0000111 123
Q ss_pred EeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC--cc---C--CCC
Q 013210 169 FVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS--PA---R--LGA 237 (447)
Q Consensus 169 ~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~--~~---~--~g~ 237 (447)
+.+.+|++++++.+ ++++++|++|+++|++|.+.+ +++|.++|+++|+++|+||+|+++... +. . ...
T Consensus 149 ~~~~~dl~~l~~~l-~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~p 227 (375)
T PRK04260 149 YAIFNDLNSVKALV-NKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEP 227 (375)
T ss_pred EeCCCCHHHHHHhc-CCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCC
Confidence 33456899999988 678899999999999999875 899999999999999999999555321 11 1 234
Q ss_pred eEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L 317 (447)
|+ .|+||.++ +|.++ |++++++++.+.+..... ..+..++.+.+.++...+..++. ....++..+..+++++.|
T Consensus 228 di--~t~sK~l~-~G~~i-g~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l 301 (375)
T PRK04260 228 DI--FTLAKGLA-NGVPV-GAMLAKSSLGGAFGYGSH-GSTFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQEQL 301 (375)
T ss_pred CE--EEeccccc-CCcce-EEEEEcHHHHhhcCCCCC-CCCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Confidence 54 47999998 57888 999999888777653222 22233344444444444433221 122333334444444444
Q ss_pred ----HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccc
Q 013210 318 ----KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 393 (447)
Q Consensus 318 ----~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a 393 (447)
.+++..... .+.|.++++++.. ....+.+.+... |+ .+. |.
T Consensus 302 ~~~~~~~~~~~~~-------------------~~~g~~~~~~~~~--~~~~~~~~l~~~---Gi-~v~----------~~ 346 (375)
T PRK04260 302 QKALQDKETVTTV-------------------RGLGYMIGIETTA--DLSQLVEAARDK---GL-IVL----------TA 346 (375)
T ss_pred HHHHhhCCCeeEE-------------------eccceEEEEEecC--cHHHHHHHHHhC---CC-EEe----------cC
Confidence 333211111 1357799999853 245677777652 32 211 10
Q ss_pred cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 394 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 394 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
..+.|||++. ...++++++.+.+.|++
T Consensus 347 -----------------~~~~lR~~~~-~~~t~~~i~~~l~~l~~ 373 (375)
T PRK04260 347 -----------------GTNVIRLLPP-LTLTKEEIEQGIAILSE 373 (375)
T ss_pred -----------------CCCEEEEcCC-CccCHHHHHHHHHHHHH
Confidence 1367999997 66667777777766654
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-18 Score=167.60 Aligned_cols=306 Identities=11% Similarity=0.071 Sum_probs=198.6
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCC---chHHHHHHHHHHHhCC-C--eEEEeC-ChHHHHHHHHHHhcCCCCeEEEeCC
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFN---PTVLNLSRQMAALEGT-E--AAYCTA-SGMSAISSVLMQLCSSGGHVVAART 146 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~l~~~ia~l~g~-~--~~~~ts-ggt~A~~~al~~l~~~gd~Vi~~~~ 146 (447)
+.+.+++...-..-.+.+..+.... ...+++++.++++++. + .++|++ |||+|+++++..++.+|+++++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~ 88 (349)
T TIGR01364 9 EQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVT 88 (349)
T ss_pred HHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC
Confidence 5666666542211234565665555 6788999999999995 2 377775 4999999999999988998877766
Q ss_pred CchhHHHHHHhhcCcccCeeEEEeC---------CCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCC
Q 013210 147 LYGGTHALLTHFFPRACNITTTFVD---------ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV 217 (447)
Q Consensus 147 ~y~~~~~~~~~~~~~~~g~~~~~v~---------~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi 217 (447)
...+.+. .....+ .|. +..+. ..++++++ + ++++++|.+.+..+.||...+ ++++.+++
T Consensus 89 G~fg~r~--~~~a~~-~g~-~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~th~ETstGv~~~-----~l~~~~~~ 156 (349)
T TIGR01364 89 GAWSKKA--AKEAKK-YGV-VNVVASGKEGNYTKIPDPSTWE--I-SEDAAYVHYCANETIHGVEFR-----ELPDVKNA 156 (349)
T ss_pred CHHHHHH--HHHHHH-hCC-cEEEeccccCCCCCCCCHHhcC--C-CCCCCEEEEcCCCCcccEecc-----eecccCCC
Confidence 5544433 233334 566 44433 12455444 3 568999999999999999877 66777899
Q ss_pred EEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHH-------hh--hhhhhcCCCccH
Q 013210 218 TVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL-------HQ--GALMLLGPTMNP 286 (447)
Q Consensus 218 ~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~-------~~--~~~~~~g~~~~~ 286 (447)
++++|.++ +..+++..++ |++++|.+|++|++| + |+++.+++.++++... .. ......+ +++.
T Consensus 157 l~iVDavss~g~~~id~~~~--d~~~~ssqK~lgP~G--l-g~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Tp~~ 230 (349)
T TIGR01364 157 PLVADMSSNILSRPIDVSKF--GLIYAGAQKNIGPAG--L-TVVIVRKDLLGRASRITPSMLNYKIHAENDSMYN-TPPT 230 (349)
T ss_pred eEEEEccccccCccCCHHHc--cEEEEecccccCCCc--e-EEEEECHHHHhhcccCCCCcchHHHHHhcCCCCC-CCcH
Confidence 99999998 5566666654 599999999999888 4 8899998887765321 10 0001122 2222
Q ss_pred HHHHH---HHccC--C-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH
Q 013210 287 KVAFE---LSERI--P-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 360 (447)
Q Consensus 287 ~~a~~---~~~~~--~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~ 360 (447)
...+. ++..+ . .+..+.+++.++++++.+.|++++. +..+... |.. ....+++|.+++..
T Consensus 231 ~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~g-l~~~~~~--~~~-----------rs~~v~sf~~~~~~ 296 (349)
T TIGR01364 231 FAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNG-FYRNPVD--PRN-----------RSRMNVVFTLGNEE 296 (349)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCC-eeccCCC--HHH-----------cCCeEEEEecCChh
Confidence 22111 22211 2 3667778889999999999999853 2111110 110 12347999988542
Q ss_pred HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 361 ~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
....++..+.. .|+ ++..|.. ..+.+|+|++ ..++.++|+.|.++|+++.
T Consensus 297 ~~~~~~~~~~~---~Gi-~~~~~~~-------------------------~~g~vRvS~~-~~nt~edid~l~~al~~~~ 346 (349)
T TIGR01364 297 LEKRFLKEAEE---RGL-VSLKGHR-------------------------SVGGMRASIY-NAMPLEGVQALVDFMKEFQ 346 (349)
T ss_pred HhHHHHHHHHH---CCC-cccCCcc-------------------------ccCeeEEECc-CCCCHHHHHHHHHHHHHHH
Confidence 22445444443 232 3332210 1367999999 9999999999999999875
Q ss_pred h
Q 013210 441 D 441 (447)
Q Consensus 441 ~ 441 (447)
+
T Consensus 347 ~ 347 (349)
T TIGR01364 347 K 347 (349)
T ss_pred H
Confidence 4
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=175.54 Aligned_cols=222 Identities=14% Similarity=0.157 Sum_probs=146.3
Q ss_pred CCchHHHHHHHHHHHhC-CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhh------------cC-
Q 013210 97 FNPTVLNLSRQMAALEG-TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF------------FP- 160 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g-~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~------------~~- 160 (447)
.++...+++++|+++.. .+.++|++||++|+..+++... ...++||+..+.|++....+... .+
T Consensus 86 ~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~ 165 (423)
T TIGR00713 86 PTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPG 165 (423)
T ss_pred CCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCC
Confidence 44556789999999875 3679999999999999998542 24579999999999975433110 00
Q ss_pred --cccCeeEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013210 161 --RACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 161 --~~~g~~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~ 232 (447)
...+..+..++..|++++++++.+ +++++|+++...+.+|.+.+ +++|.++|++||+++|+||+|+++....
T Consensus 166 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~ 245 (423)
T TIGR00713 166 VPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVAL 245 (423)
T ss_pred CCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCc
Confidence 001112344556689999998832 57899999865555898876 7899999999999999999996663211
Q ss_pred ------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh--hhhhhhcCCCccHHHHHHHHccCCc--HHHH
Q 013210 233 ------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH--QGALMLLGPTMNPKVAFELSERIPH--LGLR 302 (447)
Q Consensus 233 ------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~--~~~~~~~g~~~~~~~a~~~~~~~~~--l~~~ 302 (447)
.....|+ .+++|.++ .|.++ |++++++++++.+.... ....+..++.+.+.++.+.+..++. +.+.
T Consensus 246 ~~~~~~~~~~pDi--~t~sK~l~-~G~pi-g~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~ 321 (423)
T TIGR00713 246 GGAQEYFGVEPDL--TTLGKIIG-GGLPV-GAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTE 321 (423)
T ss_pred chhHHHhCCCcch--hhhhhhhc-CCCce-eeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHH
Confidence 1123454 47999999 78888 99999999988875321 1112234444444444444443322 2222
Q ss_pred -HHHHHHHHHHHHHHHHhCCC
Q 013210 303 -MKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 303 -~~~~~~~~~~l~~~L~~~~~ 322 (447)
.+.....++.|.+.+++++.
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~~ 342 (423)
T TIGR00713 322 LDELAKRLAEGLSEVLEDTGI 342 (423)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 23334455556655666554
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-18 Score=172.40 Aligned_cols=257 Identities=12% Similarity=0.147 Sum_probs=160.8
Q ss_pred CCCchHHHHHHHHHHHh-C-CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhc---C---cccC-
Q 013210 96 HFNPTVLNLSRQMAALE-G-TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF---P---RACN- 164 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~-g-~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~---~---~~~g- 164 (447)
..++...++.++|+++. + .+.++|++||++|+..|++... ....+|+.....||+......... . +..+
T Consensus 83 ~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~ 162 (433)
T PRK08117 83 IYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQP 162 (433)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCC
Confidence 34567788999999997 2 4679999999999999998532 223578888888888543321100 0 0000
Q ss_pred --eeEEEeCCC-----------------CHHHHHHhhc----cCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCC
Q 013210 165 --ITTTFVDIS-----------------DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV 217 (447)
Q Consensus 165 --~~~~~v~~~-----------------d~~~l~~~i~----~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi 217 (447)
..+.+++.. +++++++.++ .+++.+|++|.+....|.+.| +++|.++|++||+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~ 242 (433)
T PRK08117 163 LLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGI 242 (433)
T ss_pred CCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 012222221 4556666653 246889999999999999988 9999999999999
Q ss_pred EEEEeCCCCCCCCC-----ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHH
Q 013210 218 TVVVDNTFSPLVLS-----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292 (447)
Q Consensus 218 ~livD~~~~~~~~~-----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~ 292 (447)
++|+||+|+++... ...++++..+.|++|.+| .|.++ |++++++++++.+..... ..+..+++++..++.+.
T Consensus 243 llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~np~~~aaa~a~ 319 (433)
T PRK08117 243 LLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIA-SGLPL-SAVVASKELMEQWPLGSH-GTTFGGNPVACAAALAT 319 (433)
T ss_pred EEEEecchhccCccccchhHhhcCCCCCEeehhhhcc-CCCcc-eeEEEcHHHHhhccCCCC-CCCCCcCHHHHHHHHHH
Confidence 99999999665321 122344444567999999 67888 788888888877643222 22233444444444444
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC------HHHHHHHH
Q 013210 293 SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET------EEKANRLM 366 (447)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~------~~~~~~l~ 366 (447)
+..++. ....++..++.+++.+.|++...+ +|... +..|.|.++.+++.. ......+.
T Consensus 320 L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~~~-------------~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~ 383 (433)
T PRK08117 320 LEVIKE-EKLLDNANEMGAYALERLEVLKEK--HPVIG-------------DVRGIGLMIGIEIVDPDGEPDGDAVEKIL 383 (433)
T ss_pred HHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc--CCcee-------------eeecCCcEEEEEEecCCCCcchHHHHHHH
Confidence 433321 124455666667777777654211 11101 112678899999842 23345566
Q ss_pred HHhhc
Q 013210 367 NYLQN 371 (447)
Q Consensus 367 ~~l~~ 371 (447)
..+..
T Consensus 384 ~~l~~ 388 (433)
T PRK08117 384 DKCLE 388 (433)
T ss_pred HHHHH
Confidence 66654
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-18 Score=170.83 Aligned_cols=292 Identities=15% Similarity=0.173 Sum_probs=187.6
Q ss_pred CCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcC----CC-CeEEEeCCCchhHHHHHHhhcC-----cc--
Q 013210 97 FNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCS----SG-GHVVAARTLYGGTHALLTHFFP-----RA-- 162 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~----~g-d~Vi~~~~~y~~~~~~~~~~~~-----~~-- 162 (447)
.++...++.++|+++... +.++|++||+||+..|++.... .| .+||+....||+........-. ..
T Consensus 115 ~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~ 194 (442)
T TIGR03372 115 LDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFM 194 (442)
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCC
Confidence 466677888888888643 5699999999999999985421 23 5799999988887543311100 00
Q ss_pred -cCeeEEEeCCCCHHHHHHhhc-----cCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC--
Q 013210 163 -CNITTTFVDISDHEMVNSAIV-----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-- 230 (447)
Q Consensus 163 -~g~~~~~v~~~d~~~l~~~i~-----~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~-- 230 (447)
....+..++.+|.+++++.++ ..++.+|++|++....|.+.| +++|.++|++||+++|+||+|+++..
T Consensus 195 p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG 274 (442)
T TIGR03372 195 PLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTG 274 (442)
T ss_pred CCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccc
Confidence 112345667778888877773 146889999999999999887 99999999999999999999965531
Q ss_pred ---Cc--cCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHh-hhhhhhcCCCccHHHHHHHHccCCcHHHHH
Q 013210 231 ---SP--ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH-QGALMLLGPTMNPKVAFELSERIPHLGLRM 303 (447)
Q Consensus 231 ---~~--~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~-~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 303 (447)
.. .....|+++ ++|.+|+ | .++ |+++.++++.+.+.... ....+..|++.+..++.+.+..++. ....
T Consensus 275 ~~~a~e~~gv~PDivt--~gK~lg~-G~~Pi-gavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~-~~l~ 349 (442)
T TIGR03372 275 KMFACEHEGVQPDILC--LAKALGG-GVMPI-GATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLE-KNLP 349 (442)
T ss_pred cchhhhhcCCCCCeee--ehhhhcC-Ccccc-eEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHh-ccHH
Confidence 11 122357665 8999984 5 467 66777888887763211 1122233444444444444433321 1123
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCC-CCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc
Q 013210 304 KEHCHRALIFARRMKKLGLKVLYP-GLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL 382 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~~~~v~~p-~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~ 382 (447)
++..+..++|.+.|++...+ +| .+. +..|.|.++.+++...+....+.+.+.. .|++ ++.
T Consensus 350 ~~~~~~G~~l~~~L~~l~~~--~~~~i~-------------~vRG~Gl~~giel~~~~~~~~i~~~l~~---~Gvl-~~~ 410 (442)
T TIGR03372 350 AQAAIKGDFLLDGFQQLAAE--YPDLII-------------EARGKGLLMAIEFRDNEIGYAFAKELFQ---QNIL-VAG 410 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCCceE-------------EEecceEEEEEEeCChHHHHHHHHHHHH---CCcE-Eee
Confidence 44555666666666553211 11 000 1226788999999865556677777775 2332 211
Q ss_pred cCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 383 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 383 G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
. +...+.+||++. ...+++.++.+.++|++
T Consensus 411 ~-------------------------~~~~~~lr~~Pp-l~~t~~~id~~~~~l~~ 440 (442)
T TIGR03372 411 T-------------------------LNNAKSIRIEPP-LTITIEQCALVIKAAKD 440 (442)
T ss_pred c-------------------------CCCCCEEEEECC-cccCHHHHHHHHHHHHH
Confidence 0 111367999999 88888888888887765
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=152.46 Aligned_cols=271 Identities=13% Similarity=0.144 Sum_probs=185.7
Q ss_pred CCCeEEEeCChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhcc-C
Q 013210 113 GTEAAYCTASGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ-G 185 (447)
Q Consensus 113 g~~~~~~tsggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~-~ 185 (447)
-.+.+.+.-|+.|.+.++++..+.|| ++|+...|+|.-+.-.. ...+++++.++.+ +.+++.+.++. .
T Consensus 85 t~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A-----~iNd~eVvkvpl~pdF~lnvdai~evl~~ds 159 (375)
T KOG0633|consen 85 TSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDA-----AINDAEVVKVPLNPDFSLNVDAIAEVLELDS 159 (375)
T ss_pred CccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEe-----ecCCceEEEecCCCCccccHHHHHHHHhccc
Confidence 35678888999999999999999999 78999999998764332 2357888887754 78888887743 3
Q ss_pred CceEEEEEcCCCCCccccCHHHHHHHHHhc-CCEEEEeCCCCCCCC--C----ccCCCCeEEEeCCCccccCCCCeeEEE
Q 013210 186 RTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTFSPLVL--S----PARLGADVVVHSISKFISGGADIIAGA 258 (447)
Q Consensus 186 ~t~lV~i~~~~NptG~v~~l~~I~~la~~~-gi~livD~~~~~~~~--~----~~~~g~di~~~S~sK~~g~~g~~igG~ 258 (447)
.++++++++|+||||.+...+.|.++.+-. |.++++||+|-.|.. + ..++..-+++.++||.+|..|.|+ |+
T Consensus 160 ~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsfGLAGiRv-G~ 238 (375)
T KOG0633|consen 160 KIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSFGLAGIRV-GY 238 (375)
T ss_pred cceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhcCcceeEe-ec
Confidence 789999999999999999888888887654 799999999944432 2 123467899999999999999999 99
Q ss_pred EEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhH
Q 013210 259 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 336 (447)
Q Consensus 259 l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~ 336 (447)
-+.+..+++-+......+ .-+......|..++. ..+.+......+.+.+.+|...|.+.++--.+|+-
T Consensus 239 ~~~~~~ia~iln~~KaPY---NiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg------- 308 (375)
T KOG0633|consen 239 GAFPLSIAEILNRAKAPY---NISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGG------- 308 (375)
T ss_pred ccccHHHHHHHHhccCCc---cccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCc-------
Confidence 999999888887766532 222233334444444 34556666667788888898899887662223431
Q ss_pred HHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCe
Q 013210 337 LLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 414 (447)
Q Consensus 337 l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~ 414 (447)
....++-+++.+. ..+..+..++.. ..|+ .|.+-+.+ +.| .|.
T Consensus 309 ----------~daNFiLi~v~~~~n~~akkly~q~at--~~gV-vVRfrgse-----~~c-----------------~G~ 353 (375)
T KOG0633|consen 309 ----------SDANFILIEVTGGDNGMAKKLYKQDAT--KMGV-VVRFRGSE-----EGC-----------------KGY 353 (375)
T ss_pred ----------ccccEEEEEEcCCCcHHHHHHHHHHHH--hcce-EEEEcCCc-----ccc-----------------cee
Confidence 1233777777622 223344433322 1332 33333221 222 388
Q ss_pred EEEEeCCCCCHHHHHHHHHH
Q 013210 415 VRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 415 iRiS~g~~~~~~~~i~~l~~ 434 (447)
+||++|..|+..-+++-|.+
T Consensus 354 lRitvGt~EentvL~k~~K~ 373 (375)
T KOG0633|consen 354 LRITVGTPEENTVLMKCLKQ 373 (375)
T ss_pred EEEEcCCcccchHHHHHHHh
Confidence 99999954666655555544
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=170.69 Aligned_cols=289 Identities=14% Similarity=0.155 Sum_probs=177.5
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC------CC-CeEEEeCCCchhHHHHHHhhcCcc-----c--
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS------SG-GHVVAARTLYGGTHALLTHFFPRA-----C-- 163 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~------~g-d~Vi~~~~~y~~~~~~~~~~~~~~-----~-- 163 (447)
++...++.+.+++..+.+.++|++||++|+..+++.+.. +| ++||+.+..||+............ .
T Consensus 77 ~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~ 156 (395)
T PRK03715 77 NEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAP 156 (395)
T ss_pred CHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCC
Confidence 444456666666665567899999999999999987641 23 578888888877543221111100 0
Q ss_pred -CeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC-------C
Q 013210 164 -NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------S 231 (447)
Q Consensus 164 -g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~-------~ 231 (447)
-..+..++..|++++++.+ .+++++|++|+++++.|.+.| +++|.++|++||+++|+||+|+++.. .
T Consensus 157 ~~~~~~~~~~~d~~~l~~~l-~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~ 235 (395)
T PRK03715 157 QVPGFPKAELNDIASVEKLI-TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYE 235 (395)
T ss_pred CCCCceeeCCchHHHHHHHc-CCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHh
Confidence 0012333456899999998 678999999999999999887 99999999999999999999965521 1
Q ss_pred ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 232 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 232 ~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
-.....|++ +++|.+|+ |.++ |++++++++.. +..... ..+..|++....++.+.+..++. ....++.+++.+
T Consensus 236 ~~gv~PDi~--t~gK~lg~-G~p~-~av~~~~~i~~-~~~~~~-~~T~~g~pl~~aaala~L~~l~~-~~l~~~~~~~g~ 308 (395)
T PRK03715 236 LSGIEPDIM--TLGKGIGG-GVPL-AALLAKAEVAV-FEAGDQ-GGTYNGNPLMTAVGVAVISQLLA-PGFLEGVRARGE 308 (395)
T ss_pred hcCCCCcee--eehhhhhC-Ccce-EEEEEcccccc-ccCCCc-CCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 112245664 57899996 5677 66677777742 211111 11233333333333333333321 235566777778
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~ 391 (447)
+|.+.|++...+.. +. +..|.|.++.+++.+.. ...+.+.+......|++. .
T Consensus 309 ~l~~~L~~l~~~~~---i~-------------~vrG~Glm~~i~l~~~~-~~~~~~~~~~~~~~Gi~~---~-------- 360 (395)
T PRK03715 309 YLKEKLLELSEERG---LE-------------GERGEGLLRALLLGKDI-GPQIVEKARDMQPDGLLL---N-------- 360 (395)
T ss_pred HHHHHHHHHhhcCC---cC-------------eEEcceeEEEEEecCch-HHHHHHHHHhccCCCEEE---e--------
Confidence 88888876422111 11 11267889999997531 233333333210113211 0
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+.....|||++. ...+++.|+.+.++|++.-
T Consensus 361 -----------------~~~~~~lR~~p~-l~~t~~ei~~~~~~l~~~l 391 (395)
T PRK03715 361 -----------------APRPNLLRFMPA-LNVTTEEIDQMIAMLRSVL 391 (395)
T ss_pred -----------------ecCCCEEEEeCC-cccCHHHHHHHHHHHHHHH
Confidence 011357999999 8777777777777776543
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=171.53 Aligned_cols=257 Identities=14% Similarity=0.208 Sum_probs=166.4
Q ss_pred CCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC----CC-CeEEEeCCCchhHHHHHHhhcCc--------
Q 013210 97 FNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS----SG-GHVVAARTLYGGTHALLTHFFPR-------- 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~----~g-d~Vi~~~~~y~~~~~~~~~~~~~-------- 161 (447)
.++...++.++|+++.. .+.++|++||+||+..|++.... +| .+||.....||+........-..
T Consensus 122 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~ 201 (459)
T PRK11522 122 LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFM 201 (459)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCC
Confidence 46667788888988864 35799999999999999985431 22 36899998898865433111000
Q ss_pred ccCeeEEEeCCCCHHHHHHhhcc-----CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC--
Q 013210 162 ACNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-- 230 (447)
Q Consensus 162 ~~g~~~~~v~~~d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~-- 230 (447)
.....+..++..|.+++++.++. +++.+|++|.+....|.+.| ++++.++|++||+++|+||+++++..
T Consensus 202 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG 281 (459)
T PRK11522 202 PLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTG 281 (459)
T ss_pred CCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccc
Confidence 00112345666688888887731 46789999999999999887 99999999999999999999965521
Q ss_pred -----CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh-hhhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 231 -----SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 231 -----~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
.-.....|++ +++|.+|+.-.++ |+++.++++.+.+.... ....+..|++++..++.+.+..++.- ...+
T Consensus 282 ~~~a~e~~gv~PDiv--t~gK~lggG~~Pi-gav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~-~l~~ 357 (459)
T PRK11522 282 KMFACEHENVQPDIL--CLAKALGGGVMPI-GATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQ-NLPA 357 (459)
T ss_pred hhhhhhccCCCCCEE--EechhhhCCCccc-eeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcc-hHHH
Confidence 1112235666 5899999532467 66667778777653211 11223344444444444444444331 3456
Q ss_pred HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 305 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
+..++.++|.+.|+++..+ +|..-. +..|.|.++.+++...+.+..+...|..
T Consensus 358 ~~~~~g~~l~~~L~~l~~~--~~~~i~------------~VrG~Gl~~giel~~~~~~~~i~~~l~~ 410 (459)
T PRK11522 358 QAEQKGDYLLDGFRQLARE--YPDLVQ------------EARGKGMLMAIEFVDNEIGYNFASEMFR 410 (459)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCcee------------eEEeceeEEEEEecCchHHHHHHHHHHH
Confidence 6677777888877654211 110000 1226788999999865556677777765
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=153.15 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHh--CCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHH-HHHHhhcCcccCeeEEEeCCC----
Q 013210 101 VLNLSRQMAALE--GTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTH-ALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 101 ~~~l~~~ia~l~--g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~-~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
.+++++.+++++ +.+.+++++||++|+.++++++..++++|+++.+.|++.. ..+ .. .|.++..++.+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~-~g~~~~~v~~~~~~~ 76 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAA----EL-AGAKPVPVPVDDAGY 76 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHH----Hh-cCCEEEEeccCCCCc
Confidence 468999999999 8888999999999999999999888999999999999887 433 22 68888877754
Q ss_pred -CH--HHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-----CccCCCCeEEEeCCC
Q 013210 174 -DH--EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-----SPARLGADVVVHSIS 245 (447)
Q Consensus 174 -d~--~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-----~~~~~g~di~~~S~s 245 (447)
+. +.+++....++++++++++++|++|...|+++|.++|+++|+++|+|++|..+.. ++...++|+++.|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~ 156 (170)
T cd01494 77 GGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLH 156 (170)
T ss_pred cchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcc
Confidence 11 2454444357899999999999999999999999999999999999999944332 244568999999999
Q ss_pred ccccCCCCeeEEEEEcC
Q 013210 246 KFISGGADIIAGAVCGP 262 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~ 262 (447)
|++++++ . |+++.+
T Consensus 157 K~~~~~~--~-G~l~~~ 170 (170)
T cd01494 157 KNLGGEG--G-GVVIVK 170 (170)
T ss_pred cccCCCc--e-EEEEeC
Confidence 9999854 4 888653
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=168.47 Aligned_cols=292 Identities=12% Similarity=0.156 Sum_probs=183.2
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhhcCc----
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR---- 161 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~---- 161 (447)
..++...++.++|+++.. .+.++|++||+||+..|++.... +| .+||.....||+...........
T Consensus 82 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~ 161 (423)
T PRK05964 82 FTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMH 161 (423)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCcccc
Confidence 345666788889988874 56899999999999999985421 23 58999999998865443211100
Q ss_pred --ccC--eeEEEeCC--CC-----HHHHHHhhc--cCCceEEEEEc-CCCCCccccC----HHHHHHHHHhcCCEEEEeC
Q 013210 162 --ACN--ITTTFVDI--SD-----HEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVVVDN 223 (447)
Q Consensus 162 --~~g--~~~~~v~~--~d-----~~~l~~~i~--~~~t~lV~i~~-~~NptG~v~~----l~~I~~la~~~gi~livD~ 223 (447)
..+ ..+..++. +| ++++++.+. .+++.+|++|. +++..|.+.+ +++|.++|++||+++|+||
T Consensus 162 ~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DE 241 (423)
T PRK05964 162 ALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDE 241 (423)
T ss_pred ccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 000 11233333 24 788888773 24678999998 6888887764 8899999999999999999
Q ss_pred CCCCCCC-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHH---hh--hhhhhcCCCccHHHHHH
Q 013210 224 TFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL---HQ--GALMLLGPTMNPKVAFE 291 (447)
Q Consensus 224 ~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~---~~--~~~~~~g~~~~~~~a~~ 291 (447)
+|+++.. .......|++ +++|.+++++.++ |+++.++++.+.+... .. ...+..++.++..++.+
T Consensus 242 v~tg~gr~G~~~a~~~~~v~pDi~--~~~K~l~gG~~p~-~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a 318 (423)
T PRK05964 242 IATGFGRTGTLFACEQAGVSPDIM--CLSKGLTGGYLPL-AATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANA 318 (423)
T ss_pred hhhCCCcCcchhHHHhcCCCCCee--eeehhhhcCcccc-eEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHH
Confidence 9965532 1112235655 5789998665777 7788899998877531 00 11112233333333333
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---HHHHHHHH
Q 013210 292 LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE---KANRLMNY 368 (447)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~---~~~~l~~~ 368 (447)
.+..++. ....++..++.+++.+.|++... +|.+. +..|.|.++.+++.+.. ....+...
T Consensus 319 ~l~~l~~-~~~~~~~~~~g~~l~~~l~~l~~---~~~i~-------------~vrg~Gl~~~i~l~~~~~~~~~~~l~~~ 381 (423)
T PRK05964 319 SLDLFED-EPVLERVAALSAGLAEGLEPFRD---LPGVA-------------DVRVLGAIGAVELDRPVLERDGPALRAF 381 (423)
T ss_pred HHHHHHh-cCHHHHHHHHHHHHHHHHHhhcc---CCCeE-------------EeecccEEEEEEeccCcchhHHHHHHHH
Confidence 3332211 12445666777778887776521 12211 11257889999997432 25567777
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
|.. .|++. + + ..+.|||++. ...++++|+.+.++|++.-
T Consensus 382 l~~---~Gv~v-~----------~------------------~~~~lR~~p~-l~~t~edId~~v~~l~~al 420 (423)
T PRK05964 382 ALE---RGVLL-R----------P------------------LGNTIYLMPP-YIITAEELDRITDAIVEVA 420 (423)
T ss_pred HHH---CCeEE-E----------e------------------cCCEEEEeCC-cccCHHHHHHHHHHHHHHH
Confidence 764 23221 1 0 0146999999 8778888887777776553
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-18 Score=168.60 Aligned_cols=294 Identities=13% Similarity=0.173 Sum_probs=180.4
Q ss_pred CCCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhcC-CC-CeEEEeCCCchhHHHHHHhhcC----cccCe
Q 013210 95 RHFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLCS-SG-GHVVAARTLYGGTHALLTHFFP----RACNI 165 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~~-~g-d~Vi~~~~~y~~~~~~~~~~~~----~~~g~ 165 (447)
...++...++.++|+++.. .+.++|++||+||+..|++.... .| .+|+.....||+.......... ...+.
T Consensus 79 ~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~ 158 (421)
T PRK09792 79 IVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGF 158 (421)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCC
Confidence 3456666788888888764 25799999999999999976432 23 5789999989886433211100 00111
Q ss_pred -----eEEEeCCC----------CHHHHHHhhc----cCCceEEEEEcCCCCCcccc-C---HHHHHHHHHhcCCEEEEe
Q 013210 166 -----TTTFVDIS----------DHEMVNSAIV----QGRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 166 -----~~~~v~~~----------d~~~l~~~i~----~~~t~lV~i~~~~NptG~v~-~---l~~I~~la~~~gi~livD 222 (447)
.+..++.. +++.+++.++ .+++++|++|.+++++|.+. | +++|.++|++||+++|+|
T Consensus 159 ~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~D 238 (421)
T PRK09792 159 GPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIAD 238 (421)
T ss_pred CCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 12333331 3477888774 24688999999999999765 5 889999999999999999
Q ss_pred CCCCCCCCCc-----cCC--CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc
Q 013210 223 NTFSPLVLSP-----ARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER 295 (447)
Q Consensus 223 ~~~~~~~~~~-----~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~ 295 (447)
|+++++.... ..+ ..| +.|++|.++ +|.++ |++++++++++.+..... ..+..++++.+.++.+.+..
T Consensus 239 Ev~tg~gr~G~~~a~~~~~~~pD--i~t~gK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~a~l~~ 313 (421)
T PRK09792 239 EVQSGFARTGKLFAMDHYADKPD--LMTMAKSLA-GGMPL-SGVVGNANIMDAPAPGGL-GGTYAGNPLAVAAAHAVLNI 313 (421)
T ss_pred ccccCCCCCCchhHHHhcCCCCc--EEEeehhhc-CCCce-EEEEEcHHHHhccCCCCc-CCCCCCCHHHHHHHHHHHHH
Confidence 9996663321 122 345 466899999 57898 888999998877653322 22344555555444444433
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-------HHHHHHHHH
Q 013210 296 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-------EKANRLMNY 368 (447)
Q Consensus 296 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-------~~~~~l~~~ 368 (447)
++.- ...++..+..+++.+.|+++..+ +|.. . ...|.|.++++++.+. .....+...
T Consensus 314 l~~~-~~~~~~~~~g~~l~~~l~~l~~~--~p~v-~------------~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~ 377 (421)
T PRK09792 314 IDKE-SLCERANQLGQRLKNTLIDAKES--VPAI-A------------AVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQR 377 (421)
T ss_pred HHhh-hHHHHHHHHHHHHHHHHHHHHHh--CCCc-c------------eecccceEEEEEecCCccCCcchHHHHHHHHH
Confidence 3221 22334444455555555432110 1110 0 1226799999999743 234556666
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.. .|+ .+. + .|...+.|||.+. ...+++.++.+.++|++.
T Consensus 378 ~~~---~Gv-~i~----------~---------------~g~~~~~irl~P~-l~i~~~ei~~~~~~l~~~ 418 (421)
T PRK09792 378 ALA---QGL-LLL----------T---------------CGAYGNVIRFLYP-LTIPDAQFDAAMKILQDA 418 (421)
T ss_pred HHH---CCc-EEe----------e---------------cCCCCCEEEEeCC-CcCCHHHHHHHHHHHHHH
Confidence 654 232 211 0 0112478999988 656666666666666544
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-18 Score=167.25 Aligned_cols=288 Identities=17% Similarity=0.237 Sum_probs=179.4
Q ss_pred chHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhc----Cc-----ccC
Q 013210 99 PTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF----PR-----ACN 164 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~----~~-----~~g 164 (447)
+...++.++|.++... +.++|++||++||.+|++... ..+..||.....||+.......+- ++ ...
T Consensus 99 e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~ 178 (447)
T COG0160 99 EPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLP 178 (447)
T ss_pred hhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCC
Confidence 4445677777776543 569999999999999998542 234678888888877533321110 00 011
Q ss_pred eeEEEeCCC-----------------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCE
Q 013210 165 ITTTFVDIS-----------------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVT 218 (447)
Q Consensus 165 ~~~~~v~~~-----------------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~ 218 (447)
..+..+|.. ..+.++..+.. .++.++++|.++.+.|.+.+ ++++.++|++||++
T Consensus 179 ~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gil 258 (447)
T COG0160 179 PGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGIL 258 (447)
T ss_pred CCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 224444432 12334443322 35889999999999999975 88999999999999
Q ss_pred EEEeCCCCCCCC-----CccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHH
Q 013210 219 VVVDNTFSPLVL-----SPARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 291 (447)
Q Consensus 219 livD~~~~~~~~-----~~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~ 291 (447)
+|+||+|+++.. .....| .|+++ ++|.+|+ |..+ |.++.++++.+ ...... ..++.|++++..++.+
T Consensus 259 lI~DEVQtG~GRTG~~fa~E~~gv~PDivt--~aK~ig~-G~Pl-~avv~r~ei~~-~~~g~~-~~Tf~GNpva~Aaa~A 332 (447)
T COG0160 259 LIADEVQTGFGRTGKMFAFEHFGVEPDIVT--LAKSLGG-GLPL-SAVVGRAEIMD-WPPGGH-GGTFGGNPVACAAALA 332 (447)
T ss_pred EEEeccccCCCccccchhhhhcCCCCCEEE--ecccccC-CCce-eEEeccHHhcc-cCCccc-CCCCCcCHHHHHHHHH
Confidence 999999966642 233334 56666 8999997 8988 88999999887 433322 2235666665555555
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--------HHHHH
Q 013210 292 LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--------EEKAN 363 (447)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--------~~~~~ 363 (447)
.+..++.. ..+++..+.-+++.+.|.++..+ +|.+. +..|.|.++.+++.. .+.+.
T Consensus 333 vL~vie~e-~L~~~a~~~G~~l~~~L~~l~~~--~~~Ig-------------dVRG~Glm~giE~v~d~~t~~p~~~~~~ 396 (447)
T COG0160 333 VLDVIEEE-NLLERAAELGEYLRDRLEELQEK--HPLIG-------------DVRGLGLMIGVELVKDRDTKEPDAELAA 396 (447)
T ss_pred HHHHHHHc-cHHHHHHHHHHHHHHHHHHHHhh--cCcee-------------cccccceEEEEEEecCCCCCCCCHHHHH
Confidence 55433221 23445556666666666654221 11111 234789999999862 24567
Q ss_pred HHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHH
Q 013210 364 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSR 438 (447)
Q Consensus 364 ~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~ 438 (447)
++++++.. .|++-.+. |...+.|||..- . ++.++.++.|.++|.+
T Consensus 397 ~i~~~~~~---~Glil~~~--------------------------G~~~nviRi~PP-L~is~e~~d~~l~il~~al~~ 445 (447)
T COG0160 397 KIVARAFE---RGLLLLTC--------------------------GPHGNVLRILPP-LTISDEELDEGLDILEEALKE 445 (447)
T ss_pred HHHHHHHH---cCCEEecc--------------------------CCCCcEEEEeCC-cccCHHHHHHHHHHHHHHHHh
Confidence 77777775 34332222 333578888877 5 4445555555555543
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=167.25 Aligned_cols=219 Identities=13% Similarity=0.136 Sum_probs=145.3
Q ss_pred CCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcC----cccCe-
Q 013210 96 HFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP----RACNI- 165 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~----~~~g~- 165 (447)
..++...++.++|+++.. .+.++|++||+||+..|++... ....+|+.....||+........-. ...+.
T Consensus 80 ~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~ 159 (421)
T PRK06777 80 VPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFG 159 (421)
T ss_pred cCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCC
Confidence 345666778888888764 3679999999999999998542 2235799999999887544321100 00000
Q ss_pred ----eEEEeCCC----------CHHHHHHhhc----cCCceEEEEEcCCCCCccc-cC---HHHHHHHHHhcCCEEEEeC
Q 013210 166 ----TTTFVDIS----------DHEMVNSAIV----QGRTKVLYFESISNPTLAV-AN---IPELSRLAHDKGVTVVVDN 223 (447)
Q Consensus 166 ----~~~~v~~~----------d~~~l~~~i~----~~~t~lV~i~~~~NptG~v-~~---l~~I~~la~~~gi~livD~ 223 (447)
.+..++.. +++.+++.++ .+++.+|++|.+.++.|.. .| +++|.++|++||+++|+||
T Consensus 160 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DE 239 (421)
T PRK06777 160 PFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADE 239 (421)
T ss_pred CCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 11222211 2566777763 2468899999999999964 44 8899999999999999999
Q ss_pred CCCCCCCC-----ccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC
Q 013210 224 TFSPLVLS-----PARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI 296 (447)
Q Consensus 224 ~~~~~~~~-----~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~ 296 (447)
+|+++... ...++ .|++ +++|.++ +|.++ |++++++++++.+..... ..+..++.+.+.++...+..+
T Consensus 240 v~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~~p~~~aaa~a~L~~~ 314 (421)
T PRK06777 240 VQTGFARTGKLFAMEYYDVKPDLI--TMAKSLG-GGMPI-SAVVGRAEVMDAPAPGGL-GGTYAGNPLAVAAALAVLDVI 314 (421)
T ss_pred hhhCCccCCchhhhhhcCCCCCEE--eeehhhc-CCCce-EEEEEcHHHHhccCCCCC-CCCCCcCHHHHHHHHHHHHHH
Confidence 99665321 11223 5655 6999999 68998 889999988877754332 223445555554554444433
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 297 PHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
+. ....++..++.+++.+.|++.
T Consensus 315 ~~-~~l~~~~~~~g~~l~~~L~~l 337 (421)
T PRK06777 315 AE-EKLCQRALILGAHLVEVLEKA 337 (421)
T ss_pred Hh-ccHHHHHHHHHHHHHHHHHHH
Confidence 22 335566777788888888764
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=165.02 Aligned_cols=288 Identities=10% Similarity=0.036 Sum_probs=185.2
Q ss_pred CchHHHHHHHHHHHhCCC---eEEEe-CChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 98 NPTVLNLSRQMAALEGTE---AAYCT-ASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~---~~~~t-sggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
...+++.++.++++++++ .++|+ +|||.++++++.+++.+ +.+++...+|...........+. .+ ++..++.+
T Consensus 40 ~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~-~~-~~~~~~~~ 116 (361)
T TIGR01366 40 KNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPW-LG-EPIIVTAD 116 (361)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhc-cC-CceEEecC
Confidence 456789999999999972 47775 77999999999988743 44556666776555444333332 23 45555544
Q ss_pred CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCC
Q 013210 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGG 251 (447)
Q Consensus 174 d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~ 251 (447)
..+.++..+ .+++++|.+.+..|.||.++|+++| +|++|+++++|.++ +...++..+ +|++++|.+|++|++
T Consensus 117 ~~~~~~~~~-~~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~ 190 (361)
T TIGR01366 117 PGSAPEPQA-DPGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASD 190 (361)
T ss_pred CCCCCCCcc-CCCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCC
Confidence 333444445 6789999999999999999999988 58899999999998 455556553 899999999999998
Q ss_pred CCeeEEEEEcChHHHHHHHHHhhh------hh-----------hhcCCCccHHHH---HHHHccC---CcHHHHHHHHHH
Q 013210 252 ADIIAGAVCGPANLVNSMMDLHQG------AL-----------MLLGPTMNPKVA---FELSERI---PHLGLRMKEHCH 308 (447)
Q Consensus 252 g~~igG~l~~~~~~~~~l~~~~~~------~~-----------~~~g~~~~~~~a---~~~~~~~---~~l~~~~~~~~~ 308 (447)
+. + ++++.+++.++++.....+ .. ..+.++++.... ..++..+ ..+..+.+++.+
T Consensus 191 ~G-l-~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~ 268 (361)
T TIGR01366 191 GG-L-WLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTAD 268 (361)
T ss_pred Cc-e-EEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 64 3 6667788777665422110 00 011122222211 1122222 125556688889
Q ss_pred HHHHHHHHHHhCCC-eeeCCCCC-CCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcc
Q 013210 309 RALIFARRMKKLGL-KVLYPGLE-DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 309 ~~~~l~~~L~~~~~-~v~~p~~~-~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
+++++.++|++.+. ++..+... ..+ . +..|.+....+...+...|... | +.+..|..
T Consensus 269 l~~~l~~~l~~~~~~~~~~~~~~~~s~--------------~--v~~v~~~~g~~~~~v~~~L~~~---g-I~i~~~~~- 327 (361)
T TIGR01366 269 SSSRLYSWAQERPYATPFVTDPGKRSQ--------------V--VGTIDFVDDIDAATVAKILRAN---G-IVDTEPYR- 327 (361)
T ss_pred HHHHHHHHHHhCCCcccCCCChhhccc--------------c--eEEEECCCccCHHHHHHHHHHC---C-CeeccCcc-
Confidence 99999999998874 43322110 011 1 2334444333355676777652 3 33322100
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.++ ...+|+|+. ..++.+.++.|.++|+++.
T Consensus 328 --------------------~l~--~~~vRis~~-~~~t~~di~~l~~al~~~~ 358 (361)
T TIGR01366 328 --------------------KLG--RNQLRVAMF-PAIDPDDVEALTECVDWVV 358 (361)
T ss_pred --------------------ccC--CCcEEEEcC-CCCCHHHHHHHHHHHHHHH
Confidence 011 357999999 9999999999999998764
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-17 Score=162.86 Aligned_cols=255 Identities=13% Similarity=0.167 Sum_probs=155.0
Q ss_pred CCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhc----CcccCe-
Q 013210 96 HFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF----PRACNI- 165 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~----~~~~g~- 165 (447)
..++...++.++|+++.. .+.++|++||+||+..|++... ....+|+.....||+........- +...+.
T Consensus 73 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~ 152 (420)
T TIGR00700 73 TPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFG 152 (420)
T ss_pred cCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCC
Confidence 445666778888888864 2579999999999999997542 223578888988988654332110 000111
Q ss_pred ----eEEEeCCC----------------CHHHHHHhhc----cCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCC
Q 013210 166 ----TTTFVDIS----------------DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV 217 (447)
Q Consensus 166 ----~~~~v~~~----------------d~~~l~~~i~----~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi 217 (447)
.+..++.. +++.+++.+. .+++.+|++|.++..+|.+.+ +++|.++|++||+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gi 232 (420)
T TIGR00700 153 PFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGI 232 (420)
T ss_pred CCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 12222221 2456666552 357899999999999998876 8899999999999
Q ss_pred EEEEeCCCCCCCCCc-----cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHH
Q 013210 218 TVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292 (447)
Q Consensus 218 ~livD~~~~~~~~~~-----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~ 292 (447)
++|+||+|+++.... ...++...+.+++|.++ +|.++ |++++++++++.+..... ..+..++.+++.++.+.
T Consensus 233 llI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~-~G~pi-g~v~~~~~i~~~~~~~~~-~~T~~~~pl~~aaa~a~ 309 (420)
T TIGR00700 233 VFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLA-DGLPL-SGVTGRAEIMDAPAPGGL-GGTYAGNPLACAAALAV 309 (420)
T ss_pred EEEEEecccCCcccchhHHHhhcCCCCCEEEeecccc-CCcce-EEEEecHHHHhhcCCCCc-CCCCCcCHHHHHHHHHH
Confidence 999999997664321 12233333445999999 78999 999999998887753322 22344454444444343
Q ss_pred HccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-------CHHHHH
Q 013210 293 SERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-------TEEKAN 363 (447)
Q Consensus 293 ~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-------~~~~~~ 363 (447)
+..+ ..+. ++..+..+++.+.|++...+ +|... ...|.|.++++++. ....+.
T Consensus 310 l~~l~~~~~~---~~~~~~g~~l~~~L~~l~~~--~~~~~-------------~vrg~G~~~~i~~~~~~~~~~~~~~~~ 371 (420)
T TIGR00700 310 LAIIESEGLI---ERARQIGRLVTDRLTTLKAV--DPRIG-------------DVRGLGAMIAVELVDPGTTEPDAGLAE 371 (420)
T ss_pred HHHHHhccHH---HHHHHHHHHHHHHHHHHHhh--CCCEE-------------EeeccceEEEEEEecCCCCCccHHHHH
Confidence 3322 2232 33344444455555432110 01100 11156889999883 223345
Q ss_pred HHHHHhhc
Q 013210 364 RLMNYLQN 371 (447)
Q Consensus 364 ~l~~~l~~ 371 (447)
.+...+..
T Consensus 372 ~l~~~~~~ 379 (420)
T TIGR00700 372 RIATAAHA 379 (420)
T ss_pred HHHHHHHH
Confidence 66665554
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-17 Score=163.66 Aligned_cols=281 Identities=17% Similarity=0.134 Sum_probs=168.7
Q ss_pred CCCCchhhHhhhcCCCCCCCCccccccccccccccCCH-HHHHHhhcCCCCC--CCCCccccCCCCchHHHHHH----HH
Q 013210 36 AAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEP-ETMRRMFAGELGP--DRDFFIYSRHFNPTVLNLSR----QM 108 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~-~~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~l~~----~i 108 (447)
++..||...-+--.....+.. .-.+.+|-+++.+.+ +.+...+..+|+. |.+.|.-|. ..++++|+ +.
T Consensus 15 ~~~~d~~~~~~i~~e~~~q~~--~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~---~~~d~lE~~~~~~~ 89 (475)
T PLN03226 15 LEEVDPEIADIIEKEKRRQWK--GLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGN---EYIDQIETLCQKRA 89 (475)
T ss_pred hhhcCHHHHHHHHHHHHHHHc--CeeEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCC---hhHHHHHHHHHHHH
Confidence 555677654443322212222 334678888888887 7777777666643 222232222 24444544 46
Q ss_pred HHHhCCCe-EEEe----CChHHHHHHHHHHhcCCCCeEEEeCCCchhHH--HHHHhhcC-cccCee--EEEeCCC-----
Q 013210 109 AALEGTEA-AYCT----ASGMSAISSVLMQLCSSGGHVVAARTLYGGTH--ALLTHFFP-RACNIT--TTFVDIS----- 173 (447)
Q Consensus 109 a~l~g~~~-~~~t----sggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~--~~~~~~~~-~~~g~~--~~~v~~~----- 173 (447)
.++++.+. .+.+ .||+.||..++.+++++||+|+..+..++++. ........ ...+.. +..+..+
T Consensus 90 ~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~ 169 (475)
T PLN03226 90 LEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGL 169 (475)
T ss_pred HHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCC
Confidence 66677654 3323 89999999999999999999998654333222 11111100 001221 1122223
Q ss_pred -CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCC-C----CccCCCCeEEEeCCCc
Q 013210 174 -DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-L----SPARLGADVVVHSISK 246 (447)
Q Consensus 174 -d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~-~----~~~~~g~di~~~S~sK 246 (447)
|+++|++.+...++++|++. .++ +|...|+++|.++|+++|+++++|++| .++. . ++.. ++|++++|+||
T Consensus 170 iD~d~Le~~l~~~~pklIv~~-~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~-~~Div~~t~hK 246 (475)
T PLN03226 170 IDYDKLEKKAMLFRPKLIIAG-ASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFE-YCDVVTTTTHK 246 (475)
T ss_pred cCHHHHHHHHhhcCCeEEEEe-cCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCC-CCeEEEecCcc
Confidence 99999998844567777662 223 678889999999999999999999998 4332 2 2222 69999999999
Q ss_pred cccCCCCeeEEEEEcChHHH-----------H---HHHHHhhhhhhhcCCCccHHHHHH-HHccC--CcHHHHHHHHHHH
Q 013210 247 FISGGADIIAGAVCGPANLV-----------N---SMMDLHQGALMLLGPTMNPKVAFE-LSERI--PHLGLRMKEHCHR 309 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~~~~~-----------~---~l~~~~~~~~~~~g~~~~~~~a~~-~~~~~--~~l~~~~~~~~~~ 309 (447)
++++|. ||+++.+++.+ + .+...+. .....+..+...++.. ++..+ ..+....++..++
T Consensus 247 ~L~GP~---Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~-~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~n 322 (475)
T PLN03226 247 SLRGPR---GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVF-PGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKAN 322 (475)
T ss_pred cccCCC---ceEEEEchhhcccccCCCccHHHHHHHhccccC-CccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 995442 47777776543 1 1111111 1112222222222222 22222 2345567888999
Q ss_pred HHHHHHHHHhCCCeeeCCC
Q 013210 310 ALIFARRMKKLGLKVLYPG 328 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~ 328 (447)
+++|++.|++.|+++..++
T Consensus 323 a~~L~~~L~~~G~~l~~~~ 341 (475)
T PLN03226 323 AAALANRLMSKGYKLVTGG 341 (475)
T ss_pred HHHHHHHHHhCCCEEEcCC
Confidence 9999999999888877654
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=166.70 Aligned_cols=253 Identities=17% Similarity=0.202 Sum_probs=156.6
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcC-----c-ccC--e
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP-----R-ACN--I 165 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~-----~-~~g--~ 165 (447)
++...++.++|+++.+. +.++|++||+||+..|++... ....+|+.....||+........-. + ..+ .
T Consensus 83 ~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~ 162 (443)
T PRK08360 83 PVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELS 162 (443)
T ss_pred cHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCC
Confidence 45567788888888754 579999999999999998542 2235788888888876422211100 0 011 1
Q ss_pred eEEEeCCC-----------------CHHHHHHhhc----cCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEE
Q 013210 166 TTTFVDIS-----------------DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVV 220 (447)
Q Consensus 166 ~~~~v~~~-----------------d~~~l~~~i~----~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~li 220 (447)
.+.+++.. +++.+++.++ .+++++|++|..+||+|.+.+ +++|.++|++||+++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI 242 (443)
T PRK08360 163 DVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLV 242 (443)
T ss_pred CcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 12333221 2344555553 257899999999999998875 8899999999999999
Q ss_pred EeCCCCCCCCCc-----c--CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHH
Q 013210 221 VDNTFSPLVLSP-----A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS 293 (447)
Q Consensus 221 vD~~~~~~~~~~-----~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~ 293 (447)
+||+|+++.... . ....|++ +++|.++ +|.++ |++++++++++.+..... ..+..++.+.+.++...+
T Consensus 243 ~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~~p~~~aaa~a~l 317 (443)
T PRK08360 243 VDEVQSGLGRTGKWFAIEHFGVEPDII--TLGKPLG-GGLPI-SATIGRAEIMDSLPPLAH-AFTLSGNPVASAAALAVI 317 (443)
T ss_pred EeccccCCCcCccchhhhhcCCCCCEE--Eeccccc-CCcee-EEEEEcHHHHhhhcCCCC-CCCCCcCHHHHHHHHHHH
Confidence 999996553211 1 2234655 5799999 68898 888999998887764322 222334444444444444
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------HHHHHH
Q 013210 294 ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRL 365 (447)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------~~~~~l 365 (447)
..++.- ...++..++.+++.+.|++...+ +|... +..|.|.++.++|... ..+..+
T Consensus 318 ~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~--~~~v~-------------~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~ 381 (443)
T PRK08360 318 EEIEEK-NLLKRAEKLGNYTKKRLEEMKKK--HELIG-------------DVRGIGLMIGVDLVKDRETKERAYEEAAKV 381 (443)
T ss_pred HHHHHc-CHHHHHHHHHHHHHHHHHHHHHh--CCCee-------------eeeccceEEEEEEecCCcccCccHHHHHHH
Confidence 433221 23455566666676666543111 11000 1226788999998521 234556
Q ss_pred HHHhhc
Q 013210 366 MNYLQN 371 (447)
Q Consensus 366 ~~~l~~ 371 (447)
...+..
T Consensus 382 ~~~l~~ 387 (443)
T PRK08360 382 VWRAWE 387 (443)
T ss_pred HHHHHH
Confidence 666654
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-19 Score=168.58 Aligned_cols=225 Identities=22% Similarity=0.194 Sum_probs=159.5
Q ss_pred cccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 92 ~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.|| .++...++++++++++|.+.++|++|||.||..+++.++++++.|++..+.|...++.- ......|.++..++
T Consensus 24 ~Yg--~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~g--a~~~~~G~~~~~l~ 99 (290)
T PF01212_consen 24 AYG--EDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETG--AIEELSGAKLIPLP 99 (290)
T ss_dssp CTT--SSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTT--HHHHHTTCEEEEEB
T ss_pred ccC--CChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccc--hhhHhcCcEEEECC
Confidence 355 47889999999999999999999999999999999999999999999998765333221 11012577777765
Q ss_pred CC-----CHHHHHHhhcc-----CCceEEEEEcCCCCC-ccccC---HHHHHHHHHhcCCEEEEeCCC-C----CCCCCc
Q 013210 172 IS-----DHEMVNSAIVQ-----GRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTF-S----PLVLSP 232 (447)
Q Consensus 172 ~~-----d~~~l~~~i~~-----~~t~lV~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~-~----~~~~~~ 232 (447)
.. ++++|++.+.. .++++|++++++|.. |++++ +++|.++||+||+.+|+|.+- . .....+
T Consensus 100 ~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~ 179 (290)
T PF01212_consen 100 SDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSL 179 (290)
T ss_dssp ECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHH
T ss_pred CcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccH
Confidence 43 78999998854 468999999999864 77775 668889999999999999984 1 111122
Q ss_pred cC--CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCcc---HHHH-----HHHHccCCcHHHH
Q 013210 233 AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN---PKVA-----FELSERIPHLGLR 302 (447)
Q Consensus 233 ~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~---~~~a-----~~~~~~~~~l~~~ 302 (447)
.+ .++|++.+|++|.++.++ |++|++++++++....++. ..|..+. ..++ ...+..++....+
T Consensus 180 ~e~~~~~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k----~~gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~ 252 (290)
T PF01212_consen 180 AEIAAGADSVSFGGTKNGGAPG---GAVLAGNKEFIAKARRQRK----RLGGGMRQAGVLAAAELYQFAALRALELWLER 252 (290)
T ss_dssp HHHHTTSSEEEEETTSTT-SSS---EEEEEESHHHHHHHHHHHH----HHTHHHHHTTHHHHHHHHHHHHHCHEECSHHH
T ss_pred HHHhhhCCEEEEEEEccccccc---ceEEEechHHHHHHHHHHH----HhccCeeecceeeeechhhHHHHHHHHhhHHH
Confidence 22 379999999999999875 6888999998766555444 2222211 1122 1333444444557
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCC
Q 013210 303 MKEHCHRALIFARRMKKLGLKVLYP 327 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~~~v~~p 327 (447)
..+..+++++|.+.|+..+..+..|
T Consensus 253 ~~~~~~~A~~La~~l~~~~~~~~~~ 277 (290)
T PF01212_consen 253 ARHANAMAKRLAAGLEALGGVLPRP 277 (290)
T ss_dssp HHCHHHHHHCHHHCHHEECEEEETT
T ss_pred HHHHHHHHHHHHHHHHHCCCcccCC
Confidence 7778888999999999887765544
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-17 Score=160.16 Aligned_cols=209 Identities=14% Similarity=0.147 Sum_probs=154.9
Q ss_pred hHHHHHHHHHHHhCCC---eEEEeCChH-HHHHHHHHHhcC---CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 100 TVLNLSRQMAALEGTE---AAYCTASGM-SAISSVLMQLCS---SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~---~~~~tsggt-~A~~~al~~l~~---~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..+++++.+++++|.+ .++++++|| .++.+++.++-. +||.||++...|.++...+. ..|.++++++.
T Consensus 106 l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~-----~~G~~pv~Vd~ 180 (444)
T TIGR03531 106 LTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAIS-----TAGFEPRVIET 180 (444)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHH-----HcCCeEEEeee
Confidence 4578999999999987 699999999 688888877642 58999999999998887773 36888888873
Q ss_pred --C------CHHHHHHhhccC---CceEEEEEcCC-CCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC-C------Ccc
Q 013210 173 --S------DHEMVNSAIVQG---RTKVLYFESIS-NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-L------SPA 233 (447)
Q Consensus 173 --~------d~~~l~~~i~~~---~t~lV~i~~~~-NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~------~~~ 233 (447)
+ |+++|+++| ++ ++.++++.+++ .+.|.+.|+++|+++|++||+++|+|++|+... . ...
T Consensus 181 ~~d~~~~~iD~e~Le~aI-t~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~ 259 (444)
T TIGR03531 181 VLDGDELTTDVEDIERAI-EEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAI 259 (444)
T ss_pred eecCcCCCcCHHHHHHHH-HhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccc
Confidence 1 899999999 44 45666666554 555688899999999999999999999995321 1 122
Q ss_pred CCC-CeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHH
Q 013210 234 RLG-ADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHR 309 (447)
Q Consensus 234 ~~g-~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~ 309 (447)
..| +|+++.|+||++..+++ ||+++. ++++++.+.....+ .....+ .+.++..+. +.+.+.+.+++..++
T Consensus 260 ~~Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~y~g---~~~~s~-~~~~~~~ll~~G~~g~~~li~~~~~~ 333 (444)
T TIGR03531 260 KVGRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKSYPG---RASASP-SLDVLITLLSLGSKGYLELLKERKEM 333 (444)
T ss_pred cccCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHhccC---CCCChH-HHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 344 69999999999998775 577755 77888777654331 111222 233333332 446677888888999
Q ss_pred HHHHHHHHHhC
Q 013210 310 ALIFARRMKKL 320 (447)
Q Consensus 310 ~~~l~~~L~~~ 320 (447)
++++.+.|++.
T Consensus 334 a~~l~~~L~~l 344 (444)
T TIGR03531 334 YKYLKELLQKL 344 (444)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-16 Score=141.93 Aligned_cols=219 Identities=20% Similarity=0.274 Sum_probs=170.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
..|.+..+-+.+|+++|.+.+-+|+|+.+|-.+++.+++++||-|++....|..++-... + .|.++..||..
T Consensus 59 ~kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAE----r-agl~v~eVp~tg~P 133 (382)
T COG1103 59 TKPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAE----R-AGLNVAEVPNTGYP 133 (382)
T ss_pred cCCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHH----h-cCCeEEecCCCCCC
Confidence 346778888889999999999999999999999999999999999999999887776653 3 68888888754
Q ss_pred ----CHHHHHHhhc---c---CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEE
Q 013210 174 ----DHEMVNSAIV---Q---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVV 241 (447)
Q Consensus 174 ----d~~~l~~~i~---~---~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~ 241 (447)
+++...+.|+ + ..+.+..+.++....|.+.|.++++++|+++|++++...+| +.++.+..+.|+|+++
T Consensus 134 ey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiV 213 (382)
T COG1103 134 EYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIV 213 (382)
T ss_pred ceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEE
Confidence 5555444441 1 34788899999999999999999999999999999999999 6678888899999999
Q ss_pred eCCCccccCCCCeeEEEEEcChHHHHHHHHHhh-----hhhhhcCCCccHHHHHHHHccCCcHHHHHHHH---HHHHHHH
Q 013210 242 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIPHLGLRMKEH---CHRALIF 313 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-----~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~---~~~~~~l 313 (447)
+|.||+++..+ ++ |++..+.++.+.+.+... .-....|.+.-......++....+..+|+++. -+.++++
T Consensus 214 gSGHKsmAAs~-Pi-Gvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~f 291 (382)
T COG1103 214 GSGHKSMAASA-PI-GVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWF 291 (382)
T ss_pred ecCccchhccC-Ce-eEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999666 46 999999998877644321 01113344432222333444667777777665 5677889
Q ss_pred HHHHHhCCC
Q 013210 314 ARRMKKLGL 322 (447)
Q Consensus 314 ~~~L~~~~~ 322 (447)
.+.|.+++.
T Consensus 292 v~elEkigg 300 (382)
T COG1103 292 VAELEKIGG 300 (382)
T ss_pred HHHHHHhhh
Confidence 999988863
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-16 Score=158.39 Aligned_cols=286 Identities=16% Similarity=0.180 Sum_probs=183.1
Q ss_pred cccccccccccCCH-HHHHHhhcCCCC--CCCCCccccCCCCchHHH-HHHHHHHHhCCCe----E-EEeCChHHHHHHH
Q 013210 60 MSIEASATFTVMEP-ETMRRMFAGELG--PDRDFFIYSRHFNPTVLN-LSRQMAALEGTEA----A-YCTASGMSAISSV 130 (447)
Q Consensus 60 ~pi~~att~~~~~~-~~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~-l~~~ia~l~g~~~----~-~~tsggt~A~~~a 130 (447)
-.+.+|-+++.+.+ +.+-..+.++|. -|..-|+-|-..-..++. +.++..+++|++. + +---||+.||.++
T Consensus 151 l~LIASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV 230 (586)
T PLN02271 151 IELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAV 230 (586)
T ss_pred eeeccccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHH
Confidence 35677888887776 555556666553 222222222211122333 3345556788654 2 2233999999999
Q ss_pred HHHhcCCCCeEEEeCCCchhHHHHHH-----hhcCcccCeeEEEe--CCC------CHHHHHHhhccCCceEEEEEcCCC
Q 013210 131 LMQLCSSGGHVVAARTLYGGTHALLT-----HFFPRACNITTTFV--DIS------DHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 131 l~~l~~~gd~Vi~~~~~y~~~~~~~~-----~~~~~~~g~~~~~v--~~~------d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
+.++++|||+|+..+..|++...... ..... .|..+..+ +.+ |.+++++.....++++|++....+
T Consensus 231 ~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~-sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Say 309 (586)
T PLN02271 231 YTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSG-ASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSY 309 (586)
T ss_pred HHHhcCCCCEEEEecCCCCCchhccccccccccccc-ccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhc
Confidence 99999999999999999988765431 00111 35433333 232 899999844378999999988788
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-CCCC-C----CccCCCCeEEEeCCCccccCCCCeeEEEEEcChH-------
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-L----SPARLGADVVVHSISKFISGGADIIAGAVCGPAN------- 264 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~-~----~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~------- 264 (447)
| ...|+++|.++|+++|+++++|.+| .++. . +|.. ++|++++|.||++.||- ||+++.+++
T Consensus 310 p--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~-~aDvvt~TTHKtLrGPr---GG~I~~r~~~~~~~~g 383 (586)
T PLN02271 310 P--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFD-YCDIVTSTTHKSLRGPR---GGIIFYRKGPKLRKQG 383 (586)
T ss_pred c--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCc-CCcEEEeCCcccCCCCC---ceEEEecccccccccC
Confidence 7 7789999999999999999999999 4443 1 3433 59999999999997663 466655542
Q ss_pred -------------HHHHHHHHhhhhhhhcCCCccHHHHHHH-Hc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013210 265 -------------LVNSMMDLHQGALMLLGPTMNPKVAFEL-SE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 328 (447)
Q Consensus 265 -------------~~~~l~~~~~~~~~~~g~~~~~~~a~~~-~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~ 328 (447)
+.+++...... ....|+.+...++.++ +. ....+.+..++..+|++.|++.|.+.|+++..-+
T Consensus 384 ~~gs~s~~~~~~d~~~kI~~aVfP-glqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~~vv~gg 462 (586)
T PLN02271 384 MLLSHGDDNSHYDFEEKINFAVFP-SLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGG 462 (586)
T ss_pred CccccccccccHHHHHHhhcccCC-ccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCCeEeeCC
Confidence 33444332211 1233333444333332 22 2234567888899999999999999999877544
Q ss_pred CCCCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013210 329 LEDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 371 (447)
Q Consensus 329 ~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~l~~~l~~ 371 (447)
... | ++.+.+. +...+++.++...+
T Consensus 463 Tdn---H---------------lvLvDl~~~g~~G~~ae~~Le~~~I 491 (586)
T PLN02271 463 TDN---H---------------LLLWDLTTLGLTGKNYEKVCEMCHI 491 (586)
T ss_pred CCc---c---------------eeeecCcccCCCHHHHHHHHHHcCe
Confidence 221 1 6677764 24456666665553
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-17 Score=164.90 Aligned_cols=293 Identities=13% Similarity=0.124 Sum_probs=178.4
Q ss_pred CCchHHHHHHHHHHHh--C--C-CeEEE-eCChHHHHHHHHHHhcC-C-CCeEEEeCCCchhHHHHHHhhc-----Cccc
Q 013210 97 FNPTVLNLSRQMAALE--G--T-EAAYC-TASGMSAISSVLMQLCS-S-GGHVVAARTLYGGTHALLTHFF-----PRAC 163 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~--g--~-~~~~~-tsggt~A~~~al~~l~~-~-gd~Vi~~~~~y~~~~~~~~~~~-----~~~~ 163 (447)
.++...++.++|+++. + . ..++| ++||+||+..|++.... + .++|+.....||+......... ....
T Consensus 76 ~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~ 155 (412)
T TIGR02407 76 ATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGA 155 (412)
T ss_pred CcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCC
Confidence 3555667888888763 1 2 24666 48999999999986532 2 3579999999988754432110 1101
Q ss_pred C---eeEEEeCC--------CCHHHHHHhhcc-----CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeC
Q 013210 164 N---ITTTFVDI--------SDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDN 223 (447)
Q Consensus 164 g---~~~~~v~~--------~d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~ 223 (447)
+ ..+.+++. ++++.+++.+.+ +++.+|++|.+.++.|.+.+ +++|.++|++||+++|+||
T Consensus 156 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE 235 (412)
T TIGR02407 156 GVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDD 235 (412)
T ss_pred CCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 1 12344443 246778877732 45789999999999998643 8899999999999999999
Q ss_pred CCCCCC-------CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-
Q 013210 224 TFSPLV-------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER- 295 (447)
Q Consensus 224 ~~~~~~-------~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~- 295 (447)
+|+++. +....+..|+++ ++|.+++.|.++ |+++.++++ +.+..... ..+..|+.++..++.+.+..
T Consensus 236 V~tG~GRtG~~~a~~~~~v~PDi~~--~~K~lg~~G~pi-gav~~~~~~-~~~~~~~~-~~T~~gnpl~~aaa~a~l~~~ 310 (412)
T TIGR02407 236 IQAGCGRTGTFFSFEPAGIEPDIVC--LSKSISGYGLPL-ALTLIKPEL-DVWKPGEH-NGTFRGNNLAFVTATAALEYY 310 (412)
T ss_pred hhhCCCccchhHHhcccCCCCCEEE--echhccCCccce-eEEEEchhh-hccCCCcc-CCCCCccHHHHHHHHHHHHHH
Confidence 996552 222334567665 789999658888 888887775 44322111 12233333333333333332
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013210 296 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 375 (447)
Q Consensus 296 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~ 375 (447)
++. ....++..+..+++.+.|+..... +|.... ...|.|.+++++++.......+...+.. .
T Consensus 311 i~~-~~l~~~~~~~g~~l~~~l~~l~~~--~~~~~~------------~vrg~Gl~~~l~l~~~~~~~~~~~~~~~---~ 372 (412)
T TIGR02407 311 WSD-DAFEKAVQRKSEIIQERLDRIVAE--YPELIK------------QVRGRGLMQGIECGDGDLAGKIAKAAFE---N 372 (412)
T ss_pred hcc-cHHHHHHHHHHHHHHHHHHHHHhh--CCCceE------------eeecceeEEEEEecChHHHHHHHHHHHH---C
Confidence 222 223344555556666666542100 010000 1125788999999876556677777765 2
Q ss_pred ccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 376 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 376 g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
|+ .+... +...+.|||++. ...+++.++.+.++|++.
T Consensus 373 Gv-~v~~~-------------------------~~~~~~lr~~p~-l~~t~~~i~~~~~~l~~~ 409 (412)
T TIGR02407 373 GL-IIETS-------------------------GPNDEVIKLLPP-LTIDEETLQQGLDILEQA 409 (412)
T ss_pred CC-EEecc-------------------------CCCCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 32 22111 112367999999 877777777777777654
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-16 Score=160.42 Aligned_cols=289 Identities=12% Similarity=0.149 Sum_probs=174.1
Q ss_pred CchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCc----ccC----
Q 013210 98 NPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR----ACN---- 164 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~----~~g---- 164 (447)
++...++.+.++++.+. +.++|++||++|+..+++... ....+|+...+.||+....+...... ..|
T Consensus 83 ~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~ 162 (425)
T PRK08088 83 YEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLM 162 (425)
T ss_pred CHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCC
Confidence 45556788888887653 579999999999999987542 23457888899998876544221110 011
Q ss_pred ---eeEEEeCC--C------CHHHHHHhhc----cCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCC
Q 013210 165 ---ITTTFVDI--S------DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTF 225 (447)
Q Consensus 165 ---~~~~~v~~--~------d~~~l~~~i~----~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~ 225 (447)
+....++. . ++++|+++++ .++.++|++|.+.+..|.+.+ +++|.++|++||+++|+||+|
T Consensus 163 ~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~ 242 (425)
T PRK08088 163 PGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQ 242 (425)
T ss_pred CCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 11111111 1 1556888773 256889999998877777765 889999999999999999999
Q ss_pred CCCCCCc-----cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHH
Q 013210 226 SPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG 300 (447)
Q Consensus 226 ~~~~~~~-----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~ 300 (447)
+++.... ...+.+..+.|++|.++ +|.|+ ||+++++++++.+..... ..+..++.+.+.++...+..... .
T Consensus 243 ~g~g~~g~~~~~~~~~~~pdi~s~sK~l~-~G~ri-g~v~~~~~~~~~~~~~~~-~~t~~~~~~~~~a~~~~l~~~~~-~ 318 (425)
T PRK08088 243 TGAGRTGTLFAMEQMGVAADLTTFAKSIA-GGFPL-AGVTGRAEVMDAIAPGGL-GGTYAGNPIACAAALAVLKVFEQ-E 318 (425)
T ss_pred cCCCcCcchhHHhhcCCCCCEEEEecccc-CCCcc-eeeEecHHHHhhcCCCCC-CCCCCcCHHHHHHHHHHHHHHHh-c
Confidence 6553221 12345555788999999 68998 999999999888764332 22233444444444444432211 1
Q ss_pred HHHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------CHHHHHHHHHH
Q 013210 301 LRMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNY 368 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~~~~~~~l~~~ 368 (447)
...++.++..+++.+.|+ ..+. +.. ..|.|.++|+.+. +......+...
T Consensus 319 ~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~------------------v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~ 379 (425)
T PRK08088 319 NLLQKANALGEKLKDGLLAIAEKHPE-IGD------------------VRGLGAMIAIELFEDGDHSKPNAKLTAQIVAR 379 (425)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCC-eEE------------------EeccceEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 122233333333333333 2332 110 1146889999993 23345667766
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.. .|++..+.+ ...+.|||+++ ...+++.|+...+.|.+.
T Consensus 380 ~~~---~Gv~~~~~~--------------------------~~~~~iRl~~~-~~~t~~ei~~~i~~l~~~ 420 (425)
T PRK08088 380 ARD---KGLILLSCG--------------------------PYYNVLRILVP-LTIEDAQIRQGLEIIAQC 420 (425)
T ss_pred HHh---CCCEEecCC--------------------------CCCCEEEEECC-CCcCHHHHHHHHHHHHHH
Confidence 664 232211101 11367999999 655566666555555544
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=161.40 Aligned_cols=256 Identities=15% Similarity=0.127 Sum_probs=156.3
Q ss_pred CCchHHHHHHHHHHHh----CCC-eEEE-eCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhh-----cCccc
Q 013210 97 FNPTVLNLSRQMAALE----GTE-AAYC-TASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF-----FPRAC 163 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~----g~~-~~~~-tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~-----~~~~~ 163 (447)
.++...++.++++++. +.+ .++| ++||+||+..|++... ....+||.....||+........ .....
T Consensus 80 ~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~ 159 (425)
T PRK09264 80 HTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGA 159 (425)
T ss_pred CcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCC
Confidence 3555667888888764 233 4666 4899999999998643 22357899898888865332111 00001
Q ss_pred C---eeEEEeCC--------CCHHHHHHhhcc-----CCceEEEEEcCCCCCcccc----CHHHHHHHHHhcCCEEEEeC
Q 013210 164 N---ITTTFVDI--------SDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDN 223 (447)
Q Consensus 164 g---~~~~~v~~--------~d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~ 223 (447)
+ ..+.+++. +|++++++.+++ +++.+|++|.+.+..|.+. .+++|.++|++||+++|+||
T Consensus 160 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE 239 (425)
T PRK09264 160 GVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDD 239 (425)
T ss_pred CCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEec
Confidence 1 12444444 367788887732 3578999999999888765 38999999999999999999
Q ss_pred CCCCCCC-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC
Q 013210 224 TFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI 296 (447)
Q Consensus 224 ~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~ 296 (447)
+|+++.. .......|++ +++|.+++.|.++ |+++.++++ ..+..... ..+..++.++..++...+..+
T Consensus 240 V~tG~GrtG~~~~~~~~~v~PDi~--t~~K~l~~~G~pi-gav~~~~~i-~~~~~~~~-~~T~~gnp~~~aaa~a~l~~~ 314 (425)
T PRK09264 240 IQAGCGRTGTFFSFERAGITPDIV--TLSKSISGYGLPM-ALVLIKPEL-DVWKPGEH-NGTFRGNNLAFVTATAALEEY 314 (425)
T ss_pred hhhCCccccHHHHHhhcCCCCCEE--EeccccCCCccce-EEEEEchhh-hccCCCcc-CCCCCCCHHHHHHHHHHHHHH
Confidence 9965521 1122345665 5789999768888 888887776 33322111 122334443433333333211
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 297 PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
-.-....++.+++.+++.+.|++...+ +|.... +..|.|.++++.+++.+....+...+..
T Consensus 315 ~~~~~l~~~~~~~g~~l~~~l~~l~~~--~~~~~~------------~vrg~Gl~~~i~l~~~~~~~~l~~~~~~ 375 (425)
T PRK09264 315 WSDDAFEKEVKAKGELVRERLEEIAAK--YPGLGA------------EVRGRGMMQGIDFGDGELAGKIAAEAFE 375 (425)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHh--CCCcee------------cceecccEEEEEecChHHHHHHHHHHHH
Confidence 111124455666777777777653111 111000 1125788999999866556677777765
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=156.36 Aligned_cols=300 Identities=17% Similarity=0.137 Sum_probs=184.8
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH-HHhhcCcccCeeEEEeCC---
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVDI--- 172 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~-~~~~~~~~~g~~~~~v~~--- 172 (447)
++++..++|+.+++++|.+.+++|+||+.|++++....+++||.| +.+.|..+... +. ..|..+.-++.
T Consensus 69 g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe-----~~Gav~vDi~~dea 141 (450)
T TIGR02618 69 GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQE-----KNGATFVDIIIDEA 141 (450)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHH-----hCCeEEEeeecccc
Confidence 567889999999999999999999999999888766668999976 55666444433 31 14543333311
Q ss_pred ------------CCHHHHHHhhccC---CceEEEEEcCCCCC-cccc---CHHHHHHHHHhcCCEEEEeCCC-C-C--CC
Q 013210 173 ------------SDHEMVNSAIVQG---RTKVLYFESISNPT-LAVA---NIPELSRLAHDKGVTVVVDNTF-S-P--LV 229 (447)
Q Consensus 173 ------------~d~~~l~~~i~~~---~t~lV~i~~~~Npt-G~v~---~l~~I~~la~~~gi~livD~~~-~-~--~~ 229 (447)
.|+++|+++|... ++++|.+++++|-. |.+. ++++|.++|++||+.+|.|.++ . . +.
T Consensus 142 ~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I 221 (450)
T TIGR02618 142 HDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFI 221 (450)
T ss_pred cccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhh
Confidence 1899999999321 45688888888865 7884 5789999999999999999997 2 1 11
Q ss_pred ------C---Ccc----C--CCCeEEEeCCCccccCCCCeeEEEEE-cChHHHHHHHHHhh--hhhhhcCCCccHHHHHH
Q 013210 230 ------L---SPA----R--LGADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQ--GALMLLGPTMNPKVAFE 291 (447)
Q Consensus 230 ------~---~~~----~--~g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~ 291 (447)
+ ++. + -.+|.++.|++|..+.+ +||+++ .+++++++++..+. ++....| .++.....+
T Consensus 222 ~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~---~GG~l~~~d~~l~~k~r~~~~~~eG~~tyG-gla~r~~~a 297 (450)
T TIGR02618 222 KEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVN---IGGFLCMNDDEMFQSAKELVVVFEGMPSYG-GLAGRDMEA 297 (450)
T ss_pred hcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCC---CceEEEeCCHHHHHHHHHHhhhcCCccccC-chhhhhHHH
Confidence 1 110 1 15899999999999976 579887 78889988887643 1111122 222222111
Q ss_pred HHccCCc-HH-HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--------HHH
Q 013210 292 LSERIPH-LG-LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--------EEK 361 (447)
Q Consensus 292 ~~~~~~~-l~-~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--------~~~ 361 (447)
+..++.+ +. ...++...+.++|.+.|.+.|..+..|. .|..+.++... .--
T Consensus 298 la~gL~e~~~~~y~~~r~~~a~~La~~L~~~Gvpv~~p~-------------------ggh~V~vda~~~lph~~~~~~p 358 (450)
T TIGR02618 298 MAIGIREAVDYEYIEHRVKQVRYLGDKLKAAGVPIVEPV-------------------GGHAVFLDARRFLPHIPQDQFP 358 (450)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHCCCcccCCC-------------------CcceEEEEhHHhCCCCChhhCh
Confidence 1122222 11 2233345568899999999888775553 34456565421 112
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..+...|-. .-|+-++-.|+.-.- .-|. ++ +.. .-.-.++|+.+-.+-=+.+.++-+.+++..+
T Consensus 359 ~~al~~~ly~--~~gir~~e~g~~~~~-~~~~--~~-----~~~---~~~~el~rlaiprr~yt~~h~~~v~~~~~~~ 423 (450)
T TIGR02618 359 AQSLAASIYV--ETGVRSMERGIVSAG-RNNV--TG-----EHH---RPKLELVRLTIPRRVYTYAHMDVVADGIIKL 423 (450)
T ss_pred HHHHHHHHHH--HhCccEEeecceecc-cCCC--CC-----ccc---CCccceeeeccccccccHhHHHHHHHHHHHH
Confidence 4566666654 235556666632100 0011 10 000 0012679999982233455555555555554
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-17 Score=163.90 Aligned_cols=298 Identities=13% Similarity=0.132 Sum_probs=179.9
Q ss_pred CCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhc----CcccC-
Q 013210 95 RHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF----PRACN- 164 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~----~~~~g- 164 (447)
...++...++.++|+++.+. +.++|++||+||+..|++... ....+|+.....||+......... ....+
T Consensus 79 ~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~ 158 (425)
T PRK07495 79 VVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGF 158 (425)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCC
Confidence 34566667788888888752 579999999999999998542 224579999999988643221110 00011
Q ss_pred ----eeEEEeCCCC----------HHHHHHhhc----cCCceEEEEEcCCCCCcccc-C---HHHHHHHHHhcCCEEEEe
Q 013210 165 ----ITTTFVDISD----------HEMVNSAIV----QGRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 165 ----~~~~~v~~~d----------~~~l~~~i~----~~~t~lV~i~~~~NptG~v~-~---l~~I~~la~~~gi~livD 222 (447)
..+.+++..+ ++++++.++ .+++++|++|.+...+|.+. | +++|.++|++||+++|+|
T Consensus 159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~D 238 (425)
T PRK07495 159 GAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIAD 238 (425)
T ss_pred CCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 1233344322 455666652 24689999999888788654 3 889999999999999999
Q ss_pred CCCCCCCCC-----ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC
Q 013210 223 NTFSPLVLS-----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 297 (447)
Q Consensus 223 ~~~~~~~~~-----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~ 297 (447)
|+|+++... ....++...+.+++|.++ .|.++ |++++++++++.+..... ..+..++.+...++.+.+..++
T Consensus 239 Ev~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~~pl~~aaa~a~l~~l~ 315 (425)
T PRK07495 239 EVQTGFARTGKLFAMEHHEVAADLTTMAKGLA-GGFPL-AAVTGRAEIMDAPGPGGL-GGTYGGNPLGIAAAHAVLDVIE 315 (425)
T ss_pred chhhcCCcCCCceeecccCCCCCEEeehhhhc-CCccc-eEEEEcHHHHhccCCCCc-CCCCCCCHHHHHHHHHHHHHHH
Confidence 999655322 122345455667999999 57888 889999998877653222 2223444444443334433332
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-------HHHHHHHHHhh
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-------EKANRLMNYLQ 370 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-------~~~~~l~~~l~ 370 (447)
. ....++.+++.++|.+.|++...+ +|... +..|.|.++++++... ..+..+...+.
T Consensus 316 ~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~i~-------------~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~ 379 (425)
T PRK07495 316 E-EDLCERANQLGNRLKQRLASLRET--VPEIA-------------DIRGPGFMNAVEFNDADSGLPSAEFANRVRLKAL 379 (425)
T ss_pred h-chHHHHHHHHHHHHHHHHHHHHhh--CCCee-------------eeecCceEEEEEEecCCCCCccHHHHHHHHHHHH
Confidence 1 123455566667777777653111 11110 1226788999999531 12345555555
Q ss_pred cccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---CCCHHHHHHHHHHHHHHhh
Q 013210 371 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---LGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 371 ~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~---~~~~~~~i~~l~~al~~~~ 440 (447)
. .|++....| ...+.|||...+ .+++++.++.|.++|++++
T Consensus 380 ~---~Gvl~~~~g--------------------------~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 380 E---KGLILLTCG--------------------------VHGNVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred H---CCeEEeecC--------------------------CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 4 233211111 113568888661 3556666677777776654
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=161.56 Aligned_cols=255 Identities=13% Similarity=0.173 Sum_probs=156.5
Q ss_pred CCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc-CC-CCeEEEeCCCchhHHHHHHhhcC------ccc-
Q 013210 96 HFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLC-SS-GGHVVAARTLYGGTHALLTHFFP------RAC- 163 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~-~~-gd~Vi~~~~~y~~~~~~~~~~~~------~~~- 163 (447)
..++...++.++|+++... +.++|++||+||+..|++... -. ..+|+.....||+........-. ...
T Consensus 82 ~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~ 161 (445)
T PRK08593 82 MYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYG 161 (445)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCC
Confidence 3467778899999998742 479999999999999998542 12 35788888888886532211100 000
Q ss_pred --CeeEEEeCCCC-----------------HHHHHHhhc----cCCceEEEEEcCCCCCccccC----HHHHHHHHHhcC
Q 013210 164 --NITTTFVDISD-----------------HEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKG 216 (447)
Q Consensus 164 --g~~~~~v~~~d-----------------~~~l~~~i~----~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~g 216 (447)
...+.+++..+ ++++++.+. .+++.+|++|.+.+..|.+.| +++|.++|++||
T Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g 241 (445)
T PRK08593 162 PLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHG 241 (445)
T ss_pred CCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 01123333211 134444442 257899999999999998876 999999999999
Q ss_pred CEEEEeCCCCCCCCC-----ccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHH
Q 013210 217 VTVVVDNTFSPLVLS-----PARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 289 (447)
Q Consensus 217 i~livD~~~~~~~~~-----~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a 289 (447)
+++|+||+++++... ...++ .|++ +++|.+++ |.++ |++++++++++.+..... ..+..+++....++
T Consensus 242 ~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~--t~gK~l~~-G~p~-gav~~~~~i~~~~~~~~~-~~T~~~~pl~~aaa 316 (445)
T PRK08593 242 ILFAVDDIQQGLGRTGKWSSISHFNITPDLM--SFGKSLAG-GMPM-SAIVGRKEIMESLEAPAH-LFTTGANPVSCAAA 316 (445)
T ss_pred CEEEEechhhCCCcCchHHHHHhcCCCCCEe--eecccccC-Cccc-EEEEEcHHHHhhhccCCC-CCCCCCCHHHHHHH
Confidence 999999999655321 11223 4555 58999984 6777 888999999887753222 22233444443334
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--------HHH
Q 013210 290 FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--------EEK 361 (447)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--------~~~ 361 (447)
...+..++. ....++..++.++|.+.|+++..+. |... +..|.|.++.+++.. ...
T Consensus 317 ~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~--~~v~-------------~vrG~Gl~~gi~l~~~~~~~~~~~~~ 380 (445)
T PRK08593 317 LATIDMIED-ESLLQRSAEKGEYARKRFDQWVSKY--NFVG-------------DVRGYGLSIGIDIVSDKKLKTRDNEA 380 (445)
T ss_pred HHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcC--CcEE-------------EEeccceEEEEEEecCCCcCCCcHHH
Confidence 444433322 1244556666667777776531111 1000 123678898888852 123
Q ss_pred HHHHHHHhhc
Q 013210 362 ANRLMNYLQN 371 (447)
Q Consensus 362 ~~~l~~~l~~ 371 (447)
+..+...+..
T Consensus 381 ~~~~~~~~~~ 390 (445)
T PRK08593 381 ALKICNYCFE 390 (445)
T ss_pred HHHHHHHHHH
Confidence 4556666654
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-17 Score=166.36 Aligned_cols=241 Identities=13% Similarity=0.154 Sum_probs=150.2
Q ss_pred CCchHHHHHHHHHHHhC-C--CeEEEeCChHHHHHHHHHHhc------C-CC-CeEEEeCCCchhHHHHHHhhcC-----
Q 013210 97 FNPTVLNLSRQMAALEG-T--EAAYCTASGMSAISSVLMQLC------S-SG-GHVVAARTLYGGTHALLTHFFP----- 160 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g-~--~~~~~tsggt~A~~~al~~l~------~-~g-d~Vi~~~~~y~~~~~~~~~~~~----- 160 (447)
.++...++.++|.+++. . +.++|++||++|+..|++... . ++ ++||.....||+........-.
T Consensus 131 ~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~ 210 (504)
T PLN02760 131 TTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALH 210 (504)
T ss_pred CcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhc
Confidence 45556788888888753 3 469999999999999998653 1 22 5788888888876422211000
Q ss_pred cccCe---eEEEeCCC----------C--------HHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHHH
Q 013210 161 RACNI---TTTFVDIS----------D--------HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLA 212 (447)
Q Consensus 161 ~~~g~---~~~~v~~~----------d--------~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~la 212 (447)
...+. .+..++.. + .++|++.+. .+++.+|++|.+....|.+.| +++|.++|
T Consensus 211 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc 290 (504)
T PLN02760 211 QKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVL 290 (504)
T ss_pred cCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHH
Confidence 00110 12222211 1 234666552 246889999999999999987 99999999
Q ss_pred HhcCCEEEEeCCCCCCCC-----CccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh------hhhhhh
Q 013210 213 HDKGVTVVVDNTFSPLVL-----SPARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------QGALML 279 (447)
Q Consensus 213 ~~~gi~livD~~~~~~~~-----~~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------~~~~~~ 279 (447)
++||+++|+||+++++.. ....+| .|+++ ++|.+|+...++ |++++++++++.+.... ....+.
T Consensus 291 ~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~lggG~~Pi-gAv~~~~~i~d~~~~~~~~~~~~~h~~T~ 367 (504)
T PLN02760 291 KKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVS--LAKALSSAYMPI-GAVLVSPEISDVIHSQSNKLGSFAHGFTY 367 (504)
T ss_pred HHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEE--ecccccCCcccc-ceEeecHHHHhhhhcccccccCcccCCCC
Confidence 999999999999966621 111223 56544 899998543467 66888889888775310 112234
Q ss_pred cCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 280 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 280 ~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
.|++++..++.+.+..++. ....++.+++.++|.+.|++. .+ +|-.. +..|.|.++.+++.
T Consensus 368 ~gnPl~~Aaala~Le~i~~-~~l~~~~~~~g~~l~~~L~~l-~~--~~~v~-------------~vrG~Gl~~gie~~ 428 (504)
T PLN02760 368 SGHPVSCAVALEALKIYKE-RNIPEHVNKIAPRFQDGIKAF-SG--SPIIG-------------EIRGTGLILGTEFV 428 (504)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHH-hc--CCCee-------------eEEeCceEEEEEEe
Confidence 4444444444444433322 124566677777888877764 11 11111 22378899999985
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=161.71 Aligned_cols=293 Identities=15% Similarity=0.148 Sum_probs=178.0
Q ss_pred CCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcC----cccCe-
Q 013210 96 HFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP----RACNI- 165 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~----~~~g~- 165 (447)
..++...++.++|+++.+. +.++|++||++|+..|++... ...++|+.....||+.......... ...+.
T Consensus 96 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~ 175 (443)
T PRK06058 96 TPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFG 175 (443)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccC
Confidence 3456667788888888642 579999999999999998432 2246899999999987644321100 00010
Q ss_pred ----eEEEeC----CCC---------------HHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCE
Q 013210 166 ----TTTFVD----ISD---------------HEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVT 218 (447)
Q Consensus 166 ----~~~~v~----~~d---------------~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~ 218 (447)
.+..++ ..+ ++.+++.+..+++++|++|.++...|.+.| +++|.++|++||++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gil 255 (443)
T PRK06058 176 PFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVV 255 (443)
T ss_pred CCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 112121 111 223344442367899999998888887764 89999999999999
Q ss_pred EEEeCCCCCCCCCc-----c--CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHH
Q 013210 219 VVVDNTFSPLVLSP-----A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 291 (447)
Q Consensus 219 livD~~~~~~~~~~-----~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~ 291 (447)
+|+||+++++.... . ....|+++ ++|.++ .|.++ |++++++++++.+..... ..+..|++++..++.+
T Consensus 256 lI~DEV~tGfgRtG~~fa~~~~gv~PDiv~--~gK~l~-~G~Pi-~av~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~a 330 (443)
T PRK06058 256 FIADEVQTGFARTGAWFACEHEGIVPDLIT--TAKGIA-GGLPL-SAVTGRAEIMDAPHPGGL-GGTYGGNPVACAAALA 330 (443)
T ss_pred EEEeccccCCCcChhhhHHHhcCCCCCEEE--Eccccc-CCCcc-EEEEEcHHHHhhccCCCC-CCCCCCCHHHHHHHHH
Confidence 99999997663211 1 22357766 689999 57888 888889898877754322 2334555555555555
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------HHHHHH
Q 013210 292 LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------EEKANR 364 (447)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------~~~~~~ 364 (447)
.+..++. ....++..++.++|.+.|++...+. |... +..|.|.++.+++.. .+.+..
T Consensus 331 ~L~~~~~-~~l~~~~~~~g~~l~~~L~~l~~~~--~~i~-------------~vrg~G~~~~i~~~~~~~~~~~~~~~~~ 394 (443)
T PRK06058 331 AIETIEE-DDLVARARQIEALMTDRLRALAAED--DRIG-------------DVRGRGAMIAIELVKPGTTEPDAELTKA 394 (443)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhhC--CcEE-------------eeeccceEEEEEEecCCCCCCcHHHHHH
Confidence 4443321 1234556666777777776542110 1000 122688899999842 123455
Q ss_pred HHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 365 l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+...+.. .|+ .+..+ +...+.|||.+. ...+++.++.+.++|++.
T Consensus 395 l~~~~~~---~Gv-~~~~~-------------------------~~~~~~lr~~Pp-l~~t~~~i~~~~~~l~~~ 439 (443)
T PRK06058 395 LAAAAHA---AGV-IVLTC-------------------------GTYGNVIRLLPP-LVIGDELLREGLDVLEAA 439 (443)
T ss_pred HHHHHHH---CCe-EEecc-------------------------CCCCCEEEEECC-CccCHHHHHHHHHHHHHH
Confidence 6666654 332 22211 011257999877 656666666665555543
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-17 Score=158.81 Aligned_cols=163 Identities=19% Similarity=0.212 Sum_probs=123.1
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-CCC-CeEEEeCCCchhHHHHHHh----------hcCccc
Q 013210 96 HFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC-SSG-GHVVAARTLYGGTHALLTH----------FFPRAC 163 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~-~~g-d~Vi~~~~~y~~~~~~~~~----------~~~~~~ 163 (447)
+.++...++.++++++.+.+.++|++||++|+.++++... .+| ++||+....||+....... +.+.
T Consensus 63 ~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~-- 140 (364)
T PRK04013 63 FEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPL-- 140 (364)
T ss_pred cCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCC--
Confidence 4567778899999999888899999999999999998653 345 7899999999887533311 0111
Q ss_pred CeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc-C---HHHHHHHHHhcCCEEEEeCCCCCCCCC----c--c
Q 013210 164 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLVLS----P--A 233 (447)
Q Consensus 164 g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~-~---l~~I~~la~~~gi~livD~~~~~~~~~----~--~ 233 (447)
-..+.+++.+|++++++.+ .+++++|++|+++...|.+. | +++|.++|++||+++|+||+++++... . .
T Consensus 141 ~~~~~~~~~~d~~~l~~~i-~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~ 219 (364)
T PRK04013 141 VPGFKHIPFNDVEAAKEAI-TKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHY 219 (364)
T ss_pred CCCcEEecCCCHHHHHHHh-cCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhc
Confidence 1234556667899999999 67899999999998888765 4 899999999999999999999655221 1 1
Q ss_pred CCCCeEEEeCCCccccCCCCeeEEEEEcChHH
Q 013210 234 RLGADVVVHSISKFISGGADIIAGAVCGPANL 265 (447)
Q Consensus 234 ~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~ 265 (447)
....|+++ ++|.+|+ |.++ |+++.+.++
T Consensus 220 gv~PDiv~--~gK~lgg-G~P~-~a~~~~~~~ 247 (364)
T PRK04013 220 KVEPDIVT--MGKGIGN-GVPV-SLTLTNFDV 247 (364)
T ss_pred CCCCCEEE--ecccccC-Ccee-EEEEecccc
Confidence 22456666 7999996 6788 666665554
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=161.45 Aligned_cols=218 Identities=16% Similarity=0.072 Sum_probs=146.7
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhc--------CcccCe-
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF--------PRACNI- 165 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~--------~~~~g~- 165 (447)
.++...++.++|.++.+.+.+.|++||+||+..|++... ...++|+.....||+......... +...|.
T Consensus 113 ~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~ 192 (453)
T PRK07046 113 PSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQV 192 (453)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCC
Confidence 355567788888888888899999999999999998643 224689999999999753321110 000111
Q ss_pred -----eEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCC---CCCCCcc
Q 013210 166 -----TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFS---PLVLSPA 233 (447)
Q Consensus 166 -----~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~---~~~~~~~ 233 (447)
.+..++.+|++++++.+..+++.+|++|.+....|.+.| +++|.++|++||+++|+||+++ ++.....
T Consensus 193 ~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~ 272 (453)
T PRK07046 193 HDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTR 272 (453)
T ss_pred ccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhH
Confidence 234556679999999885567899999999988888876 8999999999999999999985 2221111
Q ss_pred --CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--------hhhhhcCCCccHHHHHHHHccCCcHHHHH
Q 013210 234 --RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--------GALMLLGPTMNPKVAFELSERIPHLGLRM 303 (447)
Q Consensus 234 --~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--------~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 303 (447)
....|+++ ++|.+|+ |.++ |++++++++++.+..... ...+..|++++..++.+.+..++. ....
T Consensus 273 ~~gv~PDi~t--~gK~lgg-G~Pi-~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~-~~~~ 347 (453)
T PRK07046 273 AHGLEPDFLV--VGKPIAG-GVPC-AVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMT-EAAY 347 (453)
T ss_pred HhCCCcccee--ehhhhcC-CCcc-eeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhc-ccHH
Confidence 22356665 8999995 6777 888899999887753210 112234444444444444443322 1234
Q ss_pred HHHHHHHHHHHHHHHh
Q 013210 304 KEHCHRALIFARRMKK 319 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~ 319 (447)
++..+..++|.+.|++
T Consensus 348 ~~~~~~g~~l~~~L~~ 363 (453)
T PRK07046 348 AHMLALAARLAAGLRA 363 (453)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666666654
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=159.95 Aligned_cols=287 Identities=15% Similarity=0.190 Sum_probs=178.2
Q ss_pred CCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhc-----------
Q 013210 96 HFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF----------- 159 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~----------- 159 (447)
..++...++.++|+++.+ .+.++|++||+||+..|++... ...++|+.....||+.........
T Consensus 94 ~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~ 173 (441)
T PRK05769 94 FYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFF 173 (441)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCC
Confidence 346667788888888874 3689999999999999997542 223578888888888764331110
Q ss_pred CcccCeeEEEeCCC----------C--------HHHHHH-hhc----cCCceEEEEEcCCCCCccccC----HHHHHHHH
Q 013210 160 PRACNITTTFVDIS----------D--------HEMVNS-AIV----QGRTKVLYFESISNPTLAVAN----IPELSRLA 212 (447)
Q Consensus 160 ~~~~g~~~~~v~~~----------d--------~~~l~~-~i~----~~~t~lV~i~~~~NptG~v~~----l~~I~~la 212 (447)
+...| +..++.. + ++.+++ .++ .+++.+|++|.++...|.+.| +++|.++|
T Consensus 174 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~ 251 (441)
T PRK05769 174 PLMPG--VIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLA 251 (441)
T ss_pred CCCCC--eEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHH
Confidence 11012 2223221 1 233555 221 256889999999999999988 99999999
Q ss_pred HhcCCEEEEeCCCCCCCCC-----ccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCcc
Q 013210 213 HDKGVTVVVDNTFSPLVLS-----PARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN 285 (447)
Q Consensus 213 ~~~gi~livD~~~~~~~~~-----~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~ 285 (447)
++||+++|+||+++++... ...++ .|+++ ++|.++ .|.++ |++++++++.+.+... ...+..|++++
T Consensus 252 ~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~-~G~p~-gav~~~~~i~~~~~~~--~~~T~~g~p~~ 325 (441)
T PRK05769 252 DKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIA-GGLPL-GAVIGRAELMFLPPGS--HANTFGGNPVA 325 (441)
T ss_pred HHcCCEEEEechhhCCCcccceehhhccCCCCCEEE--Eccccc-CCccc-EEEEEehhhhhcCCCC--CCCCCCcCHHH
Confidence 9999999999999655321 11223 57765 789999 46777 7888888876433211 12223444444
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------
Q 013210 286 PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------ 359 (447)
Q Consensus 286 ~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------ 359 (447)
..++...+..++. ...++..++.++|.+.|++...+...+. +..|.|.++.+++...
T Consensus 326 ~aaa~a~L~~l~~--~~~~~~~~~g~~l~~~L~~l~~~~~~~~---------------~vrg~G~~~~i~~~~~~~~~~~ 388 (441)
T PRK05769 326 AAAALATLEELEE--GLLENAQKLGEYLRKELKELKEKYEFIG---------------DVRGLGLMIGVELVKDRKEPDP 388 (441)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCee---------------eeecceEEEEEEeccCCccccH
Confidence 4444444444333 4556677777888888865421111111 1226788999998532
Q ss_pred HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 360 ~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+....+.+.+.. .|++.... ....+||++. ...+++.|+.+.++|++.
T Consensus 389 ~~~~~~~~~~~~---~Gil~~~~----------------------------~~~~lr~~p~-l~~t~~~id~~~~~l~~~ 436 (441)
T PRK05769 389 KLRDKVLYEAFK---RGLLLLGA----------------------------GKSAIRIIPP-LIITEEEADIGLEILEEA 436 (441)
T ss_pred HHHHHHHHHHHh---CCcEEecC----------------------------CCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 234455555554 23221110 1256899988 766666666666666544
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-17 Score=164.47 Aligned_cols=253 Identities=16% Similarity=0.184 Sum_probs=161.3
Q ss_pred CCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhh--------c-CcccC
Q 013210 97 FNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF--------F-PRACN 164 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~--------~-~~~~g 164 (447)
.++...++.++|+++. +.+.++||+||++|+..+++.... .+++||...+.||+....+... . +...+
T Consensus 88 ~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~ 167 (426)
T PRK00062 88 PTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPG 167 (426)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCC
Confidence 3556678888888876 467899999999999999987543 3578999999999975332111 0 00001
Q ss_pred e------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013210 165 I------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 165 ~------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~ 232 (447)
. ....++..|++++++.+++ +++++|++|.+.+.+|.+.+ +++|.++|++||+++|+||+|+++....
T Consensus 168 ~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~ 247 (426)
T PRK00062 168 VPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL 247 (426)
T ss_pred CCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC
Confidence 1 1233455689999888732 47889999999888999988 9999999999999999999996553211
Q ss_pred ----cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHHHHH
Q 013210 233 ----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEH 306 (447)
Q Consensus 233 ----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~ 306 (447)
..++++..+.+++|.++ .|+++ |++++++++++.+..... ...+..++.+...++...+..++.- ...++.
T Consensus 248 ~~~~~~~~~~pDi~~~gK~l~-~G~p~-ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~-~~~~~~ 324 (426)
T PRK00062 248 GGAQGYYGVTPDLTTLGKIIG-GGLPV-GAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEP-GFYEEL 324 (426)
T ss_pred ccHHHHhCCCcchHhhhhHhh-CCCcc-eeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcc-hHHHHH
Confidence 11233222467999999 56777 778888888887752211 1112234444444444444333221 234445
Q ss_pred HHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------------HHHHHHHHHHh
Q 013210 307 CHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKANRLMNYL 369 (447)
Q Consensus 307 ~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------------~~~~~~l~~~l 369 (447)
.+..+++.+.|++ ++..... .|.|.++.+.+.. ...+..+...|
T Consensus 325 ~~~~~~~~~~l~~~~~~~~~~~~v-------------------rg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l 385 (426)
T PRK00062 325 EALTKRLAEGLKEAAKKAGIPLTV-------------------NRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAM 385 (426)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEE-------------------EEecceEEEEEecCCCcchhhhccccHHHHHHHHHHH
Confidence 5555555555543 3432111 1467899988852 12245677776
Q ss_pred hc
Q 013210 370 QN 371 (447)
Q Consensus 370 ~~ 371 (447)
..
T Consensus 386 ~~ 387 (426)
T PRK00062 386 LD 387 (426)
T ss_pred HH
Confidence 65
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-16 Score=147.04 Aligned_cols=254 Identities=21% Similarity=0.279 Sum_probs=163.3
Q ss_pred CchHHHHHHHHHHHhCCCeEEEe---CChHHHHHHHHHHhcCCCCeEEE-eCCCchhHHHHHH------hhcCcccCeeE
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCT---ASGMSAISSVLMQLCSSGGHVVA-ARTLYGGTHALLT------HFFPRACNITT 167 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~t---sggt~A~~~al~~l~~~gd~Vi~-~~~~y~~~~~~~~------~~~~~~~g~~~ 167 (447)
+.-++.+++..|+.+|+|++++- -|||.|+..+|.++++|||+++. +..-|......+- .-+.. .|+.+
T Consensus 53 D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e-~Gi~Y 131 (403)
T PF06838_consen 53 DIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKE-FGIKY 131 (403)
T ss_dssp -HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGG-GT-EE
T ss_pred CccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHH-hCcee
Confidence 45668899999999999998875 59999999999999999999886 4455766665551 11122 58888
Q ss_pred EEeCCC-----CHHHHHHhhccCCceEEEEEc----CCCCCccccCHHHHHHHHHh--cCCEEEEeCCCCCCC--CCccC
Q 013210 168 TFVDIS-----DHEMVNSAIVQGRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLV--LSPAR 234 (447)
Q Consensus 168 ~~v~~~-----d~~~l~~~i~~~~t~lV~i~~----~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~--~~~~~ 234 (447)
..++.. |.+.+++++ +++|++|++.- ..-|.-.+.+++++.+++|+ .+++++||++|+.|. ..|.+
T Consensus 132 ~~v~L~~dg~~D~~~i~~~~-~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~ 210 (403)
T PF06838_consen 132 REVPLTEDGTIDWEAIKKAL-KPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTE 210 (403)
T ss_dssp EE--B-TTSSB-HHHHHHHH-HTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGG
T ss_pred EEEeecCCCCcCHHHHHHhh-ccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCccc
Confidence 888764 899999999 78999999972 34455566677888888876 479999999999886 46888
Q ss_pred CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHH--hhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013210 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL--HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALI 312 (447)
Q Consensus 235 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~--~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~ 312 (447)
.|+|++.+|+-|..|+.-...|||+++++++++..... ..+.+.-.|.++... ....+++---+..+.+-.+-+..
T Consensus 211 vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~~--R~~~QGlFlAP~vV~eAlKgaif 288 (403)
T PF06838_consen 211 VGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGTN--RLMFQGLFLAPHVVGEALKGAIF 288 (403)
T ss_dssp GT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTTH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCccccccccCcchH--HHHHhHHhhchHHHHHHHHHHHH
Confidence 89999999999999987777899999999999877543 222222344443322 11222322223344444555666
Q ss_pred HHHHHHhCCCeeeCCC-CCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 313 FARRMKKLGLKVLYPG-LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~-~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
.+..++++|+++.... .+++. -+-++.|.+.+...+|++..+.
T Consensus 289 ~A~~fe~lG~~v~P~~~~~R~D----------------iIQai~l~~~e~l~~FC~~iQ~ 332 (403)
T PF06838_consen 289 AAALFEKLGFEVSPKPDDPRSD----------------IIQAIELGSPEKLIAFCQGIQA 332 (403)
T ss_dssp HHHHHHHTT-EEES-TTS--SS----------------S-EEEE-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCCCCCCCCCCc----------------eEEEEECCCHHHHHHHHHHHHh
Confidence 6677788898765321 12222 2888999999999999999885
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-16 Score=157.63 Aligned_cols=252 Identities=12% Similarity=0.178 Sum_probs=153.4
Q ss_pred CCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCc------ccC-
Q 013210 97 FNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR------ACN- 164 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~------~~g- 164 (447)
.++...++.++|+++.+. +.++|++||+||+..|++... ....+||.....||+........... ..+
T Consensus 95 ~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~ 174 (451)
T PRK06918 95 MYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGP 174 (451)
T ss_pred ccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCC
Confidence 456667888889888753 579999999999999998543 22357899999998876443211000 000
Q ss_pred --eeEEEeCCCC-----------------HHHHHHhh----ccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCC
Q 013210 165 --ITTTFVDISD-----------------HEMVNSAI----VQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV 217 (447)
Q Consensus 165 --~~~~~v~~~d-----------------~~~l~~~i----~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi 217 (447)
..+..++..+ ++.+++.+ ..+++.+|++|.++...|.+.+ +++|.++|++||+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gi 254 (451)
T PRK06918 175 FAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGI 254 (451)
T ss_pred CCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 1122222110 12333333 1257889999999888887654 8899999999999
Q ss_pred EEEEeCCCCCCCCCc-----cCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHH
Q 013210 218 TVVVDNTFSPLVLSP-----ARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF 290 (447)
Q Consensus 218 ~livD~~~~~~~~~~-----~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~ 290 (447)
++|+||+|+++.... ..++ .| +.|++|.++ +|.++ |++++++++++.+..... ..+..++.+.+.++.
T Consensus 255 llI~DEV~tg~gr~g~~~a~~~~~v~pD--i~t~sK~l~-~G~pi-g~v~~~~~i~~~~~~~~~-~~T~~g~~l~~aaa~ 329 (451)
T PRK06918 255 LFVADEIQTGFARTGKYFAIEHFDVVPD--LITVSKSLG-AGVPI-SGVIGRKEIMDESAPGEL-GGTYAGSPLGCAAAL 329 (451)
T ss_pred EEEEeccccCcCccCceehhHhcCCCCC--EEeeehhhc-CCCcc-EEEEEcHHHHhccCCCCc-CcCCCcCHHHHHHHH
Confidence 999999997663321 2234 55 457999999 68999 999999998877753322 223445555555544
Q ss_pred HHHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------CHH
Q 013210 291 ELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEE 360 (447)
Q Consensus 291 ~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~~~ 360 (447)
..+..+ ..+. ++..+..+++.+.|++...+ +|... ...|.|+++.+.+. +..
T Consensus 330 a~l~~i~~~~~~---~~~~~~g~~l~~~l~~l~~~--~~~~~-------------~vrg~G~~~~~~~~~~~~~~~~~~~ 391 (451)
T PRK06918 330 AVLDIIEKENLN---DRAIELGKVVMNRFEEMKNK--YNCIG-------------DVRGLGAMCAFELVQDRKTKEPDKT 391 (451)
T ss_pred HHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHhh--CCCce-------------eeccceeEEEEEEccCCCcCCCcHH
Confidence 444322 2232 33444445566666543111 11100 11256778888773 223
Q ss_pred HHHHHHHHhhc
Q 013210 361 KANRLMNYLQN 371 (447)
Q Consensus 361 ~~~~l~~~l~~ 371 (447)
.+..+...+..
T Consensus 392 ~~~~l~~~~~~ 402 (451)
T PRK06918 392 LTANICKEANK 402 (451)
T ss_pred HHHHHHHHHHH
Confidence 35566666664
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=160.64 Aligned_cols=243 Identities=14% Similarity=0.175 Sum_probs=153.2
Q ss_pred CCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc------C-C-CCeEEEeCCCchhHHHHHHhhcC----
Q 013210 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC------S-S-GGHVVAARTLYGGTHALLTHFFP---- 160 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~------~-~-gd~Vi~~~~~y~~~~~~~~~~~~---- 160 (447)
+..++...++.++|+++.. .+.++|++||+||+.+|++... . + ..+|+.....||+........-.
T Consensus 88 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~ 167 (460)
T PRK06105 88 HKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNN 167 (460)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCccc
Confidence 3456767789999999874 3579999999999999998642 1 2 35788888888876532211000
Q ss_pred -cccC---eeEEEeCCC------------------CHHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHH
Q 013210 161 -RACN---ITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRL 211 (447)
Q Consensus 161 -~~~g---~~~~~v~~~------------------d~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~l 211 (447)
+..+ ..+..++.. ..+++++.+. .+++.+|++|.++...|.+.+ +++|.++
T Consensus 168 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~l 247 (460)
T PRK06105 168 HRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAV 247 (460)
T ss_pred ccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHH
Confidence 0011 012222221 1355676662 246899999999999998876 9999999
Q ss_pred HHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh------hhhh
Q 013210 212 AHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ------GALM 278 (447)
Q Consensus 212 a~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~------~~~~ 278 (447)
|++||+++|+||+++++.. .-.....|+++ ++|.+++...++ |++++++++++.+..... ...+
T Consensus 248 c~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~--~gK~lggG~~P~-~av~~~~~i~~~~~~~~~~~~~~~h~~T 324 (460)
T PRK06105 248 LRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILV--MSKQLSSSYQPL-SAVLMNEKVYDPIADESGKIGTFGHGFT 324 (460)
T ss_pred HHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeee--eecccccCcccc-eEEEEcHHHHHHHhcccccCcccccCCC
Confidence 9999999999999966532 11122356665 899999643466 888888888877653210 1122
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
..|++++..++.+.+..++. ....++.++..++|.+.|++. .+ +|... +..|.|.++.+++.
T Consensus 325 ~~gnpl~~aaa~a~L~~i~~-~~l~~~v~~~g~~l~~~L~~l-~~--~~~v~-------------~vrG~Gl~~gie~~ 386 (460)
T PRK06105 325 ASGHPVAAAVALENLAIIEE-RDLVGNAAERGARLQARLRAL-AD--HPLVG-------------EVRGVGLIAAVELV 386 (460)
T ss_pred CCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHh-hc--CCCeE-------------EEEecceEEEEEEe
Confidence 34444444444444433322 134566677777777777765 21 12111 22378889999984
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=160.20 Aligned_cols=242 Identities=14% Similarity=0.124 Sum_probs=144.5
Q ss_pred CCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc-------CCCC-eEEEeCCCchhHHH-HHHhhc-C--cc
Q 013210 97 FNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC-------SSGG-HVVAARTLYGGTHA-LLTHFF-P--RA 162 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~-------~~gd-~Vi~~~~~y~~~~~-~~~~~~-~--~~ 162 (447)
.++...++.++|+++.+ .+.++|++||++|+..|++... ++++ .|+.....||+... .+.... . +.
T Consensus 96 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~ 175 (460)
T PRK12403 96 THPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHE 175 (460)
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccc
Confidence 45667889999999986 4689999999999999998653 1223 35555666776532 221000 0 00
Q ss_pred cC---eeEEEeCCC-----------------CHHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHHHHhc
Q 013210 163 CN---ITTTFVDIS-----------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDK 215 (447)
Q Consensus 163 ~g---~~~~~v~~~-----------------d~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~ 215 (447)
.+ ..+..++.. +.+++++.+. .+++.+|++|.+....|.+.| +++|.++|++|
T Consensus 176 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~ 255 (460)
T PRK12403 176 MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY 255 (460)
T ss_pred cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence 00 012233211 1345655542 246789999999999999887 99999999999
Q ss_pred CCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh---hhhhhcCCCcc
Q 013210 216 GVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ---GALMLLGPTMN 285 (447)
Q Consensus 216 gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~---~~~~~~g~~~~ 285 (447)
|+++|+||+++++.. .-.....|+++ ++|.+++.-..+ |++++++++.+.+..... ...+..|++++
T Consensus 256 g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lggG~~Pi-ga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~ 332 (460)
T PRK12403 256 DVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTSGYVPM-GGLVLSKRIAEALVEQGGVFAHGLTYSGHPVA 332 (460)
T ss_pred CCEEEEeccccCCCcCchhhhhhhcCCCCCeEE--Ecccccccccce-EEEEECHHHHHHHhcCCCccccCCCCCCCHHH
Confidence 999999999966621 11223457776 899999532367 656678888777642111 11123344333
Q ss_pred HHHHHHHHccCCcHHHHHHHHH-HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 286 PKVAFELSERIPHLGLRMKEHC-HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 286 ~~~a~~~~~~~~~l~~~~~~~~-~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
..++.+.++.++.- ...++.. ++.++|.+.|++...+....+ +..|.|.++.++|.
T Consensus 333 ~Aaala~L~~i~~~-~l~~~~~~~~g~~l~~~L~~l~~~~~~i~---------------~vrG~Gl~~gie~~ 389 (460)
T PRK12403 333 AAVAIANLKALRDE-GVVTRVKDDTGPYLQRCLREVFGDHPLVG---------------EVQGAGLVAALQFA 389 (460)
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHhcCCCEE---------------eEeecceEEEEEEc
Confidence 43444444333221 1344553 566667776654311110001 22378899999995
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-16 Score=158.22 Aligned_cols=297 Identities=11% Similarity=0.100 Sum_probs=177.7
Q ss_pred CCCchHHHHHHHHHHHhCC-CeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhh--------
Q 013210 96 HFNPTVLNLSRQMAALEGT-EAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHF-------- 158 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~-~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~-------- 158 (447)
..++...++.++|+++.+. +.++|++||+||+..|++.... +| .+|+.....||+........
T Consensus 86 ~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~ 165 (451)
T PRK07678 86 QSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKY 165 (451)
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCccccc
Confidence 3456667888899888754 4699999999999999986421 23 57999999998865433111
Q ss_pred --cCcccCeeEEEeCCC--------------C---HHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHHH
Q 013210 159 --FPRACNITTTFVDIS--------------D---HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLA 212 (447)
Q Consensus 159 --~~~~~g~~~~~v~~~--------------d---~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~la 212 (447)
.+...| +.+++.. + ++.+++.++ .+++.+|++|.+....|.+.| ++++.++|
T Consensus 166 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc 243 (451)
T PRK07678 166 KYEPLAPG--FLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEIC 243 (451)
T ss_pred ccCCCCCC--CEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHH
Confidence 111012 2222211 1 223555563 357899999999988888875 88999999
Q ss_pred HhcCCEEEEeCCCCCCCCC-----ccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh-----hhhhhhc
Q 013210 213 HDKGVTVVVDNTFSPLVLS-----PARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-----QGALMLL 280 (447)
Q Consensus 213 ~~~gi~livD~~~~~~~~~-----~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-----~~~~~~~ 280 (447)
++||+++|+||+++++... ...+| .|+++ ++|.+|+...++ |++++++++++.+.... ....+..
T Consensus 244 ~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt--~gK~lggG~~Pi-~av~~~~~i~~~~~~~~~~~~~~h~~T~~ 320 (451)
T PRK07678 244 QKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIIT--MAKGITSAYLPL-SATAVKKEIYEAFKGKGEYEHFRHVNTFG 320 (451)
T ss_pred HHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE--eecccccCCcce-eEEEEcHHHHHHHhccCcccccccCCCCC
Confidence 9999999999999666321 11234 57665 899999644578 88888889887775311 1123344
Q ss_pred CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--
Q 013210 281 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-- 358 (447)
Q Consensus 281 g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-- 358 (447)
|++++..++.+.+..++. ....++..+..++|.+.|++.-.+ +|... +..|.|.++.+++..
T Consensus 321 gnp~~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~~~~~--~~~v~-------------~vrg~Gl~~~i~~~~~~ 384 (451)
T PRK07678 321 GNPAACALALKNLEIMEN-ENLIERSAQLGELLLEQLKEELGE--HPLVG-------------DIRGKGLLVGIELVNDK 384 (451)
T ss_pred cCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhc--CCCEE-------------EEEeeceEEEEEEecCC
Confidence 555554444444443321 123445556666666666542111 11000 122678899999841
Q ss_pred -------HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 359 -------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 359 -------~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
...+..+...+.. .|++. ...+ +... ...+.|||++. ...++++|+.
T Consensus 385 ~~~~~~~~~~a~~i~~~l~~---~Gv~~-~~~g-------~~v~--------------~~~~~lrl~Pp-l~it~~eid~ 438 (451)
T PRK07678 385 ETKEPADNDKVASVVAACKE---KGLII-GKNG-------DTVA--------------GYNNVLTLSPP-LVISSEEIAF 438 (451)
T ss_pred cccCcCchHHHHHHHHHHHH---CCcEE-eecC-------cccc--------------CCCCEEEEECC-CcCCHHHHHH
Confidence 2234566666665 23322 1110 1000 01367999888 6555666666
Q ss_pred HHHHHHHh
Q 013210 432 FEKALSRM 439 (447)
Q Consensus 432 l~~al~~~ 439 (447)
+.++|++.
T Consensus 439 ~~~~l~~~ 446 (451)
T PRK07678 439 IVGTLKTA 446 (451)
T ss_pred HHHHHHHH
Confidence 55555543
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-16 Score=158.10 Aligned_cols=244 Identities=14% Similarity=0.215 Sum_probs=148.6
Q ss_pred CCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-C-CCeEEEeCCCchhHHHHHHhhc---------Cc
Q 013210 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-S-GGHVVAARTLYGGTHALLTHFF---------PR 161 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-~-gd~Vi~~~~~y~~~~~~~~~~~---------~~ 161 (447)
...++...++.++|+++.. .+.++|++||+||+..|++.... . ..+||.....||+........- +.
T Consensus 91 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~ 170 (451)
T PRK06062 91 AHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTG 170 (451)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCC
Confidence 3456667888889998864 46899999999999999986432 2 3579999888888754331110 00
Q ss_pred ccCeeEEEeCC---------CC-------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCE
Q 013210 162 ACNITTTFVDI---------SD-------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVT 218 (447)
Q Consensus 162 ~~g~~~~~v~~---------~d-------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~ 218 (447)
..|+.....+. +| ++++++.++. +++.+|++|.+....|.+.| +++|.++|++||++
T Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~l 250 (451)
T PRK06062 171 RAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIV 250 (451)
T ss_pred CCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 01211111110 12 5677777732 46789999999999999987 99999999999999
Q ss_pred EEEeCCCCCCCCC-----ccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh-hhhhhhcCCCccHHHHH
Q 013210 219 VVVDNTFSPLVLS-----PARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGALMLLGPTMNPKVAF 290 (447)
Q Consensus 219 livD~~~~~~~~~-----~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~~~~~g~~~~~~~a~ 290 (447)
+|+||+++++... ...+| .|++ +++|.+|+.-.++ |++++++++++.+.... ....+..|++++..++.
T Consensus 251 LI~DEV~tGfGRtG~~~a~~~~gv~PDi~--t~gK~lggG~~Pi-gav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~ 327 (451)
T PRK06062 251 LIADEVMAGFGRTGKWFAIEHFGVVPDLI--TFAKGVNSGYVPL-GGVAISEAIAATFADRPYPGGLTYSGHPLACAAAV 327 (451)
T ss_pred EEeeccccCCCcCcHHHHHHhcCCCCCee--eechhhhcCCcCc-EEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHH
Confidence 9999999766321 11223 5655 5899999522367 66777778887775321 11223444444444444
Q ss_pred HHHccCCcHHHHHHHHHHHH-HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 291 ELSERIPHLGLRMKEHCHRA-LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~-~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+.+..++.- ...++..+.. ++|.+.|++...+. |... ...|.|.++.+++.
T Consensus 328 a~L~~l~~~-~l~~~~~~~G~~~l~~~L~~l~~~~--~~v~-------------~vrG~Gl~~gve~~ 379 (451)
T PRK06062 328 ATINAMEEE-GIVENAARIGAEVLGPGLRELAERH--PSVG-------------EVRGLGVFWALELV 379 (451)
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhcC--CcEE-------------eEeccccEEEEEEc
Confidence 444333211 1333344443 35555665431111 1000 12267889999985
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-16 Score=159.81 Aligned_cols=219 Identities=15% Similarity=0.159 Sum_probs=145.0
Q ss_pred CCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhh---------cCcccC
Q 013210 97 FNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF---------FPRACN 164 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~---------~~~~~g 164 (447)
.++...++.++|.+.. +.+.+.|++||+||+..|++... ...++|+.....||+....+... .+...|
T Consensus 137 ~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g 216 (474)
T PLN02482 137 PCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPG 216 (474)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCC
Confidence 3444556777777765 45789999999999999998543 22368999999999976432100 010012
Q ss_pred e------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013210 165 I------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 165 ~------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~ 232 (447)
. .+..++.+|++++++.++. +++.+|++|.+.+..|.+.| +++|.++|++||+++|+||+++++....
T Consensus 217 ~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~ 296 (474)
T PLN02482 217 VPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAY 296 (474)
T ss_pred CCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCc
Confidence 1 2344566789999988832 46889999999999998876 6689999999999999999996653221
Q ss_pred ----cCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 233 ----ARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 233 ----~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
..+| .|++ +++|.+|+ |.++ |++++++++++.+..... ...+..+++++..++...+..++. ....+
T Consensus 297 ~ga~~~~gv~PDi~--t~gK~lgg-G~Pi-gav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~-~~~~~ 371 (474)
T PLN02482 297 GGAQEYFGITPDLT--TLGKVIGG-GLPV-GAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ-PGTYE 371 (474)
T ss_pred chHhHHhCCCCCEE--EecchhhC-CCce-EEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhc-cCHHH
Confidence 1123 5664 58999994 6778 666889999887753111 111233444444444444443332 23556
Q ss_pred HHHHHHHHHHHHHHhC
Q 013210 305 EHCHRALIFARRMKKL 320 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~ 320 (447)
+..++.++|.+.|++.
T Consensus 372 ~~~~~g~~l~~~L~~l 387 (474)
T PLN02482 372 YLDKITKKLIQGILEA 387 (474)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777888877664
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-15 Score=149.30 Aligned_cols=222 Identities=14% Similarity=0.131 Sum_probs=155.4
Q ss_pred CCchHHHHHHHHHHHhCCCe----EEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 97 FNPTVLNLSRQMAALEGTEA----AYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~----~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
....-.++-+.+++++|.++ .++|+|||+||..++.+... +...++++...|.++...+. .+|++++.+
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~-----llgi~~~~V 205 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAAR-----MYRMECVKV 205 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHH-----hcCCcceEe
Confidence 33444456666777887632 69999999999999876543 23468889999998887772 367777777
Q ss_pred CCC-----CHHHHHHhhccCC--ceEEEEEcCCCCCccccCHHHHHHHHHhcCC-----EEEEeCCCCCCCC----Cc--
Q 013210 171 DIS-----DHEMVNSAIVQGR--TKVLYFESISNPTLAVANIPELSRLAHDKGV-----TVVVDNTFSPLVL----SP-- 232 (447)
Q Consensus 171 ~~~-----d~~~l~~~i~~~~--t~lV~i~~~~NptG~v~~l~~I~~la~~~gi-----~livD~~~~~~~~----~~-- 232 (447)
+.+ |+++|+++|.++. +.+|+....+.++|.+-|+++|+++|+++|+ ++|||++|+++.. ..
T Consensus 206 p~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~ 285 (470)
T PLN02263 206 DTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPK 285 (470)
T ss_pred ccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccc
Confidence 765 8999999884332 4566677888999999999999999999997 9999999955432 11
Q ss_pred cC--CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH----HhhhhhhhcCCCc--cHHHHHHHHcc--CCcHHHH
Q 013210 233 AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD----LHQGALMLLGPTM--NPKVAFELSER--IPHLGLR 302 (447)
Q Consensus 233 ~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~----~~~~~~~~~g~~~--~~~~a~~~~~~--~~~l~~~ 302 (447)
.+ .++|-++.+.||+++.|-. . |+++.++...+.+.. +........|+.. .....|..++. .+.+.++
T Consensus 286 ~df~~~vDSIsvD~HK~l~~P~~-c-gvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~ 363 (470)
T PLN02263 286 VTFKKPIGSVSVSGHKFVGCPMP-C-GVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKE 363 (470)
T ss_pred cCCCcCccEEEECCccccCCCcC-E-EEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHH
Confidence 11 1489999999999997765 3 766666554433321 1110011223322 23455655553 3557788
Q ss_pred HHHHHHHHHHHHHHHHhCCCeee
Q 013210 303 MKEHCHRALIFARRMKKLGLKVL 325 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~~~v~ 325 (447)
+++..++++++.+.|++.+..+.
T Consensus 364 i~~~~~~A~~l~~~l~~~g~~~~ 386 (470)
T PLN02263 364 VQKCLRNAHYLKDRLREAGISAM 386 (470)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEE
Confidence 89999999999999999887443
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=156.26 Aligned_cols=287 Identities=14% Similarity=0.196 Sum_probs=203.9
Q ss_pred chHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHH
Q 013210 99 PTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMV 178 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 178 (447)
....++|+.+|+++|.+++++++-|-..|.+.+.+++.+|.-|+..+..|.+...-+ +..|+.++....+|.++|
T Consensus 182 ~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~~Ga-----RLSgAtiRVfkHNdm~~L 256 (519)
T KOG1357|consen 182 EEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLITGA-----RLSGATTRVFRHNDMQGL 256 (519)
T ss_pred HHHHHHHHHHHHhcCCcceEEEeccccccccCcceeecCCcceeeccccchheeccc-----cccCceEEEEecCCHHHH
Confidence 455789999999999999999999999999999999999988888888777665443 557899998899999999
Q ss_pred HHhhcc------CCc------eEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCC----------CCccCC
Q 013210 179 NSAIVQ------GRT------KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV----------LSPARL 235 (447)
Q Consensus 179 ~~~i~~------~~t------~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~----------~~~~~~ 235 (447)
|+.+++ ++| -+|+++...++-|.+.+++++.+++++|.++++.||++ .+.. +.+...
T Consensus 257 Er~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~ 336 (519)
T KOG1357|consen 257 ERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPE 336 (519)
T ss_pred HHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCch
Confidence 887731 233 36778999999999999999999999999999999998 2221 112223
Q ss_pred CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc---------HHHHHHHH
Q 013210 236 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH---------LGLRMKEH 306 (447)
Q Consensus 236 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~---------l~~~~~~~ 306 (447)
.+|+++++++|++|..| |++.+++++++.++..... ...+..+++..+...+..++. ..++.+++
T Consensus 337 dvDImMGtftKSfga~G----Gyiagsk~lid~lrt~s~~--~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l 410 (519)
T KOG1357|consen 337 DVDIMMGTFTKSFGAAG----GYIAGSKELIDYLRTPSPS--ALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERL 410 (519)
T ss_pred hheeecceehhhccccc----ceecCcHHHHhhhccCCCc--eeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHH
Confidence 58999999999999754 9999999999888654321 134444554444443333222 34677888
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcc
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
.++..+++..|+..++.+.. ..++| ++-+.+-.+.....|-+.|.... +++-.++
T Consensus 411 ~~ns~yfr~~l~~~gfivyG--~~dSp-----------------Vvplll~~~~k~~~f~r~~l~~n----igvVvvg-- 465 (519)
T KOG1357|consen 411 AENSRYFRWELQKMGFIVYG--NNDSP-----------------VVPLLLYGPAKIVAFSREMLERN----IGVVVVG-- 465 (519)
T ss_pred HhhhHHHHHhhhcCcEEEec--CCCCC-----------------cceeeecCcccccHHHHHHHhcC----ceEEEEe--
Confidence 99999999999888876653 23333 44444332222344544444321 3332222
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.|+.. +.++.+|++.. ..++.+.++.+.+++++..
T Consensus 466 ----fPatp--------------l~e~r~R~c~S-a~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 466 ----FPATP--------------LLESRARFCLS-ASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred ----CCCch--------------HHHhHHHhhhc-ccccHHHHHHHHHHHhhhc
Confidence 13321 22466899999 8888888888888777664
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-16 Score=159.41 Aligned_cols=241 Identities=10% Similarity=0.111 Sum_probs=149.9
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc------C-C-CCeEEEeCCCchhHHHHHHh--------
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC------S-S-GGHVVAARTLYGGTHALLTH-------- 157 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~------~-~-gd~Vi~~~~~y~~~~~~~~~-------- 157 (447)
..++...++.++|+++.. .+.++|++||+||+..|++... . + ..+||.....||+.......
T Consensus 91 ~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~ 170 (461)
T PRK07482 91 HGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFH 170 (461)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhh
Confidence 456666788888988874 4679999999999999998653 1 1 35789999999885432110
Q ss_pred --hcCcccCeeEEEeCCC------------------CHHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHH
Q 013210 158 --FFPRACNITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSR 210 (447)
Q Consensus 158 --~~~~~~g~~~~~v~~~------------------d~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~ 210 (447)
+.+...+ +..++.. +++++++.+. .+++.+|++|.+....|.+.+ +++|.+
T Consensus 171 ~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~ 248 (461)
T PRK07482 171 QHFDLPIAR--VLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQA 248 (461)
T ss_pred hccCCCCCC--CEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHH
Confidence 1111011 1122111 3567777773 256899999999988888864 889999
Q ss_pred HHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh------hhhh
Q 013210 211 LAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------QGAL 277 (447)
Q Consensus 211 la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------~~~~ 277 (447)
+|++||+++|+||+++++.. .-.....|+++ ++|.+++.-.++ |++++++++.+.+.... ....
T Consensus 249 lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~~h~~ 325 (461)
T PRK07482 249 VLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLIT--VAKGLTSAYAPL-SGSIVGEKVWDVLEQGSDEHGAIGHGW 325 (461)
T ss_pred HHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEE--EccccccCcccc-ceeeecHHHHHHHhcccccCCccccCC
Confidence 99999999999999976632 11222467777 899998532367 67777888877664211 1122
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+..|++++..++.+.+..++. ....++..+..++|.+.|++.-.+....+ +..|.|.++.++|.
T Consensus 326 T~~gnpl~~Aaa~a~L~~~~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~v~---------------~vrG~Glm~giel~ 389 (461)
T PRK07482 326 TYSGHPICAAAALANLDILER-ENLVGNAAEVGAYFRARLRAAFGDHPLVG---------------EVRGVGMLAAVEFV 389 (461)
T ss_pred CCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCEE---------------EEeeceeEEEEEec
Confidence 344555554444444433321 11334455666666666654311100001 12268889999995
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-15 Score=154.38 Aligned_cols=285 Identities=17% Similarity=0.178 Sum_probs=174.8
Q ss_pred HHHHHHHHHHhCCCe---------EEEeCChHHHHHHHHHHhcC-----C-----CC-eEEEeCCCchhHHHHHHhhcCc
Q 013210 102 LNLSRQMAALEGTEA---------AYCTASGMSAISSVLMQLCS-----S-----GG-HVVAARTLYGGTHALLTHFFPR 161 (447)
Q Consensus 102 ~~l~~~ia~l~g~~~---------~~~tsggt~A~~~al~~l~~-----~-----gd-~Vi~~~~~y~~~~~~~~~~~~~ 161 (447)
.++-+.+++++|.++ .++|+|||+||..++.+... . .. .|++++..|.++...+. +
T Consensus 125 ~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~-~--- 200 (490)
T PLN02880 125 MIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQ-I--- 200 (490)
T ss_pred HHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHH-H---
Confidence 445556677777543 68999999999988865421 1 12 45568888888887773 2
Q ss_pred ccCe---eEEEeCCC-------CHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013210 162 ACNI---TTTFVDIS-------DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 162 ~~g~---~~~~v~~~-------d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~ 226 (447)
.|+ .++.|+.+ |+++|+++|++. .+-+|+.+..+..+|.+-|+++|+++|++||+++|||.+|+
T Consensus 201 -lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~g 279 (490)
T PLN02880 201 -AGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYA 279 (490)
T ss_pred -cCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhH
Confidence 343 24444442 889999888321 24566667778899999999999999999999999999995
Q ss_pred CC-CCCc------cCC-CCeEEEeCCCccccCCCCeeEEEEEcCh-H-HHHHHHHHhhhhhh-----------------h
Q 013210 227 PL-VLSP------ARL-GADVVVHSISKFISGGADIIAGAVCGPA-N-LVNSMMDLHQGALM-----------------L 279 (447)
Q Consensus 227 ~~-~~~~------~~~-g~di~~~S~sK~~g~~g~~igG~l~~~~-~-~~~~l~~~~~~~~~-----------------~ 279 (447)
+. ...+ ..+ ++|.++.++||+++.|-. . |+++.+. . +...+... ..+.. .
T Consensus 280 g~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~-~-g~llvr~~~~l~~~~~~~-~~Yl~~~~~~~~~~~~~~~~~i~ 356 (490)
T PLN02880 280 GSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFD-C-SLLWVKDRNALIQSLSTN-PEFLKNKASQANSVVDYKDWQIP 356 (490)
T ss_pred HHHHhCHHHHHHhcCchhcCEEEECchhhcCCCcc-E-EEEEEeCHHHHHHHHccC-HHHhcCccccccCCCChhccCcC
Confidence 53 2221 222 689999999999997754 3 6665543 2 22222110 00000 0
Q ss_pred cCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013210 280 LGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 356 (447)
Q Consensus 280 ~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l 356 (447)
.|-.......|..++ +.+.+.+++++..++++++.+.|++.+. ++..|. ..++++|.+
T Consensus 357 ~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~-------------------~~~iv~Fr~ 417 (490)
T PLN02880 357 LGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPR-------------------IFSLVCFRL 417 (490)
T ss_pred CCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------------ceEEEEEEE
Confidence 111112333443333 4455777788888999999999987754 665543 123889988
Q ss_pred CC----HHH----HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013210 357 ET----EEK----ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428 (447)
Q Consensus 357 ~~----~~~----~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 428 (447)
+. .+. ..++.++|...+ .+.++.- .. -....+|+|++...++++.
T Consensus 418 ~~~~~~~~~~~~~n~~l~~~l~~~g---~~~v~~t----------~~--------------~g~~~lR~~~~n~~tt~~d 470 (490)
T PLN02880 418 VPPKNNEDNGNKLNHDLLDAVNSSG---KIFISHT----------VL--------------SGKYVLRFAVGAPLTEERH 470 (490)
T ss_pred eCCCCChhhHHHHHHHHHHHHHhCC---CEEEEEE----------EE--------------CCEEEEEEEecCCCCCHHH
Confidence 63 111 234555554321 1111110 00 0135799999933455577
Q ss_pred HHHHHHHHHHhh
Q 013210 429 WSQFEKALSRMQ 440 (447)
Q Consensus 429 i~~l~~al~~~~ 440 (447)
++.+.+.+.++.
T Consensus 471 i~~~~~~i~~~~ 482 (490)
T PLN02880 471 VTAAWKVLQDEA 482 (490)
T ss_pred HHHHHHHHHHHH
Confidence 777777776553
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-16 Score=157.11 Aligned_cols=239 Identities=16% Similarity=0.178 Sum_probs=152.5
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC----C----CCeEEEeCCCchhHHHHHHhh-------
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS----S----GGHVVAARTLYGGTHALLTHF------- 158 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~----~----gd~Vi~~~~~y~~~~~~~~~~------- 158 (447)
..++...++.++|+++.. .+.++|++||+||+..|++.... . ..+|+.....||+........
T Consensus 92 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~ 171 (460)
T PRK06541 92 YAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFK 171 (460)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhc
Confidence 345666788888988864 36799999999999999975431 1 368999998888875433111
Q ss_pred ---cCcccCeeEEEeCC----------CC--------HHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHH
Q 013210 159 ---FPRACNITTTFVDI----------SD--------HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSR 210 (447)
Q Consensus 159 ---~~~~~g~~~~~v~~----------~d--------~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~ 210 (447)
.+...| +..++. ++ ++.+++.+. ..++.+|++|.++++.|.+.+ +++|.+
T Consensus 172 ~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~ 249 (460)
T PRK06541 172 APFEPLVPG--GFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVRE 249 (460)
T ss_pred cccCCCCCC--cEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHH
Confidence 111112 222221 11 356777773 246788999999999999987 999999
Q ss_pred HHHhcCCEEEEeCCCCCCCC-----Cc--cCCCCeEEEeCCCccccCCCC-eeEEEEEcChHHHHHHHHHhh---hhhhh
Q 013210 211 LAHDKGVTVVVDNTFSPLVL-----SP--ARLGADVVVHSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQ---GALML 279 (447)
Q Consensus 211 la~~~gi~livD~~~~~~~~-----~~--~~~g~di~~~S~sK~~g~~g~-~igG~l~~~~~~~~~l~~~~~---~~~~~ 279 (447)
+|++||+++|+||+|+++.. .. .....|+++ ++|.++ .|. ++ |++++++++++.+..... ...+.
T Consensus 250 lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~-~G~~pi-gav~~~~~i~~~~~~~~~~~~~~~T~ 325 (460)
T PRK06541 250 ICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGIT-SGYSPL-GAMIASDRLFEPFLDGPTMFLHGYTF 325 (460)
T ss_pred HHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--eccccc-CCccce-eEEEEcHHHHHHhhcCCCccccCCCC
Confidence 99999999999999965521 11 122357665 899999 454 67 778888888877653211 01122
Q ss_pred cCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 280 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 280 ~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
.+++++..++.+.+..++. ....++..++.++|.+.|+++.. +|... ...|.|.++.++|.
T Consensus 326 ~gnp~~~aaala~l~~l~~-~~~~~~~~~~g~~l~~~L~~l~~---~~~v~-------------~vrg~Gl~~~ie~~ 386 (460)
T PRK06541 326 GGHPVSAAVALANLDIFER-EGLLDHVRDNEPAFRATLEKLLD---LPIVG-------------DVRGDGYFYGIELV 386 (460)
T ss_pred CCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHhhc---CCCeE-------------EEEecceEEEEEEe
Confidence 3333333333333332221 12456778888888888876521 11111 12267889999984
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-16 Score=156.56 Aligned_cols=294 Identities=16% Similarity=0.190 Sum_probs=175.0
Q ss_pred CCCCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHH-HHHhh---------cC
Q 013210 95 RHFNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHA-LLTHF---------FP 160 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~-~~~~~---------~~ 160 (447)
+..++...++.++|+++.+. +.++|++||++|+..|++... ....+|+.....||+... .+... .+
T Consensus 109 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~ 188 (459)
T PRK06082 109 RFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGP 188 (459)
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCC
Confidence 45567778999999999853 579999999999999997542 223688888888887642 22100 00
Q ss_pred cccCeeEEEeCC--------CC--------HHHHHHhhcc-CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEE
Q 013210 161 RACNITTTFVDI--------SD--------HEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVV 220 (447)
Q Consensus 161 ~~~g~~~~~v~~--------~d--------~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~li 220 (447)
...+ +..++. .+ ++.+++.++. +++.+|++|.+.+..+.+.| +++|.++|++||+++|
T Consensus 189 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI 266 (459)
T PRK06082 189 LMAG--VERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLI 266 (459)
T ss_pred CCCC--CEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 0011 222221 11 3457777732 46889999999887544555 8999999999999999
Q ss_pred EeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHH
Q 013210 221 VDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS 293 (447)
Q Consensus 221 vD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~ 293 (447)
+||+++++... -.....|+++ ++|.+++....+ |+++.++++......... ..+..|++++..++.+.+
T Consensus 267 ~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~gG~~P~-~av~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~a~L 342 (459)
T PRK06082 267 IDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGGGLVPI-AAMITKDKYNTAAQISLG-HYTHEKSPLGCAAALATI 342 (459)
T ss_pred EechhhCCCccchhhHhHhhCCCCCEEE--ecccccCCCCcc-eEEEEcHHHHhhccCCCC-CCCCCcCHHHHHHHHHHH
Confidence 99999665321 1122467776 899999643467 777777776543321111 122344444444444444
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------HHHHHH
Q 013210 294 ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRL 365 (447)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------~~~~~l 365 (447)
..++. ....++..++.++|.+.|+++..+...++ +..|.|.++.++|... +.+..+
T Consensus 343 ~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~---------------~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~ 406 (459)
T PRK06082 343 EVIEQ-EGLLEKVKADSQFMRERLLEMKAKYPLIG---------------DVRGIGLLWGVELVTDRHTKERAYDEAEAV 406 (459)
T ss_pred HHHHh-cCHHHHHHHHHHHHHHHHHHHHhhCCCee---------------eeeeccceeEEEEccCccccCccHHHHHHH
Confidence 33321 12455667777777777765421111111 2237889999999521 123445
Q ss_pred HHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---CCCHHHHHHHHHHHHHHhhh
Q 013210 366 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---LGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 366 ~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~---~~~~~~~i~~l~~al~~~~~ 441 (447)
+..+.. .|++. . + + ..+.|||+..+ .+++++.++.|+++|.++.+
T Consensus 407 ~~~~~~---~Gvl~-~----------~-~----------------~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 454 (459)
T PRK06082 407 LYRCLN---NGLSF-K----------V-S----------------QGNVIQLSPPLIITREELTQALAILEEAIAKICQ 454 (459)
T ss_pred HHHHHh---CCCEE-E----------e-c----------------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhh
Confidence 555443 23211 1 0 0 12568887651 35666666777777766643
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=152.98 Aligned_cols=240 Identities=15% Similarity=0.193 Sum_probs=150.1
Q ss_pred CCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHh--------
Q 013210 97 FNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTH-------- 157 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~-------- 157 (447)
.++...++.++|+++.+ .+.++|++||+||+..|++.... +| .+|+.....||+.......
T Consensus 84 ~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~ 163 (449)
T PRK07481 84 THPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFR 163 (449)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccc
Confidence 46667788899998873 46799999999999999985431 23 5799999999886432211
Q ss_pred --hcCcccCeeEEEeC--------CC--CHHH--------HHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHH
Q 013210 158 --FFPRACNITTTFVD--------IS--DHEM--------VNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSR 210 (447)
Q Consensus 158 --~~~~~~g~~~~~v~--------~~--d~~~--------l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~ 210 (447)
+.+...|+ ..++ .+ |++. +++.+. .+++.+|++|.++...|.+.+ +++|.+
T Consensus 164 ~~~~~~~~g~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~ 241 (449)
T PRK07481 164 RNYEPLLPGC--FHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVRE 241 (449)
T ss_pred cccCCCCCCC--EEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHH
Confidence 01111122 2221 11 4333 344442 256899999999998898765 889999
Q ss_pred HHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh------hhhh
Q 013210 211 LAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------QGAL 277 (447)
Q Consensus 211 la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------~~~~ 277 (447)
+|++||+++|+||+++++.. .......|+++ ++|.+++.-.++ |++++++++++.+.... ....
T Consensus 242 lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~~h~~ 318 (449)
T PRK07481 242 VCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMC--LAKGITSGYVPL-GATMVNARIADAFEANADFGGAIMHGY 318 (449)
T ss_pred HHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEE--EeecccCCCcCc-eEEEEcHHHHHHHhccCccccccccCC
Confidence 99999999999999966632 11222456666 799998532467 77888888887775321 1122
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+..|++++..++.+.+..++. ....++..+..++|.+.|++...+..... +..|.|.++.++|.
T Consensus 319 T~~gnpl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~---------------~vrG~Glm~gi~l~ 382 (449)
T PRK07481 319 TYSGHPVACAAALATLDIVVR-EDLPANAAKRGAYLLEGLQPLKERFELVG---------------DVRGKGLMLALDLV 382 (449)
T ss_pred CCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcCCCeE---------------EEeecceEEEEEec
Confidence 344555544444444433322 12345556666777777765421110001 22378889999984
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-15 Score=141.93 Aligned_cols=285 Identities=19% Similarity=0.218 Sum_probs=192.3
Q ss_pred cccccccccccCCH-HHHHHhhcCCCC--CCCCCccccCCCCchHHH-HHHHHHHHhCCCeEEE-eCChHHHHHHHHHHh
Q 013210 60 MSIEASATFTVMEP-ETMRRMFAGELG--PDRDFFIYSRHFNPTVLN-LSRQMAALEGTEAAYC-TASGMSAISSVLMQL 134 (447)
Q Consensus 60 ~pi~~att~~~~~~-~~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~-l~~~ia~l~g~~~~~~-tsggt~A~~~al~~l 134 (447)
-.+-+|-.++.+.+ +++-..|.++|. -|...|+-|-..-..++. +.++..+++|++.+-+ --||+.||.+++.++
T Consensus 29 ieLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~Al 108 (413)
T COG0112 29 IELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLAL 108 (413)
T ss_pred eeeeeccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHH
Confidence 35677888888887 666677777663 233333333322233443 4455667889987533 459999999999999
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccC--eeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHH
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP 206 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g--~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~ 206 (447)
++|||+|+..+..++++...-... ...| +++..++++ |.|++++.++..++++|+.-. +-.-...|.+
T Consensus 109 l~pGDtimgm~l~~GGHltHg~~v--~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~--SaY~r~id~~ 184 (413)
T COG0112 109 LQPGDTIMGLDLSHGGHLTHGSPV--NFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGG--SAYSRPIDFK 184 (413)
T ss_pred cCCCCeEecccCCCCCcccCCCCC--CccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECc--cccccccCHH
Confidence 999999999998887765332110 1122 233333333 899999988677899998743 2234567999
Q ss_pred HHHHHHHhcCCEEEEeCCC-CCC-----CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhh
Q 013210 207 ELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALML 279 (447)
Q Consensus 207 ~I~~la~~~gi~livD~~~-~~~-----~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~ 279 (447)
++.++|++.|+++.+|.+| .++ ..+|... +|+++.|.||.+.|| | ||++..+ +++.+++...-. .+..
T Consensus 185 ~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-AdvVTtTTHKTlrGP--r-GG~Il~~~eel~kkin~aVF-Pg~q 259 (413)
T COG0112 185 RFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-ADVVTTTTHKTLRGP--R-GGIILTNDEELAKKINSAVF-PGLQ 259 (413)
T ss_pred HHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-cceEeCCcccCCCCC--C-ceEEEeccHHHHHHhhhhcC-CccC
Confidence 9999999999999999998 443 4567776 999999999999877 3 6888776 488888876322 1113
Q ss_pred cCCCccHHHHHH--HHccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013210 280 LGPTMNPKVAFE--LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 356 (447)
Q Consensus 280 ~g~~~~~~~a~~--~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l 356 (447)
.|+.+...+|.+ ....+ ..+.+..++..+|++.|++.|.+.|+++..-+..+| ++.+++
T Consensus 260 ggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdnH------------------l~lVDl 321 (413)
T COG0112 260 GGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGTDNH------------------LVLVDL 321 (413)
T ss_pred CChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCccce------------------EEEEEc
Confidence 333343333332 22233 335677788899999999999999998775432222 666666
Q ss_pred C----CHHHHHHHHHHhhc
Q 013210 357 E----TEEKANRLMNYLQN 371 (447)
Q Consensus 357 ~----~~~~~~~l~~~l~~ 371 (447)
. +...++..+.+..+
T Consensus 322 ~~~~~~Gk~ae~~L~~~~I 340 (413)
T COG0112 322 RSKGLTGKKAEAALERAGI 340 (413)
T ss_pred ccCCCCHHHHHHHHHHcCE
Confidence 5 34456666666553
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-16 Score=155.53 Aligned_cols=218 Identities=15% Similarity=0.188 Sum_probs=146.0
Q ss_pred CCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhcC-C-CCeEEEeCCCchhHHHHHHhhc---------CcccC
Q 013210 97 FNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLCS-S-GGHVVAARTLYGGTHALLTHFF---------PRACN 164 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~~-~-gd~Vi~~~~~y~~~~~~~~~~~---------~~~~g 164 (447)
.++...++.++|.++. +.+.++|++||+||+..|++.... . ..+|+.....||+......... +...+
T Consensus 91 ~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~ 170 (428)
T PRK12389 91 PTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAG 170 (428)
T ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCC
Confidence 4555677888887766 357799999999999999985432 2 3578998988988654331110 00011
Q ss_pred ------eeEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013210 165 ------ITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 165 ------~~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~ 232 (447)
..+..++..|++.+++.++. +++.+|++|.+.+..|.+.| +++|.++|++||+++|+||+++++....
T Consensus 171 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~ 250 (428)
T PRK12389 171 VPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMY 250 (428)
T ss_pred CCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCc
Confidence 13445566689999888832 46889999999999999887 9999999999999999999997652211
Q ss_pred ------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh--hhhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 233 ------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH--QGALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 233 ------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~--~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
.....|++ +++|.+++ |.++ |++++++++++.+.... ....+..|++++..++.+.+..++.- ...+
T Consensus 251 ~~a~~~~gv~PDiv--t~gK~lgg-G~Pi-~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~-~l~~ 325 (428)
T PRK12389 251 GGAQDLLGVEPDLT--ALGKIIGG-GLPI-GAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQE-GVYE 325 (428)
T ss_pred chhhHHhCCCCCee--eechhhcC-CCce-eEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcc-cHHH
Confidence 12235665 58999985 5778 66688888888774211 11222344444444444444433321 2455
Q ss_pred HHHHHHHHHHHHHHh
Q 013210 305 EHCHRALIFARRMKK 319 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~ 319 (447)
+..++.++|.+.|++
T Consensus 326 ~~~~~g~~l~~~L~~ 340 (428)
T PRK12389 326 KLDRLGAMLEEGILE 340 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666677777777765
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-15 Score=155.23 Aligned_cols=296 Identities=14% Similarity=0.195 Sum_probs=181.1
Q ss_pred CCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------C-CCeEEEeCCCchhHHHHHHhhc-----Cc
Q 013210 97 FNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLTHFF-----PR 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~~~~-----~~ 161 (447)
.++...+|.++|+++.. .+.++|++||+||+..|++.... + ..+||.....||+......... ..
T Consensus 88 ~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~ 167 (459)
T PRK05965 88 GSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHR 167 (459)
T ss_pred CCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhc
Confidence 45556778888888863 46799999999999999975431 2 2579999999988753211110 00
Q ss_pred ccC---eeEEEeCC---------CC--------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHHHHHh
Q 013210 162 ACN---ITTTFVDI---------SD--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHD 214 (447)
Q Consensus 162 ~~g---~~~~~v~~---------~d--------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~la~~ 214 (447)
..+ ..+..++. +| ++++++.++. +++.+|++|.++...|.+.+ +++|.++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~ 247 (459)
T PRK05965 168 GFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRE 247 (459)
T ss_pred ccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 011 01122221 12 2567776732 56899999999998898764 8899999999
Q ss_pred cCCEEEEeCCCCCCCC-----Cc--cCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHh------hhhhhhc
Q 013210 215 KGVTVVVDNTFSPLVL-----SP--ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH------QGALMLL 280 (447)
Q Consensus 215 ~gi~livD~~~~~~~~-----~~--~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~------~~~~~~~ 280 (447)
||+++|+||+++++.. .. .....|+++ ++|.+++ | .++ |++++++++.+.+.... ....+..
T Consensus 248 ~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~~~~h~~T~~ 323 (459)
T PRK05965 248 LGILFVADEVITGFGRTGPLFACEAEGVVPDLMT--VAKGLTS-GYVPM-GAVLMSDHVYQGIADGAGAAAPVGHGYTYS 323 (459)
T ss_pred cCCEEEEechhccCccCchhhhHhhcCCCCCeEE--echhhcc-CCcce-eEEEEcHHHHHHHhccccccccccccCCCC
Confidence 9999999999976632 11 122456766 8999995 5 478 77888888887764310 1122344
Q ss_pred CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-
Q 013210 281 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE- 359 (447)
Q Consensus 281 g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~- 359 (447)
|++++..++.+.+..++. ....++..+..++|.+.|++.. + +|... +..|.|.++.+++...
T Consensus 324 gnpl~~Aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~l~~l~-~--~~~v~-------------~vrG~Gl~~gie~~~~~ 386 (459)
T PRK05965 324 AHPVSAAVGLEVLRLYHE-GGLLANGQKAGPRFAAGLDALR-A--HPLVG-------------DVRGRGLLGALELVADK 386 (459)
T ss_pred CCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhc-c--CCCEE-------------EEeecceEEEEEEeccc
Confidence 555544444444433321 1234556667777777776642 1 22111 2237889999998521
Q ss_pred ----------HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---CCCHH
Q 013210 360 ----------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---LGTLD 426 (447)
Q Consensus 360 ----------~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~---~~~~~ 426 (447)
..+..+...+.. .|++....| .+.||+++.+ .++++
T Consensus 387 ~~~~~~~~~~~~~~~i~~~~~~---~Gll~~~~g----------------------------~~~i~~~PpL~it~~ei~ 435 (459)
T PRK05965 387 ATKTPFDAALDPADRIFDRAYA---NGLVFRAFG----------------------------DGVLGFAPALCCTEGEFD 435 (459)
T ss_pred cccCCCCchhHHHHHHHHHHHh---CCeEEEecC----------------------------CcEEEEECCCcCCHHHHH
Confidence 123455555554 333221111 2457777331 57777
Q ss_pred HHHHHHHHHHHHhhhcCC
Q 013210 427 QRWSQFEKALSRMQDSGV 444 (447)
Q Consensus 427 ~~i~~l~~al~~~~~~~~ 444 (447)
+.++.|.++|+++.+.+.
T Consensus 436 ~~~~~l~~~l~~~~~~~~ 453 (459)
T PRK05965 436 LIFERTRKTLDDVLADPD 453 (459)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 778888888877755443
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-16 Score=155.00 Aligned_cols=288 Identities=13% Similarity=0.154 Sum_probs=175.8
Q ss_pred CCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------C-CCeEEEeCCCchhHHHHHHh---------
Q 013210 97 FNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLTH--------- 157 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~~--------- 157 (447)
.++...++.++|+++.. .+.++|++||+||+..|++.... + ..+||.....||+.......
T Consensus 90 ~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~ 169 (445)
T PRK09221 90 GHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRK 169 (445)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhh
Confidence 45666788899998864 46899999999999999975431 1 25799999999876432110
Q ss_pred -hcCcccCeeEEEeCCC------------------CHHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHH
Q 013210 158 -FFPRACNITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRL 211 (447)
Q Consensus 158 -~~~~~~g~~~~~v~~~------------------d~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~l 211 (447)
+.+. ...+.+++.. .++++++.++ .+++.+|++|.+....|.+.| +++|.++
T Consensus 170 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~l 247 (445)
T PRK09221 170 MFGGL--LPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREI 247 (445)
T ss_pred ccCCC--CCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHH
Confidence 0110 0112222211 1356677663 146889999999999999988 9999999
Q ss_pred HHhcCCEEEEeCCCCCCCC-----CccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh------hhhhh
Q 013210 212 AHDKGVTVVVDNTFSPLVL-----SPARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------QGALM 278 (447)
Q Consensus 212 a~~~gi~livD~~~~~~~~-----~~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------~~~~~ 278 (447)
|++||+++|+||+++++.. ....++ .|+++ ++|.+++...++ |++++++++++.+.... ....+
T Consensus 248 c~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~--~gK~l~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~~~~~T 324 (445)
T PRK09221 248 CDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIIT--FAKGLTNGAIPM-GAVIASDEIYDAFMQGPEYAIEFFHGYT 324 (445)
T ss_pred HHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEE--eccccccCcccc-eeeEEcHHHHHhhccCcccccccccccC
Confidence 9999999999999965531 111223 46654 899998543556 77788888887764310 01112
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
..++.+...++.+.+..++. ....++..++.++|.+.|+++.. +|.+. +..|.|.++.+++..
T Consensus 325 ~~~~pl~~aaa~a~L~~i~~-~~l~~~~~~~g~~l~~~l~~l~~---~~~v~-------------~vrg~Gl~~~v~~~~ 387 (445)
T PRK09221 325 YSAHPVACAAGLATLDIYRE-EDLFERAAELAPYFEDAVHSLKG---LPHVI-------------DIRNIGLVAGIELAP 387 (445)
T ss_pred CCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcc---CCCEE-------------EEecCceEEEEEEec
Confidence 33444433333333333221 12456677777888888876521 11111 112677788888753
Q ss_pred H-----HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 359 E-----EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 359 ~-----~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
. ..+..+...+.. .|+ .+..+ .+.|||++. ...+++.|+.+.
T Consensus 388 ~~~~~~~~~~~~~~~~~~---~Gv-~~~~~----------------------------~~~lr~~Pp-l~~t~~eid~~~ 434 (445)
T PRK09221 388 RPGAPGARGYEAFMKCFE---KGL-LVRYT----------------------------GDTIALSPP-LIIEKAQIDELV 434 (445)
T ss_pred ccccccchHHHHHHHHHH---CCe-EEeec----------------------------CCEEEEECC-ccCCHHHHHHHH
Confidence 1 123455566654 232 21111 256999987 666666666666
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
++|++.
T Consensus 435 ~~l~~~ 440 (445)
T PRK09221 435 DALGDA 440 (445)
T ss_pred HHHHHH
Confidence 666544
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=161.36 Aligned_cols=220 Identities=17% Similarity=0.158 Sum_probs=153.1
Q ss_pred chHHHHHHHHHHHhCCCe-EEEeCChHHHHHHHHHHhcC--------CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 99 PTVLNLSRQMAALEGTEA-AYCTASGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~-~~~tsggt~A~~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
....++++.|+++.|.+. .++.++|+.|..++++++.. ..+.|+++...|+.....+. ..|++++.
T Consensus 530 q~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~-----~~G~~Vv~ 604 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAA-----MAGMQVVP 604 (939)
T ss_pred HHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHH-----HCCCEEEE
Confidence 456789999999999987 46667788777766655432 23578899999976665552 36889888
Q ss_pred eCCC-----CHHHHHHhhcc--CCceEEEEEcCCCCCccccC-HHHHHHHHHhcCCEEEEeCCC-C-C-CCCCccCCCCe
Q 013210 170 VDIS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN-IPELSRLAHDKGVTVVVDNTF-S-P-LVLSPARLGAD 238 (447)
Q Consensus 170 v~~~-----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~-l~~I~~la~~~gi~livD~~~-~-~-~~~~~~~~g~d 238 (447)
++.+ |+++|++.+.. +++++|++.+|+| +|.+.| +++|+++||++|..+++|.++ . . ...+|.++|+|
T Consensus 605 V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaD 683 (939)
T TIGR00461 605 VNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGAD 683 (939)
T ss_pred eccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCC
Confidence 8864 89999999942 5899999999999 799877 999999999999999999998 3 2 23456788999
Q ss_pred EEEeCCCcccc------CCCCeeEEEEEcChHHHHHHHHH----------hhh-----hhhhcCCCccHHHHHHHHc--c
Q 013210 239 VVVHSISKFIS------GGADIIAGAVCGPANLVNSMMDL----------HQG-----ALMLLGPTMNPKVAFELSE--R 295 (447)
Q Consensus 239 i~~~S~sK~~g------~~g~~igG~l~~~~~~~~~l~~~----------~~~-----~~~~~g~~~~~~~a~~~~~--~ 295 (447)
++++|.||+++ ||| + |+++.++++...+-.. +.. ....++.......++..++ +
T Consensus 684 i~~~s~HKtf~~P~G~GGPg--~-G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG 760 (939)
T TIGR00461 684 VCHLNLHKTFCIPHGGGGPG--M-GPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMG 760 (939)
T ss_pred EEEecCCccCCCCCCCCCCC--e-EEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHC
Confidence 99999999665 333 4 8888876654433110 000 0001111111223333322 3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013210 296 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 328 (447)
Q Consensus 296 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~ 328 (447)
-+.+.+..+....+++++.+.|++ +.++.+++
T Consensus 761 ~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~ 792 (939)
T TIGR00461 761 NEGLPKASVVAILNANYMATRLKD-HYPILFVG 792 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCcccccC
Confidence 344656666677899999999987 34555543
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-15 Score=152.76 Aligned_cols=288 Identities=12% Similarity=0.140 Sum_probs=174.2
Q ss_pred CCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------C-CCeEEEeCCCchhHHHHHHh---------
Q 013210 97 FNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLTH--------- 157 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~~--------- 157 (447)
.++...++.++|+++.. .+.++|++||+||+..|++.... + ..+||.....||+.......
T Consensus 87 ~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~ 166 (442)
T PRK13360 87 GHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRK 166 (442)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhh
Confidence 45666788888988863 46899999999999999975431 1 25799999999886422100
Q ss_pred -hcCcccCeeEEEeCCC------------------CHHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHH
Q 013210 158 -FFPRACNITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRL 211 (447)
Q Consensus 158 -~~~~~~g~~~~~v~~~------------------d~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~l 211 (447)
+.+. ...+.+++.. .+++|++.++ .+++.+|++|.+....|.+.| +++|.++
T Consensus 167 ~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~l 244 (442)
T PRK13360 167 AFGAL--LPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREI 244 (442)
T ss_pred ccCCC--CCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHH
Confidence 0110 0112222221 1457777773 256889999999999999988 9999999
Q ss_pred HHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh------hhhhh
Q 013210 212 AHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------QGALM 278 (447)
Q Consensus 212 a~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------~~~~~ 278 (447)
|++||+++|+||+++++.. .......|++ +++|.+++...++ |+++.++++.+.+.... ....+
T Consensus 245 c~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv--t~gK~l~gG~~P~-gav~~~~~i~~~~~~~~~~~~~~~~~~T 321 (442)
T PRK13360 245 CDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL--TCAKGLTNGAIPM-GAVFVSSEIHDAFMQGPEAGIEFFHGYT 321 (442)
T ss_pred HHHcCCEEEEechhhCCCCCccchhhhhcCCCCcee--eeeeccccCccce-EEEEEcHHHHHHhhcCCccccccccCCC
Confidence 9999999999999965521 1112235665 5899998643567 66777888887664311 01122
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
..++.++..++.+.+..++. ....++..++.+++.+.|++... +|.+. +..|.|.++.+.+..
T Consensus 322 ~~g~pl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~l~~l~~---~~~v~-------------~vrG~Gl~~~~~l~~ 384 (442)
T PRK13360 322 YSGHPLACAAALATLDLYER-EGLLTRAARLAPYWEDALHSLRD---APHVI-------------DIRNLGLVGAVELAP 384 (442)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHhhc---CCCee-------------eeeccceEEEEEEec
Confidence 33444443333333333221 12445566677777777765421 11110 112567777777742
Q ss_pred -----HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 359 -----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 359 -----~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
...+..+...+.. .|+ .+..+ .+.+||++. ...+++.|+.+.
T Consensus 385 ~~~~~~~~~~~~~~~l~~---~Gv-l~~~~----------------------------~~~lr~~Pp-l~~t~~eid~~~ 431 (442)
T PRK13360 385 RDGKPGKRAYEVFLKCFE---KGL-MIRYT----------------------------GDILALSPP-LIIEEAQIDELF 431 (442)
T ss_pred CCCCcchhHHHHHHHHHH---CCc-EEEec----------------------------CCEEEEeCC-CccCHHHHHHHH
Confidence 1234456556554 232 11111 256899977 666666666666
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
++|++.
T Consensus 432 ~~l~~~ 437 (442)
T PRK13360 432 DILAQA 437 (442)
T ss_pred HHHHHH
Confidence 666544
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-15 Score=151.44 Aligned_cols=252 Identities=13% Similarity=0.164 Sum_probs=152.4
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhc---C-cccCe----
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF---P-RACNI---- 165 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~---~-~~~g~---- 165 (447)
++...++.++|+++.+. +.++|++||+||+..|++... ....+|+.....||+......... . ...+.
T Consensus 95 ~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~ 174 (457)
T PRK05639 95 SERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLM 174 (457)
T ss_pred CHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCC
Confidence 45567788888888753 579999999999999998643 234578888988988654321110 0 00111
Q ss_pred -eEEEeCCC-------------CH--------HHHHHhhc-----cCCceEEEEEcCCCCCccccC----HHHHHHHHHh
Q 013210 166 -TTTFVDIS-------------DH--------EMVNSAIV-----QGRTKVLYFESISNPTLAVAN----IPELSRLAHD 214 (447)
Q Consensus 166 -~~~~v~~~-------------d~--------~~l~~~i~-----~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~ 214 (447)
.+.+++.. +. +.+++.+. .+++.+|++|.++...|.+.| +++|.++|++
T Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~ 254 (457)
T PRK05639 175 PNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDE 254 (457)
T ss_pred CCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence 13333322 12 23444431 357899999999998898765 8899999999
Q ss_pred cCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHH
Q 013210 215 KGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK 287 (447)
Q Consensus 215 ~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~ 287 (447)
||+++|+||+++++... ......|+++ ++|.+++ |..+ |++++++++++ +.. .....+..++++...
T Consensus 255 ~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g-G~pi-~av~~~~~i~~-~~~-~~~~~T~~g~p~~~a 328 (457)
T PRK05639 255 HGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVAS-GMGL-SGVIGRKELMD-LTS-GSALLTPAANPVISA 328 (457)
T ss_pred cCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcC-CCcc-eeEEehHHHHh-hcC-CCcccCCCcCHHHHH
Confidence 99999999999655311 1223467777 8999995 5667 88888888877 221 111122333333333
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC------HHH
Q 013210 288 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET------EEK 361 (447)
Q Consensus 288 ~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~------~~~ 361 (447)
++.+.+..++. ....++..+..++|.+.|+++..+...++ +..|.|.++.+++.. .+.
T Consensus 329 aa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~~---------------~VrG~Gl~~gve~~~~~~~~~~~~ 392 (457)
T PRK05639 329 AAEATLEIIEE-ENLLKNALKVGEFIKKRLLEMKESFEVIG---------------DVRGKGLMIGVEIVKENGKPDPEL 392 (457)
T ss_pred HHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHHHHHhCCCEE---------------eeccceeEEEEEEecCCCCCCHHH
Confidence 33333322211 12345555666777777765311100001 223788999999842 223
Q ss_pred HHHHHHHhhc
Q 013210 362 ANRLMNYLQN 371 (447)
Q Consensus 362 ~~~l~~~l~~ 371 (447)
+..+...+..
T Consensus 393 ~~~~~~~~~~ 402 (457)
T PRK05639 393 TGKICWRAFE 402 (457)
T ss_pred HHHHHHHHHh
Confidence 4556666654
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=152.48 Aligned_cols=290 Identities=12% Similarity=0.151 Sum_probs=175.6
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC------C-CCeEEEeCCCchhHHHHHHhhcC------
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS------S-GGHVVAARTLYGGTHALLTHFFP------ 160 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~------~-gd~Vi~~~~~y~~~~~~~~~~~~------ 160 (447)
..++...++.++|+++.+ .+.++|++||+||+..|++.... . ..+||.....||+..........
T Consensus 83 ~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~ 162 (428)
T PRK07986 83 ITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMH 162 (428)
T ss_pred cCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhh
Confidence 356667788889988874 36799999999999999985432 2 35899999999875422211000
Q ss_pred cccC---eeEEEeC-----------CCCHHHHHHhhcc--CCceEEEEEcC-CCCCccccC----HHHHHHHHHhcCCEE
Q 013210 161 RACN---ITTTFVD-----------ISDHEMVNSAIVQ--GRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTV 219 (447)
Q Consensus 161 ~~~g---~~~~~v~-----------~~d~~~l~~~i~~--~~t~lV~i~~~-~NptG~v~~----l~~I~~la~~~gi~l 219 (447)
...+ ..+.+++ ..|++++++.++. +++.+|++|.+ +...|.+.+ +++|.++|++||+++
T Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lL 242 (428)
T PRK07986 163 SLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILL 242 (428)
T ss_pred hccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 0000 0112222 1256677777732 46789999995 666676542 889999999999999
Q ss_pred EEeCCCCCCCC-------CccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHh----hhhhhhcCCCccHH
Q 013210 220 VVDNTFSPLVL-------SPARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH----QGALMLLGPTMNPK 287 (447)
Q Consensus 220 ivD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~----~~~~~~~g~~~~~~ 287 (447)
|+||+++++.. .-.....|+++ ++|.+++ | ..+ |++++++++.+.+.... ....+..|+++...
T Consensus 243 I~DEv~tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~g-G~~p~-~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~a 318 (428)
T PRK07986 243 IADEIATGFGRTGKLFACEHAGIAPDILC--LGKALTG-GTMTL-SATLTTREVAETISNGEAGCFMHGPTFMGNPLACA 318 (428)
T ss_pred EEeccccCCccCCCeeeecccCCCCCEEE--echhhhC-CcccC-cchhchHHHHHHhhcCCCCccccCCCCCcCHHHHH
Confidence 99999965521 11122356665 8999984 5 466 77788888888775421 01122334433333
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHH
Q 013210 288 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN 367 (447)
Q Consensus 288 ~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~ 367 (447)
++.+.+..++. ....++..++.++|.+.|++... +|.+. +..|.|.++.+++.....+..+..
T Consensus 319 aa~a~L~~i~~-~~~~~~~~~~g~~l~~~l~~l~~---~~~i~-------------~vRg~Gl~~~ve~~~~~~~~~~~~ 381 (428)
T PRK07986 319 VANASLSLLES-GDWQQQVAAIEAQLREELAPLRD---APMVA-------------DVRVLGAIGVVETTRPVNMAALQR 381 (428)
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHhc---CCCEE-------------eEeccceEEEEEeCCcccHHHHHH
Confidence 33333333221 12456667777778887776421 12111 223678899999975433556777
Q ss_pred HhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 368 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 368 ~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+.. .|+ .+... .+.|||+.. ..-+++.++.+.++|++.
T Consensus 382 ~l~~---~Gl-~~~~~----------------------------g~~i~~~Pp-l~it~~ei~~~~~~l~~~ 420 (428)
T PRK07986 382 FFVE---QGV-WIRPF----------------------------GKLIYLMPP-YIILPEQLQRLTAAVNRA 420 (428)
T ss_pred HHHH---CCc-EEEec----------------------------CCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 7765 232 21110 146788777 655566666666665544
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-15 Score=144.97 Aligned_cols=222 Identities=14% Similarity=0.053 Sum_probs=147.6
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH-HHhhcCcccCeeEEEeC----
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVD---- 171 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~-~~~~~~~~~g~~~~~v~---- 171 (447)
+++++.++|+.+++++|.+.+++|++||.|+++++...+++||.| +...|..+... +. ..|....-++
T Consensus 76 gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~-----~~Ga~fvDi~~d~a 148 (460)
T PRK13237 76 GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQE-----LNGGIFVDIIIDEA 148 (460)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHH-----hCCcEEEeeecccc
Confidence 567889999999999999999999999999998766567899954 44444433333 31 1344322221
Q ss_pred -------C----CCHHHHHHhhcc---CCceEEEEEcCCCCC-cccc---CHHHHHHHHHhcCCEEEEeCCC-CC---CC
Q 013210 172 -------I----SDHEMVNSAIVQ---GRTKVLYFESISNPT-LAVA---NIPELSRLAHDKGVTVVVDNTF-SP---LV 229 (447)
Q Consensus 172 -------~----~d~~~l~~~i~~---~~t~lV~i~~~~Npt-G~v~---~l~~I~~la~~~gi~livD~~~-~~---~~ 229 (447)
. .|+++|+++|.. +++++|.++.++|.. |... ++++|.++|++||+.+|.|.++ .+ |.
T Consensus 149 ~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI 228 (460)
T PRK13237 149 HDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFI 228 (460)
T ss_pred cccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhh
Confidence 1 189999999932 245678888888888 5665 6899999999999999999998 22 11
Q ss_pred ------CCccC---------CCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhh-hhhcCCCccHHHHHHH
Q 013210 230 ------LSPAR---------LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGA-LMLLGPTMNPKVAFEL 292 (447)
Q Consensus 230 ------~~~~~---------~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~-~~~~g~~~~~~~a~~~ 292 (447)
+.... ...|.+++|++|.++.+ +||+++. ++++.++++...--+ ++.+-..++.....++
T Consensus 229 ~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~---~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~al 305 (460)
T PRK13237 229 KEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN---IGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAM 305 (460)
T ss_pred cccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC---CceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHH
Confidence 11111 14799999999999975 4688755 678888887663210 1112222222111111
Q ss_pred HccCC-cHH-HHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013210 293 SERIP-HLG-LRMKEHCHRALIFARRMKKLGLKVLYPG 328 (447)
Q Consensus 293 ~~~~~-~l~-~~~~~~~~~~~~l~~~L~~~~~~v~~p~ 328 (447)
..++. ... ...++.-+..++|.+.|.+.|..+..|.
T Consensus 306 Avgl~E~~~~~y~~~ri~~~~~l~~~L~~~Gvpv~~p~ 343 (460)
T PRK13237 306 AIGIEESVQYEYIEHRVGQVRYLGEKLLAAGVPIVEPV 343 (460)
T ss_pred HhHHHhhchHHHHHHHHHHHHHHHHHHHHCCCceecCC
Confidence 11221 111 3445556778899999999998877764
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=150.65 Aligned_cols=289 Identities=13% Similarity=0.141 Sum_probs=174.2
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhhcC-----
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFP----- 160 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~----- 160 (447)
..++...++.++|+++.+ .+.++|++||+||+..|++.... ++ .+|+.....||+..........
T Consensus 80 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~ 159 (422)
T PRK05630 80 LTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGM 159 (422)
T ss_pred cCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccc
Confidence 345666788889988864 46899999999999999975431 22 5799999999885433211100
Q ss_pred -cccC---eeEEEeCCC--------C----HHHHHHhhccCCceEEEEEcC-CCCCccccC----HHHHHHHHHhcCCEE
Q 013210 161 -RACN---ITTTFVDIS--------D----HEMVNSAIVQGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTV 219 (447)
Q Consensus 161 -~~~g---~~~~~v~~~--------d----~~~l~~~i~~~~t~lV~i~~~-~NptG~v~~----l~~I~~la~~~gi~l 219 (447)
...+ ..+.+++.. + .+.+++.+ .+++.+|++|.+ +...|.+.+ +++|.++|++||+++
T Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~ll 238 (422)
T PRK05630 160 HSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLI-DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILL 238 (422)
T ss_pred cccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHH-hhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 0000 011222211 1 23455555 468999999995 888887653 889999999999999
Q ss_pred EEeCCCCCCCCC-----c--cCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHh-----hhhhhhcCCCccH
Q 013210 220 VVDNTFSPLVLS-----P--ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH-----QGALMLLGPTMNP 286 (447)
Q Consensus 220 ivD~~~~~~~~~-----~--~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~-----~~~~~~~g~~~~~ 286 (447)
|+||+++++... . .....|++ +++|.+++ | ..+ |++++++++.+.+.... ....+..|++...
T Consensus 239 I~DEv~tG~GrtG~~~a~~~~gv~PDi~--t~gK~l~g-G~~p~-~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~ 314 (422)
T PRK05630 239 IADEIATGFGRTGELFATLAAGVTPDIM--CVGKALTG-GFMSF-AATLCTDKVAQLISTPNGGGALMHGPTFMANPLAC 314 (422)
T ss_pred EEecceeCCCcCchhhHHHhcCCCCCee--eeechhhc-Ccccc-ceeeccHHHHHHHhccCCCCccccCCCCcCCHHHH
Confidence 999999665321 1 12235666 58999974 4 345 88888989888774210 1112233443333
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHH
Q 013210 287 KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLM 366 (447)
Q Consensus 287 ~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~ 366 (447)
.++.+.+..++.. ...++..++.++|.+.|++.. + +|.+. +..|.|.++.+++.+...+..+.
T Consensus 315 aaa~aaL~~l~~~-~~~~~~~~~g~~l~~~L~~l~-~--~~~v~-------------~vRg~Gl~~~ie~~~~~~~~~~~ 377 (422)
T PRK05630 315 AVAHASLEIIETG-MWRKQVKRIEAELIAGLSPLA-H--LPGVA-------------DVRVLGAIGVVEMEQPVDMEEAT 377 (422)
T ss_pred HHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHhh-c--CCCee-------------eeeccccEEEEEECCcccHHHHH
Confidence 3333333333221 234566666777777776431 1 22211 22378999999997543345666
Q ss_pred HHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 367 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 367 ~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..+.. .|++. .. . .+.|||... ..-++++++.+.++|++.
T Consensus 378 ~~~~~---~Gl~~-~~-------------------------~---g~~l~~~Pp-L~it~~~i~~~~~~l~~a 417 (422)
T PRK05630 378 QAAVD---HGVWL-RP-------------------------F---GRLVYVMPP-YITTSEQIAQICAALAAA 417 (422)
T ss_pred HHHHH---CCeEE-Ee-------------------------c---CCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 66664 23221 10 0 146788887 666666666666666544
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-15 Score=162.59 Aligned_cols=274 Identities=18% Similarity=0.182 Sum_probs=189.1
Q ss_pred hHHHHHHHHHHHhCCCe--EEEeCChHHHHHHHHHHh-cCC--CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCC
Q 013210 100 TVLNLSRQMAALEGTEA--AYCTASGMSAISSVLMQL-CSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~~--~~~tsggt~A~~~al~~l-~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d 174 (447)
.+.+++..++++.|.+. +-++.++|++.+.+++++ .++ +++|++++.+|+.+...++..... .|++++.++.++
T Consensus 122 al~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~-~G~ev~~~~~~~ 200 (954)
T PRK05367 122 ALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEP-LGIEVVVGDAAK 200 (954)
T ss_pred HHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHh-CCCEEEEecCcc
Confidence 34678899999999864 789999999999888776 344 389999999999999888665555 799999988653
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCcc-----
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKF----- 247 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~----- 247 (447)
+ +..+++..+++.+| |.+|.+.|+++|+++||++|+++++|..+ ..+..+|.++|+|++++|.+||
T Consensus 201 --d----~~~~~~~~vlvq~p-~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g 273 (954)
T PRK05367 201 --A----LDHDDVFGVLLQYP-GTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMG 273 (954)
T ss_pred --C----CCcccEEEEEEecC-CCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCC
Confidence 1 21335666666665 67999999999999999999999999866 2334578889999999999999
Q ss_pred ccCCCCeeEEEEEcChHHHHHHHHHhhh---------------------hhhhcCC--CccHHH--HHH-----HHccCC
Q 013210 248 ISGGADIIAGAVCGPANLVNSMMDLHQG---------------------ALMLLGP--TMNPKV--AFE-----LSERIP 297 (447)
Q Consensus 248 ~g~~g~~igG~l~~~~~~~~~l~~~~~~---------------------~~~~~g~--~~~~~~--a~~-----~~~~~~ 297 (447)
+|||+ . |+++.++++...+....-+ ..+-.++ ....++ +.. ...+-.
T Consensus 274 ~GGP~--a-Gflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~ 350 (954)
T PRK05367 274 FGGPH--A-AYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPE 350 (954)
T ss_pred CCCCC--E-EEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhh
Confidence 78776 3 9999998877655211000 0001111 111111 111 111222
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGF 377 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~ 377 (447)
.+....++...++.++++.|+..+.++..+. ....+.|.++. ...++.++|... |+
T Consensus 351 Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~-------------------~f~~~~~~~~~--~~~~i~~~l~~~---gi 406 (954)
T PRK05367 351 GLKAIARRVHRLAAILAAGLRALGLEVVHDS-------------------FFDTLTVEVGG--DAAAVLARALAA---GI 406 (954)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcccCCCC-------------------CCCeEEEeCCC--CHHHHHHHHHHC---Cc
Confidence 3444556677888899999977666554332 22377777652 356777777652 22
Q ss_pred ccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 378 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 378 ~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
- .. -+.++.||+|+. ..+++++|+.|.++|.
T Consensus 407 -~--~~-------------------------~~~~~~l~is~~-e~~t~~did~l~~~l~ 437 (954)
T PRK05367 407 -N--LR-------------------------RVDDDHVGISLD-ETTTREDLAALLAVFG 437 (954)
T ss_pred -e--ec-------------------------cccCCEEEEEec-ccCCHHHHHHHHHHHc
Confidence 1 11 011467999999 9999999999999986
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=154.76 Aligned_cols=241 Identities=13% Similarity=0.177 Sum_probs=149.6
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------C-CCeEEEeCCCchhHHHHHHhhcCc----
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLTHFFPR---- 161 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~~~~~~---- 161 (447)
..++...++.++|+++.. .+.++|++||+||+..|++.... + ..+|+.....||+........-..
T Consensus 92 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~ 171 (466)
T PRK07036 92 MTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADR 171 (466)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCccc
Confidence 345666788888888764 46799999999999999985421 2 257888888898865332111000
Q ss_pred -cc---CeeEEEeCCCC-----------------HHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHHHH
Q 013210 162 -AC---NITTTFVDISD-----------------HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAH 213 (447)
Q Consensus 162 -~~---g~~~~~v~~~d-----------------~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~la~ 213 (447)
.+ ...+.+++..+ ++.+++.+. .+++.+|++|.+....|.+.| +++|.++|+
T Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~ 251 (466)
T PRK07036 172 TEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICR 251 (466)
T ss_pred ccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHH
Confidence 00 01122222111 234455442 256899999999999999876 899999999
Q ss_pred hcCCEEEEeCCCCCCCC-----Ccc---CCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHH------hhhhhh
Q 013210 214 DKGVTVVVDNTFSPLVL-----SPA---RLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDL------HQGALM 278 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~-----~~~---~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~------~~~~~~ 278 (447)
+||+++|+||+++++.. ... ....|+++ ++|.+++ | .++ |++++++++.+.+... .....+
T Consensus 252 ~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt--~gK~l~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~~~~~~~T 327 (466)
T PRK07036 252 RYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIIT--FAKGLTS-GYQPL-GAVIISERLLDVISGPNAKGNVFTHGFT 327 (466)
T ss_pred HcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEE--Ecccccc-Ccccc-EEEEEcHHHHHHHhcccCcCcccccCCC
Confidence 99999999999966521 111 22356665 8999985 5 367 7777888988876531 011123
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
..|++++..++.+.+..++. ....++..+..++|.+.|++.. + +|... +..|.|.++.++|.
T Consensus 328 ~~gnpl~~aaa~a~Le~i~~-~~l~~~~~~~g~~l~~~L~~l~-~--~~~v~-------------~vrG~Gl~~~ve~~ 389 (466)
T PRK07036 328 YSGHPVACAAALKNIEIMER-EGLCEHVREVGPYFEERLASLR-E--LPLVG-------------DVRGDHLMACVECV 389 (466)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHhc-c--CCCEE-------------EEEeeceEEEEEEc
Confidence 34444444444444333321 1244566677777777776531 1 12110 22378899999995
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=152.59 Aligned_cols=240 Identities=12% Similarity=0.093 Sum_probs=146.1
Q ss_pred CCCchHHHHHHHHHHHhCC----Ce-EEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCc---ccC-
Q 013210 96 HFNPTVLNLSRQMAALEGT----EA-AYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR---ACN- 164 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~----~~-~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~---~~g- 164 (447)
..++...++.++|+++... .. +++++||+||+..|++... ....+|+.....||+........... ..+
T Consensus 79 ~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~ 158 (442)
T TIGR00709 79 LTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAV 158 (442)
T ss_pred cCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccC
Confidence 4466667888899888642 24 4556999999999998543 22357999999998876444221110 000
Q ss_pred ----eeEEEeCCCC-------------H----HHHHHhhc-----cCCceEEEEEcCCCCCccccC----HHHHHHHHHh
Q 013210 165 ----ITTTFVDISD-------------H----EMVNSAIV-----QGRTKVLYFESISNPTLAVAN----IPELSRLAHD 214 (447)
Q Consensus 165 ----~~~~~v~~~d-------------~----~~l~~~i~-----~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~ 214 (447)
..+.+++..+ . +.+++.+. .+++.+|++|+++++.|.+.+ +++|.++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~ 238 (442)
T TIGR00709 159 GMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRK 238 (442)
T ss_pred CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence 1122232211 1 12333331 146889999999888887753 8899999999
Q ss_pred cCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHH
Q 013210 215 KGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK 287 (447)
Q Consensus 215 ~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~ 287 (447)
||+++|+||+|+++.... .....|+++ ++|.+++ |.++ |+++.+++ ++.+..... ..+..|++++..
T Consensus 239 ~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~-G~Pi-gav~~~~~-~~~~~~~~~-~~T~~gnpla~a 312 (442)
T TIGR00709 239 HDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG-GLPL-AVLLIAPE-FDAWQPAGH-TGTFRGNQLAMV 312 (442)
T ss_pred cCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC-Cccc-EEEEEchH-HhccCCCcC-CCCCCcCHHHHH
Confidence 999999999997664211 122357776 8999997 7999 77777766 444422111 223445555555
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 288 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 288 ~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
++.+.+..++. ....++..++.++|.+.|+++..+ +|... +..|.|.++.+++.
T Consensus 313 aa~a~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~v~-------------~vrG~Gl~~~ie~~ 366 (442)
T TIGR00709 313 TGTEALNYWKD-DNLAQNAQERGERITSFLDDMIKE--HPCIG-------------NVRGRGLMQGIMIV 366 (442)
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCee-------------eeeccceEEEEEEc
Confidence 55554433221 123455666777777777653211 11100 22378999999995
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=152.18 Aligned_cols=253 Identities=11% Similarity=0.122 Sum_probs=157.2
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHH-HHHHh-------
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTH-ALLTH------- 157 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~-~~~~~------- 157 (447)
..++...++.++|+++.. .+.++|++||++|+..|++.... +| .+|+.....||+.. ..+..
T Consensus 84 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~ 163 (429)
T PRK06173 84 FTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGM 163 (429)
T ss_pred cCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhh
Confidence 345666788888888864 46799999999999999975431 23 57999999998842 22110
Q ss_pred ---hcCcccCeeEEEeCCC-----------CHHHHHHhhc--cCCceEEEEEcC-CCCCccccC----HHHHHHHHHhcC
Q 013210 158 ---FFPRACNITTTFVDIS-----------DHEMVNSAIV--QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKG 216 (447)
Q Consensus 158 ---~~~~~~g~~~~~v~~~-----------d~~~l~~~i~--~~~t~lV~i~~~-~NptG~v~~----l~~I~~la~~~g 216 (447)
+.+. . ..+.+++.. +++.|++.++ .+++.+|++|.+ +...|.+.+ +++|.++|++||
T Consensus 164 ~~~~~~~-~-~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g 241 (429)
T PRK06173 164 HGLFNHS-L-PVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYG 241 (429)
T ss_pred hhccccc-C-CCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcC
Confidence 0000 0 012223221 3566777773 257899999996 888887753 889999999999
Q ss_pred CEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHh----hhhhhhcCCCc
Q 013210 217 VTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH----QGALMLLGPTM 284 (447)
Q Consensus 217 i~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~----~~~~~~~g~~~ 284 (447)
+++|+||+++++... -.....|+++ ++|.+++ | ..+ +.++.++++.+.+.... ....+..++++
T Consensus 242 ~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g-G~~p~-~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~ 317 (429)
T PRK06173 242 VLLIFDEIATGFGRTGKLFALEHAGVVPDIMC--IGKALTG-GYLTL-SATITTEAIAQTICSGEAKCFMHGPTFMANPL 317 (429)
T ss_pred CeEEecchhcCCCcCCcchHHHhcCCCCCEEE--eehhhhC-Ccccc-ceEEecHHHHHHHhcCCCCccccCCCCCcCHH
Confidence 999999999655221 1122456666 8999974 5 355 77788888887764311 11111233333
Q ss_pred cHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013210 285 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 364 (447)
Q Consensus 285 ~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~ 364 (447)
...++.+.++.++.. ...++..++.++|.+.|++... +|.+. +..|.|.++.+++.....+..
T Consensus 318 ~~aaa~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~~~~---~~~v~-------------~vRg~Gl~~~iel~~~~~~~~ 380 (429)
T PRK06173 318 ACAIAAESIRLLLES-PWQQNIQRIEAQLKQELAPAAE---FDSVA-------------EVRVLGAIGVVEMKEPVNMAT 380 (429)
T ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhhc---CCCee-------------eeeccceEEEEEeCCcccHHH
Confidence 333333333322211 2356667777888888875411 11111 112678899999985544566
Q ss_pred HHHHhhc
Q 013210 365 LMNYLQN 371 (447)
Q Consensus 365 l~~~l~~ 371 (447)
+.+.|..
T Consensus 381 i~~~l~e 387 (429)
T PRK06173 381 LQPRFVE 387 (429)
T ss_pred HHHHHHH
Confidence 7777765
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=162.83 Aligned_cols=292 Identities=17% Similarity=0.214 Sum_probs=184.7
Q ss_pred chHHHHHHHHHHHhCCCeEEEeC-ChHHHHHHHHHHhc----CCCC----eEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 99 PTVLNLSRQMAALEGTEAAYCTA-SGMSAISSVLMQLC----SSGG----HVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~~~ts-ggt~A~~~al~~l~----~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
....++++.++++.|.+.+.+.+ +|+.|+.++++++. ++|+ .|+++...|++....+. ..|++++.
T Consensus 542 ~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~-----~~G~~vv~ 616 (954)
T PRK05367 542 ELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAV-----MAGMKVVV 616 (954)
T ss_pred HHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHH-----HCCCEEEE
Confidence 45678999999999998876665 56666655554432 4454 59999999988876662 36889998
Q ss_pred eCCC-----CHHHHHHhhcc--CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-C-CC-CCccCCCCeE
Q 013210 170 VDIS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LV-LSPARLGADV 239 (447)
Q Consensus 170 v~~~-----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~-~~-~~~~~~g~di 239 (447)
++.+ |+++|++++.. .++.+|++.+|++-.+...|+++|+++||++|+++++|.++. . +. ..+.++|+|+
T Consensus 617 v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi 696 (954)
T PRK05367 617 VACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADV 696 (954)
T ss_pred ECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCE
Confidence 8764 89999998833 246778888887764345789999999999999999999992 2 22 3466789999
Q ss_pred EEeCCCcccc------CCCCeeEEEEEcChHHHHHHHHHhhhh-hh--hcCCCc-cHH-------HHHHHH--ccCCcHH
Q 013210 240 VVHSISKFIS------GGADIIAGAVCGPANLVNSMMDLHQGA-LM--LLGPTM-NPK-------VAFELS--ERIPHLG 300 (447)
Q Consensus 240 ~~~S~sK~~g------~~g~~igG~l~~~~~~~~~l~~~~~~~-~~--~~g~~~-~~~-------~a~~~~--~~~~~l~ 300 (447)
++.|+||+|+ +|| + |+++.++.+...+-....+. .. ..|... +.. .++..+ .+.+.+.
T Consensus 697 ~~~s~HK~f~~P~G~GGPg--~-G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr 773 (954)
T PRK05367 697 SHLNLHKTFCIPHGGGGPG--V-GPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLR 773 (954)
T ss_pred EEecCcccCCCCcCCCCCc--e-EEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 9999999964 344 3 78877655443332211000 00 011111 111 122222 2334455
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-eCC--HHHHHHHHHHhhccccccc
Q 013210 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-MET--EEKANRLMNYLQNYAQFGF 377 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~-l~~--~~~~~~l~~~l~~~~~~g~ 377 (447)
+..+....+++++.+.|++. +++.+++-.... -...++.+. ++. ...+..+.++|.. +|+
T Consensus 774 ~~a~~~~~~A~Yl~~~L~~~-~~~~~~~~~~~~-------------~~e~i~~~~~~~~~~g~~~~di~krL~d---~G~ 836 (954)
T PRK05367 774 QATEVAILNANYIAKRLKDH-YPVLYTGANGRV-------------AHECILDLRPLKESTGITVDDIAKRLID---YGF 836 (954)
T ss_pred HHHHHHHHHHHHHHHHHHhh-cCccccCCCCCc-------------ccceEEEeecccccCCCCHHHHHHHHHH---CCC
Confidence 56666678999999999763 344333211000 012355552 331 1235678888865 443
Q ss_pred ccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 378 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 378 ~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
.+.... .| + .+.+||++. ..++.++++.|.+++..+.+
T Consensus 837 ~~~t~~-------~p-----------------v-~~~l~i~pt-E~~s~~elDr~~~al~~i~~ 874 (954)
T PRK05367 837 HAPTMS-------FP-----------------V-AGTLMVEPT-ESESKAELDRFCDAMIAIRA 874 (954)
T ss_pred eEeecC-------Cc-----------------c-CCEEEEEee-ecCCHHHHHHHHHHHHHHHH
Confidence 221100 01 1 477999999 88888889999988877653
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-14 Score=148.69 Aligned_cols=204 Identities=15% Similarity=0.127 Sum_probs=135.3
Q ss_pred EEEeCChHHHHHHHHHHhcC--------------------------CCCeEEEeCCCchhHHHHHHhhcCcccCe---eE
Q 013210 117 AYCTASGMSAISSVLMQLCS--------------------------SGGHVVAARTLYGGTHALLTHFFPRACNI---TT 167 (447)
Q Consensus 117 ~~~tsggt~A~~~al~~l~~--------------------------~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~---~~ 167 (447)
.+||+|||+||..++..... ++..|++++.+|.++...+. . .|+ ++
T Consensus 162 G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~-~----lglg~~~v 236 (522)
T TIGR03799 162 GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAAD-V----LGIGRDNL 236 (522)
T ss_pred eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHH-H----cCCCcccE
Confidence 68999999999998865321 12468899999999887763 2 333 56
Q ss_pred EEeCCC-----CHHHHHHhhcc---CCceEEEEE--cCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCc----
Q 013210 168 TFVDIS-----DHEMVNSAIVQ---GRTKVLYFE--SISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSP---- 232 (447)
Q Consensus 168 ~~v~~~-----d~~~l~~~i~~---~~t~lV~i~--~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~---- 232 (447)
+.++.+ |+++|+++++. .+++.+++. ..++.+|.+.|+++|+++|+++|+++|+|++|++.. ..+
T Consensus 237 ~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~ 316 (522)
T TIGR03799 237 IAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRH 316 (522)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHH
Confidence 666654 89999998831 455555554 557799999999999999999999999999995432 222
Q ss_pred --cCC-CCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhh-----hh-----hhhcCCCcc-HHHHHHHHccC-
Q 013210 233 --ARL-GADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQ-----GA-----LMLLGPTMN-PKVAFELSERI- 296 (447)
Q Consensus 233 --~~~-g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~-----~~-----~~~~g~~~~-~~~a~~~~~~~- 296 (447)
..+ ++|.++.|.||++++|-. + |+++. +++..+.+..... +. ....++... ....+..++.+
T Consensus 317 ~l~gle~aDSit~d~HK~l~~P~g-~-G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG 394 (522)
T TIGR03799 317 LLKGIERADSVTIDAHKQLYVPMG-A-GMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIG 394 (522)
T ss_pred HhcCchhCCEEEEChhhcCCcCcc-c-EEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHh
Confidence 223 689999999996655543 3 66654 5555554432100 00 011122222 22234444433
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCC
Q 013210 297 -PHLGLRMKEHCHRALIFARRMKKLGL-KVLYP 327 (447)
Q Consensus 297 -~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p 327 (447)
..+...+++..++++++.+.|++.+. ++..|
T Consensus 395 ~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~ 427 (522)
T TIGR03799 395 RKGYELLIDQSIEKAKYFADLIQQQPDFELVTE 427 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecC
Confidence 34667778889999999999988754 66554
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-14 Score=146.30 Aligned_cols=290 Identities=14% Similarity=0.148 Sum_probs=177.4
Q ss_pred CCchHHHHHH----HHHHHhCCCe---------EEEeCChHHHHHHHHHHhcCC-----C-----C-eEEEeCCCchhHH
Q 013210 97 FNPTVLNLSR----QMAALEGTEA---------AYCTASGMSAISSVLMQLCSS-----G-----G-HVVAARTLYGGTH 152 (447)
Q Consensus 97 ~~~~~~~l~~----~ia~l~g~~~---------~~~tsggt~A~~~al~~l~~~-----g-----d-~Vi~~~~~y~~~~ 152 (447)
..|...++|+ .+++++|.++ .+||+|||+|+..++.+.... | + .|.+++..|.++.
T Consensus 164 ~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~ 243 (539)
T PLN02590 164 TSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFR 243 (539)
T ss_pred cCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHH
Confidence 3444445554 4566666542 689999999999888654220 1 2 4556788888887
Q ss_pred HHHHhhcCcccCe---eEEEeCCC-------CHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHHHHhcCC
Q 013210 153 ALLTHFFPRACNI---TTTFVDIS-------DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAHDKGV 217 (447)
Q Consensus 153 ~~~~~~~~~~~g~---~~~~v~~~-------d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi 217 (447)
..+. + .|+ .++.|+.+ |+++|+++|++. .+-+|+.+..+..+|.+-|+++|+++|++||+
T Consensus 244 KAa~-i----lGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~ 318 (539)
T PLN02590 244 KACL-I----GGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGI 318 (539)
T ss_pred HHHH-H----cCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCC
Confidence 7763 2 333 34444443 889999988321 24466667778889999999999999999999
Q ss_pred EEEEeCCCCCCC-CCcc------CC-CCeEEEeCCCccccCCCCeeEEEEEc-ChH-HHHHHHH---Hh-hh--------
Q 013210 218 TVVVDNTFSPLV-LSPA------RL-GADVVVHSISKFISGGADIIAGAVCG-PAN-LVNSMMD---LH-QG-------- 275 (447)
Q Consensus 218 ~livD~~~~~~~-~~~~------~~-g~di~~~S~sK~~g~~g~~igG~l~~-~~~-~~~~l~~---~~-~~-------- 275 (447)
++|||++|++.. ..+. .+ .+|-++.++||++..|-. . |++.. ++. +.+.+.. +. ..
T Consensus 319 WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~-c-g~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~ 396 (539)
T PLN02590 319 WLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQT-C-SPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVV 396 (539)
T ss_pred eEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcC-E-EEEEecCHHHHHHHhhcCHHHhCCcccccccCC
Confidence 999999995543 3221 11 479999999999997765 3 55544 432 2232211 11 00
Q ss_pred ----hhhhcCCCccHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCc
Q 013210 276 ----ALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGF 348 (447)
Q Consensus 276 ----~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~ 348 (447)
.....+-.......|..++. .+.+.+.+++..++++++.+.|++.+. ++..|. .
T Consensus 397 d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~--~----------------- 457 (539)
T PLN02590 397 NYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTR--Y----------------- 457 (539)
T ss_pred CccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--c-----------------
Confidence 00111112233444554443 355778889999999999999988754 665442 1
Q ss_pred CcEEEEEeCC----HH----HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013210 349 GGLLCLDMET----EE----KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420 (447)
Q Consensus 349 g~~~~~~l~~----~~----~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g 420 (447)
-++++|.+.. .+ ...++.+++...+ .+.++ ++.. -..-.+|++++
T Consensus 458 l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G---~~~vs----------~t~~--------------~g~~~lR~~i~ 510 (539)
T PLN02590 458 FSLVCFRLAPVDGDEDQCNERNRELLAAVNSTG---KIFIS----------HTAL--------------SGKFVLRFAVG 510 (539)
T ss_pred eEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCC---CEEEE----------eeEE--------------CCEEEEEEEec
Confidence 1288888752 11 1234555554321 11111 1110 01247999998
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 013210 421 YLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 421 ~~~~~~~~i~~l~~al~~~ 439 (447)
-..++++.++.+.+.|.+.
T Consensus 511 n~~T~~~dv~~~~~~i~~~ 529 (539)
T PLN02590 511 APLTEEKHVTEAWQIIQKH 529 (539)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4566677777766666554
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-15 Score=150.77 Aligned_cols=253 Identities=16% Similarity=0.176 Sum_probs=158.2
Q ss_pred CCCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhc-------CC-CCeEEEeCCCchhHHHHHHh--------
Q 013210 96 HFNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLC-------SS-GGHVVAARTLYGGTHALLTH-------- 157 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~-------~~-gd~Vi~~~~~y~~~~~~~~~-------- 157 (447)
..++...++.++|+++.+. +.++|++||++|+..|++... .+ ..+||.....||+.......
T Consensus 94 ~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~ 173 (453)
T PRK06943 94 CTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFK 173 (453)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhh
Confidence 3456667888888888764 479999999999999998652 12 35799999999886522210
Q ss_pred --hcCcccCeeEEEeCCC-----------------CHHHHHHhhc--cCCceEEEEEc-CCCCCccccC----HHHHHHH
Q 013210 158 --FFPRACNITTTFVDIS-----------------DHEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRL 211 (447)
Q Consensus 158 --~~~~~~g~~~~~v~~~-----------------d~~~l~~~i~--~~~t~lV~i~~-~~NptG~v~~----l~~I~~l 211 (447)
+.+...+ +.+++.. +++++++.+. .+++.+|++|. ++...|.+.+ +++|.++
T Consensus 174 ~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~l 251 (453)
T PRK06943 174 DAYDPLIRH--AHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRAL 251 (453)
T ss_pred cccccCCCC--CEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHH
Confidence 0110001 1222211 2467777773 25789999999 4888888764 8899999
Q ss_pred HHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHh-----hhhhh
Q 013210 212 AHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH-----QGALM 278 (447)
Q Consensus 212 a~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~-----~~~~~ 278 (447)
|++||+++|+||+++++... -.....|+++ ++|.+++ | .++ |++++++++.+.+.... ....+
T Consensus 252 c~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt--~gKgl~g-G~~Pi-~av~~~~ei~~~~~~~~~~~~~~~~~T 327 (453)
T PRK06943 252 CDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLC--LSKGISG-GYLPL-SLVLSRDAIFAAFYDDDVTRGFLHSHS 327 (453)
T ss_pred HHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEe--eehhhcc-Ccccc-eEEEEcHHHHHhhcccCccCCccCCCC
Confidence 99999999999999666321 1122456766 7999995 5 477 77888888887765211 11223
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME- 357 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~- 357 (447)
..|+.++..++.+.+..++. ....++..+..++|.+.|+++. + +|.+. +..|.|.++.+++.
T Consensus 328 ~~gnpl~~aaa~a~L~~i~~-~~l~~~~~~~G~~l~~~L~~l~-~--~~~v~-------------~vrG~Gl~~gvel~~ 390 (453)
T PRK06943 328 YTGNPLACRAALATLDLFAE-DDVLARNARKSARLRAALAPLA-A--HPQVR-------------HLRQRGTIFAFDVAL 390 (453)
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHh-c--CCCEE-------------eEeccccEEEEEEcc
Confidence 44555544444444433321 1234556666777777776642 1 22221 12378899999996
Q ss_pred CH----HHHHHHHHHhhc
Q 013210 358 TE----EKANRLMNYLQN 371 (447)
Q Consensus 358 ~~----~~~~~l~~~l~~ 371 (447)
+. .....+...+..
T Consensus 391 ~~~~~~~~~~~i~~~~~~ 408 (453)
T PRK06943 391 DGDAARTFSRRFFEAALE 408 (453)
T ss_pred CCCcchHHHHHHHHHHHH
Confidence 21 123455555554
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-15 Score=158.64 Aligned_cols=275 Identities=19% Similarity=0.167 Sum_probs=184.5
Q ss_pred hHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh-cCCC--CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCC
Q 013210 100 TVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQL-CSSG--GHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l-~~~g--d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d 174 (447)
.+.+++..||++.|.+ ++-++.++|++.+++++++ +++| ++|++++.+|+++...++..... .|++++.++.++
T Consensus 149 al~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~-~GieV~~v~~~~ 227 (993)
T PLN02414 149 SLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADG-LGLEVVVADEKD 227 (993)
T ss_pred HHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhh-cCCEEEEecchh
Confidence 3578889999999985 4999999999999888776 3444 78999999999999998666555 799999987644
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCC-CccCCCCeEEEeCCCccc---
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVL-SPARLGADVVVHSISKFI--- 248 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~-~~~~~g~di~~~S~sK~~--- 248 (447)
.+ .. .+.+..+++..| |.+|.+.|+++|+++||++|+++++ .++ +-..+ +|.++|+|+++++.+||.
T Consensus 228 ~~----~~-~~~v~~vlvq~P-~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~ 300 (993)
T PLN02414 228 FD----YS-SGDVCGVLVQYP-ATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPM 300 (993)
T ss_pred hc----cc-cCceEEEEEecC-CCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCC
Confidence 22 12 334545554444 4699999999999999999999999 554 22333 578899999999999998
Q ss_pred --cCCCCeeEEEEEcChHHHHHHHH-H-------------------hhhhhhh-cCCC-c-cHHH--HHH-----HHccC
Q 013210 249 --SGGADIIAGAVCGPANLVNSMMD-L-------------------HQGALML-LGPT-M-NPKV--AFE-----LSERI 296 (447)
Q Consensus 249 --g~~g~~igG~l~~~~~~~~~l~~-~-------------------~~~~~~~-~g~~-~-~~~~--a~~-----~~~~~ 296 (447)
|||. . |+++.++++...+-. + +.+..++ .+++ . +.++ +.+ ...+-
T Consensus 301 G~GGP~--a-Gflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~ 377 (993)
T PLN02414 301 GYGGPH--A-AFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP 377 (993)
T ss_pred CCCCCC--e-eEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhcc
Confidence 4443 3 999988877553311 0 0000000 1111 1 0111 111 11111
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013210 297 PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 376 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g 376 (447)
..+.+..++..+++.++++.|++.|.++..+. ....+.|.++.. ..+.++|...+
T Consensus 378 ~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~-------------------~f~~vt~~~~~~---~~v~~~L~~~g--- 432 (993)
T PLN02414 378 EGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLP-------------------FFDTVKVKCSDA---DAIADAAAKVG--- 432 (993)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccCCCC-------------------CcCeEEEecCCH---HHHHHHHHHCC---
Confidence 33445556678888999999987776554331 122788887632 56667776532
Q ss_pred cccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 377 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 377 ~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
| .++. +.++.||+|+. ..+++++|+.|.++|...
T Consensus 433 -I--~l~~-------------------------~~~~~lrvs~~-e~~T~edId~L~~~l~~~ 466 (993)
T PLN02414 433 -I--NLRV-------------------------VDANTVTVSFD-ETTTLEDVDKLFKVFAGG 466 (993)
T ss_pred -C--eeEE-------------------------ecCCeEEEEee-ccCCHHHHHHHHHHHccc
Confidence 2 2220 11356999999 999999999999999643
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-15 Score=145.70 Aligned_cols=299 Identities=14% Similarity=0.191 Sum_probs=182.6
Q ss_pred cccCCCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc-------CCC-CeEEEeCCCchhHHHH-HH---
Q 013210 92 IYSRHFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLC-------SSG-GHVVAARTLYGGTHAL-LT--- 156 (447)
Q Consensus 92 ~~~r~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~-------~~g-d~Vi~~~~~y~~~~~~-~~--- 156 (447)
.++-...| ..+|.++|+++.+ -+.++|++||++|+..+++... ++. .++|.-...||+..-. +.
T Consensus 81 ~~~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g 159 (449)
T COG0161 81 FGGFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGG 159 (449)
T ss_pred hcccCCch-HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccC
Confidence 34445566 6889999999987 4679999999999999997543 122 3588888888764321 10
Q ss_pred ------hhcCcccCeeEEEeCCC-----------------CHHHHHHhhcc---CCceEEEEEcCCCC-CccccC----H
Q 013210 157 ------HFFPRACNITTTFVDIS-----------------DHEMVNSAIVQ---GRTKVLYFESISNP-TLAVAN----I 205 (447)
Q Consensus 157 ------~~~~~~~g~~~~~v~~~-----------------d~~~l~~~i~~---~~t~lV~i~~~~Np-tG~v~~----l 205 (447)
.+... .-..+.+++.. ..++|++.|.. +++.++++|.+..- .|.+.| +
T Consensus 160 ~~~~~~~~~~~-ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl 238 (449)
T COG0161 160 PVALRHAFYDP-LLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYL 238 (449)
T ss_pred chhhhhhhccc-cccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHH
Confidence 11100 00111122111 14566666643 56789999998877 777764 8
Q ss_pred HHHHHHHHhcCCEEEEeCCCCCCCC-----CccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhh
Q 013210 206 PELSRLAHDKGVTVVVDNTFSPLVL-----SPARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 278 (447)
Q Consensus 206 ~~I~~la~~~gi~livD~~~~~~~~-----~~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~ 278 (447)
+++.++|++|||++|+||+.++|.. .....| .|+++ ++|.+.+.-.++ |+++.++++.+.+.... ...+
T Consensus 239 ~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~--~aKGLT~GY~Pl-~a~l~~~~I~~~~~~~~-~~~f 314 (449)
T COG0161 239 KRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILC--LAKGLTGGYLPL-SAVLTSDRIYEAFSDGD-AGAF 314 (449)
T ss_pred HHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeee--ecccccccchhh-HhHhhhHHHHHHHhccc-CCee
Confidence 8999999999999999999866642 222334 46666 889999777777 77777888888876531 1112
Q ss_pred hcCCCc--cHHHHHHHHccCCcHH--HHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 279 LLGPTM--NPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 279 ~~g~~~--~~~~a~~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|.+. .+.+++.++..++-+. ..+++..+...+|.+.|++. ... |... +..|.|.+..
T Consensus 315 ~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~---p~Vg-------------dVR~~Gli~~ 378 (449)
T COG0161 315 MHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADH---PLVG-------------DVRGLGLIGA 378 (449)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccC---CcEE-------------EeeccceEEE
Confidence 223221 2334444333333222 23455567777777787762 110 1111 2336888999
Q ss_pred EEeCCHH---------HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013210 354 LDMETEE---------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 424 (447)
Q Consensus 354 ~~l~~~~---------~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~ 424 (447)
+++.... ...++...+.. .|++.-.+|.. -.+.+|.+.+ .++
T Consensus 379 iElv~d~~t~~~f~~~~~~~~~~~~~e---~Gl~iRp~g~~-i~~~PPliit-------------------------~~e 429 (449)
T COG0161 379 IELVADKATKTPFEARVGARVRAAALE---RGLLIRPLGDV-IYLMPPLIIT-------------------------REE 429 (449)
T ss_pred EEEecccccccchhhhHHHHHHHHHHH---CCeEEeecCCE-EEEcCCccCC-------------------------HHH
Confidence 9986222 14455555544 45555455532 2334454443 678
Q ss_pred HHHHHHHHHHHHHHhhh
Q 013210 425 LDQRWSQFEKALSRMQD 441 (447)
Q Consensus 425 ~~~~i~~l~~al~~~~~ 441 (447)
++++++.+.++|+....
T Consensus 430 id~l~~~l~~al~~~~~ 446 (449)
T COG0161 430 IDELVDALREALDETLA 446 (449)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88889999988887643
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-15 Score=138.58 Aligned_cols=254 Identities=17% Similarity=0.192 Sum_probs=173.2
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc------C--C-CC-eEEEeCCCchhH-H---------HHHHh
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC------S--S-GG-HVVAARTLYGGT-H---------ALLTH 157 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~------~--~-gd-~Vi~~~~~y~~~-~---------~~~~~ 157 (447)
+...-++++.+++++|.+.++-+++|.||+..++.... + | .. .|+.....|++- . ..+..
T Consensus 100 nd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~ 179 (427)
T KOG1402|consen 100 NDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDG 179 (427)
T ss_pred hhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhc
Confidence 44557899999999999999999999999999987543 1 2 22 344444445432 1 12233
Q ss_pred hcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013210 158 FFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-- 231 (447)
Q Consensus 158 ~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-- 231 (447)
+.+-.-| .+..++..|.++|+.++++++.+.+++|.++.+.|.+.| ++++.++|.+|++++|.||+|+++...
T Consensus 180 fgp~~P~-~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk 258 (427)
T KOG1402|consen 180 FGPFLPG-VVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK 258 (427)
T ss_pred cCCCCCC-cceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc
Confidence 4433122 366778889999999998889999999999999999976 899999999999999999999766432
Q ss_pred -----ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHH
Q 013210 232 -----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH 306 (447)
Q Consensus 232 -----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~ 306 (447)
-.....|+++ +.|.++|.-.++ .++.++++++..+....+ +.+..|+++....+.+++.-+.+ ....++-
T Consensus 259 ~la~d~env~PDivi--lgKalSGG~~Pv-savl~~~~im~~~~pgeH-gsTyggNpLg~~vaiAalevi~e-ekL~era 333 (427)
T KOG1402|consen 259 LLACDYENVRPDIVI--LGKALSGGVYPV-SAVLADDDIMLNIKPGEH-GSTYGGNPLGCAVAIAALEVIVE-EKLVERA 333 (427)
T ss_pred EEEeehhhcCCCeEE--EeccccCCeeee-EEEEecHHHHhccCCCcc-ccccCCChHHHHHHHHHHHHHHH-HHHHHHH
Confidence 2233578888 889999776677 666778888877766554 44466676666666555443321 2233445
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 371 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~l~~~l~~ 371 (447)
..+...|+..|++++.++ |.. .....|.|.+..+.+. +..++-.++-.+++
T Consensus 334 ~~lG~~l~~~L~~l~~~~--p~~------------v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~ 388 (427)
T KOG1402|consen 334 AKLGEILRDQLNKLQKKF--PHV------------VKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKE 388 (427)
T ss_pred HHHHHHHHHHHHhccccc--cch------------hheeeccceEEEEEeccccccchhHHHHHHcccc
Confidence 566667777787765432 111 1123377888888886 22334555555554
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-15 Score=156.10 Aligned_cols=296 Identities=18% Similarity=0.183 Sum_probs=182.2
Q ss_pred chHHHHHHHHHHHhCCCeEEEeC-ChHHHHHHHHHHhcC-------C-CCeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 99 PTVLNLSRQMAALEGTEAAYCTA-SGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~~~ts-ggt~A~~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
..+.++++.++++.|.+.+-+.+ +|+.+..++++++.. + .++|+++...|+.....+. ..|++++.
T Consensus 543 q~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~-----~~GieVv~ 617 (954)
T PRK12566 543 AMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQ-----MAGMRVVI 617 (954)
T ss_pred HHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHH-----HCCCEEEE
Confidence 45688999999999999887766 788888777776532 2 3578888988876655442 26899998
Q ss_pred eCCC-----CHHHHHHhhc--cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCC-ccCCCCeE
Q 013210 170 VDIS-----DHEMVNSAIV--QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLS-PARLGADV 239 (447)
Q Consensus 170 v~~~-----d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~-~~~~g~di 239 (447)
++.+ |+++|++.+. ++++++|.+.+|++-.+...|+++|+++||++|+++++|.++ +...+. |.++|+|+
T Consensus 618 Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi 697 (954)
T PRK12566 618 VECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADV 697 (954)
T ss_pred eccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCE
Confidence 8874 8999999983 267888888888877766678999999999999999999998 344444 67899999
Q ss_pred EEeCCCccccCCCC---eeEEEEEcChHHHHHHHHHh----hhhhhhcCCC-----cc---HHHHHHHHccCCc-HHHHH
Q 013210 240 VVHSISKFISGGAD---IIAGAVCGPANLVNSMMDLH----QGALMLLGPT-----MN---PKVAFELSERIPH-LGLRM 303 (447)
Q Consensus 240 ~~~S~sK~~g~~g~---~igG~l~~~~~~~~~l~~~~----~~~~~~~g~~-----~~---~~~a~~~~~~~~~-l~~~~ 303 (447)
+++++||++++|-. .-.|.+..++.+...+.... .+.....|.. .+ ...++..+..+-. +.+..
T Consensus 698 ~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~eLk~aa 777 (954)
T PRK12566 698 SHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQLADAS 777 (954)
T ss_pred EEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHHHHHHH
Confidence 99999999974311 11134344443333333221 0000001111 11 1122222222211 22222
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCCCCc-hhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccc
Q 013210 304 KEHCHRALIFARRMKKLGLKVLYPGLEDHP-HHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAV 380 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p-~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~v 380 (447)
..-..+++++++.|.+ +..+.+.+... + -| -..+..+.++. ......+.++|.. +|+.+.
T Consensus 778 ~~ailnAnYla~rL~~-~~~v~~~~~~~-~~~h------------Efii~~~~l~~~~g~~~~dvakRL~d---~Gihap 840 (954)
T PRK12566 778 EVAILSANYLANQLGG-AFPVLYRGRNE-RVAH------------ECILDLRPLKAQTGISEEDVAKRLMD---YGFHAP 840 (954)
T ss_pred HHHHHHHHHHHHHhHh-hCCCCcCCCCC-Ceee------------EEEEEccccccccCCCHHHHHHHHHH---CCcEEe
Confidence 2236688899999976 33333321000 0 00 01122222331 1224667777775 443221
Q ss_pred cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 381 s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
- +..| ..+.+||++. ..+..+++|.|.++|..+.++
T Consensus 841 t-------~~fP------------------v~~~LmIepT-E~eskeEIDrf~eAL~~I~~e 876 (954)
T PRK12566 841 T-------MSFP------------------VPGTLMVEPT-ESESKAELDRFVEAMLSIRAE 876 (954)
T ss_pred E-------Eeec------------------cCCEEEEEee-eeCCHHHHHHHHHHHHHHHHH
Confidence 0 0111 1478999999 888899999999988877543
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6e-15 Score=162.27 Aligned_cols=257 Identities=15% Similarity=0.146 Sum_probs=155.2
Q ss_pred CCCCchHHHHHHHHHHHh--CCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhh---c---CcccC
Q 013210 95 RHFNPTVLNLSRQMAALE--GTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF---F---PRACN 164 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~--g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~---~---~~~~g 164 (447)
+...+...++.++|+++. +.+.++|++||+||+..|++... ...++||+....||+........ . +...+
T Consensus 620 ~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~ 699 (972)
T PRK06149 620 RFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALE 699 (972)
T ss_pred cccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccC
Confidence 345567788999999987 45789999999999999998432 22357888888888754221000 0 00000
Q ss_pred ---eeEEEeC--------C--CC-----HHHHHHhhc-----cCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCC
Q 013210 165 ---ITTTFVD--------I--SD-----HEMVNSAIV-----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV 217 (447)
Q Consensus 165 ---~~~~~v~--------~--~d-----~~~l~~~i~-----~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi 217 (447)
-.+..++ . ++ .+++++.++ .+++.+|++|.+....|.+.+ +++|.++|++||+
T Consensus 700 ~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~ 779 (972)
T PRK06149 700 TRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGG 779 (972)
T ss_pred CCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCC
Confidence 0011111 1 11 234433331 246889999999999999887 9999999999999
Q ss_pred EEEEeCCCCCCCCC------c--cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHH
Q 013210 218 TVVVDNTFSPLVLS------P--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 289 (447)
Q Consensus 218 ~livD~~~~~~~~~------~--~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a 289 (447)
++|+||+++++..- . .....|++ +++|.+|+ |..+ |++++++++.+.+........+..|++++..++
T Consensus 780 llI~DEV~tGfGRtG~~~~a~e~~gv~PDiv--t~gK~lg~-G~Pl-~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaa 855 (972)
T PRK06149 780 VCIADEVQVGYGRLGHYFWGFEQQGVVPDII--TMAKGMGN-GHPL-GAVITRREIAEALEAEGYFFSSTGGSPVSCRIG 855 (972)
T ss_pred EEEEEeehhcCCccCccchhhhhcCCCCCEE--EecccccC-Ceee-EEEEEcHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 99999999655321 1 12235666 58999994 5777 888889998887753111111233444444444
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--------HHH
Q 013210 290 FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--------EEK 361 (447)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--------~~~ 361 (447)
.+.+..++. ....++..+..++|.+.|++...+ +|-.. ...|.|.++.++|.. .+.
T Consensus 856 la~L~~i~~-e~l~~~~~~~G~~l~~~L~~l~~~--~~~i~-------------~vrG~Gl~~gvel~~~~~~~~~~~~~ 919 (972)
T PRK06149 856 MAVLDVLRE-EKLQENARRVGDHLKARLEALADR--HPLIG-------------AVHGMGLYLGVELVRDRQTLEPATEE 919 (972)
T ss_pred HHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCeE-------------EEeecceEEEEEEecCcccCCCChHH
Confidence 444333321 113344555556676776653111 11100 223788999999841 223
Q ss_pred HHHHHHHhhc
Q 013210 362 ANRLMNYLQN 371 (447)
Q Consensus 362 ~~~l~~~l~~ 371 (447)
+..+.+.+..
T Consensus 920 ~~~i~~~l~~ 929 (972)
T PRK06149 920 TAAICDRLLE 929 (972)
T ss_pred HHHHHHHHHh
Confidence 4566777665
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=164.31 Aligned_cols=295 Identities=16% Similarity=0.135 Sum_probs=178.2
Q ss_pred CCCCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcC-C-CCeEEEeCCCchhHHHHHHhhc----Cccc--C
Q 013210 95 RHFNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCS-S-GGHVVAARTLYGGTHALLTHFF----PRAC--N 164 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~-~-gd~Vi~~~~~y~~~~~~~~~~~----~~~~--g 164 (447)
++.++...++.++|+++... +.++|++||+||+..|++.... . .++||+....||+........- .... +
T Consensus 659 ~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~ 738 (1013)
T PRK06148 659 RYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKG 738 (1013)
T ss_pred CcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCC
Confidence 44567777888888888753 6799999999999999986432 2 3579999998888653221100 0000 1
Q ss_pred --eeEEE--------eCCC--C-------HHHHHHhhc-----cCCceEEEEEcCCCCCccccC----HHHHHHHHHhcC
Q 013210 165 --ITTTF--------VDIS--D-------HEMVNSAIV-----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKG 216 (447)
Q Consensus 165 --~~~~~--------v~~~--d-------~~~l~~~i~-----~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~g 216 (447)
..+.. .+.. + .+.+++.++ .+++.+|++|.+....|.+.+ +++|.++|++||
T Consensus 739 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g 818 (1013)
T PRK06148 739 RPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAG 818 (1013)
T ss_pred CCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhC
Confidence 01111 1111 1 134554442 146899999999998898876 899999999999
Q ss_pred CEEEEeCCCCCCCCC------ccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHH
Q 013210 217 VTVVVDNTFSPLVLS------PARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 288 (447)
Q Consensus 217 i~livD~~~~~~~~~------~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~ 288 (447)
+++|+||+++++... ...+| .|+++ ++|.+|+ |.++ |++++++++++.+........+..|++++..+
T Consensus 819 ~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK~lgg-G~Pl-gav~~~~ei~~~~~~g~~~~~Tf~gnpla~aa 894 (1013)
T PRK06148 819 GVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGKPIGN-GHPM-GAVVTTREIADSFDNGMEYFNTFGGNPVSCAI 894 (1013)
T ss_pred CEEEEEecccCCCCCCCcchhhhhcCCCcceee--ecccccC-Ccce-EEEEEcHHHHhhccCCCccccCCCCCHHHHHH
Confidence 999999999665311 11234 56655 8999995 6888 88888899887765321112334555555555
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--------HH
Q 013210 289 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--------EE 360 (447)
Q Consensus 289 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--------~~ 360 (447)
+.+.+..++. ....++..+..++|.+.|+++..+....+ +..|.|.++.+++.. .+
T Consensus 895 a~a~L~~i~~-e~l~~~~~~~G~~l~~~L~~l~~~~~~i~---------------~VrG~Gl~~gvel~~~~~~~~~~~~ 958 (1013)
T PRK06148 895 GLAVLDIIED-EDLQRNALEIGNYLLAGLRELQDRFDIIG---------------DVRGMGLFLGIELVTDRKTKAPATA 958 (1013)
T ss_pred HHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhCCCce---------------EEeeeceEEEEEecCCccccCccHH
Confidence 5444443322 12345556666677777765311110011 223788899999852 12
Q ss_pred HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 361 ~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+..+++.+.. .|++....| ...+.|||.+. ...+++.++.+.++|++.
T Consensus 959 ~~~~i~~~~~~---~Gvl~~~~g--------------------------~~~~vlr~~Pp-l~it~~~id~~l~~l~~~ 1007 (1013)
T PRK06148 959 IARYVKNGARE---RGILIGTEG--------------------------PHDNVLKIRPP-LIFSRADADHLLEVLDDV 1007 (1013)
T ss_pred HHHHHHHHHHh---CCeEEeccC--------------------------CCCCEEEEeCC-ccCCHHHHHHHHHHHHHH
Confidence 34556666665 233221111 12467888888 655555565555555443
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=145.86 Aligned_cols=282 Identities=18% Similarity=0.225 Sum_probs=161.3
Q ss_pred ccccccccccCCH-HHHHHhhcCCCCCCCCCccccCCC--CchH----HHHHHHHHHHhCCC----eE-EEeCChHHHHH
Q 013210 61 SIEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHF--NPTV----LNLSRQMAALEGTE----AA-YCTASGMSAIS 128 (447)
Q Consensus 61 pi~~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~--~~~~----~~l~~~ia~l~g~~----~~-~~tsggt~A~~ 128 (447)
++.+|..++.|.+ +.+-..+..+|. .+|.-.|+. ...+ ..+.+++.++++++ .+ +=.-||+.|+.
T Consensus 24 ~LiaSEN~~Sp~v~~al~S~l~nkya---eg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~ 100 (399)
T PF00464_consen 24 NLIASENYMSPAVREALGSDLTNKYA---EGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANL 100 (399)
T ss_dssp E-CTT-----HHHHHHHTSGGGGS-T---TEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHH
T ss_pred cccCcccccCHHHHHHhCCcceeecc---ccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHH
Confidence 4566677776665 443344444431 112111221 2222 33566777889998 54 34569999999
Q ss_pred HHHHHhcCCCCeEEEeCCCchhHHHHHH--hh--cC-cccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCC
Q 013210 129 SVLMQLCSSGGHVVAARTLYGGTHALLT--HF--FP-RACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 129 ~al~~l~~~gd~Vi~~~~~y~~~~~~~~--~~--~~-~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
+++.+|+++||+|+..+..+++....-. .. .. .....++..++.+ |.+++++.++..++++|++...+.
T Consensus 101 av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y 180 (399)
T PF00464_consen 101 AVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSY 180 (399)
T ss_dssp HHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SST
T ss_pred HHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhc
Confidence 9999999999999999988766532110 00 00 0012233333332 899999988667899999866554
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC------CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcC---------
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF------SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP--------- 262 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~------~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~--------- 262 (447)
| ...|++++.++|++.|+++++|.+| ++...+|... +|++++|.||.+.||- ||+++.+
T Consensus 181 ~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-ADvvt~sThKtl~GPr---ggiI~~~~~~~~~~~~ 254 (399)
T PF00464_consen 181 P--RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-ADVVTGSTHKTLRGPR---GGIILTNKGSKNVDKK 254 (399)
T ss_dssp S--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-SSEEEEESSGGG-SSS----EEEEES-SEEEE-TT
T ss_pred c--CccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-ceEEEeeccccccccC---ceEEEEcCCccccCCc
Confidence 3 5679999999999999999999998 3344578876 9999999999998774 5888877
Q ss_pred -----hHHHHHHHHHhhhhhhhcCCCccHHHHHHH--HccCC-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCch
Q 013210 263 -----ANLVNSMMDLHQGALMLLGPTMNPKVAFEL--SERIP-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPH 334 (447)
Q Consensus 263 -----~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~--~~~~~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~ 334 (447)
+++.+++...-... ...+..+...+|.+. ...+. .+.+..++..++++.|++.|.+.|+++..-+-.
T Consensus 255 ~~~~~~~l~~~I~~avfP~-~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd---- 329 (399)
T PF00464_consen 255 GKEIDEELAEKIDSAVFPG-LQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFKVVTGGTD---- 329 (399)
T ss_dssp S-EEEHHHHHHHHHHHTTT-T-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-S----
T ss_pred ccccHHHHHHHhccccCCC-cccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcEEEECCCC----
Confidence 77888887543311 123333333333332 22222 356778888999999999999999988753321
Q ss_pred hHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhh
Q 013210 335 HELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQ 370 (447)
Q Consensus 335 ~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~l~~~l~ 370 (447)
..++.+.+. +...++..++++.
T Consensus 330 --------------~H~vlvd~~~~~~~g~~a~~~Le~~g 355 (399)
T PF00464_consen 330 --------------NHQVLVDLRSFGIDGKEAEKALEEAG 355 (399)
T ss_dssp --------------SSEEEEEGGGGTS-HHHHHHHHHHTT
T ss_pred --------------CCeEEEEecccccchHHHHHHHHhcC
Confidence 228888875 2334555555554
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.5e-15 Score=148.19 Aligned_cols=240 Identities=17% Similarity=0.184 Sum_probs=145.8
Q ss_pred CCCchHHHHHHHHHHHhCC-----CeEEEe-CChHHHHHHHHHHhc-CCC-CeEEEeCCCchhHHHHHHhhc----Cc-c
Q 013210 96 HFNPTVLNLSRQMAALEGT-----EAAYCT-ASGMSAISSVLMQLC-SSG-GHVVAARTLYGGTHALLTHFF----PR-A 162 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~-----~~~~~t-sggt~A~~~al~~l~-~~g-d~Vi~~~~~y~~~~~~~~~~~----~~-~ 162 (447)
..++...++.+++.++... +.++|+ +||+||+..|++... .+| ++||.....||+........- .+ .
T Consensus 103 ~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~ 182 (464)
T PRK06938 103 LTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKP 182 (464)
T ss_pred cCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCcccccc
Confidence 4566667787888877542 256665 799999999998543 233 578888888988654331110 00 0
Q ss_pred c-C--eeEEEeCCC-----------------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC----HHHHHHHHH
Q 013210 163 C-N--ITTTFVDIS-----------------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAH 213 (447)
Q Consensus 163 ~-g--~~~~~v~~~-----------------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~----l~~I~~la~ 213 (447)
. + ..+.+++.. +++.+++.+++ +++.+|++|.+....|.+.| +++|.++|+
T Consensus 183 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~ 262 (464)
T PRK06938 183 LGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITE 262 (464)
T ss_pred CCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence 0 0 122333321 25667777732 25899999999988888764 889999999
Q ss_pred hcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccH
Q 013210 214 DKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP 286 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~ 286 (447)
+||+++|+||+++++... -.....|+++ ++|.+|+ |.++ |+++.++++ +.+.... ...+..|++++.
T Consensus 263 ~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gKglgg-G~Pl-sAv~~~~~~-~~~~~~~-~~~T~~gnpla~ 336 (464)
T PRK06938 263 EAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVV--LSKAIGG-SLPL-AVVVYREWL-DTWQPGA-HAGTFRGNQMAM 336 (464)
T ss_pred HcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEE--eeccccC-CCce-EEEeehhHh-hccCCCC-CCCCCCcCHHHH
Confidence 999999999999766321 1222456766 8999985 6888 666666664 4332211 122344555554
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 287 KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 287 ~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
.++.+.+..++. ....++..+..++|.+.|+++..+ +|... +..|.|.++.++|.
T Consensus 337 Aaa~a~L~~l~~-~~l~~~~~~~G~~l~~~L~~l~~~--~~~i~-------------~VrG~Glm~gie~~ 391 (464)
T PRK06938 337 AAGSATLRYIKE-HRLAEHAAAMGERLREHLRQLQRD--YPQLG-------------DVRGRGLMLGVEIV 391 (464)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHh--CCCee-------------eeeccceEEEEEec
Confidence 444444433321 123345555666666666543111 11000 22378889999995
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.7e-15 Score=148.91 Aligned_cols=241 Identities=11% Similarity=0.121 Sum_probs=150.9
Q ss_pred CCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhhcCc-----
Q 013210 97 FNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR----- 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~----- 161 (447)
.++...++.++|+++... +.++|++||+||+..|++.... +| .+|+.....||+........-..
T Consensus 97 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~ 176 (460)
T PRK06916 97 ANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQ 176 (460)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCccccc
Confidence 456667888889888753 5799999999999999985432 33 58999999998865332111000
Q ss_pred ccC---eeEEEeCC-----------------CCHHHHHHhhc--cCCceEEEEEc-CCCCCccccC----HHHHHHHHHh
Q 013210 162 ACN---ITTTFVDI-----------------SDHEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAHD 214 (447)
Q Consensus 162 ~~g---~~~~~v~~-----------------~d~~~l~~~i~--~~~t~lV~i~~-~~NptG~v~~----l~~I~~la~~ 214 (447)
..+ ..+..++. .+++++++.++ .+++.+|++|. ++...|.+.+ +++|.++|++
T Consensus 177 ~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~ 256 (460)
T PRK06916 177 VYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTK 256 (460)
T ss_pred ccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHH
Confidence 000 01122211 03456666663 25789999999 6888887753 8899999999
Q ss_pred cCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHH----h--hhhhhhcC
Q 013210 215 KGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL----H--QGALMLLG 281 (447)
Q Consensus 215 ~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~----~--~~~~~~~g 281 (447)
||+++|+||+++++... ......|+++ ++|.+++.-.++ |++++++++++.+... . ....+..|
T Consensus 257 ~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~--~gK~l~gG~~Pi-~av~~~~ei~~~~~~~~~~~~~~~~~~T~~g 333 (460)
T PRK06916 257 YNVLFITDEVATGFGRTGKMFACEHENVTPDIMT--AGKGLTGGYLPI-AITVTTDEIYNAFYGDYEEQKTFFHGHSYTG 333 (460)
T ss_pred cCCEEEeechhhCCCcCchhhHHHhcCCCCCeee--eehhhhcCcccc-ceeeecHHHHHHhhccccccCccccCCCCCC
Confidence 99999999999665211 1222467665 899998532467 8888888888766421 0 11122344
Q ss_pred CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 282 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 282 ~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+.++..++.+.+..++. ....++.+++.+++.+.|+++. + +|.+. +..|.|.++.+++.
T Consensus 334 npl~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~l~~l~-~--~~~v~-------------~vrG~Glm~giel~ 392 (460)
T PRK06916 334 NPLGCAVALANLELYEK-TNLIEQVARKTEYVATQLEDLF-A--LKHVG-------------DIRQLGLMVGIELV 392 (460)
T ss_pred CHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHhh-c--CCCeE-------------EeecCCceeeEEee
Confidence 44444444444433321 1244566777777888877642 1 12111 22378899999985
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.4e-15 Score=147.38 Aligned_cols=288 Identities=14% Similarity=0.190 Sum_probs=167.7
Q ss_pred CCchHHHHHHHHHHHh---CCCeEEEeCChHHHHHHHHHHhcC--------C------CCeEEEeCCCchhHHHHHHhhc
Q 013210 97 FNPTVLNLSRQMAALE---GTEAAYCTASGMSAISSVLMQLCS--------S------GGHVVAARTLYGGTHALLTHFF 159 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~---g~~~~~~tsggt~A~~~al~~l~~--------~------gd~Vi~~~~~y~~~~~~~~~~~ 159 (447)
..+...++-++|+++. +.+.++|++||+||+..|++.... . +.+|+.....||+.........
T Consensus 83 ~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~ 162 (431)
T TIGR03251 83 YTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLT 162 (431)
T ss_pred CCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhcc
Confidence 3455566777777764 346799999999999999986521 1 3679999999988653331110
Q ss_pred C---cccC---------eeEEE--eCC-------------CCHHHHHHhhc--cCCceEEEEEcCCCCCccccC----HH
Q 013210 160 P---RACN---------ITTTF--VDI-------------SDHEMVNSAIV--QGRTKVLYFESISNPTLAVAN----IP 206 (447)
Q Consensus 160 ~---~~~g---------~~~~~--v~~-------------~d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~----l~ 206 (447)
. ...+ +...+ .+. .+++++++.+. .+++.+|++|.+....|.+.+ ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~ 242 (431)
T TIGR03251 163 NTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLR 242 (431)
T ss_pred CCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHH
Confidence 0 0000 00000 000 12444555552 357899999999999998763 88
Q ss_pred HHHHHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCCCeeEEEEEcCh--HHHHHHHHHh-hhh
Q 013210 207 ELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPA--NLVNSMMDLH-QGA 276 (447)
Q Consensus 207 ~I~~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~--~~~~~l~~~~-~~~ 276 (447)
+|.++|++||+++|+||+|+++... ......|+++ ++|.+. ++|++.+++ ++........ ...
T Consensus 243 ~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~--~gK~~~-----~~g~~~~~~i~~~~~~~~~~~~~~~ 315 (431)
T TIGR03251 243 AMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA--FGKKTQ-----VCGIMAGRRVDEVADNVFAVPSRLN 315 (431)
T ss_pred HHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE--ecccCc-----cceEEecchHHHhhhhcccCccccC
Confidence 9999999999999999999766432 1223567776 788862 336666543 2221111100 111
Q ss_pred hhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013210 277 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 356 (447)
Q Consensus 277 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l 356 (447)
.+..|+.++..++.+.+..++.. ...++..++.+++.+.|++...+ +|.+.. +..|.|.++.+++
T Consensus 316 ~T~~gnpl~~aaa~a~L~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~--~~~~i~------------~vrg~G~~~~i~~ 380 (431)
T TIGR03251 316 STWGGNLVDMVRATRILEIIEEE-RLVDNARVQGAHLLARLHELAAE--FPHLVS------------NPRGRGLMCAFDL 380 (431)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHh--Ccccee------------cccccceeEEEEe
Confidence 22334444433333333332110 12344455555666666542110 111100 1126788999999
Q ss_pred CCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 357 ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 357 ~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
+..+....+...|.. .|++....| .+.+||++. ...++++++.+.++|
T Consensus 381 ~~~~~~~~~~~~l~~---~Gvl~~~~g----------------------------~~~lr~~P~-l~~t~~eid~~l~~l 428 (431)
T TIGR03251 381 PSTADRDEVIRQLYR---EGVLLLGCG----------------------------ERSIRFRPP-LTVTREEIDAAIDAI 428 (431)
T ss_pred CCHHHHHHHHHHHHh---CCeEEecCC----------------------------CCeEEEECC-ccCCHHHHHHHHHHH
Confidence 865555667777775 343221111 256999999 888999999998888
Q ss_pred HH
Q 013210 437 SR 438 (447)
Q Consensus 437 ~~ 438 (447)
++
T Consensus 429 ~~ 430 (431)
T TIGR03251 429 RR 430 (431)
T ss_pred Hh
Confidence 75
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=150.06 Aligned_cols=240 Identities=17% Similarity=0.205 Sum_probs=148.4
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhh-------
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHF------- 158 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~------- 158 (447)
..++...++.++|+++.. .+.++|++||+||+..|++.... ++ .+|+.....||+........
T Consensus 70 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~ 149 (443)
T PRK07483 70 FTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRR 149 (443)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccc
Confidence 345666788899988864 46899999999999999985431 23 47899898888875322110
Q ss_pred ---cCcccCeeEEEeCCC----C--------------HHHHHHhhc---cCCceEEEEEcCCC-CCccccC----HHHHH
Q 013210 159 ---FPRACNITTTFVDIS----D--------------HEMVNSAIV---QGRTKVLYFESISN-PTLAVAN----IPELS 209 (447)
Q Consensus 159 ---~~~~~g~~~~~v~~~----d--------------~~~l~~~i~---~~~t~lV~i~~~~N-ptG~v~~----l~~I~ 209 (447)
.+...+ +.+++.. + ++++++.+. .+++.+|++|.++. ..|.+.+ +++|.
T Consensus 150 ~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr 227 (443)
T PRK07483 150 EPFAPLLIE--AHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIR 227 (443)
T ss_pred cccCCCCCC--CEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHH
Confidence 111011 1222211 1 256666552 25689999999986 4576654 88999
Q ss_pred HHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCCC-eeEEEEEcChHHHHHHHHHh---hhhhh
Q 013210 210 RLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGAD-IIAGAVCGPANLVNSMMDLH---QGALM 278 (447)
Q Consensus 210 ~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~-~igG~l~~~~~~~~~l~~~~---~~~~~ 278 (447)
++|++||+++|+||+++++... -.....|+++ ++|.+++ |. ++ |+++.++++.+.+.... ....+
T Consensus 228 ~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~h~~T 303 (443)
T PRK07483 228 EVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVT--IAKGLGA-GYQPI-GAVLASDRIYDAIADGSGFFQHGHT 303 (443)
T ss_pred HHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeee--ehhhhcc-Ccccc-EEEEEcHHHHHHHhcCCCccccCCC
Confidence 9999999999999999766321 1122456666 8999985 54 67 78888888887765321 11223
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
..|++++..++.+.+..+++ ....++..+..++|.+.|++.-.+ +|... +..|.|.++.+++.
T Consensus 304 ~~gnpl~~aaa~a~l~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~i~-------------~vRG~Glm~gie~~ 366 (443)
T PRK07483 304 YLGHATACAAALAVQRVIAE-DGLLANVRARGEQLRARLRERLGQ--HPHVG-------------DIRGRGLFVGVELV 366 (443)
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHhc--CCCee-------------eEeecccEEEEEEe
Confidence 44555555554444443322 123445556666666666542111 11100 12378889999984
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=145.17 Aligned_cols=230 Identities=17% Similarity=0.181 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhCC-Ce--EEEeCChHHHHHHHHHHhcC-----CC---------CeEEEeCCCchhHHHHHHhhcCcccC
Q 013210 102 LNLSRQMAALEGT-EA--AYCTASGMSAISSVLMQLCS-----SG---------GHVVAARTLYGGTHALLTHFFPRACN 164 (447)
Q Consensus 102 ~~l~~~ia~l~g~-~~--~~~tsggt~A~~~al~~l~~-----~g---------d~Vi~~~~~y~~~~~~~~~~~~~~~g 164 (447)
+++-..++++++. +. -.||+|||+||.+++++... .+ ..|+++...|.++...+. ..|
T Consensus 104 ~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~-----~lG 178 (460)
T COG0076 104 ERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAAR-----YLG 178 (460)
T ss_pred HHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHH-----HhC
Confidence 3444456666776 33 69999999999998876421 11 169999999998888773 245
Q ss_pred eeEEEeCCC------CHHHHHHhhccCCceE--EEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC---Cc-
Q 013210 165 ITTTFVDIS------DHEMVNSAIVQGRTKV--LYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL---SP- 232 (447)
Q Consensus 165 ~~~~~v~~~------d~~~l~~~i~~~~t~l--V~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~---~~- 232 (447)
+..+.++.+ |+++|++++ ++++.. |+....+.++|.+-|+++|+++|+++++++|||++++++.. ++
T Consensus 179 ~~~~~v~~~~~~~~id~~~l~~~i-~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~ 257 (460)
T COG0076 179 LGLRRVPTVPTDYRIDVDALEEAI-DENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPD 257 (460)
T ss_pred CCceeEEeccCccccCHHHHHHHH-HhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCcc
Confidence 444443322 899999999 666665 77788899999999999999999999999999999966542 11
Q ss_pred ----cCC-CCeEEEeCCCccccCCCCeeEEEE-EcChHHHHHHHHHhhhhhh--------hcCCCc--cHHHHHHHHccC
Q 013210 233 ----ARL-GADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALM--------LLGPTM--NPKVAFELSERI 296 (447)
Q Consensus 233 ----~~~-g~di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~--------~~g~~~--~~~~a~~~~~~~ 296 (447)
..+ ++|.++.++||++..|-. . |++ +.+++-..+...+...++. ..++.+ ....+|..++.+
T Consensus 258 ~~~~f~l~~vdSIt~d~HK~g~aP~~-~-G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~l 335 (460)
T COG0076 258 GRWDFGLEGVDSITVDGHKYGLAPIG-C-GVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRL 335 (460)
T ss_pred chhhcCCCCceEEEECcccccCCCCC-c-eEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHh
Confidence 112 789999999999986644 3 555 4555334333322111111 111111 223344444433
Q ss_pred --CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 297 --PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 297 --~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
+.+.+.+++..++++++++.|++.+ +++..++ ..++++|.+++
T Consensus 336 G~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p-------------------~l~~V~fr~~~ 381 (460)
T COG0076 336 GREGYRKLLDRTLELARYLAEELEKLGDFELVNEP-------------------ELPIVAFRLKD 381 (460)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC-------------------ccceEEEEcCC
Confidence 5577788888999999999999987 4655432 12389999864
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=145.56 Aligned_cols=289 Identities=11% Similarity=0.109 Sum_probs=177.8
Q ss_pred CCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhhcCc-----
Q 013210 97 FNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR----- 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~----- 161 (447)
.++...++.++++++.+. +.++|++||++|+..+++.... +| .+||.....||+...........
T Consensus 86 ~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~ 165 (427)
T TIGR00508 86 THKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMH 165 (427)
T ss_pred CCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCccccc
Confidence 445567788888888743 5799999999999999985431 22 57999999998865333111000
Q ss_pred -cc-C-e-eEEEeC-----------CCCHHHHHHhhc--cCCceEEEEEcC-CCCCcccc----CHHHHHHHHHhcCCEE
Q 013210 162 -AC-N-I-TTTFVD-----------ISDHEMVNSAIV--QGRTKVLYFESI-SNPTLAVA----NIPELSRLAHDKGVTV 219 (447)
Q Consensus 162 -~~-g-~-~~~~v~-----------~~d~~~l~~~i~--~~~t~lV~i~~~-~NptG~v~----~l~~I~~la~~~gi~l 219 (447)
.. + . .+..++ ..|++++++.+. .+++++|++|++ ++..|.+. ++++|.++|++||+++
T Consensus 166 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~ll 245 (427)
T TIGR00508 166 SLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILL 245 (427)
T ss_pred ccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 00 0 0 011111 014567777763 246789999996 66666544 4889999999999999
Q ss_pred EEeCCCCCCCCC-----c--cCCCCeEEEeCCCccccCCCC-eeEEEEEcChHHHHHHHHHhh----hhhhhcCCCccHH
Q 013210 220 VVDNTFSPLVLS-----P--ARLGADVVVHSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMNPK 287 (447)
Q Consensus 220 ivD~~~~~~~~~-----~--~~~g~di~~~S~sK~~g~~g~-~igG~l~~~~~~~~~l~~~~~----~~~~~~g~~~~~~ 287 (447)
|+||+++++... . ..+..|+++ ++|.+++ |. .+ +.++.++++.+.+..... ...+..++.++..
T Consensus 246 I~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~g-G~~p~-~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~a 321 (427)
T TIGR00508 246 IADEIATGFGRTGKLFACEHAGVVPDILC--VGKALTG-GYMTL-SATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACA 321 (427)
T ss_pred EEeccccCCCcCCccchhhhcCCCCCEEE--echhhhc-Ccccc-eEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHH
Confidence 999999555321 1 223467776 8999974 53 45 888888888887763211 1112233444333
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHH
Q 013210 288 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN 367 (447)
Q Consensus 288 ~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~ 367 (447)
++.+.+..++.- ...++.+++.++|.+.|+++.. +|... ...|.|.++.+.+.+......+..
T Consensus 322 aa~a~l~~l~~~-~~~~~~~~~~~~l~~~L~~l~~---~~~i~-------------~vrg~G~~~~i~~~~~~~~~~~~~ 384 (427)
T TIGR00508 322 VAEASLAILLEG-EWQKQVSAIENQLKRELSPLRK---NPVVK-------------DVRVLGAIGVVEMYKPVNVEELQK 384 (427)
T ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhhc---CCCEE-------------eEeccccEEEEEECCccCHHHHHH
Confidence 444443322211 2346677788888888877532 12111 122678899999975434566777
Q ss_pred HhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 368 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 368 ~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+|... |+ .+... ...+|+++. ...+++.|+.+.++|++.
T Consensus 385 ~l~~~---Gv-~~~~~----------------------------~~~l~~~pp-l~~t~~~id~~~~~l~~~ 423 (427)
T TIGR00508 385 KFVEQ---GV-WIRPF----------------------------GKLIYVMPP-YIITTEQLQKLTAALIEA 423 (427)
T ss_pred HHHHC---Ce-EEEec----------------------------CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 77652 32 11100 135888888 767777777777777654
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-15 Score=148.21 Aligned_cols=218 Identities=13% Similarity=0.140 Sum_probs=138.9
Q ss_pred CCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcC-CC-CeEEEeCCCchhHHHH-HH--hh-------cCcc
Q 013210 97 FNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCS-SG-GHVVAARTLYGGTHAL-LT--HF-------FPRA 162 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~-~g-d~Vi~~~~~y~~~~~~-~~--~~-------~~~~ 162 (447)
.++...++.++|.++.+. +.++|++||+||+..|++.... .| .+|+.....||+.... +. .. .+..
T Consensus 91 ~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~ 170 (433)
T PRK00615 91 TSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHL 170 (433)
T ss_pred CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCC
Confidence 355667788888887754 5799999999999999985432 34 5788889889986422 10 00 0000
Q ss_pred c-----CeeEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013210 163 C-----NITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS 231 (447)
Q Consensus 163 ~-----g~~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~ 231 (447)
. ......++.+|++++++.++. +++.+|++|.+....|.+.| +++|.++|++||+++|+||+++++...
T Consensus 171 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G 250 (433)
T PRK00615 171 VDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVA 250 (433)
T ss_pred CCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccccccc
Confidence 0 011223345688899888732 46789999999999999887 569999999999999999999665221
Q ss_pred ------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHH
Q 013210 232 ------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRM 303 (447)
Q Consensus 232 ------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 303 (447)
-.....|+++ ++|.+|+ |..+ |++++++++++.+..... ...+..+++....++.+.+..+++ ....
T Consensus 251 ~~ga~~~~gv~PDi~~--~gK~lgg-G~p~-~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~-~~~~ 325 (433)
T PRK00615 251 QGGAAAIYHVKPDITV--YGKILGG-GLPA-AAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE-QGFY 325 (433)
T ss_pred HhHHHHhcCCCCCeEE--EcccccC-Ccce-eeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc-ccHH
Confidence 1122456765 8999984 4555 889999999887743211 011122333333333333333322 1234
Q ss_pred HHHHHHHHHHHHHHHh
Q 013210 304 KEHCHRALIFARRMKK 319 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~ 319 (447)
++..++.++|.+.|++
T Consensus 326 ~~~~~~g~~l~~~l~~ 341 (433)
T PRK00615 326 TQLSTLEQNFLSPIEE 341 (433)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666555544
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-15 Score=137.26 Aligned_cols=247 Identities=13% Similarity=0.128 Sum_probs=157.2
Q ss_pred ccccCCCCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhc-CCC-CeEEEeCCCchhHHHHHHhh---cCccc
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLC-SSG-GHVVAARTLYGGTHALLTHF---FPRAC 163 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~-~~g-d~Vi~~~~~y~~~~~~~~~~---~~~~~ 163 (447)
|...-+.++.+.++.+.++..+.. ..++|+|||+|||.++++... -.| -+||.....||+........ -+...
T Consensus 84 H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~ 163 (442)
T KOG1404|consen 84 HTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQ 163 (442)
T ss_pred EeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccc
Confidence 444455566667777777776643 458999999999999987542 223 37888888887754333110 00000
Q ss_pred ---Ce--eEEEe-CCC--------C---------HHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHHHH
Q 013210 164 ---NI--TTTFV-DIS--------D---------HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAH 213 (447)
Q Consensus 164 ---g~--~~~~v-~~~--------d---------~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~la~ 213 (447)
+. .+... .++ + .+++++.+. .+.+.+.+.|+++.-.|.+++ +++..++|+
T Consensus 164 ~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~ 243 (442)
T KOG1404|consen 164 NFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVR 243 (442)
T ss_pred cCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHH
Confidence 00 00000 010 1 134444442 234678888999998899975 889999999
Q ss_pred hcCCEEEEeCCCCCCCC-----CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHH
Q 013210 214 DKGVTVVVDNTFSPLVL-----SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 288 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~-----~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~ 288 (447)
++|.++|.||+|+++.. .....++.-.+.|+.|.+| .|..+ |+++..+++.+.+.+..+++.+..|++++..+
T Consensus 244 k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiG-nG~Pl-~AVvtt~EIa~v~~~~~~~fnTyggnP~a~av 321 (442)
T KOG1404|consen 244 KRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIG-NGFPL-GAVVTTPEIADVLNQKSSHFNTYGGNPVACAV 321 (442)
T ss_pred HcCCEEEehhhhhccccccccccccccCCCccHHHHHhhcc-CCCcc-eeeecCHHHHHHHHhccccccccCCCchhHHH
Confidence 99999999999966642 3334466666667999999 56888 88888899998887665456667777777766
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 289 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 289 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+.+++.-++. +...++..+-..+|.+.|.+... .+.. +.+|.|.|+.+++.
T Consensus 322 g~aVL~Vike-e~LqE~aa~vG~yl~~~l~~l~d~h~iIG-----------------dVRG~GLm~GvE~V 374 (442)
T KOG1404|consen 322 GLAVLKVIKE-ENLQENAAEVGSYLLEKLAALKDKHPIIG-----------------DVRGRGLMLGVELV 374 (442)
T ss_pred HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhcCCcee-----------------ecccceeEEEEEEe
Confidence 6665554432 11223334455566666655422 2221 23478899999986
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-14 Score=145.25 Aligned_cols=172 Identities=14% Similarity=0.179 Sum_probs=116.5
Q ss_pred CCCchHHHHHHHHHHHhC-------CCeEEEeCChHHHHHHHHHHhcC-------C-CCeEEEeCCCchhHHHHHHhhcC
Q 013210 96 HFNPTVLNLSRQMAALEG-------TEAAYCTASGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLTHFFP 160 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g-------~~~~~~tsggt~A~~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~~~~~ 160 (447)
..++...++.++|+++.. .+.++|++||+||+..|++.... + ..+||.....||+........-.
T Consensus 104 ~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~ 183 (472)
T PRK08742 104 FTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGD 183 (472)
T ss_pred cCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccC
Confidence 345666788888888764 25799999999999999986431 2 25899999999886533211100
Q ss_pred c-----ccC---eeEEEeCCC-----------------CHHHHHHhhc--cCCceEEEEEc-CCCCCccccC----HHHH
Q 013210 161 R-----ACN---ITTTFVDIS-----------------DHEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPEL 208 (447)
Q Consensus 161 ~-----~~g---~~~~~v~~~-----------------d~~~l~~~i~--~~~t~lV~i~~-~~NptG~v~~----l~~I 208 (447)
. ..+ ..+.+++.. +++.+++.+. .+++.+|++|. +++..|.+.+ ++++
T Consensus 184 ~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~l 263 (472)
T PRK08742 184 IPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRA 263 (472)
T ss_pred CcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHH
Confidence 0 000 012222221 2456666663 25789999999 5888887654 8899
Q ss_pred HHHHHhcCCEEEEeCCCCCCCCC-----c--cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHH
Q 013210 209 SRLAHDKGVTVVVDNTFSPLVLS-----P--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM 270 (447)
Q Consensus 209 ~~la~~~gi~livD~~~~~~~~~-----~--~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~ 270 (447)
.++|++||+++|+||+++++... . .....|+++ ++|.+++.-.++ |+++.++++++.+.
T Consensus 264 r~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~--~gKgl~gG~~Pl-aav~~~~ei~~~~~ 329 (472)
T PRK08742 264 RELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLC--LSKGLTGGFLPL-SAVLATQQLYDAFL 329 (472)
T ss_pred HHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEE--EcccccCCCCCc-ceeeccHHHHHHhh
Confidence 99999999999999999666321 1 122456666 799998532367 77888888887664
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-14 Score=147.77 Aligned_cols=242 Identities=15% Similarity=0.215 Sum_probs=147.4
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhh-----cC
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHF-----FP 160 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~-----~~ 160 (447)
..++...++.++|+++.+ .+.++|++||+||+..|++.... +| ++||.....||+........ ..
T Consensus 91 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~ 170 (456)
T PRK07480 91 TTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMH 170 (456)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhh
Confidence 456777889999998874 36799999999999999975421 23 46888888888864221000 00
Q ss_pred cccC---eeEEEeCCC---------------C--HHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHHHH
Q 013210 161 RACN---ITTTFVDIS---------------D--HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAH 213 (447)
Q Consensus 161 ~~~g---~~~~~v~~~---------------d--~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~la~ 213 (447)
...+ ..+..++.. + ++.+++.+. .+++.+|++|.++...|.+.+ +++|.++|+
T Consensus 171 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~ 250 (456)
T PRK07480 171 EQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICR 250 (456)
T ss_pred cccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence 0001 012222211 1 255654442 257889999999998898876 899999999
Q ss_pred hcCCEEEEeCCCCCCCC-----CccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH-Hh--hhhhhhcCCC
Q 013210 214 DKGVTVVVDNTFSPLVL-----SPARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-LH--QGALMLLGPT 283 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~-----~~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-~~--~~~~~~~g~~ 283 (447)
+||+++|+||+++++.. ....+| .|+++ ++|.+++.-.++ |++++++++++.+.. .. ....+..|++
T Consensus 251 ~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~~T~~gnp 327 (456)
T PRK07480 251 KYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT--IAKGLTSGYIPM-GAVGVGDRVAEVLIEEGGEFNHGFTYSGHP 327 (456)
T ss_pred HcCCEEEEechhhCCCcCcchhhhhhcCCCCCeee--eehhhccCCccc-eEEEEcHHHHHHHhcCCCCcccCCCCCcCH
Confidence 99999999999966621 111224 56655 899999532357 777778888877631 11 1122345554
Q ss_pred ccHHHHHHHHccCCcHHHHHHHH-HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 284 MNPKVAFELSERIPHLGLRMKEH-CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 284 ~~~~~a~~~~~~~~~l~~~~~~~-~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
++..++.+.+..++. ....++. .+..++|.+.|++.. + +|... +..|.|.++.+++.
T Consensus 328 l~~Aaa~a~L~~l~~-~~l~~~~~~~~g~~l~~~l~~l~-~--~~~i~-------------~vrG~Glm~gie~~ 385 (456)
T PRK07480 328 VAAAVALANLRILRD-EGIVERVRDDTGPYLQKRLRELA-D--HPLVG-------------EVRGVGLVGAIELV 385 (456)
T ss_pred HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHhh-c--CCCee-------------eEEeecceEEEEEe
Confidence 444444444433321 1133444 355666666666531 1 12111 22378899999994
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-14 Score=145.00 Aligned_cols=241 Identities=15% Similarity=0.146 Sum_probs=151.5
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------C-CCeEEEeCCCchhHHHHHHhhcCc----
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLTHFFPR---- 161 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~~~~~~---- 161 (447)
..++...++.++|+++.. .+.++|++||+||+..|++.... + ..+|+.....||+........-..
T Consensus 87 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~ 166 (466)
T PRK07030 87 FSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFT 166 (466)
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCcccc
Confidence 345666788888888764 46799999999999999986421 2 357999999998865332111000
Q ss_pred -ccC---eeEEEeCCC-----------------CHHHHHHhhc--cCCceEEEEEc-CCCCCccccC----HHHHHHHHH
Q 013210 162 -ACN---ITTTFVDIS-----------------DHEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAH 213 (447)
Q Consensus 162 -~~g---~~~~~v~~~-----------------d~~~l~~~i~--~~~t~lV~i~~-~~NptG~v~~----l~~I~~la~ 213 (447)
..+ ..+..++.. +++++++.+. .+++.+|++|. ++...|.+.+ +++|.++|+
T Consensus 167 ~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~ 246 (466)
T PRK07030 167 ETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACD 246 (466)
T ss_pred ccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHH
Confidence 000 012222211 2456677763 25789999999 6888888764 889999999
Q ss_pred hcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHH------hhhhhhh
Q 013210 214 DKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDL------HQGALML 279 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~------~~~~~~~ 279 (447)
+||+++|+||+++++... ......|+++ ++|.+++ | .++ |++++++++.+.+... .....+.
T Consensus 247 ~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~--~gKgl~g-G~~Pi-~av~~~~ei~~~~~~~~~~~~~~~h~~T~ 322 (466)
T PRK07030 247 RYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLC--LSKALTG-GYLPL-AAVLTTDTVYQAFYDDYPTLRAFLHSHSY 322 (466)
T ss_pred HcCCEEEEeehhhCcCccccchHHHhcCCCCCEEe--eehhccC-Ccccc-eEEEecHHHHHHHhcccccccccccCCCC
Confidence 999999999999666321 1223457776 7999995 6 467 8888899988776421 0112234
Q ss_pred cCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 280 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 280 ~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
.|++++..++.+.+..++. ....++..+..++|.+.|+++. + +|.+. +..|.|.++.+++.
T Consensus 323 ~gnpla~aaa~a~L~~i~~-~~l~~~~~~~G~~l~~~L~~l~-~--~~~v~-------------~vrG~Gl~~gie~~ 383 (466)
T PRK07030 323 TGNPLACAAALATLDIFEQ-DNVIENNRALARRMAEATAHLA-D--HPHVA-------------EVRQTGMILAIEMV 383 (466)
T ss_pred CCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHh-c--CCCEE-------------EeEeceeEEEEEec
Confidence 4455544444444433321 1234555666777777776542 1 22111 22378889999985
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-14 Score=127.74 Aligned_cols=217 Identities=15% Similarity=0.140 Sum_probs=160.4
Q ss_pred HHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----
Q 013210 102 LNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----- 173 (447)
Q Consensus 102 ~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----- 173 (447)
.++.+-+...+.. ...++..+|+.+...++..++.|||.|++....--+.+ +.+...+ +|++|..++.+
T Consensus 53 ~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~r--a~D~~~r-~ga~V~~v~~~~G~~~ 129 (385)
T KOG2862|consen 53 DEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQR--AADCARR-YGAEVDVVEADIGQAV 129 (385)
T ss_pred HHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHH--HHHHHHh-hCceeeEEecCcccCc
Confidence 4555555555543 34678889999999999999999999987765432222 2244556 89999998765
Q ss_pred CHHHHHHhhccCCceEEEEEcCCCCCccccC-HHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccC
Q 013210 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVAN-IPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISG 250 (447)
Q Consensus 174 d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~-l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~ 250 (447)
.++.+++.+.+.+.++|++++.-..||..+| ++.+.++||+|++++++|.+. +...+...++|+|+......|.+|+
T Consensus 130 ~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~a 209 (385)
T KOG2862|consen 130 PLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGA 209 (385)
T ss_pred cHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCC
Confidence 8999999997788999999999999999999 677889999999999999997 6677888889999999999999997
Q ss_pred CCCeeEEEEEcChHHHHHHHHHhhh----------hhhhc---------CCCccHHHHH-----HHHccCCcHHHHHHHH
Q 013210 251 GADIIAGAVCGPANLVNSMMDLHQG----------ALMLL---------GPTMNPKVAF-----ELSERIPHLGLRMKEH 306 (447)
Q Consensus 251 ~g~~igG~l~~~~~~~~~l~~~~~~----------~~~~~---------g~~~~~~~a~-----~~~~~~~~l~~~~~~~ 306 (447)
|.. + +.++.++...++++..... .+... -.+++.+..+ +.+..-+.+..+.+++
T Consensus 210 P~G-L-siisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH 287 (385)
T KOG2862|consen 210 PAG-L-SIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRH 287 (385)
T ss_pred CCC-c-ceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 754 3 6777787777776543220 00011 1122222111 1111224477899999
Q ss_pred HHHHHHHHHHHHhCCCe
Q 013210 307 CHRALIFARRMKKLGLK 323 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~ 323 (447)
+++.+++...|+++|++
T Consensus 288 ~e~s~~l~~~l~~~GLq 304 (385)
T KOG2862|consen 288 REMSKWLKLSLEALGLQ 304 (385)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999998873
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-14 Score=143.10 Aligned_cols=242 Identities=12% Similarity=0.128 Sum_probs=147.9
Q ss_pred CCCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhhcCc----
Q 013210 96 HFNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR---- 161 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~---- 161 (447)
..++...++.++|+++... +.++|++||+||+..|++.... +| .+|+.....||+...........
T Consensus 71 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~ 150 (447)
T PRK06917 71 FTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRR 150 (447)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccc
Confidence 3456667888999888753 5699999999999999986521 23 57999999998865443111100
Q ss_pred -ccC---eeEEEeCC-----------------CCHHHHHHhhcc---CCceEEEEEcCCCC-CccccC----HHHHHHHH
Q 013210 162 -ACN---ITTTFVDI-----------------SDHEMVNSAIVQ---GRTKVLYFESISNP-TLAVAN----IPELSRLA 212 (447)
Q Consensus 162 -~~g---~~~~~v~~-----------------~d~~~l~~~i~~---~~t~lV~i~~~~Np-tG~v~~----l~~I~~la 212 (447)
..+ ..+..++. .+++.+++.++. +++.+|++|.+... .|.+.| +++|.++|
T Consensus 151 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc 230 (447)
T PRK06917 151 QRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEIC 230 (447)
T ss_pred ccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHH
Confidence 000 00111110 024566776632 46899999998764 445554 88999999
Q ss_pred HhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCccccCCCC-eeEEEEEcChHHHHHHHHHhh---hhhhhcC
Q 013210 213 HDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQ---GALMLLG 281 (447)
Q Consensus 213 ~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~-~igG~l~~~~~~~~~l~~~~~---~~~~~~g 281 (447)
++||+++|+||+++++.. .-.....|+++ ++|.+++ |. ++ |++++++++++.+..... ...+..|
T Consensus 231 ~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~--~gK~l~~-G~~Pi-~a~~~~~~i~~~~~~~~~~~~~~~T~~g 306 (447)
T PRK06917 231 DHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMT--LGKGLGA-GYTPI-AATVVSDRVMEPILRGSRSIMSGHTLSA 306 (447)
T ss_pred HHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEE--eeehhcc-CCcce-EEEEEcHHHHHHHhccCcccccccCCCC
Confidence 999999999999966521 11122356655 8999985 53 67 778888888877653211 1122344
Q ss_pred CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 282 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 282 ~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
++++..++.+.+..++. ....++..++.++|.+.|+++..+...+. +..|.|.++.++|.
T Consensus 307 npl~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~---------------~vrG~Gl~~~ie~~ 366 (447)
T PRK06917 307 NPLSAATALAVLEYMEK-HNLPEKAAEKGEYLIKGLQKVQQQSTIIG---------------DVRGKGLLIGVEFV 366 (447)
T ss_pred CHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhcCCCEE---------------EEeecceEEEEEEe
Confidence 45444444444433321 12445666667777777765421110011 22378889999984
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-14 Score=143.28 Aligned_cols=240 Identities=12% Similarity=0.155 Sum_probs=142.8
Q ss_pred CCCchHHHHHHHHHHHhCC-C---eE-EEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCc--c----
Q 013210 96 HFNPTVLNLSRQMAALEGT-E---AA-YCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR--A---- 162 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~-~---~~-~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~--~---- 162 (447)
..++...++.++|+++.+. + .+ +|++||+||+..|++... ...++|+.....||+........-.. .
T Consensus 98 ~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~ 177 (459)
T PRK06931 98 LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAV 177 (459)
T ss_pred cCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCC
Confidence 3456667888888888642 2 24 556999999999998542 22457999999998876544211100 0
Q ss_pred --cCeeEEEeCCC-------------CHHHH----HHhhc-----cCCceEEEEEcCCCCCccccC----HHHHHHHHHh
Q 013210 163 --CNITTTFVDIS-------------DHEMV----NSAIV-----QGRTKVLYFESISNPTLAVAN----IPELSRLAHD 214 (447)
Q Consensus 163 --~g~~~~~v~~~-------------d~~~l----~~~i~-----~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~ 214 (447)
....+.+++.. +.+.+ ++.+. .+++.+|++|.+....|.+.+ +++|.++|++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~ 257 (459)
T PRK06931 178 NGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQK 257 (459)
T ss_pred CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 01122333322 12222 33331 135889999999988888764 8899999999
Q ss_pred cCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHH
Q 013210 215 KGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK 287 (447)
Q Consensus 215 ~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~ 287 (447)
||+++|+||+++++.. .-.....|+++ ++|.+++ |.++ |+++.++++ +.+.... ...+..|++++..
T Consensus 258 ~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt--~gK~l~g-G~Pi-~av~~~~~~-~~~~~~~-~~~T~~gnpla~a 331 (459)
T PRK06931 258 HGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV--MSKAVGG-GLPL-AVLGIKKEF-DAWQPGG-HTGTFRGNQLAMA 331 (459)
T ss_pred cCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE--ecccccC-Ccce-eeeeeHHHH-hhccCCC-CCCCCCCCHHHHH
Confidence 9999999999976631 11222456666 8999995 5888 666666553 4443221 2233455555554
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 288 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 288 ~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
++.+.+..++. ....++..+..++|.+.|++...+ +|... +..|.|.++.+++.
T Consensus 332 aala~L~~l~~-~~l~~~~~~~G~~l~~~L~~l~~~--~~~i~-------------~vrG~Glm~giel~ 385 (459)
T PRK06931 332 TGLTTLKILKE-ENLAQNAAERGEWLKAQLAELQKR--YPCIG-------------NVRGRGLMIGIEIV 385 (459)
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHh--CCCeE-------------eEecCceEEEEEEc
Confidence 44444433321 113344555555666666543111 11000 22378899999985
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=148.06 Aligned_cols=213 Identities=15% Similarity=0.223 Sum_probs=141.6
Q ss_pred CCchHHHHHHHHHHHhCCCeEE-EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAY-CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~-~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
....+.++++..|+++|++..+ +++|.|.+|.+++++++++||+|+++..+|.+++..+. +.|+.++|+++.
T Consensus 64 p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~ali-----l~ga~Pvyi~p~~~ 138 (417)
T PF01276_consen 64 PEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALI-----LSGAIPVYIPPEDN 138 (417)
T ss_dssp TBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHH-----HHTEEEEEEEEEE-
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHH-----HcCCeEEEecCCcc
Confidence 3456789999999999999865 56788899999999999999999999999999988773 368888877652
Q ss_pred --------CH-----HHHHHhhcc-CCce---EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCC----
Q 013210 174 --------DH-----EMVNSAIVQ-GRTK---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS---- 231 (447)
Q Consensus 174 --------d~-----~~l~~~i~~-~~t~---lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~---- 231 (447)
++ +.|++++++ +..+ +|++.+|+. .|.+.|+++|+++|++++++|++||+| +.+.+.
T Consensus 139 ~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~ 217 (417)
T PF01276_consen 139 EYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPR 217 (417)
T ss_dssp TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGT
T ss_pred ccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCcc
Confidence 34 889888843 3444 499988864 699999999999999999999999999 555554
Q ss_pred -ccCCCCe-------EEEeCCCccccCCCCeeEEEEEcC-hH-H-HHHHHHHhhhhhhhcCCCccHHHHHHHHc-cCCc-
Q 013210 232 -PARLGAD-------VVVHSISKFISGGADIIAGAVCGP-AN-L-VNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPH- 298 (447)
Q Consensus 232 -~~~~g~d-------i~~~S~sK~~g~~g~~igG~l~~~-~~-~-~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~- 298 (447)
...+|+| +++.|.||.+++-. -++++-.+ .. + .++++.... ....+.++....+.....+ .++.
T Consensus 218 ~a~~~gad~~~~~~~~vvqS~HKtL~alt--Qts~lh~~~~~~v~~~~~~~~l~-~~~TTSPSY~lmASlD~a~~~m~~~ 294 (417)
T PF01276_consen 218 SALALGADRPNDPGIIVVQSTHKTLPALT--QTSMLHVKGDRIVDHERVNEALS-MHQTTSPSYPLMASLDVARAQMEEE 294 (417)
T ss_dssp TCSSTTSS-CTSBEEEEEEEHHHHSSS-T--T-EEEEEETCCCTTHHHHHHHHH-HHS-SS--HHHHHHHHHHHHHHSHH
T ss_pred chhhccCccccccceeeeechhhcccccc--cceEEEecCCCcccHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhh
Confidence 3456899 99999999998543 44666433 22 2 344443222 0002222222222222221 1211
Q ss_pred -HHHHHHHHHHHHHHHHHHHH
Q 013210 299 -LGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 299 -l~~~~~~~~~~~~~l~~~L~ 318 (447)
=...+++..++++.+++.|+
T Consensus 295 ~G~~l~~~~i~~a~~~R~~i~ 315 (417)
T PF01276_consen 295 EGRELLEEAIELAEEFRKKIN 315 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 12345566677777888874
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-13 Score=128.18 Aligned_cols=271 Identities=15% Similarity=0.098 Sum_probs=163.7
Q ss_pred chhhHhhhcCCCCCCCCcccccc--c---cccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHH-hC
Q 013210 40 DPAAALASARHEFGEHGGVNMSI--E---ASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL-EG 113 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~pi--~---~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l-~g 113 (447)
||.-.|.......+..+-|+-.| | ..-+++++.++..++.+.+... ...+.+-.+. ....+.++++ +|
T Consensus 11 DpIlgL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~---~k~Yl~i~G~---~~f~~~~~~llFG 84 (396)
T COG1448 11 DPILGLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEK---TKNYLPIEGL---PEFLEAVQKLLFG 84 (396)
T ss_pred CchhHHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhcccc---ccccCCcCCc---HHHHHHHHHHhcC
Confidence 55555555444444444455433 2 2345666777666555543311 1222333332 4566666666 45
Q ss_pred CC---------eEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-------CH
Q 013210 114 TE---------AAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DH 175 (447)
Q Consensus 114 ~~---------~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------d~ 175 (447)
.+ ..+-|.|||-|+..+..-+. .+...|.+++|+|+.+...+. ..|.++..++.- |.
T Consensus 85 ~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~-----~aGl~v~~Y~Yyd~~~~~~df 159 (396)
T COG1448 85 ADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFE-----AAGLEVETYPYYDAETKGLDF 159 (396)
T ss_pred CCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHH-----hcCCceeeeeccccccccccH
Confidence 43 14678999999999886553 345679999999998888774 267777655432 67
Q ss_pred HHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----------cCCCC-eE
Q 013210 176 EMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----------ARLGA-DV 239 (447)
Q Consensus 176 ~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~----------~~~g~-di 239 (447)
+.+.+.+++ ++..++.-...+||||.-.. +++|+++.++++.+-++|-+|.+|.-.. ...+. -+
T Consensus 160 ~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~l 239 (396)
T COG1448 160 DGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELL 239 (396)
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEE
Confidence 777666633 23333344677999999875 6688899999999999999995553221 11122 68
Q ss_pred EEeCCCccccCCCCeeEEEEEc--ChHHHHHHHHHhhhhhhhcCCCccHH---HHHHHHcc-------CCcHHHHHHHHH
Q 013210 240 VVHSISKFISGGADIIAGAVCG--PANLVNSMMDLHQGALMLLGPTMNPK---VAFELSER-------IPHLGLRMKEHC 307 (447)
Q Consensus 240 ~~~S~sK~~g~~g~~igG~l~~--~~~~~~~l~~~~~~~~~~~g~~~~~~---~a~~~~~~-------~~~l~~~~~~~~ 307 (447)
++.|+||.||.-|.|+|++.+. +.+..+++........+..-++++.. .....+.. ..++....+++.
T Consensus 240 va~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~ 319 (396)
T COG1448 240 VASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRIL 319 (396)
T ss_pred EEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999665533 44555544332111111122222222 22222221 122445667788
Q ss_pred HHHHHHHHHHHhCC
Q 013210 308 HRALIFARRMKKLG 321 (447)
Q Consensus 308 ~~~~~l~~~L~~~~ 321 (447)
+.|+.|.+.|++.+
T Consensus 320 ~mR~~lv~~L~~~~ 333 (396)
T COG1448 320 EMRQALVDALKALG 333 (396)
T ss_pred HHHHHHHHHHHhhC
Confidence 88999999998853
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-14 Score=132.45 Aligned_cols=225 Identities=13% Similarity=0.148 Sum_probs=147.2
Q ss_pred ccccCCCCchHHHHHHHHHHHh---CCCeEEEeCChHHHHHHHHHHhcCCC--C------eEEEeCCCchhH-HHHHHh-
Q 013210 91 FIYSRHFNPTVLNLSRQMAALE---GTEAAYCTASGMSAISSVLMQLCSSG--G------HVVAARTLYGGT-HALLTH- 157 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~---g~~~~~~tsggt~A~~~al~~l~~~g--d------~Vi~~~~~y~~~-~~~~~~- 157 (447)
|..+-+..-...++++.+.+.. .++.++|++|||+|+..||+...+.. + ++|.....||+- ...+..
T Consensus 90 hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~ 169 (433)
T KOG1401|consen 90 HSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVT 169 (433)
T ss_pred eccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhh
Confidence 3333333333567888888888 67889999999999999997654321 2 488888888764 333321
Q ss_pred hcCcccCe-------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCC
Q 013210 158 FFPRACNI-------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNT 224 (447)
Q Consensus 158 ~~~~~~g~-------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~ 224 (447)
.... ++. .+.....+|..++++.++. +++.+|++|.++...|.++. +..|.++|+++|+++|.||+
T Consensus 170 ~~s~-y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV 248 (433)
T KOG1401|consen 170 GNSK-YGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEV 248 (433)
T ss_pred cccc-cCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehh
Confidence 1111 222 3444455699999998843 34799999999999888863 77899999999999999999
Q ss_pred CCCCCCCcc-----CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCC
Q 013210 225 FSPLVLSPA-----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIP 297 (447)
Q Consensus 225 ~~~~~~~~~-----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~ 297 (447)
++++..... -+++...+.++.|.+++ |.++ |+..+++++.+.+....+ +..++.|+++...++...+..+.
T Consensus 249 ~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~g-GlPi-gA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~ 326 (433)
T KOG1401|consen 249 QTGLGRLGYGWAQEYFGVTPDITTVAKPLGG-GLPI-GATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELK 326 (433)
T ss_pred hhCccccchHHHHHHhCcCCcceeehhhccC-Ccee-EEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHc
Confidence 977543211 12444444449999995 5889 888888899888764322 13345566665555555554443
Q ss_pred cHHHHHHHHHHHHHHHHHHHHh
Q 013210 298 HLGLRMKEHCHRALIFARRMKK 319 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~ 319 (447)
+ .+..++..+..+.|++.|.+
T Consensus 327 ~-~e~~k~vs~~~k~L~~~l~e 347 (433)
T KOG1401|consen 327 D-PETLKNVSKIGKELRKLLDE 347 (433)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 2 23334444444455555544
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=124.34 Aligned_cols=296 Identities=17% Similarity=0.212 Sum_probs=173.0
Q ss_pred chHHHHHHHHHHHhC----CCeEEEeCChHHHHHHHHHHhcC---CC--CeEEE-eCCCchhHHHHHHh--hcCcccCee
Q 013210 99 PTVLNLSRQMAALEG----TEAAYCTASGMSAISSVLMQLCS---SG--GHVVA-ARTLYGGTHALLTH--FFPRACNIT 166 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g----~~~~~~tsggt~A~~~al~~l~~---~g--d~Vi~-~~~~y~~~~~~~~~--~~~~~~g~~ 166 (447)
+.++.+.+.+.+-+| .+++.+|+|+..+...++..+.. .| ++|+. -.|+|-++....-. .+.. ..-+
T Consensus 78 ~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs-~kP~ 156 (417)
T COG3977 78 VLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVS-AKPN 156 (417)
T ss_pred HHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceee-ccCC
Confidence 344445555555455 35699999999999888765532 24 35555 45888777654310 0000 0001
Q ss_pred EEEeCC------CCHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCC-CCCC---CC--
Q 013210 167 TTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTF-SPLV---LS-- 231 (447)
Q Consensus 167 ~~~v~~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~-~~~~---~~-- 231 (447)
+..++. .|.+.|. + .+.+.+|++.-|.||||.|. .+.+|.++|++||+.+++|++| .+|+ ++
T Consensus 157 iel~~~g~FKY~vDF~~l~--i-~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~ 233 (417)
T COG3977 157 IELLPAGQFKYHVDFEHLH--I-GESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDA 233 (417)
T ss_pred cccccccceeeccCHHHcc--c-ccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccc
Confidence 111111 1666665 3 57899999999999999997 3778888999999999999999 4453 22
Q ss_pred -ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC--CcHHHHH-H-HH
Q 013210 232 -PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRM-K-EH 306 (447)
Q Consensus 232 -~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~-~-~~ 306 (447)
+.--...+.|.|+||. |.||.|+ |.+++++++++.+..... ......+.+.++.+..++..- ..+.+.+ + -+
T Consensus 234 ~~~w~~NiilC~SLSK~-GLPG~R~-GIiIane~viqaitnmn~-iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY 310 (417)
T COG3977 234 TPLWNENIILCMSLSKL-GLPGSRC-GIIIANEKVIQAITNMNG-IISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFY 310 (417)
T ss_pred cccCCCCEEEEeehhhc-CCCCcce-eEEEccHHHHHHHHhccc-eeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHH
Confidence 2222578999999995 6799998 999999999988876543 222444555565555544432 2222221 1 24
Q ss_pred HHHHHHHHHHHHhC-C---CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccc
Q 013210 307 CHRALIFARRMKKL-G---LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 307 ~~~~~~l~~~L~~~-~---~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs 381 (447)
..+.+...+.|++. + ..+..|. ..-++|+.|++ +...+.+..+|+.+ |+ .+-
T Consensus 311 ~~~~q~~~~~l~~~lp~~~~~iHkpE-------------------GAIFlWLWf~dLPItt~~LYq~LKa~---Gv-l~V 367 (417)
T COG3977 311 RNRVQTTIAILRRYLPEYRCLIHKPE-------------------GAIFLWLWFKDLPITTEELYQRLKAR---GV-LMV 367 (417)
T ss_pred HHHHHHHHHHHHHhcCccceeeecCC-------------------cceeehhhhccCCCCHHHHHHHHHhC---eE-EEe
Confidence 55555555566542 2 2333332 11256667763 22356788888863 32 222
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHHh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSRM 439 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~~ 439 (447)
-|.+.. |+ ++ ....-...++|+|.- .+ .++.-+..+.+.++++
T Consensus 368 PG~~FF----pG------l~----~ewpH~hqC~Rmn~~-~~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 368 PGHYFF----PG------LD----KEWPHTHQCMRMNYV-PEPEKIEKGVAILAEEVERA 412 (417)
T ss_pred cccccC----CC------CC----CCCCCccceEEEecC-CCHHHHHHHHHHHHHHHHHH
Confidence 332211 11 11 001122468999988 43 3444455565555544
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=138.57 Aligned_cols=288 Identities=13% Similarity=0.165 Sum_probs=166.8
Q ss_pred CCchHHHHHHHHHHHh---CCCeEEEeCChHHHHHHHHHHhcC--------CC------CeEEEeCCCchhHHHHHHhhc
Q 013210 97 FNPTVLNLSRQMAALE---GTEAAYCTASGMSAISSVLMQLCS--------SG------GHVVAARTLYGGTHALLTHFF 159 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~---g~~~~~~tsggt~A~~~al~~l~~--------~g------d~Vi~~~~~y~~~~~~~~~~~ 159 (447)
.++...++.++|+++. +.+.++|++||+||+..|++.... .| .+||.....||+........-
T Consensus 90 ~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~ 169 (443)
T PRK08297 90 YTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLT 169 (443)
T ss_pred CCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhc
Confidence 3455667888888876 246799999999999999986521 12 579999999988754331110
Q ss_pred C-----c----ccC---eeEEEe--CC-------------CCHHHHHHhhc--cCCceEEEEEcCCCCCccccC----HH
Q 013210 160 P-----R----ACN---ITTTFV--DI-------------SDHEMVNSAIV--QGRTKVLYFESISNPTLAVAN----IP 206 (447)
Q Consensus 160 ~-----~----~~g---~~~~~v--~~-------------~d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~----l~ 206 (447)
. + ..+ +...++ +. .+++++++.+. .+++.+|++|.+....|.+.+ ++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~ 249 (443)
T PRK08297 170 NTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFA 249 (443)
T ss_pred CCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHH
Confidence 0 0 000 000001 10 02345556663 257899999999998898753 88
Q ss_pred HHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH-Hh---hh
Q 013210 207 ELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-LH---QG 275 (447)
Q Consensus 207 ~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-~~---~~ 275 (447)
+|.++|++||+++|+||+++++.... .....|+++ ++|.++ ++|++.++ ++.+.+.. .. ..
T Consensus 250 ~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~-----~~a~l~~~-~i~~~~~~~~~~~~~~ 321 (443)
T PRK08297 250 AMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA--FGKKTQ-----VCGIMAGR-RVDEVEDNVFAVSSRI 321 (443)
T ss_pred HHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEE--eccccc-----ccceecch-HHHHhhhhhccCcccc
Confidence 99999999999999999997663221 123467776 789984 33555554 33222111 10 11
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..+..|+.++..++...+..++. ....++..++.+++.+.|++...+ +|.... ...|.|.++.++
T Consensus 322 ~~T~~gnpl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~~~~------------~vrg~G~~~~i~ 386 (443)
T PRK08297 322 NSTWGGNLVDMVRARRILEVIEE-DGLVENAARQGEYLLARLEELAAE--FPAVVS------------NVRGRGLMCAFD 386 (443)
T ss_pred CCCCCccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH--CCCcce------------eeeccceEEEEE
Confidence 22233444444444444332221 123455566666666666553111 111100 112678899999
Q ss_pred eCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013210 356 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 356 l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
+.+.+....+...+.. .|++. . |. ....+||++. ...+++.++.+.++
T Consensus 387 ~~~~~~~~~~~~~l~~---~Gvl~-~----------~~-----------------~~~~lr~~P~-l~~t~~eid~~l~~ 434 (443)
T PRK08297 387 LPTTADRDEVIRRLWE---EGVLV-L----------PC-----------------GERSIRFRPA-LTVTTEEIDAAIDA 434 (443)
T ss_pred ecCHHHHHHHHHHHHH---CCEEE-e----------cC-----------------CCCeEEEECC-ccCCHHHHHHHHHH
Confidence 9865555677777664 23321 1 10 1246899888 66666666666666
Q ss_pred HHHh
Q 013210 436 LSRM 439 (447)
Q Consensus 436 l~~~ 439 (447)
|++.
T Consensus 435 l~~~ 438 (443)
T PRK08297 435 LRRA 438 (443)
T ss_pred HHHH
Confidence 6544
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-14 Score=126.72 Aligned_cols=264 Identities=24% Similarity=0.282 Sum_probs=179.0
Q ss_pred CCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE---eCChHHHHHHHHHHhcCCCCeEEEeC-CCchhHHHHHH-----
Q 013210 86 PDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT----- 156 (447)
Q Consensus 86 ~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~---tsggt~A~~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~----- 156 (447)
+++++|-|...+. +.|++..|+.+|+|..++ .-|||.|+..+|.++++|||+.+... --|....+.+.
T Consensus 55 ~~stGYGydD~GR---dtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~ 131 (416)
T COG4100 55 TGSTGYGYDDLGR---DTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEG 131 (416)
T ss_pred CCCCCCCccccch---hHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCC
Confidence 3455665554443 568899999999988655 35899999999999999999877544 33554444441
Q ss_pred -hhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEE----cCCCCCccccCHHHHHHHHHhc--CCEEEEeCC
Q 013210 157 -HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFE----SISNPTLAVANIPELSRLAHDK--GVTVVVDNT 224 (447)
Q Consensus 157 -~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~----~~~NptG~v~~l~~I~~la~~~--gi~livD~~ 224 (447)
.-+.. +|+....++.. |.+.+..++ +++|++|.+. ...-|.-.+.+++++.++.|+. ++++.+|++
T Consensus 132 ~gSL~d-fgi~Y~~v~Lt~~gkiD~~~v~~~i-~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNC 209 (416)
T COG4100 132 QGSLKD-FGIKYKAVPLTADGKIDIQAVKTAI-SDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNC 209 (416)
T ss_pred cccHHH-hCcceeecccccCCcccHHHHHHhc-CccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 11112 46666666654 899999999 8999999986 3455777777888999998874 799999999
Q ss_pred CCCCC--CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHH--hhhhhhhcCCCccHHHHHHHHccCCcHH
Q 013210 225 FSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL--HQGALMLLGPTMNPKVAFELSERIPHLG 300 (447)
Q Consensus 225 ~~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~--~~~~~~~~g~~~~~~~a~~~~~~~~~l~ 300 (447)
|+.|. ..|...|+|++.+|+-|.-|+.-...||++.++.++++..... ..+.+.-.|.++.+ .....+++---+
T Consensus 210 YGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~yRlTaPGIG~e~Gat~~~--l~~myqGlFlAP 287 (416)
T COG4100 210 YGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAAYRLTAPGIGREGGATLYS--LREMYQGLFLAP 287 (416)
T ss_pred chhhhhccCccccchhhhccceeeCCCCceeeccceeechHHHHHhhceeeecCCccccccccHHH--HHHHHhhhccch
Confidence 98886 4577889999999999999987667899999999998765321 22222223333221 122222332223
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
....+-.+-+......|.+.+..++. . ...+. .--+-++.|.+.++..+|+.+++.
T Consensus 288 hvv~qa~Kga~fta~~le~lg~~~~P-~-~~~kR-------------tDlIQavkf~~~eKmIaFcqaiQ~ 343 (416)
T COG4100 288 HVVSQAVKGAHFTARFLEKLGFPVNP-K-YDAKR-------------TDLIQAVKFGSKEKMIAFCQAIQA 343 (416)
T ss_pred HHHHHHhhhhHHHHHHHHHcCCCCCC-c-ccccc-------------cchhhheecCCHHHHHHHHHHHhh
Confidence 34444455555566677777765442 1 11111 112667888888889999998874
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-14 Score=140.31 Aligned_cols=286 Identities=14% Similarity=0.131 Sum_probs=165.8
Q ss_pred CCchHHHHHHHHHH----HhC--CCeEEEeCChHHHHHHHHHHhcC--------------------------CC---CeE
Q 013210 97 FNPTVLNLSRQMAA----LEG--TEAAYCTASGMSAISSVLMQLCS--------------------------SG---GHV 141 (447)
Q Consensus 97 ~~~~~~~l~~~ia~----l~g--~~~~~~tsggt~A~~~al~~l~~--------------------------~g---d~V 141 (447)
.++...++.+++++ +.. .+.++|++||+||+..|++.... +| .+|
T Consensus 99 ~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~i 178 (464)
T TIGR00699 99 GNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSI 178 (464)
T ss_pred CcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEE
Confidence 44444556666543 443 36799999999999999986521 11 279
Q ss_pred EEeCCCchhHHHHHHhhcC----cccCe---eEEEeCC-------------------CCHHHHHHhhcc--CCceEEEEE
Q 013210 142 VAARTLYGGTHALLTHFFP----RACNI---TTTFVDI-------------------SDHEMVNSAIVQ--GRTKVLYFE 193 (447)
Q Consensus 142 i~~~~~y~~~~~~~~~~~~----~~~g~---~~~~v~~-------------------~d~~~l~~~i~~--~~t~lV~i~ 193 (447)
|.....||+.......... ...+. .+.+++. .+++.++++++. +++.+|++|
T Consensus 179 i~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~E 258 (464)
T TIGR00699 179 LSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVE 258 (464)
T ss_pred EEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 9999999886543311110 00010 1111111 135567777732 468999999
Q ss_pred cCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cCCC----CeEEEeCCCccccCCCCeeEEEEE
Q 013210 194 SISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLG----ADVVVHSISKFISGGADIIAGAVC 260 (447)
Q Consensus 194 ~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-----~~~g----~di~~~S~sK~~g~~g~~igG~l~ 260 (447)
.+....|.+.+ +++|.++|++||+++|+||+++++.... ..+| .|+++ ++|.+|+. |+++
T Consensus 259 Pv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t--~gK~lg~g-----G~~~ 331 (464)
T TIGR00699 259 PIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVT--FSKKFQTA-----GYFF 331 (464)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEE--ehhhhccC-----Cccc
Confidence 99999999987 9999999999999999999996653211 1123 67755 89999643 3333
Q ss_pred cChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CCCCchhHHHH
Q 013210 261 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHHELLK 339 (447)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~-~~~~p~~~l~~ 339 (447)
.++ .+....... ...+..|+..+..++.+.+..++. ....++..+..++|.+.|++...+ +|. +.
T Consensus 332 ~~~-~~~~~~~~~-~~~T~~gnp~~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~~i~--------- 397 (464)
T TIGR00699 332 HDP-AFRPNKPYR-QFNTWMGDPSRALILREIIQEIKR-KDLLENVAHVGDYLYTGLEDLQKK--YPEFIQ--------- 397 (464)
T ss_pred cch-hccCCCCcc-cccCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCcee---------
Confidence 332 111101111 122234444444444433333211 113344455555666666543111 110 00
Q ss_pred HHhccCC--CcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 013210 340 SMANKEY--GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 417 (447)
Q Consensus 340 ~~~~~~~--g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRi 417 (447)
+.. |.|.++.+++++...+..+.+.+.. .|++. .. ...+.|||
T Consensus 398 ----~vRg~G~Glm~gie~~~~~~~~~i~~~~~~---~Gvl~-~~---------------------------~g~~~ir~ 442 (464)
T TIGR00699 398 ----NLRGKGRGTFIAWDTPDEAKRDKLLKKARN---NGVNI-GG---------------------------CGVKAIRL 442 (464)
T ss_pred ----eecccCeEEEEEEecCCHHHHHHHHHHHHH---CCcEE-ec---------------------------CCCCeEEE
Confidence 111 5788999999865556777777765 23321 10 01367999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHh
Q 013210 418 SVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 418 S~g~~~~~~~~i~~l~~al~~~ 439 (447)
++. ...+++.|+.+.++|++.
T Consensus 443 ~Pp-l~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 443 RPM-LVFQKHHADIFLEIISKI 463 (464)
T ss_pred eCC-CCCCHHHHHHHHHHHHHh
Confidence 999 888888888888777653
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=135.43 Aligned_cols=219 Identities=16% Similarity=0.203 Sum_probs=140.9
Q ss_pred cCCCCchHHHHHHHHHHHh--CCCeEEEeCChHHHHHHHHHHhc-------C-CCCeEEEeCCCchhHHHHHHh------
Q 013210 94 SRHFNPTVLNLSRQMAALE--GTEAAYCTASGMSAISSVLMQLC-------S-SGGHVVAARTLYGGTHALLTH------ 157 (447)
Q Consensus 94 ~r~~~~~~~~l~~~ia~l~--g~~~~~~tsggt~A~~~al~~l~-------~-~gd~Vi~~~~~y~~~~~~~~~------ 157 (447)
....++...++.++|.++. +.+.++|++||++|+..|++... . ...+|+.....||+.......
T Consensus 54 ~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~ 133 (339)
T PF00202_consen 54 SGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPP 133 (339)
T ss_dssp TTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTH
T ss_pred cceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcc
Confidence 3455677788999999998 55779999999999999998655 1 236899999999874322211
Q ss_pred ---hcCcccCeeEEEeCCCCHHH----------HHHh---hccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCC
Q 013210 158 ---FFPRACNITTTFVDISDHEM----------VNSA---IVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV 217 (447)
Q Consensus 158 ---~~~~~~g~~~~~v~~~d~~~----------l~~~---i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi 217 (447)
.... ....+..+|..++.. +++. ...+++.+|++|.++...|.+.+ +++|.++|++||+
T Consensus 134 ~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gi 212 (339)
T PF00202_consen 134 YRKGFGP-LYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGI 212 (339)
T ss_dssp HHTTTCS-SSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-
T ss_pred ccccccc-cccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehccccccccc
Confidence 1111 122456667776555 2222 22567899999999988887753 8999999999999
Q ss_pred EEEEeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHH
Q 013210 218 TVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF 290 (447)
Q Consensus 218 ~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~ 290 (447)
++|+||+++++... ...+..|+++ ++|.+++. .++ |+++.++++.+.+..... ..+..+++.+..++.
T Consensus 213 llI~DEV~tG~gRtG~~~a~~~~gv~PDiv~--~gK~l~gG-~p~-sav~~~~~i~~~~~~~~~-~~T~~g~p~~~aaa~ 287 (339)
T PF00202_consen 213 LLIADEVQTGFGRTGKFFASEHYGVDPDIVT--FGKGLGGG-LPI-SAVLGSEEIMEAFQPGSH-GSTFGGNPLSCAAAL 287 (339)
T ss_dssp EEEEEETTTTTTTTSSSSGHHHHTSSSSEEE--EEGGGGTT-SSE-EEEEEEHHHHTTSCTTSS-TCTTTT-HHHHHHHH
T ss_pred ceecccccccccccCCccceecccccCcccc--cccchhhh-hhc-ccccccchhhcccccccc-ccccccchHhhhhhh
Confidence 99999999766321 1233578888 56999964 888 888888888776643322 222444444444444
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013210 291 ELSERIPHLGLRMKEHCHRALIFARRMKK 319 (447)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 319 (447)
..+..++. ....++..+..++|.+.|++
T Consensus 288 ~~l~~~~~-~~~~~~~~~~g~~l~~~L~~ 315 (339)
T PF00202_consen 288 ATLEILEE-EDLLERVRELGERLREGLRE 315 (339)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhcc-HHHHHHHHHHHHHHHHHHHH
Confidence 44433322 11233445555555555543
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-13 Score=141.54 Aligned_cols=197 Identities=14% Similarity=0.165 Sum_probs=123.2
Q ss_pred CCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhcC---------------------CCCeEEEeCCCchhH
Q 013210 96 HFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLCS---------------------SGGHVVAARTLYGGT 151 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~~---------------------~gd~Vi~~~~~y~~~ 151 (447)
..++...+|.++|++..+ .+.++|++||++|+..|++...+ ...+||.....||+.
T Consensus 406 ~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~ 485 (817)
T PLN02974 406 NVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGD 485 (817)
T ss_pred cCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCC
Confidence 455666778888888765 35799999999999999975421 124699999998874
Q ss_pred HH-HHHhh----------cCccc--CeeE----EE---------eCCC-------------------------------C
Q 013210 152 HA-LLTHF----------FPRAC--NITT----TF---------VDIS-------------------------------D 174 (447)
Q Consensus 152 ~~-~~~~~----------~~~~~--g~~~----~~---------v~~~-------------------------------d 174 (447)
.. .+... .+... +..+ .+ ++.. .
T Consensus 486 T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~ 565 (817)
T PLN02974 486 TLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAY 565 (817)
T ss_pred CHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHHH
Confidence 32 22100 00000 0000 00 0000 0
Q ss_pred HHHHHHhhc-------cCCceEEEEEcC-CCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC-----CccCCC-
Q 013210 175 HEMVNSAIV-------QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-----SPARLG- 236 (447)
Q Consensus 175 ~~~l~~~i~-------~~~t~lV~i~~~-~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~-----~~~~~g- 236 (447)
.+.+++.++ .+++.+|++|.+ +...|.+.+ +++|.++|++||+++|+||+++++.. ....+|
T Consensus 566 ~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv 645 (817)
T PLN02974 566 RSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGC 645 (817)
T ss_pred HHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCC
Confidence 144666553 146889999995 777888864 88999999999999999999977632 122234
Q ss_pred -CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh-----hhhhhhcCCCccHHHHHHHHcc
Q 013210 237 -ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-----QGALMLLGPTMNPKVAFELSER 295 (447)
Q Consensus 237 -~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-----~~~~~~~g~~~~~~~a~~~~~~ 295 (447)
.|+++ ++|.+++.-.++ |++++++++.+.+.... .+..+..|+.++..+|.+.+..
T Consensus 646 ~PDIi~--~gKgLtgG~~Pl-aa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~ 707 (817)
T PLN02974 646 KPDIAC--YAKLLTGGLVPL-AATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQW 707 (817)
T ss_pred CCCEEe--ecccccCCCCcc-EEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHH
Confidence 56666 899999532577 88888999988774210 1123345555555555544443
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-13 Score=129.53 Aligned_cols=246 Identities=15% Similarity=0.081 Sum_probs=153.5
Q ss_pred cccccc-cCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC-CCCeE
Q 013210 64 ASATFT-VMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS-SGGHV 141 (447)
Q Consensus 64 ~att~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~-~gd~V 141 (447)
.|.|-+ .|+.++..+++.+ ...|+ .+|++.+|++.+++++|.+.+++|.+|..+...+++.+++ +|+.+
T Consensus 47 rSDTgT~apS~~m~aAM~~G-------DD~Y~--gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~ 117 (467)
T TIGR02617 47 LTDSGTGAVTQSMQAAMMRG-------DEAYS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEK 117 (467)
T ss_pred ccCCCCCCCCHHHHHHHHcC-------Ccccc--cCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcccccccc
Confidence 677777 4777776677653 23455 5788899999999999999999999999999999999888 56655
Q ss_pred EEeC--------CCchhHHHHHHhhcCcccCeeEEEe------------C--C-CCHHHHHHhhcc---CCceEEEEEcC
Q 013210 142 VAAR--------TLYGGTHALLTHFFPRACNITTTFV------------D--I-SDHEMVNSAIVQ---GRTKVLYFESI 195 (447)
Q Consensus 142 i~~~--------~~y~~~~~~~~~~~~~~~g~~~~~v------------~--~-~d~~~l~~~i~~---~~t~lV~i~~~ 195 (447)
++.. ..|..+..... ..|+.+..+ + . .|+++|+++|+. ++...+.+.-.
T Consensus 118 g~~~~~~~v~hn~~fett~g~a~-----l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt 192 (467)
T TIGR02617 118 GLDRSKMVAFSNYFFDTTQGHSQ-----INGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATIT 192 (467)
T ss_pred cccccccccceEEEEecchHHHH-----HcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEE
Confidence 5333 22332221211 135443332 1 1 189999999943 23344444333
Q ss_pred CCC-CccccC---HHHHHHHHHhcCCEEEEeCCC----CCC---------CCCccC------CCCeEEEeCCCccccCCC
Q 013210 196 SNP-TLAVAN---IPELSRLAHDKGVTVVVDNTF----SPL---------VLSPAR------LGADVVVHSISKFISGGA 252 (447)
Q Consensus 196 ~Np-tG~v~~---l~~I~~la~~~gi~livD~~~----~~~---------~~~~~~------~g~di~~~S~sK~~g~~g 252 (447)
+|- .|.+.+ ++++.++|++||+.+|+|.+- +.+ ..++.+ -.+|.++.|++|-++.|
T Consensus 193 ~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp- 271 (467)
T TIGR02617 193 CNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP- 271 (467)
T ss_pred EecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc-
Confidence 444 456665 668899999999999999863 111 112221 25899999999999977
Q ss_pred CeeEEEEEcChH----HHHHHHHHh---hhhhhhcCCCccHHHHHHHHccCCc--HHHHHHHHHHHHHHHHHHHHhCCCe
Q 013210 253 DIIAGAVCGPAN----LVNSMMDLH---QGALMLLGPTMNPKVAFELSERIPH--LGLRMKEHCHRALIFARRMKKLGLK 323 (447)
Q Consensus 253 ~~igG~l~~~~~----~~~~l~~~~---~~~~~~~g~~~~~~~a~~~~~~~~~--l~~~~~~~~~~~~~l~~~L~~~~~~ 323 (447)
+||+++++++ +.++++... .++.+.. .++.....++..++.+ -...++......++|.+.|.+.|..
T Consensus 272 --vGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYG--Glagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~Gvp 347 (467)
T TIGR02617 272 --MGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYG--GLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEIGVV 347 (467)
T ss_pred --ccceEEecchhHHHHHHHHHhhcccccCCcCcC--chhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 6799988654 333333221 1222222 3333333333333322 1233444456677889999998875
Q ss_pred eeCCC
Q 013210 324 VLYPG 328 (447)
Q Consensus 324 v~~p~ 328 (447)
+..++
T Consensus 348 i~~~G 352 (467)
T TIGR02617 348 CQQAG 352 (467)
T ss_pred EEecC
Confidence 54343
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-13 Score=142.76 Aligned_cols=155 Identities=13% Similarity=0.080 Sum_probs=124.3
Q ss_pred CchHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
...+.++++..|+++|++.. ++++|.|.+|.+++++++++||+|++...+|.+++..+. +.|+.++|+.+.
T Consensus 204 ~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~-----L~ga~Pvyl~P~~~~ 278 (755)
T PRK15029 204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLI-----LTGAKPVYMVPSRNR 278 (755)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH-----HcCCeEEEecccccc
Confidence 34578999999999999875 567888999999999999999999999999999988773 368888887532
Q ss_pred -------C-----HHHHHHhhcc-CCce--------EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCC
Q 013210 174 -------D-----HEMVNSAIVQ-GRTK--------VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 231 (447)
Q Consensus 174 -------d-----~~~l~~~i~~-~~t~--------lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~ 231 (447)
+ ++.++++++. +.++ +|++++|+. .|.+.++++|+++|+++|+++++||+| +++.+.
T Consensus 279 ~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~ 357 (755)
T PRK15029 279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFN 357 (755)
T ss_pred cCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccccccC
Confidence 3 8889888832 3344 899988864 699999999999999999999999999 444332
Q ss_pred -------cc-----C-CCCe-EEEeCCCccccCCCCeeEEEEE
Q 013210 232 -------PA-----R-LGAD-VVVHSISKFISGGADIIAGAVC 260 (447)
Q Consensus 232 -------~~-----~-~g~d-i~~~S~sK~~g~~g~~igG~l~ 260 (447)
.. . .|+| +++.|.||.+++ ...++++-
T Consensus 358 ~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a--lTQaS~LH 398 (755)
T PRK15029 358 PIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA--LSQASYIH 398 (755)
T ss_pred ccccccccccccccccCCCceEEEEchhhcccc--hhhhhhhe
Confidence 22 2 5788 999999999974 34445553
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=134.12 Aligned_cols=223 Identities=16% Similarity=0.184 Sum_probs=142.3
Q ss_pred CCchHHHHHHH----HHHHhCCC---------eEEEeCChHHHHHHHHHHhcC--------CC-----C-eEEEeCCCch
Q 013210 97 FNPTVLNLSRQ----MAALEGTE---------AAYCTASGMSAISSVLMQLCS--------SG-----G-HVVAARTLYG 149 (447)
Q Consensus 97 ~~~~~~~l~~~----ia~l~g~~---------~~~~tsggt~A~~~al~~l~~--------~g-----d-~Vi~~~~~y~ 149 (447)
..|...++|+. +++++|.+ ..+||+|||+||..++.+... .| + .|++++..|.
T Consensus 73 ~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~ 152 (373)
T PF00282_consen 73 ASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHY 152 (373)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-T
T ss_pred cccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccccc
Confidence 45665566655 55566655 379999999999988865421 12 2 5778888898
Q ss_pred hHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhcc----CCce-EEEEEcCCCCCccccCHHHHHHHHHhcCCEE
Q 013210 150 GTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQ----GRTK-VLYFESISNPTLAVANIPELSRLAHDKGVTV 219 (447)
Q Consensus 150 ~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~----~~t~-lV~i~~~~NptG~v~~l~~I~~la~~~gi~l 219 (447)
+....+. .+|+.++.++.+ |+++|++++++ ..+. +|+....+..+|.+-|+++|+++|+++++++
T Consensus 153 S~~Kaa~-----~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wl 227 (373)
T PF00282_consen 153 SIEKAAR-----ILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWL 227 (373)
T ss_dssp HHHHHHH-----HTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EE
T ss_pred HHHHhcc-----eeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceee
Confidence 8887772 356667777665 78888887732 2233 5666778889999999999999999999999
Q ss_pred EEeCCCCC-CCCCc----cCC---CCeEEEeCCCccccCCCCeeEEEE-EcChHHHHHHHHHhhhhhh------------
Q 013210 220 VVDNTFSP-LVLSP----ARL---GADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALM------------ 278 (447)
Q Consensus 220 ivD~~~~~-~~~~~----~~~---g~di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~------------ 278 (447)
|+|++|++ ..+.+ ... .+|-++.++||+++.|-. . |++ +.++..+.........+..
T Consensus 228 HVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~-~-~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~ 305 (373)
T PF00282_consen 228 HVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYG-C-GVLLVRDKSDLRDAFSINADYLGNDDRESDESYDY 305 (373)
T ss_dssp EEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS---EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCE
T ss_pred eecccccccccccccccccccccccccccccchhhhhcCCcc-c-eeEEeecccchHHHhccChhhhccccccccccccc
Confidence 99999965 22211 111 589999999999998765 3 665 4455444322100000000
Q ss_pred ----hcCCC-ccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeC
Q 013210 279 ----LLGPT-MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLY 326 (447)
Q Consensus 279 ----~~g~~-~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~ 326 (447)
..++. ......|..++ +.+.+.+++++..++++++.+.|++.+. ++..
T Consensus 306 ~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~ 361 (373)
T PF00282_consen 306 GDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVN 361 (373)
T ss_dssp EEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS
T ss_pred ccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 01111 12233444443 3455778899999999999999999875 5544
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-13 Score=136.66 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhC-CCeEEEeCChHHHHHHHHHHhc-CCCC-eEEEe-CCCchhHHHHHHhhcCcccCe------eEEEeC
Q 013210 102 LNLSRQMAALEG-TEAAYCTASGMSAISSVLMQLC-SSGG-HVVAA-RTLYGGTHALLTHFFPRACNI------TTTFVD 171 (447)
Q Consensus 102 ~~l~~~ia~l~g-~~~~~~tsggt~A~~~al~~l~-~~gd-~Vi~~-~~~y~~~~~~~~~~~~~~~g~------~~~~v~ 171 (447)
.++.++|+++.. .+.++|++||+||+..|++... -.|+ +|+.. ...|++.............+. .+..++
T Consensus 91 ~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 170 (431)
T PRK06209 91 LDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR 170 (431)
T ss_pred HHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC
Confidence 357788888764 5789999999999999998542 2343 55555 344443221110000000111 133445
Q ss_pred CCCHHHHHHhhcc--CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc---c-CCCCeEEEeCCC
Q 013210 172 ISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP---A-RLGADVVVHSIS 245 (447)
Q Consensus 172 ~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~---~-~~g~di~~~S~s 245 (447)
..|+++|++.++. +++.+|++|++....+....+++|.++|++||+++|+||+++++.... . .+++..-+.+++
T Consensus 171 ~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PDi~t~g 250 (431)
T PRK06209 171 YNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPDLSCFG 250 (431)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcceeeeh
Confidence 5689999988832 357899999887653333359999999999999999999996654321 1 123333335589
Q ss_pred ccccCCCCeeEEEEEcChHHHHH
Q 013210 246 KFISGGADIIAGAVCGPANLVNS 268 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~~~~~~ 268 (447)
|.+|+ |..+ |++++++++++.
T Consensus 251 K~lgg-G~p~-~av~~~~~i~~~ 271 (431)
T PRK06209 251 KALGN-GFAV-SALAGKREYMEL 271 (431)
T ss_pred hhhcC-Cccc-EEEEEHHHHHhh
Confidence 99995 5655 888888888775
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-12 Score=123.72 Aligned_cols=285 Identities=14% Similarity=0.094 Sum_probs=177.5
Q ss_pred CCCchHHHHHHHHHHHhCCC--e--EEEeCChHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHHHhhcCcccCe-eEEE
Q 013210 96 HFNPTVLNLSRQMAALEGTE--A--AYCTASGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNI-TTTF 169 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~~--~--~~~tsggt~A~~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~-~~~~ 169 (447)
.......+.++.+.++++.+ . +++++|||.++.+++..++ ++|++|++.. .|+.-.. .....+ .|+ ++..
T Consensus 36 ~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~--~eia~~-~g~~~v~~ 111 (374)
T TIGR01365 36 LGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWV--TDVTKQ-LKLPDVRV 111 (374)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHH--HHHHHh-cCCCCcEE
Confidence 33456678888999999853 2 5779999999999999998 4788888764 4433211 022233 566 3555
Q ss_pred eCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEe
Q 013210 170 VDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVH 242 (447)
Q Consensus 170 v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~ 242 (447)
++.. ++++++. +. .|++.+.-..||...|+++|.+.+ +++++++|.+- +..+++.. ++|+++.
T Consensus 112 l~~~~g~~~~~~~ve~---~~---~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d--~iDv~~t 181 (374)
T TIGR01365 112 LEAEYGKLPDLKKVDF---KN---DVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH--KLDVVTF 181 (374)
T ss_pred EcCCCCCCCCHHHcCC---CC---CEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh--HCcEEEE
Confidence 5433 7777762 21 255666667789999997766332 58999999985 44444444 4999999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHh---------h---------h-hhhhcCCCccHHHHHHHHccC------C
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLH---------Q---------G-ALMLLGPTMNPKVAFELSERI------P 297 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~---------~---------~-~~~~~g~~~~~~~a~~~~~~~------~ 297 (447)
|..|.+++|+. + ++++.+++.+++..... . . ....+..+++....+++...+ .
T Consensus 182 gsQK~L~~ppG-l-s~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~eg 259 (374)
T TIGR01365 182 SWQKVLGGEGA-H-GMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIG 259 (374)
T ss_pred echhccCCCCc-e-EEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHcc
Confidence 99999998875 3 78888887776654210 0 0 000122232322222222211 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH------H-----HHHH
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE------K-----ANRL 365 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~------~-----~~~l 365 (447)
.+..+.+++.++++.+++++++.| ..+.... +.. ..-.++.+.++.+. + ...|
T Consensus 260 Gle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~-~~~--------------rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~ 324 (374)
T TIGR01365 260 GLKPLIARADDNLAVLEAFVAKNNWIHFLAET-PEI--------------RSNTSVCLKVVDPAIDALDEDAQADFAKEL 324 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcccCCCC-hhh--------------cCCCeEEEEeCCccccccccchhhHHHHHH
Confidence 478899999999999999999998 4433211 110 01126777775321 2 4667
Q ss_pred HHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 366 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 366 ~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+.|+.. | +.+..|.. ...+..+||... -+-..+.++.|.++|+-+
T Consensus 325 ~~~l~~~---g-i~i~~G~~-----------------------~~~~~~fRIg~~-G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 325 ISTLEKE---G-VAYDIGSY-----------------------RDAPSGLRIWCG-ATVEKSDLECLCPWLDWA 370 (374)
T ss_pred HHHHHHC---C-EEEecccc-----------------------ccCCCceEEecC-CcCCHHHHHHHHHHHHHH
Confidence 7777752 3 34443311 011367999755 566677788888888754
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-12 Score=116.50 Aligned_cols=282 Identities=16% Similarity=0.168 Sum_probs=178.3
Q ss_pred HHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCC-chhHHHHHHhhcCccc--CeeEEEeCCCC
Q 013210 102 LNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC--SSGGHVVAARTL-YGGTHALLTHFFPRAC--NITTTFVDISD 174 (447)
Q Consensus 102 ~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~-y~~~~~~~~~~~~~~~--g~~~~~v~~~d 174 (447)
+.+-.++|-++|+. +++++.|.+--++.+|.+.+ ++|+.||+++-. |+.-...+..... .. |.++.. .+.
T Consensus 79 ~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~-~~~~~~~~~~--~~~ 155 (407)
T COG3844 79 ERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLAD-LLGIGYDLEG--VIA 155 (407)
T ss_pred hHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhh-hhccccccee--eeC
Confidence 56788899999974 48888877777777776654 348888888754 3332222211111 12 223332 247
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccC-C
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISG-G 251 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~-~ 251 (447)
++++++++ ++++.+|++.+++.-||...|+.+|-+++|++|++++-|-+| +.++.+....|+|+.+.|.+|++++ |
T Consensus 156 P~~~~~~~-~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGP 234 (407)
T COG3844 156 PRALEEAI-TDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGP 234 (407)
T ss_pred hHHHHHhh-ccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCC
Confidence 78999999 889999999999999999999999999999999999999999 5566777777999999999999974 5
Q ss_pred CCeeEEEEEcChHHHHH----HHHH---------------hhhhhhhcCCCccHHHHHHHHccC-----CcHHHHHHHHH
Q 013210 252 ADIIAGAVCGPANLVNS----MMDL---------------HQGALMLLGPTMNPKVAFELSERI-----PHLGLRMKEHC 307 (447)
Q Consensus 252 g~~igG~l~~~~~~~~~----l~~~---------------~~~~~~~~g~~~~~~~a~~~~~~~-----~~l~~~~~~~~ 307 (447)
|. + +++...++..++ +..+ ..+...+..++.+......+.-.+ -.+.+..++-.
T Consensus 235 Ga-p-a~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSl 312 (407)
T COG3844 235 GA-P-AGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSL 312 (407)
T ss_pred CC-c-eeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhh
Confidence 54 5 444443332222 1110 001111111222222222211122 12455556667
Q ss_pred HHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013210 308 HRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 308 ~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
.+.+++.+.++.+ ++.+..|.. +. -.|+-+++..+. +.+++.+|..+ |++ |
T Consensus 313 aLTd~fieLvEa~~~~~~l~l~tPr~--~~-------------~rGsqvS~~hp~---~~~V~qaLi~r---GVi----g 367 (407)
T COG3844 313 ALTDYFIELVEARCEYYGLTLVTPRA--HE-------------ERGSQVSLYHPH---GYQVMQALIDR---GVI----G 367 (407)
T ss_pred HHHHHHHHHHHhccccCCcEEeccch--hh-------------hccceeeEecCc---HHHHHHHHHHc---Ccc----c
Confidence 7778888877654 335555541 11 368899999874 45667777653 322 2
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC-----CCHHHHHHHHHHHHHHh
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL-----GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~-----~~~~~~i~~l~~al~~~ 439 (447)
++ ..++.||+.+. . .|+-+.++.|.++|++.
T Consensus 368 D~------------------------R~P~vlRfgft-PlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 368 DF------------------------REPDVLRFGFT-PLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred cc------------------------cCCCeeeecCc-cceechhHHHHHHHHHHHHHHhh
Confidence 11 12577888876 4 56666677777777654
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-12 Score=130.57 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH-HHhhcCcccCeeEEEeCCC---
Q 013210 99 PTVLNLSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~-~~~~~~~~~g~~~~~v~~~--- 173 (447)
....++++..|+++|++.. ++++|.|.+|.+++++++.+||.|++...+|.+.+.. +. +.|+.++|+.+.
T Consensus 174 G~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLi-----LsGa~PVYl~P~~n~ 248 (720)
T PRK13578 174 GAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALI-----QAGATPVYLETARNP 248 (720)
T ss_pred hHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHH-----HcCCeEEEeeccccc
Confidence 4568999999999999885 5678889999999999999999999999999998874 42 368888876542
Q ss_pred -------C-----HHHHHHhhccC--C-------ceEEEEEcCCCCCccccCHHHHHHH-HHhcCCEEEEeCCC-CCCCC
Q 013210 174 -------D-----HEMVNSAIVQG--R-------TKVLYFESISNPTLAVANIPELSRL-AHDKGVTVVVDNTF-SPLVL 230 (447)
Q Consensus 174 -------d-----~~~l~~~i~~~--~-------t~lV~i~~~~NptG~v~~l~~I~~l-a~~~gi~livD~~~-~~~~~ 230 (447)
+ .+.|++++++. + .+++++++|+. .|.+.++++|+++ ++.++ ++++||+| +.+.+
T Consensus 249 ~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F 326 (720)
T PRK13578 249 FGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQF 326 (720)
T ss_pred cCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeCcchhhhcc
Confidence 3 45588877432 1 58899988764 6999999999998 68888 99999999 55544
Q ss_pred Cc---------cCCCCe----EEEeCCCccccCCCCeeEEEEEc
Q 013210 231 SP---------ARLGAD----VVVHSISKFISGGADIIAGAVCG 261 (447)
Q Consensus 231 ~~---------~~~g~d----i~~~S~sK~~g~~g~~igG~l~~ 261 (447)
.+ .+.|+| +++.|.||.+++= .-++++-.
T Consensus 327 ~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~al--TQaS~LHv 368 (720)
T PRK13578 327 IPMMADCSPLLLELNENDPGIFVTQSVHKQQAGF--SQTSQIHK 368 (720)
T ss_pred CcccccCChhhhhcCCCCCCeEEEEChhhcchhh--hhHhhhhc
Confidence 44 245889 9999999999743 34455533
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-12 Score=123.86 Aligned_cols=282 Identities=12% Similarity=0.066 Sum_probs=179.1
Q ss_pred CchHHHHHHHHHHHhCCC---e-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe---
Q 013210 98 NPTVLNLSRQMAALEGTE---A-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV--- 170 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~---~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v--- 170 (447)
....+++++.+.++++.+ . +++..|||.++.+++..++.+|+++++....+-+-. +.+...+ .|......
T Consensus 51 ~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r--~~~~a~~-~g~~~~~~~~~ 127 (365)
T PLN02452 51 LSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKK--AAKEAKK-YCKTNVIASGK 127 (365)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHH-hCCCcEEEecC
Confidence 356788999999999863 2 455689999999999999989988777665543332 2122223 44332222
Q ss_pred C-----CCCHHHHHHhhccCCceEEEEEcCCCCCcc-ccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEe
Q 013210 171 D-----ISDHEMVNSAIVQGRTKVLYFESISNPTLA-VANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVH 242 (447)
Q Consensus 171 ~-----~~d~~~l~~~i~~~~t~lV~i~~~~NptG~-v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~ 242 (447)
+ ..++++++ . .++.+.|.+++....+|+ ..|++++. ++++++|.++ +..+++..++++|+ .
T Consensus 128 ~~~~~~~~~~~~~~--~-~~~~~~v~~~hnETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~--~ 196 (365)
T PLN02452 128 DEKYTKIPSVSEWE--L-TPDAKFVHICANETIHGVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYGVIY--A 196 (365)
T ss_pred CCCCCCCCChHHcC--C-CCCCcEEEECCCCCCCcEecCcccccC------CCeEEEECCccccCcccCHHHcCEEE--E
Confidence 1 12455542 2 456888988888888899 47887775 3899999998 55667777777766 5
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh-----h---hcCCCccHHHHH---HHHccC---CcHHHHHHHHHH
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL-----M---LLGPTMNPKVAF---ELSERI---PHLGLRMKEHCH 308 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~-----~---~~g~~~~~~~a~---~~~~~~---~~l~~~~~~~~~ 308 (447)
|.+|.+|++| + |+++.++++++++........ . ..-.+++....+ .++..+ ..+..+.+++++
T Consensus 197 saqK~lGP~G--l-~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~ 273 (365)
T PLN02452 197 GAQKNVGPSG--V-TIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIR 273 (365)
T ss_pred ecccccCCCC--e-EEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999888 4 888888888766432110000 0 011222222222 222222 136667788899
Q ss_pred HHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccc
Q 013210 309 RALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 309 ~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
+++++.+.|++. ++ ..+.. .+.+ ....+++|.+++.+...+|++.++..+ +..--| ..
T Consensus 274 ~a~~l~~~l~~~~G~--y~~~~--~~~~-----------rs~~~vsF~~~~~~~~~~f~~~~~~~g----~~~~~G-~r- 332 (365)
T PLN02452 274 KADLLYDAIDESNGF--YVCPV--EKSV-----------RSLMNVPFTLGGSELEAEFVKEAAKAG----MVQLKG-HR- 332 (365)
T ss_pred HHHHHHHHHHhCCCc--ccCCC--ChHH-----------hCCeEEEEEcCCchhHHHHHHHHHHCC----CcccCC-cc-
Confidence 999999999885 33 11111 1110 123489999987666788999888643 222222 10
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
+-+-+|+|+= -.-..+.++.|.+.+++..+
T Consensus 333 -----------------------~~gg~R~s~y-na~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 333 -----------------------SVGGMRASIY-NAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred -----------------------ccCceEEECc-CCCCHHHHHHHHHHHHHHHH
Confidence 0123999876 66777888999988887754
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-11 Score=129.55 Aligned_cols=275 Identities=15% Similarity=0.151 Sum_probs=184.1
Q ss_pred hHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc-C--CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCC
Q 013210 100 TVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC-S--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~-~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d 174 (447)
.+-+++..++++.|.+ ++-+..++|++.++++++.. . ++++|++++..|+.+...++..... .|++++.++
T Consensus 110 ~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~-~g~~v~~~~--- 185 (939)
T TIGR00461 110 ALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKP-FGIEVIVVD--- 185 (939)
T ss_pred HHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHh-cCcEEEEEc---
Confidence 3467888999999987 45788888888887776642 2 3478999999999999888655554 799988874
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCcccc---
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFIS--- 249 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g--- 249 (447)
+++|++.+ ++..|++.+|| -.|.+.|+++|++++|++|.+++++.-. ..+..+|-++|+|+++++..++.-
T Consensus 186 ~~~l~~~~---~~~~v~~q~Pn-~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g 261 (939)
T TIGR00461 186 CSDIKKAV---DVFGCLLQYPA-TDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMG 261 (939)
T ss_pred HHHHhhcC---CEEEEEEECCC-CCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCC
Confidence 55666555 57788888875 5899999999999999999999997655 344567889999999876555433
Q ss_pred --CCCCeeEEEEEcChHHHHHHHHH--------------------hh-hhhhhcCC--CccHH--H-----HHHHHccCC
Q 013210 250 --GGADIIAGAVCGPANLVNSMMDL--------------------HQ-GALMLLGP--TMNPK--V-----AFELSERIP 297 (447)
Q Consensus 250 --~~g~~igG~l~~~~~~~~~l~~~--------------------~~-~~~~~~g~--~~~~~--~-----a~~~~~~~~ 297 (447)
||+ +|++..++++...+-.. |. +..+--++ ....+ . +++...+-+
T Consensus 262 ~GGP~---aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~ 338 (939)
T TIGR00461 262 YGGPH---AAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPK 338 (939)
T ss_pred CCCCc---eeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHH
Confidence 343 48998888776654110 00 00000011 00111 1 112222334
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGF 377 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~ 377 (447)
.+.+.-++...++.++.+.|.+.|+++..+. +-..+.+.++.. .++.+.+++... |
T Consensus 339 GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~~-------------------fF~~~~v~~~~~-~~~~i~~~~~~~---g- 394 (939)
T TIGR00461 339 GLKNIARRIHSLTSILANGLENDPHELINKT-------------------WFDTLTVKVGNG-ISSELLKAAEEF---N- 394 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-------------------ccceEEEEeCCC-CHHHHHHHHHHC---C-
Confidence 4555566678888999999998877665432 011556666422 255676666652 2
Q ss_pred ccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 378 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 378 ~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
+.+.. ..++.|++|+. ..+++++|+.|.+++.
T Consensus 395 --i~l~~-------------------------~~~~~i~~s~~-E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 395 --INLRA-------------------------VDTTTVGIALD-ETTTKADVENLLKVFD 426 (939)
T ss_pred --Ceeee-------------------------cCCCEEEEEee-cCCCHHHHHHHHHHhc
Confidence 11210 12367999999 8999999999999885
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-10 Score=110.90 Aligned_cols=281 Identities=17% Similarity=0.175 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc---CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCH
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC---SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~---~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~ 175 (447)
+-+.+..+++|.|.+ ++-..-++|.+-.+++++.. ++.++++++...|+.+...++....- .|+++..++.+|+
T Consensus 122 LfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~-~g~~i~~~~~~d~ 200 (450)
T COG0403 122 LFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEG-LGIEIEVVDADDL 200 (450)
T ss_pred HHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhccc-CceEEEEeccchh
Confidence 456788899998864 34555677777777766642 22579999999999999999766654 7999999999999
Q ss_pred HHHHHhhccCCceEEEEEcCCCCCc-cccCHHHHHHHHHhcCCEEEEe--CCCCCCCCCccCCCCeEEEeCCCcc-----
Q 013210 176 EMVNSAIVQGRTKVLYFESISNPTL-AVANIPELSRLAHDKGVTVVVD--NTFSPLVLSPARLGADVVVHSISKF----- 247 (447)
Q Consensus 176 ~~l~~~i~~~~t~lV~i~~~~NptG-~v~~l~~I~~la~~~gi~livD--~~~~~~~~~~~~~g~di~~~S~sK~----- 247 (447)
+++++. ...++..|++++|+ -.| .+.++.+|.+.+|++|+++++= -.--.+.-.|-++|+||+++|..-+
T Consensus 201 ~~l~~~-~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmg 278 (450)
T COG0403 201 DDLESA-DDGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMG 278 (450)
T ss_pred hhhhhc-cccCeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcC
Confidence 999988 46789999999997 466 6678999999999999887753 3323445578899999999998764
Q ss_pred ccCCCCeeEEEEEcChHHHHHH-------------------------HHHhhhhhhhcCCCccHH-----HHHHHHccCC
Q 013210 248 ISGGADIIAGAVCGPANLVNSM-------------------------MDLHQGALMLLGPTMNPK-----VAFELSERIP 297 (447)
Q Consensus 248 ~g~~g~~igG~l~~~~~~~~~l-------------------------~~~~~~~~~~~g~~~~~~-----~a~~~~~~~~ 297 (447)
|||| -+|+...++++...+ +.+|..-.++.-++.... ..++...+-+
T Consensus 279 fGGP---hag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~ 355 (450)
T COG0403 279 FGGP---HAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQ 355 (450)
T ss_pred CCCc---ceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChH
Confidence 3433 248888887765533 001111101111111111 1122333445
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 375 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~ 375 (447)
.+.+..++..++..+++++|++.+ .++.... . + -.+.+.++. +....++.+...
T Consensus 356 GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~--f----------F-------dt~~v~~~~-~~~~~l~~~~~~---- 411 (450)
T COG0403 356 GLKEIAERIHRLAAYLAAGLKEIGAGVELVFDH--F----------F-------DTFTVRVPE-EVAEALLAAAIA---- 411 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCceEecccc--c----------e-------eeEEEecch-hHHHHHHHHHHh----
Confidence 566677778899999999999665 4544321 0 0 045566653 345566655543
Q ss_pred ccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 376 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 376 g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
-++.++. ++...+=+|+. ..++++.|+.|.+++...
T Consensus 412 --~G~~L~~-------------------------~~~~~~~ia~t-Et~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 412 --GGINLRR-------------------------VDADTVLIALT-ETTTKEDIDALVAAFGGV 447 (450)
T ss_pred --cCCceee-------------------------ecCCceEEEee-cccCHHHHHHHHHHHhhh
Confidence 1333331 12345667777 667789999998888654
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-10 Score=109.63 Aligned_cols=283 Identities=11% Similarity=0.011 Sum_probs=172.2
Q ss_pred CchHHHHHHHHHHHhCCC---eE-EEeCChHHHHHHHHHHhcCCCCeEE-EeCCCchhHHHHHHhhcCcccCeeEEEeC-
Q 013210 98 NPTVLNLSRQMAALEGTE---AA-YCTASGMSAISSVLMQLCSSGGHVV-AARTLYGGTHALLTHFFPRACNITTTFVD- 171 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~---~~-~~tsggt~A~~~al~~l~~~gd~Vi-~~~~~y~~~~~~~~~~~~~~~g~~~~~v~- 171 (447)
.....++++.+.++++.+ .+ ++.+|||.++.++...++.+|++++ +....+-+... .....+ .| ++..+.
T Consensus 48 ~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~--~~ea~~-~g-~v~~~~~ 123 (364)
T PRK12462 48 SSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKA--IGEASR-VA-AMRVVWD 123 (364)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHH--HHHHHh-cC-CceEecC
Confidence 355688899999999863 25 5556799999999999999998654 33333322221 122223 34 333322
Q ss_pred --------CCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEE
Q 013210 172 --------ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVV 241 (447)
Q Consensus 172 --------~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~ 241 (447)
..++++++ + .++.+.|++++-...+|+..| ++.+.+++++|+|.+- +.-+++..++ |++.
T Consensus 124 ~~~~~~~~~p~~~~~~--~-~~d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~~--dvi~ 193 (364)
T PRK12462 124 GAASGYRTLPSLAELD--W-DARAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEAY--GMVY 193 (364)
T ss_pred cCCCCCCcCCCHHHhc--c-CCCCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChHHc--cEEE
Confidence 11455542 3 456788888777777888876 3333468999999885 3333444444 9999
Q ss_pred eCCCccccCCCCeeEEEEEcChHHHHHHHHH-------hhhh-hhhcCCCccHHHHHH---HHccC--C--cHHHHHHHH
Q 013210 242 HSISKFISGGADIIAGAVCGPANLVNSMMDL-------HQGA-LMLLGPTMNPKVAFE---LSERI--P--HLGLRMKEH 306 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~-------~~~~-~~~~g~~~~~~~a~~---~~~~~--~--~l~~~~~~~ 306 (447)
.+..|.+|++|. ++++.+++.+++.... +... .....++++....+. .++.+ + .+..+.++.
T Consensus 194 agsQKnlgP~Gl---tvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~ 270 (364)
T PRK12462 194 AHAQKNLGPAGV---TVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDIN 270 (364)
T ss_pred eeccccCCCCce---EEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 999999998884 6788888777654321 0000 001222333333222 22221 2 466677888
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcc
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
++.++.+.+.+++.+.-...+..+.. ..-..+.|.+.+.+...+|++.++.. |++ .+-|..
T Consensus 271 ~~ka~~ly~~id~~~~~~~~~~~~~~--------------RS~mnv~f~~~~~~l~~~f~~~a~~~---gl~--~lkGhr 331 (364)
T PRK12462 271 ARKAAMLYATLDALNEVIDCHAHRAA--------------RSTMNVAFRFRQPRLDTLFKEQSTEA---GFC--GLSGHR 331 (364)
T ss_pred HHHHHHHHHHHHhCCCcccCCCChhh--------------cCcceEEEEcCCHHHHHHHHHHHHHC---CCc--cccCCc
Confidence 99999999999887621111111111 01126778888777678888888863 321 111111
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
+-+.+|+|+= ..-+.+.++.|.+-+++..+
T Consensus 332 ------------------------~vgg~Ras~y-na~~~e~v~~L~~fm~~f~~ 361 (364)
T PRK12462 332 ------------------------SIGGIRASLY-NAVSEQAVSRLCAFLKDFAI 361 (364)
T ss_pred ------------------------ccCceEEEcC-CCCCHHHHHHHHHHHHHHHH
Confidence 1255999987 77778888888888877654
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-10 Score=116.69 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=116.8
Q ss_pred CchHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.....++++..|+++|++.. ++++|.|.+|.+++++++.+||.|++...+|.+.+..+. +.|+.++|+.+.
T Consensus 194 ~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLi-----lsga~PVYl~P~~n~ 268 (713)
T PRK15399 194 TGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLM-----MSDVVPIWLKPTRNA 268 (713)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH-----HcCCeeEEecccccc
Confidence 34568899999999999885 557788999999999999999999999999999888762 368888887543
Q ss_pred -------C-----HHHHHHhhcc-CCc---eEEEEEcCCCCCccccCHHHHHHHHHhcCCEE-EEeCCC-CCCCCCc---
Q 013210 174 -------D-----HEMVNSAIVQ-GRT---KVLYFESISNPTLAVANIPELSRLAHDKGVTV-VVDNTF-SPLVLSP--- 232 (447)
Q Consensus 174 -------d-----~~~l~~~i~~-~~t---~lV~i~~~~NptG~v~~l~~I~~la~~~gi~l-ivD~~~-~~~~~~~--- 232 (447)
+ .+.+++++++ ++. +++++++| +-.|.+.++++|+++| |+.+ ++|++| +.+.+.+
T Consensus 269 ~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~ 344 (713)
T PRK15399 269 LGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQ 344 (713)
T ss_pred cCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccC
Confidence 3 3888888843 233 57888887 4579999999999999 6666 699999 4444433
Q ss_pred ----cCC--CCeEE---EeCCCccccCCCCeeEEEEEc
Q 013210 233 ----ARL--GADVV---VHSISKFISGGADIIAGAVCG 261 (447)
Q Consensus 233 ----~~~--g~di~---~~S~sK~~g~~g~~igG~l~~ 261 (447)
... ++|.+ +.|.||.+++-. -++++-.
T Consensus 345 ~~sam~~~~~aD~~i~~tQStHKtL~alT--QaS~iHv 380 (713)
T PRK15399 345 GKSGMSGERVPGKVIFETQSTHKMLAAFS--QASLIHI 380 (713)
T ss_pred CcChhhCCCCCCeeeeeeeehhccccccc--hheeeee
Confidence 112 46776 999999998543 4466633
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-10 Score=118.74 Aligned_cols=145 Identities=13% Similarity=0.115 Sum_probs=114.7
Q ss_pred chHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 99 PTVLNLSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
....++++..|+++|++.. ++++|.|.+|.+++++++.+||.|++...+|.+.+..+. +.|+.++|+.+.
T Consensus 195 G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLi-----lsga~PVYl~P~rn~~ 269 (714)
T PRK15400 195 GPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMM-----MSDVTPIYFRPTRNAY 269 (714)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH-----HcCCeEEEeccccccc
Confidence 4568999999999999885 557777999999999999999999999999999887762 368888887543
Q ss_pred -----------CHHHHHHhhcc-CCce---EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCc-----
Q 013210 174 -----------DHEMVNSAIVQ-GRTK---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP----- 232 (447)
Q Consensus 174 -----------d~~~l~~~i~~-~~t~---lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~----- 232 (447)
+.+.+++.++. ++.+ .+++++| +-.|.+.++++|+++|+.++ +++|++| +.+.+.+
T Consensus 270 Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~ 346 (714)
T PRK15400 270 GILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGK 346 (714)
T ss_pred CCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCc
Confidence 37888888842 2333 6888887 45799999999999999887 6899999 4444332
Q ss_pred --cCCCC---e--EEEeCCCccccCC
Q 013210 233 --ARLGA---D--VVVHSISKFISGG 251 (447)
Q Consensus 233 --~~~g~---d--i~~~S~sK~~g~~ 251 (447)
...|+ | +++.|.||.+++-
T Consensus 347 sam~~ga~~~~~i~vtQStHKtL~al 372 (714)
T PRK15400 347 CGMSGGRVEGKVIYETQSTHKLLAAF 372 (714)
T ss_pred ChhhcCCCCCCceEEEEchhhcccch
Confidence 22355 4 9999999999853
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-10 Score=113.02 Aligned_cols=278 Identities=16% Similarity=0.156 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHHhCCCeE--EEeCChHHHHHHHHHHh---cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCC
Q 013210 100 TVLNLSRQMAALEGTEAA--YCTASGMSAISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~~~--~~tsggt~A~~~al~~l---~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d 174 (447)
.+-+++..|+++.|.+-+ -...+++++-.+++++. -+++++|+++...|+.+...++.+..- .|++++.++.++
T Consensus 111 ~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~-~g~~iv~~~~~~ 189 (429)
T PF02347_consen 111 ALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAP-LGIEIVEVPLDE 189 (429)
T ss_dssp HHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCH-CCEEEEEE-BBT
T ss_pred HHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhh-CCeEEEEecccc
Confidence 456889999999998753 45567777666665554 223459999999999999888766654 799998887652
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC---CCCCCCccCCCCeEEEeCCCccccCC
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF---SPLVLSPARLGADVVVHSISKFISGG 251 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~---~~~~~~~~~~g~di~~~S~sK~~g~~ 251 (447)
... ..++++.+|++++|| -.|.+.++++|.+++|++|.++++ .+- -.+..+|.++|+|+++++ +|.||.|
T Consensus 190 ~~~----~d~~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p 262 (429)
T PF02347_consen 190 DGT----TDDDDTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIP 262 (429)
T ss_dssp TCS----B-STTEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT--
T ss_pred cCC----ccccCeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCccc
Confidence 111 105689999999997 579999999999999999999987 543 223457888999999876 8877643
Q ss_pred ---CCeeEEEEEcChHHHHHHHH-------------------------Hhhhhhh-hcCCCccH----HHHHHHHccCCc
Q 013210 252 ---ADIIAGAVCGPANLVNSMMD-------------------------LHQGALM-LLGPTMNP----KVAFELSERIPH 298 (447)
Q Consensus 252 ---g~~igG~l~~~~~~~~~l~~-------------------------~~~~~~~-~~g~~~~~----~~a~~~~~~~~~ 298 (447)
|.+-.|++..++++...+-. .+..-.+ ..++.... ..+++...+-+.
T Consensus 263 ~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~G 342 (429)
T PF02347_consen 263 MGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEG 342 (429)
T ss_dssp -CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHH
Confidence 22334888888877654411 0110000 11111111 122334444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013210 299 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM 378 (447)
Q Consensus 299 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~ 378 (447)
+.+.-++...++.++.+.|++. ..+.+... +- --++....+. ....+++++... .
T Consensus 343 L~~iA~~~~~~A~yl~~~L~~~-~~~~~~~~---~f--------------~e~v~~~~~~-~~~~~l~~~~~~---~--- 397 (429)
T PF02347_consen 343 LREIAERIHLNAHYLAERLKKI-YGLPFDNP---FF--------------FEFVVVFSKD-KEVEELLKRGIE---G--- 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCT-TBECSSSS---SB--------------SSEEEEESS--HHHHHHHHTT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCcccCCC---Cc--------------eeeeeecCCc-HHHHHHHHHHHh---c---
Confidence 7777778899999999999886 32222221 10 0034444333 334455554443 1
Q ss_pred cccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 379 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 379 ~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
++++.. ...+.+-+|+. -.+++++|+.|.++|
T Consensus 398 gl~~~~-------------------------~~~~~~li~~T-E~~t~edid~lv~~f 429 (429)
T PF02347_consen 398 GLNLRY-------------------------PDDGALLICVT-ETRTKEDIDRLVEAF 429 (429)
T ss_dssp -EEEGG-------------------------G-SSEEEEE---TT--HHHHHHHHH--
T ss_pred CCCccc-------------------------cCCCeEEEEcc-CCCCHHHHHHHHhcC
Confidence 112110 11347888998 888999999998775
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-11 Score=111.58 Aligned_cols=289 Identities=15% Similarity=0.222 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHH
Q 013210 101 VLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNS 180 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ 180 (447)
.-.+++.||+++|+++.++.+-|-.++..++.++++.||-|++.+....+....++ ...-.+.+...+|.++++.
T Consensus 141 HldlE~~iakF~G~E~aivYs~gF~ti~S~ipafsKrGDIi~~de~~nfaIq~Glq-----lSRS~i~~Fkhndm~~ler 215 (467)
T KOG1358|consen 141 HLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQ-----LSRSTISYFKHNDMEDLER 215 (467)
T ss_pred ecccHHHHHHhhCCcceeeeccccchhhhcchhhhccCcEEEEehhhhHHHHHHHh-----hhhheeEEecCCCHHHHHH
Confidence 35799999999999999999999999999999999999999988876655554442 1344677778889999987
Q ss_pred hhccCC-------------ceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCC----------ccCCC
Q 013210 181 AIVQGR-------------TKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS----------PARLG 236 (447)
Q Consensus 181 ~i~~~~-------------t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~----------~~~~g 236 (447)
.+ .++ -+.|+++...-++|.+.|+++|.++..+|...+|+|+.+ .+..-. ...-.
T Consensus 216 ll-~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~ 294 (467)
T KOG1358|consen 216 LL-PEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITD 294 (467)
T ss_pred hc-cCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccc
Confidence 66 222 246788999999999999999999999999999999998 222111 11114
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHH--HHHHHHhhhhhhhcCCCccHHH---HHHHHccCCcHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLV--NSMMDLHQGALMLLGPTMNPKV---AFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~--~~l~~~~~~~~~~~g~~~~~~~---a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
+|++++|+.-.++.. ||+.+++.-+. +++..... -+.....+.. |..++..+++-++..+.+.....
T Consensus 295 iDiv~~sm~~alas~----GgFc~G~~~i~~hQrLSg~~Y----~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~ 366 (467)
T KOG1358|consen 295 IDIVTASMETALASG----GGFCAGKSFIADHQRLSGSGY----CFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVA 366 (467)
T ss_pred eeeeeeccccccccc----CceeecceeeEeeeeccccce----eeeccCchhhhhhHHHHHHHHhhCcchhhhhhcccc
Confidence 799999999999854 48888854332 22322111 2233333332 22333333333445555555555
Q ss_pred HHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC----HHHHHHHHHHhhcccccccccccccCcc
Q 013210 312 IFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET----EEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 312 ~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~----~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
.+-..|+... +.+... +- .+++.+.+.. .++-..+++.+-+. ++.-|-
T Consensus 367 ~~H~~l~~~s~~~v~~~--~~-----------------SPi~hl~l~~~~~s~e~e~~lL~eivd~------~i~~~~-- 419 (467)
T KOG1358|consen 367 KFHAALSSNSGFIVSGS--PE-----------------SPIIHLQLERSYGSREKEEKLLEEIVDK------CIAEGV-- 419 (467)
T ss_pred ccchhhhcCCceEEecC--cC-----------------CceeeeeecccccchHHHHHHHHHHHHH------HHhhcc--
Confidence 5555665432 233321 22 2367777653 23334444443221 111110
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
++. .+.. +... ..-.-+..|||++. ....++.++...+.+++..
T Consensus 420 -ll~-~a~~----~~~~---e~~~~~pSiri~~~-a~~seeel~ra~~~ik~~~ 463 (467)
T KOG1358|consen 420 -LLT-RAKY----LEKL---ERCPIPPSIRICVS-AGMSEEELERAAELIKEVA 463 (467)
T ss_pred -eeh-hhhh----hhhc---ccCCCCCcEEEEEe-CCCCHHHHHHHHHHHHHHH
Confidence 000 0000 0000 00011357999999 9999999999888887764
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.2e-09 Score=106.91 Aligned_cols=223 Identities=17% Similarity=0.113 Sum_probs=143.4
Q ss_pred ccCCCCchHHHHHHHHHHHhCCCe--EEEeCChHHHHHHHHHHhcCC---------------------------------
Q 013210 93 YSRHFNPTVLNLSRQMAALEGTEA--AYCTASGMSAISSVLMQLCSS--------------------------------- 137 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g~~~--~~~tsggt~A~~~al~~l~~~--------------------------------- 137 (447)
.+......-+++-+.+++++|-+. -.||+|||+||..++......
T Consensus 117 ~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~ 196 (608)
T TIGR03811 117 SSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMD 196 (608)
T ss_pred cCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccc
Confidence 333333333456667788888643 689999999999877643210
Q ss_pred -------------------C------CeEEEeCCCchhHHHHHHhhcCcccCe---eEEEeCCC-----CHHHHHHhhcc
Q 013210 138 -------------------G------GHVVAARTLYGGTHALLTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQ 184 (447)
Q Consensus 138 -------------------g------d~Vi~~~~~y~~~~~~~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~i~~ 184 (447)
| ..++++...|.++...+. + .|+ .++.|+++ |+++|++.|++
T Consensus 197 l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~-i----lGlG~~~vv~VpvD~~~rmd~~~L~~~I~~ 271 (608)
T TIGR03811 197 LLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAAD-I----IGIGLDQVIPVPVDSNYRMDINELEKIIRK 271 (608)
T ss_pred cccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHH-H----cCCCcccEEEeecCCCCcCCHHHHHHHHHH
Confidence 0 057778887988887772 2 343 35666654 89999888732
Q ss_pred ----C-CceEEEEEcCCCCCccccCHHHHHHHH---HhcCC--EEEEeCCCCCCC----CC------c------------
Q 013210 185 ----G-RTKVLYFESISNPTLAVANIPELSRLA---HDKGV--TVVVDNTFSPLV----LS------P------------ 232 (447)
Q Consensus 185 ----~-~t~lV~i~~~~NptG~v~~l~~I~~la---~~~gi--~livD~~~~~~~----~~------~------------ 232 (447)
. .+-+|+....+..+|.+-|+++|+++| +++|+ ++|+|++|+++. .+ |
T Consensus 272 ~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~ 351 (608)
T TIGR03811 272 LAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYG 351 (608)
T ss_pred HHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccccccc
Confidence 1 234566677788999999999999999 66887 699999996532 11 0
Q ss_pred -----------------cCC-CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh-----hh--------hhhcC
Q 013210 233 -----------------ARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----GA--------LMLLG 281 (447)
Q Consensus 233 -----------------~~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-----~~--------~~~~g 281 (447)
..+ .+|-++..+||++..|-. .|++++.++++.+.+..... +. ....|
T Consensus 352 ~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~-~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~leg 430 (608)
T TIGR03811 352 VFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYS-AGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEG 430 (608)
T ss_pred ccccccccccHhHHHHHhcCcCceEEEeCcccccccCCC-eEEEEEeCHHHHHHHhcCcchhccccccCcccccccceec
Confidence 011 589999999999987654 43455556655443321100 00 01122
Q ss_pred CCcc--HHHHHHHHccC----CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 282 PTMN--PKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 282 ~~~~--~~~a~~~~~~~----~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
.... ....|+.++.+ +.+.+.+++..++++++.+.|++.+
T Consensus 431 SR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~ 476 (608)
T TIGR03811 431 SKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLE 476 (608)
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 33445544433 3467788888999999999998864
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-09 Score=99.30 Aligned_cols=279 Identities=15% Similarity=0.153 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHHhCCC--eEEEeC-ChHHHHHHHHH-Hhc----C---C-----CCeEEEeCCCchhHHHHHHhhcCccc
Q 013210 100 TVLNLSRQMAALEGTE--AAYCTA-SGMSAISSVLM-QLC----S---S-----GGHVVAARTLYGGTHALLTHFFPRAC 163 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~--~~~~ts-ggt~A~~~al~-~l~----~---~-----gd~Vi~~~~~y~~~~~~~~~~~~~~~ 163 (447)
-+.++|+.+|+++|++ ++++.. |+-.-+.-++. +++ . | .-+.+++.|.|......++ .+
T Consensus 70 Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E-----~~ 144 (425)
T PF12897_consen 70 GIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITE-----HF 144 (425)
T ss_dssp --HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHH-----HC
T ss_pred ChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHH-----hh
Confidence 4578999999999974 455544 44333333332 221 1 1 1378999999998887774 37
Q ss_pred CeeEEEeCCC----CHHHHHHhhc-cCCceEEEEE-cCCCCCccccCHHHHHHHHH----hcCCEEEEeCCC--CCCCCC
Q 013210 164 NITTTFVDIS----DHEMVNSAIV-QGRTKVLYFE-SISNPTLAVANIPELSRLAH----DKGVTVVVDNTF--SPLVLS 231 (447)
Q Consensus 164 g~~~~~v~~~----d~~~l~~~i~-~~~t~lV~i~-~~~NptG~v~~l~~I~~la~----~~gi~livD~~~--~~~~~~ 231 (447)
|++...|+.+ |.+.+++.+. ++.+|.|++. .-+||||.++.-+-+.++|. ..+..++-|++| ..+.-+
T Consensus 145 Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~ 224 (425)
T PF12897_consen 145 GIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDE 224 (425)
T ss_dssp T-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSS
T ss_pred CcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeecccc
Confidence 8888877754 9999999873 4678888875 45899999998776666663 579999999999 334211
Q ss_pred -c----cC----------CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC
Q 013210 232 -P----AR----------LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI 296 (447)
Q Consensus 232 -~----~~----------~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~ 296 (447)
+ .. -+..++..|.||+-- +|..+ +++..+++-++.+.+..... +....-+++..-...+...
T Consensus 225 ~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf-~GaGv-a~~aaS~~Nl~~~~~~~~~~-tIgpdKvNQLRHvrff~d~ 301 (425)
T PF12897_consen 225 EPRDALLNILDACAKAGNPDRVYVFASTSKITF-PGAGV-AFFAASEANLAWIKKHLSVQ-TIGPDKVNQLRHVRFFKDA 301 (425)
T ss_dssp SS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS--EEEEE-HHHHHHHHHHHHHH--S---HHHHHHHHHHHHSH
T ss_pred ccchhhhHHHHHHHHcCCCCeEEEEeccccccc-CCcce-eeeecCHHHHHHHHHHhcCc-eeCccHHHHHHHHHHhcCh
Confidence 1 11 146789999999876 44446 88988888777776543311 1222234444333333333
Q ss_pred C-cHHHHHHHHHH----HHHH----HHHHHH-hCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHH
Q 013210 297 P-HLGLRMKEHCH----RALI----FARRMK-KLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL 365 (447)
Q Consensus 297 ~-~l~~~~~~~~~----~~~~----l~~~L~-~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l 365 (447)
+ .+...++++.+ +.+. |.+.|. ..+. ....|. .|.+++|...... +.++
T Consensus 302 ~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~-------------------GGYFIsld~~~G~-Akrv 361 (425)
T PF12897_consen 302 EGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPK-------------------GGYFISLDVLDGT-AKRV 361 (425)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---S-------------------BSS-EEEEESTT--HHHH
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCC-------------------CceEEEEecCCCh-HHHH
Confidence 3 44444444322 2222 333333 2333 555554 5779999988653 6677
Q ss_pred HHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC--CCeEEEEeCCCCCHHHHHH
Q 013210 366 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS--AGLVRMSVGYLGTLDQRWS 430 (447)
Q Consensus 366 ~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~--~~~iRiS~g~~~~~~~~i~ 430 (447)
++..+.. |+.-+..|.+ +|. |.+ +.-|||... ....+++-.
T Consensus 362 V~lakeA---GV~LT~AGAt-----fPy---------------g~DP~D~nIRiAPS-~P~leel~~ 404 (425)
T PF12897_consen 362 VELAKEA---GVALTPAGAT-----FPY---------------GKDPRDSNIRIAPS-YPSLEELET 404 (425)
T ss_dssp HHHHHHT---TEE---TTTT-----SGG---------------G--TTS-EEEE--S-SS-HHHHHH
T ss_pred HHHHHHh---CceeCCCCCC-----CCC---------------CCCCCCCcEEecCC-CCCHHHHHH
Confidence 7766653 2222233321 121 222 467999999 766555433
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=105.82 Aligned_cols=295 Identities=13% Similarity=0.128 Sum_probs=174.7
Q ss_pred chHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcC----cccCe-eEEEeC
Q 013210 99 PTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP----RACNI-TTTFVD 171 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~----~~~g~-~~~~v~ 171 (447)
..++-+++..+.+.+-+-++|++||+|||.++|+... .+-..+|+.+..|++........-| +..+. ++.||.
T Consensus 87 ~lv~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VH 166 (452)
T KOG1403|consen 87 ELVQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVH 166 (452)
T ss_pred HHHHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCceeE
Confidence 3445556666666666779999999999999998543 2334688888888887766522111 00111 112221
Q ss_pred ---CC---------------C-----HHHHHHhhcc-----CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEE
Q 013210 172 ---IS---------------D-----HEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTV 219 (447)
Q Consensus 172 ---~~---------------d-----~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~l 219 (447)
.. | .+.+++.+++ ..+.+.+.|+.++-.|.+.| .+++++..+.+|-++
T Consensus 167 VAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~ 246 (452)
T KOG1403|consen 167 VAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVC 246 (452)
T ss_pred ecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeE
Confidence 11 1 1234444421 23456666888888898876 678899999999999
Q ss_pred EEeCCCCCCCC------Cc--cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh-hhhhhhcCCCccHHHHH
Q 013210 220 VVDNTFSPLVL------SP--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGALMLLGPTMNPKVAF 290 (447)
Q Consensus 220 ivD~~~~~~~~------~~--~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~~~~~g~~~~~~~a~ 290 (447)
|.||+|.+|.. .. ..+=.|+++ +.|.+| .|.++ ++++..+++.+.+.... ..+.+..|++.+.+.+.
T Consensus 247 IaDEVQvGFGRvG~hyWafq~y~fiPDIVt--mgKpmG-NGhPV-a~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~l 322 (452)
T KOG1403|consen 247 IADEVQVGFGRVGSHYWAFQTYNFIPDIVT--MGKPMG-NGHPV-AAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGL 322 (452)
T ss_pred Eeehhhhcccccchhhhhhhhhccccchhe--ecccCC-CCCee-eEEeccHHHHHHhccccceehhccCCCchhHHHHH
Confidence 99999955531 11 122346665 899998 67778 89999999998886532 22334556666666555
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------CHHHH
Q 013210 291 ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKA 362 (447)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~~~~~ 362 (447)
+.++.++. +...+..++..++|...|++...+...-+ +..|.|.++.+++. ....+
T Consensus 323 aVm~v~e~-E~Lq~ha~~vG~~L~~lL~~~k~kh~~IG---------------DvRGvGLFiGIdLVkD~~tRtP~tk~A 386 (452)
T KOG1403|consen 323 AVMRVCED-ENLQEHAQQVGEKLEVLLRRLKQKHECIG---------------DVRGVGLFIGIDLVKDRKTRTPDTKEA 386 (452)
T ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhhhcccee---------------ccccceEEEeeeeecccccCCCcHHHH
Confidence 55554332 11122223334444444444322111111 23378889999875 12345
Q ss_pred HHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEE----EEeCCCCCHHHHHHHHHHHHHH
Q 013210 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR----MSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 363 ~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iR----iS~g~~~~~~~~i~~l~~al~~ 438 (447)
..++.+|+. .+++ .+|.-+.. .+.+. ++|. .++.++.+..|.+.|..
T Consensus 387 ~~~v~rlke--~y~V-LlsaDGPh-------------------------~NilKiKPPmCFn-eena~e~v~~ld~iLT~ 437 (452)
T KOG1403|consen 387 HWVVNRLKE--LYRV-LLSADGPH-------------------------RNILKIKPPMCFN-EENADEFVLGLDEILTV 437 (452)
T ss_pred HHHHHHHHH--hhhE-EEecCCCC-------------------------CceeecCCCcccC-hhhHHHHHHHHHHHHHH
Confidence 566777775 2342 33433211 12222 3555 78999999999999986
Q ss_pred hhhc
Q 013210 439 MQDS 442 (447)
Q Consensus 439 ~~~~ 442 (447)
+.+.
T Consensus 438 mee~ 441 (452)
T KOG1403|consen 438 MEER 441 (452)
T ss_pred HHHH
Confidence 6543
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-09 Score=105.65 Aligned_cols=155 Identities=18% Similarity=0.216 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----
Q 013210 100 TVLNLSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----- 173 (447)
...++++..|+.+|++.. ++++|.+.||..++++++.+||.|++...+|.+.+..+. +.|+.+.|+...
T Consensus 71 ~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~gli-----laGa~Pvyl~p~~np~~ 145 (557)
T COG1982 71 PIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLI-----LAGATPVYLEPSRNPLY 145 (557)
T ss_pred cHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHH-----HcCCceEEecCCCCccc
Confidence 457899999999999975 557888889999999999999999999999999887762 267777776543
Q ss_pred ------CHHHHHHhhcc-CCc-eEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCC------ccCCCCe
Q 013210 174 ------DHEMVNSAIVQ-GRT-KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS------PARLGAD 238 (447)
Q Consensus 174 ------d~~~l~~~i~~-~~t-~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~------~~~~g~d 238 (447)
+.+.+++++.+ +.. +++++.+|+ -.|++.++++|.++++.+++++.+|+++ ..+.+. ..+.++|
T Consensus 146 gi~ggI~~~~~~~~l~~~~~~~k~~vitnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~ 224 (557)
T COG1982 146 GIIGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGAD 224 (557)
T ss_pred cccCCCCHHHHHHHHHhChhhheeEEEecCc-cceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCce
Confidence 67888776633 345 788887765 3699999999999999999999999997 333322 1235899
Q ss_pred EEEeCCCccccCCCCeeEEEEEcC
Q 013210 239 VVVHSISKFISGGADIIAGAVCGP 262 (447)
Q Consensus 239 i~~~S~sK~~g~~g~~igG~l~~~ 262 (447)
+++.|.||.+++-. .+..+-.+
T Consensus 225 ~~tqS~HK~l~alS--QaS~iHv~ 246 (557)
T COG1982 225 FVTQSTHKLLAALS--QASMIHVK 246 (557)
T ss_pred EEEechhhhhhhhh--hhHHHhhC
Confidence 99999999998533 43555333
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.4e-12 Score=118.85 Aligned_cols=164 Identities=24% Similarity=0.307 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCc---hhHHHHHHhhcCcccCeeEEEeCCC---CH
Q 013210 102 LNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLY---GGTHALLTHFFPRACNITTTFVDIS---DH 175 (447)
Q Consensus 102 ~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y---~~~~~~~~~~~~~~~g~~~~~v~~~---d~ 175 (447)
..+++.++.+.|+++++++++...|+.+++.++. +|++||++..+- ++.... .+.+.. .|...+.|-.. .+
T Consensus 50 ~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRi-p~vm~~-sGa~lvEVGttN~t~~ 126 (367)
T PF03841_consen 50 AHVEELLCELTGAEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRI-PDVMRQ-SGARLVEVGTTNRTHL 126 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-cccccc-cccccccccccccccc
Confidence 4577889999999999999999999999988775 578899888543 333222 133333 67777666543 57
Q ss_pred HHHHHhhccCCceEEEEEcCCCCC--ccc--cCHHHHHHHHHhcCCEEEEeCCCCC--------CC-----CCccCCCCe
Q 013210 176 EMVNSAIVQGRTKVLYFESISNPT--LAV--ANIPELSRLAHDKGVTVVVDNTFSP--------LV-----LSPARLGAD 238 (447)
Q Consensus 176 ~~l~~~i~~~~t~lV~i~~~~Npt--G~v--~~l~~I~~la~~~gi~livD~~~~~--------~~-----~~~~~~g~d 238 (447)
++.+++| +++|.+++--+++|-. |.. .+++++++++++|++++++|..-+. ++ ....+.|+|
T Consensus 127 ~Dye~AI-~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaD 205 (367)
T PF03841_consen 127 SDYEKAI-TENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGAD 205 (367)
T ss_dssp -----------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-S
T ss_pred ccccccc-cccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCC
Confidence 8899999 8999998777777753 323 4799999999999999999976411 11 123456999
Q ss_pred EEEeCCCccccCCCCeeEEEEEcChHHHHHHHHH
Q 013210 239 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 272 (447)
Q Consensus 239 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~ 272 (447)
++++|..|.+|+|- +|++++++++++++++.
T Consensus 206 lV~fSGdKlLGGPQ---aGiI~Gkk~lI~~lk~~ 236 (367)
T PF03841_consen 206 LVTFSGDKLLGGPQ---AGIIVGKKELIEKLKKH 236 (367)
T ss_dssp EEEEETTSSSSS-S----EEEEEEHHHHHHHHHH
T ss_pred EEEEECCCcCCCCC---eEEEEeCHHHHHHHhhC
Confidence 99999999999886 49999999999988753
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-09 Score=99.53 Aligned_cols=203 Identities=19% Similarity=0.231 Sum_probs=132.5
Q ss_pred cccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHH
Q 013210 60 MSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----G----TEAAYCTASGMSAISSVL 131 (447)
Q Consensus 60 ~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al 131 (447)
|-+..+..|..+..+...++++..-| |.-.|+. ..-+.-.|+.+|++. | .++|++|.|++.|+..++
T Consensus 79 p~lLd~~~fp~Dai~RA~~~L~~~gG---s~GaYS~--SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il 153 (475)
T KOG0258|consen 79 PELLDSPEFPTDAIKRAKRILNDCGG---SLGAYSD--SQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSIL 153 (475)
T ss_pred hhhcCCCCCCHHHHHHHHHHHHhcCC---ccccccc--ccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHH
Confidence 33444444443334777777776532 2223332 233456788888876 3 245999999999999999
Q ss_pred HHhc-CCCCeEEEeCCCchhHHHHHHhhcCcccCeeE-EEeCCC-----CHHHHHHhhc----cCCceEEEEEcCCCCCc
Q 013210 132 MQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITT-TFVDIS-----DHEMVNSAIV----QGRTKVLYFESISNPTL 200 (447)
Q Consensus 132 ~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~-~~v~~~-----d~~~l~~~i~----~~~t~lV~i~~~~NptG 200 (447)
..++ .+.+-|+++-|-|+-|.+.+..+. +..+ .+++.. |.++|++.++ .-+++++++-+|.||||
T Consensus 154 ~l~~~~~~~GvliPiPQYPLYsAti~l~~----~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTG 229 (475)
T KOG0258|consen 154 SLLIAGKKTGVLIPIPQYPLYSATISLLG----GTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTG 229 (475)
T ss_pred HHHhcCCCCceEeecCCCchhHHHHHHhC----CcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccc
Confidence 8765 456889999999998888774322 1122 223321 7888877662 23678999999999999
Q ss_pred ccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCCcc-----------CCC---C----eEEEeCCCccccCCCCeeEEEE
Q 013210 201 AVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------RLG---A----DVVVHSISKFISGGADIIAGAV 259 (447)
Q Consensus 201 ~v~---~l~~I~~la~~~gi~livD~~~~~~~~~~~-----------~~g---~----di~~~S~sK~~g~~g~~igG~l 259 (447)
.+. .+++|.++|++++++++.||+|..-.+... ++| . -+..+|.||.+.+--.--||++
T Consensus 230 qvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYm 309 (475)
T KOG0258|consen 230 QVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYM 309 (475)
T ss_pred hhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCee
Confidence 997 588999999999999999999833222110 111 1 2557788999887533347887
Q ss_pred --Ec-ChHHHHHHHH
Q 013210 260 --CG-PANLVNSMMD 271 (447)
Q Consensus 260 --~~-~~~~~~~l~~ 271 (447)
+. +++..+.+.+
T Consensus 310 Ev~n~~prv~~qi~K 324 (475)
T KOG0258|consen 310 ESLNRDPRVKQQIKK 324 (475)
T ss_pred ecccCChhHHHHHHH
Confidence 22 3444444443
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-10 Score=108.00 Aligned_cols=159 Identities=27% Similarity=0.296 Sum_probs=118.1
Q ss_pred HHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCC-----CchhHHHHHHhhcCcccCeeEEEeCCC---C
Q 013210 103 NLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAART-----LYGGTHALLTHFFPRACNITTTFVDIS---D 174 (447)
Q Consensus 103 ~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~-----~y~~~~~~~~~~~~~~~g~~~~~v~~~---d 174 (447)
.+.+....+.+++.+++++..+.|+..++.++.. +++||++.. .+..+...+ . ..|.++..+... .
T Consensus 72 ~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~-~~EvVis~g~lV~gg~~~v~d~~----~-~aG~~l~EvG~tn~t~ 145 (395)
T COG1921 72 ELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAE-GKEVVVSRGELVEGGAFRVPDII----R-LAGAKLVEVGTTNRTH 145 (395)
T ss_pred HHHHHHhcccchhheeeECCcHHHHHHHHhhhcc-CCeEEEEccccccCCCCChhHHH----H-HcCCEEEEecccCcCC
Confidence 4555666666788999999999999999888765 556666552 334444444 2 268787776543 7
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccc--cCHHHHHHHHHhcCCEEEEeCCCCCCC---C---CccCCCCeEEEeCCCc
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAV--ANIPELSRLAHDKGVTVVVDNTFSPLV---L---SPARLGADVVVHSISK 246 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v--~~l~~I~~la~~~gi~livD~~~~~~~---~---~~~~~g~di~~~S~sK 246 (447)
..+++.+| +++|++++=.+-+|- |.. .++++++++||++|+++++|.+-+... . .....|+|++++|..|
T Consensus 146 ~~d~~~AI-ne~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdK 223 (395)
T COG1921 146 LKDYELAI-NENTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDK 223 (395)
T ss_pred HHHHHHHh-ccCCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecch
Confidence 88999999 888887654443432 433 478899999999999999999864321 1 2245699999999999
Q ss_pred cccCCCCeeEEEEEcChHHHHHHHHH
Q 013210 247 FISGGADIIAGAVCGPANLVNSMMDL 272 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~~~~~~~l~~~ 272 (447)
.+|+|- +|+++++++++++++..
T Consensus 224 llgGPq---aGii~GkKelI~~lq~~ 246 (395)
T COG1921 224 LLGGPQ---AGIIVGKKELIEKLQSH 246 (395)
T ss_pred hcCCCc---cceEechHHHHHHHHhh
Confidence 999884 59999999999888754
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-08 Score=94.06 Aligned_cols=308 Identities=17% Similarity=0.188 Sum_probs=179.7
Q ss_pred cCCCCchhhHhhhcCCCCCCCCccccccccccccccCCH-HHHHHhhcCCCC--CCCCCccccCCCCchHHHHH-HHHHH
Q 013210 35 AAAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEP-ETMRRMFAGELG--PDRDFFIYSRHFNPTVLNLS-RQMAA 110 (447)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~-~~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~l~-~~ia~ 110 (447)
++++.||+..-+--+....+..++ -+-+|-.|+...+ +++-..+.++|. -|...|+-|...-...+.|. ++--+
T Consensus 20 ~l~~~DPev~~ii~~Ek~RQ~~gi--eLIaSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALe 97 (477)
T KOG2467|consen 20 PLEEVDPEVHDIIEKEKERQKRGI--ELIASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALE 97 (477)
T ss_pred chhhcChHHHHHHHHHHHhhhcce--eEeecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHH
Confidence 377778877666543233333333 3456667776665 666666766652 23333322222212233332 23334
Q ss_pred HhCCCe----E-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH--HHhhcCcccCeeEEE-------eCCC---
Q 013210 111 LEGTEA----A-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRACNITTTF-------VDIS--- 173 (447)
Q Consensus 111 l~g~~~----~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~--~~~~~~~~~g~~~~~-------v~~~--- 173 (447)
.++.++ + +-.-||+.||..+..++++|+++|.-.+.-+++.... .... .+ ....-.+ |+..
T Consensus 98 aF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~-kk-ISa~SiyFeSmPYkv~~~TG~ 175 (477)
T KOG2467|consen 98 AFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPT-KK-ISATSIYFESMPYKVDPSTGY 175 (477)
T ss_pred HhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCC-ce-eeeeeeecccCceeeCCCCCc
Confidence 566543 3 3345899999999999999999998766544433211 1000 01 1111111 2211
Q ss_pred -CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCC-----CCccCCCCeEEEeCCCc
Q 013210 174 -DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISK 246 (447)
Q Consensus 174 -d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~-----~~~~~~g~di~~~S~sK 246 (447)
|.|.||+....-++++|+.-.. -.-...|.+++.++|.+.|+++.+|-+| .++. -+|.++ +|+|+.+.||
T Consensus 176 IDYD~Le~~A~~frPk~iiaG~S--aY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey-~DiVTTTTHK 252 (477)
T KOG2467|consen 176 IDYDKLEKTATLFRPKLIIAGTS--AYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY-CDIVTTTTHK 252 (477)
T ss_pred eehHHHHHHHHhcCCcEEEeccc--cchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc-cceeeccccc
Confidence 7888887653457788776332 2335678999999999999999999998 5443 355554 8999999999
Q ss_pred cccCCCCeeEEEEEcCh---------------HHHHHHHHHhhhhhhhcCCCccHHHHHH-HHcc--CCcHHHHHHHHHH
Q 013210 247 FISGGADIIAGAVCGPA---------------NLVNSMMDLHQGALMLLGPTMNPKVAFE-LSER--IPHLGLRMKEHCH 308 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~~---------------~~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~--~~~l~~~~~~~~~ 308 (447)
.+-+| | ||.+.-++ ++-+++...-. .....|+.....++.+ ++.. -..+.+..++..+
T Consensus 253 sLRGP--R-g~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVF-P~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~ 328 (477)
T KOG2467|consen 253 SLRGP--R-GAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVF-PGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLK 328 (477)
T ss_pred cccCC--c-ceeEEEeccCCcCCCCCCCcceechhhhhhhhcc-ccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 99876 4 46664332 12223332111 1112333333333332 2222 2446777888899
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013210 309 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 371 (447)
Q Consensus 309 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~l~~~l~~ 371 (447)
++..|++.|.+.|+++..-+...| ++-+++. +...++.+++.+.+
T Consensus 329 Nakala~~l~~~Gy~lvtgGTDnH------------------lvLvDLr~~G~dGarvE~vle~~~I 377 (477)
T KOG2467|consen 329 NAKALASALISRGYKLVTGGTDNH------------------LVLVDLRPKGVDGARVEKVLELCHI 377 (477)
T ss_pred HHHHHHHHHHHcCceEecCCccce------------------EEEEeccccCCchHHHHHHHHHhhh
Confidence 999999999999997765442221 6667765 34457778877764
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-09 Score=100.51 Aligned_cols=222 Identities=19% Similarity=0.203 Sum_probs=145.6
Q ss_pred chHHHHHHHHHHHhCCCeEEEe-CChHHHHHHHHHHhc----CCC----CeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 99 PTVLNLSRQMAALEGTEAAYCT-ASGMSAISSVLMQLC----SSG----GHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~~~t-sggt~A~~~al~~l~----~~g----d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
..+.+|++.+.++.|.+.+-+- ++|.++=.+.++.+. ..| +.+++++..|+....+. ...|.+|+.
T Consensus 109 ~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASA-----am~G~~VV~ 183 (496)
T COG1003 109 ELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASA-----AMAGFKVVV 183 (496)
T ss_pred HHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhH-----hhcCceEEE
Confidence 4567888999999999887655 566666555554432 223 57889999998877776 247999999
Q ss_pred eCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccc-cCHHHHHHHHHhcCCEEEEeCCC--CCC-CCCccCCCCeEE
Q 013210 170 VDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDNTF--SPL-VLSPARLGADVV 240 (447)
Q Consensus 170 v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v-~~l~~I~~la~~~gi~livD~~~--~~~-~~~~~~~g~di~ 240 (447)
|+.+ |+++|++.+ .+++.++.+++||. .|.. .++.+|+++.|++|..+..|.+- +-+ ..+|-++|.|++
T Consensus 184 V~~~~~G~VDlddLk~k~-~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~ 261 (496)
T COG1003 184 VKCDENGNVDLDDLRAKA-EDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVV 261 (496)
T ss_pred EecCCCCCccHHHHHHHh-ccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceE
Confidence 9876 999999999 78999999999874 4544 47999999999999999999986 222 257889999999
Q ss_pred EeCCCccccCC---CCeeEEEEEcChHHHHHHHH---Hhhh---------------hhhhcCCCccHHHHHHHHcc--CC
Q 013210 241 VHSISKFISGG---ADIIAGAVCGPANLVNSMMD---LHQG---------------ALMLLGPTMNPKVAFELSER--IP 297 (447)
Q Consensus 241 ~~S~sK~~g~~---g~~igG~l~~~~~~~~~l~~---~~~~---------------~~~~~g~~~~~~~a~~~~~~--~~ 297 (447)
=.-+||.|+.| |..=.|=+..+.++...+-. .+.. .....|+......+|.-++. .+
T Consensus 262 HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~ 341 (496)
T COG1003 262 HLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGAD 341 (496)
T ss_pred EeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHH
Confidence 99999998633 11111445544444332211 0000 00112222222234443332 23
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGLKVLYPG 328 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~ 328 (447)
.+...-+.-.-+++++..+|+.. +++.|.+
T Consensus 342 GL~~ase~AvLNANYia~rL~~~-y~~~y~~ 371 (496)
T COG1003 342 GLKQASEVAVLNANYIARRLKGY-YPVPYTG 371 (496)
T ss_pred HHHHHHHHHHHhHHHHHHHhhhc-CccccCC
Confidence 34444455567888999999862 3444433
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-08 Score=99.22 Aligned_cols=343 Identities=11% Similarity=0.061 Sum_probs=195.9
Q ss_pred hhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe---E
Q 013210 41 PAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA---A 117 (447)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~---~ 117 (447)
-+-++++-....+.+ .--.++..+.+...++...+....-+++ ||.....|+-. ...-.+.-..++.++++.. -
T Consensus 65 ~v~~~i~~~~~ld~~-~~~~~vS~~v~~~~~~~~~l~~~~~~k~-N~l~~d~fp~~-~~~e~~~Vnm~~~L~~~~~~~~g 141 (491)
T KOG1383|consen 65 AVLELINDELMLDGN-PRLGLASGVVYWGEPELDKLIMEAYNKF-NPLHPDEFPVV-RKLEAECVNMIANLFNAPSDSCG 141 (491)
T ss_pred HHHHHHHHHhccCCC-cccCeeeEEEecCCcchhhHHHHHHhhc-CccCccccchh-HHHHHHHHHHHHHHhcCCccccC
Confidence 345555544333322 1222333444454455533332222233 55443333321 1122334455677777644 3
Q ss_pred EEeCChHHHHHHHHHHhc---C--CC---CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC------CHHHHHHhhc
Q 013210 118 YCTASGMSAISSVLMQLC---S--SG---GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIV 183 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~---~--~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~ 183 (447)
.-|.||++|+.++-+... . .| ..|+++.. .+..++.+... ++++++.|+.+ |+..+.+.+
T Consensus 142 ~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~----v~~a~eK~a~y-f~v~l~~V~~~~~~~~~D~~k~~~~i- 215 (491)
T KOG1383|consen 142 CGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQN----VHAAFEKAARY-FEVELREVPLDEGDYRVDPGKVVRMI- 215 (491)
T ss_pred ccccccchHHHHHHHHHHHHHHhccCCCCccccchHH----HHHHHHHHHhh-EEEEEEeeeccccceEecHHHHHHHh-
Confidence 568899999665554421 1 12 23444444 44445444433 77888887776 899999999
Q ss_pred cCCceEEEEEcCCCCCccccCHHHHHHHHHh-cCCEEEEeCCCCCCCCC-------ccCC---CCeEEEeCCCcccc-CC
Q 013210 184 QGRTKVLYFESISNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPLVLS-------PARL---GADVVVHSISKFIS-GG 251 (447)
Q Consensus 184 ~~~t~lV~i~~~~NptG~v~~l~~I~~la~~-~gi~livD~~~~~~~~~-------~~~~---g~di~~~S~sK~~g-~~ 251 (447)
+++|.+|+.+.++-|+|.+-|+++|.++..+ +++.+|+|.+-++|... +.++ ++.-...+.||+-- ++
T Consensus 216 ~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~ 295 (491)
T KOG1383|consen 216 DENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPA 295 (491)
T ss_pred ccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeec
Confidence 8899999999999999999999999999999 99999999998766441 1222 56677888999754 44
Q ss_pred CCeeEEEE-EcChHHHH-HHH---HHh---hhhhhhcCCCcc--HHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHh
Q 013210 252 ADIIAGAV-CGPANLVN-SMM---DLH---QGALMLLGPTMN--PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKK 319 (447)
Q Consensus 252 g~~igG~l-~~~~~~~~-~l~---~~~---~~~~~~~g~~~~--~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~ 319 (447)
| + ||+ +..+++.. .+. .+. ..+.+..|+-+. ..++|+.+. +.+...+..++..+++..|++.+++
T Consensus 296 G--~-~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~ 372 (491)
T KOG1383|consen 296 G--S-SWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIEN 372 (491)
T ss_pred C--c-EEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4 3 555 55554432 111 010 011112222222 223444333 3345667888899999999999988
Q ss_pred CCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccCcccccccccccc
Q 013210 320 LGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 396 (447)
Q Consensus 320 ~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~ 396 (447)
.+. .+..+. .++|.+.+. -+..++-+.|.. +|.+.-. ...|+
T Consensus 373 i~~i~i~gkp----------------------~vs~~~~~s~~~~i~elsd~l~~---~GW~lna-------lq~P~--- 417 (491)
T KOG1383|consen 373 IKGIKIVGKP----------------------LVSFILFGSNDVNIFELSDLLRK---KGWILNA-------LQFPA--- 417 (491)
T ss_pred cccceecCCC----------------------cEEEEEccCCccchhhhhHHHHh---cCcCccc-------cCCCC---
Confidence 654 444332 455554421 123344455553 3332211 11122
Q ss_pred CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcC
Q 013210 397 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSG 443 (447)
Q Consensus 397 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~ 443 (447)
++.-...|+.+- .+-.++++.++.++++++...+
T Consensus 418 ------------a~Hi~vt~~~~~-~~~A~~~v~Di~~~~~el~~~p 451 (491)
T KOG1383|consen 418 ------------AIHICVTRVHAR-EDVADRFVADIRKVVEELKSLP 451 (491)
T ss_pred ------------ceEEEEEeeecc-HHHHHHHHHHHHHHHHHHHhCC
Confidence 111244677666 4556889999999999987654
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-09 Score=99.98 Aligned_cols=288 Identities=15% Similarity=0.157 Sum_probs=150.5
Q ss_pred chHHHHHHHHHHHh---C-C----CeEEEeCChHHHHHHHHHHhcCC----C--CeEEEeCCCchhHHHHHHhhcCcccC
Q 013210 99 PTVLNLSRQMAALE---G-T----EAAYCTASGMSAISSVLMQLCSS----G--GHVVAARTLYGGTHALLTHFFPRACN 164 (447)
Q Consensus 99 ~~~~~l~~~ia~l~---g-~----~~~~~tsggt~A~~~al~~l~~~----g--d~Vi~~~~~y~~~~~~~~~~~~~~~g 164 (447)
-...+|++.|.+|. | + ..++|..|+|+-+++++.+|... + -+|+...|.|+.+.... .++.. ..
T Consensus 43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt-~~f~s-~~ 120 (363)
T PF04864_consen 43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQT-DFFDS-RL 120 (363)
T ss_dssp TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHC-CCT-B-TT
T ss_pred eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHH-Hhccc-cC
Confidence 34467888888775 3 1 34999999999999999988533 1 37999999999887665 44432 22
Q ss_pred eeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCcc--CCCCeEEEe
Q 013210 165 ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPA--RLGADVVVH 242 (447)
Q Consensus 165 ~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~--~~g~di~~~ 242 (447)
.+..- |...+...- ++.+-+=++++||||.|.+.. .+++.-+..+|-|-+|-.-.+.|. ..+-|++++
T Consensus 121 y~w~G----da~~~~~~~-~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiMLF 190 (363)
T PF04864_consen 121 YKWAG----DASNFKNSD-NPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYWPHYTPITAPADHDIMLF 190 (363)
T ss_dssp EEEEE----ECCCGTT-S--CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-B--SEEEE
T ss_pred ccccc----cHHhhccCC-CCCCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeecccccccCCCCCCceEEE
Confidence 23222 111111100 123444577899999998742 123445667899999843333332 235699999
Q ss_pred CCCccccCCCCeeEEEE-EcChHHHHHHHHHhhhhhhhcCCC-ccHHHHHHHHc----cCC------c-HHHHHHHHHHH
Q 013210 243 SISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSE----RIP------H-LGLRMKEHCHR 309 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~----~~~------~-l~~~~~~~~~~ 309 (447)
|+||.-|-.|.|+ ||. +.++++.+++..+..-. ..|.+ -++.-|..++. +.. . +.--.+.+.++
T Consensus 191 T~SK~TGHAGSR~-GWAlVKD~~Va~kM~~y~~ln--TiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~R 267 (363)
T PF04864_consen 191 TLSKLTGHAGSRF-GWALVKDEEVAKKMTKYMELN--TIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRER 267 (363)
T ss_dssp EHHHHCS-GGG-E-EEEEES-HHHHHHHHHHHHHH--CSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHH
T ss_pred EEecccCcccccc-ceeeecCHHHHHHHHHHHHHh--cccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHH
Confidence 9999999999999 665 56778888887665411 23322 22333333222 111 1 22233455666
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHH-HHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccCcc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHEL-LKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l-~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
-.+|.+.+.... +...|.++ |++.- .++... ....+.|+.... .+++..+++..++.+ ..|
T Consensus 268 W~~L~~~~~~S~-rFSLq~~~--~~yC~ff~~~~~---psPafAWlkCe~eed~DC~~~l~~~~I~t-------r~G--- 331 (363)
T PF04864_consen 268 WEKLRAAVSASK-RFSLQKFS--PQYCNFFKRVRE---PSPAFAWLKCEREEDEDCYAVLREAKIIT-------RSG--- 331 (363)
T ss_dssp HHHHHHHHCCSS-SEEE---S--CEEETTTTCEEE------SEEEEEESSCGGSSHHHHHHCTTEEE-------EEG---
T ss_pred HHHHHHHHHhcC-ceecCcCC--chhccccccccC---CCCCeEEEecCCcccccHHHHHHhCCccc-------CCC---
Confidence 677777776543 22222221 11000 000000 134589999983 346778877666521 222
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
. ..|.+...+|||+- +.++..+.|.+-|..+
T Consensus 332 -------~------------~fga~~ryVRlSml---~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 332 -------V------------LFGADSRYVRLSML---KRDDDFDQLLERLSKL 362 (363)
T ss_dssp -------G------------GGTS-TTEEEEESS---S-HHHHHHHHHHHHCC
T ss_pred -------C------------ccCCCCCeEEEecc---CCHHHHHHHHHHHHhh
Confidence 1 13566789999998 6677677776666543
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-08 Score=106.00 Aligned_cols=271 Identities=13% Similarity=0.080 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc-C--CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCH
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC-S--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~-~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~ 175 (447)
+-+++..|++|.|.+ ++-...++|++-.+++++.. . +.++|+++...|+.+...++..... .|++++.
T Consensus 126 l~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~-~g~~i~~------ 198 (954)
T PRK12566 126 LLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEG-FGFELVV------ 198 (954)
T ss_pred HHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhc-CCcEEEE------
Confidence 457888999999976 44555666665554444432 2 2468999999999999998766654 7888775
Q ss_pred HHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC---CCCCCCccCCCCeEEEeCCC-----cc
Q 013210 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF---SPLVLSPARLGADVVVHSIS-----KF 247 (447)
Q Consensus 176 ~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~---~~~~~~~~~~g~di~~~S~s-----K~ 247 (447)
+++++.+ .+++..|++.+|| -.|.+.|+++|.+++|++|+++++ .+- -.+.-.|-++|+||++++.. =.
T Consensus 199 ~~~~~~~-~~~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~~~-~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~ 275 (954)
T PRK12566 199 DAVDNLA-AHAVFGALLQYPD-THGEIRDLRPLIDQLHGQQALACV-AADLLSLLVLTPPGELGADVVLGSTQRFGVPMG 275 (954)
T ss_pred cchhhcC-CCCEEEEEEECCC-CceEEccHHHHHHHHHHcCCEEEE-EeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCC
Confidence 3344455 5678899999986 589999999999999999998663 332 23345688899999988543 33
Q ss_pred ccCCCCeeEEEEEcChHHHHHHH-------------------------HHhhhhhhhcCCCccHH-----HHHHHHccCC
Q 013210 248 ISGGADIIAGAVCGPANLVNSMM-------------------------DLHQGALMLLGPTMNPK-----VAFELSERIP 297 (447)
Q Consensus 248 ~g~~g~~igG~l~~~~~~~~~l~-------------------------~~~~~~~~~~g~~~~~~-----~a~~~~~~~~ 297 (447)
||||. +|++..++++...+- .+|..-.++.-++.... ..++...+-+
T Consensus 276 ~GGP~---ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~ 352 (954)
T PRK12566 276 YGGPH---AAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPE 352 (954)
T ss_pred CCCCC---eeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChH
Confidence 44443 499988887766441 01111101111111111 1122333434
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGF 377 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~ 377 (447)
.+.+.-++...++.++++.|.+.|+++.... . ++ .+.+.+.. . +..++.+....
T Consensus 353 Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~~-----f-------F~-------~~~v~~~~-~-~~~~~~~a~~~----- 406 (954)
T PRK12566 353 GLKRIAQRVHRLTAILAAGLEAKGIKRLNRH-----F-------FD-------TLTLEVGG-A-QAAIIESAEAA----- 406 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCC-----c-------cc-------eEEEEccC-C-HHHHHHHHHHC-----
Confidence 4555566678888899999988776554321 0 00 44555531 2 34444443321
Q ss_pred ccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 378 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 378 ~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
.+++. -++++.|.||+. ..++.+++++|.+++.
T Consensus 407 -~~n~r-------------------------~~~~~~~~~s~d-e~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 407 -RINLR-------------------------ILGRGRLGVSLD-ETCDEATVARLFDIFL 439 (954)
T ss_pred -CCeeE-------------------------EeCCCeEEEEeC-CCCCHHHHHHHHHHhc
Confidence 22222 113466889999 7777888888887774
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-07 Score=87.11 Aligned_cols=236 Identities=13% Similarity=0.073 Sum_probs=134.9
Q ss_pred EEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----CHHHHHHhhccCCce-EE
Q 013210 118 YCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTK-VL 190 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~i~~~~t~-lV 190 (447)
+-+-|||.|+..+..-+. -....|-+++|+|...+..+....-. .=....+++.. |++.+...++..... .+
T Consensus 103 vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~-tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~ 181 (410)
T KOG1412|consen 103 VQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFT-TVATYPYWDAENKCVDLEGFLSDLESAPEGSII 181 (410)
T ss_pred eeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCc-eeeeeeeecCCCceecHHHHHHHHhhCCCCcEE
Confidence 556789999988875442 23567999999999998888532111 01234555544 788887777433333 33
Q ss_pred EEEc-CCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCC-CCcc----------CCCC-eEEEeCCCccccCCCCe
Q 013210 191 YFES-ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLV-LSPA----------RLGA-DVVVHSISKFISGGADI 254 (447)
Q Consensus 191 ~i~~-~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~-~~~~----------~~g~-di~~~S~sK~~g~~g~~ 254 (447)
++.. .+||||.-.. ..+|++..++++.+.+.|-+|.++. .++. +.|. -+++.||+|-+|..+.|
T Consensus 182 iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneR 261 (410)
T KOG1412|consen 182 ILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNER 261 (410)
T ss_pred eeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhccccccc
Confidence 4433 4899998864 5577777788999999999995543 2322 1133 58999999999999999
Q ss_pred eEEEE---EcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc------HHHHHH----HHHHHHHHHHHHHHhCC
Q 013210 255 IAGAV---CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH------LGLRMK----EHCHRALIFARRMKKLG 321 (447)
Q Consensus 255 igG~l---~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~------l~~~~~----~~~~~~~~l~~~L~~~~ 321 (447)
+ |.+ +.++..+..+.....-..+..-..+....|..+..-+.+ ....++ ++.+.|..|++.|..+
T Consensus 262 v-Gnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL- 339 (410)
T KOG1412|consen 262 V-GNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVAL- 339 (410)
T ss_pred c-cceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9 654 334555544432211111122223333344333333322 111222 3445555555555544
Q ss_pred CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 322 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 322 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
..||- |..+- ..-||+++.=-++...+.+.+....
T Consensus 340 ---~TPGt--------WDHI~----~QiGMFSyTGLtp~qV~~li~~h~v 374 (410)
T KOG1412|consen 340 ---KTPGT--------WDHIT----QQIGMFSYTGLTPAQVDHLIENHKV 374 (410)
T ss_pred ---CCCCc--------HHHHH----hhccceeecCCCHHHHHHHHHhceE
Confidence 23441 11111 1345777775466666666665553
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.6e-06 Score=79.51 Aligned_cols=254 Identities=13% Similarity=0.141 Sum_probs=146.2
Q ss_pred cccCCCCchHHHHHHHHHHHhC----C----------C-eEEEeCChHHHHHHHHHHhc-------CCC-----------
Q 013210 92 IYSRHFNPTVLNLSRQMAALEG----T----------E-AAYCTASGMSAISSVLMQLC-------SSG----------- 138 (447)
Q Consensus 92 ~~~r~~~~~~~~l~~~ia~l~g----~----------~-~~~~tsggt~A~~~al~~l~-------~~g----------- 138 (447)
-++-.+.|...+||..+-++++ - + --++-.++++++..++.+.. +.+
T Consensus 102 GFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~ 181 (511)
T KOG0628|consen 102 GFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLA 181 (511)
T ss_pred cceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhh
Confidence 3555678999999977666653 1 1 14666778899888876542 112
Q ss_pred CeE-EEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccC----CceEEEEEcCCCCCccc--cCHH
Q 013210 139 GHV-VAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG----RTKVLYFESISNPTLAV--ANIP 206 (447)
Q Consensus 139 d~V-i~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~----~t~lV~i~~~~NptG~v--~~l~ 206 (447)
+-| -+++..|.+..... ...|++.+.++.+ +.+.|+++|+++ -+-.+++-+. ..||.+ -+++
T Consensus 182 ~lV~Y~SDqahssveka~-----~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~-GTT~~ca~D~l~ 255 (511)
T KOG0628|consen 182 RLVAYCSDQAHSSVEKAC-----LIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATL-GTTSSCAFDELE 255 (511)
T ss_pred hheEEecCcccchHHHhH-----hhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEee-cCccccccccHH
Confidence 223 35566666665543 1257778887766 678888888432 2334444332 234444 4799
Q ss_pred HHHHHHHhcCCEEEEeCCCCCCCC-----CccCC---CCeEEEeCCCccccCCCCeeEEEEEcC----------hHHHHH
Q 013210 207 ELSRLAHDKGVTVVVDNTFSPLVL-----SPARL---GADVVVHSISKFISGGADIIAGAVCGP----------ANLVNS 268 (447)
Q Consensus 207 ~I~~la~~~gi~livD~~~~~~~~-----~~~~~---g~di~~~S~sK~~g~~g~~igG~l~~~----------~~~~~~ 268 (447)
+|..+|+++|+++|+|++|++-.+ +..-- .+|-+....||++-..-+...=|+-.. +..++.
T Consensus 256 elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h 335 (511)
T KOG0628|consen 256 ELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKH 335 (511)
T ss_pred HhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcc
Confidence 999999999999999999943321 11111 257777888888876654321122111 111110
Q ss_pred -HH----HHhhhhhhhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHH
Q 013210 269 -MM----DLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKS 340 (447)
Q Consensus 269 -l~----~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~ 340 (447)
.. .++. +....|-.....-.|..++ +.+.+.+.++++.++++.+.+.+.+-+. ++..|.
T Consensus 336 ~~~~~~~Dyrh-wqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~------------ 402 (511)
T KOG0628|consen 336 AYQGSAPDYRH-WQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKR------------ 402 (511)
T ss_pred hhhccCCCccc-cccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeccc------------
Confidence 00 0111 1112222233334444444 3466777777777777777776655433 444332
Q ss_pred HhccCCCcCcEEEEEeCC-HHHHHHHHHHhhc
Q 013210 341 MANKEYGFGGLLCLDMET-EEKANRLMNYLQN 371 (447)
Q Consensus 341 ~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~ 371 (447)
.=++++|.+++ .+..+.|++++..
T Consensus 403 -------~lgLvcFRlk~~N~~ne~Ll~~in~ 427 (511)
T KOG0628|consen 403 -------ILGLVCFRLKGDNEINEALLNRLNS 427 (511)
T ss_pred -------ccceeEEeecCCcHHHHHHHHHHHh
Confidence 22389999983 4456778888875
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-06 Score=83.30 Aligned_cols=212 Identities=10% Similarity=0.060 Sum_probs=133.9
Q ss_pred HHHHHHhCC---CeEEEeCChHHHHHHHHHHhcC---C-----C-----Ce-EEEeCCCchhHHHHHHhhcCcccC-eeE
Q 013210 106 RQMAALEGT---EAAYCTASGMSAISSVLMQLCS---S-----G-----GH-VVAARTLYGGTHALLTHFFPRACN-ITT 167 (447)
Q Consensus 106 ~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~---~-----g-----d~-Vi~~~~~y~~~~~~~~~~~~~~~g-~~~ 167 (447)
.++-++.|- .+-+|++||+-+|..++....- | | +- +.+++.+|.++..... ++. .| -.+
T Consensus 148 ~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa-~lg--~gtd~c 224 (510)
T KOG0629|consen 148 AKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAA-FLG--LGTDHC 224 (510)
T ss_pred HHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHH-Hhc--cCCcee
Confidence 344444443 2579999999999888764321 1 2 22 3456677777766652 222 23 345
Q ss_pred EEeCCC-----CHHHHHHhhcc--CC---ceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccC--
Q 013210 168 TFVDIS-----DHEMVNSAIVQ--GR---TKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPAR-- 234 (447)
Q Consensus 168 ~~v~~~-----d~~~l~~~i~~--~~---t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~-- 234 (447)
..|+.+ ++++||+.|.. .+ +-+|..+..+...|..-||+.|+++|++|+.++|||+++ +++..+...
T Consensus 225 ~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~ 304 (510)
T KOG0629|consen 225 IKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRH 304 (510)
T ss_pred EEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHh
Confidence 566655 78888887622 12 345666666667788889999999999999999999999 445443221
Q ss_pred -C----CCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhh-----------------hhhcCCCccHHHHHH
Q 013210 235 -L----GADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGA-----------------LMLLGPTMNPKVAFE 291 (447)
Q Consensus 235 -~----g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~-----------------~~~~g~~~~~~~a~~ 291 (447)
+ .++-++.+.||++|.+-. . ++...+ +.++.+.......+ ....|-....+--|.
T Consensus 305 kl~Giera~SvtwnpHK~~gaplq-C-sa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWl 382 (510)
T KOG0629|consen 305 KLTGIERANSVTWNPHKLMGAPLQ-C-SAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWL 382 (510)
T ss_pred hccCccccCceeecHHHhhcCcch-h-hHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHH
Confidence 1 478999999999996643 2 333333 33444332211100 112232333444455
Q ss_pred HHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 292 LSE--RIPHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 292 ~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
... +...+...+++..++++++.+.|++.+.
T Consensus 383 mwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~ 415 (510)
T KOG0629|consen 383 MWKAKGTQGFEAQVDKCLRLAEYLYDRLREREG 415 (510)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 433 4556888999999999999999998865
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-05 Score=75.08 Aligned_cols=236 Identities=17% Similarity=0.162 Sum_probs=135.5
Q ss_pred HHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCC-----CCeEEEeCCC
Q 013210 73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSS-----GGHVVAARTL 147 (447)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~-----gd~Vi~~~~~ 147 (447)
.+.+.+++.+. -.|+. +.....|+..+.+.+|-+.++-|.-|-.|=+..+..++++ |.+.++++..
T Consensus 62 ~~qwaamm~GD-------EAYag--srs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~ 132 (471)
T COG3033 62 DKQWAAMMRGD-------EAYAG--SRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNY 132 (471)
T ss_pred HHHHHHHhccc-------hhhcc--cccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCccccccccc
Confidence 34455566553 23443 3344678999999999999999999988888877766654 4455555555
Q ss_pred chhHHHHHHhhcCcccCeeEEEeCCC---------------CHHHHHHhhcc---CCceEEEEEcCCCCC-cccc---CH
Q 013210 148 YGGTHALLTHFFPRACNITTTFVDIS---------------DHEMVNSAIVQ---GRTKVLYFESISNPT-LAVA---NI 205 (447)
Q Consensus 148 y~~~~~~~~~~~~~~~g~~~~~v~~~---------------d~~~l~~~i~~---~~t~lV~i~~~~Npt-G~v~---~l 205 (447)
|..+...-.. + .|..++-+..+ |++.|++.|.. +++..|++.-.+|.. |... ++
T Consensus 133 ~FdTTr~h~~---~-ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~ 208 (471)
T COG3033 133 HFDTTRGHIQ---I-NGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANM 208 (471)
T ss_pred eecchhHHHH---h-cCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhH
Confidence 5443332211 1 23333222111 88999998832 356666665444444 4433 57
Q ss_pred HHHHHHHHhcCCEEEEeCCC----CCCCC--Cc-------cCC------CCeEEEeCCCccccCCCCeeEEEEEcChH--
Q 013210 206 PELSRLAHDKGVTVVVDNTF----SPLVL--SP-------ARL------GADVVVHSISKFISGGADIIAGAVCGPAN-- 264 (447)
Q Consensus 206 ~~I~~la~~~gi~livD~~~----~~~~~--~~-------~~~------g~di~~~S~sK~~g~~g~~igG~l~~~~~-- 264 (447)
+++.++|++|++.++.|.+- +.|.. .+ .+. -+|-.+.|.-|---.. |||+++.+++
T Consensus 209 r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvn---mGGfl~~~D~~~ 285 (471)
T COG3033 209 KAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVN---MGGFLCFKDDSF 285 (471)
T ss_pred HHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceec---cccEEEecCccH
Confidence 89999999999999999884 22211 00 000 3688888988875543 7899987654
Q ss_pred --HHHHHHHH---hhhhhhhcCCCccHHHHHH-HHc-cC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013210 265 --LVNSMMDL---HQGALMLLGPTMNPKVAFE-LSE-RI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPG 328 (447)
Q Consensus 265 --~~~~l~~~---~~~~~~~~g~~~~~~~a~~-~~~-~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~ 328 (447)
+...++.. ..+..+..|..-.-..+.+ .++ .+ .++..|+ ...++|.+.|.+.|..+..|.
T Consensus 286 fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv----~Qv~YL~~~l~~~GVpi~~pa 354 (471)
T COG3033 286 FDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRV----AQVQYLADGLEEAGVPIVQPA 354 (471)
T ss_pred HHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHH----HHHHHHHHHHHhcCCeeEecC
Confidence 44444332 1111111221111122222 111 22 2333444 445678889998888666553
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-06 Score=77.08 Aligned_cols=180 Identities=18% Similarity=0.167 Sum_probs=102.6
Q ss_pred CHHHHHHhhcc-----CCceEEEEEcCCCCCcccc--C--HHHHHHHHHhcCCEEEEeCCCCCCCC--C-------ccCC
Q 013210 174 DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVA--N--IPELSRLAHDKGVTVVVDNTFSPLVL--S-------PARL 235 (447)
Q Consensus 174 d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~--~--l~~I~~la~~~gi~livD~~~~~~~~--~-------~~~~ 235 (447)
.++++|+.|.+ ..+.++++|.++++.|.-. | .+.|.+++++||+.+|+||+|++... . -++.
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~ 333 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDS 333 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCC
Confidence 35667766632 2567899999999999775 2 78999999999999999999944321 1 1223
Q ss_pred CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 013210 236 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 236 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~ 315 (447)
..|+++ |||=+-. ||+.. +++++.. ..++. +.++.|-+.-......+...++. ...++....-.+.|..
T Consensus 334 PpD~vT--FSKK~q~-----gGffh-~~~frpn-~pYri-fNTWmGdP~k~lll~~vv~~I~~-~~Ll~n~~~vG~~l~~ 402 (484)
T KOG1405|consen 334 PPDVVT--FSKKFQT-----GGFFH-DEEFRPN-EPYRI-FNTWMGDPSKNLLLEEVVQEIKR-EDLLNNVAHVGKALLK 402 (484)
T ss_pred Ccccee--hhhhhhc-----Ccccc-CcccCCC-chHHH-hhhhcCChHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence 578877 7787763 36543 3333211 01121 11234433222222222222211 1122333344445555
Q ss_pred HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccC
Q 013210 316 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 316 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
.|.++. -.+|+.- +...|.|-++++.+++...-..|+..++. .++.+||
T Consensus 403 gL~~Lq--~~~p~~~------------~~~RGrGTF~a~d~ps~~~Rdk~i~~~~~------nGv~~GG 451 (484)
T KOG1405|consen 403 GLLELQ--AKYPGKI------------NNLRGRGTFIAWDCPSGSIRDKLILIARL------NGVNLGG 451 (484)
T ss_pred HHHHHH--HhCchhh------------hcccccceEEEEeCCChHHHHHHHHHHHH------cCceecc
Confidence 554431 1233311 12237899999999987767788888876 4667774
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-05 Score=77.11 Aligned_cols=150 Identities=14% Similarity=0.213 Sum_probs=94.8
Q ss_pred CeEEEeCChHH-HHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--------CHHHHHHhhc
Q 013210 115 EAAYCTASGMS-AISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIV 183 (447)
Q Consensus 115 ~~~~~tsggt~-A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~i~ 183 (447)
..+++++-+|- ++.+++.++. ..++.|+.+...|.+.+..+. . .|.++..|+.. |++.+++.++
T Consensus 75 ~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~----~-AGl~~~vV~~~~~~d~l~td~~~ie~~i~ 149 (389)
T PF05889_consen 75 KSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIE----R-AGLEPVVVENVLEGDELITDLEAIEAKIE 149 (389)
T ss_dssp CEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHH----H-TT-EEEEE-EEEETTEEEEHHHHHHHHHH
T ss_pred cceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHH----h-cCCeEEEeeccCCCCeeeccHHHHHHHHH
Confidence 45777765543 3445555553 457899999999888777763 2 67777776632 7788888773
Q ss_pred c--CCceEEEEEcCCCCCccccC-HHHHHHHHHhcCCEEEEeCCCCCCC---C----CccCC-CCeEEEeCCCccccCCC
Q 013210 184 Q--GRTKVLYFESISNPTLAVAN-IPELSRLAHDKGVTVVVDNTFSPLV---L----SPARL-GADVVVHSISKFISGGA 252 (447)
Q Consensus 184 ~--~~t~lV~i~~~~NptG~v~~-l~~I~~la~~~gi~livD~~~~~~~---~----~~~~~-g~di~~~S~sK~~g~~g 252 (447)
+ ++..+.++.++.-..+...| +++|+++|++||+..++-++|+--. . ..... -+|+++.|.-|-|-.|.
T Consensus 150 ~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPv 229 (389)
T PF05889_consen 150 ELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPV 229 (389)
T ss_dssp HHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEES
T ss_pred HhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecC
Confidence 2 35578888888888888988 9999999999999999999984200 0 01112 36888888888887552
Q ss_pred CeeEEEE-Ec-ChHHHHHHHHH
Q 013210 253 DIIAGAV-CG-PANLVNSMMDL 272 (447)
Q Consensus 253 ~~igG~l-~~-~~~~~~~l~~~ 272 (447)
||.+ ++ .+..+..+...
T Consensus 230 ---Ggai~As~~~~~i~~vs~~ 248 (389)
T PF05889_consen 230 ---GGAIMASFDPSGILAVSKE 248 (389)
T ss_dssp ---SHEEEEESSHHHHHHHHHT
T ss_pred ---CCcEEEecCHHHHHHHHHH
Confidence 4444 33 45566666543
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.6e-05 Score=74.19 Aligned_cols=282 Identities=11% Similarity=0.025 Sum_probs=155.7
Q ss_pred chHHHHHHHHHHHhCCCe---EEEeCCh-HHHHHHHHHHhcCCCCe--EEEeCCCchhHHHHHHhhcCcccCeeEE----
Q 013210 99 PTVLNLSRQMAALEGTEA---AYCTASG-MSAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFPRACNITTT---- 168 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~---~~~tsgg-t~A~~~al~~l~~~gd~--Vi~~~~~y~~~~~~~~~~~~~~~g~~~~---- 168 (447)
..+.++++.+.++++.++ |+|..|| |....++...++..+.. |.+-..+-.+.-.. +.+.....-..+.
T Consensus 50 ~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA-~~~~~~~~~~~~~~~~~ 128 (365)
T COG1932 50 NVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIKEA-KKVGKQPKLIDARIEEA 128 (365)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCceeEeeeehhHhHHHHH-HHhcccccccccceecc
Confidence 456789999999998754 7777654 77777888888765432 44433322222111 1121100000111
Q ss_pred -EeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC-HHHHHHHHHhcCCEEEEeCCCCCC--CCCccCCCCeEEEeCC
Q 013210 169 -FVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN-IPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSI 244 (447)
Q Consensus 169 -~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~-l~~I~~la~~~gi~livD~~~~~~--~~~~~~~g~di~~~S~ 244 (447)
+-...+++.+. + .++...|.+++-..-+|+-.+ ...+. .+.++++|.+-.-+ .++.. ..|++.++.
T Consensus 129 ~~~~iP~~~~~~--~-~~~~ayv~~~~NeTi~Gv~v~~~p~~~-----~~~~~v~D~SS~ilsr~iDvs--k~dviyaga 198 (365)
T COG1932 129 GYGSIPDLSKWD--F-SDNDAYVHFCWNETISGVEVPELPDIG-----SDGLLVADASSAILSRPIDVS--KYDVIYAGA 198 (365)
T ss_pred CccCCCChhhcc--c-CCCccEEEEecCCcccceEccCCCCCC-----CCceEEEecccHHhcCCCChh--HcceEEEeh
Confidence 11111444333 3 333445666543334455443 22221 12889999875222 23333 468999999
Q ss_pred CccccCCCCeeEEEEEcChHHHHHHHHH--------hhhh-hhhcCCCccHHHHHHHHccCCc------HHHHHHHHHHH
Q 013210 245 SKFISGGADIIAGAVCGPANLVNSMMDL--------HQGA-LMLLGPTMNPKVAFELSERIPH------LGLRMKEHCHR 309 (447)
Q Consensus 245 sK~~g~~g~~igG~l~~~~~~~~~l~~~--------~~~~-~~~~g~~~~~~~a~~~~~~~~~------l~~~~~~~~~~ 309 (447)
.|.+|+.| + ++++.++++++++... .... .-..-++++..+.+.....+++ +....++-.++
T Consensus 199 QKnlGpaG--l-tvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~k 275 (365)
T COG1932 199 QKNLGPAG--L-TVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAK 275 (365)
T ss_pred hhccCccc--e-EEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 4 8889999888877542 1100 0012244444444433333333 45566677888
Q ss_pred HHHHHHHHHhCCCeee--CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccc
Q 013210 310 ALIFARRMKKLGLKVL--YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~--~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++.|.+.+.+.++-.+ .+. .+ .-..++|.+.+.+-...|+..+...+ .+.+-+.
T Consensus 276 a~~LY~~id~s~fy~~~v~~~-~R----------------S~mnV~f~~~~~~ld~~fv~eae~~g-----l~~lkGh-- 331 (365)
T COG1932 276 AQLLYDWIDKSDFYRNLVAKA-NR----------------SRMNVTFTLVDAELDKGFVAEAEAAG-----LIYLKGH-- 331 (365)
T ss_pred HHHHHHHHHhCCccccccchh-hc----------------cceeEEEEcCcHHHHHHHHHHHHHcC-----Cceeccc--
Confidence 9999999988765111 111 11 11267788877666677888777643 1122111
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
. ..+-+|+|++ ..-.-+.++.|...++.+.+
T Consensus 332 ----r------------------~vgGmRasiy-nA~~~e~veaL~~fm~~f~~ 362 (365)
T COG1932 332 ----R------------------SVGGLRASIY-NAVPLEDVEALTDFMDWFEE 362 (365)
T ss_pred ----c------------------CCCceeeeee-cCCCHHHHHHHHHHHHHHHH
Confidence 1 1244999999 76566667777777766543
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-05 Score=73.31 Aligned_cols=228 Identities=13% Similarity=0.146 Sum_probs=130.0
Q ss_pred eCChHHHHHHHHH--HhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEE---eCCC----CHHHHHHhhcc-CCceE
Q 013210 120 TASGMSAISSVLM--QLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF---VDIS----DHEMVNSAIVQ-GRTKV 189 (447)
Q Consensus 120 tsggt~A~~~al~--~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~---v~~~----d~~~l~~~i~~-~~t~l 189 (447)
|=|||-|+..+.. +..-++..|.++.|+|+.....+. ..|..+.+ .+.. |.+.+.+.+.. +.-..
T Consensus 126 ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~-----~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ 200 (427)
T KOG1411|consen 126 TLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFK-----DAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSI 200 (427)
T ss_pred eccCcchhhHHHHHHHhhccccceeecCCcccccCcccc-----ccCcceeeeeeccccccccchHHHHHHHhcCCCCcE
Confidence 4577777766543 334568899999999998776663 25655543 3332 55554444422 22223
Q ss_pred EEE-EcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-Ccc----------CC-CCeEEEeCCCccccCCCC
Q 013210 190 LYF-ESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-SPA----------RL-GADVVVHSISKFISGGAD 253 (447)
Q Consensus 190 V~i-~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-~~~----------~~-g~di~~~S~sK~~g~~g~ 253 (447)
|++ ...+||||.-.. .++|.++.++.+.+-++|-+|.+|.- +.. +. +.-+++.|+.|-+|..|.
T Consensus 201 ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgE 280 (427)
T KOG1411|consen 201 ILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGE 280 (427)
T ss_pred EEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhh
Confidence 333 456899998763 67888889999999999999955532 111 11 345789999999999999
Q ss_pred eeEEEE---EcChHHHHHHHH----HhhhhhhhcCCCccHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHh
Q 013210 254 IIAGAV---CGPANLVNSMMD----LHQGALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKK 319 (447)
Q Consensus 254 ~igG~l---~~~~~~~~~l~~----~~~~~~~~~g~~~~~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~ 319 (447)
|+ |++ +.+.+...++.. .-.+ ..+..+......+...+... .++....+++...++.|.+.|..
T Consensus 281 Rv-Ga~svvc~~ad~A~rV~SQlk~liRp-mYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~ 358 (427)
T KOG1411|consen 281 RV-GALSVVCKDADEAKRVESQLKILIRP-MYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEK 358 (427)
T ss_pred cc-ceeEEEecCHHHHHHHHHHHHHHhcc-cccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhc
Confidence 99 554 445555544432 2111 11122222222222222211 11223344556666666666655
Q ss_pred CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013210 320 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 370 (447)
Q Consensus 320 ~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~ 370 (447)
.+... ...+..++ =|||+|.--++++.+.+.++..
T Consensus 359 ~gs~~---------~W~hI~~Q-------IGMF~fTgl~peQv~~l~ke~~ 393 (427)
T KOG1411|consen 359 EGSPG---------NWSHITKQ-------IGMFCFTGLNPEQVDWLTKEYH 393 (427)
T ss_pred CCCCc---------cHHHHHHh-------hheeeecCCCHHHHHHHHhhhe
Confidence 43211 11222222 2488888768887777766654
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=80.39 Aligned_cols=223 Identities=16% Similarity=0.163 Sum_probs=134.5
Q ss_pred CchHHHHHHHHHHHhCCCeEEEe-CChHHHHHHHH---HHhc-CCCC---e-EEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCT-ASGMSAISSVL---MQLC-SSGG---H-VVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~t-sggt~A~~~al---~~l~-~~gd---~-Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
.....+|++.+..+.|-+.+.|- +||.++-.+.| ++.. .+|+ . -+++...|+...... .+.|.+++
T Consensus 581 ~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA-----~Magmkvv 655 (1001)
T KOG2040|consen 581 QQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASA-----AMAGMKVV 655 (1001)
T ss_pred HHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhH-----HhcCCEEE
Confidence 34567889999999999887664 56666555444 4433 3342 2 345555666555554 23688888
Q ss_pred EeCCC-----CHHHHHHhhc--cCCceEEEEEcCCCCCccc-cCHHHHHHHHHhcCCEEEEeCCC--CCC-CCCccCCCC
Q 013210 169 FVDIS-----DHEMVNSAIV--QGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDNTF--SPL-VLSPARLGA 237 (447)
Q Consensus 169 ~v~~~-----d~~~l~~~i~--~~~t~lV~i~~~~NptG~v-~~l~~I~~la~~~gi~livD~~~--~~~-~~~~~~~g~ 237 (447)
.|..+ |..+|++..+ .++..++.+..|+. .|.. ..+++++++.|+||--+..|.+- +.. ..+|-++|.
T Consensus 656 pV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~Ga 734 (1001)
T KOG2040|consen 656 PVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGA 734 (1001)
T ss_pred EeeccCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccCCccccc
Confidence 87765 7778877653 24677888888875 3555 46999999999999999999885 222 357888999
Q ss_pred eEEEeCCCccccCC----CCeeEEEEEcChHHHHHHHHH------hhhh--------hhhcCCCccHHHHHH--HHccCC
Q 013210 238 DVVVHSISKFISGG----ADIIAGAVCGPANLVNSMMDL------HQGA--------LMLLGPTMNPKVAFE--LSERIP 297 (447)
Q Consensus 238 di~~~S~sK~~g~~----g~~igG~l~~~~~~~~~l~~~------~~~~--------~~~~g~~~~~~~a~~--~~~~~~ 297 (447)
|+.-.-+||.|..| |.-+ |=+..++.+...+-.. +.+. ...+|+..-....|+ .+-+..
T Consensus 735 DV~HLNLHKTFcIPHGGGGPg~-gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~ 813 (1001)
T KOG2040|consen 735 DVCHLNLHKTFCIPHGGGGPGM-GPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSG 813 (1001)
T ss_pred cceeecccceeeecCCCCCCCC-CccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhccc
Confidence 99999999998633 1112 4444444443332110 0000 001121111112222 233334
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGLKVLYPG 328 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~ 328 (447)
.+....+-..-++.++..+|+.+ +++.+-+
T Consensus 814 GL~~as~~AiLNaNYMakRLe~h-Ykil~~~ 843 (1001)
T KOG2040|consen 814 GLKDASKIAILNANYMAKRLESH-YKILFRG 843 (1001)
T ss_pred ccchhhHHHhhhhHHHHHHHhhc-cceeEec
Confidence 44444444567788999999875 3444433
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.5e-05 Score=69.02 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=114.4
Q ss_pred HHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCC---CeEEEeCCCchhHHHHHHhhcCcccCeeE----EEeCCC-
Q 013210 104 LSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSG---GHVVAARTLYGGTHALLTHFFPRACNITT----TFVDIS- 173 (447)
Q Consensus 104 l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~----~~v~~~- 173 (447)
.-..++.+.|+. .+.+.++-|.-++..+.++.+|. -+|+...-.|++-+-.+...+.. .|+.+ +.+.+.
T Consensus 116 il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~l-hG~~~e~sm~~iePRE 194 (465)
T KOG3846|consen 116 ILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKL-HGISPENSMIQIEPRE 194 (465)
T ss_pred hhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhh-cCCChHHheEEecccc
Confidence 445677778874 37788888888888888887764 36888888888766666444332 45432 122221
Q ss_pred -----CHHHHHHhhcc--CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCC
Q 013210 174 -----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSI 244 (447)
Q Consensus 174 -----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~ 244 (447)
..+++.+.|+. +..++|++..++.-||...++.+|-..-+..|+++-.|-++ +..+....++|+|+.+.+.
T Consensus 195 GEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCS 274 (465)
T KOG3846|consen 195 GEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCS 274 (465)
T ss_pred cccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEee
Confidence 34555555532 45788999999999999999999997777789999999988 5566667788999999999
Q ss_pred CccccCCCCeeEEEEEcC
Q 013210 245 SKFISGGADIIAGAVCGP 262 (447)
Q Consensus 245 sK~~g~~g~~igG~l~~~ 262 (447)
.|++.....-|||..+-.
T Consensus 275 YKYlnaGaGgIgGlFvHe 292 (465)
T KOG3846|consen 275 YKYLNAGAGGIGGLFVHE 292 (465)
T ss_pred ecccccCCCccceeeeeh
Confidence 999975444477776644
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.016 Score=59.22 Aligned_cols=138 Identities=20% Similarity=0.234 Sum_probs=90.9
Q ss_pred HHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHH
Q 013210 103 NLSRQMAALEGTE--AAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVN 179 (447)
Q Consensus 103 ~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~ 179 (447)
..+..|+++.|-+ ++-+---||+|-.+..+.. ..+++++++....|+.+...++.... .+|+++.. .|+++..
T Consensus 167 NyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~-~~~i~v~~---~~~~~~~ 242 (1001)
T KOG2040|consen 167 NYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAK-GFGIKVVV---SDIKEAD 242 (1001)
T ss_pred hhHHhhhhccCCcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhcccc-ccceeEEe---cCHHHhh
Confidence 3445566666642 2333444555555443332 45677899999999999988843332 25666444 3444433
Q ss_pred HhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCcc
Q 013210 180 SAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKF 247 (447)
Q Consensus 180 ~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~ 247 (447)
.. ..+...|++..|.. -|.+.|..++++.+++.|.++++-.-- --+...|.++|+|++++|...+
T Consensus 243 ~s--~~~v~gvlvQYP~t-~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF 309 (1001)
T KOG2040|consen 243 YS--SKDVSGVLVQYPDT-EGSVLDFDELVELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF 309 (1001)
T ss_pred cc--ccceeEEEEEcCCC-CCcccCHHHHHHHhhccCceEEEeehhhHHHccCChhhcCceeeecccccc
Confidence 22 34678889988865 589999999999999999887654222 2234567889999999987764
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0036 Score=56.97 Aligned_cols=161 Identities=15% Similarity=0.257 Sum_probs=94.4
Q ss_pred HHHHHHHHHhCC---CeEEEeC--ChHHHHHHHHHHhcC--C-CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC--
Q 013210 103 NLSRQMAALEGT---EAAYCTA--SGMSAISSVLMQLCS--S-GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-- 172 (447)
Q Consensus 103 ~l~~~ia~l~g~---~~~~~ts--ggt~A~~~al~~l~~--~-gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-- 172 (447)
++...+-.+.|. ..+++++ +|+ ++.+.+.++.. | .+.|+-....-.+....+. ..|+++..++.
T Consensus 61 e~a~~~i~l~glhav~nc~vvpl~tgm-slslc~~s~r~krpkakyiiw~ridqks~~ksi~-----~agfepiiie~i~ 134 (432)
T KOG3843|consen 61 EFAKDAIHLAGLHAVANCFVVPLATGM-SLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSII-----HAGFEPIIIENIL 134 (432)
T ss_pred HHHHHHHHHhhhhhhhceeEEeccccc-cHHHHHHHHhhcCCcccEEEEEecchHHHHHHHH-----hcCCCceeeeccc
Confidence 344444444453 4455544 444 35555655532 2 3567767776666655552 24666555442
Q ss_pred --C----CHHHHHHhhccCCce-EEEEEcCCCC-Ccccc-CHHHHHHHHHhcCCEEEEeCCCCCCCC-------CccCC-
Q 013210 173 --S----DHEMVNSAIVQGRTK-VLYFESISNP-TLAVA-NIPELSRLAHDKGVTVVVDNTFSPLVL-------SPARL- 235 (447)
Q Consensus 173 --~----d~~~l~~~i~~~~t~-lV~i~~~~Np-tG~v~-~l~~I~~la~~~gi~livD~~~~~~~~-------~~~~~- 235 (447)
| |++.+++.++.-... .+.+.+..+- .-... .+++|+.+|..|+++-++.++|+--.- ...+.
T Consensus 135 d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~g 214 (432)
T KOG3843|consen 135 DGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECG 214 (432)
T ss_pred cchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhc
Confidence 2 788888877432222 3333322211 11222 499999999999999999999842110 11122
Q ss_pred CCeEEEeCCCccccCCCCeeEEEEEc--ChHHHHHHHHH
Q 013210 236 GADVVVHSISKFISGGADIIAGAVCG--PANLVNSMMDL 272 (447)
Q Consensus 236 g~di~~~S~sK~~g~~g~~igG~l~~--~~~~~~~l~~~ 272 (447)
.+|.++.|+-|.|..| +||+++. ++.+++.+.+.
T Consensus 215 rida~vqsldknf~vp---vggaiia~fk~n~iq~iak~ 250 (432)
T KOG3843|consen 215 RIDAFVQSLDKNFMVP---VGGAIIAAFKDNFIQEIAKM 250 (432)
T ss_pred cHHHHHHHhhhcceee---cchhHhhHhHHHHHHHHHHh
Confidence 3689999999999976 6788754 55667666554
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0027 Score=54.38 Aligned_cols=49 Identities=14% Similarity=0.320 Sum_probs=41.0
Q ss_pred HHHHHHHHHHh----C------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchh
Q 013210 102 LNLSRQMAALE----G------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150 (447)
Q Consensus 102 ~~l~~~ia~l~----g------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~ 150 (447)
.++|+.+|+++ | .+.+++|+|+++|+.++++.++.+||.|+++.|.|++
T Consensus 95 ~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 95 ANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred HHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 45666666664 4 2459999999999999999999999999999999974
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.72 Score=42.91 Aligned_cols=241 Identities=13% Similarity=0.105 Sum_probs=122.7
Q ss_pred CchHHHHHHHHHHHhCCCe---EEEe-CChHHHHHHHHHHhc--CCC---CeEEEeCCCchhHHHHHHhhcCcccCee-E
Q 013210 98 NPTVLNLSRQMAALEGTEA---AYCT-ASGMSAISSVLMQLC--SSG---GHVVAARTLYGGTHALLTHFFPRACNIT-T 167 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~---~~~t-sggt~A~~~al~~l~--~~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~~-~ 167 (447)
...++..+..+.++++.++ ++|. .|||.-..++...++ +.| |-|++-...-.+.-+.- + +|.. .
T Consensus 51 ~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAk-----k-~~~~~~ 124 (370)
T KOG2790|consen 51 AKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAK-----K-YGTPNI 124 (370)
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhhccccCCccceEEeccccHHHHHHHH-----h-hCCceE
Confidence 3456788888888888643 6665 455655555544554 444 56776665433333322 2 2321 1
Q ss_pred EE--------eCCCCHHHHHHhhccCCceEEEEEcCCCCC--ccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccCC-C
Q 013210 168 TF--------VDISDHEMVNSAIVQGRTKVLYFESISNPT--LAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-G 236 (447)
Q Consensus 168 ~~--------v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt--G~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~~-g 236 (447)
+. -...|.+.++. +++.+.|+.|. |+| |.-.+ .+- +-.-+|.++++|-.- .|.-+|.+. .
T Consensus 125 V~~~~k~y~ygkvPd~~~w~~---~~da~yvyyCa--NETVHGVEf~--~~P-~~~~~~~vlVaDmSS-nflSrpvDvsk 195 (370)
T KOG2790|consen 125 VIPKLKSYTYGKVPDPSTWEL---NPDASYVYYCA--NETVHGVEFD--FIP-VNDPKGAVLVADMSS-NFLSRPVDVSK 195 (370)
T ss_pred EeccccccccCcCCChhhccc---CCCccEEEEec--CceeeceecC--CCC-CCCCCCceEEEeccc-chhcCCccchh
Confidence 11 12336666664 55667777653 444 33321 111 223468899999653 333333332 2
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh-----------hhhhhcCCCccHHHHHHHHccC---CcHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----------GALMLLGPTMNPKVAFELSERI---PHLGLR 302 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-----------~~~~~~g~~~~~~~a~~~~~~~---~~l~~~ 302 (447)
.+++.....|..|+.|.. .++.+++++........ .....+.++......-+.+..+ ..+...
T Consensus 196 ~gvi~aGAQKN~G~aG~T---vvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~ 272 (370)
T KOG2790|consen 196 FGVIFAGAQKNVGPAGVT---VVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAM 272 (370)
T ss_pred cceEEeccccccCccccE---EEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHH
Confidence 457777899999998854 35667776654322110 0111112222222222222211 123333
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013210 303 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ 370 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~ 370 (447)
.+.-.+..+.+.+.+.+...-...|-.+... .. ..+.|.+...+--.+|++...
T Consensus 273 e~~n~~KskllYd~iD~s~gfy~cpVe~~~R------S~--------MNV~Fri~~d~Le~eFLkeA~ 326 (370)
T KOG2790|consen 273 EKLNQEKSKLLYDAIDNSNGFYRCPVEPSVR------SR--------MNVPFRIEKDELEAEFLKEAA 326 (370)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEcccchhhh------hh--------cccceeecchHHHHHHHHHHH
Confidence 3444677788899998874434444322211 11 156677775554456665544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 447 | ||||
| 3mkj_A | 398 | Methionine Gamma-Lyase From Citrobacter Freundii Wi | 4e-56 | ||
| 3jwa_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 3e-55 | ||
| 3jw9_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 4e-55 | ||
| 2rfv_A | 398 | High Resolution Structure Of L-Methionine Gamma-Lya | 7e-55 | ||
| 1y4i_A | 398 | Crystal Structure Of Citrobacter Freundii L-Methion | 1e-54 | ||
| 1pg8_A | 398 | Crystal Structure Of L-Methionine Alpha-, Gamma-Lya | 1e-48 | ||
| 1e5e_A | 404 | Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin | 3e-48 | ||
| 3vk2_A | 398 | Crystal Structure Of L-Methionine Gamma-Lyase From | 5e-48 | ||
| 1gc0_A | 398 | Crystal Structure Of The Pyridoxal-5'-Phosphate Dep | 5e-48 | ||
| 3e6g_A | 400 | Crystal Structure Of Xometc, A Cystathionine C-Lyas | 3e-44 | ||
| 3aej_A | 389 | Reaction Intermediate Structure Of Entamoeba Histol | 6e-43 | ||
| 3acz_A | 389 | Crystal Structure Of Entamoeba Histolytica Methioni | 3e-42 | ||
| 1pff_A | 331 | Crystal Structure Of Homocysteine Alpha-, Gamma-Lya | 4e-42 | ||
| 1qgn_A | 445 | Cystathionine Gamma-Synthase From Nicotiana Tabacum | 2e-41 | ||
| 3ndn_A | 414 | Crystal Structure Of O-Succinylhomoserine Sulfhydry | 1e-33 | ||
| 1cs1_A | 386 | Cystathionine Gamma-Synthase (Cgs) From Escherichia | 2e-33 | ||
| 1ibj_A | 464 | Crystal Structure Of Cystathionine Beta-Lyase From | 2e-31 | ||
| 2ctz_A | 421 | Crystal Structure Of O-Acetyl Homoserine Sulfhydryl | 6e-31 | ||
| 1n8p_A | 393 | Crystal Structure Of Cystathionine Gamma-lyase From | 9e-31 | ||
| 3elp_B | 410 | Structure Of Cystationine Gamma Lyase Length = 410 | 1e-30 | ||
| 2nmp_A | 403 | Crystal Structure Of Human Cystathionine Gamma Lyas | 1e-30 | ||
| 3qhx_A | 392 | Crystal Structure Of Cystathionine Gamma-Synthase M | 6e-30 | ||
| 2cb1_A | 412 | Crystal Structure Of O-Actetyl Homoserine Sulfhydry | 1e-29 | ||
| 3ri6_A | 430 | A Novel Mechanism Of Sulfur Transfer Catalyzed By O | 5e-29 | ||
| 1cl2_A | 395 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 8e-18 | ||
| 2fq6_A | 415 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 1e-17 | ||
| 1cl1_A | 395 | Cystathionine Beta-Lyase (Cbl) From Escherichia Col | 5e-17 |
| >pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398 | Back alignment and structure |
|
| >pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398 | Back alignment and structure |
|
| >pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398 | Back alignment and structure |
|
| >pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398 | Back alignment and structure |
|
| >pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398 | Back alignment and structure |
|
| >pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398 | Back alignment and structure |
|
| >pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404 | Back alignment and structure |
|
| >pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398 | Back alignment and structure |
|
| >pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398 | Back alignment and structure |
|
| >pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400 | Back alignment and structure |
|
| >pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389 | Back alignment and structure |
|
| >pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389 | Back alignment and structure |
|
| >pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331 | Back alignment and structure |
|
| >pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445 | Back alignment and structure |
|
| >pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414 | Back alignment and structure |
|
| >pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386 | Back alignment and structure |
|
| >pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464 | Back alignment and structure |
|
| >pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421 | Back alignment and structure |
|
| >pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393 | Back alignment and structure |
|
| >pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410 | Back alignment and structure |
|
| >pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403 | Back alignment and structure |
|
| >pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392 | Back alignment and structure |
|
| >pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412 | Back alignment and structure |
|
| >pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430 | Back alignment and structure |
|
| >pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395 | Back alignment and structure |
|
| >pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415 | Back alignment and structure |
|
| >pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = e-109
Identities = 108/371 (29%), Positives = 180/371 (48%), Gaps = 20/371 (5%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
+ + ++ + + + R F Y R+ NPT + L +++ALEG
Sbjct: 73 VTDAITTPVVNTSAYFFNKTSELIDFKEKR----RASFEYGRYGNPTTVVLEEKISALEG 128
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
E+ ASGM A + +L+ L +GGH+V Y T + P+ IT T +D +
Sbjct: 129 AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM-GITATVIDPA 187
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D + A+ Q + + + ES +NP L +I +S+L H+KG V +D TF +PL
Sbjct: 188 DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKA 247
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+V+HS +KF+ G D++AG + GP LV+ + +LH LG +NP A+ +
Sbjct: 248 LALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI----LGGALNPNAAYLI 303
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 350
+ L LR+++ AL A ++ V YPGL+ HP H + K GFGG
Sbjct: 304 IRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---GFGG 360
Query: 351 LLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 409
+ +++ + ++ L+ +A S G E+++ + +L+ ++A G
Sbjct: 361 AVSFEVDGDLLTTAKFVDALKIPY----IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYG 416
Query: 410 ISAGLVRMSVG 420
I LVR S G
Sbjct: 417 IMDNLVRFSFG 427
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414 | Back alignment and structure |
|---|
Score = 327 bits (841), Expect = e-109
Identities = 104/376 (27%), Positives = 185/376 (49%), Gaps = 26/376 (6%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
++ ++ + + FAGE D ++YSR+ NPTV ++ +EG
Sbjct: 40 GFEETAEAMYLTSGYVYGSAAVAEKSFAGE----LDHYVYSRYGNPTVSVFEERLRLIEG 95
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
AA+ TASGM+A+ + L L +G +VAAR+L+G + + PR + T FVD
Sbjct: 96 APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRW-GVQTVFVDGD 154
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D A+ T+ ++FE+ SNP ++ +I ++ LAH G VV+DN F +PL+
Sbjct: 155 DLSQWERAL-SVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQG 213
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LG DVVV+S +K I G ++ GA+ G ++ + GP M+ A+ L
Sbjct: 214 FPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRH---TGPAMSAFNAWVL 270
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKS-MANKEYGFG 349
+ + L +R++ A A + V YP L HP ++L K M+ G G
Sbjct: 271 LKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMS----GGG 326
Query: 350 GLLCLDME-----TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404
++ ++ +++A +++ ++ ++ +LG ++L++ ++T + E
Sbjct: 327 TVVTFALDCPEDVAKQRAFEVLDKMRLID----ISNNLGDAKSLVTHPATTTHRAMGPEG 382
Query: 405 KALAGISAGLVRMSVG 420
+A G+ G+VR+SVG
Sbjct: 383 RAAIGLGDGVVRISVG 398
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389 | Back alignment and structure |
|---|
Score = 325 bits (836), Expect = e-109
Identities = 121/370 (32%), Positives = 185/370 (50%), Gaps = 19/370 (5%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
I ++TF + +F G+ + IYSR NPTV + ++EG
Sbjct: 18 VLHSHAYPIFQTSTFCFDSTQQGADLFMGK----GEGHIYSRLGNPTVEQFEEMVCSIEG 73
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
+ SGM AISS + G H++A TLYG T +L TH+ PR I +D S
Sbjct: 74 AAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF-GIEVDLIDTS 132
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D E V +A + TK++Y ES +NPT V++I ++ + H++G +VVD TF SP L P
Sbjct: 133 DVEKVKAAW-KPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKP 191
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+ +HS+SK+I+G D+I G + + ++ G M P AF
Sbjct: 192 LELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKD---AGSLMAPMDAFLC 248
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 350
+ + L +RM+ H L A+ +++ KV +PGLE P H++ K G+G
Sbjct: 249 ARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT---GYGS 305
Query: 351 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 410
+M++ E A +LM +L+ +AVSLG +TL+ S T + + GI
Sbjct: 306 TFLFEMKSFEAAKKLMEHLKVCT----LAVSLGCVDTLIEHPASMTHAAVPENIMRKQGI 361
Query: 411 SAGLVRMSVG 420
+ LVR+SVG
Sbjct: 362 TPELVRISVG 371
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398 | Back alignment and structure |
|---|
Score = 325 bits (835), Expect = e-108
Identities = 136/373 (36%), Positives = 207/373 (55%), Gaps = 23/373 (6%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
G ++ I ++TF E FA E +IY+R NPT L +++A LE
Sbjct: 23 STGALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLER 78
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
EA TASG+SAI++ L+ LC G H+V+A +YG THA L+H P+ I FVD +
Sbjct: 79 GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF-GINVRFVDAA 137
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P
Sbjct: 138 KPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQP 196
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM-MDLHQGALMLLGPTMNPKVAFE 291
+LGAD+VVHS++K+I+G D+I G + G ++ + G M+P A+
Sbjct: 197 LQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI---TGGCMSPFNAWL 253
Query: 292 LSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKS-MANKEYGF 348
+ LG+RM+ HC AL AR ++ +V YPGL HP +EL + M+
Sbjct: 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS----LP 309
Query: 349 GGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 407
GG++ ++ E R++N ++ +AVSLG ETL+ S T S + EE+
Sbjct: 310 GGIISFEIAGGLEAGRRMINSVELCL----LAVSLGDTETLIQHPASMTHSPVAPEERLK 365
Query: 408 AGISAGLVRMSVG 420
AGI+ GL+R+SVG
Sbjct: 366 AGITDGLIRLSVG 378
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398 | Back alignment and structure |
|---|
Score = 321 bits (824), Expect = e-107
Identities = 136/372 (36%), Positives = 192/372 (51%), Gaps = 21/372 (5%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
G + + +ATFT E FAGE + YSR NPT+ L +MA+LEG
Sbjct: 24 HGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLEG 79
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
EA ASGM AI+S L L G V+ TLYG T A L H + VD++
Sbjct: 80 GEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF-GVKLRHVDMA 138
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D + + +A+ T+V+YFES +NP + +A+I ++++A G TVVVDNT+ +P + P
Sbjct: 139 DLQALEAAM-TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRP 197
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM-MDLHQGALMLLGPTMNPKVAFE 291
LGAD+VVHS +K++SG DI AG V G LV+ + + + G ++P A
Sbjct: 198 LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDM---TGAVLSPHDAAL 254
Query: 292 LSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG 349
L I L LRM HC A + A + + + YPGL P + L + + G
Sbjct: 255 LMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS---QPG 311
Query: 350 GLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 408
G++ +++ R MN LQ ++ AVSLG E+L S T S EE+A
Sbjct: 312 GMIAFELKGGIGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEERAHY 367
Query: 409 GISAGLVRMSVG 420
GIS GLVR+SVG
Sbjct: 368 GISEGLVRLSVG 379
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404 | Back alignment and structure |
|---|
Score = 317 bits (816), Expect = e-105
Identities = 124/373 (33%), Positives = 203/373 (54%), Gaps = 22/373 (5%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
+ G I ++TF + FAG+ +IY+R NPTV NL ++A LE
Sbjct: 21 QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQ----ESGYIYTRLGNPTVSNLEGKIAFLEK 76
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
TEA T+SGM AI++ ++ + +G H+++ LYG THAL H + I F++ +
Sbjct: 77 TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF-GIQVDFINTA 135
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTF-SPLVLS 231
V + + TK++YFE+ +NPTL + ++ + + AH + GV V+ DNTF SP++ +
Sbjct: 136 IPGEVKKHM-KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITN 194
Query: 232 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM-MDLHQGALMLLGPTMNPKVAF 290
P G DVVVHS +K+I+G D++AG +CG A+L+ + M + G ++P A+
Sbjct: 195 PVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI---TGSVISPHDAW 251
Query: 291 ELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGF 348
++ + L +RMK A+ A +K KV YPG EDH H++ K +
Sbjct: 252 LITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR---MY 308
Query: 349 GGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 407
G ++ ++ E A +L++ L+ +AVSLG E+L+ S T + + EE+
Sbjct: 309 GSMITFILKSGFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREA 364
Query: 408 AGISAGLVRMSVG 420
AGI+ G++R+SVG
Sbjct: 365 AGITDGMIRLSVG 377
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400 | Back alignment and structure |
|---|
Score = 289 bits (742), Expect = 2e-94
Identities = 127/372 (34%), Positives = 192/372 (51%), Gaps = 29/372 (7%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
G V I A++T+ + GE F YSR NPT R +AALEG
Sbjct: 34 STGAVMPPIYATSTY--------AQSSPGEHQG----FEYSRTHNPTRFAYERCVAALEG 81
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
A+ ASGM+A S+V+ +L +G HVVA LYGGT L R + +FVD++
Sbjct: 82 GTRAFAFASGMAATSTVM-ELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT 140
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D +AI + TK+++ E+ +NP L + +I ++ +A G+ VVDNTF SP++ P
Sbjct: 141 DPAAFKAAI-RADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRP 199
Query: 233 ARLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 291
LGAD+VVHS +K+++G +D++ G AV G + M Q + +G P +F
Sbjct: 200 LSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS---IGGVQGPFDSFL 256
Query: 292 LSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG 349
+ L LRM+ HC AL A+ ++ KV+YPGL HP H L K + GFG
Sbjct: 257 ALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMS---GFG 313
Query: 350 GLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 408
G++ + ++ + A R + + +A SLG E+L++ T + + +
Sbjct: 314 GIVSIVLKGGFDAAKRFCEKTELFT----LAESLGGVESLVNHPAVMTHASIPVARREQL 369
Query: 409 GISAGLVRMSVG 420
GIS LVR+SVG
Sbjct: 370 GISDALVRLSVG 381
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 2e-94
Identities = 111/371 (29%), Positives = 175/371 (47%), Gaps = 28/371 (7%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
++G V I S+T+ E YSR NPT + R +A LEG
Sbjct: 19 QYGCVVPPIHLSSTYNFTGF--------NEPRA----HDYSRRGNPTRDVVQRALAELEG 66
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
A T +GMSAI V G +VA YGG++ L R FVD
Sbjct: 67 GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQG 125
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D + + +A+ + K++ ES SNP L V +I ++ LA + G VVDNTF SP + +P
Sbjct: 126 DEQALRAAL-AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNP 184
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+V+HS +K+++G +D++AG V V + + +G T ++ L
Sbjct: 185 LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN---IGVTGGAFDSYLL 241
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 350
+ L RM+ A + ++ L K+ +P L ++ HE+ GFG
Sbjct: 242 LRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGA 298
Query: 351 LLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 409
+L +++ E+ R + L + +A SLG E+L+S + + T + + E +A AG
Sbjct: 299 MLSFELDGDEQTLRRFLGGLSLFT----LAESLGGVESLISHAATMTHAGMAPEARAAAG 354
Query: 410 ISAGLVRMSVG 420
IS L+R+S G
Sbjct: 355 ISETLLRISTG 365
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464 | Back alignment and structure |
|---|
Score = 291 bits (747), Expect = 2e-94
Identities = 106/379 (27%), Positives = 182/379 (48%), Gaps = 28/379 (7%)
Query: 45 LASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNL 104
L + ++F ++ + +ATF + Y+R NPT L
Sbjct: 91 LVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGP------------YDYTRSGNPTRDAL 138
Query: 105 SRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN 164
+A L+ + A+C SGM+A+S+V L +G +VA +YGG+ LL+ PR+
Sbjct: 139 ESLLAKLDKADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRS-G 196
Query: 165 ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 224
+ V+ + + V +AI +TK+++ ES +NP +++I ++S +AH +G V+VDN+
Sbjct: 197 VVVKRVNTTKLDEVAAAI-GPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNS 255
Query: 225 F-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT 283
SP++ P LGAD+V+HS +KFI+G +D++AG + + + Q + G
Sbjct: 256 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNS---EGSG 312
Query: 284 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSM 341
+ P + I + LR+++ A A + KV Y GL DHP H L S
Sbjct: 313 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQ 372
Query: 342 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 401
A G G + + + L+ + F AVS G ++L+S + + +
Sbjct: 373 AK---GAGSVFSFITGSVALSKHLVETTK---YFSI-AVSFGSVKSLISMPCFMSHASIP 425
Query: 402 AEEKALAGISAGLVRMSVG 420
AE + G++ LVR+S G
Sbjct: 426 AEVREARGLTEDLVRISAG 444
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392 | Back alignment and structure |
|---|
Score = 288 bits (740), Expect = 3e-94
Identities = 114/371 (30%), Positives = 172/371 (46%), Gaps = 30/371 (8%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
G VN I AS+TF G +G R + Y+R NPT L +AA+E
Sbjct: 32 ATGAVNAPIYASSTFA----------QDG-VGGLRGGYEYARTGNPTRTALEAALAAVED 80
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
+SGM+A L + G HVV YGGT L+ F N+ T V ++
Sbjct: 81 AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW-NVEYTPVALA 139
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
D + V +AI + T++++ E+ +NP L++A+I +++L D V+VDNTF SP + P
Sbjct: 140 DLDAVRAAI-RPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQP 198
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGADVV+HS +K+I G +D++ GA+ ++ Q G P A+
Sbjct: 199 LSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNG---AGAVPGPFDAYLT 255
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 350
+ L LRM+ H A A + + VLYPGL HP H + GFGG
Sbjct: 256 MRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR---GFGG 312
Query: 351 LLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 409
++ + M A +L + +A SLG E+L+ + T + +
Sbjct: 313 MVSVRMRAGRTAAEQLCAKTNIFI----LAESLGSVESLIEHPSAMTHASTAGSQ---LE 365
Query: 410 ISAGLVRMSVG 420
+ LVR+SVG
Sbjct: 366 VPDDLVRLSVG 376
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331 | Back alignment and structure |
|---|
Score = 284 bits (729), Expect = 2e-93
Identities = 106/322 (32%), Positives = 176/322 (54%), Gaps = 17/322 (5%)
Query: 104 LSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC 163
L ++A LE EA TASGM AI++ + +G H+++ LYG THAL H +
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF- 61
Query: 164 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH-DKGVTVVVD 222
+ F+D++ + + + T+++YFE+ +NPTL V +I + + A K + V+VD
Sbjct: 62 GVEVDFIDMAVPGNIEKHL-KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD 120
Query: 223 NTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM-MDLHQGALMLL 280
NTF SP++ +P LG D+VVHS +K+I+G D++AG VC A+++ + +
Sbjct: 121 NTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI---T 177
Query: 281 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELL 338
G ++P A+ ++ L +R+K A A + + KV YPGL DHP HE+
Sbjct: 178 GAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIA 237
Query: 339 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 398
K FG ++ D++ EKA ++++ + +AVSLG E+L+ S T +
Sbjct: 238 KKQMK---MFGSMIAFDVDGLEKAKKVLDNCHVVS----LAVSLGGPESLIQHPASMTHA 290
Query: 399 ELNAEEKALAGISAGLVRMSVG 420
+ EE+ AG++ L+R+SVG
Sbjct: 291 GVPKEEREAAGLTDNLIRLSVG 312
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 4e-92
Identities = 79/378 (20%), Positives = 158/378 (41%), Gaps = 22/378 (5%)
Query: 49 RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQM 108
R + G VN I+ +++ E + + Y R T +L + M
Sbjct: 35 RSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGE---LFYGRRGTLTHFSLQQAM 91
Query: 109 AALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 168
LEG G +A+++ ++ G HV+ T Y + + + +TT+
Sbjct: 92 CELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL-GVTTS 150
Query: 169 FVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH--DKGVTVVVDNTF- 225
+ D + + Q TK+++ ES + T+ V ++P + +++DNT+
Sbjct: 151 WFDPLIGADIVKHL-QPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWA 209
Query: 226 SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN 285
+ ++ G DV + + +K++ G +D + G A + + L+G ++
Sbjct: 210 AGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA----YLMGQMVD 265
Query: 286 PKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMA 342
A+ ++ R + LG+R+++H +L A + + +V +P L HE K
Sbjct: 266 ADTAY-ITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDF 324
Query: 343 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA 402
G GL ++ + L NYL N++ F MA S G YE+L+ + + +
Sbjct: 325 T---GSSGLFSFVLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIAAIRP 380
Query: 403 EEKALAGISAGLVRMSVG 420
+ + S L+R+ +G
Sbjct: 381 QGE--IDFSGTLIRLHIG 396
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 1e-91
Identities = 104/371 (28%), Positives = 179/371 (48%), Gaps = 30/371 (8%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
V I S TF P F YSR NPT L + +AAL+G
Sbjct: 35 SRAVVPPISLSTTFKQGAPGQHSG------------FEYSRSGNPTRNCLEKAVAALDGA 82
Query: 115 EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174
+ ASG++A ++ L +G ++ +YGGT+ + +FVD S
Sbjct: 83 KYCLAFASGLAATVTIT-HLLKAGDQIICMDDVYGGTNRYFRQVASEF-GLKISFVDCSK 140
Query: 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLVLSP 232
+++ +AI TK+++ E+ +NPT V +I + + H G + +VVDNTF SP P
Sbjct: 141 IKLLEAAI-TPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRP 199
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
LGAD+ ++S +K+++G +D++ G V +++ + Q + LG +P +
Sbjct: 200 LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS---LGAVPSPIDCYLC 256
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG 350
+ + L +RM++H + A+ ++ KV+YPGL HP HEL+K G G
Sbjct: 257 NRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---GCTG 313
Query: 351 LLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 409
++ ++ T + A + L+ + +A SLG +E+L T + + ++ + G
Sbjct: 314 MVTFYIKGTLQHAEIFLKNLKLFT----LAESLGGFESLAELPAIMTHASVLKNDRDVLG 369
Query: 410 ISAGLVRMSVG 420
IS L+R+SVG
Sbjct: 370 ISDTLIRLSVG 380
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393 | Back alignment and structure |
|---|
Score = 272 bits (699), Expect = 4e-88
Identities = 105/377 (27%), Positives = 179/377 (47%), Gaps = 34/377 (9%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
HG V I S TF + + YSR NP NL R +AALE
Sbjct: 21 VHGSVIEPISLSTTFK----------QSS-PANPIGTYEYSRSQNPNRENLERAVAALEN 69
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
+ +SG + +++L Q G H V+ +YGGTH T + T+F +
Sbjct: 70 AQYGLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAH-GVETSFTN-D 126
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG----VTVVVDNTF-SPL 228
+ I + TK+++ E+ +NPTL V +I +++ L V +VVDNTF SP
Sbjct: 127 LLNDLPQLI-KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPY 185
Query: 229 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 288
+ +P GAD+VVHS +K+I+G +D++ G + + + Q A +G +P
Sbjct: 186 ISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA---IGAIPSPFD 242
Query: 289 AFELSER-IPHLGLRMKEHCHRALIFARRMK---KLGLKVLYPGLEDHPHHELLKSMANK 344
A+ L+ R + L LR+++ A A + + + V YPGL+ HP+++++ +
Sbjct: 243 AW-LTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQH-R 300
Query: 345 EYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403
+ GG++ ++ E A++ + + + +A SLG E+L+ T + E
Sbjct: 301 DALGGGMISFRIKGGAEAASKFASSTRLFT----LAESLGGIESLLEVPAVMTHGGIPKE 356
Query: 404 EKALAGISAGLVRMSVG 420
+ +G+ LVR+SVG
Sbjct: 357 AREASGVFDDLVRISVG 373
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 4e-80
Identities = 102/355 (28%), Positives = 164/355 (46%), Gaps = 39/355 (10%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
+YSR NPTV +L +++ L G SGM+AIS+ ++ L +G VV L+G
Sbjct: 74 HVYSRSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGH 133
Query: 151 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210
T +L P I FVD+ D V A TK+L+ E+ISNP L VA++ LS+
Sbjct: 134 TLSLFQKTLPSF-GIEVRFVDVMDSLAVEHAC-DETTKLLFLETISNPQLQVADLEALSK 191
Query: 211 LAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV---------- 259
+ H KG+ +VVD T P +L RLG D+ V S +KFISGG + G +
Sbjct: 192 VVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKS 251
Query: 260 ----------CGPANLVNSMMDLHQGALML--LGPTMNPKVAFELSERIPHLGLRMKEHC 307
GP + + LGP+++P A+ S + + LR++ C
Sbjct: 252 LPSLAPYYAKAGPMAFL-----YKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSC 306
Query: 308 HRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL 365
A A + + V +P L D P + + K G +L ++E++E + R
Sbjct: 307 QNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFR---YAGSILTFELESKEASYRF 363
Query: 366 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 420
M+ L+ + ++ ++L+ + + EE+ IS ++R+SVG
Sbjct: 364 MDALKLIRRA----TNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG 414
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 7e-77
Identities = 103/363 (28%), Positives = 164/363 (45%), Gaps = 49/363 (13%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
++Y+R +PT L ++ ALEG A ASG +A + L+ L G VVAA+ L+G
Sbjct: 48 YVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQ 107
Query: 151 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR 210
T L +T +VD + E V A+ +T+ ++ E+++NP L V ++ L+
Sbjct: 108 TIGLFGQVLSLM-GVTVRYVD-PEPEAVREAL-SAKTRAVFVETVANPALLVPDLEALAT 164
Query: 211 LAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAV--------- 259
LA + GV +VVDNTF + + P GA VVV S++K+ SG ++ GAV
Sbjct: 165 LAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWR 224
Query: 260 ------------------CGPANLVNSMMDLHQGALML--LGPTMNPKVAFELSERIPHL 299
L L G ++P A+ L + + +
Sbjct: 225 NYPQFLQPDLKGQIPWEALRARCFP-----ERVRTLGLSLCGMALSPFNAYLLFQGLETV 279
Query: 300 GLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357
LR+ A A R++ + YPGL + P H + G +L LD+
Sbjct: 280 ALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLAS---GGPILTLDLG 336
Query: 358 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 417
E+A+R + ++ A +LG TL+ ++T S L E + AG++ GLVR+
Sbjct: 337 DLERASRFLGAIRL-----LKAANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRV 391
Query: 418 SVG 420
SVG
Sbjct: 392 SVG 394
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421 | Back alignment and structure |
|---|
Score = 239 bits (612), Expect = 1e-74
Identities = 108/369 (29%), Positives = 165/369 (44%), Gaps = 52/369 (14%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
IYSR NPTV L +++AALEG +AA TASG +A L L +G ++V+ LYGG
Sbjct: 50 NIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGG 109
Query: 151 THALLTHFFPRACNITTTFVDISDH-EMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 209
T R I F + E + +T+ + ESI NP L + ++ L+
Sbjct: 110 TFNQFKVTLKRL-GIEVRFTSREERPEEFLALT-DEKTRAWWVESIGNPALNIPDLEALA 167
Query: 210 RLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAV-------- 259
+ A +KGV ++VDNTF +L P GA +V HS++K++ G +IAGA+
Sbjct: 168 QAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPW 227
Query: 260 -----------------------CGPANLVNSMMDLHQGALML--LGPTMNPKVAFELSE 294
G + + L G + P A+ +
Sbjct: 228 EGGRYPLLTEPQPGYHGLRLTEAFGELAFI-----VKARVDGLRDQGQALGPFEAWVVLL 282
Query: 295 RIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352
+ L LR + H L A + + V YPGL HPHH+ + G +L
Sbjct: 283 GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKG--KPGAVL 340
Query: 353 CLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 411
++ E A R ++ L+ + ++G TL S+T S+L+ EE+A AG+S
Sbjct: 341 TFGLKGGYEAAKRFISRLKLISHL----ANVGDTRTLAIHPASTTHSQLSPEEQAQAGVS 396
Query: 412 AGLVRMSVG 420
+VR+SVG
Sbjct: 397 PEMVRLSVG 405
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 1e-49
Identities = 49/287 (17%), Positives = 91/287 (31%), Gaps = 36/287 (12%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG 150
+ Y T+ + + E SG AIS+ L + G ++ + G
Sbjct: 60 YGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLY---ITGK 116
Query: 151 THALLTHFFPRACN--------------ITTTFVDISDHEMVNSAIVQGRTKVLYFES-- 194
+ L + T + D E V +AI TK++ +
Sbjct: 117 PYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAI-HSNTKMIGIQRSK 175
Query: 195 --ISNPTLAVANIPELSRLAHDK--GVTVVVDNTFS--PLVLSPARLGADVVVHSISKFI 248
+ P+ ++ I E+ + V V VDN + P +GAD++ S+ K
Sbjct: 176 GYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNP 235
Query: 249 SGGADIIAGAVCGPANLVNSMMD--LHQGALMLLGPTMNP-KVAFELSERIPHLGLRMKE 305
GG G + G V + G G ++ + ++ PH +
Sbjct: 236 GGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPH---VAGQ 292
Query: 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352
A+ A ++KLG P + + ++
Sbjct: 293 ALKGAIFTAAFLEKLG-MNTSPAWNAPRTDLIQSVQFD---DKDRMI 335
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 1e-48
Identities = 43/277 (15%), Positives = 87/277 (31%), Gaps = 41/277 (14%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAA------ 144
+ Y+ ++ + + E +G AI + L +++
Sbjct: 69 YGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYD 128
Query: 145 --RTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQG-RTKVLYFESISN 197
+ G + + VD+ D V + + K+++ + +
Sbjct: 129 TLHDIIGMDDSKKVGSLREY-GVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTG 187
Query: 198 ----PTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVL--SPARLGADVVVHSISKFIS 249
+L +A I E+ + + + V V VDN + V P +GAD++ S+ K I
Sbjct: 188 YGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIG 247
Query: 250 GGADIIAGAVCGPANLVN--SMMDLHQGALMLLGPTMNP----KVAFELSERIPHLGLRM 303
GG G + G V + G G T ++ + ++
Sbjct: 248 GGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKG 307
Query: 304 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 340
C R M+ G V P + ++
Sbjct: 308 AVFCARI------MELAGFDV-------LPKYNDKRT 331
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 7e-47
Identities = 41/265 (15%), Positives = 83/265 (31%), Gaps = 39/265 (14%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAA------ 144
+ Y ++ + ++ E +G A+ + L G +++
Sbjct: 68 YGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYD 127
Query: 145 --RTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN 197
+ G T I VD+ + E + + + + +
Sbjct: 128 TLHDVIGITENSNMGSLKE-FGINYKQVDLKEDGKPNLEEIEKVL-KEDESITLVHIQRS 185
Query: 198 ------PTLAVANIPELSRLAHD--KGVTVVVDNTF-SPLVLS-PARLGADVVVHSISKF 247
L + +I + + K + VDN + + P +GAD++ S+ K
Sbjct: 186 TGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKN 245
Query: 248 ISGGADIIAGAVCGPANLVNSMMD--LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 305
I GG G + G + + G G T R + GL +
Sbjct: 246 IGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTF-------GVVRSMYQGLFLAP 298
Query: 306 HCHR-----ALIFARRMKKLGLKVL 325
H A++ +R M+ G +V+
Sbjct: 299 HISMEALKGAILCSRIMELAGFEVM 323
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 3e-46
Identities = 52/355 (14%), Positives = 115/355 (32%), Gaps = 56/355 (15%)
Query: 87 DRDFFIYSRHFNPTVLN-----LSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHV 141
++D + + + + + + + SAI + ++ L +
Sbjct: 44 EKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-KPKKVI 102
Query: 142 VAARTLYGGTHALLTHFFPRACN-ITTTFVDISDHEMVNSAIVQGRTKVLYFESISN-PT 199
L G R+C + + + + + I T V+ S +
Sbjct: 103 HYLPELPGHP------SIERSCKIVNAKYFESDKVGEILNKI-DKDTLVIITGSTMDLKV 155
Query: 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPA-----RLGADVVVHSISKFISGGAD 253
+ + N ++ A +K V VD+ + + L +LGAD+VV S K + G
Sbjct: 156 IELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR- 214
Query: 254 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL-RMKEHCHRALI 312
G + G LV+ + + G P + + + + L R+++ RA
Sbjct: 215 --GGLLAGKKELVDKIY-IEG---TKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKN 268
Query: 313 FARRM-------KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANR 364
F K + E P ++K + ++++ E
Sbjct: 269 FDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVY-------KDDTINIKKLIEIGFN 321
Query: 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 419
L+ +G + + T+ G+S S ++ + I + ++
Sbjct: 322 LLK------NYGIITI------TVAGMPGASKSLRIDLTSRDAERIDDNYIIKAI 364
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-41
Identities = 49/278 (17%), Positives = 91/278 (32%), Gaps = 40/278 (14%)
Query: 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAA------ 144
+ Y T+ + + E SG AIS+VL + ++
Sbjct: 54 YGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYD 113
Query: 145 --RTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFE---- 193
+ G + +I + V + D + + +TK++ +
Sbjct: 114 TLEEIVGIRKQGQGSL--KDFHIGYSSVPLLENGDVDFPRIAKKM-TPKTKMIGIQRSRG 170
Query: 194 SISNPTLAVANIPELSRLAHDKG--VTVVVDNTF-SPLVLS-PARLGADVVVHSISKFIS 249
P+ + I E+ + V V VDN + + P +GAD++ S+ K
Sbjct: 171 YADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPG 230
Query: 250 GGADIIAGAVCGPANLVNSMMD-LHQ-GALMLLGPTMNPKVAFELSERIPHLGLRMKEHC 307
GG G + G LV+ L G G ++ + G + H
Sbjct: 231 GGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSL-------LEMYQGFFLAPHV 283
Query: 308 HR-----ALIFARRMKKLGLKVLYPGLEDHPHHELLKS 340
A A + + G++ P D P +L++S
Sbjct: 284 TAQAIKGARFTAAMLAEFGVEA-DPVW-DAPRTDLIQS 319
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 1e-07
Identities = 50/304 (16%), Positives = 89/304 (29%), Gaps = 108/304 (35%)
Query: 159 FPRACNI--TTTFVDISDHEMVNSAIVQGRTKVLYFESISNP-----TLA----VANIP- 206
F +C I TT F ++D + T + + S + +
Sbjct: 262 FNLSCKILLTTRFKQVTD------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 207 -ELSRLAHDKGVTVVVDNTFSPLVLS---------PAR------LGADVVVHSISKFISG 250
+L R T +P LS A + D + I ++
Sbjct: 316 QDLPREVL----------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 251 ------------------GADIIAGAVC-----GPANLVNSMMD-LHQGALMLLGPTMNP 286
A I + + V +++ LH+ +L+ P
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QP 421
Query: 287 KVAFELSERIPHLGLRMKEHC------HRALIFARRM-KKLGLKVLYPGLED-----H-P 333
K E + IP + L +K HR+++ + K L P D H
Sbjct: 422 K---ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 334 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 393
HH + N E+ E+ L + + F F+ + + T + SG
Sbjct: 479 HH-----LKNIEHP------------ERMT-LFRMV--FLDFRFLEQKIRHDSTAWNASG 518
Query: 394 SSTS 397
S +
Sbjct: 519 SILN 522
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 14/136 (10%)
Query: 170 VDISDHEMVNSAIVQGRTKVLYFESISNPT---LAVANIPELSRLAHDKGVTVVVDN--- 223
VD E + + +GR + +NPT L + L+ +A + +++DN
Sbjct: 191 VDFEALENLPALK-EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYG 249
Query: 224 --TFSPLVLSPARLGADVVVH--SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 279
+ + + + S+SK G G + A ++ ++ ++ L
Sbjct: 250 MPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRT--GIIVADAKVIEAVSAMNAVV-NL 306
Query: 280 LGPTMNPKVAFELSER 295
+A L
Sbjct: 307 APTRFGAAIATPLVAN 322
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 27/99 (27%)
Query: 186 RTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFSPL--------VLSPAR 234
++ S +NPT ++ EL A ++ D +S + +L
Sbjct: 154 EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACM 213
Query: 235 LGAD------VVVHSISK----------FISGGADIIAG 257
L + +V+HS+SK FI+G + ++
Sbjct: 214 LAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEK 252
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 11/167 (6%)
Query: 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPA 233
+ + +G + + ++ +++++ + V ++V+ ++ + +S
Sbjct: 137 QTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLK 196
Query: 234 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH----QGALMLLGPTMNPKVA 289
+GAD +V S K S A G + ++ + LLG T
Sbjct: 197 EIGADFIVGSGHK--SMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATI 254
Query: 290 FELSERIPHLGLRMKEHCH---RALIFARRMKKLGLKVLYPGLEDHP 333
L PH+ R+K +A FA M+KLG+K L +H
Sbjct: 255 ITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHD 301
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 35/232 (15%)
Query: 106 RQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAART----LYGGTHAL-LTHFFP 160
+Q+ + + S I SV+ G ++ AR + HAL ++
Sbjct: 64 KQVEKHSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVL---HALDISQQEG 120
Query: 161 RACNITTTFVDISDHEM-VNSAIVQGRTKVLYFESISNPTL--AVANIPELSRLAHDKGV 217
I T +++H VN + + L ++ P N+ E+ + H +
Sbjct: 121 HF--IETHQSPLTNHYNKVNLSRLNNDGHKLVV--LTYPNYYGETFNVEEVIKSLHQLNI 176
Query: 218 TVVVDN------TFSPLVLSPARLGADVVVHSISK---FISGGADIIAGAVCGPANLVNS 268
V++D S AD VV S K ++ G+ + +
Sbjct: 177 PVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIE 236
Query: 269 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320
+ Q + ++ + + + + L FA+R + +
Sbjct: 237 YLSYFQTSSP----------SYLIMASL-ESAAQFYKTYDSTLFFAKRAQLI 277
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 183 VQGRTKVLYFESISNPT---LAVANIPELSRLAHDKGVTVVVDN----TFSPLVLSPAR- 234
+ T ++ +NPT + + +L RLA+ + +V+DN F ++ S AR
Sbjct: 177 IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARP 236
Query: 235 LGADVVVH--SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
L ++ S+SK G+ G + + ++ +++ L M P + E+
Sbjct: 237 LWNPNIILCMSLSKLGLPGSRC--GIIIANDKTITAIANMNGII-SLAPGGMGPAMMCEM 293
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 27/99 (27%)
Query: 186 RTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS---------PLVLS-P 232
RTK+++ S +NP+ +V ++ + G + D +S L
Sbjct: 168 RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAA 227
Query: 233 ARLGAD----VVVHSISK----------FISGGADIIAG 257
A+LG ++ S+SK F++G A+++
Sbjct: 228 AQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKN 266
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 100.0 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 100.0 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 100.0 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 100.0 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 100.0 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 100.0 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 100.0 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 100.0 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 100.0 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 100.0 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 100.0 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 100.0 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 100.0 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 100.0 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 100.0 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 100.0 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 100.0 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.98 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.98 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.98 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.98 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.98 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.97 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.97 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.97 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.97 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.97 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.97 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.97 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.97 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.97 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.97 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.97 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.97 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.97 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.97 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.97 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.97 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.97 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.97 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.97 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.97 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.97 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.97 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.97 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.97 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.97 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.97 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.97 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.97 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.97 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.97 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.97 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.97 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.97 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.97 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.97 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.97 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.97 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.97 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.96 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.96 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.96 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.96 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.96 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.96 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.96 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.96 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.96 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.96 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.96 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.96 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.96 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.96 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.96 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.96 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.96 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.96 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.96 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.96 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.96 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.96 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.96 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.96 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.96 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.96 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.96 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.96 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.96 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.96 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.96 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.96 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.96 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.96 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.96 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.96 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.96 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.96 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.96 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.96 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.96 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.96 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.95 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.95 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.95 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.95 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.95 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.95 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.95 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.95 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.95 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.95 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.95 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.95 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.95 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.95 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.95 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.95 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.95 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.95 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.95 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.95 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.95 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.95 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.95 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.95 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.94 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.94 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.94 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.94 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.94 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.94 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.94 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.94 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.94 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.94 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.94 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.94 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.94 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.94 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.94 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.94 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.94 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.94 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.94 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.94 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.94 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.93 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.93 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.93 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.93 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.93 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.93 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.93 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.93 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.93 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.93 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.93 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.93 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.93 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.93 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.92 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.92 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.92 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.92 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.92 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.92 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.92 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.87 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.92 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.92 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.92 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.92 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.92 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.92 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.92 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.92 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.92 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.91 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.91 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.91 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.91 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.91 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.91 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.91 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.91 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.91 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.91 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.91 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.91 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.91 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.9 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.9 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.9 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.9 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.9 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.9 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.9 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.9 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.89 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.89 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.89 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.89 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.89 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.89 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.89 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.89 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.89 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.89 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.89 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.89 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.89 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.88 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.88 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.88 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.88 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.88 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.87 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.78 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.85 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.85 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.83 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.78 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.76 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.74 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.74 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.67 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.66 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.64 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.62 |
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=449.37 Aligned_cols=382 Identities=29% Similarity=0.447 Sum_probs=340.8
Q ss_pred CCCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe
Q 013210 37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA 116 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~ 116 (447)
..+.+.|+++|+....+.+|++++||+.++||.+++.+++.+.+.+. .+.|.|+|+.++..+++++++|+++|.+.
T Consensus 23 ~~~~~~t~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~l~~~la~~~g~~~ 98 (414)
T 3ndn_A 23 DGVSQATVGVRGGMLRSGFEETAEAMYLTSGYVYGSAAVAEKSFAGE----LDHYVYSRYGNPTVSVFEERLRLIEGAPA 98 (414)
T ss_dssp TTCCHHHHHHHTTCCCCTTCBSSCCBCCCSBBCCSSHHHHHHHHTTS----SCCCCBTTTCCHHHHHHHHHHHHHHTCSE
T ss_pred CCCCccceeeecCCCCCCCCCcCCCcccCCceecCChHHHHHHHhCC----cCCcCcCCCCChHHHHHHHHHHHHHCCCc
Confidence 34678999999655556789999999999999999998777776543 55799999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 117 AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 117 ~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
+++++||++|+.+++++++++||+|+++.+.|+++...+...+.+ .|.++.+++.+|+++|++++ +++|++|++++|+
T Consensus 99 ~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~ai-~~~t~~v~le~p~ 176 (414)
T 3ndn_A 99 AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPR-WGVQTVFVDGDDLSQWERAL-SVPTQAVFFETPS 176 (414)
T ss_dssp EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHT-SSCCSEEEEESSC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHH-cCcEEEEeCCCCHHHHHHhc-CCCCeEEEEECCC
Confidence 999999999999999999999999999999999998887554444 79999999999999999999 7789999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHHHhh
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQ 274 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~ 274 (447)
||+|.+.|+++|+++|+++|+++|+|++|+ +....+..+|+|+++.|+||+++++|..++|+++++++.+. .++....
T Consensus 177 NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~ 256 (414)
T 3ndn_A 177 NPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR 256 (414)
T ss_dssp TTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHH
Confidence 999999999999999999999999999994 44456777899999999999999988545699999988775 5655444
Q ss_pred hhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 275 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
..|..+++..++.+++.++++..+++++.++++++.++|++++. .+.+|+++++|+|++++++++ |.|+++
T Consensus 257 ----~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---g~G~~l 329 (414)
T 3ndn_A 257 ----HTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMS---GGGTVV 329 (414)
T ss_dssp ----HHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEE
T ss_pred ----HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCC---CCceEE
Confidence 45777788888888888999999999999999999999999875 789999999999999999886 789999
Q ss_pred EEEeCC-----HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013210 353 CLDMET-----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 427 (447)
Q Consensus 353 ~~~l~~-----~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 427 (447)
+|++++ .+.+.+|++.|+. ++ +++|+|+.+|++++|++++|..++++++.++|+.+++||||+| .|++++
T Consensus 330 ~~~l~~~~~~~~~~~~~~~~~l~~---~~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG-~e~~~d 404 (414)
T 3ndn_A 330 TFALDCPEDVAKQRAFEVLDKMRL---ID-ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG-LEDTDD 404 (414)
T ss_dssp EEEECSCGGGHHHHHHHHHHHCSS---SE-ECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC-SSCHHH
T ss_pred EEEEcCCccccHHHHHHHHHhCcc---ce-EcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHH
Confidence 999975 6678899999987 34 7999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHH
Q 013210 428 RWSQFEKAL 436 (447)
Q Consensus 428 ~i~~l~~al 436 (447)
++++|.+||
T Consensus 405 li~dl~~al 413 (414)
T 3ndn_A 405 LIADIDRAL 413 (414)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999998
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-57 Score=453.84 Aligned_cols=380 Identities=29% Similarity=0.454 Sum_probs=291.9
Q ss_pred chhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.|+++|+. .....+|++++|||.++||.+++.+++.+.+.+. ...|.|+|+.+|..+++++++|+++|.+.++
T Consensus 26 ~~~t~~~h~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v 101 (430)
T 3ri6_A 26 GFTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGR----ALGHVYSRSSNPTVEDLEQRLKNLTGALGVL 101 (430)
T ss_dssp CHHHHHHCCC------------------------------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcchhheeCCCCCCCCCCCcCCCcccccccccCCHHHHHHHhhcc----cCCccccCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3788898865 3445689999999999999999987776665443 4579999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+.+++++++++||+|+++.+.|+++...+...+.. .|+++++++.+|+++|++++ +++|++|++++|+||
T Consensus 102 ~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~~~~v~~~d~~~l~~ai-~~~t~~v~~e~p~Np 179 (430)
T 3ri6_A 102 ALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPS-FGIEVRFVDVMDSLAVEHAC-DETTKLLFLETISNP 179 (430)
T ss_dssp EESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTT
T ss_pred EECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhh-CCCCeEEEEECCCCC
Confidence 9999999999999999999999999999999998876544444 79999999999999999999 789999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEE--cChHH----------
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC--GPANL---------- 265 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~--~~~~~---------- 265 (447)
+|.+.|+++|+++|+++|+++|+|++| .+..+++..+|+|++++|+||+++++|..+||+++ .+..+
T Consensus 180 tG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~ 259 (430)
T 3ri6_A 180 QLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYY 259 (430)
T ss_dssp TCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHH
T ss_pred CCeecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhh
Confidence 999999999999999999999999999 55557888889999999999999999988889988 33222
Q ss_pred --------HHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchh
Q 013210 266 --------VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHH 335 (447)
Q Consensus 266 --------~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~ 335 (447)
+..++. ......|..+++..+++++++++++..+++++.+++.++.++|++++. +|.+|+++++|+|
T Consensus 260 ~~~g~~~~i~~~~~---~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~ 336 (430)
T 3ri6_A 260 AKAGPMAFLYKARK---EVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFY 336 (430)
T ss_dssp HHHGGGHHHHHHHH---THHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTH
T ss_pred hhhchhhHHHHHHH---HHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccH
Confidence 222221 112256778889999998889999999999999999999999998865 7999999999999
Q ss_pred HHHHHHhccCCCcCc-EEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCe
Q 013210 336 ELLKSMANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 414 (447)
Q Consensus 336 ~l~~~~~~~~~g~g~-~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~ 414 (447)
+++++++ |+|+ +++|++++.+.+.+|++.++.. + +++|+|+.+|++++|++++|..++++++.+.|+.+++
T Consensus 337 ~~~~~~~----g~Gg~~lsf~l~~~~~~~~~~~~l~~~---~-~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~l 408 (430)
T 3ri6_A 337 AIAKRQF----RYAGSILTFELESKEASYRFMDALKLI---R-RATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAM 408 (430)
T ss_dssp HHHHHHC----SSCCSEEEEECSSHHHHHHHHHHCSSS---E-ECSCCSCSSCEEECTGGGC---------CGGGSCTTE
T ss_pred HHHHHhC----CCCceEEEEEECCHHHHHHHHHhCCcc---e-ecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCe
Confidence 9999987 6888 9999999878899999999973 3 7999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Q 013210 415 VRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 415 iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
||||+| .|++++++++|.+||+
T Consensus 409 iRlsvG-~E~~~dl~~dl~~al~ 430 (430)
T 3ri6_A 409 MRLSVG-IEEIEDLKEDILQALC 430 (430)
T ss_dssp EEEECC-SSCHHHHHHHHHHHHC
T ss_pred EEEEec-cCCHHHHHHHHHHhhC
Confidence 999999 9999999999999983
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-55 Score=438.31 Aligned_cols=386 Identities=29% Similarity=0.495 Sum_probs=339.2
Q ss_pred CCCCch-hhHhhhcCCC-C--CCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHH
Q 013210 36 AAWEDP-AAALASARHE-F--GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111 (447)
Q Consensus 36 ~~~~~~-~~~~~~~~~~-~--~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l 111 (447)
.+++.| .|+++|+... . ..++++.+|||.++||.+++.+++.+.+... .+.|.|+|+.++..+++|++||++
T Consensus 51 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~~~~~~l~~~lA~l 126 (445)
T 1qgn_A 51 ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKR----RASFEYGRYGNPTTVVLEEKISAL 126 (445)
T ss_dssp CTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTS----SCCCCBGGGCCHHHHHHHHHHHHH
T ss_pred cccCCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccc----cCCccccCCCChHHHHHHHHHHHH
Confidence 455677 8888885443 3 4589999999999999999988777776553 457999999999999999999999
Q ss_pred hCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCc-eEE
Q 013210 112 EGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRT-KVL 190 (447)
Q Consensus 112 ~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t-~lV 190 (447)
+|++..++++||++|+++++++++++||+|+++.+.|+++...+...+.+ .|+++++++.+|+++|++++ +++| ++|
T Consensus 127 ~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~ai-~~~tv~lV 204 (445)
T 1qgn_A 127 EGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVIDPADVGALELAL-NQKKVNLF 204 (445)
T ss_dssp HTCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECSSCHHHHHHHH-HHSCEEEE
T ss_pred hCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCCCCEE
Confidence 99988899999999999999999999999999999999988876544555 79999999999999999999 6788 999
Q ss_pred EEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHH
Q 013210 191 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM 269 (447)
Q Consensus 191 ~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l 269 (447)
++++|+||+|.+.|+++|+++|+++|+++|+|++| .+....+..+++|++++|+||++|++|+..+|++++++++++.+
T Consensus 205 ~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l 284 (445)
T 1qgn_A 205 FTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEI 284 (445)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHH
T ss_pred EEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHHHH
Confidence 99999999999999999999999999999999999 45556677789999999999999988864459999999998888
Q ss_pred HHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCC
Q 013210 270 MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 270 ~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
...+. ..|..+++..++.+++.++++..+++++.++++++.++|++++. .+.+|+++++|+|++++++++ |
T Consensus 285 ~~~~~----~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---g 357 (445)
T 1qgn_A 285 RNLHH----ILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---G 357 (445)
T ss_dssp HHHHH----HHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCS---C
T ss_pred HHHHH----HhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhcc---C
Confidence 76554 56777778777877888899999999999999999999999865 688999999999999999876 6
Q ss_pred cCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013210 348 FGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 426 (447)
Q Consensus 348 ~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~ 426 (447)
.|++++|.+++ .+.+..+++.|+. |+ +++|+|++|+++.+|+..+|..++++++.++|+++++||||+| .++++
T Consensus 358 ~g~ivsf~l~~~~~~~~~~l~~l~~---~~-i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG-~Edid 432 (445)
T 1qgn_A 358 FGGAVSFEVDGDLLTTAKFVDALKI---PY-IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-VEDFD 432 (445)
T ss_dssp CCSEEEEEESSCHHHHHHHHHHCSS---SE-ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-SSCHH
T ss_pred CCcEEEEEECCCHHHHHHHHHhCCC---ce-EeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec-cCCHH
Confidence 89999999985 3558889999885 33 7999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHh
Q 013210 427 QRWSQFEKALSRM 439 (447)
Q Consensus 427 ~~i~~l~~al~~~ 439 (447)
+++++|.++|+++
T Consensus 433 ~li~~L~~al~~~ 445 (445)
T 1qgn_A 433 DLKADILQALDSI 445 (445)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999753
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-54 Score=432.80 Aligned_cols=372 Identities=35% Similarity=0.554 Sum_probs=330.6
Q ss_pred CchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
+++.|+++|+. .....+|++++|||.++||.+++.+. ...|.|+|+.+|...+++++||+++|.+.+
T Consensus 18 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~------------~~~~~y~r~~~p~~~~l~~~la~l~g~~~~ 85 (400)
T 3nmy_A 18 LSLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGE------------HQGFEYSRTHNPTRFAYERCVAALEGGTRA 85 (400)
T ss_dssp CCHHHHHHHTTCCCCTTTCBSSCCBCCCSBBBCSBTTB------------SSSCCBTTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred CCcchheeeCCCCCCCCCCCcCCCccccceeeccCccc------------cCCcccccCCCHHHHHHHHHHHHHhCCCCE
Confidence 56888898854 44456899999999999999987531 246899999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhh-cCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF-FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~-~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
++++||++|+.+ +..++++||+|+++.+.|+++...+... +.+ .|+++.+++.+|+++|++++ ++++++|++++|+
T Consensus 86 ~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~e~~~ 162 (400)
T 3nmy_A 86 FAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRT-AGLDFSFVDLTDPAAFKAAI-RADTKMVWIETPT 162 (400)
T ss_dssp EEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHH-HCCEEEEECTTSHHHHHHHC-CTTEEEEEEESSC
T ss_pred EEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhh-cCeEEEEECCCCHHHHHHHh-ccCCCEEEEECCC
Confidence 999999999998 5678899999999999999888777544 444 69999999999999999999 7899999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCccccCCCCeeEE-EEE-cChHHHHHHHHHh
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAG-AVC-GPANLVNSMMDLH 273 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG-~l~-~~~~~~~~l~~~~ 273 (447)
||+|.+.|+++|+++|++||+++|+|++|+ +....+..+|+|++++|+||+++++|.++|| +++ .++++++.+...+
T Consensus 163 np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~ 242 (400)
T 3nmy_A 163 NPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQ 242 (400)
T ss_dssp TTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHH
T ss_pred CCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHH
Confidence 999999999999999999999999999994 4455777889999999999999999988888 554 5778888887766
Q ss_pred hhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013210 274 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL 351 (447)
Q Consensus 274 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~ 351 (447)
. ..|..+++..++.+++.++++..+++++.+++..+.++|++++. .+.+|+++++|+|++++++++ |.|++
T Consensus 243 ~----~~g~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~---g~G~~ 315 (400)
T 3nmy_A 243 N----SIGGVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMS---GFGGI 315 (400)
T ss_dssp H----HHCCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSE
T ss_pred H----hcCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCC---CCCce
Confidence 5 56777888888888888999999999999999999999998876 789999999999999999986 78999
Q ss_pred EEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013210 352 LCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 430 (447)
Q Consensus 352 ~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~ 430 (447)
++|++++ .+.+.+|++.++.. + +++|+|+.+|++++|+..+|..++++++.++|+++++||+|+| .|+++++++
T Consensus 316 ~~~~l~~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-le~~~dli~ 390 (400)
T 3nmy_A 316 VSIVLKGGFDAAKRFCEKTELF---T-LAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVG-IEDLGDLRG 390 (400)
T ss_dssp EEEEETTHHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHcCCcc---e-EecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeC-cCCHHHHHH
Confidence 9999985 35678899999873 3 7999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHH
Q 013210 431 QFEKALS 437 (447)
Q Consensus 431 ~l~~al~ 437 (447)
+|.+||+
T Consensus 391 dl~~al~ 397 (400)
T 3nmy_A 391 DLERALV 397 (400)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9999997
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-55 Score=436.31 Aligned_cols=379 Identities=21% Similarity=0.358 Sum_probs=327.3
Q ss_pred chhhHhhhcCCC-CCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASARHE-FGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~~~-~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
.+.|+++|+... ...+|++++|||.++||.+++.+++.+.+.+.. ...|.|+|+.+|.++++|+++|+++|++.++
T Consensus 25 ~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~---~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i 101 (415)
T 2fq6_A 25 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRA---NGELFYGRRGTLTHFSLQQAMCELEGGAGCV 101 (415)
T ss_dssp CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTT---TTSCCCTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcCceeEeCCCCCCCCCCCEeCCeecccceeeCCHHHHHHhhcccc---CCCccccCCCCchHHHHHHHHHHHhCCCeEE
Confidence 477888886543 345799999999999999999988888876541 2469999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+++++++++++||+|+++.++|+++...+...+.+ .|+++++++.+|+++|++++ +++|++|++++|+||
T Consensus 102 ~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~-~G~~v~~v~~~d~~~le~ai-~~~tklV~~e~~~Np 179 (415)
T 2fq6_A 102 LFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFDPLIGADIVKHL-QPNTKIVFLESPGSI 179 (415)
T ss_dssp EESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECTTCGGGGGGGC-CTTEEEEEEESSCTT
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhh-ccCCcEEEEECCCCC
Confidence 9999999999999999999999999999999998888655555 79999999999999999999 788999999999999
Q ss_pred CccccCHHHHHHHHHh--cCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh
Q 013210 199 TLAVANIPELSRLAHD--KGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 275 (447)
Q Consensus 199 tG~v~~l~~I~~la~~--~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~ 275 (447)
+|.++|+++|+++|++ +|+++|+|++|+ ++...+..+++|++++|+||+++++|++++|++++++++++.+...+.
T Consensus 180 tG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~- 258 (415)
T 2fq6_A 180 TMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY- 258 (415)
T ss_dssp TCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH-
T ss_pred CCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHH-
Confidence 9999999999999999 999999999994 455667778999999999999999998777999998888887776554
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|..+++..++.+++.++++..+++++.+++..++++|++++. .+.+|+++.+|++++++++++ +.|++++
T Consensus 259 ---~~G~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---~~g~i~s 332 (415)
T 2fq6_A 259 ---LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT---GSSGLFS 332 (415)
T ss_dssp ---HTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCCSEEE
T ss_pred ---hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCceEEE
Confidence 45667778777777777788888999999999999999999865 678999999999999998764 6789999
Q ss_pred EEeCC---HHHHHHHHHHhhcccccccccccccCccccccc--cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013210 354 LDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC--SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428 (447)
Q Consensus 354 ~~l~~---~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~--~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 428 (447)
|.+++ .+.+..|++.|+. ++ +++|+|++||++.+ |+..++... ..++|++++.||||+| .++++++
T Consensus 333 f~l~g~~~~~~~~~~l~~l~~---~~-~a~s~G~~~s~~~~~~p~~~s~~~~----~~~~g~~~~~iRlS~G-~e~~~d~ 403 (415)
T 2fq6_A 333 FVLKKKLNNEELANYLDNFSL---FS-MAYSWGGYESLILANQPEHIAAIRP----QGEIDFSGTLIRLHIG-LEDVDDL 403 (415)
T ss_dssp EEESSCCCHHHHHHHHTTCSS---CE-ECSCCCSSSCEEEEECHHHHHTTCT----TCCCCCCSCEEEEECC-SSCHHHH
T ss_pred EEECCCCCHHHHHHHHHhCCc---Ce-EeccCCCCceeEEecCCCccccccc----hhhcCCCCCEEEEEec-CCCHHHH
Confidence 99986 5678999999886 33 79999999999987 766553211 0246888899999999 9999999
Q ss_pred HHHHHHHHHHh
Q 013210 429 WSQFEKALSRM 439 (447)
Q Consensus 429 i~~l~~al~~~ 439 (447)
|++|.++|+++
T Consensus 404 i~~l~~al~~~ 414 (415)
T 2fq6_A 404 IADLDAGFARI 414 (415)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999999864
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-52 Score=418.06 Aligned_cols=370 Identities=32% Similarity=0.459 Sum_probs=326.3
Q ss_pred CchhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
+.+.|+++|+. .....++++.+||+.++||.+++.+ ++.+.|.|+|+.++.+++++++||+++|.+.+
T Consensus 16 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~-----------~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~ 84 (392)
T 3qhx_A 16 AGLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGVG-----------GLRGGYEYARTGNPTRTALEAALAAVEDAAFG 84 (392)
T ss_dssp CCHHHHHHHSSCCCCTTTCBSSCCBCCCSBBCCSSTT-----------CCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEE
T ss_pred CCcchhheeCCCCCCCCCCCccCCcccCcceEecCcc-----------cccCCccccCCCChHHHHHHHHHHHHhCCCcE
Confidence 37889999854 4445689999999999999987642 23457999999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
++|+||++|+++++++++++||+|+++.++|+++...+...... .|+++.+++.+|+++|++++ ++++++|++++|+|
T Consensus 85 ~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~n 162 (392)
T 3qhx_A 85 RAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTG-WNVEYTPVALADLDAVRAAI-RPTTRLIWVETPTN 162 (392)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCT
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHh-cCcEEEEeCCCCHHHHHHhh-CCCCeEEEEECCCC
Confidence 99999999999999999999999999999999998887555555 79999999999999999999 78999999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhh
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQG 275 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~ 275 (447)
|+|.+.|+++|+++|+++|+++|+|++| .++...+..+++|+++.|+||++|++|+.++|+++.+ +++.+.+...+.
T Consensus 163 ptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~- 241 (392)
T 3qhx_A 163 PLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQN- 241 (392)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH-
T ss_pred CCcEEecHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHH-
Confidence 9999999999999999999999999999 4555677788999999999999999885445999887 688888876665
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|...++..++.+++.++.+..+++++.++++++.++|++++. .+.+|+++++|+|++++++++ |.|++++
T Consensus 242 ---~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~~~ 315 (392)
T 3qhx_A 242 ---GAGAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR---GFGGMVS 315 (392)
T ss_dssp ---HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEE
T ss_pred ---hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCC---CCceEEE
Confidence 45667777788887778888888999999999999999998865 789999999999999999886 7899999
Q ss_pred EEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013210 354 LDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 432 (447)
Q Consensus 354 ~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 432 (447)
|++++ .+.++.|++.|+.. + +++|+|+.++++++|++.++..++.+ .+|+.+++||||+| .++++++|++|
T Consensus 316 ~~l~~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg-~e~~~~~i~~l 387 (392)
T 3qhx_A 316 VRMRAGRTAAEQLCAKTNIF---I-LAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVG-IEDVADLLDDL 387 (392)
T ss_dssp EEETTCHHHHHHHHHHCSSS---E-ECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECC-SSCHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHhCCCc---e-ECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEec-cCCHHHHHHHH
Confidence 99985 56688999999873 4 79999999999999998888777665 68999999999999 99999999999
Q ss_pred HHHH
Q 013210 433 EKAL 436 (447)
Q Consensus 433 ~~al 436 (447)
.++|
T Consensus 388 ~~al 391 (392)
T 3qhx_A 388 KQAL 391 (392)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9987
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-51 Score=409.75 Aligned_cols=380 Identities=33% Similarity=0.505 Sum_probs=331.5
Q ss_pred chhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 40 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
++.|.++|+. ....+|++.+|||.++||.+++.+++.+.+.+. ...|.|+|+.++...++++.+|+++|.+.+++
T Consensus 5 ~~~t~~~~~~-~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~ 79 (389)
T 3acz_A 5 DITTTLLHPK-GDHVLHSHAYPIFQTSTFCFDSTQQGADLFMGK----GEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAA 79 (389)
T ss_dssp CHHHHHHSCS-SCCSTTBSSCCBCCCSBBCCSSHHHHHHHHTTC----SSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcceeEEecC-CCCCCCCCCCCcccCCceecCChHHHHHhhcCC----CCCcccCCCCChHHHHHHHHHHHHhCCCeEEE
Confidence 5778888866 445689999999999999999998888877653 35689999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
++||++|+.+++++++++||+|+++.+.|+++...+...... .|+++.+++..|++++++++ ++++++|++++|+||+
T Consensus 80 ~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~npt 157 (389)
T 3acz_A 80 FGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPR-FGIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPANPT 157 (389)
T ss_dssp ESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHH-TTCEEEEECTTCHHHHHHTC-CTTEEEEEEESSCTTT
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCCC
Confidence 999999999999988999999999999999988776444444 79999999999999999999 7789999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGAL 277 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~ 277 (447)
|.+.|+++|.++|+++|+++|+|++|+ +....+..+++|++++|+||+++++|+|+||+++.++ ++++.+.....
T Consensus 158 G~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~--- 234 (389)
T 3acz_A 158 CKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRK--- 234 (389)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH---
T ss_pred CeecCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHH---
Confidence 999999999999999999999999994 4444667789999999999999999998889999888 88888876654
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..|...++..++.++..++.+..++++..++++.+.+.|++++. .+.+|+++++|.+.++.++.+ |.|++++|.
T Consensus 235 -~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~---g~g~~~~~~ 310 (389)
T 3acz_A 235 -DAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT---GYGSTFLFE 310 (389)
T ss_dssp -HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEE
T ss_pred -hcCCCCCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCeEEEEE
Confidence 34566677777777778888888899999999999999999875 788999999999999988765 678999999
Q ss_pred eCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013210 356 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 356 l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
+++.+....+++.++.. . .++|+|+.+|++++|+..+|..++++++..+|++++.||||+| .+++++++++|.++
T Consensus 311 l~~~~~~~~~l~~~~i~---~-~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~~~~~~li~~l~~a 385 (389)
T 3acz_A 311 MKSFEAAKKLMEHLKVC---T-LAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADLKQA 385 (389)
T ss_dssp ESSHHHHHHHHTTCSSS---E-EBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhCCCc---E-ECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHHH
Confidence 98655566676666542 2 5889999999999999999999999999999999999999999 99999999999999
Q ss_pred HHH
Q 013210 436 LSR 438 (447)
Q Consensus 436 l~~ 438 (447)
|++
T Consensus 386 l~~ 388 (389)
T 3acz_A 386 LEL 388 (389)
T ss_dssp HTC
T ss_pred Hhh
Confidence 864
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=403.32 Aligned_cols=377 Identities=28% Similarity=0.430 Sum_probs=320.4
Q ss_pred CCCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe
Q 013210 37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA 116 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~ 116 (447)
+++++.|+++|+....+.+|++.+|||.++||.+++.+. ..+.|.|+|+.++..+++|+++|+++|.+.
T Consensus 4 ~~~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~lr~~la~~~g~~~ 72 (393)
T 1n8p_A 4 ESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPAN-----------PIGTYEYSRSQNPNRENLERAVAALENAQY 72 (393)
T ss_dssp SSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSS-----------BSSSCCBTTTCCHHHHHHHHHHHHHTTCSE
T ss_pred CCCCccceEEecCCCccCCCCcCCCcccccceeeccccc-----------cccCcceecCCChhHHHHHHHHHHHhCCCc
Confidence 445788888885433337899999999999999976311 124689999999999999999999999988
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 117 AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 117 ~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
+++++||++|++++++ ++++||+|+++.++|+++...+...+.. .|.++.+++.+| ++|++++ +++|++|++++|+
T Consensus 73 ~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d-~~l~~~i-~~~t~lv~~~~~~ 148 (393)
T 1n8p_A 73 GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANA-HGVETSFTNDLL-NDLPQLI-KENTKLVWIETPT 148 (393)
T ss_dssp EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTT-TCSCCEEESSHH-HHHHHHS-CSSEEEEEECSSC
T ss_pred EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEeCCCh-HHHHHhc-ccCceEEEEECCC
Confidence 9999999999999999 8899999999999999887766445554 799999999888 9999999 7789999999999
Q ss_pred CCCccccCHHHHHHHHHhc----CCEEEEeCCCCCC-CCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHH
Q 013210 197 NPTLAVANIPELSRLAHDK----GVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMM 270 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~----gi~livD~~~~~~-~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~ 270 (447)
||+|.++|+++|.++|+++ |+++|+|++|+.+ ..++..+++|+++.|+||++|++|+|+||+++. ++++++.+.
T Consensus 149 nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~ 228 (393)
T 1n8p_A 149 NPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ 228 (393)
T ss_dssp TTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH
T ss_pred CCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHH
Confidence 9999999999999999999 9999999999433 236667799999999999999999999899987 578888887
Q ss_pred HHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC---eeeCCCCCCCchhHHHHHHhccCCC
Q 013210 271 DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL---KVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 271 ~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~---~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
..+. ..|..+++..++.+...++.+..++++..++++.+.+.|++++. .+.+|++.++|.++++.+.++ +
T Consensus 229 ~~~~----~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~---~ 301 (393)
T 1n8p_A 229 FLQN----AIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHR---D 301 (393)
T ss_dssp HHHH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSG---G
T ss_pred HHHH----hcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCC---C
Confidence 6654 34555566666666666778888889999999999999988753 567899888999999987765 3
Q ss_pred -c-CcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013210 348 -F-GGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 424 (447)
Q Consensus 348 -~-g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~ 424 (447)
. |++++|.+++ ...+..+++.++.. + +++|+|++|++..+|+..+|..++.+++.++|++++.||||+| .++
T Consensus 302 ~~~~~i~~~~l~~~~~~~~~~l~~l~~~---~-~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g-~~~ 376 (393)
T 1n8p_A 302 ALGGGMISFRIKGGAEAASKFASSTRLF---T-LAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG-IED 376 (393)
T ss_dssp GCCCSEEEEEESSCHHHHHHHHHHCSSS---E-ECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC-SSC
T ss_pred CCCccEEEEEeCCcHHHHHHHHhhCCcc---e-ECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEc-cCC
Confidence 5 8899999984 45688899998763 3 6999999999999999889988888899999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhh
Q 013210 425 LDQRWSQFEKALSRMQ 440 (447)
Q Consensus 425 ~~~~i~~l~~al~~~~ 440 (447)
++++|++|.++|+++.
T Consensus 377 ~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 377 TDDLLEDIKQALKQAT 392 (393)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=397.51 Aligned_cols=378 Identities=29% Similarity=0.455 Sum_probs=313.9
Q ss_pred CCCchhhHhhhcCCC-CCCC-CccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC
Q 013210 37 AWEDPAAALASARHE-FGEH-GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~-~~~~-~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~ 114 (447)
+++.+.|+++|+... ...+ |++.+|||.+|||.+++..+ ...|.|+|+.++...++|+.+|+++|.
T Consensus 15 ~~~~~~t~~~h~g~~~~~~~~~~~~~pi~~stt~~~~~~~~------------~~~~~y~r~~~p~~~~l~~~la~~~g~ 82 (403)
T 3cog_A 15 HFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQ------------HSGFEYSRSGNPTRNCLEKAVAALDGA 82 (403)
T ss_dssp CCTTHHHHHHHTTCCGGGSTTCBSSCCBCCCSCBCCC--------------------------CHHHHHHHHHHHHHHTC
T ss_pred ccCCcccEEEeCCCCCCcCCCCCccCCeeccceeecCCccc------------cCCCcccCCCCchHHHHHHHHHHHhCC
Confidence 345788999996543 4456 89999999999999887532 124779999999999999999999999
Q ss_pred CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEc
Q 013210 115 EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 194 (447)
Q Consensus 115 ~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~ 194 (447)
+..+++++|++|+.++++ ++++||+|+++.+.|++++..+...... .|+++.+++.+|+++|++++ +++|++|++++
T Consensus 83 ~~~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~t~~v~~~~ 159 (403)
T 3cog_A 83 KYCLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASE-FGLKISFVDCSKIKLLEAAI-TPETKLVWIET 159 (403)
T ss_dssp SEEEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGG-GTCEEEEECTTSHHHHHHHC-CTTEEEEEEES
T ss_pred CcEEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CcCCeEEEEEC
Confidence 888888899999999998 8899999999999999988777555554 79999999999999999999 78899999999
Q ss_pred CCCCCccccCHHHHHHHHHhcC-CEEEEeCCCCCC-CCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHH
Q 013210 195 ISNPTLAVANIPELSRLAHDKG-VTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMD 271 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~g-i~livD~~~~~~-~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~ 271 (447)
|+||+|.+.|+++|+++|+++| +++|+|++|+.+ ...+..+++|++++|+||+++++|++.+|++++ ++++++.+..
T Consensus 160 p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~ 239 (403)
T 3cog_A 160 PTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF 239 (403)
T ss_dssp SCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH
T ss_pred CCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH
Confidence 9999999999999999999999 999999999443 345667899999999999999888754599988 4788888876
Q ss_pred HhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013210 272 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG 349 (447)
Q Consensus 272 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g 349 (447)
... ..|...++..++++.+.++++..+++++.+++..+.++|++++. ++.+|+++++|++.++.+..+ +.|
T Consensus 240 ~~~----~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g 312 (403)
T 3cog_A 240 LQN----SLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---GCT 312 (403)
T ss_dssp HHH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCC
T ss_pred HHH----hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCC---CCc
Confidence 655 34556667777777777788888999999999999999998876 788999999999999887654 679
Q ss_pred cEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013210 350 GLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428 (447)
Q Consensus 350 ~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 428 (447)
++++|.++ ..+...++++.++... .++|+|+.+|++++|+..+|...+++++..+|+++++||||+| .++++++
T Consensus 313 ~~~~~~l~~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg-~e~~~d~ 387 (403)
T 3cog_A 313 GMVTFYIKGTLQHAEIFLKNLKLFT----LAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG-LEDEEDL 387 (403)
T ss_dssp SEEEEEESSCHHHHHHHHHHCSSSE----ECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHH
T ss_pred eEEEEEecCCHHHHHHHHHhCCcce----EccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCHHHH
Confidence 99999997 3455777777776522 5899999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHhhh
Q 013210 429 WSQFEKALSRMQD 441 (447)
Q Consensus 429 i~~l~~al~~~~~ 441 (447)
|++|.++|+++.+
T Consensus 388 i~~l~~al~~~~~ 400 (403)
T 3cog_A 388 LEDLDQALKAAHP 400 (403)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987754
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=395.99 Aligned_cols=382 Identities=36% Similarity=0.505 Sum_probs=298.1
Q ss_pred chhhHhhhcCC-CCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASARH-EFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~~-~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.|.++|+.. ....++++.+|+++++|+.++++++.... ++|+.+.|.|+|+.++..+++++.+++++|.+..+
T Consensus 9 ~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i 84 (398)
T 1gc0_A 9 GFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAAC----FAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGL 84 (398)
T ss_dssp CHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC-------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcCceeEeCCCCCCCCCCCcCCCccCCCccccCCHHHHHHh----hcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEE
Confidence 57788888543 34467999999999999999987554432 55667789999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+++++++++++||+|+++.+.|+++...+...... .|+++.+++.+|+++|++++ ++++++|++++|+||
T Consensus 85 ~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~np 162 (398)
T 1gc0_A 85 ALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAM-TPATRVIYFESPANP 162 (398)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTT
T ss_pred EECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECCCCC
Confidence 9999999999999999999999999999999998877544444 79999999999999999999 778999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHHHhhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGA 276 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~~~ 276 (447)
+|.+.|+++|.++|+++|+++|+|++|+. ....+..+++|+++.|+||+++++|+++||+++.+++.+. .+.....
T Consensus 163 tG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~-- 240 (398)
T 1gc0_A 163 NMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLK-- 240 (398)
T ss_dssp TCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHH--
T ss_pred CcccccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhh--
Confidence 99999999999999999999999999943 2334556789999999999999999888899999987765 4554433
Q ss_pred hhh-cCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 277 LML-LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 277 ~~~-~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
. .+.+.++..++.+...++++..++++..++++.+.+.|++++. .+.+|+++++|+++++.+..+ +.|++++
T Consensus 241 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~---~~~~~~~ 315 (398)
T 1gc0_A 241 --DMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS---QPGGMIA 315 (398)
T ss_dssp --HHTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-------------------CCTTEEE
T ss_pred --ccCCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCC---CCceEEE
Confidence 2 4555666666666667788888999999999999999998865 677899988999888876544 5789999
Q ss_pred EEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013210 354 LDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 432 (447)
Q Consensus 354 ~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 432 (447)
|.+++. +.+..+++.++... .++|+|++++++++|+..+|...+++++..+|++++.||||+| .++++++|++|
T Consensus 316 ~~l~~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~~~~~~~i~~l 390 (398)
T 1gc0_A 316 FELKGGIGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG-LEDIDDLLADV 390 (398)
T ss_dssp EEETTHHHHHHHHHHHCSSSE----ECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHH
T ss_pred EEECCCHHHHHHHHHhCCCce----eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHH
Confidence 999853 45677777776532 6889999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHh
Q 013210 433 EKALSRM 439 (447)
Q Consensus 433 ~~al~~~ 439 (447)
.++|+++
T Consensus 391 ~~al~~~ 397 (398)
T 1gc0_A 391 QQALKAS 397 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999864
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-49 Score=394.32 Aligned_cols=384 Identities=30% Similarity=0.426 Sum_probs=321.8
Q ss_pred chhhHhhhcC-CCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.|+++|+. .....+|++.+||++++||.+++++++.+.+.. +...|.|+|..++...++++++|+++|.+..+
T Consensus 2 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~----~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v 77 (421)
T 2ctz_A 2 RFETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFAL----KEFGNIYSRIMNPTVDVLEKRLAALEGGKAAL 77 (421)
T ss_dssp CHHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTT----TTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcceeeeeCCCCCCcCCCCccCCeeccceeeeCCHHHHHHhhcc----ccCCCcccCCCChHHHHHHHHHHHHhCCCceE
Confidence 4677888854 334468999999999999999998777766642 34578999999999999999999999998888
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe-CCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV-DISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v-~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
+++||++|+++++++++++||+|+++.++|+++...+...... .|+++.++ +.+|+++|++++ +++|++|++++++|
T Consensus 78 ~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~n 155 (421)
T 2ctz_A 78 ATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREERPEEFLALT-DEKTRAWWVESIGN 155 (421)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHH-TTCEEEECCTTCCHHHHHHHC-CTTEEEEEEESSCT
T ss_pred EecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCCHHHHHHhh-ccCCeEEEEECCCC
Confidence 8999999999999998999999999999999988876433334 79999999 988999999999 77999999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-C-CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcC--hHH----HHHH
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-S-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP--ANL----VNSM 269 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~--~~~----~~~l 269 (447)
|+|.+.|+++|.++|+++|+++|+|++| + +....+...++|++++|+||+++++|.++||+++.+ +++ ++.+
T Consensus 156 ~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l 235 (421)
T 2ctz_A 156 PALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLL 235 (421)
T ss_dssp TTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHH
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhh
Confidence 9999999999999999999999999999 4 333456667899999999999999998887777753 222 1222
Q ss_pred HH----------------------HhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eee
Q 013210 270 MD----------------------LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVL 325 (447)
Q Consensus 270 ~~----------------------~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~ 325 (447)
.. .+.......|..+.+..+++....++.+..+++++.++++++.+.|++++. .+.
T Consensus 236 ~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~ 315 (421)
T 2ctz_A 236 TEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVN 315 (421)
T ss_dssp HSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred ccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEE
Confidence 11 111111235667778888888888888888999999999999999999865 456
Q ss_pred CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHH
Q 013210 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404 (447)
Q Consensus 326 ~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~ 404 (447)
+|+++++|+|++++++++. +.|++++|.+++. +.+..+++.++.. + +++|+|+.++++.+|+..+|..++.++
T Consensus 316 ~p~~~~~~~~~~~~~~~~~--~~g~ivsf~l~~~~~~~~~~~~~l~~~---~-~~~~~G~~~sl~~~~~~~~h~~~~~~~ 389 (421)
T 2ctz_A 316 YPGLPHHPHHDRAQKYFKG--KPGAVLTFGLKGGYEAAKRFISRLKLI---S-HLANVGDTRTLAIHPASTTHSQLSPEE 389 (421)
T ss_dssp CTTSTTCTTHHHHHHHHTT--CCCSEEEEEETTHHHHHHHHHHTCSSS---E-ECSCCCCSSCEEECGGGTTTTTSCHHH
T ss_pred CCCCCCCCCHHHHHHhccC--CCceEEEEEeCCCHHHHHHHHHhCCcc---e-ecccCCCCCceeeCCcccccccCCHHH
Confidence 8999999999999988721 6899999999863 5678899998863 3 689999999999999999999999999
Q ss_pred HHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 405 KALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 405 ~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
+..+|++++.||+|+| .+++++++++|.++|
T Consensus 390 ~~~~g~~~~~vRlS~g-~e~~~~li~~l~~al 420 (421)
T 2ctz_A 390 QAQAGVSPEMVRLSVG-LEHVEDLKAELKEAL 420 (421)
T ss_dssp HHHHTCCTTEEEEECC-SSCHHHHHHHHHHHT
T ss_pred HHhcCCCCCeEEEEeC-CCCHHHHHHHHHHHh
Confidence 9999999999999999 999999999999987
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=384.79 Aligned_cols=379 Identities=31% Similarity=0.465 Sum_probs=316.5
Q ss_pred chhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 40 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
++.|.++|+....+.++++++||+.++|+.+++++.+.+.+. . ...|.|++..++..+++++.+|+++|.+.+++
T Consensus 2 ~~~t~~~~~~~~~~~~~~~~~pi~~s~~~~~~~~~~~~~~~~-~----~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~ 76 (412)
T 2cb1_A 2 EYTTLAVLAGLPEDPHGAVGLPIYAVAAYGFKTLEEGQERFA-T----GEGYVYARQKDPTAKALEERLKALEGALEAVV 76 (412)
T ss_dssp CHHHHHHHTTCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHH-H----CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CccceeeecCCCcCCCCCcCCCccccceeecCChHHHHHHhc-c----ccCcCcCCCCChHHHHHHHHHHHHhCCCcEEE
Confidence 466788885433336899999999999999999887777765 2 24688999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
|+||++|+++++++++++||+|+++.++|+++...+...+.. .|.++.+++.+ +++|++++ ++++++|++++|+||+
T Consensus 77 ~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~l~~~i-~~~~~~v~~~~~~n~~ 153 (412)
T 2cb1_A 77 LASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL-MGVTVRYVDPE-PEAVREAL-SAKTRAVFVETVANPA 153 (412)
T ss_dssp ESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTT-TTCEEEEECSS-HHHHHHHC-CTTEEEEEEESSCTTT
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCC-HHHHHHHh-ccCCeEEEEeCCCCCC
Confidence 999999999999999999999999999999988777544554 79999999875 99999999 7789999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCCCC--CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh--------------
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-------------- 263 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-------------- 263 (447)
|.+.|+++|.++|++||+++|+|++|+. +...+...++|+++.|+||+++++|+++||+++.++
T Consensus 154 G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 233 (412)
T 2cb1_A 154 LLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPD 233 (412)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-
T ss_pred cccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEecccccccccccccccc
Confidence 9999999999999999999999999943 445666778999999999999999998877776663
Q ss_pred -------------HHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCC
Q 013210 264 -------------NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-L-KVLYPG 328 (447)
Q Consensus 264 -------------~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~ 328 (447)
++.+.++... ....|..+.+..++.....++.+..++++..++++++.+.|.+++ . .+.+|+
T Consensus 234 ~~g~~~~~~~~~~~~~~~~r~~~---~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~ 310 (412)
T 2cb1_A 234 LKGQIPWEALRARCFPERVRTLG---LSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPG 310 (412)
T ss_dssp ------HHHHGGGHHHHHHHHHH---TTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTT
T ss_pred ccccchhhccchHHHHHHHHHHH---HHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCC
Confidence 3334443332 113455566777777777788888888888899999999999874 4 477899
Q ss_pred CCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhc
Q 013210 329 LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 408 (447)
Q Consensus 329 ~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~ 408 (447)
..++|+|++++++++ +.|++++|.+.+.+....+++.+.. -. +.|+|+.++++.+|+..++..++++++.++
T Consensus 311 ~~~~p~~~~~~~~~~---~~~~iv~~~~~~~~~~~~~l~~~~i----~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~ 382 (412)
T 2cb1_A 311 LPEDPAHRNARKYLA---SGGPILTLDLGDLERASRFLGAIRL----LK-AANLGDARTLLVHPWTTTHSRLKEEARLQA 382 (412)
T ss_dssp STTCTTHHHHHHHCS---SSCSEEEEECSSHHHHHHHHHHCSS----EE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHT
T ss_pred CCCCccHHHHHHhCC---CCceEEEEEeCCHHHHHHHHHhCCe----ee-ecccCCCcceeecCcccccccCCHHHHHhc
Confidence 889999999999886 6789999999444455566666543 22 678899999999999888888999999999
Q ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 409 GISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 409 g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
|++++.||+|+| .++++++|++|.++|++
T Consensus 383 g~~~~~iR~s~g-~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 383 GVTPGLVRVSVG-LEDPLDLLALFEEALEA 411 (412)
T ss_dssp TCCTTEEEEECC-SSCHHHHHHHHHHHHHC
T ss_pred CCCCCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 999999999999 99999999999999975
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=379.59 Aligned_cols=385 Identities=34% Similarity=0.557 Sum_probs=323.2
Q ss_pred CchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
+.+.|.++|+......++++.+|++.++++.+++.+++.+.+.+ +.+.|.|++.+++..+++++.+|+++|.+.++
T Consensus 6 ~~~~t~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i 81 (404)
T 1e5e_A 6 MTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAG----QESGYIYTRLGNPTVSNLEGKIAFLEKTEACV 81 (404)
T ss_dssp CCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTT----SSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CCccceeeecCCCCCCCCCcCCCCcCCCccccCCHHHHHHhhcC----CcCCccccCCcChHHHHHHHHHHHHhCCCcEE
Confidence 46788888854334457899999999999999998666555433 24568899988999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+.+++++++++||+|+++.|.|+++...+...+.. .|+++++++.+|+++|++++ +++|++|++++|+||
T Consensus 82 ~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~t~~v~l~~p~Np 159 (404)
T 1e5e_A 82 ATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTK-FGIQVDFINTAIPGEVKKHM-KPNTKIVYFETPANP 159 (404)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHHC-CTTEEEEEEESSCTT
T ss_pred EeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCcEEEEECCCCC
Confidence 9999999999999999999999999999999998855433333 79999999998999999999 778999999999999
Q ss_pred CccccCHHHHHHHHHh-cCCEEEEeCCCCCCCC-CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHHHhhh
Q 013210 199 TLAVANIPELSRLAHD-KGVTVVVDNTFSPLVL-SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQG 275 (447)
Q Consensus 199 tG~v~~l~~I~~la~~-~gi~livD~~~~~~~~-~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~~ 275 (447)
||.+.|+++|+++|++ +|+++|+|++|..+.+ .+..+++|+++.|+||+++++|+|++|++++++++++ .+...+.
T Consensus 160 tG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~- 238 (404)
T 1e5e_A 160 TLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIK- 238 (404)
T ss_dssp TCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCC-
T ss_pred CCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHH-
Confidence 9999999999999999 9999999999954432 4666799999999999999999987799999998877 7765544
Q ss_pred hhhhc-CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 276 ALMLL-GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 276 ~~~~~-g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
.. |...++..++++...++++..++++..++.+.+.++|++.+. .+.+|.+.+.|+++++....+ +.|+++
T Consensus 239 ---~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g~~~ 312 (404)
T 1e5e_A 239 ---DITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR---MYGSMI 312 (404)
T ss_dssp ---CCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCS---SCCSEE
T ss_pred ---hCCCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCceEE
Confidence 33 455566666666666677778888889999999999988764 578899999999998887654 678999
Q ss_pred EEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 353 CLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 353 ~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
.|.+++. +...+++++++.. . .++++|+.+|++++|+..++..++++++...|+++++||||+| .+++++++++
T Consensus 313 ~~~~~~~~~~~~~~l~~~~i~---~-~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~e~~~~li~~ 387 (404)
T 1e5e_A 313 TFILKSGFEGAKKLLDNLKLI---T-LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-IEDADELIAD 387 (404)
T ss_dssp EEEETTHHHHHHHHHHTCSSS---E-ESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhCCCc---e-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-CCCHHHHHHH
Confidence 9999864 3455666665532 1 5788999999999999999999999999999998899999999 8999999999
Q ss_pred HHHHHHHhhh
Q 013210 432 FEKALSRMQD 441 (447)
Q Consensus 432 l~~al~~~~~ 441 (447)
|.++++.+-+
T Consensus 388 l~~al~~~~~ 397 (404)
T 1e5e_A 388 FKQGLDALLR 397 (404)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999987643
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=366.83 Aligned_cols=383 Identities=35% Similarity=0.563 Sum_probs=317.0
Q ss_pred CchhhHhhhcCCC-CCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALASARHE-FGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~~~~~-~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
+++.|+++|+... ...++++..|++.++++..+.+.+.... +.++.+.|.|++..++..+++++.+++++|.+..
T Consensus 7 ~~~~t~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~ 82 (398)
T 2rfv_A 7 YGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAAR----FALEESGYIYTRLGNPTTDALEKKLAVLERGEAG 82 (398)
T ss_dssp SCHHHHHHHTTCCCCTTTCCSSCCCCCCSBCCCSSHHHHHHH----C-----CCSBTTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred CCCceeEeecCCcCccCCCCcCCCCcCCCccccCCHHHHHHh----hcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcE
Confidence 4678888886543 4567899999999999999988544433 3445667899999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
++++||++|+.+++++++++||+|+++.+.|+++...+...... .|.++.+++.+|+++|++++ ++++++|++++|+|
T Consensus 83 i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~n 160 (398)
T 2rfv_A 83 LATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAAKPEEIRAAM-RPETKVVYIETPAN 160 (398)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHH-TTCEEEEECTTSHHHHHHHC-CTTEEEEEEESSBT
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhc-CCCCeEEEEECCCC
Confidence 99999999999999999999999999999999998876433333 68999999999999999999 77899999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHHHhhh
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQG 275 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~~ 275 (447)
|+|.+.|+++|.++|++||+++|+|++|+. ....+..+++|+++.|+||+++++|.|+||++++++++++ .+.....
T Consensus 161 ptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~- 239 (398)
T 2rfv_A 161 PTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLK- 239 (398)
T ss_dssp TTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHH-
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHH-
Confidence 999999999999999999999999999953 3335666789999999999999999888899999988876 5554433
Q ss_pred hhhhc-CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 276 ALMLL-GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 276 ~~~~~-g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
.. +.+.++..++++...++.+..+++++.++++.+.+.|++++. .+.+|.+...|.++++....+ +.|+++
T Consensus 240 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g~~~ 313 (398)
T 2rfv_A 240 ---DITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS---LPGGII 313 (398)
T ss_dssp ---HTTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEE
T ss_pred ---hCCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCceEE
Confidence 23 445555555555555667777888888899999999998874 677888888898888876543 578899
Q ss_pred EEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 353 CLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 353 ~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
+|.+++. +....+++.+... | ++++.|+.++++.+|+..++..++++++..+|++++.||||+| .+++++++++
T Consensus 314 ~~~~~~~~~~~~~l~~~~~~~---~-i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~~~~~~i~~ 388 (398)
T 2rfv_A 314 SFEIAGGLEAGRRMINSVELC---L-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG-LEDPEDIIND 388 (398)
T ss_dssp EEEETTHHHHHHHHHTTCSSS---E-ECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHhCCcc---e-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec-CCCHHHHHHH
Confidence 9999853 4567777777653 3 7899999999999888888888899999999999999999999 9999999999
Q ss_pred HHHHHHHh
Q 013210 432 FEKALSRM 439 (447)
Q Consensus 432 l~~al~~~ 439 (447)
|.++|+++
T Consensus 389 l~~al~~~ 396 (398)
T 2rfv_A 389 LEHAIRKA 396 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999865
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=351.46 Aligned_cols=373 Identities=29% Similarity=0.412 Sum_probs=304.6
Q ss_pred chhhHhhhc-CCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
++.|+++|+ +.....+|++.+||+.++|+.+++. ++ ...|.|+|+.++...++++.+|++++.+..+
T Consensus 4 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i 71 (386)
T 1cs1_A 4 KQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGF-----------NE-PRAHDYSRRGNPTRDVVQRALAELEGGAGAV 71 (386)
T ss_dssp CHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBT-----------TB-CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcceeEEecCCCccccCCCCCCCccccceeecccc-----------CC-CCCcceeCCCCccHHHHHHHHHHHhCCCcEE
Confidence 567888885 4444568999999999999998652 11 2468899999999999999999999988877
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
++++|++|+.+++++++++||+|+++.++|+++...+...... .|.++.+++.+|+++|++++ ++++++|++++|+||
T Consensus 72 ~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~np 149 (386)
T 1cs1_A 72 LTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVESPSNP 149 (386)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTT-TSCEEEEECTTCHHHHHHHH-HTCCSEEEEECSCTT
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHhh-ccCCcEEEEeCCCCC
Confidence 7788899999999999999999999999999977766444344 79999999999999999999 678999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGA 276 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~ 276 (447)
+|.+.|+++|.++|+++|+++|+|++|+.+. ..+..+++|+++.|+||+++++|.++||+++.++ ++++.+.....
T Consensus 150 tG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~-- 227 (386)
T 1cs1_A 150 LLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN-- 227 (386)
T ss_dssp TCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH--
T ss_pred CCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHH--
Confidence 9999999999999999999999999995443 3445678999999999999999888779998875 78888876655
Q ss_pred hhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013210 277 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 354 (447)
Q Consensus 277 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 354 (447)
..+...++..++.+...++.+..+.++..++++.+.+.|++++. .+.+|.+...|.+.++....+ +.|++++|
T Consensus 228 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~ 302 (386)
T 1cs1_A 228 --NIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGAMLSF 302 (386)
T ss_dssp --HHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEE
T ss_pred --hcCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcC---CCceEEEE
Confidence 23344455555554455667777888888999999999988765 566788888888888876533 57899999
Q ss_pred EeCCHHHHHHHHHHhhccccccccccc---ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 355 DMETEEKANRLMNYLQNYAQFGFMAVS---LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 355 ~l~~~~~~~~l~~~l~~~~~~g~~~vs---~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
.+++. .+.+...|.. .| +.++ +|+..+++++|+...+...+++++..+|++++.||||+| .+++++++++
T Consensus 303 ~~~~~--~~~~~~~l~~---~g-i~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~~~~~i~~ 375 (386)
T 1cs1_A 303 ELDGD--EQTLRRFLGG---LS-LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIAD 375 (386)
T ss_dssp EESSC--HHHHHHHHHT---CS-SSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHH
T ss_pred EECCC--HHHHHHHHHh---CC-cceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEc-cCCHHHHHHH
Confidence 99743 2334444443 23 3343 788999999888888888899999999998999999999 9999999999
Q ss_pred HHHHHHHhh
Q 013210 432 FEKALSRMQ 440 (447)
Q Consensus 432 l~~al~~~~ 440 (447)
|.++|+++.
T Consensus 376 l~~al~~~~ 384 (386)
T 1cs1_A 376 LENGFRAAN 384 (386)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999998874
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=353.24 Aligned_cols=373 Identities=29% Similarity=0.460 Sum_probs=305.5
Q ss_pred CchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
+.+.+.+++-....+..+++++||+.++++.+++... ...|.|++.+++..+.+++.+++++|.+.++
T Consensus 85 ~~~~~~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~------------~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i 152 (464)
T 1ibj_A 85 ASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIE------------NGPYDYTRSGNPTRDALESLLAKLDKADRAF 152 (464)
T ss_dssp CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSC------------CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CCcCCeEEECCCCCCCCCCCCccHHhhhhhhhhcccc------------cCCccccCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 4567778874332235688999999999987654310 2357788999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||++|+.+++. ++++||+|+++.+.|+++...+...... .|.++++++.+|+++|++++ ++++++|++++|+||
T Consensus 153 ~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~tk~v~l~~p~Np 229 (464)
T 1ibj_A 153 CFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTKLDEVAAAI-GPQTKLVWLESPTNP 229 (464)
T ss_dssp EESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGG-GTCEEEEECTTSHHHHHHHC-CSSEEEEEECSSCTT
T ss_pred EECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCceEEEEeCCCCC
Confidence 99999999998885 7889999999999999998776444444 79999999999999999999 788999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCC-CCeeEEEEEcC-hHHHHHHHHHhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGG-ADIIAGAVCGP-ANLVNSMMDLHQG 275 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~-g~~igG~l~~~-~~~~~~l~~~~~~ 275 (447)
+|.+.|+++|+++|++||+++|+|++| .+....+..+++|+++.|+||+++++ |.++ |+++++ +++++.+...+.
T Consensus 230 tG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~-G~l~~~~~~l~~~l~~~~~- 307 (464)
T 1ibj_A 230 RQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGEKLAKEVYFLQN- 307 (464)
T ss_dssp TCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCC-EEEEECSHHHHHHHHHHHH-
T ss_pred CCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcE-EEEEEChHHHHHHHHHHHH-
Confidence 999999999999999999999999999 34444566689999999999999866 5565 899887 478888876654
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|..+++..++++...++.+..++++...+...+.+.|++++. ++.++++..+|.+.++....+ |+|++++
T Consensus 308 ---~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---g~g~~~~ 381 (464)
T 1ibj_A 308 ---SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK---GAGSVFS 381 (464)
T ss_dssp ---HTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCS---CCCSEEE
T ss_pred ---hcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCC---CCceEEE
Confidence 34555566666666666777777888888888888999988763 788899988888877765432 5789999
Q ss_pred EEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 354 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
|.+++.+....|++.|... | ++++.|+.++++++|+..++...+++++..+|+++++||||+| .+++++++++|.
T Consensus 382 ~~l~~~~~~~~~~~~L~~~---g-i~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~edi~~li~~L~ 456 (464)
T 1ibj_A 382 FITGSVALSKHLVETTKYF---S-IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLISDLD 456 (464)
T ss_dssp EECSCHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECC-SSCHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhcCcc---e-EeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCHHHHHHHHH
Confidence 9997654456788888763 3 7999999999999998777777777777778888899999999 899999999999
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
++|+++
T Consensus 457 ~al~~~ 462 (464)
T 1ibj_A 457 IAFKTF 462 (464)
T ss_dssp HHHHSC
T ss_pred HHHhhc
Confidence 998754
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=307.10 Aligned_cols=323 Identities=33% Similarity=0.539 Sum_probs=262.0
Q ss_pred HHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhh
Q 013210 103 NLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAI 182 (447)
Q Consensus 103 ~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i 182 (447)
++++++|+++|++..++++||++|+.+++.+++++||+|+++.++|+++...+...... .|.++.+++..|++++++++
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i 80 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-FGVEVDFIDMAVPGNIEKHL 80 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHTC
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHhh
Confidence 68999999999988888999999999999999999999999999999987776432333 68899999988999999999
Q ss_pred ccCCceEEEEEcCCCCCccccCHHHHHHHHHh-cCCEEEEeCCCCCC-CCCccCCCCeEEEeCCCccccCCCCeeEEEEE
Q 013210 183 VQGRTKVLYFESISNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVC 260 (447)
Q Consensus 183 ~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~-~gi~livD~~~~~~-~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~ 260 (447)
++++++|++++|+||+|.+.|+++|.++|++ +|+++|+|++|+.. ...+.+.++|+++.|+||+++++|.|++|+++
T Consensus 81 -~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~ 159 (331)
T 1pff_A 81 -KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVC 159 (331)
T ss_dssp -CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEE
T ss_pred -cCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEE
Confidence 7889999999999999999999999999999 99999999999432 22344678999999999999999988559999
Q ss_pred cCh-HHHHHHHHHhhhhhhh-cCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhH
Q 013210 261 GPA-NLVNSMMDLHQGALML-LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHE 336 (447)
Q Consensus 261 ~~~-~~~~~l~~~~~~~~~~-~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~ 336 (447)
.++ ++++.+..... . .+...++..++.+...++.+..+.++..++.+.+.+.|++.+. .+.++.+...|.+.
T Consensus 160 ~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~ 235 (331)
T 1pff_A 160 SRADIIAKVKSQGIK----DITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHE 235 (331)
T ss_dssp ECHHHHHHHHHTCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHH
T ss_pred eCcHHHHHHHHHHHH----hhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHH
Confidence 998 88888776544 2 3444555555544445556666777788888889999987743 66788888888888
Q ss_pred HHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEE
Q 013210 337 LLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 416 (447)
Q Consensus 337 l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iR 416 (447)
++....+ +.|++++|.+++.+....+++...+ -+.++|+|+.+|++.+++...+...+++++..+|++++.||
T Consensus 236 ~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~gI----~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR 308 (331)
T 1pff_A 236 IAKKQMK---MFGSMIAFDVDGLEKAKKVLDNCHV----VSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIR 308 (331)
T ss_dssp HHHHHCS---SCCSEEEEECSSHHHHHHHHHTCSS----SEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEE
T ss_pred HHHhhCC---CCceEEEEEECCHHHHHHHHHhCCC----ceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEE
Confidence 7766543 5788999999854444444433322 11267899999999888888888889999999999899999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHh
Q 013210 417 MSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 417 iS~g~~~~~~~~i~~l~~al~~~ 439 (447)
||+| .++++++++++.++|+++
T Consensus 309 is~~-~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 309 LSVG-CENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EECC-SSCHHHHHHHHHHHHHTC
T ss_pred EEEe-cCCHHHHHHHHHHHHHHh
Confidence 9999 999999999999999753
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=272.27 Aligned_cols=327 Identities=20% Similarity=0.235 Sum_probs=249.4
Q ss_pred CCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE---eCChHHHHHHHHHHhcCCCCeEEEeC-CCchhHHHHHH-----
Q 013210 86 PDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT----- 156 (447)
Q Consensus 86 ~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~---tsggt~A~~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~----- 156 (447)
++++.|.|++. ..+.+++.+|+++|++.+++ |+||++|+.+++.+++++||+|+++. +.|+++...+.
T Consensus 49 ~~~~~~~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~ 125 (409)
T 3jzl_A 49 HPSTGYGYDDE---GRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQG 125 (409)
T ss_dssp CCCCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSS
T ss_pred CCCcCCCCChh---HHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccch
Confidence 44677888875 47889999999999998877 89999999999999999999999998 99999876652
Q ss_pred -hhcCcccCeeEEEeCC-----CCHHHHHHhhccCCceEEEEEc----CCCCCccccCHHHHHHHHHh--cCCEEEEeCC
Q 013210 157 -HFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGVTVVVDNT 224 (447)
Q Consensus 157 -~~~~~~~g~~~~~v~~-----~d~~~l~~~i~~~~t~lV~i~~----~~NptG~v~~l~~I~~la~~--~gi~livD~~ 224 (447)
..+.. .|+++++++. .|+++|++++ +++|++|++++ |+||+|.+.|+++|+++|++ +|+++|+|++
T Consensus 126 ~~~l~~-~G~~~~~v~~~~~g~~d~e~l~~ai-~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a 203 (409)
T 3jzl_A 126 QGSLKD-FHIGYSSVPLLENGDVDFPRIAKKM-TPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNC 203 (409)
T ss_dssp SSCTGG-GTCEEEECCCCTTSCCCHHHHHHHC-CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred hhHHHH-cCCEEEEeCCCCCCCcCHHHHHHhc-cCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCC
Confidence 23334 6899999988 4999999999 78899999999 99999999999999999999 9999999999
Q ss_pred CCCCC--CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHH
Q 013210 225 FSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG 300 (447)
Q Consensus 225 ~~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~ 300 (447)
|+.+. ..+...++|++++|+||++|++|.++||++++++++++.+..... +.....+..+.+ +++++++++.+.
T Consensus 204 ~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~--~~~~l~gl~~~~ 281 (409)
T 3jzl_A 204 YGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYS--LLEMYQGFFLAP 281 (409)
T ss_dssp TCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTC--HHHHHHHHHHHH
T ss_pred cccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHH--HHHHHHHHhhHH
Confidence 95543 467778999999999999999887778999999999998876432 121234444432 233556667788
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc-
Q 013210 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA- 379 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~- 379 (447)
.+++++.+++.++++.|+++|.++ +|+ +++|. ...+++|.+++.+.+.+|++.|+.....+...
T Consensus 282 ~r~~~~~~~a~~la~~L~~~g~~v-~p~-~~~~~-------------~~~i~~i~l~~~~~~~~~~~~L~~~~~~~s~~~ 346 (409)
T 3jzl_A 282 HVTAQAIKGARFTAAMLAEFGVEA-DPV-WDAPR-------------TDLIQSVSFHNKEKMVAFAQAIQAASPVNAHVL 346 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCC-------------SSSCCEEECSCHHHHHHHHHHHHHTSSSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcc-cCC-CCCCC-------------ccEEEEEEeCCHHHHHHHHHHHHhcCcccccCC
Confidence 899999999999999999999988 776 55553 33489999998888999999998632111111
Q ss_pred ----ccccCcccccccccc---ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 380 ----VSLGYYETLMSCSGS---STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 380 ----vs~G~~~s~~~~~a~---~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...|+.+.++...+. .+..+++ +.-.+.+.++...-| -.+-+...-.+..+++++
T Consensus 347 p~~~~~~gy~~~~~~~~~~f~~~~~~e~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 408 (409)
T 3jzl_A 347 PIGAYMPGYEDDVIMAAGTFIQGASLELT----ADGPIREPYQLYVQG-GLTYEHIKIAVTRAIQKI 408 (409)
T ss_dssp CCCBCCTTCSSCEEEECCCSSTTCSSSCE----EEEESSTTTEEEEEC-CSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCceeEeccccCCCcceeec----CCCCCCCCeEEEEcC-CccHHHHHHHHHHHHHhh
Confidence 112333333332221 1111111 112334567889888 788777777787877764
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=272.01 Aligned_cols=329 Identities=19% Similarity=0.214 Sum_probs=250.2
Q ss_pred CCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE---eCChHHHHHHHHHHhcCCCCeEEEeC-CCchhHHHHH-----
Q 013210 85 GPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALL----- 155 (447)
Q Consensus 85 ~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~---tsggt~A~~~al~~l~~~gd~Vi~~~-~~y~~~~~~~----- 155 (447)
.++++.|.|+|. ..+.+++.+|+++|++..++ ++||++|+..++.+++++||+|+++. +.|+++...+
T Consensus 62 ~~~~~gy~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~ 138 (427)
T 3i16_A 62 FTNSSGYGYGDI---GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITEN 138 (427)
T ss_dssp SCCCCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCC
T ss_pred cCCCCCCCCCHH---HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhcccc
Confidence 344678888875 37889999999999998777 89999999999999999999999999 9999888665
Q ss_pred --HhhcCcccCeeEEEeCC-----CCHHHHHHhhcc-CCceEEEEEc----CCCCCccccCHHHHHHHHHh--cCCEEEE
Q 013210 156 --THFFPRACNITTTFVDI-----SDHEMVNSAIVQ-GRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGVTVVV 221 (447)
Q Consensus 156 --~~~~~~~~g~~~~~v~~-----~d~~~l~~~i~~-~~t~lV~i~~----~~NptG~v~~l~~I~~la~~--~gi~liv 221 (447)
...+.. .|+++++++. .|+++|++++++ ++|++|++++ |+||+|.+.|+++|+++|++ +|+++|+
T Consensus 139 ~~~~~l~~-~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~liv 217 (427)
T 3i16_A 139 SNMGSLKE-FGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFV 217 (427)
T ss_dssp CSSCCTGG-GTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred chHHHHHH-cCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEE
Confidence 123333 6999999987 499999999932 7899999999 99999999999999999999 9999999
Q ss_pred eCCCCCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccH-H-HHHHHHccCC
Q 013210 222 DNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP-K-VAFELSERIP 297 (447)
Q Consensus 222 D~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~-~-~a~~~~~~~~ 297 (447)
|++|+.+ ...+...++|++++|+||++|++|...||++++++++++.++...... ..|..+.+ . .+++++++++
T Consensus 218 D~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~--~~g~~~~~~~~~a~~~l~gl~ 295 (427)
T 3i16_A 218 DNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVP--GIGGECGSTFGVVRSMYQGLF 295 (427)
T ss_dssp ECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCT--TTGGGCCCCTTCHHHHHHHHH
T ss_pred ECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccC--ccCccCCccHHHHHHHHHHHH
Confidence 9999544 356777899999999999999988666799999999999887643211 12222222 2 2566777788
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGF 377 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~ 377 (447)
.+..+++++.+++.+++++|++++.++ +|+ +++|+| .-+++|.+++.+.+.+|++.|+.....+.
T Consensus 296 ~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~~-------------~~i~~i~l~~~~~~~~f~~~l~~~~~~~s 360 (427)
T 3i16_A 296 LAPHISMEALKGAILCSRIMELAGFEV-MPK-YDEKRS-------------DIIQSIKFNDKDKLIEFCKGIQTGSPIDS 360 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCCS-------------SSCEEEECSSHHHHHHHHHHHHHTCSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCCc-------------cEEEEEEECCHHHHHHHHHHHhhcCcccc
Confidence 888999999999999999999999988 787 666643 33899999988889999999986321111
Q ss_pred c-----cccccCcccccccccc---ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 378 M-----AVSLGYYETLMSCSGS---STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 378 ~-----~vs~G~~~s~~~~~a~---~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
. ....|+.+.++...+. .+..+++ ..-.+.+.++...-| -.+-+...-.+..++.++
T Consensus 361 ~~~p~~~~~~gy~~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 425 (427)
T 3i16_A 361 FVSCEPWDMPGYTDQVIMAAGAFIQGSSIELS----ADAPIREPYIAYLQG-GLTFDHAKIGILIALSRI 425 (427)
T ss_dssp TSCCCCBCC---CCCEEEEECCSSTTCSSSSE----EEEESCTTCEEEEEC-CSSHHHHHHHHHHHHHTT
T ss_pred cccCcCCCCCCCCCceeeccCcCCCCcccccc----CCCCCCCCeEEEEcC-CccHHHHHHHHHHHHHHH
Confidence 1 1123444444433222 1111111 112334567888888 777777777788887765
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-32 Score=269.78 Aligned_cols=329 Identities=21% Similarity=0.236 Sum_probs=246.3
Q ss_pred CCCccccCCCCchHHHHHHHHHHHhCCCeEEE---eCChHHHHHHHHHHhcCCCCeEEEeC-CCchhHHHHHH-------
Q 013210 88 RDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------- 156 (447)
Q Consensus 88 ~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~---tsggt~A~~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~------- 156 (447)
..+|.|+|. .++.+|+.+|+++|++.+++ ++||++|+..++.+++++||+|++++ +.|+++...+.
T Consensus 66 ~~gy~Y~~~---g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 142 (427)
T 3hvy_A 66 SSGYGYNDI---GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKV 142 (427)
T ss_dssp CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCS
T ss_pred CcCCCCCch---hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhh
Confidence 567888875 47899999999999999888 89999999999999999999999998 99998875551
Q ss_pred hhcCcccCeeEEEeCC----CCHHHHHHhhcc-CCceEEEEEc----CCCCCccccCHHHHHHHHHh--cCCEEEEeCCC
Q 013210 157 HFFPRACNITTTFVDI----SDHEMVNSAIVQ-GRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGVTVVVDNTF 225 (447)
Q Consensus 157 ~~~~~~~g~~~~~v~~----~d~~~l~~~i~~-~~t~lV~i~~----~~NptG~v~~l~~I~~la~~--~gi~livD~~~ 225 (447)
..+.. .|+++++++. .|+++|++++++ ++|++|++++ |+||+|.+.|+++|+++|++ +|+++++|++|
T Consensus 143 ~~l~~-~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~ 221 (427)
T 3hvy_A 143 GSLRE-YGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCY 221 (427)
T ss_dssp CCTGG-GTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred hHHHH-cCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence 23333 6999999988 699999999932 7899999999 99999999999999999999 89999999999
Q ss_pred CCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHH
Q 013210 226 SPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGL 301 (447)
Q Consensus 226 ~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~ 301 (447)
+.+ ...+...++|++++|+||++|++|.+.||++++++++++.++.... +.....+.++ ..+++++++++.+..
T Consensus 222 ~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~--~~a~~~~~gl~~~~~ 299 (427)
T 3hvy_A 222 GEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTF--GVMRSLYEGLFMAPH 299 (427)
T ss_dssp CTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCT--TCHHHHHHHHHHHHH
T ss_pred cccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCH--HHHHHHHHhHhHHHH
Confidence 544 3577778999999999999999887778999999999999887432 1111222222 235666667778888
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc--
Q 013210 302 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA-- 379 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~-- 379 (447)
+++++.+++.++++.|+++|.++ +|+ +++|. ...+++|.+++.+.+.+|++.|+.....+...
T Consensus 300 r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~-------------~~li~~~~l~~~~~~~~f~~~l~~~~~~~s~~~p 364 (427)
T 3hvy_A 300 VTIEAVKGAVFCARIMELAGFDV-LPK-YNDKR-------------TDIIQAIKFNDEKKLIDFIKGIQTASPVDSFVQC 364 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCC-------------SSSEEEEECSSHHHHHHHHHHHHHTCSSSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCC-------------ceEEEEEeCCCHHHHHHHHHHhccccccccccCC
Confidence 99999999999999999999988 777 66553 33499999998888999999998632111111
Q ss_pred --ccccCccc-cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 380 --VSLGYYET-LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 380 --vs~G~~~s-~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
....|+.+ ++...+. .-..-+.|--+.-.+.+.++...-| -.+-+...-.+..+++++
T Consensus 365 ~~~~~~Gy~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 425 (427)
T 3hvy_A 365 EAWDMPGYEDKVIMAAGT-FVQGASIELSADAPIREPYIGYLQG-GLTFDHAKLGVLIALSKL 425 (427)
T ss_dssp ----------CEEEECCC-SSTTCSSSSEEEEESCTTCEEEEEC-CSSHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCceeeeccc-cCCCccccccCCCCCCCCeeEEEcC-CccHHHHHHHHHHHHHHh
Confidence 12233333 3332222 1011111111122344678899999 888787777888887765
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=269.28 Aligned_cols=336 Identities=13% Similarity=0.133 Sum_probs=233.6
Q ss_pred ccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CC
Q 013210 65 SATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC----SS 137 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~----~~ 137 (447)
+++++.+.+ +.+.+.+...++||.+.|.+++...+..+++++.+++++|++ .+++|+||++|+.+++++++ ++
T Consensus 8 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~ 87 (382)
T 4hvk_A 8 SAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARK 87 (382)
T ss_dssp TCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGG
T ss_pred CcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCC
Confidence 344444555 777777777788888888888878888899999999999975 49999999999999999887 89
Q ss_pred CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHH
Q 013210 138 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212 (447)
Q Consensus 138 gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la 212 (447)
||+|+++.++|+++...+... .+ .|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.|+++|.++|
T Consensus 88 gd~vi~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 164 (382)
T 4hvk_A 88 GKHILVSAVEHMSVINPAKFL-QK-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHANNEIGTIQPVEEISEVL 164 (382)
T ss_dssp CCEEEEETTCCHHHHHHHHHH-HH-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH-Hh-cCCEEEEeccCCCCCcCHHHHHHHh-ccCceEEEEECCCCCceeeCCHHHHHHHH
Confidence 999999999999998876433 23 58899988875 899999999 78899999999999999999999999999
Q ss_pred HhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh---hhhhcCCCccH-
Q 013210 213 HDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG---ALMLLGPTMNP- 286 (447)
Q Consensus 213 ~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~---~~~~~g~~~~~- 286 (447)
++||+ +|+|++|+ ....+....++|+++.|+||++|++| + |+++.+++. .+.....+ .......+...
T Consensus 165 ~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g--~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 238 (382)
T 4hvk_A 165 AGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEA--KLQPVILGGGQENGLRSGSENVP 238 (382)
T ss_dssp SSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTT--C-EEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHH
T ss_pred HHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCc--e-EEEEEcCcc--CcCcccccCCCcCccccCCcCHH
Confidence 99999 99999983 23344444579999999999988776 4 666654433 11111100 00011222222
Q ss_pred -HHHH-HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHH
Q 013210 287 -KVAF-ELSER-IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 362 (447)
Q Consensus 287 -~~a~-~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~ 362 (447)
..+. .++.. .+.+....+++.++++++.+.|++++. ++..+... +.+++++|.+++.+ .
T Consensus 239 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-~ 301 (382)
T 4hvk_A 239 SIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEK----------------RLPNNVNVRFSYIE-G 301 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSS----------------BCTTEEEEEETTCC-H
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccc----------------cCCCEEEEEECCCC-H
Confidence 2221 12211 123456677788999999999987744 55433211 23458889887432 4
Q ss_pred HHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 363 ~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
..+.+.|... | +.++.|..++ .....+++....+|.+ ++.||||++ ..++++.++.+.++|++
T Consensus 302 ~~~~~~l~~~---g-i~v~~g~~~~--------~~~~~~~~~~~~~g~~~~~~~~~iRl~~~-~~~t~e~i~~~~~~l~~ 368 (382)
T 4hvk_A 302 ESIVLSLDMA---G-IQASTGSACS--------SKTLQPSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLPG 368 (382)
T ss_dssp HHHHHHHHHT---T-CBCBCC----------------CCCHHHHHTTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC---C-EEEeeCCccC--------CCCCcchHHHHHcCCChhhcCCeEEEEcC-CCCCHHHHHHHHHHHHH
Confidence 5677777653 3 5777774332 2222333455556665 589999999 76666666666655554
Q ss_pred h
Q 013210 439 M 439 (447)
Q Consensus 439 ~ 439 (447)
+
T Consensus 369 ~ 369 (382)
T 4hvk_A 369 V 369 (382)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=265.55 Aligned_cols=336 Identities=15% Similarity=0.143 Sum_probs=228.4
Q ss_pred cccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCe
Q 013210 68 FTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC----SSGGH 140 (447)
Q Consensus 68 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~----~~gd~ 140 (447)
+..+.+ +++.+.+...+++|.+.+.++........++++.+++++|.+ .+++|+||++|+.++++++. ++||+
T Consensus 12 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~ 91 (384)
T 1eg5_A 12 RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRT 91 (384)
T ss_dssp CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCE
T ss_pred CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCE
Confidence 333444 677777766677776666666555667789999999999975 69999999999999999987 78999
Q ss_pred EEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc
Q 013210 141 VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 215 (447)
Q Consensus 141 Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~ 215 (447)
|+++.++|+++...+.. +.. .|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.|+++|.++|+++
T Consensus 92 vl~~~~~~~~~~~~~~~-~~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~ 168 (384)
T 1eg5_A 92 IITTPIEHKAVLETMKY-LSM-KGFKVKYVPVDSRGVVKLEELEKLV-DEDTFLVSIMAANNEVGTIQPVEDVTRIVKKK 168 (384)
T ss_dssp EEECTTSCHHHHHHHHH-HHH-TTCEEEECCBCTTSCBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHH
T ss_pred EEECCCCchHHHHHHHH-HHh-cCCEEEEEccCCCCccCHHHHHHHh-CCCCeEEEEECCCCCcccccCHHHHHHHHHhc
Confidence 99999999988776632 222 58888888763 899999999 67899999999999999999999999999999
Q ss_pred C--CEEEEeCCCC--CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHH--HHHHHHHhhhhhhhcCC--CccHH
Q 013210 216 G--VTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--VNSMMDLHQGALMLLGP--TMNPK 287 (447)
Q Consensus 216 g--i~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~--~~~l~~~~~~~~~~~g~--~~~~~ 287 (447)
| +++|+|++|+ ....+...+++|+++.|+||++|++| + |+++.++++ ...+...........++ .+.+.
T Consensus 169 ~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (384)
T 1eg5_A 169 NKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKG--V-GITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIV 245 (384)
T ss_dssp CTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTT--C-EEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHH
T ss_pred CCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCc--e-EEEEEcCCCccccccccCcccccccCCCCChHHHH
Confidence 9 9999999984 22333344578999999999999877 5 899888765 21111100000001121 12222
Q ss_pred HHHHHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHH
Q 013210 288 VAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLM 366 (447)
Q Consensus 288 ~a~~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~ 366 (447)
++..++.. .+.+....+++.++++++.+.|++.+.++..|... +.+.+++|.+++. +...+.
T Consensus 246 a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----------------~~~~~~~~~~~~~-~~~~~~ 308 (384)
T 1eg5_A 246 GAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI----------------SLPNTLSVSFPNI-RGSTLQ 308 (384)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS----------------BCTTEEEEECTTC-CHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCccc----------------CCCCEEEEEeCCC-CHHHHH
Confidence 22233332 13456677788999999999998865565543200 1345888888742 245677
Q ss_pred HHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 367 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 367 ~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.|.. .| +.+..|..+. .....+.+.+..+|.+ .+.+|||++ ...+++.++.+.++|+++
T Consensus 309 ~~l~~---~g-i~v~~g~~~~--------~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 372 (384)
T 1eg5_A 309 NLLSG---YG-IYVSTSSACT--------SKDERLRHVLDAMGVDRRIAQGAIRISLC-KYNTEEEVDYFLKKIEEI 372 (384)
T ss_dssp HHHHH---TT-EECBC--------------------CHHHHTTCCHHHHHHEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHhh---CC-eEEecccccc--------CCCCcchHHHHHcCCChhhcCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 77764 33 5666553221 1111122344455654 478999999 766666666666655544
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=268.85 Aligned_cols=328 Identities=17% Similarity=0.177 Sum_probs=231.0
Q ss_pred HHHHHhhc--CCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcC----CCCeEEEe
Q 013210 74 ETMRRMFA--GELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCS----SGGHVVAA 144 (447)
Q Consensus 74 ~~~~~~~~--~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~----~gd~Vi~~ 144 (447)
+++.+.+. ..+++|.+ .+.+++...+..+++++.+++++|.+ .+++|+||++|+.++++++.. +||+|+++
T Consensus 40 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~ 119 (423)
T 3lvm_A 40 EKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITS 119 (423)
T ss_dssp HHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEEC
Confidence 55555566 56777776 67777777788899999999999986 799999999999999998874 79999999
Q ss_pred CCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEE
Q 013210 145 RTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTV 219 (447)
Q Consensus 145 ~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~l 219 (447)
.++|+++...+... .. .|.++.+++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|++||+++
T Consensus 120 ~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~l 196 (423)
T 3lvm_A 120 KTEHKAVLDTCRQL-ER-EGFEVTYLAPQRNGIIDLKELEAAM-RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIY 196 (423)
T ss_dssp TTSCHHHHHHHHHH-HH-TTCEEEEECCCTTSCCCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEE
T ss_pred CccchHHHHHHHHH-HH-cCCEEEEeccCCCCccCHHHHHHhc-CCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEE
Confidence 99999988777433 23 58899988876 899999999 778999999999999999999999999999999999
Q ss_pred EEeCCCCC--CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh----hhhcCCC-ccHHHHH-H
Q 013210 220 VVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----LMLLGPT-MNPKVAF-E 291 (447)
Q Consensus 220 ivD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----~~~~g~~-~~~~~a~-~ 291 (447)
|+|++|+. ...+....++|+++.|+||.+|++| + |+++.+++..+.+.....+. ....++. .....+. .
T Consensus 197 i~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 273 (423)
T 3lvm_A 197 HVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG--I-GALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGE 273 (423)
T ss_dssp EEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSS--C-EEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHH
T ss_pred EEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCC--e-EEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHH
Confidence 99999932 3345556689999999999988776 5 88888776554443321100 0111221 1122222 2
Q ss_pred HHccC-CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013210 292 LSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 369 (447)
Q Consensus 292 ~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l 369 (447)
++..+ ..+....+++.++++++.+.|++++ .++..+... +.+++++|.+++.. ...+.+.|
T Consensus 274 al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-~~~l~~~l 336 (423)
T 3lvm_A 274 AYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH----------------GAPNILNVSFNYVE-GESLIMAL 336 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT----------------BCTTEEEEEETTSC-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc----------------cCCCeEEEEeCCCC-HHHHHHHH
Confidence 22221 2245666778899999999998874 455543211 23458888886432 45666666
Q ss_pred hcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 370 QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 370 ~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.. +.++.|..+ ......+......+|++ .+.||||++ ...+++.++.+.++|+++
T Consensus 337 ~~------i~v~~g~~~--------~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~ 395 (423)
T 3lvm_A 337 KD------LAVSSGSAC--------TSASLEPSYVLRALGLNDELAHSSIRFSLG-RFTTEEEIDYTIELVRKS 395 (423)
T ss_dssp TT------EECBCCCC-------------CCCCHHHHHHTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred hh------heeccCccc--------cCCCccccHHHHHhCCCccccCceEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 64 466666332 22222333455556665 489999999 766666666655555443
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=265.60 Aligned_cols=322 Identities=15% Similarity=0.122 Sum_probs=230.3
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh---cCCCCeEEEeCCCc
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQL---CSSGGHVVAARTLY 148 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l---~~~gd~Vi~~~~~y 148 (447)
+.+.+.+...++||++.|.|++...+...++++.+|+++|.+ .++||+||++++.++++++ +++||+|+++.++|
T Consensus 44 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~ 123 (406)
T 3cai_A 44 TTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDD 123 (406)
T ss_dssp HHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSC
T ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCcc
Confidence 666666666566776667777666778899999999999985 5999999999999999887 78899999999999
Q ss_pred hhHHHHHHhhcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEe
Q 013210 149 GGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD 222 (447)
+++...+.....+ .|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.|+++|.++|+++|+++|+|
T Consensus 124 ~~~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D 201 (406)
T 3cai_A 124 EANIAPWLRAAHR-YGAKVKWAEVDIETGELPTWQWESLI-SKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVD 201 (406)
T ss_dssp GGGTHHHHHHHHH-HBCEEEEECCCTTTCCCCGGGHHHHC-CTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHh-cCCeEEEEecCcccCCcCHHHHHHHh-CCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEE
Confidence 9987666433222 58888888875 889999999 778999999999999999999999999999999999999
Q ss_pred CCCC--CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh------hhhhcCCCcc-HHHH-HHH
Q 013210 223 NTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG------ALMLLGPTMN-PKVA-FEL 292 (447)
Q Consensus 223 ~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~------~~~~~g~~~~-~~~a-~~~ 292 (447)
++|+ ....+...+++|+++.|+||++| ++ +||+++.++++++.+...... .....++... ...+ ..+
T Consensus 202 ~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-~~--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~a 278 (406)
T 3cai_A 202 HSAAAPYRLLDIRETDADVVTVNAHAWGG-PP--IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVAS 278 (406)
T ss_dssp CTTTTTTCCCCHHHHCCSEEEEEGGGGTS-CS--CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHH
T ss_pred cccccCCCCCCchhcCCCEEEeehhhhcC-CC--cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHH
Confidence 9993 22344444589999999999987 44 533999999887766433210 0001222211 1111 112
Q ss_pred HccCC----------------cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 293 SERIP----------------HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 293 ~~~~~----------------~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
+..+. .+....++..++++++.+.|++.+ .++..|. . ..+++++|.
T Consensus 279 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~---------------~~~~~~~~~ 341 (406)
T 3cai_A 279 IEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRP--E---------------AQIPVVSFA 341 (406)
T ss_dssp HHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCC--S---------------SBCSEEEEE
T ss_pred HHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCc--c---------------ccCCEEEEE
Confidence 22111 245566778899999999998874 3544332 0 234589999
Q ss_pred eCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC--CCeEEEEeCCCCCHHHHHHHHH
Q 013210 356 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS--AGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 356 l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~--~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
+++. ....+.+.|... | +.++.|.. +.....+|.+ .+.+|||++ ..++++.++.+.
T Consensus 342 ~~~~-~~~~~~~~L~~~---g-i~v~~g~~----------------~~~~~~~g~~~~~~~iRis~~-~~~t~e~i~~~~ 399 (406)
T 3cai_A 342 VHKV-PADRVVQRLADN---G-ILAIANTG----------------SRVLDVLGVNDVGGAVTVGLA-HYSTMAEVDQLV 399 (406)
T ss_dssp ETTB-CHHHHHHHHHHT---T-EECEECCS----------------CHHHHHHTTTTTTCCEEEECC-TTCCHHHHHHHH
T ss_pred ECCc-CHHHHHHHHHHC---C-cEEecCCh----------------HHHHHHcCCCCCCCeEEEEee-cCCCHHHHHHHH
Confidence 8742 245677777642 3 45565531 1112233443 478999999 888888899988
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
++|+++
T Consensus 400 ~~l~~~ 405 (406)
T 3cai_A 400 RALASL 405 (406)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 888754
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-30 Score=254.74 Aligned_cols=281 Identities=15% Similarity=0.206 Sum_probs=212.2
Q ss_pred CCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 97 FNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
..+...++++.+|+++|. +.+++|+||++|+++++++++++||+|+++.|.|+++...+. ..|.++.+++.+
T Consensus 49 ~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~ 123 (354)
T 3ly1_A 49 AKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAK-----IAGMKVTKVKMLD 123 (354)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECCCT
T ss_pred CCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHH-----HcCCEEEEecCCC
Confidence 456678999999999995 569999999999999999999999999999999999887763 268899998877
Q ss_pred ----CHHHHHHhhcc-CCceEEEEEcCCCCCccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc---------cCC-C
Q 013210 174 ----DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP---------ARL-G 236 (447)
Q Consensus 174 ----d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~---------~~~-g 236 (447)
|+++|++++++ +++++|++++|+||||.+.|++++.++++. +|+++|+|++|+.+.+.. ... +
T Consensus 124 ~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 203 (354)
T 3ly1_A 124 NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAE 203 (354)
T ss_dssp TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCS
T ss_pred CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCC
Confidence 99999999932 789999999999999999999888888887 999999999996554321 122 6
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
.++++.|+||++|++|.|+ ||++.++++++.+...... ...+.+.+.++..++...+.+..+.+++.++++++.+.
T Consensus 204 ~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 279 (354)
T 3ly1_A 204 NIILLKTFSKIHAMAGMRV-GYAVAHPTVIALMGRYVAG---EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKA 279 (354)
T ss_dssp SEEEEEESSSTTCCGGGCC-EEEECCHHHHHHHGGGTTC---SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeChhhccChhhhh-eeeecCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999899998 9999999998888766552 22222333333333433344666777889999999999
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccccc
Q 013210 317 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 396 (447)
Q Consensus 317 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~ 396 (447)
|++++..+. | +.|.++++.++. ....+.+.|... | +.++ |...
T Consensus 280 l~~~~~~~~-~-------------------~~~~~~~~~~~~--~~~~~~~~l~~~---g-i~v~-g~~~---------- 322 (354)
T 3ly1_A 280 LEDLKLPYL-P-------------------SEGNFVFHQLVV--PLKDYQTHMADA---G-VLIG-RAFP---------- 322 (354)
T ss_dssp HHHHTCCBC-C-------------------CCSSEEEEECSS--CHHHHHHHHHHT---T-EECC-CCCT----------
T ss_pred HHHCCCeEC-C-------------------CCceEEEEECCC--CHHHHHHHHHHC---C-EEEe-ecCC----------
Confidence 988765443 2 135688999875 245677777653 3 4555 5221
Q ss_pred CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 397 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 397 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+ .++.+|||++ . ++.++.+.++|+++.
T Consensus 323 ------------~-~~~~iRis~~-~---~~~i~~~~~~l~~~l 349 (354)
T 3ly1_A 323 ------------P-ADNWCRISLG-T---PQEMQWVADTMREFR 349 (354)
T ss_dssp ------------T-CTTEEEEECC-C---HHHHHHHHHHHHHHH
T ss_pred ------------C-CCCEEEEEcC-C---HHHHHHHHHHHHHHH
Confidence 1 2578999999 3 344555555555543
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.6e-30 Score=254.12 Aligned_cols=296 Identities=15% Similarity=0.139 Sum_probs=218.9
Q ss_pred cccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 92 ~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.+.....+..+++++.+++++|.+.+++|+||++|+.+++++++++||.|+++.|.|+++...+. ..|.++..++
T Consensus 81 ~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~-----~~g~~~~~v~ 155 (398)
T 3a2b_A 81 RFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSR-----LSFSKVIKYG 155 (398)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHH-----HSSSEEEEEC
T ss_pred CcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHH-----HcCCceEEeC
Confidence 33334457789999999999999999999999999999999999999999999999999987763 2688999999
Q ss_pred CCCHHHHHHhhccC---CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccC-C----CCe
Q 013210 172 ISDHEMVNSAIVQG---RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR-L----GAD 238 (447)
Q Consensus 172 ~~d~~~l~~~i~~~---~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~-----~~~-~----g~d 238 (447)
..|+++|+++++.. ++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+.+. ... . ++|
T Consensus 156 ~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~d 235 (398)
T 3a2b_A 156 HNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVD 235 (398)
T ss_dssp TTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCS
T ss_pred CCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCe
Confidence 88999999998332 7999999999999999999999999999999999999999544321 111 1 259
Q ss_pred EEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHH-HHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013210 239 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV-AFELSERIPHLGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 239 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~-a~~~~~~~~~l~~~~~~~~~~~~~l~~~L 317 (447)
+++.|+||+++++| ||+++++++++.+.............++.+.+ +..++...+++....+++.++++++.+.|
T Consensus 236 i~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L 311 (398)
T 3a2b_A 236 LIMGTFSKSLASLG----GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQL 311 (398)
T ss_dssp EEEEESSSTTCSSC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCC----cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999765 89999999988887642212112233333332 22333333333456677889999999999
Q ss_pred HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccC
Q 013210 318 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 318 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
++.+.++..| .|.++++.++.......+.+.|... | +.+..|..+..
T Consensus 312 ~~~g~~~~~~--------------------~g~~~~~~~~~~~~~~~l~~~l~~~---g-i~v~~~~~~~~--------- 358 (398)
T 3a2b_A 312 LDHGFDLGAT--------------------ESPILPIFIRSNEKTFWVTKMLQDD---G-VFVNPVVSPAV--------- 358 (398)
T ss_dssp HHTTCCBCSC--------------------CSSEEEEECCCHHHHHHHHHHHHHT---T-EECEEECTTTS---------
T ss_pred HhcCCCcCCC--------------------CCCEEEEEcCCHHHHHHHHHHHHHC---C-cEEEeeCCCCC---------
Confidence 9876544321 2569999998655567788887753 3 45555522110
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
...++.+|||++ ...+++.++.+.++|+++.+
T Consensus 359 -----------~~~~~~iRis~~-~~~~~e~i~~~~~~l~~~l~ 390 (398)
T 3a2b_A 359 -----------PAEESLIRFSLM-ATHTYDQIDEAIEKMVKVFK 390 (398)
T ss_dssp -----------CGGGCEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCceEEEEEe-CCCCHHHHHHHHHHHHHHHH
Confidence 012478999999 76667777777777665543
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-31 Score=260.55 Aligned_cols=334 Identities=12% Similarity=0.123 Sum_probs=228.2
Q ss_pred ccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCC
Q 013210 67 TFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC----SSGG 139 (447)
Q Consensus 67 t~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~----~~gd 139 (447)
++..+.+ +++.+.+...++|+.+.|.+++...+...++++.+|+++|.+ .+++|+||++|+.++++++. ++||
T Consensus 10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd 89 (382)
T 4eb5_A 10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGK 89 (382)
T ss_dssp CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCC
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCC
Confidence 3444455 777777766667776656666555677899999999999976 69999999999999999987 8999
Q ss_pred eEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh
Q 013210 140 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 214 (447)
Q Consensus 140 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~ 214 (447)
+|+++.++|+++...+. .+.. .|.++++++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|++
T Consensus 90 ~Vl~~~~~~~~~~~~~~-~~~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 166 (382)
T 4eb5_A 90 HILVSAVEHMSVINPAK-FLQK-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHANNEIGTIQPVEEISEVLAG 166 (382)
T ss_dssp EEEEETTCCHHHHHHHH-HHTT-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHTT
T ss_pred EEEECCCcchHHHHHHH-HHHh-CCcEEEEeccCCCCccCHHHHHHHh-cCCCeEEEEeccCCCccccCCHHHHHHHHHH
Confidence 99999999999887763 2333 68899888863 899999999 6789999999999999999999999999999
Q ss_pred cCCEEEEeCCCCC--CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh----hhhhcCCCc-cHH
Q 013210 215 KGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG----ALMLLGPTM-NPK 287 (447)
Q Consensus 215 ~gi~livD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~----~~~~~g~~~-~~~ 287 (447)
+|++ |+|++|+. ...+...+++|+++.|+||++|++| + |+++.+++. .+.....+ .....++.. ...
T Consensus 167 ~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (382)
T 4eb5_A 167 KAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEA--KLQPVILGGGQENGLRSGSENVPSI 240 (382)
T ss_dssp SSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSS--C-EEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHH
T ss_pred CCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCc--e-EEEEEcccc--ccCceecCCCccccccCCCccHHHH
Confidence 9999 99999942 2223233478999999999988766 4 777665542 11111100 001122222 122
Q ss_pred HH-HHHHccC-CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013210 288 VA-FELSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 364 (447)
Q Consensus 288 ~a-~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~ 364 (447)
.+ ..++..+ +.+....+++.++++++.+.|++++ .++..|. . ...+++++|.+++. ....
T Consensus 241 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~-~~~~ 303 (382)
T 4eb5_A 241 VGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHP--E--------------KRLPNNVNVRFSYI-EGES 303 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCS--S--------------SBCTTEEEEEETTS-CHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCc--c--------------cCCCCEEEEEeCCc-CHHH
Confidence 21 1222211 2345566778889999999998863 3443321 0 01356889998732 2456
Q ss_pred HHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 365 l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.+.|... | +.++.|..++ .....++.....+|.+ ++.+|||++ ...+++.++.+.++|+++
T Consensus 304 ~~~~l~~~---g-i~v~~g~~~~--------~~~~~~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 304 IVLSLDMA---G-IQASTGSACS--------SKTLQPSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp HHHHHHHH---T-CBCBCCCGGG--------TSSCCCCHHHHHTTCCHHHHTTEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC---C-EEEecccccc--------CCCCcccHHHHHcCCChhccCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 77777643 3 5666664322 1112233455556664 589999999 766566565555555443
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=257.20 Aligned_cols=274 Identities=14% Similarity=0.199 Sum_probs=210.1
Q ss_pred HHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-----CC
Q 013210 102 LNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SD 174 (447)
Q Consensus 102 ~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-----~d 174 (447)
.++++.+|+++|. +.+++|+||++|+++++++++++||+|+++.|+|+++...+. ..|.++.+++. .|
T Consensus 68 ~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d 142 (365)
T 3get_A 68 IELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAK-----QCGAKCYKTQSITHNLDE 142 (365)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----HHTCEEEECSSSSCCHHH
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEEecCCCCCCC
Confidence 6899999999995 569999999999999999999999999999999999887763 26888888886 36
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH--hcCCEEEEeCCCCCCC--------CCcc----CCCCeEE
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH--DKGVTVVVDNTFSPLV--------LSPA----RLGADVV 240 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~--~~gi~livD~~~~~~~--------~~~~----~~g~di~ 240 (447)
+++|++++ ++++++|++++|+||||.++|++++.++++ ++|+++|+|++|+.+. .+.. ..+.+++
T Consensus 143 ~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (365)
T 3get_A 143 FKKLYETH-KDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLY 221 (365)
T ss_dssp HHHHHHHT-TTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEE
T ss_pred HHHHHHHh-CCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEE
Confidence 88999999 788999999999999999999998888888 7799999999995433 1221 2367899
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
+.|+||.+|++|.|+ |+++.++++++.+...+.. ...+.+.+.++..++...+++....+++.++++++.+.|+++
T Consensus 222 ~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 297 (365)
T 3get_A 222 LGTFSKLYGLGGLRI-GYGIANANIISAFYKLRAP---FNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH 297 (365)
T ss_dssp EEESSSTTSCTTTCC-EEEEECHHHHHHHHHHSCT---TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeecchHhcCcchhe-EEEEcCHHHHHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998 9998899999988876652 223333334444445443446677778899999999999988
Q ss_pred CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCC
Q 013210 321 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 400 (447)
Q Consensus 321 ~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~ 400 (447)
+.++. +. .|.++++.++.. +...+.+.|... | +.++.|..
T Consensus 298 g~~~~-~~-------------------~~~~~~~~~~~~-~~~~~~~~l~~~---g-i~v~~g~~--------------- 337 (365)
T 3get_A 298 NIKII-DS-------------------YTNFITYFFDEK-NSTDLSEKLLKK---G-IIIRNLKS--------------- 337 (365)
T ss_dssp TCEEC-CC-------------------SSSEEEEECSSS-CHHHHHHHHHTT---T-EECEECGG---------------
T ss_pred CCEEC-CC-------------------CCeEEEEECCCC-CHHHHHHHHHHC---C-EEEEECcc---------------
Confidence 66553 21 355889998743 356777777753 3 56565522
Q ss_pred CHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 401 NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 401 ~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+ ++.+|||++ . ++.++.+.++|++
T Consensus 338 -------~~--~~~iRis~~-~---~~~i~~l~~~l~~ 362 (365)
T 3get_A 338 -------YG--LNAIRITIG-T---SYENEKFFTEFDK 362 (365)
T ss_dssp -------GT--CSEEEEECC-C---HHHHHHHHHHHHH
T ss_pred -------CC--CCEEEEEcC-C---HHHHHHHHHHHHH
Confidence 12 478999999 3 3445555555544
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=251.33 Aligned_cols=278 Identities=16% Similarity=0.202 Sum_probs=209.4
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
++...++++.+|++++. +.+++|+||++|+.+++++++++||+|+++.+.|+++...+. ..|.++.+++.+
T Consensus 66 ~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~ 140 (363)
T 3ffh_A 66 DGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNAL-----IEGAEVREIPLLQD 140 (363)
T ss_dssp ---CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHH-----HHTCEEEEEECCTT
T ss_pred CcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHH-----HcCCEEEEecCCCC
Confidence 44568999999999996 569999999999999999999999999999999999887763 258888888876
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc--CCEEEEeCCCCCCCC----Ccc----CCCCeEE
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVL----SPA----RLGADVV 240 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~----~~~----~~g~di~ 240 (447)
|+++|++++ ++++++|++++|+||||.+.|+++|.++++.+ |+++|+|++|+.+.. ... ..+.+++
T Consensus 141 ~~~d~~~l~~~i-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~ 219 (363)
T 3ffh_A 141 GEHDLEGMLNAI-DEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLII 219 (363)
T ss_dssp SCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEE
T ss_pred CCcCHHHHHHhc-ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEE
Confidence 999999999 78899999999999999999999999999887 999999999964432 111 2356799
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh-
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK- 319 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~- 319 (447)
+.|+||.+|++|.|+ |+++.++++++.+...... ...+.+.+.++..++...+++....+++.++++++.+.|++
T Consensus 220 ~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 295 (363)
T 3ffh_A 220 TRTFSKIYGLASARV-GYGIADKEIIRQLNIVRPP---FNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF 295 (363)
T ss_dssp EEESSSTTCCSSCCC-EEEEECHHHHHHHHHTCCS---CCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EeechhhhcCchhce-eeeecCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999998 9998899999888776541 22233333334444443345666777889999999999998
Q ss_pred CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCC
Q 013210 320 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399 (447)
Q Consensus 320 ~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~ 399 (447)
.+..+. |. .|.++++.++. +...+.+.|... | +.++.|..
T Consensus 296 ~g~~~~-~~-------------------~~~~~~~~~~~--~~~~~~~~l~~~---g-i~v~~g~~-------------- 335 (363)
T 3ffh_A 296 EKVKLY-PA-------------------NGNFVLIDLGI--EAGTIFSYLEKN---G-YITRSGAA-------------- 335 (363)
T ss_dssp TTCEEC-CC-------------------CSSEEEEECSS--CHHHHHHHHHHT---T-EECEETTT--------------
T ss_pred CCceEC-CC-------------------CCeEEEEECCC--CHHHHHHHHHHC---C-eEEEeCcc--------------
Confidence 455543 22 35688999874 245677777653 3 45555522
Q ss_pred CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 400 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+. ++.+|||++ +++.++.+.++|++
T Consensus 336 --------~~~-~~~iRis~~----~~~~i~~~~~~l~~ 361 (363)
T 3ffh_A 336 --------LGF-PTAVRITIG----KEEDNSAVIALLEK 361 (363)
T ss_dssp --------TTC-TTEEEEECC----CHHHHHHHHHHHHH
T ss_pred --------CCC-CCeEEEECC----CHHHHHHHHHHHHH
Confidence 122 478999999 33445555555544
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=258.69 Aligned_cols=323 Identities=15% Similarity=0.202 Sum_probs=227.1
Q ss_pred HHHHHhhcCCCCCCCC-CccccCCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHh----cCCCCeEEEeC
Q 013210 74 ETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQL----CSSGGHVVAAR 145 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l----~~~gd~Vi~~~ 145 (447)
+.+.+.+...++|+.. .+.++....+...++++.+|+++|. +.+++|+||++|+.++++++ +++||+|+++.
T Consensus 41 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~ 120 (406)
T 1kmj_A 41 DAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQ 120 (406)
T ss_dssp HHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEET
T ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEec
Confidence 6666666555555543 3444444456778999999999998 56999999999999999998 88999999999
Q ss_pred CCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEE
Q 013210 146 TLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 220 (447)
Q Consensus 146 ~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~li 220 (447)
++|++....+...... .|.++.+++.+ |+++|++++ ++++++|++++++||||.+.|+++|.++|++||+++|
T Consensus 121 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li 198 (406)
T 1kmj_A 121 MEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPTLF-DEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198 (406)
T ss_dssp TCCGGGTHHHHHHHHH-HTCEEEEECBCTTSCBCGGGHHHHC-CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred ccchHHHHHHHHHHHh-CCCEEEEEecCCCCCcCHHHHHHHh-ccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEE
Confidence 9999876554333333 58888888764 789999999 7789999999999999999999999999999999999
Q ss_pred EeCCCCCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh-------------------hh
Q 013210 221 VDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL-------------------ML 279 (447)
Q Consensus 221 vD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~-------------------~~ 279 (447)
+|++|+.. ..+....++|+++.|+||.+|++| + |+++.++++++.+.....+.. ..
T Consensus 199 ~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (406)
T 1kmj_A 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG--I-GILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFE 275 (406)
T ss_dssp EECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGC
T ss_pred EEchhhcCCCCCcccccCCCEEEEEchhccCCCC--c-EEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhcc
Confidence 99999432 223334479999999999998877 5 999999988887754332110 01
Q ss_pred cCC-CccHHHHH-HHHccCC--cHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013210 280 LGP-TMNPKVAF-ELSERIP--HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 354 (447)
Q Consensus 280 ~g~-~~~~~~a~-~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 354 (447)
.++ .+.+.++. .++..+. .+....+++.++++++.+.|++. +.++..|. +.|+++.|
T Consensus 276 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------------------~~~~~~~~ 337 (406)
T 1kmj_A 276 AGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ------------------NRLGVIAF 337 (406)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT------------------TCCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC------------------CcCCEEEE
Confidence 122 22222222 2222221 34456677788999999999887 34554332 13568888
Q ss_pred EeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 355 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 355 ~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
.+++.+ ...+.+.|... | +.+..|..+. ......+|. ++.+|||++ ..++++.++.+.+
T Consensus 338 ~~~~~~-~~~~~~~l~~~---g-i~v~~g~~~~--------------~~~~~~~g~-~~~iRis~~-~~~t~~~i~~~~~ 396 (406)
T 1kmj_A 338 NLGKHH-AYDVGSFLDNY---G-IAVRTGHHCA--------------MPLMAYYNV-PAMCRASLA-MYNTHEEVDRLVT 396 (406)
T ss_dssp EETTCC-HHHHHHHHHHT---T-EECEEECTTC--------------HHHHHHTTC-SCEEEEECC-TTCCHHHHHHHHH
T ss_pred EECCCC-HHHHHHHHhhC---C-cEEEeccccc--------------hHHHHhcCC-CCeEEEEee-cCCCHHHHHHHHH
Confidence 886322 34566666643 3 4555553221 011112232 478999999 8878888888888
Q ss_pred HHHHhh
Q 013210 435 ALSRMQ 440 (447)
Q Consensus 435 al~~~~ 440 (447)
+|+++.
T Consensus 397 ~l~~~~ 402 (406)
T 1kmj_A 397 GLQRIH 402 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887664
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=257.80 Aligned_cols=327 Identities=16% Similarity=0.179 Sum_probs=228.0
Q ss_pred HHHHHhhcCCCCCCC-CCccccCCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHh----cCCCCeEEEeC
Q 013210 74 ETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQL----CSSGGHVVAAR 145 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l----~~~gd~Vi~~~ 145 (447)
+.+.+.+....+|+. +.+.|+....+...++++.+|+++|. +.+++|+||++|+.++++++ +++||+|+++.
T Consensus 46 ~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~ 125 (420)
T 1t3i_A 46 EKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTV 125 (420)
T ss_dssp HHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEET
T ss_pred HHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECc
Confidence 566666655555554 34666654456678999999999998 67999999999999999998 88999999999
Q ss_pred CCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEE
Q 013210 146 TLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 220 (447)
Q Consensus 146 ~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~li 220 (447)
++|++....+...... .|.++.+++.+ |+++|++++ ++++++|++++++||+|.+.|+++|.++|+++|+++|
T Consensus 126 ~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li 203 (420)
T 1t3i_A 126 MEHHSNLVPWQMVAAK-TGAVLKFVQLDEQESFDLEHFKTLL-SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVL 203 (420)
T ss_dssp TCCGGGTHHHHHHHHH-HCCEEEEECBCTTSSBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEE
T ss_pred chhHHHHHHHHHHHHh-cCcEEEEeccCCCCCcCHHHHHHhh-CCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEE
Confidence 9999964333222222 58888888763 899999999 7789999999999999999999999999999999999
Q ss_pred EeCCCCCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh------------------hhc
Q 013210 221 VDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL------------------MLL 280 (447)
Q Consensus 221 vD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~------------------~~~ 280 (447)
+|++|+.. ..+...+++|+++.|+||.+|++| + |+++.++++++.+.....+.. ...
T Consensus 204 ~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (420)
T 1t3i_A 204 VDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG--I-GFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEA 280 (420)
T ss_dssp EECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCC
T ss_pred EEhhhccCCccCchhhcCCCEEEEehhhhcCCCc--e-EEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccC
Confidence 99999432 223344579999999999998777 4 999999988877754332110 011
Q ss_pred CC-CccHHHHHH-HHccCC--cHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 281 GP-TMNPKVAFE-LSERIP--HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 281 g~-~~~~~~a~~-~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
+. ...+..+.. ++..+. .+....+++.++++++.+.|++. +.++..|.... .+.|++++|.
T Consensus 281 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--------------~~~~~~~~~~ 346 (420)
T 1t3i_A 281 GTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH--------------GDRAALASFN 346 (420)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG--------------SCBCSEEEEE
T ss_pred CCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccc--------------cccCCEEEEE
Confidence 22 222222222 222221 24556777889999999999987 44655442000 0146789998
Q ss_pred eCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013210 356 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA 435 (447)
Q Consensus 356 l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a 435 (447)
+++. ....+.+.|... | +.+..|..+.. .....+|. ++.+|||++ ...+++.++.+.++
T Consensus 347 ~~~~-~~~~~~~~l~~~---g-i~v~~~~~~~~--------------~~~~~~g~-~~~iRis~~-~~~~~~~i~~~~~~ 405 (420)
T 1t3i_A 347 VAGL-HASDVATMVDQD---G-IAIRSGHHCTQ--------------PLHRLFDA-SGSARASLY-FYNTKEEIDLFLQS 405 (420)
T ss_dssp ETTB-CHHHHHHHHHTT---T-EECBCSCTTCH--------------HHHHHTTC-CCCEEEECC-TTCCHHHHHHHHHH
T ss_pred ECCC-CHHHHHHHHHHC---C-eEEeeccccch--------------HHHHhcCC-CCeEEEecC-CCCCHHHHHHHHHH
Confidence 8742 245666777653 3 45555532210 11111232 578999999 87777777777777
Q ss_pred HHHhh
Q 013210 436 LSRMQ 440 (447)
Q Consensus 436 l~~~~ 440 (447)
|+++.
T Consensus 406 l~~~~ 410 (420)
T 1t3i_A 406 LQATI 410 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=265.74 Aligned_cols=336 Identities=14% Similarity=0.098 Sum_probs=221.8
Q ss_pred ccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCC
Q 013210 67 TFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC----SSGG 139 (447)
Q Consensus 67 t~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~----~~gd 139 (447)
+++.+.+ +.+.+.+...++||.+.|.+++...+..+++++.+|+++|++ .+++|+||++|+.+++++++ ++||
T Consensus 30 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd 109 (400)
T 3vax_A 30 TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGR 109 (400)
T ss_dssp SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCC
Confidence 3433444 667776666667777777777777788899999999999985 59999999999999999987 8899
Q ss_pred -eEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH
Q 013210 140 -HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 213 (447)
Q Consensus 140 -~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~ 213 (447)
+|+++.++|+++...+... .+ .|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.|+++|.++|+
T Consensus 110 ~~Vl~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~la~ 186 (400)
T 3vax_A 110 RHIITSAIEHKAVLEPLEHL-AG-RGFEVDFLTPGPSGRISVEGVMERL-RPDTLLVSLMHVNNETGVIQPVAELAQQLR 186 (400)
T ss_dssp CEEEEETTSCHHHHHHHHHH-HT-TTCEEEEECCCTTCCCCHHHHHTTC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHT
T ss_pred CEEEECccccHhHHHHHHHH-Hh-cCCeEEEEccCCCCCcCHHHHHHhc-CCCceEEEEECCCCCceeeCcHHHHHHHHH
Confidence 9999999999988877443 33 68899998876 899999999 778999999999999999999999999999
Q ss_pred hcCCEEEEeCCCCC--CCCCccCCCCeEEEeCCCccccCCCCeeEEEEE-cCh-HHH---HHHHHHhhh---hhhhcCCC
Q 013210 214 DKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVC-GPA-NLV---NSMMDLHQG---ALMLLGPT 283 (447)
Q Consensus 214 ~~gi~livD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~-~~~-~~~---~~l~~~~~~---~~~~~g~~ 283 (447)
++|+++|+|++|+. ...+...+ +|+++.|+||++|+.| + |+++ .++ ++. ..+.....+ .......+
T Consensus 187 ~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (400)
T 3vax_A 187 ATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKG--V-GALVTRRREEMDDERVPLEPIMFGGGQERKLRPGT 262 (400)
T ss_dssp TSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSS--C-EEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSC
T ss_pred hcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCc--e-EEEEEecchhccccccccCceecCCCceeeeecCC
Confidence 99999999999942 22333344 8999999999888666 4 6666 544 111 111111100 00011222
Q ss_pred ccHH--HHH-HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013210 284 MNPK--VAF-ELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 359 (447)
Q Consensus 284 ~~~~--~a~-~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~ 359 (447)
.+.. .+. .++.. .+.+....+++.++++++.+.|+..+.++..|... +.+++++|.+++.
T Consensus 263 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 326 (400)
T 3vax_A 263 LPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDH----------------VVPHILNLSFEDV 326 (400)
T ss_dssp CCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTS----------------BCTTEEEEECTTC
T ss_pred CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCccc----------------CCCCEEEEEeCCC
Confidence 2222 211 12211 12356677778889999999998223455433210 2355889988743
Q ss_pred HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEEe-CCCCCHHHHHHHHHH
Q 013210 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSV-GYLGTLDQRWSQFEK 434 (447)
Q Consensus 360 ~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS~-g~~~~~~~~i~~l~~ 434 (447)
+...+.+.|. .+ +.++.|..+.. ....+++....+|++ ++.||||+ | ...+++.++.+.+
T Consensus 327 -~~~~l~~~L~-~g----i~v~~g~~~~~--------~~~~~~~~~~~~g~~~~~~~~~iRls~~~-~~~t~e~i~~~~~ 391 (400)
T 3vax_A 327 -DAEAFLVTLK-DL----VAVATGSASTS--------ASFTPSHVLRAMGLPEEAASKSLRFSWTP-GQATDLDVEELAR 391 (400)
T ss_dssp -CHHHHHHHHH-HH----HHHTTTTEEEE--------EEECCHHHHHTTTCCHHHHTSEEEEEEEE-C------------
T ss_pred -CHHHHHHHHh-cC----cEEEecccccC--------CCCCccHHHHHcCCCccccCceEEEEccC-CCCCHHHHHHHHH
Confidence 2456677776 54 67777744322 222344555666776 48999999 8 7777787888877
Q ss_pred HHHHhh
Q 013210 435 ALSRMQ 440 (447)
Q Consensus 435 al~~~~ 440 (447)
+|+++.
T Consensus 392 ~l~~~~ 397 (400)
T 3vax_A 392 GVAKLK 397 (400)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 777653
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=249.37 Aligned_cols=289 Identities=12% Similarity=0.102 Sum_probs=215.5
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHH
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE 176 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 176 (447)
..+...++++.+++++|.+..+++++|++|+..++++++++||.|+++.+.|+.+...+. ..|.++..++..|++
T Consensus 82 ~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~d~~ 156 (384)
T 1bs0_A 82 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAAS-----LSPSQLRRFAHNDVT 156 (384)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----TSSSEEEEECTTCHH
T ss_pred ChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHH-----HcCCCEEEeCCCCHH
Confidence 457788999999999999889999999999999999999999999999999998887763 368899999988999
Q ss_pred HHHHhhccC--CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC--------ccCCCCeEEEeCCCc
Q 013210 177 MVNSAIVQG--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS--------PARLGADVVVHSISK 246 (447)
Q Consensus 177 ~l~~~i~~~--~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~--------~~~~g~di~~~S~sK 246 (447)
+|++++++. ++++|++++|+||||.+.|+++|.++|++||+++|+|++|+.+.+. ....+.|+++.|+||
T Consensus 157 ~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK 236 (384)
T 1bs0_A 157 HLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGK 236 (384)
T ss_dssp HHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSS
T ss_pred HHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccc
Confidence 999988432 3889999999999999999999999999999999999999433221 112358999999999
Q ss_pred cccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhc-CCCccHHHHHHHHccCC--cHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013210 247 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLL-GPTMNPKVAFELSERIP--HLGLRMKEHCHRALIFARRMKKLGLK 323 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~-g~~~~~~~a~~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~~~ 323 (447)
+++++| |++++++++++.+........... .+.....++..++..+. ......+++.++++++.+.|++++.+
T Consensus 237 ~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 312 (384)
T 1bs0_A 237 GFGVSG----AAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFT 312 (384)
T ss_dssp TTSSCC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred hhhccC----cEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999654 999999999888876432111111 12222222233333333 34566778899999999999887665
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHH
Q 013210 324 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403 (447)
Q Consensus 324 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~ 403 (447)
+. +. .|+++++.++.......+.+.|... | +.+..|.. +..
T Consensus 313 ~~-~~-------------------~~~~~~~~~~~~~~~~~l~~~l~~~---g-i~v~~~~~------~~~--------- 353 (384)
T 1bs0_A 313 LA-DS-------------------CSAIQPLIVGDNSRALQLAEKLRQQ---G-CWVTAIRP------PTV--------- 353 (384)
T ss_dssp EC-SC-------------------CSSBCCEEEESHHHHHHHHHHHHHT---T-EECCEECT------TSS---------
T ss_pred cc-CC-------------------CCCEEEEEeCCHHHHHHHHHHHHHC---C-cEEEeecC------CCC---------
Confidence 43 21 3557888887555567788887753 3 45554421 100
Q ss_pred HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 404 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 404 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
....+.+|||++ ...+++.++.+.++|+++
T Consensus 354 -----~~~~~~~Ri~~~-~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 354 -----PAGTARLRLTLT-AAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp -----CTTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred -----CCCCceEEEEEc-CCCCHHHHHHHHHHHHhh
Confidence 112478999999 887888888888888764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=252.02 Aligned_cols=295 Identities=15% Similarity=0.110 Sum_probs=210.2
Q ss_pred ccccCCCCchHHHHHHHHHHHhC----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 166 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 166 (447)
+.|+....+..+.+++.+++.+| .+.+++|+||++|+++++++++++||+|+++.++|+++...+. ..|.+
T Consensus 58 ~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~ 132 (391)
T 3dzz_A 58 FGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIE-----GNGRR 132 (391)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHH-----HTTCE
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHH-----HcCCE
Confidence 44555545556667777777766 4569999999999999999999999999999999999887773 26788
Q ss_pred EEEeCC--------CCHHHHHHhhccCCceEEEEEcCCCCCccc---cCHHHHHHHHHhcCCEEEEeCCCCCCCCC----
Q 013210 167 TTFVDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVLS---- 231 (447)
Q Consensus 167 ~~~v~~--------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v---~~l~~I~~la~~~gi~livD~~~~~~~~~---- 231 (447)
+..++. .|+++|+++++++++++|++++|+||||.+ .++++|+++|++||+++|+|++|+.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 212 (391)
T 3dzz_A 133 VISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDI 212 (391)
T ss_dssp EEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred EEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCc
Confidence 888776 489999999943789999999999999999 56889999999999999999999654332
Q ss_pred --ccCCC---Ce--EEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHH
Q 013210 232 --PARLG---AD--VVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLR 302 (447)
Q Consensus 232 --~~~~g---~d--i~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~ 302 (447)
...++ .| +++.|+||++|++|.|+ |+++.+ +++++.+............+.+.+.++..++... +.+...
T Consensus 213 ~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 291 (391)
T 3dzz_A 213 TPAFTVDWDAKNWVVSLISPSKTFNLAALHA-ACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLREL 291 (391)
T ss_dssp CCGGGSCTTTGGGEEEEECSHHHHTCTTTCC-EEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHH
T ss_pred eehhhcCccccCcEEEEEeChhhccccchhh-eEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHH
Confidence 22222 34 99999999999899998 999887 8888888766442222334444444444444432 335667
Q ss_pred HHHHHHHHHHHHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh-cccccccc
Q 013210 303 MKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ-NYAQFGFM 378 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~-~~~~~g~~ 378 (447)
.+++.++++++.+.|++ . +..+..|. .+.++++.++.. .....+.+.|. .. | +
T Consensus 292 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~---g-i 348 (391)
T 3dzz_A 292 KQVLRDNFAYAREFLAKEVPEVKVLDSN-------------------ASYLAWVDISALGMNAEDFCKYLREKT---G-L 348 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSEECCCC-------------------BSSEEEEECGGGCSCHHHHHHHHHHHH---C-E
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEEeccC-------------------ceEEEEEehhhcCCCHHHHHHHHHHhC---C-E
Confidence 77788999999999988 5 44554332 344677887631 23566777773 42 3 5
Q ss_pred cccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 379 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 379 ~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.++.|..+ .. ..++.+|||++ . +++.++.+.+.|.+
T Consensus 349 ~v~~g~~~--------~~-------------~~~~~iRis~~-~--~~~~i~~~l~~l~~ 384 (391)
T 3dzz_A 349 IISAGNGY--------RG-------------NGHEFVRINLA-C--PKELVIDGMQRLKQ 384 (391)
T ss_dssp ECEESGGG--------CT-------------TGGGEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred EEeCchhh--------CC-------------CCCCEEEEEec-C--CHHHHHHHHHHHHH
Confidence 66655321 10 12478999999 5 33444444444433
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=250.09 Aligned_cols=312 Identities=13% Similarity=0.179 Sum_probs=226.2
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHH
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHA 153 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~ 153 (447)
+.+.+.+.. ++.+...+.|.....+...++++.+++++|.+..+++++|++|+..++++++++||.|+++.++|+++..
T Consensus 64 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~ 142 (399)
T 3tqx_A 64 KTAQTVVEQ-YGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIID 142 (399)
T ss_dssp HHHHHHHHH-HCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH
T ss_pred HHHHHHHHH-hCCCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHH
Confidence 444444433 3333333444444567789999999999999988888899999999999999999999999999999887
Q ss_pred HHHhhcCcccCeeEEEeCCCCHHHHHHhhcc-----CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-C
Q 013210 154 LLTHFFPRACNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P 227 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~ 227 (447)
.+. ..|.++..++..|+++|+++++. .++++|++++|+||||.+.|+++|.++|++||+++|+|++|+ +
T Consensus 143 ~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~ 217 (399)
T 3tqx_A 143 GIR-----LCKAQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVG 217 (399)
T ss_dssp HHH-----SCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred HHH-----HcCCceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCcccc
Confidence 763 36889999988899999988832 179999999999999999999999999999999999999993 3
Q ss_pred CC-CC------ccC--CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHH---HHHHcc
Q 013210 228 LV-LS------PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA---FELSER 295 (447)
Q Consensus 228 ~~-~~------~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a---~~~~~~ 295 (447)
+. .. ... .+.|+++.|+||++++ .+ |||+++++++++.+........ .+++.++..+ ...+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g--~~-gG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 292 (399)
T 3tqx_A 218 FIGENGRGTPEYCGVADRVDILTGTLGKALGG--AS-GGYTSGHKEIIEWLRNRSRPYL--FSNTVAPVIVATSLKVLEL 292 (399)
T ss_dssp TSSTTSCCHHHHHTCTTCCSEEEEESSSSSCS--SC-CEEEEECHHHHHHHHHHCHHHH--SSCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCchHHhhCCCCCCcEEEecchHhccc--Cc-eEEEEcCHHHHHHHHHhCccee--ccCCCcHHHHHHHHHHHHH
Confidence 32 11 111 1579999999999992 23 4999999999988876543221 2223333322 222322
Q ss_pred C-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccc
Q 013210 296 I-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQ 374 (447)
Q Consensus 296 ~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~ 374 (447)
. +......+++.++++++.+.|++.+.++. + ..|+++++.++.......+.+.|...
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~-- 350 (399)
T 3tqx_A 293 LKTEGPQLRKQLQENSRYFRAGMEKLGFQLV-P-------------------GNHPIIPVMLGDAQLATNMADHLLQE-- 350 (399)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHTCCBC-C-------------------CSSSEEEEEEECHHHHHHHHHHHHHT--
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHcCCCcC-C-------------------CCCCEEEEEeCCHHHHHHHHHHHHHC--
Confidence 2 34566777889999999999988765443 2 24669999998766677888888763
Q ss_pred cccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 375 FGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 375 ~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
| +.+..+.. +.. ...++.+|||++ ...+++.++.+.++|+++.+
T Consensus 351 -g-i~v~~~~~------~~~--------------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~ 394 (399)
T 3tqx_A 351 -G-IYVVGFSY------PVV--------------PMGKARIRVQMS-AVHTQQQLDRAIEAFGQVGK 394 (399)
T ss_dssp -T-EECCEECT------TTS--------------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred -C-CEEeeeCC------CCC--------------CCCCceEEEEee-cCCCHHHHHHHHHHHHHHHH
Confidence 3 34332211 100 112468999999 77777777777777776544
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=252.78 Aligned_cols=291 Identities=14% Similarity=0.106 Sum_probs=216.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHH
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE 176 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 176 (447)
..+...++++.|++++|.+.+++++||++|+..++++++++||.|+++.+.|+++...+. ..|.++..++..|++
T Consensus 107 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~-----~~g~~~~~~~~~d~~ 181 (427)
T 2w8t_A 107 TFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQ-----QGNAEIVRFRHNSVE 181 (427)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHH-----HSCSEEEEECTTCHH
T ss_pred CcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHH-----HcCCeeEEeCCCCHH
Confidence 356778999999999999999999999999999999999999999999999999887763 257888888888999
Q ss_pred HHHHhhccC---CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc--------c--CCCCeEEEeC
Q 013210 177 MVNSAIVQG---RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP--------A--RLGADVVVHS 243 (447)
Q Consensus 177 ~l~~~i~~~---~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~--------~--~~g~di~~~S 243 (447)
+|++++++. ++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.+.. . ..++|+++.|
T Consensus 182 ~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s 261 (427)
T 2w8t_A 182 DLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGT 261 (427)
T ss_dssp HHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred HHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEec
Confidence 999998332 78999999999999999999999999999999999999995543321 1 1257999999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHH-HHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~-~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
+||++|++| |++++++++++.+...........+.++...++. ..+..++.+....+++.++++++.+.|++.+.
T Consensus 262 ~sK~~g~~g----G~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 337 (427)
T 2w8t_A 262 FSKSVGTVG----GFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGF 337 (427)
T ss_dssp SSSTTCSCC----EEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhccCC----CEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999654 9999988887776543221111112222222222 33333344466778889999999999988766
Q ss_pred eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCH
Q 013210 323 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA 402 (447)
Q Consensus 323 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~ 402 (447)
.+..+. +.|+++++.+++......+.+.|... | +.+..|.. +..
T Consensus 338 ~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~L~~~---G-i~v~~~~~------~~~-------- 381 (427)
T 2w8t_A 338 RLGTET------------------CDSAIVAVMLEDQEQAAMMWQALLDG---G-LYVNMARP------PAT-------- 381 (427)
T ss_dssp EESCSS------------------CCSSEEEEEESSHHHHHHHHHHHHHT---T-EECEEECT------TTS--------
T ss_pred cccCCC------------------CCCCEEEEEECCHHHHHHHHHHHHHC---C-eEEeeeCC------CCC--------
Confidence 554221 14569999998765677888888763 3 44444421 110
Q ss_pred HHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 403 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 403 ~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
....+.+|||++ ..++++.++.+.++|+++
T Consensus 382 ------~~~~~~lRi~~~-~~~t~e~i~~~~~~l~~~ 411 (427)
T 2w8t_A 382 ------PAGTFLLRCSIC-AEHTPAQIQTVLGMFQAA 411 (427)
T ss_dssp ------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred ------CCCCeEEEEEeC-CCCCHHHHHHHHHHHHHH
Confidence 012468999999 877777777777777655
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=248.91 Aligned_cols=282 Identities=14% Similarity=0.136 Sum_probs=209.0
Q ss_pred chHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHH
Q 013210 99 PTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE 176 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 176 (447)
+...++++.+|+++|. +.+++|+||++|+++++++++++||+|+++.|+|+++...+. ..|.++.+++.++..
T Consensus 65 ~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~ 139 (360)
T 3hdo_A 65 ASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAE-----VQGARVRTFGLTGDF 139 (360)
T ss_dssp SSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HHTCEEEEECBCTTS
T ss_pred CchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHH-----HCCCEEEEeeCCCCC
Confidence 3447899999999994 569999999999999999999999999999999999887763 268888888765321
Q ss_pred HHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC-c----cCCCCeEEEeCCCccccCC
Q 013210 177 MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS-P----ARLGADVVVHSISKFISGG 251 (447)
Q Consensus 177 ~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~-~----~~~g~di~~~S~sK~~g~~ 251 (447)
.+++..+..++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+... . ...+.++++.|+||.+|++
T Consensus 140 ~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 219 (360)
T 3hdo_A 140 RIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLA 219 (360)
T ss_dssp SBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCT
T ss_pred CHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCC
Confidence 2222221235679999999999999999999999999999999999999654321 1 1236789999999999999
Q ss_pred CCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCC
Q 013210 252 ADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLED 331 (447)
Q Consensus 252 g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~ 331 (447)
|.|+ ||++.++++++.+...... ...+.+.+.++..++...+++..+.+++.++++++.+.|++++..+. +.
T Consensus 220 G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~--- 291 (360)
T 3hdo_A 220 GMRI-GLAIARPEVIAALDKIRDH---YNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSIGYDVI-PS--- 291 (360)
T ss_dssp TSCC-EEEECCHHHHHHHHHHSCS---CCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEC-CC---
T ss_pred ccce-eeEeeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEc-CC---
Confidence 9998 9999999999988876541 22333333344444444344667778889999999999998866543 21
Q ss_pred CchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC
Q 013210 332 HPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS 411 (447)
Q Consensus 332 ~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~ 411 (447)
.|.++++.+++. +...+.+.|... | +.++.|+. + ..
T Consensus 292 ----------------~~~~~~~~~~~~-~~~~l~~~l~~~---g-i~v~~~~~------~-----------------~~ 327 (360)
T 3hdo_A 292 ----------------QGNYLFATPPDR-DGKRVYDGLYAR---K-VLVRHFSD------P-----------------LL 327 (360)
T ss_dssp ----------------SSSEEEEECTTC-CHHHHHHHHHHT---T-EECBCCCS------T-----------------TT
T ss_pred ----------------CccEEEEECCCC-CHHHHHHHHHHC---C-EEEEECCC------C-----------------CC
Confidence 456888888743 245677777653 3 44444311 0 12
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 412 AGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 412 ~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
++.+|||++ +++.++.|.++|+++.+
T Consensus 328 ~~~iRis~~----~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 328 AHGMRISIG----TREEMEQTLAALKEIGE 353 (360)
T ss_dssp TTSEEEECC----CHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEcC----CHHHHHHHHHHHHHHhc
Confidence 478999999 45667888888887754
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=250.44 Aligned_cols=313 Identities=13% Similarity=0.116 Sum_probs=222.6
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHH
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHA 153 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~ 153 (447)
+.+.+.+.. +++..+.+.|.....+...++++.+|+++|.+..+++++|++|+..++++++++||.|+++.+.|+++..
T Consensus 66 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~ 144 (401)
T 1fc4_A 66 AAAKAGMDS-HGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIID 144 (401)
T ss_dssp HHHHHHHHH-HCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH
T ss_pred HHHHHHHHH-hCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHH
Confidence 444444432 2333333344433467789999999999999888888999999999999999999999999999988876
Q ss_pred HHHhhcCcccCeeEEEeCCCCHHHHHHhhcc--C---CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CC
Q 013210 154 LLTHFFPRACNITTTFVDISDHEMVNSAIVQ--G---RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP 227 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~--~---~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~ 227 (447)
.+. ..|.++..++..|+++|+++++. + ++++|++++|+||||.+.|+++|.++|+++|+++|+|++| .+
T Consensus 145 ~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g 219 (401)
T 1fc4_A 145 GVR-----LCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVG 219 (401)
T ss_dssp HHH-----TSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTT
T ss_pred HHH-----HcCCceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECccccc
Confidence 652 36889999988899999998832 1 7899999999999999999999999999999999999999 46
Q ss_pred CCCC-c------cC--CCCeEEEeCCCccc-cCCCCeeEEEEEcChHHHHHHHHHhhhhhhh-cCCCccHHHHHHHHccC
Q 013210 228 LVLS-P------AR--LGADVVVHSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQGALML-LGPTMNPKVAFELSERI 296 (447)
Q Consensus 228 ~~~~-~------~~--~g~di~~~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~-~g~~~~~~~a~~~~~~~ 296 (447)
+... . .. .++|+++.|+||++ ++. ||++++++++++.+.......... ..+...+.++..++..+
T Consensus 220 ~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~----gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 295 (401)
T 1fc4_A 220 FVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS----GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV 295 (401)
T ss_dssp TSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS----CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCccHHHcCCCcCCcEEEecchhhccCCC----CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHH
Confidence 5421 0 11 25799999999999 443 499999999988887654312111 11222222222222222
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013210 297 PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 376 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g 376 (447)
.......+++.++++++.+.|++.+.++. | +.|+++++.+++......+.+.|... |
T Consensus 296 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-------------------~~~~~~~~~~~~~~~~~~l~~~l~~~---g 352 (401)
T 1fc4_A 296 EAGSELRDRLWANARQFREQMSAAGFTLA-G-------------------ADHAIIPVMLGDAVVAQKFARELQKE---G 352 (401)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHTTCCBC-C-------------------SSSSEEEEEEECHHHHHHHHHHHHHT---T
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHcCCccc-C-------------------CCCCEEEEEcCChHHHHHHHHHHHHC---C
Confidence 22345677788999999999998765443 2 24669999998655567788887753 3
Q ss_pred cccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 377 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 377 ~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
+.+..|..+ .. ....+.+|||++ ...+++.++.+.++|+++.+
T Consensus 353 -i~v~~~~~~------~~--------------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~ 395 (401)
T 1fc4_A 353 -IYVTGFFYP------VV--------------PKGQARIRTQMS-AAHTPEQITRAVEAFTRIGK 395 (401)
T ss_dssp -EECCEECTT------SS--------------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred -cEEeeecCC------CC--------------CCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHH
Confidence 455544221 00 012468999999 77777777777777766543
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=250.04 Aligned_cols=252 Identities=23% Similarity=0.293 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+++++ | .+.+++|+||++|+++++++++++||+|+++.|+|+++...+. ..|.++..++.
T Consensus 70 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~ 144 (385)
T 1b5p_A 70 IPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVR-----FAGGVVVEVET 144 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEeec
Confidence 357888888776 3 2569999999999999999999999999999999999887763 25778877775
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccCC--
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARL-- 235 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~~-- 235 (447)
+ |+++|++++ ++++++|++++|+||||.+++ +++|+++|++||+++|+|++|+.+.++ ...+
T Consensus 145 ~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 223 (385)
T 1b5p_A 145 LPEEGFVPDPERVRRAI-TPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP 223 (385)
T ss_dssp CGGGTTCCCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT
T ss_pred CcccCCCCCHHHHHHhc-CCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC
Confidence 2 789999999 678999999999999999987 889999999999999999999665442 2233
Q ss_pred CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc----CCcHHHHHHHHHHHHH
Q 013210 236 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER----IPHLGLRMKEHCHRAL 311 (447)
Q Consensus 236 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~----~~~l~~~~~~~~~~~~ 311 (447)
+.++++.|+||.+|++|.|+ ||+++++++++.+...+... ....+.+.+.++..++.. .+++....+++.++++
T Consensus 224 ~~~i~~~s~SK~~~~~G~Ri-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 301 (385)
T 1b5p_A 224 EHTLTVNGAAKAFAMTGWRI-GYACGPKEVIKAMASVSRQS-TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRD 301 (385)
T ss_dssp TTEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEechhhcCCcccce-EEEEeCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 67899999999999999998 99999999988887665421 122233334334334432 2345556677888999
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
++.+.|++++.++..|. .|.++++.++. ..+...+.+.|... | +.+..|
T Consensus 302 ~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~l~~~---g-v~v~~g 351 (385)
T 1b5p_A 302 LLLEGLTALGLKAVRPS-------------------GAFYVLMDTSPIAPDEVRAAERLLEA---G-VAVVPG 351 (385)
T ss_dssp HHHHHHHHHTCCBCCCS-------------------BTTEEEEECTTTCSSHHHHHHHHHHT---T-EECEES
T ss_pred HHHHHHHHCCCeecCCC-------------------eeEEEEEecCCCCCCHHHHHHHHHHC---C-eEEecc
Confidence 99999988755544332 34467777751 11245666666642 3 455555
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=244.84 Aligned_cols=275 Identities=15% Similarity=0.176 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 100 TVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
...++++.+|+++|.+ .+++|+|+++++.+++++++++| |+|+++.|+|+++...+. ..|.++..++.+
T Consensus 59 ~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~ 133 (356)
T 1fg7_A 59 QPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVECRTVPTLDNW 133 (356)
T ss_dssp SCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH-----HHTCEEEECCCCTTS
T ss_pred cHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEeeCCCCC
Confidence 3578999999999864 69999999999999999999999 999999999999987763 257788887753
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHH---HHHHHhcCCEEEEeCCCCCCC--CCcc----CCCCeEEEe
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL---SRLAHDKGVTVVVDNTFSPLV--LSPA----RLGADVVVH 242 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I---~~la~~~gi~livD~~~~~~~--~~~~----~~g~di~~~ 242 (447)
|++++++++ + ++++|++++|+||||.+.|.++| +++|+ +|+++|+|++|..+. .+.. ..+.++++.
T Consensus 134 ~~d~~~l~~~i-~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~ 210 (356)
T 1fg7_A 134 QLDLQGISDKL-D-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILR 210 (356)
T ss_dssp CCCHHHHHTSC-T-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred CCCHHHHHHHh-c-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEe
Confidence 789999988 5 89999999999999999986555 55555 899999999995443 1221 236789999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc--HHHHHHHHHHHHHHHHHHHHhC
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH--LGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~--l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
|+||++|++|.|+ ||+++++++++.+...+.. ...+.+.+.++..++..... +....+++.++++++.+.|+++
T Consensus 211 s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 286 (356)
T 1fg7_A 211 TLSKAFALAGLRC-GFTLANEEVINLLMKVIAP---YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI 286 (356)
T ss_dssp ESSSTTCCGGGCC-EEEEECHHHHHHHHHHSCS---SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchHhhcCchhhh-EEEEeCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999998 9999999999888876542 22233333333333332112 5556677889999999999987
Q ss_pred CC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc-cCccccccccccccCC
Q 013210 321 GL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL-GYYETLMSCSGSSTSS 398 (447)
Q Consensus 321 ~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~-G~~~s~~~~~a~~~~~ 398 (447)
+. ....|. .|.++++.+++ ...+.+.|.. .| +.+.. |..+
T Consensus 287 ~~~~~~~~~-------------------~~~~~~~~~~~---~~~l~~~L~~---~g-I~v~~~g~~~------------ 328 (356)
T 1fg7_A 287 PCVEQVFDS-------------------ETNYILARFKA---SSAVFKSLWD---QG-IILRDQNKQP------------ 328 (356)
T ss_dssp TTEEEECCC-------------------SSSEEEEEETT---HHHHHHHHHH---TT-EECEECTTST------------
T ss_pred CCceEECCC-------------------CCeEEEEECCC---HHHHHHHHHH---CC-EEEEECCCCC------------
Confidence 63 222332 45688999872 4567777754 34 34443 4211
Q ss_pred CCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 399 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 399 ~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
|. ++++|||++ . ++.++.+.++|+++
T Consensus 329 ----------~~-~~~iRis~~-~---~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 329 ----------SL-SGCLRITVG-T---REESQRVIDALRAE 354 (356)
T ss_dssp ----------TC-TTEEEEECC-C---HHHHHHHHHHHHTC
T ss_pred ----------CC-CCeEEEEeC-C---HHHHHHHHHHHHhh
Confidence 22 368999999 4 45677777777654
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=251.05 Aligned_cols=279 Identities=16% Similarity=0.182 Sum_probs=208.4
Q ss_pred CchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 98 NPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.+...++++.+|+++|. +.+++|+||++|+++++++++++||+|+++.+.|+++...+. ..|.++.+++.+
T Consensus 66 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~ 140 (367)
T 3euc_A 66 VPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQ-----FAGLEFVGVPLRA 140 (367)
T ss_dssp CCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHH-----TTTCEEEEEECCT
T ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEecCCC
Confidence 34568999999999998 679999999999999999999999999999999999877763 268888888754
Q ss_pred ----CHHHHHHhhccC-CceEEEEEcCCCCCccccC---HHHHHHHHHhc--CCEEEEeCCCCCCCCC-----ccCCCCe
Q 013210 174 ----DHEMVNSAIVQG-RTKVLYFESISNPTLAVAN---IPELSRLAHDK--GVTVVVDNTFSPLVLS-----PARLGAD 238 (447)
Q Consensus 174 ----d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~---l~~I~~la~~~--gi~livD~~~~~~~~~-----~~~~g~d 238 (447)
|+++|++++ ++ ++++|++++|+||||.+.+ +++|+++|++| |+++|+|++|+.+... ....+.+
T Consensus 141 ~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 219 (367)
T 3euc_A 141 DFTLDRGAMLAAM-AEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNL 219 (367)
T ss_dssp TSCCCHHHHHHHH-HHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTE
T ss_pred CCCCCHHHHHHHh-hccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCE
Confidence 899999999 55 8999999999999999975 67788889999 9999999999655322 1233678
Q ss_pred EEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013210 239 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 239 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 318 (447)
+++.|+||+ +++|.++ ||++.++++++.+...... ...+.+.+.++..++...+++..+.+++.++++++.+.|+
T Consensus 220 i~~~s~sK~-~~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 294 (367)
T 3euc_A 220 LVMRTVSKL-GLAGIRL-GYVAGDPQWLEQLDKVRPP---YNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMA 294 (367)
T ss_dssp EEEEECCCT-TSCSCCE-EEEEECHHHHHHHGGGCCS---SCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhh-cccccCc-eeeeeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 8899998 9999999998888655441 2233333444444444433456677788999999999998
Q ss_pred hC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccC
Q 013210 319 KL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 319 ~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
++ +..+ .|. .|.++++.+++ ...+.+.|... | +.++.|..+ .
T Consensus 295 ~~~g~~~-~~~-------------------~~~~~~~~~~~---~~~l~~~l~~~---g-i~v~~~~~~--------~-- 337 (367)
T 3euc_A 295 AHGGVTV-FPS-------------------AANFLLARVPD---AAQTFDRLLAR---K-VLIKNVSKM--------H-- 337 (367)
T ss_dssp TSTTCEE-CCC-------------------SSSEEEEECSC---HHHHHHHHHTT---T-EECEECGGG--------C--
T ss_pred hCCCcEE-CCC-------------------CCeEEEEECCC---HHHHHHHHHHC---C-eEEEECCcc--------C--
Confidence 87 4453 232 45688888872 45677777653 3 455555321 0
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..++.+|||++ . ++.++.+.++|+++
T Consensus 338 -----------~~~~~~iRis~~-~---~~~i~~~~~~l~~~ 364 (367)
T 3euc_A 338 -----------PLLANCLRVTVS-T---PEENAQFLEAFAAS 364 (367)
T ss_dssp -----------GGGTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred -----------CCCCCEEEEecC-C---HHHHHHHHHHHHHH
Confidence 112578999999 3 34455555555543
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=246.38 Aligned_cols=290 Identities=13% Similarity=0.111 Sum_probs=208.6
Q ss_pred CCchHHHHHHHHHHHhCCC--e-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchh--HHHHHHhhcCcccCeeEEEeC
Q 013210 97 FNPTVLNLSRQMAALEGTE--A-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~--~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..+..+++++.+++++|.+ . +++|+||++|+.+++++++++||+|+++.++|++ +...+. . .|.++..++
T Consensus 51 ~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~ 125 (386)
T 2dr1_A 51 YRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVE----S-NGRKAVVLE 125 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHH----H-TTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHH----H-hCCceEEEe
Confidence 3567789999999999976 4 8999999999999999999999999999999998 544442 2 688888887
Q ss_pred C-----CCHHHHHHhhcc-CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC--CCCccCCCCeEEEeC
Q 013210 172 I-----SDHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHS 243 (447)
Q Consensus 172 ~-----~d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~--~~~~~~~g~di~~~S 243 (447)
. .|+++|++++++ +++++|++++++||||.+.|+++|.++|++||+++|+|++|+.. ..+...+++|+++.|
T Consensus 126 ~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s 205 (386)
T 2dr1_A 126 YEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSS 205 (386)
T ss_dssp CCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEE
T ss_pred cCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEe
Confidence 6 389999998843 57999999999999999999999999999999999999999433 234445688999999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHH----------------Hh-hhhhhhcCCC--ccHHHHHHHHccCC---cHHH
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMD----------------LH-QGALMLLGPT--MNPKVAFELSERIP---HLGL 301 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~----------------~~-~~~~~~~g~~--~~~~~a~~~~~~~~---~l~~ 301 (447)
+||++++++. + |+++.++++++.+.. .. ... ..++. ..+.++..++..+. .+..
T Consensus 206 ~sK~~~~~~g-~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~g~~~~ 281 (386)
T 2dr1_A 206 SQKAFGVPPG-L-AIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKES--TPSTPPMPQVFGINVALRIIEKMGGKEK 281 (386)
T ss_dssp TTSTTCCCSS-C-EEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSS--CSSCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccccccCCCc-e-EEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCC--CCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999997643 5 999999988876631 11 101 12221 12222222332221 3556
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013210 302 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs 381 (447)
..+++.++++++.+.|++++.++..|. . +..+.+++|.++.......+.+.|... | +.+.
T Consensus 282 ~~~~~~~~~~~l~~~L~~~g~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~ 341 (386)
T 2dr1_A 282 WLEMYEKRAKMVREGVREIGLDILAEP--G--------------HESPTITAVLTPPGIKGDEVYEAMRKR---G-FELA 341 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBSSCT--T--------------CBCSSEEEEECCTTCCHHHHHHHHHHT---T-EECE
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeCcCc--c--------------ccCCceEEEEcCCCCCHHHHHHHHHHC---C-eEEe
Confidence 778889999999999998865554332 0 014669999987322356677777652 3 4555
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.|.. + ..++.+|||++ ...+++.++.+.++|+++
T Consensus 342 ~~~~------~-----------------~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 375 (386)
T 2dr1_A 342 KGYG------S-----------------VKEKTFRIGHM-GYMKFEDIQEMLDNLREV 375 (386)
T ss_dssp ECCG------G-----------------GTTTEEEEECC-SSCCHHHHHHHHHHHHHH
T ss_pred cCcc------c-----------------cCCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 4421 0 02478999999 755666666665555543
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=249.77 Aligned_cols=285 Identities=17% Similarity=0.148 Sum_probs=206.7
Q ss_pred CCchHHHHHHHHHHHhCC-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 97 FNPTVLNLSRQMAALEGT-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..+..+.+++.+++++|. +.+++|+||++|+..++++++++||+|+++.|.|+++...+. ..|.++..++
T Consensus 80 ~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~ 154 (407)
T 3nra_A 80 DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVE-----FFEGEMVPVQ 154 (407)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHH-----HcCCEEEEee
Confidence 345667788888888886 679999999999999999999999999999999999887763 2577777776
Q ss_pred C-------C----CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------
Q 013210 172 I-------S----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------ 231 (447)
Q Consensus 172 ~-------~----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------ 231 (447)
. + |+++|++++ ++++++|++++|+||||.++| +++|+++|++||+++|+|++|+.+.+.
T Consensus 155 ~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~ 233 (407)
T 3nra_A 155 LDYVSADETRAGLDLTGLEEAF-KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTH 233 (407)
T ss_dssp BCCCSSCCSSCCBCHHHHHHHH-HTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCC
T ss_pred cccccccCcCCCcCHHHHHHHH-hhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCC
Confidence 5 1 899999999 668999999999999999998 899999999999999999999654322
Q ss_pred c-----cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC----CcHHHH
Q 013210 232 P-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGLR 302 (447)
Q Consensus 232 ~-----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~----~~l~~~ 302 (447)
. ...+.++++.|+||.+|++|.|+ ||+++++++++.+...... .....+.....++...+ ..+...
T Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~a~~~~l~~~~~~~~~~ 308 (407)
T 3nra_A 234 LRAEAAVDAENVVTIMGPSKTESLSGYRL-GVAFGSRAIIARMEKLQAI----VSLRAAGYSQAVLRGWFDEAPGWMEDR 308 (407)
T ss_dssp GGGCTTSCGGGEEEEECSSSTTCCGGGCC-EEEEECHHHHHHHHHHHHH----HTSSSCHHHHGGGGGTTCCCTTHHHHH
T ss_pred hhhcCcccCCcEEEEeCcccccCCCeeeE-EEEEcCHHHHHHHHHHHhh----hccCCChHHHHHHHHHHhccchHHHHH
Confidence 1 12356799999999999999998 9999999999888776552 12222222222222222 346677
Q ss_pred HHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccc
Q 013210 303 MKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAV 380 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~v 380 (447)
.+++.++++++.+.|+++ +..+..|. .|.++++.++. ......+.+.|... .| +.+
T Consensus 309 ~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~v 366 (407)
T 3nra_A 309 IARHQAIRDELLHVLRGCEGVFARTPQ-------------------AGSYLFPRLPKLAVAPAEFVKILRLQ--AG-VVV 366 (407)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCBCCCCS-------------------BSSEECCBCCCBSSCHHHHHHHHHHH--HC-EEC
T ss_pred HHHHHHHHHHHHHHHhcCCCceeccCC-------------------eeEEEEEeCCCCCCCHHHHHHHHHHh--CC-EEE
Confidence 788899999999999887 33443222 34577777764 22355666766431 23 455
Q ss_pred cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 381 s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+.|..+. ....+.+|||++ . +++.++.+.++|.+
T Consensus 367 ~~g~~~~---------------------~~~~~~iRis~~-~--~~~~i~~~~~~l~~ 400 (407)
T 3nra_A 367 TPGTEFS---------------------PHTADSVRLNFS-Q--DHEAAVAAARRIVT 400 (407)
T ss_dssp EEGGGTC---------------------TTCTTBEEEECC-S--CHHHHHHHHHHHHH
T ss_pred eCchhhC---------------------CCCCCEEEEEeC-C--CHHHHHHHHHHHHH
Confidence 6553221 012578999999 6 34445544444443
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=248.16 Aligned_cols=284 Identities=17% Similarity=0.170 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|++++ .+.+++|+||++|+++++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~ 144 (391)
T 3h14_A 70 LPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILR-----ALGLVPVDLPT 144 (391)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-----HcCCEEEEeec
Confidence 3678888888763 3569999999999999999999999999999999999987763 26888888776
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccCC-C
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARL-G 236 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~~-g 236 (447)
+ |+++|+++ ++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+. ...+ +
T Consensus 145 ~~~~~~~~d~~~l~~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 220 (391)
T 3h14_A 145 APENRLQPVPADFAGL----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTD 220 (391)
T ss_dssp CGGGTTSCCHHHHTTS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCS
T ss_pred CcccCCCCCHHHHHhc----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCC
Confidence 4 77777654 7899999999999999998 888999999999999999999655432 2222 5
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
.++++.|+||.+|++|.|+ ||++.++++++.+....... ...++.+.+.++..++...+.+....+++.++++++.+.
T Consensus 221 ~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 298 (391)
T 3h14_A 221 ECYVINSFSKYFSMTGWRV-GWMVVPEDQVRVVERIAQNM-FICAPHASQVAALAALDCDAELQANLDVYKANRKLMLER 298 (391)
T ss_dssp SSEEEEESSSTTCCTTSCC-EEEECCGGGHHHHHHHHHHT-TCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEechhccCCcccee-EEEEeCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999998 99999999998887665521 112222333333344443344666777889999999999
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccc
Q 013210 317 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 395 (447)
Q Consensus 317 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~ 395 (447)
|++++.....+. ..|.++++.++. ..+...+.+.|... .| +.++.|..+..
T Consensus 299 l~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~v~~g~~~~~------- 350 (391)
T 3h14_A 299 LPKAGFTRIAPP------------------DGAFYVYADVSDLTDDSRAFAAEILEK--AG-VAVTPGLDFDP------- 350 (391)
T ss_dssp HHHHTCCCBCCC------------------CBTTEEEEECTTTCSCHHHHHHHHHHH--HC-EECEEGGGTCT-------
T ss_pred HHHcCCCcccCC------------------CeeEEEEEecCccCCCHHHHHHHHHHH--CC-EEEcCchhhCC-------
Confidence 988765332221 134578888863 22355666665431 23 56666632210
Q ss_pred cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 396 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 396 ~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..++.+|||++ . +++.++.+.+.|.++
T Consensus 351 -------------~~~~~~iRis~~-~--~~~~i~~~l~~l~~~ 378 (391)
T 3h14_A 351 -------------ERGAGTLRFSYA-R--ATADIEEGLDRLEAF 378 (391)
T ss_dssp -------------TTGGGEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred -------------CCCCCeEEEEec-C--CHHHHHHHHHHHHHH
Confidence 012578999999 6 334455554444443
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=247.76 Aligned_cols=295 Identities=13% Similarity=0.095 Sum_probs=210.4
Q ss_pred CccccCCCCchHHHHHHHHHHHhC----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCe
Q 013210 90 FFIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI 165 (447)
Q Consensus 90 ~~~~~r~~~~~~~~l~~~ia~l~g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~ 165 (447)
.+.|+....+..+.+++.+++++| .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.
T Consensus 62 ~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~ 136 (391)
T 4dq6_A 62 IYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVK-----NNNR 136 (391)
T ss_dssp CCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHH-----HTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHH-----HcCC
Confidence 355666666777888888888887 3569999999999999999999999999999999999987773 2678
Q ss_pred eEEEeCCC---------CHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013210 166 TTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS-- 231 (447)
Q Consensus 166 ~~~~v~~~---------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~-- 231 (447)
++.+++.+ |+++|++++ ++ +++|++++|+||||.+. ++++|+++|++||+++|+|++|+.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~d~~~l~~~l-~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~ 214 (391)
T 4dq6_A 137 ELIISPLQKLENGNYIMDYEDIENKI-KD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH 214 (391)
T ss_dssp EEEECCCEECTTSCEECCHHHHHHHC-TT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred eEEeeeeeecCCCceEeeHHHHHHHh-hc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC
Confidence 88887764 899999999 55 99999999999999995 5889999999999999999999655432
Q ss_pred ----ccCC-----CCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHH
Q 013210 232 ----PARL-----GADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLG 300 (447)
Q Consensus 232 ----~~~~-----g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~ 300 (447)
...+ +.++++.|+||.+|++|.|+ |+++.++ ++++.+...........++.+.+.++..++... +.+.
T Consensus 215 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 293 (391)
T 4dq6_A 215 KHIPMASISKEFEKNTITCMAPTKTFNIAGLQS-SYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLE 293 (391)
T ss_dssp CCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCC-EEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred CccCHHHcCccccCcEEEEEechhhccCcccce-EEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHH
Confidence 1122 34599999999999899998 8888765 888888766542211122333333333333332 2355
Q ss_pred HHHHHHHHHHHHHHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccc
Q 013210 301 LRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGF 377 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~ 377 (447)
...+++.++++++.+.|++ . +..+..|. .+.++++.++. ......+.+.|... +|
T Consensus 294 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~--~g- 351 (391)
T 4dq6_A 294 SFLEYLESNIDFAIKYINENMPKLKVRKPE-------------------GTYLLWVDFSALGLSDEELESILVQK--GK- 351 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSEECCCS-------------------BSSEEEEECGGGCCCHHHHHHHHHHT--TC-
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEecCCC-------------------ccEEEEEEhhhcCCCHHHHHHHHHHh--CC-
Confidence 6677788999999999987 4 34544322 34466788863 12356777777652 24
Q ss_pred ccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 378 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 378 ~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+.++.|..+ . ...++.+|||++ . +++.++.+.++|++
T Consensus 352 i~v~~g~~~--------~-------------~~~~~~iRis~~-~--~~~~i~~~l~~l~~ 388 (391)
T 4dq6_A 352 VALNQGNSF--------G-------------IGGSGYQRINLA-C--PRSMLEEALIRIKN 388 (391)
T ss_dssp EECEEGGGG--------C-------------TTCTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred EEeeCchhh--------C-------------CCCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence 455555221 1 012578999999 5 34445554444443
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=244.12 Aligned_cols=276 Identities=16% Similarity=0.185 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|++++ .+.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++
T Consensus 68 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~- 141 (370)
T 2z61_A 68 ILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIR-----FLGAKPVFCD- 141 (370)
T ss_dssp CHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEEC-
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEeC-
Confidence 4678888888874 2569999999999999999999999999999999999887763 2688888888
Q ss_pred CCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-----CccC----CCCeEEEeC
Q 013210 173 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR----LGADVVVHS 243 (447)
Q Consensus 173 ~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-----~~~~----~g~di~~~S 243 (447)
.|+++|++++ ++++++|++++|+||||.+.|++ |.++|++||+++|+|++|+.+.+ +... .+.|+++.|
T Consensus 142 ~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s 219 (370)
T 2z61_A 142 FTVESLEEAL-SDKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILING 219 (370)
T ss_dssp SSHHHHHHHC-CSSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEE
T ss_pred CCHHHHHHhc-ccCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEec
Confidence 7999999999 67899999999999999999999 99999999999999999965533 2222 268999999
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC-----cHHHHHHHHHHHHHHHHHHHH
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~-----~l~~~~~~~~~~~~~l~~~L~ 318 (447)
+||++|++|.|+ ||+++++++++.+...... ...+.+......+...++ ++....+++.++++++.+.|+
T Consensus 220 ~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 294 (370)
T 2z61_A 220 FSKLYAMTGWRI-GYVISNDEIIEAILKLQQN----LFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVK 294 (370)
T ss_dssp STTTTTCGGGCC-EEEECCHHHHHHHHHHHHH----HTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhccCCccceE-EEEEECHHHHHHHHHHHhh----cccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999899998 9999999998888776552 111222222222223333 234456678889999999998
Q ss_pred hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccCccccccccccccC
Q 013210 319 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 319 ~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~-~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
+++.++..|. .|.++++.++. +...+.+.|. .. | +.+..|..+..
T Consensus 295 ~~g~~~~~~~-------------------~~~~~~~~~~~--~~~~~~~~l~~~~---g-i~v~~g~~f~~--------- 340 (370)
T 2z61_A 295 DFGWEVNNPI-------------------GAYYVFPNIGE--DGREFAYKLLKEK---F-VALTPGIGFGS--------- 340 (370)
T ss_dssp HTTCBCCCCC-------------------BTTEECCBCSS--CHHHHHHHHHHHH---C-EECEEGGGGCG---------
T ss_pred HcCCeecCCC-------------------cceEEEEecCC--CHHHHHHHHHHhC---C-EEEeCchhhCC---------
Confidence 8765443221 34577778874 2456666664 32 3 45555522100
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
..++.+|||++ . +++.++.+.+.|.+
T Consensus 341 ------------~~~~~~Ri~~~-~--~~~~i~~~~~~l~~ 366 (370)
T 2z61_A 341 ------------KGKNYIRISYA-N--SYENIKEGLERIKE 366 (370)
T ss_dssp ------------GGSSBEEEECC-S--CHHHHHHHHHHHHH
T ss_pred ------------CCCCEEEEEEe-C--CHHHHHHHHHHHHH
Confidence 02478999999 4 34445555444443
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-29 Score=245.32 Aligned_cols=242 Identities=18% Similarity=0.189 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 101 VLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 101 ~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
..++++.+|++++ .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.+
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~ 139 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPK-----SLGAEVDLWQIEEENG 139 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHH-----HTTCEEEEEEEEGGGT
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEeccccCC
Confidence 4689999999863 3679999999999999999999999999999999999887763 257777777653
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-----CCCCeEEEe
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----RLGADVVVH 242 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-----~~g~di~~~ 242 (447)
|+++|++++ ++++++|++++|+||+|.+.| +++|.++|++||+++|+|++|+.+...+. ..+.++++.
T Consensus 140 ~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~ 218 (375)
T 3op7_A 140 WLPDLEKLRQLI-RPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVN 218 (375)
T ss_dssp TEECHHHHHHHC-CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEE
T ss_pred CCCCHHHHHHhh-ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEe
Confidence 899999999 788999999999999999999 99999999999999999999966544311 136789999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc-HHHHHHHHHHHHHHHHHHHHhCC
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~-l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
|+||.+|++|.|+ |++++++++++.+...+... ...++.+.+.++...+...+. +....+++.++++.+.+.|++.+
T Consensus 219 s~sK~~~~~G~r~-G~v~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 296 (375)
T 3op7_A 219 SLSKTYSLPGIRI-GWVAANHQVTDILRDYRDYT-MICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEEEP 296 (375)
T ss_dssp ESSSSSSCGGGCC-EEEECCHHHHHHHTTTGGGT-TSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred EChhhcCCcccce-EEEEeCHHHHHHHHHHHhhh-ccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999899998 99999999998887655421 122223333333333333222 33344556888899999998864
Q ss_pred C-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013210 322 L-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 369 (447)
Q Consensus 322 ~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l 369 (447)
. .+..|. .|.++++.++.......+...+
T Consensus 297 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l 326 (375)
T 3op7_A 297 LVSYIRPA-------------------VVSTSFVKIAVDMPMEDFCLQL 326 (375)
T ss_dssp TEEECCCS-------------------SSSCEEEEECCSSCHHHHHHHH
T ss_pred CceEecCC-------------------CeEEEeEEcCCCCCHHHHHHHH
Confidence 4 443332 2346666666332345566665
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=250.07 Aligned_cols=278 Identities=15% Similarity=0.191 Sum_probs=195.6
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCC-CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.++++.+++++ | .+.+++|+||++|+.+++++++++| |+|+++.|.|+++...+. ..|.++..++.
T Consensus 79 ~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~ 153 (398)
T 3ele_A 79 VETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVN-----AAGARLVEVPA 153 (398)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEec
Confidence 56777777765 3 3569999999999999999999999 999999999999887763 26888888876
Q ss_pred C------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHh------cCCEEEEeCCCCCCCCCc-----
Q 013210 173 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHD------KGVTVVVDNTFSPLVLSP----- 232 (447)
Q Consensus 173 ~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~------~gi~livD~~~~~~~~~~----- 232 (447)
+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|++ ||+++|+|++|+.+.+..
T Consensus 154 ~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~ 232 (398)
T 3ele_A 154 DTEHFQIDFDALEERI-NAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPF 232 (398)
T ss_dssp CTTTSSCCHHHHHHTC-CTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCC
T ss_pred CCcCCcCCHHHHHHHh-CcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCC
Confidence 5 899999999 778999999999999999998 6677799998 999999999996554321
Q ss_pred --cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHH------HHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 233 --ARLGADVVVHSISKFISGGADIIAGAVCGPANLV------NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 233 --~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~------~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
...+.++++.|+||.+|++|.|+ ||++++++++ +.+...... ......+.....++...++.. ...+
T Consensus 233 ~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~-~~~~ 307 (398)
T 3ele_A 233 VTKYYDNTLVCYSYSKSLSLPGERI-GYVLVPDEVYDKAELYAAVCGAGRA---LGYVCAPSLFQKMIVKCQGAT-GDIN 307 (398)
T ss_dssp GGGTCSSEEEEEESTTTSSCTTTCC-EEEECCTTSTTHHHHHHHHHHHHHH---TTCCCSCHHHHHHHTTCTTCC-CCHH
T ss_pred hHhhcCCeEEEEehhhcCCCcccee-EEEEEcchhhhHHHHHHHHHHHhhh---ccccCCCHHHHHHHHHHhcCH-HHHH
Confidence 12367899999999999999999 9998887643 333322221 111222222222222223221 1356
Q ss_pred HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccC
Q 013210 305 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
++.++++++.+.|++.+..+..|. .|.++++.++.. ....+.+.|... | +.+..|.
T Consensus 308 ~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~-~~~~~~~~l~~~---g-i~v~~g~ 363 (398)
T 3ele_A 308 AYKENRDLLYEGLTRIGYHCFKPD-------------------GAFYMFVKALED-DSNAFCEKAKEE---D-VLIVAAD 363 (398)
T ss_dssp HHHHHHHHHHHHHHHHTCCEECCS-------------------BSSEEEEECSSS-CHHHHHHHHHTT---T-EECEESG
T ss_pred HHHHHHHHHHHHHHHcCCeecCCC-------------------eeEEEEEEcCCC-CHHHHHHHHHHC---C-EEEeCcc
Confidence 778889999999988766655432 344689998743 255677777653 3 4555552
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHH
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSR 438 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~ 438 (447)
.+ + .++.+|||++ . +++++.++.|.+++++
T Consensus 364 ~~----------------------~-~~~~iRis~~-~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 364 GF----------------------G-CPGWVRISYC-VDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp GG----------------------T-CTTEEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred cc----------------------C-CCCeEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence 21 1 1478999999 5 2233344444444443
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-30 Score=250.70 Aligned_cols=295 Identities=15% Similarity=0.131 Sum_probs=211.0
Q ss_pred ccccCCCCchHHHHHHH-HHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 91 FIYSRHFNPTVLNLSRQ-MAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~-ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
+.+++...+...++++. +++++|.+.+++|+||++|+.+++++++++||+|+++.++|+++...+. ..|.++.+
T Consensus 45 ~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~ 119 (371)
T 2e7j_A 45 GRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE-----RAGLNIAL 119 (371)
T ss_dssp --------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----HTTCEEEE
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHH-----HcCCeEEE
Confidence 44555667788999999 9999998889999999999999999999999999999999999987762 26888888
Q ss_pred eC--CC-----CHHHHHHhhcc----CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC--CCccCCC
Q 013210 170 VD--IS-----DHEMVNSAIVQ----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLG 236 (447)
Q Consensus 170 v~--~~-----d~~~l~~~i~~----~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~--~~~~~~g 236 (447)
++ .+ |+++|++++++ +++++|++++++||+|.+.|+++|.++|++||+++|+|++|+... .+...++
T Consensus 120 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~ 199 (371)
T 2e7j_A 120 VPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIG 199 (371)
T ss_dssp ECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHT
T ss_pred eecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcC
Confidence 88 65 89999999832 689999999999999999999999999999999999999994432 3444457
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHH-HHHHhhhhhhh----cCC-CccHHHHHHHHccCCcHH-HHHHHH--H
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNS-MMDLHQGALML----LGP-TMNPKVAFELSERIPHLG-LRMKEH--C 307 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~-l~~~~~~~~~~----~g~-~~~~~~a~~~~~~~~~l~-~~~~~~--~ 307 (447)
+|+++.|+||++++++ ++ |+++.++++++. +.....+.... .++ ......+.. ..++.+. ...+++ .
T Consensus 200 ~di~~~s~sK~~~~~~-~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~l~~~~~~~~~~~~~~ 275 (371)
T 2e7j_A 200 ADFIVGSGHKSMAASG-PI-GVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLM--ASFPHVRERIKRWDEEV 275 (371)
T ss_dssp CSEEEEEHHHHSSCCS-SC-EEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHH--HHHHHHHHHGGGHHHHH
T ss_pred CCEEEecCCcCCCCCC-Cc-EEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 8999999999988665 66 999998887766 54333211110 222 222222221 1112222 344566 7
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccc
Q 013210 308 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 308 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++++++.+.|++.+.++..|.. +.|+++++.++ ....+.+.|.. .| +.+...
T Consensus 276 ~~~~~l~~~L~~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~l~~---~g-i~~~~~---- 327 (371)
T 2e7j_A 276 EKARRFAAEMEKLGIKQLGDNP-----------------HNHDLMFFHAE---VLYEISKKAKG---GR-FFLYRE---- 327 (371)
T ss_dssp HHHHHHHHHHHHTTCEEESSSS-----------------CCSSEEEEECH---HHHHHHHHSSS---GG-GHHHHH----
T ss_pred HHHHHHHHHHHHcCcEEecCCC-----------------ccCceEEEECC---CHHHHHHHHHH---CC-EEEEec----
Confidence 8889999999888666654320 13568999986 45678777775 23 222210
Q ss_pred cccccccccCCCCCHHHHHhc---CCCCCeEE-EEeCCCC-CHHHHHHHHHHHHHHhh
Q 013210 388 LMSCSGSSTSSELNAEEKALA---GISAGLVR-MSVGYLG-TLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~---g~~~~~iR-iS~g~~~-~~~~~i~~l~~al~~~~ 440 (447)
.... |..++.+| ||++ .. .+++.++.+.++|+++.
T Consensus 328 -----------------~~~~~~~g~~~~~iRii~~~-~~~~~~~~i~~~~~~l~~~~ 367 (371)
T 2e7j_A 328 -----------------LKSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEII 367 (371)
T ss_dssp -----------------HHHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHH
T ss_pred -----------------cccccccCCCCCceEEEEee-ccCCCHHHHHHHHHHHHHHH
Confidence 0011 33468899 9999 77 77888888888877654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-28 Score=236.13 Aligned_cols=275 Identities=17% Similarity=0.178 Sum_probs=204.2
Q ss_pred CCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 97 FNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.++...++++.+|+++|++ .+++|+|+++++++++..+ +||+|+++.|.|+++...+ +..|.++..++.+
T Consensus 49 ~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~-----~~~g~~~~~v~~~~ 121 (337)
T 3p1t_A 49 PFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARI-----AVSGLRHFEIGLTD 121 (337)
T ss_dssp CTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHHHH-----TTSCCEEEEECBCT
T ss_pred CCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHH-----HHcCCEEEEecCCC
Confidence 4577889999999999974 5999999999999999887 8999999999999988766 2368888888754
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC----ccCCCCeEEEeCCC
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS----PARLGADVVVHSIS 245 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~----~~~~g~di~~~S~s 245 (447)
|+++|+++ .++++|++++|+||||.++|++++.++|+++++ +|+|++|..+... ....+.++++.|+|
T Consensus 122 ~~~~d~~~l~~~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~s 197 (337)
T 3p1t_A 122 DLLLDPNDLAQV---SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFS 197 (337)
T ss_dssp TSSBCHHHHTTC---CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESS
T ss_pred CCCCCHHHHHhh---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCc
Confidence 78888765 368999999999999999999999999999997 5669999644322 12236789999999
Q ss_pred ccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013210 246 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL 325 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~ 325 (447)
|.+|++|.|+ ||++.++++++.+..... ....+.+.+.++..++.....+....+++.++++++.+.|++++..+.
T Consensus 198 K~~g~~G~r~-G~~~~~~~~~~~l~~~~~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 273 (337)
T 3p1t_A 198 KSYGLAGLRL-GALFGPSELIAAMKRKQW---FCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLGYRVA 273 (337)
T ss_dssp STTCCTTTCC-EEEECCHHHHHHHHTTSC---TTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred hhccCcchhe-EEEEeCHHHHHHHHhhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCcCEEC
Confidence 9999999998 999999999888865433 122233333333344443334556777788888999999998865543
Q ss_pred CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHH
Q 013210 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 405 (447)
Q Consensus 326 ~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~ 405 (447)
.| .|+++++.+++.+ .+.+.|... | +.++.|..+
T Consensus 274 ~~--------------------~~~~~~~~~~~~~---~~~~~l~~~---g-i~v~~g~~~------------------- 307 (337)
T 3p1t_A 274 SS--------------------EANFVLVENAAGE---RTLRFLRER---G-IQVKDAGQF------------------- 307 (337)
T ss_dssp CC--------------------SSSEEEEECTTTH---HHHHHHHHT---T-EECEEGGGG-------------------
T ss_pred CC--------------------CCeEEEEEcCCHH---HHHHHHHHC---C-eEEEECccC-------------------
Confidence 22 3558888876533 344445442 3 566656321
Q ss_pred HhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 406 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 406 ~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+. ++.+|||++ . ++.++.|.++|+++.
T Consensus 308 ---~~-~~~iRis~~-~---~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 308 ---GL-HHHIRISIG-R---EEDNDRLLAALAEYS 334 (337)
T ss_dssp ---TC-CSEEEEECC-C---HHHHHHHHHHHHHHT
T ss_pred ---CC-CCeEEEecC-C---HHHHHHHHHHHHHHh
Confidence 11 478999999 3 566777777777664
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-29 Score=249.62 Aligned_cols=243 Identities=17% Similarity=0.158 Sum_probs=182.5
Q ss_pred hHHHHHHHHHHHhC-------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 100 TVLNLSRQMAALEG-------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 100 ~~~~l~~~ia~l~g-------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
...++++.+|++++ .+.+++|+||++|+.++++.++++||+|+++.|+|+++...+. ..|.++..++.
T Consensus 97 g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~ 171 (427)
T 3dyd_A 97 GFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAE-----SMGIEVKLYNL 171 (427)
T ss_dssp CCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEE
T ss_pred CcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEec
Confidence 34789999999998 3569999999999999999999999999999999999887763 25777776654
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccCCC
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARLG 236 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~~g 236 (447)
+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+. ...++
T Consensus 172 ~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~ 250 (427)
T 3dyd_A 172 LPEKSWEIDLKQLEYLI-DEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS 250 (427)
T ss_dssp EGGGTTEECHHHHHSSC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC
T ss_pred ccccCCCCCHHHHHHHh-ccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC
Confidence 2 899999999 778999999999999999999 999999999999999999999665432 11222
Q ss_pred ---CeEEEeCCCccccCCCCeeEEEEEcC-------hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc--CCcHHHHHH
Q 013210 237 ---ADVVVHSISKFISGGADIIAGAVCGP-------ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMK 304 (447)
Q Consensus 237 ---~di~~~S~sK~~g~~g~~igG~l~~~-------~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~ 304 (447)
..+++.|+||.++++|.|+ ||++++ +++++.+...... ...++.+.+.++..++.. .+.+..+.+
T Consensus 251 ~~~~vi~~~S~sK~~~~~G~ri-G~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~ 327 (427)
T 3dyd_A 251 TDVPILSCGGLAKRWLVPGWRL-GWILIHDRRDIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLS 327 (427)
T ss_dssp SSCCEEEEEESTTTSSCGGGCC-EEEEEECSTTSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCcEEEEeeccccCCCcCcce-EEEEecCcchhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3478899999999999999 887765 4677666655431 133344444444444442 234566777
Q ss_pred HHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHhh
Q 013210 305 EHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYLQ 370 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~l~~~l~ 370 (447)
++.++++++.+.|++++ ..+..|. .|.++++.++.. .....+...|.
T Consensus 328 ~~~~~~~~l~~~L~~~~g~~~~~p~-------------------~g~~~~~~l~~~~~~~~~~~~~~~~~l~ 380 (427)
T 3dyd_A 328 FLKSNADLCYGALAAIPGLRPVRPS-------------------GAMYLMVGIEMEHFPEFENDVEFTERLV 380 (427)
T ss_dssp HHHHHHHHHHHHHHHSTTEEEECCS-------------------BTTEEEEEECGGGCTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceecCCC-------------------eeEEEEEecCHhhcCCCCCHHHHHHHHH
Confidence 88999999999999873 3554443 455778787611 12345666653
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=250.16 Aligned_cols=289 Identities=17% Similarity=0.221 Sum_probs=206.4
Q ss_pred HHHHHHHHHHhC------C---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALEG------T---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~g------~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.++++.++++++ . +.+++|+||++|+++++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 70 ~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~ 144 (422)
T 3fvs_A 70 PPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTM-----MAGGRPVFVSL 144 (422)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHH-----HcCCEEEEEec
Confidence 567777777765 2 469999999999999999999999999999999999887763 25767666653
Q ss_pred -----------------CCHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013210 173 -----------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 173 -----------------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~~ 232 (447)
.|+++|++++ ++++++|++++|+||||.+. ++++|+++|++||+++|+|++|+.+.+..
T Consensus 145 ~~~~~~~G~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~ 223 (422)
T 3fvs_A 145 KPGPIQNGELGSSSNWQLDPMELAGKF-TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG 223 (422)
T ss_dssp BCCCCCSSSCCBGGGSBCCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred ccccccccccccccCCCCCHHHHHhhc-CCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC
Confidence 2899999999 77899999999999999999 58899999999999999999996554321
Q ss_pred ------cC----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-------
Q 013210 233 ------AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER------- 295 (447)
Q Consensus 233 ------~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~------- 295 (447)
.. .+.++++.|+||.+|++|.|+ ||+++++++++.+....... ...++.+.+.++..++..
T Consensus 224 ~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~ 301 (422)
T 3fvs_A 224 HQHISIASLPGMWERTLTIGSAGKTFSATGWKV-GWVLGPDHIMKHLRTVHQNS-VFHCPTQSQAAVAESFEREQLLFRQ 301 (422)
T ss_dssp CCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC-EEEECCHHHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCChhhcccccCcEEEEecchhccCCccceE-EEEEeCHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHhhccccccc
Confidence 11 256799999999999999998 99999999988887655421 122333333344444432
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH-------------
Q 013210 296 -IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK------------- 361 (447)
Q Consensus 296 -~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~------------- 361 (447)
..++....+++.++++++.+.|++++..+..|. .|.++++.+.....
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (422)
T 3fvs_A 302 PSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQ-------------------GSYFLITDISDFKRKMPDLPGAVDEPY 362 (422)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCS-------------------BSSEEEEECHHHHHHCCCCCCCTTCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC-------------------eeeEEEEechhhccccccccccccccc
Confidence 344666778889999999999998877766553 45688888753210
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...+...+.. ..| +.++.|+.+..- .. -....+.+|||++ . +++.++.+.+.|+++
T Consensus 363 ~~~~~~~ll~--~~g-v~v~~g~~f~~~------------~~----~~~~~~~iRis~~-~--~~e~i~~~l~~l~~~ 418 (422)
T 3fvs_A 363 DRRFVKWMIK--NKG-LVAIPVSIFYSV------------PH----QKHFDHYIRFCFV-K--DEATLQAMDEKLRKW 418 (422)
T ss_dssp HHHHHHHHHH--HHC-EECEEGGGGSCH------------HH----HTTSCSEEEEECC-C--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcC-EEEeCcHHhcCC------------cC----CCCCCCeEEEEec-C--CHHHHHHHHHHHHHH
Confidence 2345554332 123 566666332110 00 0123589999999 6 455555555555443
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=242.70 Aligned_cols=282 Identities=17% Similarity=0.179 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----- 173 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----- 173 (447)
..++++.++++++.+ .+++|+||++|+.+++++++++||+|+++.++|+++...+. ..|.++..++.+
T Consensus 63 ~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~ 137 (381)
T 1v2d_A 63 LPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF-----LAGAKARLVRLDLTPEG 137 (381)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEEETTE
T ss_pred CHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEeCCCCCcc
Confidence 478999999999874 69999999999999999999999999999999999887663 257777777653
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc--CCCCeEE
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA--RLGADVV 240 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~--~~g~di~ 240 (447)
|+++|++++ ++++++|++++|+||||.+.| +++|.++|++||+++|+|++|+.+.+ +.. ..++|++
T Consensus 138 ~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~ 216 (381)
T 1v2d_A 138 FRLDLSALEKAL-TPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFT 216 (381)
T ss_dssp EECCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEE
T ss_pred CCcCHHHHHHhc-CcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEE
Confidence 899999999 778999999999999999986 88999999999999999999965432 122 2478999
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc---CCcHHHHHHHHHHHHHHHHHHH
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER---IPHLGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~---~~~l~~~~~~~~~~~~~l~~~L 317 (447)
+.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++.. .+++....+++.++++++.+.|
T Consensus 217 ~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L 294 (381)
T 1v2d_A 217 VGSAGKRLEATGYRV-GWIVGPKEFMPRLAGMRQWT-SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGL 294 (381)
T ss_dssp EEEHHHHTTCGGGCC-EEEECCTTTHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EeechhhcCCcccce-EEEEeCHHHHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999899998 99999999888887654411 123333333333334432 3446667778899999999999
Q ss_pred HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccC
Q 013210 318 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 318 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
++.+.++..|. .|.++++.++..+ +...+.. .| +.+..|..+ ...
T Consensus 295 ~~~g~~~~~~~-------------------~~~~~~~~~~~~~----~~~~l~~---~g-i~v~~g~~~--------~~~ 339 (381)
T 1v2d_A 295 RAMGLRVYVPE-------------------GTYFLMAELPGWD----AFRLVEE---AR-VALIPASAF--------YLE 339 (381)
T ss_dssp HHTTCCEECCS-------------------BSSEEEEECTTCC----HHHHHHH---TC-EECEEGGGG--------CSS
T ss_pred HHCCCEecCCC-------------------cceEEEEecChHh----HHHHHHh---CC-EEEecchHh--------CCC
Confidence 98766655332 3458888887432 3333443 23 454444221 100
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...++.+|||++ . +++.++.+.+.|.++
T Consensus 340 -----------~~~~~~iRi~~~-~--~~~~i~~~~~~l~~~ 367 (381)
T 1v2d_A 340 -----------DPPKDLFRFAFC-K--TEEELHLALERLGRV 367 (381)
T ss_dssp -----------SCCTTEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred -----------CCCCCEEEEEeC-C--CHHHHHHHHHHHHHH
Confidence 013578999999 6 444555555555443
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=243.34 Aligned_cols=277 Identities=18% Similarity=0.198 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHh----CC----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----GT----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g~----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|+++ |. +.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++.
T Consensus 80 ~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~ 154 (389)
T 1o4s_A 80 IYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQII-----LAGGTVNVVET 154 (389)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEec
Confidence 467888888887 53 469999999999999999999999999999999999887763 25777777765
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccC---
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR--- 234 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~--- 234 (447)
+ |+++|++++ ++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+. ...
T Consensus 155 ~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~ 233 (389)
T 1o4s_A 155 FMSKNFQPSLEEVEGLL-VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE 233 (389)
T ss_dssp CGGGTTCCCHHHHHHTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS
T ss_pred CCccCCCCCHHHHHHhc-ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCC
Confidence 3 789999999 678999999999999999987 899999999999999999999655432 111
Q ss_pred -CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013210 235 -LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 313 (447)
Q Consensus 235 -~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l 313 (447)
.++|+++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++... +....+++.++++++
T Consensus 234 ~~~~~i~~~s~sK~~~~~G~r~-G~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~l 309 (389)
T 1o4s_A 234 GFDRIVYINGFSKSHSMTGWRV-GYLISSEKVATAVSKIQSHT-TSCINTVAQYAALKALEVD--NSYMVQTFKERKNFV 309 (389)
T ss_dssp SSTTEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHHH-TCSCCHHHHHHHHHHTTCC--CHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeechhhcCCcccce-EEEEeCHHHHHHHHHHhhhc-ccCCCHHHHHHHHHHHhcc--HHHHHHHHHHHHHHH
Confidence 368999999999999899998 99999999988887665421 1222223333333333322 555677788999999
Q ss_pred HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccCcccccccc
Q 013210 314 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSCS 392 (447)
Q Consensus 314 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~-~~~~~g~~~vs~G~~~s~~~~~ 392 (447)
.+.|++.+.++..|. .|.++++.++ .+...+.+.|. .. | +.+..|..+
T Consensus 310 ~~~L~~~g~~~~~~~-------------------~~~~~~~~~~--~~~~~l~~~l~~~~---g-i~v~~g~~f------ 358 (389)
T 1o4s_A 310 VERLKKMGVKFVEPE-------------------GAFYLFFKVR--GDDVKFCERLLEEK---K-VALVPGSAF------ 358 (389)
T ss_dssp HHHHHHTTCCCCCCS-------------------BSSEEEEECS--SCHHHHHHHHHHHH---C-EECEEGGGG------
T ss_pred HHHHHhcCCeeecCC-------------------cceEEEEeCC--CCHHHHHHHHHHHC---C-EEEeCchhc------
Confidence 999988755443221 3457788885 22455666664 32 3 444444211
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 393 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 393 a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+. ++.+|||++ . +++.++.+.+.|.+
T Consensus 359 ----------------~~-~~~~Ris~~-~--~~~~l~~~l~~l~~ 384 (389)
T 1o4s_A 359 ----------------LK-PGFVRLSFA-T--SIERLTEALDRIED 384 (389)
T ss_dssp ----------------TC-TTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred ----------------CC-CCeEEEEEe-C--CHHHHHHHHHHHHH
Confidence 11 368999999 5 34445444444443
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=245.01 Aligned_cols=216 Identities=18% Similarity=0.250 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+++++ | .+.+++|+||++|+.+++++++++||+|+++.++|+++...+. ..|.++..++.
T Consensus 69 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~ 143 (388)
T 1j32_A 69 EPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK-----LAEGTPVILPT 143 (388)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCEEEEecC
Confidence 356777777776 3 3569999999999999999999999999999999999887763 25778888775
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC--
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-- 234 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~-- 234 (447)
+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+. ...
T Consensus 144 ~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 222 (388)
T 1j32_A 144 TVETQFKVSPEQIRQAI-TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAAS 222 (388)
T ss_dssp CGGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred CcccCCCCCHHHHHHhc-CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcc
Confidence 3 789999999 678999999999999999975 889999999999999999999665432 111
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 310 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 310 (447)
.++|+++.|+||++|++|.|+ |++++++++++.+....... ....+.+.+.++...+... +++....+++.+++
T Consensus 223 ~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 300 (388)
T 1j32_A 223 PEAYERSVVCSGFAKTYAMTGWRV-GFLAGPVPLVKAATKIQGHS-TSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERR 300 (388)
T ss_dssp HHHHHTEEEEEESTTTTTCTTTCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEeechhccCCcccce-EEEEeCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 357999999999999899998 99999999988887655421 1222223333333344432 33566777888999
Q ss_pred HHHHHHHHhC-CCee
Q 013210 311 LIFARRMKKL-GLKV 324 (447)
Q Consensus 311 ~~l~~~L~~~-~~~v 324 (447)
+++.+.|++. +.++
T Consensus 301 ~~l~~~L~~~~g~~~ 315 (388)
T 1j32_A 301 RYMLDALNAMPGLEC 315 (388)
T ss_dssp HHHHHHHHTCTTCBC
T ss_pred HHHHHHHhhCCCCcc
Confidence 9999999887 4444
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-28 Score=244.15 Aligned_cols=311 Identities=15% Similarity=0.143 Sum_probs=221.5
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHH
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHA 153 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~ 153 (447)
+.+.+.+.. ++.....+.+.....+..+++++.+++++|.+..+++++|++|+..++++++++||.|+++.+.|+++..
T Consensus 80 ~a~~~~l~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~ 158 (409)
T 3kki_A 80 ARLAKSLLE-EQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWE 158 (409)
T ss_dssp HHHHHHHHS-CCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHH
T ss_pred HHHHHHHHH-cCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHH
Confidence 555555543 3322222222222234456899999999999999999999999999999999999999999999999887
Q ss_pred HHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc-
Q 013210 154 LLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP- 232 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~- 232 (447)
.+. ..|.++..++..|+++|++++.+.++++|++++|+||||.+.|+++|.++|++||+++|+|++|+...+.+
T Consensus 159 ~~~-----~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~ 233 (409)
T 3kki_A 159 GAR-----YANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPN 233 (409)
T ss_dssp HHH-----HTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGG
T ss_pred HHH-----HcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCC
Confidence 763 25788888888899999999944468999999999999999999999999999999999999995532211
Q ss_pred -------cC--CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHH---HHHccCCcHH
Q 013210 233 -------AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF---ELSERIPHLG 300 (447)
Q Consensus 233 -------~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~---~~~~~~~~l~ 300 (447)
.. .++|+++.|+||.++++ ||++++++++++.+........ .+....+..+. .++..++...
T Consensus 234 g~~~~~~~~~~~~~di~~~s~sK~~~~~----gg~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~aa~~aal~~~~~~~ 307 (409)
T 3kki_A 234 GAGLLAELGLTREVHFMTASLAKTFAYR----AGAIWCNNEVNRCVPFISYPAI--FSSTLLPYEAAGLETTLEIIESAD 307 (409)
T ss_dssp GCCHHHHHTCGGGCSEEEEESSSTTCSS----CEEEEESSSGGGTHHHHCHHHH--HSBCCCHHHHHHHHHHHHHHHHCH
T ss_pred CCcchhhcCCCCCCCEEEeecchhhCCC----ceEEEECHHHHHHHHHhCcCcc--ccCCCcHHHHHHHHHHHHHHhcCH
Confidence 11 25789999999999966 3999999888877765433221 22223332222 2222222224
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013210 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 380 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~v 380 (447)
...+++.++++++.+.|++.+..+. +.|.++++.++.......+.+.|... | +.+
T Consensus 308 ~~~~~~~~~~~~l~~~L~~~g~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~L~~~---G-v~v 362 (409)
T 3kki_A 308 NRRQHLDRMARKLRIGLSQLGLTIR---------------------SESQIIGLETGDERNTEKVRDYLESN---G-VFG 362 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCC---------------------CSSSEEEEEEESHHHHHHHHHHHHHT---T-EEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccC---------------------CCCCEEEEEeCCHHHHHHHHHHHHHC---C-ceE
Confidence 5666788999999999998765433 13558999998766667788887752 3 333
Q ss_pred cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 381 s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
+.+. .+.. ....+.|||+++ ...+++.++.+.++|+++-+.
T Consensus 363 ~~~~------~~~~--------------~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 363 SVFC------RPAT--------------SKNKNIIRLSLN-SDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp EEEC------TTSS--------------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred eeeC------CCCc--------------CCCCcEEEEEcc-CCCCHHHHHHHHHHHHHHHhc
Confidence 2221 1110 113578999999 877888888888887766443
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=248.14 Aligned_cols=287 Identities=16% Similarity=0.176 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHh----CC---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 101 VLNLSRQMAALE----GT---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 101 ~~~l~~~ia~l~----g~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
..++++.||+++ |. +.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++.+
T Consensus 120 ~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~ 194 (448)
T 3aow_A 120 FTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFN-----FYEPQYIQIPLD 194 (448)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEE
T ss_pred cHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEeccC
Confidence 467888888888 75 679999999999999999999999999999999999988773 257777777653
Q ss_pred ----CHHHHHHhhc----c-CCceEEE-EEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC
Q 013210 174 ----DHEMVNSAIV----Q-GRTKVLY-FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR 234 (447)
Q Consensus 174 ----d~~~l~~~i~----~-~~t~lV~-i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~ 234 (447)
|+++|+++++ . .++++|+ +++++||||.+.+ +++|.++|++||+++|+|++|+.+.+. ...
T Consensus 195 ~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~ 274 (448)
T 3aow_A 195 DEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKA 274 (448)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGG
T ss_pred CCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHh
Confidence 8999999983 2 2789985 5899999999987 568999999999999999999655432 112
Q ss_pred C---CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC---CcHHHHHHHHHH
Q 013210 235 L---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCH 308 (447)
Q Consensus 235 ~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~~~~~~~~ 308 (447)
+ +.++++.|+||+++ +|.|+ ||+++++++++.+....... ....+.+.+.++..++... +++....+++.+
T Consensus 275 ~~~~~~vi~~~S~SK~~~-~Glri-G~v~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~ 351 (448)
T 3aow_A 275 LDNEGRVIYLGTFSKILA-PGFRI-GWMVGDPGIIRKMEIAKQST-DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKP 351 (448)
T ss_dssp GCTTSCEEEEEESTTTTC-GGGCC-EEEEECHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEccchhhcc-ccccE-EEEEeCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2 57899999999999 89998 99999999998887655422 1233344444444444432 234455666788
Q ss_pred HHHHHHHHHHhC---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCc
Q 013210 309 RALIFARRMKKL---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 385 (447)
Q Consensus 309 ~~~~l~~~L~~~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~ 385 (447)
+++.+.+.|++. +..+..|. .|.++++.++...+...+.+.|... | +.+..|..
T Consensus 352 ~~~~l~~~L~~~~~~g~~~~~p~-------------------~g~~~~v~~~~~~~~~~l~~~l~~~---g-V~v~pg~~ 408 (448)
T 3aow_A 352 RRDAMLEALEEFMPEGVKWTKPE-------------------GGMFIWVTLPDGIDSKKMLERAIKK---G-VAYVPGEA 408 (448)
T ss_dssp HHHHHHHHHHHHCCTTCEECCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHT---T-EECEEGGG
T ss_pred HHHHHHHHHHHhCCCCeEEeCCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---C-cEEEcchh
Confidence 999999999874 34544332 4668999997422345677777652 3 45555522
Q ss_pred cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHH
Q 013210 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSR 438 (447)
Q Consensus 386 ~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~ 438 (447)
+ .. .+..++.+|||++ .. ++++.++.|.+++++
T Consensus 409 f--------~~-----------~~~~~~~iRls~~-~~~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 409 F--------YA-----------HRDVKNTMRLNFT-YVDEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp G--------ST-----------TCCCCSEEEEECS-SSCTHHHHHHHHHHHHHHHH
T ss_pred h--------cC-----------CCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHHH
Confidence 1 00 0112578999999 53 344445555555544
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=244.72 Aligned_cols=290 Identities=12% Similarity=0.117 Sum_probs=207.0
Q ss_pred CchHHHHHHHHHHHhCCCe----EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 98 NPTVLNLSRQMAALEGTEA----AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~----~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.+..+++++.+++++|.+. +++|+||++|+. ++.+++++||+|+++.+.|++.. +...... .|.++.+++.+
T Consensus 34 ~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~-~g~~~~~v~~~ 109 (384)
T 3zrp_A 34 VEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDR--WEQIFKR-YPVNVKVLRPS 109 (384)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHH--HHHHHTT-SSCEEEEECCS
T ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHH--HHHHHHH-cCCcEEEecCC
Confidence 4567899999999999765 999999999999 99999999999999999997632 2122233 68899988875
Q ss_pred -----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCc
Q 013210 174 -----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISK 246 (447)
Q Consensus 174 -----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK 246 (447)
|+++|++++.+.++++|++++++||+|.+.|+++|.++|++||+++|+|++|+ ....+....++|+++.|+||
T Consensus 110 ~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K 189 (384)
T 3zrp_A 110 PGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQK 189 (384)
T ss_dssp TTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTS
T ss_pred CCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcc
Confidence 89999999944479999999999999999999999999999999999999984 23344555689999999999
Q ss_pred ccc-CCCCeeEEEEEcChHHHHHH-------------HHHhhhhh-------hhcCC-CccHHHHH-HHHccC--CcHHH
Q 013210 247 FIS-GGADIIAGAVCGPANLVNSM-------------MDLHQGAL-------MLLGP-TMNPKVAF-ELSERI--PHLGL 301 (447)
Q Consensus 247 ~~g-~~g~~igG~l~~~~~~~~~l-------------~~~~~~~~-------~~~g~-~~~~~~a~-~~~~~~--~~l~~ 301 (447)
+++ ++| + |+++.++++++.+ ........ ...|+ ......+. .++..+ ..+..
T Consensus 190 ~~~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~ 266 (384)
T 3zrp_A 190 ALGSAAG--L-GLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIEN 266 (384)
T ss_dssp TTCCCSS--E-EEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred cccCCCc--e-EEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 886 444 5 9999999887776 32222110 01122 22122222 222221 12556
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013210 302 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs 381 (447)
..+++.++++++.+.|++++.++..+. + ....+.+++|.+++ .....+.+.|... | +.++
T Consensus 267 ~~~~~~~~~~~l~~~L~~~g~~~~~~~----~-----------~~~~~~~~~~~~~~-~~~~~~~~~l~~~---g-i~v~ 326 (384)
T 3zrp_A 267 RIKRHTMVASAIRAGLEALGLEIVARR----P-----------ESYSNTVTGVILKV-ADPQKVLAGTVNE---G-VEFA 326 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBSCSS----G-----------GGBCSSEEEEECSS-SCHHHHHHHHHTT---T-CCCE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEccCc----c-----------cccCccEEEEECCC-CCHHHHHHHHHHC---C-EEEe
Confidence 777888999999999998865544332 0 01245688999986 3356777777753 3 4555
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.|.. +. .+.+|||++ ..++++.++.+.++|+++
T Consensus 327 ~g~~--------~~----------------~~~iRi~~~-~~~~~e~i~~~~~~l~~~ 359 (384)
T 3zrp_A 327 PGVH--------PA----------------FKYFRIGHM-GWVTPNDAIIAISVIERT 359 (384)
T ss_dssp ECCC--------TT----------------CCEEEEECC-SSCCHHHHHHHHHHHHHH
T ss_pred cCCC--------CC----------------cCEEEEecc-ccCCHHHHHHHHHHHHHH
Confidence 5521 00 178999999 766666666666666554
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=243.79 Aligned_cols=270 Identities=15% Similarity=0.104 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHh----CC-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----GT-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|+++ |. +.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++
T Consensus 77 ~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~~~ 151 (412)
T 2x5d_A 77 IPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAV-----IAGAQVRSVP 151 (412)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HHTCEEEEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEee
Confidence 467889999888 73 479999999999999999999999999999999999887763 2577777776
Q ss_pred CC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC------CccC-
Q 013210 172 IS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------SPAR- 234 (447)
Q Consensus 172 ~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~------~~~~- 234 (447)
.+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+ +...
T Consensus 152 ~~~~~~~~~d~~~l~~~i-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 230 (412)
T 2x5d_A 152 LVPGIDFFNELERAIRES-IPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQV 230 (412)
T ss_dssp CSTTSCHHHHHHHHHHTE-ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred cCCccCCCCCHHHHHHhc-ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhc
Confidence 53 468888888 678999999999999999986 67899999999999999999965543 1222
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 310 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 310 (447)
.++++++.|+||++|++|.|+ ||+++++++++.+....... ...++.+.+.++..++... +++....+++.+++
T Consensus 231 ~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 308 (412)
T 2x5d_A 231 PGAKDIAVEFFTLSKSYNMAGWRI-GFMVGNPELVSALARIKSYH-DYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRR 308 (412)
T ss_dssp TTGGGTEEEEEECC-CCSCTTSCC-EEEEECHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred cCccCcEEEEecCccccCCcccce-EEEEcCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 267999999999999899998 99999999998887655421 1233334444444444433 33566677788999
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---HHHHHHHHhhcccccccccccccCccc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE---KANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~---~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
+++.+.|++++..+..| ..|.++++.++... ....+.+.|... .| +.+..|..+
T Consensus 309 ~~l~~~L~~~g~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~v~~g~~f- 365 (412)
T 2x5d_A 309 DVLVKGLREAGWMVENP-------------------KASMYVWAKIPEPYAHLGSLEFAKKLLQD--AK-VSVSPGIGF- 365 (412)
T ss_dssp HHHHHHHHHHTCCCCCC-------------------SBSSEEEEECCTTTGGGCHHHHHHHHHHH--HC-EECEEGGGG-
T ss_pred HHHHHHHHHCCCEecCC-------------------CeeeEEEEEcCCccCCCCHHHHHHHHHHH--CC-EEEeCchhh-
Confidence 99999998875544322 13457889986321 245677766421 23 455555221
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 422 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~ 422 (447)
.. ..++.+|||++ .
T Consensus 366 -------~~-------------~~~~~iRis~~-~ 379 (412)
T 2x5d_A 366 -------GD-------------YGDDHVRFALI-E 379 (412)
T ss_dssp -------CG-------------GGTTEEEEECC-S
T ss_pred -------CC-------------CCCCeEEEEec-C
Confidence 00 02478999999 6
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=252.51 Aligned_cols=292 Identities=14% Similarity=0.121 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhc--CCCC--eEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLC--SSGG--HVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~--~~gd--~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
..++++.+|++++ .+.+++|+||++|+.+++++++ ++|| +|+++.|+|+++...+. ..|.++.
T Consensus 84 ~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~-----~~g~~~~ 158 (437)
T 3g0t_A 84 LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCR-----ILGQKFE 158 (437)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHH-----HHTCCCE
T ss_pred hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHH-----HcCCEEE
Confidence 3678899998876 4579999999999999999998 9999 99999999999887773 2577777
Q ss_pred EeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC--------
Q 013210 169 FVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------- 231 (447)
Q Consensus 169 ~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-------- 231 (447)
+++.+ |+++|+++++++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+.
T Consensus 159 ~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 238 (437)
T 3g0t_A 159 SFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGE 238 (437)
T ss_dssp EEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTS
T ss_pred EEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccc
Confidence 77653 7899999985678999999999999999987 677899999999999999999654321
Q ss_pred ------cc-CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH-H-----------------HHHHhhhhhhhcCCCccH
Q 013210 232 ------PA-RLGADVVVHSISKFISGGADIIAGAVCGPANLVN-S-----------------MMDLHQGALMLLGPTMNP 286 (447)
Q Consensus 232 ------~~-~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~-----------------l~~~~~~~~~~~g~~~~~ 286 (447)
.. ..+.++++.|+||.+|++|.|+ ||++.++++++ . +...... .....+.+.+
T Consensus 239 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 316 (437)
T 3g0t_A 239 PLYQPSVANYTDNYILALSSSKAFSYAGQRI-GVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYA-LSSGATHSAQ 316 (437)
T ss_dssp SCCCCCGGGTCSCEEEEEESTTTTSCGGGCC-EEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHH-HHSSSCHHHH
T ss_pred cchhhccCCCCCcEEEEEcCccCCCCcccee-EEEEECHHHhhhhhhcccccccccchhHHHHHHHHhh-hcCCCCHHHH
Confidence 11 2467899999999999999998 99999988887 6 5443331 1123333333
Q ss_pred HHHHHHHccCCc----HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHH
Q 013210 287 KVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 362 (447)
Q Consensus 287 ~~a~~~~~~~~~----l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~ 362 (447)
.++..++..... +..+.+++.++++++.+.|++++..+.++.-...|. ..|.++++.+++. +.
T Consensus 317 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~ 383 (437)
T 3g0t_A 317 WGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPL------------ADGFYFTVGYKGM-DS 383 (437)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEEC------------CSSSEEEEEETTC-CH
T ss_pred HHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCC------------ceeEEEEEecCCC-CH
Confidence 344334433222 677788899999999999998866655211000010 1456889998732 35
Q ss_pred HHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 363 ~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..+.+.|... | +.++.|..+ .. ..++.+|||++ .. +++.++.+.++|.++
T Consensus 384 ~~l~~~L~~~---g-i~v~~~~~~--------~~-------------~~~~~iRis~~-~~-~~e~i~~~~~~l~~~ 433 (437)
T 3g0t_A 384 SKLIEKFVRY---G-MCAITLKTT--------GS-------------KRNEAMRICTS-LL-PESQFPDLEKRLQML 433 (437)
T ss_dssp HHHHHHHHHT---T-EECEESTTT--------TC-------------CCTTCEEEECS-SS-CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHc---C-eEEeecccc--------CC-------------CCCCEEEEEEe-cC-CHHHHHHHHHHHHHH
Confidence 6677777653 3 455544221 10 11377999999 54 445556666666554
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=245.39 Aligned_cols=288 Identities=16% Similarity=0.168 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHhC--------C-CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALEG--------T-EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~-~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|++++ . +.+++|+||++|+..++++++++||+|+++.|.|+++...+. ..|.++..++
T Consensus 63 ~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~ 137 (410)
T 3e2y_A 63 HPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVR-----MAGAVPVFIP 137 (410)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEEe
Confidence 3578888888875 2 679999999999999999999999999999999999987763 2566776665
Q ss_pred CC----------------CHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013210 172 IS----------------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS- 231 (447)
Q Consensus 172 ~~----------------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~- 231 (447)
.+ |+++|++++ ++++++|++++|+||||.+. ++++|+++|++||+++|+|++|+.+.+.
T Consensus 138 ~~~~~~~g~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~ 216 (410)
T 3e2y_A 138 LRSKPTDGMKWTSSDWTFDPRELESKF-SSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTG 216 (410)
T ss_dssp CEECCCCSSCCBGGGEECCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred ccccccccccccccCCcCCHHHHHhhc-CCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCC
Confidence 43 899999999 77899999999999999995 6889999999999999999999655432
Q ss_pred -----ccC----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc--------
Q 013210 232 -----PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-------- 294 (447)
Q Consensus 232 -----~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-------- 294 (447)
... .+.++++.|+||.+|++|.|+ ||+++++++++.+....... ...++.+.+.++...+.
T Consensus 217 ~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~ 294 (410)
T 3e2y_A 217 HTHVKIATLPGMWERTITIGSAGKTFSVTGWKL-GWSIGPAHLIKHLQTVQQNS-FYTCATPLQAALAEAFWIDIKRMDD 294 (410)
T ss_dssp CCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCC-EEEECCHHHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHTTTTS
T ss_pred CCCCCHHHcCCccCeEEEEecchhhcCCCCceE-EEEEECHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHhhhccccc
Confidence 111 246799999999999999998 99999999998887665411 12333333444444443
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH-----------HHH
Q 013210 295 RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE-----------KAN 363 (447)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~-----------~~~ 363 (447)
...++....+++.++++++.+.|++++..+..|. .|.++++.+.... ...
T Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (410)
T 3e2y_A 295 PECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPD-------------------GGYFIIADVSSLGADLSDMNSDEPYDY 355 (410)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCS-------------------BSSEEEEECGGGCCCCTTCCSSCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC-------------------ccEEEEEEchhhhcccccccccccCHH
Confidence 1344666777889999999999998877766553 4567888775210 122
Q ss_pred HHHHHh-hcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 364 RLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 364 ~l~~~l-~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+...+ .. .| +.++.|+.+..- .... ..++.||||++ . +++.++.+.++|++
T Consensus 356 ~~~~~ll~~---~g-v~v~~g~~f~~~----------~~~~------~~~~~iRis~~-~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 356 KFVKWMTKH---KK-LTAIPVSAFCDS----------KSKP------HFEKLVRFCFI-K--KDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHHHHHH---HS-EECEEGGGGSCT----------TTHH------HHTTEEEEECC-C--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---cC-EEEeCchhhCCC----------CCCC------CCCCEEEEEEc-C--CHHHHHHHHHHHHh
Confidence 444433 33 23 566666332110 0000 01588999999 6 56656666665554
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=246.34 Aligned_cols=284 Identities=18% Similarity=0.156 Sum_probs=205.1
Q ss_pred chHHHHHHHHHHHh----CC----C-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 99 PTVLNLSRQMAALE----GT----E-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 99 ~~~~~l~~~ia~l~----g~----~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
....++++.+|+++ |. + .+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..
T Consensus 63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~ 137 (376)
T 2dou_A 63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAAR-----VASLRTFL 137 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HTTCEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHH-----HcCCEEEE
Confidence 35678999999987 75 3 79999999999999999999999999999999999887763 25778877
Q ss_pred eCC-----CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----CccC--
Q 013210 170 VDI-----SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR-- 234 (447)
Q Consensus 170 v~~-----~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~~-- 234 (447)
++. .|+++|++++ ++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+ +...
T Consensus 138 ~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 216 (376)
T 2dou_A 138 IPLREDGLADLKAVPEGV-WREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALP 216 (376)
T ss_dssp ECBCTTSSBCGGGSCHHH-HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGST
T ss_pred eeCCCCCCCCHHHHHHhh-ccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcC
Confidence 775 2778888888 567999999999999999987 67889999999999999999955432 2222
Q ss_pred --CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHH
Q 013210 235 --LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRAL 311 (447)
Q Consensus 235 --~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~ 311 (447)
.+.++++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++... +++....+++.++++
T Consensus 217 ~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 294 (376)
T 2dou_A 217 GAKERVVELFSLSKSYNLAGFRL-GFALGSEEALARLERVKGVI-DFNQYAGVLRMGVEALKTPKEVVRGYARVYRERAL 294 (376)
T ss_dssp TGGGTEEEEEEHHHHHTCGGGCC-EEEEECHHHHHHHHHHHHHH-CCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecchhhcCChhhee-EEEecCHHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 257899999999999899998 99999999998887655421 1122333333444444432 235556677888999
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~ 391 (447)
++.+.|+++ ..+..|. .|.++++.++...+...+.+.|... | +.+..|..+
T Consensus 295 ~l~~~L~~~-~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~f----- 345 (376)
T 2dou_A 295 GMAEALKGV-LSLLPPR-------------------ATMYLWGRLPEGVDDLEFGLRLVER---G-VALAPGRGF----- 345 (376)
T ss_dssp HHHHHHTTT-SEECCCC-------------------BSSEEEEECCTTCCHHHHHHHHHHT---T-EECEEGGGG-----
T ss_pred HHHHHHHHh-cCccCCC-------------------eeEEEEEECCCCCCHHHHHHHHHHC---C-EEEcCchhh-----
Confidence 999999886 5443221 3457889987432245677777652 3 455555221
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.. ..++.+|||++ . +++.++.+.+.|++
T Consensus 346 ---~~-------------~~~~~~Ris~~-~--~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 346 ---GP-------------GGKGFVRIALV-R--PLEELLEAAKRIRE 373 (376)
T ss_dssp ---CG-------------GGTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred ---CC-------------CCCCeEEEEec-C--CHHHHHHHHHHHHH
Confidence 00 02478999999 6 34445555444443
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=243.17 Aligned_cols=285 Identities=15% Similarity=0.138 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+++++ | .+ .+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++
T Consensus 69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~ 143 (386)
T 1u08_A 69 VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIA-----LSGGIVKRMA 143 (386)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEee
Confidence 356778888774 5 35 89999999999999999999999999999999999887663 2577777776
Q ss_pred C------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------cc---
Q 013210 172 I------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PA--- 233 (447)
Q Consensus 172 ~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~--- 233 (447)
. .|+++|++++ ++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+. ..
T Consensus 144 ~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 222 (386)
T 1u08_A 144 LQPPHFRVDWQEFAALL-SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHP 222 (386)
T ss_dssp CCTTTCCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSH
T ss_pred cCcccCcCCHHHHHHhh-cccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhccc
Confidence 5 3899999999 778999999999999999986 689999999999999999999654331 11
Q ss_pred -CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHH
Q 013210 234 -RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRAL 311 (447)
Q Consensus 234 -~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~ 311 (447)
..++|+++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++... +.+....+++.++++
T Consensus 223 ~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 300 (386)
T 1u08_A 223 QLRERAVAVSSFGKTYHMTGWKV-GYCVAPAPISAEIRKVHQYL-TFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRD 300 (386)
T ss_dssp HHHTTEEEEEEHHHHTTCGGGCC-EEEECCHHHHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHH
T ss_pred CccCcEEEEecchhhcCCcccce-EEEEcCHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 2368999999999999899998 99999999988887655421 1223333333343444432 335556677889999
Q ss_pred HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccCccccc
Q 013210 312 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 312 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
++.+.|++.+.++..|. .|.++++.++.. .+...+.+.|.. +.| +.+..|..+.
T Consensus 301 ~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~g~~f~-- 356 (386)
T 1u08_A 301 ILVNALNESRLEILPCE-------------------GTYFLLVDYSAVSTLDDVEFCQWLTQ--EHG-VAAIPLSVFC-- 356 (386)
T ss_dssp HHHHHTTSSSCEECCCC-------------------BSSEEEEECTTTCCSCHHHHHHHHHH--HSC-EECEEGGGGC--
T ss_pred HHHHHHHHCCCeecCCC-------------------ceEEEEEecCCCCCCCHHHHHHHHHH--hCC-EEEeCchHhC--
Confidence 99999988766654332 356899998742 224566665542 123 4555442110
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~ 437 (447)
.. ...++.+|||++ . +++.++.+.+.|+
T Consensus 357 ---~~--------------~~~~~~iRis~~-~--~~~~i~~~~~~l~ 384 (386)
T 1u08_A 357 ---AD--------------PFPHKLIRLCFA-K--KESTLLAAAERLR 384 (386)
T ss_dssp ---SS--------------CCCSCEEEEECC-S--CHHHHHHHHHHHT
T ss_pred ---CC--------------CCCCCEEEEEEc-C--CHHHHHHHHHHHh
Confidence 00 012578999999 5 4555555555543
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-29 Score=246.08 Aligned_cols=296 Identities=15% Similarity=0.137 Sum_probs=210.7
Q ss_pred ccCCCCchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchh--HHHHHHhhcCcccCeeE
Q 013210 93 YSRHFNPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITT 167 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~~ 167 (447)
|+....+..+++++.+++++|.+ .+++|+||++|+.+++++++++||+|+++.++|++ +...+. . .|.++
T Consensus 61 ~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~----~-~g~~~ 135 (393)
T 1vjo_A 61 LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAG----R-YGADV 135 (393)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH----H-TTCEE
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHH----H-cCCce
Confidence 43333456789999999999875 69999999999999999999999999999999998 655542 2 57888
Q ss_pred EEeCC-----CCHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeE
Q 013210 168 TFVDI-----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADV 239 (447)
Q Consensus 168 ~~v~~-----~d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di 239 (447)
..++. .|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+ ....+....++|+
T Consensus 136 ~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di 214 (393)
T 1vjo_A 136 RTISKPWGEVFSLEELRTAL-ETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDL 214 (393)
T ss_dssp EEEECCTTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSE
T ss_pred EEEecCCCCCCCHHHHHHHH-hhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccE
Confidence 88775 3899999999 55 79999999999999999999999999999999999999994 2233334457899
Q ss_pred EEeCCCccccCCCCeeEEEEEcChHHHHHHHHH----hhh------------hhhhcCCCcc---HHHHHHHHccC--Cc
Q 013210 240 VVHSISKFISGGADIIAGAVCGPANLVNSMMDL----HQG------------ALMLLGPTMN---PKVAFELSERI--PH 298 (447)
Q Consensus 240 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~----~~~------------~~~~~g~~~~---~~~a~~~~~~~--~~ 298 (447)
++.|+||++++++ ++ |+++.++++++.+... ... ......++.+ +.++..++..+ ..
T Consensus 215 ~~~s~sK~l~~~~-~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~ 292 (393)
T 1vjo_A 215 AYSCSQKGLGCSP-GA-SPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEG 292 (393)
T ss_dssp EECCSSSTTCSCS-SC-EEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEcCcccccCCC-ce-EEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 9999999998887 67 9999999888777432 000 0011111222 22223333322 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013210 299 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM 378 (447)
Q Consensus 299 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~ 378 (447)
+....+++.++++++.+.|++.+.++..|. . +..+.+++|.++.......+.+.|... +| +
T Consensus 293 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i 353 (393)
T 1vjo_A 293 LANCWQRHQKNVEYLWERLEDIGLSLHVEK---------------E-YRLPTLTTVCIPDGVDGKAVARRLLNE--HN-I 353 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBSSCG---------------G-GBCSSEEEEECCTTCCHHHHHHHHHHH--HC-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCCc---------------c-ccCCcEEEEEcCCCCCHHHHHHHHHhh--CC-E
Confidence 456677889999999999988765554332 0 013458899886322356677777652 23 4
Q ss_pred cccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHh
Q 013210 379 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 379 ~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+..|.. +. .++.+||| ++ ..+.++.++.+.++|+++
T Consensus 354 ~v~~g~~--------~~---------------~~~~iRis~~~-~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 354 EVGGGLG--------EL---------------AGKVWRVGLMG-FNSRKESVDQLIPALEQV 391 (393)
T ss_dssp ECEECCG--------GG---------------TTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred EEecCcc--------cc---------------CCCEEEEeCCc-cCChHHHHHHHHHHHHHH
Confidence 5555521 10 24789999 46 556666677777777654
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=242.41 Aligned_cols=284 Identities=16% Similarity=0.176 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHh----C----CCe-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G----TEA-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|+++ | .+. +++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++
T Consensus 65 ~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~ 139 (389)
T 1gd9_A 65 LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVI-----LAGGKPVEVP 139 (389)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHH-----HHTCEEEEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HCCCEEEEec
Confidence 367888888887 6 357 9999999999999999998999999999999999887763 2577777776
Q ss_pred CC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC-
Q 013210 172 IS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR- 234 (447)
Q Consensus 172 ~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~- 234 (447)
.+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+. ...
T Consensus 140 ~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 218 (389)
T 1gd9_A 140 TYEEDEFRLNVDELKKYV-TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASL 218 (389)
T ss_dssp CCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred cCCccCCCCCHHHHHHhc-CcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhc
Confidence 42 789999999 668999999999999999985 889999999999999999999655431 222
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC---cHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCH 308 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~---~l~~~~~~~~~ 308 (447)
.++|+++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++.... .+....+++.+
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 296 (389)
T 1gd9_A 219 DGMFERTITVNGFSKTFAMTGWRL-GFVAAPSWIIERMVKFQMYN-ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDR 296 (389)
T ss_dssp TTCGGGEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHTTT-TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEecChhhcCCcccce-EEEEECHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 257999999999999899998 99999999988887665421 12223333333333443322 34556677889
Q ss_pred HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhh-cccccccccccccCcc
Q 013210 309 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ-NYAQFGFMAVSLGYYE 386 (447)
Q Consensus 309 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~-~~~~~g~~~vs~G~~~ 386 (447)
+++++.+.|++++.++..|. .|.++++.++. ......+.+.|. . .| +.+..|..+
T Consensus 297 ~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---~g-i~v~~g~~~ 353 (389)
T 1gd9_A 297 RRKLVWKRLNEMGLPTVKPK-------------------GAFYIFPRIRDTGLTSKKFSELMLKE---AR-VAVVPGSAF 353 (389)
T ss_dssp HHHHHHHHHHHTTCCCCCCC-------------------BTTEECCBCGGGTCCHHHHHHHHHHH---TC-EECEEGGGG
T ss_pred HHHHHHHHHHHcCCeecCCC-------------------eeeEEEEeccCCCCCHHHHHHHHHHh---CC-EEEeCchhh
Confidence 99999999988765443221 34467777752 112456777765 4 23 455544221
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
. . ..++.+|||++ . +++.++.+.+.|.++
T Consensus 354 ~--------~-------------~~~~~iRi~~~-~--~~~~i~~~l~~l~~~ 382 (389)
T 1gd9_A 354 G--------K-------------AGEGYVRISYA-T--AYEKLEEAMDRMERV 382 (389)
T ss_dssp C--------G-------------GGTTBEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred C--------C-------------CCCCeEEEEec-C--CHHHHHHHHHHHHHH
Confidence 0 0 02478999999 6 344455554444443
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=244.30 Aligned_cols=308 Identities=14% Similarity=0.125 Sum_probs=215.3
Q ss_pred cccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCC-----
Q 013210 66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSS----- 137 (447)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~----- 137 (447)
++++.+.+ +.+.+.+...++++. .|. ......+++++.+++++|.+ .+++|+||++|+.++++++..+
T Consensus 39 ~~~~~~~v~~a~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~ 114 (397)
T 3f9t_A 39 CSNVLPITRKIVDIFLETNLGDPG---LFK-GTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKR 114 (397)
T ss_dssp CCCCCTHHHHHHHHHTTCCTTSGG---GBH-HHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHhhcCCCcc---cCh-hHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhh
Confidence 34444554 666666655444432 111 22455678999999999874 4799999999999999988765
Q ss_pred --------CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccC-CceEEEEEcCCCCCcccc
Q 013210 138 --------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVA 203 (447)
Q Consensus 138 --------gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~ 203 (447)
||+|+++.++|+++...+. ..|.++++++.+ |+++|++++ ++ ++++|++++|+||||.+.
T Consensus 115 ~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~ 188 (397)
T 3f9t_A 115 RKGLSKNEHPKIIVPITAHFSFEKGRE-----MMDLEYIYAPIKEDYTIDEKFVKDAV-EDYDVDGIIGIAGTTELGTID 188 (397)
T ss_dssp HTTCCCCSSCEEEEETTCCTHHHHHHH-----HHTCEEEEECBCTTSSBCHHHHHHHH-HHSCCCEEEEEBSCTTTCCBC
T ss_pred hhcccCCCCeEEEECCcchhHHHHHHH-----HcCceeEEEeeCCCCcCCHHHHHHHH-hhcCCeEEEEECCCCCCCCCC
Confidence 8999999999999887773 258888888876 899999999 55 899999999999999999
Q ss_pred CHHHHHHHHHhcCCEEEEeCCCCCCC----------------CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH
Q 013210 204 NIPELSRLAHDKGVTVVVDNTFSPLV----------------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 267 (447)
Q Consensus 204 ~l~~I~~la~~~gi~livD~~~~~~~----------------~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~ 267 (447)
|+++|.++|++||+++|+|++|+.+. ++... ++|+++.|+||+++++. ++|++++.++.+.+
T Consensus 189 ~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~-~~g~~~~~~~~~~~ 266 (397)
T 3f9t_A 189 NIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPI-PSGGILFKDIGYKR 266 (397)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCS-SCEEEEESSGGGGG
T ss_pred CHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCC-CceEEEEeCHHHHH
Confidence 99999999999999999999995322 12223 78999999999987543 56444455555554
Q ss_pred HHHHHhhhhhhh------cCCC--ccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHH
Q 013210 268 SMMDLHQGALML------LGPT--MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHEL 337 (447)
Q Consensus 268 ~l~~~~~~~~~~------~g~~--~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l 337 (447)
.+..... .... .+.. ......++++. ....+....++..++++++.+.|++++..+..+.
T Consensus 267 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~--------- 336 (397)
T 3f9t_A 267 YLDVDAP-YLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIEP--------- 336 (397)
T ss_dssp GTCEECT-TSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC---------
T ss_pred hhccCCc-cccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCC---------
Confidence 4321111 0000 0111 12222222222 2234566777888999999999998865544332
Q ss_pred HHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 013210 338 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 417 (447)
Q Consensus 338 ~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRi 417 (447)
.+++++|.+++ ...+.+.|... | +.++.|. .++.+||
T Consensus 337 ----------~~~~~~~~~~~---~~~~~~~l~~~---g-i~v~~~~--------------------------~~~~~Ri 373 (397)
T 3f9t_A 337 ----------ILNIVAIEDED---YKEVCKKLRDR---G-IYVSVCN--------------------------CVKALRI 373 (397)
T ss_dssp ----------SSSEEEEECTT---HHHHHHHHHHT---T-CBCEECS--------------------------SSSEEEE
T ss_pred ----------CccEEEEEeCC---HHHHHHHHHhC---C-eEEeccC--------------------------CCCEEEE
Confidence 35588888875 34566666652 3 3444331 1478999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHh
Q 013210 418 SVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 418 S~g~~~~~~~~i~~l~~al~~~ 439 (447)
|++ ...+++.++.+.++|+++
T Consensus 374 ~~~-~~~~~e~i~~~~~~l~~~ 394 (397)
T 3f9t_A 374 VVM-PHIKREHIDNFIEILNSI 394 (397)
T ss_dssp ECC-TTCCHHHHHHHHHHHHHH
T ss_pred EEc-CCCCHHHHHHHHHHHHHh
Confidence 999 888888888888888765
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=244.78 Aligned_cols=289 Identities=15% Similarity=0.166 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+++++ | .+ .+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++
T Consensus 79 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~ 153 (429)
T 1yiz_A 79 HPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVK-----AAGGIPRFIP 153 (429)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEe
Confidence 356777777775 5 35 89999999999999999999999999999999999887763 2566766665
Q ss_pred C---------------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013210 172 I---------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-- 231 (447)
Q Consensus 172 ~---------------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-- 231 (447)
. .|+++|++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~ 232 (429)
T 1yiz_A 154 LKPNKTGGTISSADWVLDNNELEALF-NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF 232 (429)
T ss_dssp CBCCCSSSSEEGGGCBCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS
T ss_pred CCcccccccccccCcccCHHHHHHHh-ccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC
Confidence 3 3789999999 778999999999999999985 889999999999999999999654321
Q ss_pred ----cc----CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc--------
Q 013210 232 ----PA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-------- 295 (447)
Q Consensus 232 ----~~----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-------- 295 (447)
.. ..++|+++.|+||.+|++|.|+ |++++++++++.+...... ....++.+.+.++..++..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~ 310 (429)
T 1yiz_A 233 EHIRICTLPGMWERTITIGSAGKTFSLTGWKI-GWAYGPEALLKNLQMVHQN-CVYTCATPIQEAIAVGFETELKRLKSP 310 (429)
T ss_dssp CCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC-EEEESCHHHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHTTTTST
T ss_pred CCcChhhccCCcCceEEEecchhccCCCCcce-EEEEeCHHHHHHHHHHHhh-cccCCChHHHHHHHHHHhcccccccch
Confidence 11 2368999999999999999998 9999999998888765431 1123344444444444443
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------------HHHH
Q 013210 296 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------------EKAN 363 (447)
Q Consensus 296 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------------~~~~ 363 (447)
.+.+....+++.++++++.+.|++++..+..|. .|.++++.++.. ....
T Consensus 311 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (429)
T 1yiz_A 311 ECYFNSISGELMAKRDYMASFLAEVGMNPTVPQ-------------------GGYFMVADWSSLDSKVDLTQETDARKDY 371 (429)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECS-------------------BSSEEEEECCSSCTTTTCCSSSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-------------------cceEEEEEcccccccccccccccCCCHH
Confidence 334566667788999999999988776655332 356899998742 2355
Q ss_pred HHHHHhh-cccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 364 RLMNYLQ-NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 364 ~l~~~l~-~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+.+.|. . .| +.+..|..+.. .. . .+..++.+|||++ . +++.++.+.+.|+++
T Consensus 372 ~l~~~l~~~---~g-v~v~~g~~f~~---~~-~------------~~~~~~~iRis~~-~--~~e~i~~~l~~l~~~ 425 (429)
T 1yiz_A 372 RFTKWMTKS---VG-LQGIPPSAFYS---EP-N------------KHLGEDFVRYCFF-K--KDENLQKAAEILRKW 425 (429)
T ss_dssp HHHHHHHHH---TS-EECBCGGGGSC---GG-G------------GGGTTTEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CC-EEEeCchHhCC---Cc-c------------cCCCCCeEEEEec-C--CHHHHHHHHHHHHHh
Confidence 6776664 3 23 45544422100 00 0 0112578999999 5 456666666666554
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=239.28 Aligned_cols=278 Identities=13% Similarity=0.160 Sum_probs=201.7
Q ss_pred CchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 98 NPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
++...++++.+|++++. +.+++|+||++|++++++++ |+|+++.|.|+++...+. ..|.++.+++.+
T Consensus 60 ~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~ 130 (361)
T 3ftb_A 60 DVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEINAK-----KHGVSVVFSYLDEN 130 (361)
T ss_dssp CTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHHH-----HTTCEEEEEECCTT
T ss_pred CccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHHH-----HcCCeEEEeecCcc
Confidence 34457899999999985 56999999999999999876 899999999999887773 258888887754
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC----Ccc----CCCCeE
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL----SPA----RLGADV 239 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~----~~~----~~g~di 239 (447)
++++|++++ ++ +++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.. .+. ..+.++
T Consensus 131 ~~~~~~~l~~~l-~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i 208 (361)
T 3ftb_A 131 MCIDYEDIISKI-DD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLF 208 (361)
T ss_dssp SCCCHHHHHHHT-TT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEE
T ss_pred cCCCHHHHHHhc-cC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEE
Confidence 679999999 55 999999999999999986 66788888899999999999965443 111 225678
Q ss_pred EEeCCCccccCCCCeeEEEEE-cChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013210 240 VVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 240 ~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 318 (447)
++.|+||.+|++|.++ |+++ .++++++.+...... ...+.+.+.++..++...+.+..+.+++.++++++.+.|+
T Consensus 209 ~~~s~sK~~~~~G~r~-g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 284 (361)
T 3ftb_A 209 IIRAMTKFFAMPGIRF-GYGITNNKEIAAKIKAKQNP---WNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELN 284 (361)
T ss_dssp EEEESSSTTSCGGGCC-EEEEESCHHHHHHHHTTSCT---TCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeChhhcCCCCcce-eEEEeCCHHHHHHHHhhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 8877 899998888765441 2222222333333333323355667778899999999999
Q ss_pred hCCC-e-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccccc
Q 013210 319 KLGL-K-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 396 (447)
Q Consensus 319 ~~~~-~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~ 396 (447)
+++. . +. +. .|+++++.++. .+...+.+.|... | +.++.|..+ .
T Consensus 285 ~~~~~~~~~-~~-------------------~~~~~~~~~~~-~~~~~l~~~l~~~---g-i~v~~g~~~--------~- 330 (361)
T 3ftb_A 285 KIGFIKRVF-SP-------------------HANFVLCRLEN-ISGEKLYDSLLKE---D-IVIRRCCNF--------I- 330 (361)
T ss_dssp HSSSEEEEE-CC-------------------SSSEEEEEESS-SCHHHHHHHHHTT---T-EECEECTTS--------T-
T ss_pred hCCCCceec-CC-------------------CCeEEEEEcCC-CCHHHHHHHHHHC---C-eEEeeCccC--------C-
Confidence 8754 4 43 22 35688899875 2356677777653 3 565655321 1
Q ss_pred CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 397 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 397 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+..++.+|||++ . .+.+++|.++|+++.
T Consensus 331 ------------~~~~~~iRis~~-~---~~~~~~l~~~l~~~~ 358 (361)
T 3ftb_A 331 ------------GLDDSFVRFAIK-D---EKKNTKFLRALKGVE 358 (361)
T ss_dssp ------------TCCTTEEEEECC-C---HHHHHHHHHHHHHHH
T ss_pred ------------CCCCCEEEEEcC-C---HHHHHHHHHHHHHHH
Confidence 123588999999 3 233455555555543
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=240.52 Aligned_cols=277 Identities=13% Similarity=0.107 Sum_probs=198.4
Q ss_pred hHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCC---
Q 013210 100 TVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD--- 174 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d--- 174 (447)
...++++.+|++++.+ .+++|+||++|+.++++++ +||+|+++.|.|+++...+. ..|.++..++.+.
T Consensus 60 ~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~ 132 (364)
T 1lc5_A 60 DYFHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALA-----QSGCEIRRWSLREADG 132 (364)
T ss_dssp TCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHH-----HTTCEEEEEECCGGGT
T ss_pred CHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHH-----HcCCeEEEEeCCcccc
Confidence 4578999999999864 6999999999999999988 67999999999999887763 2577887777642
Q ss_pred ---HHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC---Ccc----CCCCeEEE
Q 013210 175 ---HEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL---SPA----RLGADVVV 241 (447)
Q Consensus 175 ---~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~---~~~----~~g~di~~ 241 (447)
++++.+.+ ++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+ .+. ..+.++++
T Consensus 133 ~~~l~~~~~~~-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~ 211 (364)
T 1lc5_A 133 WQLTDAILEAL-TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVL 211 (364)
T ss_dssp TCCCTTHHHHC-CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEE
T ss_pred cchhHHHHHhc-cCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEE
Confidence 35455556 578899999999999999998 89999999999999999999955432 112 24689999
Q ss_pred eCCCccccCCCCeeEEEEE-cChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 242 HSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
.|+||++|++|.|+ ||++ .++++++.+...... ...+.+.+.++..++...+++....+++.++++++.+.|+++
T Consensus 212 ~s~sK~~~~~G~r~-G~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 287 (364)
T 1lc5_A 212 RSLTKFYAIPGLRL-GYLVNSDDAAMARMRRQQMP---WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL 287 (364)
T ss_dssp EESTTTTTCTTTCC-EEEECCCHHHHHHHHHHSCT---TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EECchhhcCCccce-EEEEECCHHHHHHHHHhCCC---CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999899998 9998 999998888765541 222223233333333322235556667888899999999887
Q ss_pred C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCC
Q 013210 321 G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399 (447)
Q Consensus 321 ~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~ 399 (447)
+ ..+. |. .|+++++.++.. ...+.+.|... | +.+..|..+ .
T Consensus 288 ~~~~~~-~~-------------------~g~~~~~~~~~~--~~~l~~~l~~~---g-i~v~~g~~~--------~---- 329 (364)
T 1lc5_A 288 PLLTVY-PG-------------------RANYLLLRCERE--DIDLQRRLLTQ---R-ILIRSCANY--------P---- 329 (364)
T ss_dssp TTEEEC-CC-------------------SSSEEEEEESCT--TCCHHHHHHTT---T-EECEECTTS--------T----
T ss_pred CCCEEC-CC-------------------CCeEEEEECCCc--HHHHHHHHHHC---C-cEEeeCccc--------C----
Confidence 3 3432 22 356888888742 33566666642 3 455555221 0
Q ss_pred CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 400 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+..++++|||++ . .+.++.+.++|+++
T Consensus 330 ---------~~~~~~iRis~~-~---~~~~~~l~~~l~~~ 356 (364)
T 1lc5_A 330 ---------GLDSRYYRVAIR-S---AAQNERLLAALRNV 356 (364)
T ss_dssp ---------TCCTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred ---------CCCCCEEEEEeC-C---HHHHHHHHHHHHHH
Confidence 123578999999 4 33345555555544
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=240.71 Aligned_cols=288 Identities=12% Similarity=0.077 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|+++ | .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~ 142 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-----NQERKIIECEL 142 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----TTTCEEEECCC
T ss_pred cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEeccc
Confidence 467888888774 5 3569999999999999999999999999999999999887763 25777777765
Q ss_pred --------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC-
Q 013210 173 --------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR- 234 (447)
Q Consensus 173 --------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~- 234 (447)
.|+++|+++++++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+. ...
T Consensus 143 ~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 222 (399)
T 1c7n_A 143 LEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSI 222 (399)
T ss_dssp EEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred ccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHc
Confidence 37999999994378999999999999999998 899999999999999999999654321 222
Q ss_pred ----CCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHH
Q 013210 235 ----LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCH 308 (447)
Q Consensus 235 ----~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~ 308 (447)
.+.++++.|+||.+|++|.|+ ||++.+ +++++.+............+.+.+.++..++.. .+.+....+++.+
T Consensus 223 ~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 301 (399)
T 1c7n_A 223 DEQLADKTITFTAPSKTFNIAGMGM-SNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDK 301 (399)
T ss_dssp CHHHHTTEEEEECSHHHHTCGGGCC-EEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CccccCcEEEEEeChhhccccchhe-EEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 256799999999999899998 999886 678888876654221112233333333333332 2335556667889
Q ss_pred HHHHHHHHHHh-CC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh-cccccccccccccC
Q 013210 309 RALIFARRMKK-LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ-NYAQFGFMAVSLGY 384 (447)
Q Consensus 309 ~~~~l~~~L~~-~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~-~~~~~g~~~vs~G~ 384 (447)
+++++.+.|++ ++ ..+..| ..|.++++.++.. .....+.+.|. . .| +.+..|.
T Consensus 302 ~~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---~g-i~v~~g~ 358 (399)
T 1c7n_A 302 NQRIVKDFFEVNHPEIKAPLI-------------------EGTYLQWIDFRALKMDHKAMEEFMIHK---AQ-IFFDEGY 358 (399)
T ss_dssp HHHHHHHHHHHHCTTSBCCCC-------------------SBSSEEEEECGGGCCCHHHHHHHHHHT---TC-CCCEEGG
T ss_pred HHHHHHHHHHhhCCCCeEecC-------------------CceEEEEEEcccCCCCHHHHHHHHHHh---CC-EEEeCcc
Confidence 99999999987 53 333221 1234667888631 12456777775 4 23 4555553
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHHh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSRM 439 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~~ 439 (447)
.+. + ..++.+|||++ .. ++++.++.|.++++++
T Consensus 359 ~~~----~-----------------~~~~~iRis~~-~~~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 359 IFG----D-----------------GGIGFERINLA-APSSVIQESLERLNKALKDL 393 (399)
T ss_dssp GGC----G-----------------GGTTEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred ccC----C-----------------CCCCeEEEEec-cCHHHHHHHHHHHHHHHHHH
Confidence 211 0 12478999999 64 2333344444444443
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-28 Score=239.99 Aligned_cols=287 Identities=13% Similarity=0.099 Sum_probs=202.3
Q ss_pred HHHHHHHHHHh----C-----CC-eEEEeCChHHHHHHHHHHhcCCC-----CeEEEeCCCchhHHHHHHhhcCcccCee
Q 013210 102 LNLSRQMAALE----G-----TE-AAYCTASGMSAISSVLMQLCSSG-----GHVVAARTLYGGTHALLTHFFPRACNIT 166 (447)
Q Consensus 102 ~~l~~~ia~l~----g-----~~-~~~~tsggt~A~~~al~~l~~~g-----d~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 166 (447)
.++++.+++++ | .+ .+++|+||++|+.+++++++++| |+|+++.|.|+++...+. ..|.+
T Consensus 69 ~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~-----~~g~~ 143 (396)
T 3jtx_A 69 PELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATL-----LGGGE 143 (396)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHH-----HTTCE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHH-----HcCCE
Confidence 45666666654 5 45 89999999999999999999986 799999999999887763 26778
Q ss_pred EEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCCc---c-
Q 013210 167 TTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLSP---A- 233 (447)
Q Consensus 167 ~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~~---~- 233 (447)
+..++.+ |+++|++++ ++++++|++++|+||||.+++.+ +|+++|++||+++|+|++|+.+.+.. .
T Consensus 144 ~~~v~~~~~g~~~d~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~ 222 (396)
T 3jtx_A 144 IHFANCPAPSFNPDWRSISEEV-WKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLG 222 (396)
T ss_dssp EEEEECCTTTCCCCGGGSCHHH-HHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCC
T ss_pred EEEeecCCCCCccCHHHHHHhh-ccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCch
Confidence 8777653 778888888 66899999999999999998755 58999999999999999996654321 1
Q ss_pred ----------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHH
Q 013210 234 ----------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM 303 (447)
Q Consensus 234 ----------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 303 (447)
..+.++++.|+||.++++|.|+ ||+++++++++.+....... ....+.+.+.++..++...+++....
T Consensus 223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~ 300 (396)
T 3jtx_A 223 CLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRS-GFVAGDAELLKNFLLYRTYH-GSAMSIPVQRASIAAWDDEQHVIDNR 300 (396)
T ss_dssp HHHHHHHTTCCCTTEEEEEESTTTSSCGGGCC-EEEEECHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHhhhhhcccccCcEEEEeccccccCCcccce-EEEEeCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHhCCHHHHHHHH
Confidence 2578899999999999999998 99999999998887665411 12223333444444454444566677
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013210 304 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
+++.++++.+.+.|++. ..+..| ..|.++++.++.. ....+...|.. +.| +.++.|
T Consensus 301 ~~~~~~~~~l~~~l~~~-~~~~~~-------------------~~~~~~~~~~~~~-~~~~~~~~l~~--~~g-i~v~~g 356 (396)
T 3jtx_A 301 RLYQEKFERVIPILQQV-FDVKLP-------------------DASFYIWLKVPDG-DDLAFARNLWQ--KAA-IQVLPG 356 (396)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCCCC-------------------SSSSEEEEECTTS-CHHHHHHHHHH--HHC-EECEEG
T ss_pred HHHHHHHHHHHHHHHhc-CCccCC-------------------CeeEEEEEECCCC-CHHHHHHHHHH--HCC-EEEeCC
Confidence 77888999999999765 222222 1456899999742 24556666632 123 566666
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
..+..- +. . .....+.+|||++ . +++.++.+.+.|.+
T Consensus 357 ~~~~~~----~~--~---------~~~~~~~iRis~~-~--~~~~i~~~l~~l~~ 393 (396)
T 3jtx_A 357 RFLARD----TE--Q---------GNPGEGYVRIALV-A--DVATCVKAAEDIVS 393 (396)
T ss_dssp GGGCCC----CT--T---------CCTTTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred hHhCCc----cc--c---------cCCCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence 432210 00 0 0123589999999 6 44545555555543
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=246.58 Aligned_cols=296 Identities=15% Similarity=0.081 Sum_probs=209.6
Q ss_pred ccccCCCCchHHHHHHHHHHHhC----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 166 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 166 (447)
+.|+....+..+.+++.+++..+ .+.++||+||++|+++++++++++||+|++..|.|+++...+. ..|.+
T Consensus 92 ~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~-----~~g~~ 166 (421)
T 3l8a_A 92 FGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIR-----LNDHR 166 (421)
T ss_dssp SSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHH-----HTTEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHH-----HCCCE
Confidence 55666556666777777777776 3569999999999999999999999999999999999887763 25777
Q ss_pred EEEeCCC--------CHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCC----
Q 013210 167 TTFVDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS---- 231 (447)
Q Consensus 167 ~~~v~~~--------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~---- 231 (447)
+..++.+ |+++|++++.++++++|++++|+||+|.+. ++++|+++|++||+++|+|++|+.+.+.
T Consensus 167 ~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~ 246 (421)
T 3l8a_A 167 LVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTH 246 (421)
T ss_dssp EEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred EEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 7776643 899999999437899999999999999994 6889999999999999999999655332
Q ss_pred --ccC-----CCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHH
Q 013210 232 --PAR-----LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLR 302 (447)
Q Consensus 232 --~~~-----~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~ 302 (447)
... .+.++++.|+||.+|++|.++ |+++.+ +++.+.+...........++.+.+.++..++... +++...
T Consensus 247 ~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~-G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~ 325 (421)
T 3l8a_A 247 HSLNTLDASYKDFTIILSSATKTFNIAGTKN-SFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEEL 325 (421)
T ss_dssp CCGGGSCTTGGGTEEEEECSHHHHTCGGGCC-EEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccHHHcCchhcCcEEEEEeChhhccCchhhe-EeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHHH
Confidence 111 256799999999999899998 888887 8888888766542222233334444444444422 335667
Q ss_pred HHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccc
Q 013210 303 MKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAV 380 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~v 380 (447)
.+++.++++++.+.|+++ +..+..|. .+.++++.++.. .....+.+.|... .| +.+
T Consensus 326 ~~~~~~~~~~l~~~L~~~~~i~~~~~~-------------------~~~~~~v~~~~~~~~~~~l~~~l~~~--~g-i~v 383 (421)
T 3l8a_A 326 KTVIEGNIKLVIKELEAKTKIKVMEPE-------------------GTYLVWLDFSAYAIAQPQLSEKLQNE--AK-VVL 383 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCEEECCS-------------------BSSEEEEECGGGTCCTTHHHHHHHHT--TC-EEC
T ss_pred HHHHHHHHHHHHHHHHhCCCceEeCCC-------------------eeEEEEEeccccCCCHHHHHHHHHHh--CC-EEE
Confidence 777889999999999886 44554332 234666887631 1245566666421 23 455
Q ss_pred cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 381 s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+.|..+ . ...++.+|||++ . +++.++...+.|++
T Consensus 384 ~~g~~f--------~-------------~~~~~~iRi~~~-~--~~~~i~~~l~~l~~ 417 (421)
T 3l8a_A 384 NDGAHF--------G-------------KEGKYFARLNVA-T--PKNTVQEALSRIIS 417 (421)
T ss_dssp EEGGGG--------C-------------GGGTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred ECchhh--------C-------------CCCCCEEEEEec-C--CHHHHHHHHHHHHH
Confidence 655321 1 012588999999 5 34445555444443
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=243.42 Aligned_cols=288 Identities=15% Similarity=0.180 Sum_probs=209.5
Q ss_pred chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 99 PTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
+...++++.+++++|.+ .+++|+||++|+.++++++ +++||+|+++.++|+++...+...... .|.++..++.+
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~ 137 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAAR-FGITYRFFPVAAT 137 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHH-HCCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHH-hCcEEEEEcCCCC
Confidence 56789999999999975 6999999999999999998 789999999999999987654332222 58888888763
Q ss_pred -----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH----hcCCEEEEeCCCCC--CCCCccCCCCeEEEe
Q 013210 174 -----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH----DKGVTVVVDNTFSP--LVLSPARLGADVVVH 242 (447)
Q Consensus 174 -----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~----~~gi~livD~~~~~--~~~~~~~~g~di~~~ 242 (447)
|+++|++++ ++++++|++++|+||||.+.|+++|.++|+ ++|+++|+|++|+. ...+....++|+++.
T Consensus 138 ~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~ 216 (390)
T 1elu_A 138 LNQGDAAAVLANHL-GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAF 216 (390)
T ss_dssp SSSSCHHHHHHTTC-CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEE
T ss_pred CCccchHHHHHHhc-CCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEc
Confidence 789999999 678999999999999999999999999999 99999999999942 223333457899999
Q ss_pred CCCc-cccCCCCeeEEEEEcChHHHHHHHHHhhhh-------------------hhhcCCCc-c-HHHHHHHHc---cCC
Q 013210 243 SISK-FISGGADIIAGAVCGPANLVNSMMDLHQGA-------------------LMLLGPTM-N-PKVAFELSE---RIP 297 (447)
Q Consensus 243 S~sK-~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-------------------~~~~g~~~-~-~~~a~~~~~---~~~ 297 (447)
|+|| .+|+.| + |+++.++++++.+.....+. ....++.. . ..++..++. ...
T Consensus 217 s~~K~~~~~~g--~-G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~ 293 (390)
T 1elu_A 217 TGHKWFAGPAG--V-GGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQG 293 (390)
T ss_dssp ESSSTTCCCTT--C-EEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccCCCc--e-EEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999 555444 5 99998888776654321000 01122221 1 122222222 223
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 376 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g 376 (447)
++....+++.++++++.+.|+++ +.++..|. + +.|+++.|.++.......+.+.|... |
T Consensus 294 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g 353 (390)
T 1elu_A 294 TAEERYQAICQRSEFLWRGLNQLPHVHCLATS----A-------------PQAGLVSFTVDSPLGHRAIVQKLEEQ---R 353 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS----C-------------CSSSEEEEEECSSSCHHHHHHHHHHT---T
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc----c-------------ccccEEEEEcCCCCCHHHHHHHHHHC---C
Confidence 36677788899999999999987 44554432 1 35668999986222245677777642 3
Q ss_pred cccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 377 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 377 ~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.+..|. .++.+|||++ ...+++.++.+.++|+++
T Consensus 354 -i~v~~~~--------------------------~~~~iRis~~-~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 354 -IYLRTIA--------------------------DPDCIRACCH-YITDEEEINHLLARLADF 388 (390)
T ss_dssp -EECEEET--------------------------TTTEEEEECC-TTCCHHHHHHHHHHHTTC
T ss_pred -EEEEecC--------------------------CCCeEEEecc-cCCCHHHHHHHHHHHHhh
Confidence 3444331 2478999998 888888888888888765
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=244.06 Aligned_cols=285 Identities=17% Similarity=0.146 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 101 VLNLSRQMAALEG----------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 101 ~~~l~~~ia~l~g----------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
..++++.+|++++ .+.+++|+||++|+..++++++++||.|+++.|.|+++...+. ...|.++..+
T Consensus 88 ~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~----~~~g~~~~~~ 163 (435)
T 3piu_A 88 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLK----WRTGVEIVPI 163 (435)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT----TTTCCEEEEE
T ss_pred cHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHH----HhcCCEEEEe
Confidence 4689999999987 5679999999999999999999999999999999998876552 1268888887
Q ss_pred CCC-------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc--
Q 013210 171 DIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-- 233 (447)
Q Consensus 171 ~~~-------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-- 233 (447)
+.+ |+++|++++++ .++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+...
T Consensus 164 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 243 (435)
T 3piu_A 164 HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 243 (435)
T ss_dssp ECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC
T ss_pred eCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Confidence 764 89999998832 37899999999999999987 47888899999999999999965333211
Q ss_pred --------C---------CCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc
Q 013210 234 --------R---------LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER 295 (447)
Q Consensus 234 --------~---------~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~ 295 (447)
+ .+.++++.|+||.+|.+|.|+ |++++ ++++.+.+...... ...+.+.+.++...+..
T Consensus 244 ~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~ 319 (435)
T 3piu_A 244 ISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSSF---GLVSSQTQHLLSAMLSD 319 (435)
T ss_dssp CCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCE-EEEEESCHHHHHHHHHHGGG---SCCCHHHHHHHHHHHHC
T ss_pred cCHHHhccccccccccCCCCCEEEEEeeecccCCCceeE-EEEEeCCHHHHHHHHHHhhc---CCCCHHHHHHHHHHhcC
Confidence 1 233488999999999899998 88887 56777777655441 22333444444444433
Q ss_pred CC----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------HHHHHH
Q 013210 296 IP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EKANRL 365 (447)
Q Consensus 296 ~~----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------~~~~~l 365 (447)
.. .+.+..+++.++++++.+.|++.++++..+. .|.++++.++.. .....+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~l~~~~~~~~~~~~~~~ 380 (435)
T 3piu_A 320 KKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGN-------------------AGLFCWVDMRHLLRSNTFEAEMEL 380 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCC-------------------SSSEEEEECGGGSSSSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC-------------------eeEEEEEEcccccccCCchhHHHH
Confidence 22 2344556778889999999988876554322 346899998742 134566
Q ss_pred HHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 366 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 366 ~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+.|... +| +.+..|..+ . ...++.+|||++ .. +++.++.+.++|.+
T Consensus 381 ~~~l~~~--~g-i~v~~g~~~--------~-------------~~~~~~iRi~~~-~~-~~e~i~~~l~~l~~ 427 (435)
T 3piu_A 381 WKKIVYE--VH-LNISPGSSC--------H-------------CTEPGWFRVCFA-NL-PERTLDLAMQRLKA 427 (435)
T ss_dssp HHHHHHT--SC-EECEEGGGG--------T-------------CSSTTEEEEECS-SS-CHHHHHHHHHHHHH
T ss_pred HHHHHHH--CC-EEEeCCccc--------C-------------CCCCCEEEEEee-CC-CHHHHHHHHHHHHH
Confidence 6666542 34 455555221 1 012578999999 64 34444444444443
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=241.55 Aligned_cols=296 Identities=20% Similarity=0.242 Sum_probs=206.3
Q ss_pred HHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.++++.+|+++ | .+ .+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++.
T Consensus 65 ~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~~v~~ 139 (411)
T 2o0r_A 65 APLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVA-----MAGAHRVTVPL 139 (411)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH-----HcCCEEEEeec
Confidence 56777777775 5 34 79999999999999999999999999999999999887763 25777776654
Q ss_pred --------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC-
Q 013210 173 --------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PAR- 234 (447)
Q Consensus 173 --------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~- 234 (447)
.|+++|++++ ++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+. ...
T Consensus 140 ~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 218 (411)
T 2o0r_A 140 VPDGRGFALDADALRRAV-TPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF 218 (411)
T ss_dssp EEETTEEECCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred cccccCCCCCHHHHHHhh-ccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhc
Confidence 3899999999 678999999999999999987 589999999999999999999654331 111
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA 310 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~ 310 (447)
.++|+++.|+||.+|++|.|+ |++++++++++.+....... ....+.+.+.++..++... +.+....+++.+++
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 296 (411)
T 2o0r_A 219 DGMAERTITISSAAKMFNCTGWKI-GWACGPAELIAGVRAAKQYL-SYVGGAPFQPAVALALDTEDAWVAALRNSLRARR 296 (411)
T ss_dssp TTTGGGEEEEEEHHHHTTCTTTCE-EEEECCHHHHHHHHHHHHHH-TSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeechhhcCCccceE-EEEeeCHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 367999999999999999998 99999999988887654421 1233444444444444332 23455667788999
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccCcccc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETL 388 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~~~s~ 388 (447)
+++.+.|++.+..+..|. .|.++++.++.. .+...+.+.|.. +.| +.+..|..+..
T Consensus 297 ~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~g~~f~~ 354 (411)
T 2o0r_A 297 DRLAAGLTEIGFAVHDSY-------------------GTYFLCADPRPLGYDDSTEFCAALPE--KVG-VAAIPMSAFCD 354 (411)
T ss_dssp HHHHHHHHHHTCEECCCC-------------------BSSEEEEECGGGTCCCHHHHHHHHHH--HHS-EECEEGGGGSC
T ss_pred HHHHHHHHHcCCEecCCC-------------------eeEEEEEecCCCCCCCHHHHHHHHHH--hCC-EEEcChhhhCC
Confidence 999999988766654332 355889988631 124556665532 123 45554522110
Q ss_pred ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 389 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
. ...+++++. ...++.+|||++ . +++.++.+.++|.++.
T Consensus 355 ---~-----~~~~~~~~~--~~~~~~iRis~~-~--~~e~i~~~~~~l~~~~ 393 (411)
T 2o0r_A 355 ---P-----AAGQASQQA--DVWNHLVRFTFC-K--RDDTLDEAIRRLSVLA 393 (411)
T ss_dssp ---C-----C----------CCGGGCEEEECC-S--CHHHHHHHHHHHGGGG
T ss_pred ---C-----ccccccccc--cCCCCeEEEEec-C--CHHHHHHHHHHHHHHH
Confidence 0 000111111 112478999999 5 4556666666666543
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=238.66 Aligned_cols=279 Identities=11% Similarity=0.066 Sum_probs=199.3
Q ss_pred HHHHHHHHHHh----CC----CeEEEeCChHHHHHHHHHHhcCC--CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 102 LNLSRQMAALE----GT----EAAYCTASGMSAISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 102 ~~l~~~ia~l~----g~----~~~~~tsggt~A~~~al~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.++++.+|+++ |. +.+++|+||++|+.+++++++++ ||+|+++.|.|+++...+. ..|.++..++
T Consensus 62 ~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~ 136 (376)
T 3ezs_A 62 ESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAK-----FIKAKSLLMP 136 (376)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHH-----HTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHH-----HcCCEEEEcc
Confidence 56777777765 53 56999999999999999999999 9999999999999887763 2688888887
Q ss_pred CCCHH----HHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----cc------
Q 013210 172 ISDHE----MVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA------ 233 (447)
Q Consensus 172 ~~d~~----~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~------ 233 (447)
.++.+ ++++++ .+++++|++++|+||||.+++ +++|+++|++||+++|+|++|+.+.+. ..
T Consensus 137 ~~~~~~~~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 215 (376)
T 3ezs_A 137 LTKENDFTPSLNEKE-LQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLA 215 (376)
T ss_dssp CCGGGTSCCCCCHHH-HHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHT
T ss_pred cCCCCCcchhHHhhh-ccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccc
Confidence 65221 566666 557899999999999999987 667788899999999999999665432 11
Q ss_pred ---CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHH
Q 013210 234 ---RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRA 310 (447)
Q Consensus 234 ---~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~ 310 (447)
..+.++++.|+||.+|++|.|+ ||+++++++++.+....... ....+.+.+.++..++...+.+....+++.+++
T Consensus 216 ~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 293 (376)
T 3ezs_A 216 GNEAFKNVLVIHSLSKRSSAPGLRS-GFIAGDSRLLEKYKAFRAYL-GYTSANAIQKASEAAWLDDRHAEFFRNIYANNL 293 (376)
T ss_dssp TCTTCTTEEEEEESTTTTTCGGGCC-EEEEECHHHHHHHHHHHTTT-CCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred cccccCcEEEEecchhccCCcccee-EEEeeCHHHHHHHHHHHhhh-cCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3578899999999999899998 99999999998887765421 122233333344444444444566667788888
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
+++.+.|+ +.. .| ..|.++++.+++ ...+.+.|.. +.| +.++.|..+..
T Consensus 294 ~~l~~~l~--~~~--~~-------------------~~~~~~~~~~~~---~~~~~~~l~~--~~g-i~v~~g~~~~~-- 342 (376)
T 3ezs_A 294 KLARKIFK--NTL--IY-------------------PYSFYVYLPVQN---GENFAKTLYQ--NEG-IITLPALYLGR-- 342 (376)
T ss_dssp HHHHHHST--TCC--CC-------------------SBSSEEEEECSC---HHHHHHHHHH--HHC-CBCEEGGGGCS--
T ss_pred HHHHHHhc--CCC--CC-------------------CcceEEEEECCC---HHHHHHHHHH--hCC-EEEeCcHHhCC--
Confidence 88888886 322 22 256689999873 4456666653 123 56666632210
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
. ...++.+|||++ . +++.++.+.++|.++
T Consensus 343 ----~-------------~~~~~~iRis~~-~--~~~~i~~~l~~l~~~ 371 (376)
T 3ezs_A 343 ----N-------------RIGADYVRLALV-Y--DTPLLEKPLEIIETY 371 (376)
T ss_dssp ----T-------------TTTTTEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred ----C-------------CCCCCeEEEEEc-C--CHHHHHHHHHHHHHH
Confidence 0 123588999998 5 455566666665544
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=241.36 Aligned_cols=289 Identities=16% Similarity=0.180 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|+++ | .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 77 ~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v~~ 151 (407)
T 2zc0_A 77 IPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFE-----QLGAKIEGVPV 151 (407)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEccc
Confidence 468899999988 7 3569999999999999999999999999999999999877763 25777777765
Q ss_pred C----CHHHHHHhhc----c-CCceEEE-EEcCCCCCccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCC------cc
Q 013210 173 S----DHEMVNSAIV----Q-GRTKVLY-FESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PA 233 (447)
Q Consensus 173 ~----d~~~l~~~i~----~-~~t~lV~-i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~------~~ 233 (447)
+ |+++|+++++ . +++++|+ +++|+||||.+.|++ +|+++|++||+++|+|++|+.+.+. ..
T Consensus 152 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 231 (407)
T 2zc0_A 152 DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLK 231 (407)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGG
T ss_pred CCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChh
Confidence 3 8999999983 2 2788874 689999999999876 9999999999999999999655431 11
Q ss_pred CC---CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC----CcHHHHHHHH
Q 013210 234 RL---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGLRMKEH 306 (447)
Q Consensus 234 ~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~----~~l~~~~~~~ 306 (447)
.+ +.++++.|+||+++ +|.|+ |++++++++++.+....... ...++.+.+.++...+... ..+....+++
T Consensus 232 ~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 308 (407)
T 2zc0_A 232 ALDNEGRVIVAGTLSKVLG-TGFRI-GWIIAEGEILKKVLMQKQPI-DFCAPAISQYIALEYLKRGYFEKYHLEGALLGY 308 (407)
T ss_dssp GGCSSCCEEEEEESTTTTC-TTSCC-EEEECCHHHHHHHHHHHTTT-TSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHH
T ss_pred hcCCCCCEEEEcccccccC-CCcce-EEEecCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 22 56789999999999 89887 99999999988887765422 1222334444444444332 2233455667
Q ss_pred HHHHHHHHHHHHhC-C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccC
Q 013210 307 CHRALIFARRMKKL-G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 307 ~~~~~~l~~~L~~~-~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
.++++++.+.|++. + ..+..|. .|.++++.++...+...+.+.|... +| +.+..|.
T Consensus 309 ~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~l~~~--~g-i~v~~g~ 366 (407)
T 2zc0_A 309 KEKRDIMLKALENHLPNAEFTKPI-------------------AGMFVMFFLPEGADGISFANELMER--EG-VVVVPGK 366 (407)
T ss_dssp HHHHHHHHHHHHHHCTTSCBCCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHH--TC-EECBCSG
T ss_pred HHHHHHHHHHHHHhCCCCEEecCC-------------------CcEEEEEEcCCCCCHHHHHHHHHHh--CC-eEEECch
Confidence 88889999999873 3 3433222 4568999986422345677777652 24 4555552
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHHh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~~ 439 (447)
.+ .. .+..++.+|||++ . +++++.++.|.++++++
T Consensus 367 ~~--------~~-----------~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 367 PF--------YT-----------DESGKNAIRLNFS-RPSKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp GG--------CS-----------SSCCTTEEEEECS-SSCTTHHHHHHHHHHHHHHHH
T ss_pred hc--------cC-----------CCCCCCeEEEEeC-CCCHHHHHHHHHHHHHHHHHH
Confidence 21 10 0112578999999 5 34455555555555443
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=245.22 Aligned_cols=289 Identities=15% Similarity=0.191 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHh----C---C--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----G---T--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g---~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|+++ | . +.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++
T Consensus 87 ~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~ 161 (425)
T 1vp4_A 87 DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFR-----QYLANFVVVP 161 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEEEEE
T ss_pred CHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEEec
Confidence 467888888888 7 3 459999999999999999999999999999999999887763 2577777766
Q ss_pred CC----CHHHHHHhhcc-------CCceEEE-EEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----
Q 013210 172 IS----DHEMVNSAIVQ-------GRTKVLY-FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----- 231 (447)
Q Consensus 172 ~~----d~~~l~~~i~~-------~~t~lV~-i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~----- 231 (447)
.+ |+++|++++++ .++++|+ +++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+.
T Consensus 162 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~ 241 (425)
T 1vp4_A 162 LEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD 241 (425)
T ss_dssp EETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC
T ss_pred cCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCc
Confidence 53 89999998833 2788985 7899999999987 568899999999999999999665432
Q ss_pred -cc---CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC---CcHHHHHH
Q 013210 232 -PA---RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMK 304 (447)
Q Consensus 232 -~~---~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~~~~ 304 (447)
.. ..+.++++.|+||+++ +|.|+ ||+++++++++.+....... ....+.+.+.++..++... +.+....+
T Consensus 242 ~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 318 (425)
T 1vp4_A 242 PIFKIGGPERVVLLNTFSKVLA-PGLRI-GMVAGSKEFIRKIVQAKQSA-DLCSPAITHRLAARYLERYDLLEQLKPTIE 318 (425)
T ss_dssp CHHHHHCTTTEEEEEESTTTTC-GGGCE-EEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHSCHHHHTHHHHH
T ss_pred CHHHhCCCCCEEEEeccccccc-cccce-EEEeeCHHHHHHHHHHhhhh-cCCCCHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11 1257899999999999 99998 99999999988887655422 1223334444444444332 22445566
Q ss_pred HHHHHHHHHHHHHHhC-----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013210 305 EHCHRALIFARRMKKL-----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA 379 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~-----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~ 379 (447)
++.++++++.+.|++. +..+..|. .|.++++.++...+...+.+.|... | +.
T Consensus 319 ~~~~~~~~l~~~L~~~~~~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~l~~~l~~~---g-i~ 375 (425)
T 1vp4_A 319 LYRRKRTVMLNALEEYFSDIPGVKWVKSE-------------------GGLFIWLTLPEGFDTWEMFEYAKRK---K-VF 375 (425)
T ss_dssp HHHHHHHHHHHHHHHHSTTSTTCEECCCS-------------------BSSEEEEECCTTCCTTTTHHHHHHH---T-EE
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEecCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---C-CE
Confidence 6788899999999874 34443332 4668999987322234566666542 3 45
Q ss_pred ccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHhh
Q 013210 380 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 380 vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~~ 440 (447)
+..|..+ .. .+..++.+|||++ .. ++++.++.|.++++++.
T Consensus 376 v~~g~~f--------~~-----------~~~~~~~iRis~~-~~~~e~i~~~l~~l~~~l~~~~ 419 (425)
T 1vp4_A 376 YVPGRVF--------KV-----------YDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLEYG 419 (425)
T ss_dssp CEEGGGG--------CT-----------TCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred EECchhh--------cC-----------CCCCCCeEEEEeC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 5555221 10 0112578999999 63 34445555555555544
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=242.48 Aligned_cols=284 Identities=15% Similarity=0.118 Sum_probs=198.2
Q ss_pred HHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.++++.+|++++ .+.+++|+||++|+++++++++++||+|+++.|.|+++...+. ..|.++..++.+
T Consensus 61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~ 135 (377)
T 3fdb_A 61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLS-----ATQREGIFIDAT 135 (377)
T ss_dssp CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHH-----HHTCCEEEEECT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEEccCC
Confidence 456777777765 4569999999999999999999999999999999999887763 257788888876
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----cC------CCC
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----AR------LGA 237 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~----~~------~g~ 237 (447)
|+++|++++ ++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+.. .. .+.
T Consensus 136 ~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 214 (377)
T 3fdb_A 136 GGINLHDVEKGF-QAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASV 214 (377)
T ss_dssp TSCCHHHHHHHH-HTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHH
T ss_pred CCCCHHHHHHHh-ccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCc
Confidence 999999999 667999999999999999986 6677888999999999999996544322 11 245
Q ss_pred eEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHHHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~~ 315 (447)
++++.|+||.+|++|.|+ ||++. ++++++.+...... .....+.+.+.++..++... +++..+.+++.++++++.+
T Consensus 215 ~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 292 (377)
T 3fdb_A 215 CITITAPSKAWNIAGLKC-AQIIFSNPSDAEHWQQLSPV-IKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLH 292 (377)
T ss_dssp EEEEECSTTTTTCGGGCC-EEEECCSHHHHHHHHHSCHH-HHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeChHhccCcchhh-eEEEeCCHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999998 87665 78888888765441 11223333333334444332 3356677788999999999
Q ss_pred HHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccc
Q 013210 316 RMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 393 (447)
Q Consensus 316 ~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a 393 (447)
.|++ . +..+..|. .+.++++.++.......+...+... .| +.++.|..+..
T Consensus 293 ~L~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~v~~g~~~~~----- 345 (377)
T 3fdb_A 293 EIPKRIPGAKITPMQ-------------------ATYLMWIDFRDTTIEGSPSEFFIEK--AK-VAMNDGAWFGE----- 345 (377)
T ss_dssp HHHHHSTTCEECCCS-------------------BCSEEEEECTTSCCCSCHHHHHHHH--HC-EECEEGGGGCG-----
T ss_pred HHHhhCCCceEecCC-------------------eeEEEEEECcccCCCHHHHHHHHHh--CC-EEecCChhccC-----
Confidence 9988 4 44554332 3446688887421012334443321 23 45555532110
Q ss_pred cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 394 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 394 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..++.+|||++ . +++.++...++|.++
T Consensus 346 ----------------~~~~~~Ris~~-~--~~e~i~~~l~~l~~~ 372 (377)
T 3fdb_A 346 ----------------DGTGFCRLNFA-T--SREVLEEAIDRMAKA 372 (377)
T ss_dssp ----------------GGTTEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred ----------------CCCCEEEEEeC-C--CHHHHHHHHHHHHHH
Confidence 02578999999 5 344455554544443
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-28 Score=239.40 Aligned_cols=289 Identities=18% Similarity=0.209 Sum_probs=204.6
Q ss_pred hHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 100 TVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
...++++.+|+++|. +.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.+
T Consensus 75 ~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~ 149 (397)
T 2zyj_A 75 GYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFR-----LQGPRFLTVPAGEEGP 149 (397)
T ss_dssp CCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEETTEE
T ss_pred CCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEecCcCCCCC
Confidence 347899999999985 469999999999999999999999999999999999887763 257777776653
Q ss_pred CHHHHHHhhccCCceEEE-EEcCCCCCccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCC------ccCC------CC
Q 013210 174 DHEMVNSAIVQGRTKVLY-FESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PARL------GA 237 (447)
Q Consensus 174 d~~~l~~~i~~~~t~lV~-i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~------~~~~------g~ 237 (447)
|+++|++++++.++++|+ +++|+||||.+.|.+ +|+++|++||+++|+|++|+.+.+. ...+ +.
T Consensus 150 d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (397)
T 2zyj_A 150 DLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPG 229 (397)
T ss_dssp CHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCC
T ss_pred CHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCe
Confidence 899999999434788885 689999999998754 8999999999999999999655431 1222 34
Q ss_pred eEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC--CcHHHHHHHHHHHHHHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~ 315 (447)
++++.|+||+++ +|.|+ ||+++++++++.+....... ...++.+.+.++...+... +++....+++.++++++.+
T Consensus 230 ~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 306 (397)
T 2zyj_A 230 VIYLGSFSKVLS-PGLRV-AFAVAHPEALQKLVQAKQGA-DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLH 306 (397)
T ss_dssp EEEEEESTTTTC-GGGCC-EEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccc-cccee-EEEecCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999 89998 99999999988887655422 1223334444444444433 2345556677888999999
Q ss_pred HHHhC---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccc
Q 013210 316 RMKKL---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 392 (447)
Q Consensus 316 ~L~~~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~ 392 (447)
.|++. +..+..|. .|.++++.++...+...+.+.|... | +.+..|..+
T Consensus 307 ~L~~~~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~f------ 357 (397)
T 2zyj_A 307 ALDREVPKEVRYTRPK-------------------GGMFVWMELPKGLSAEGLFRRALEE---N-VAFVPGGPF------ 357 (397)
T ss_dssp HHHHHSCTTSEECCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHT---T-EEEEESGGG------
T ss_pred HHHHHCCCCeEEccCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---C-CEEechHHh------
Confidence 99874 34544332 4568999987422345677777652 3 455545221
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHh
Q 013210 393 GSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRM 439 (447)
Q Consensus 393 a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~ 439 (447)
.. .+..++.+|||++ .. ++++.++.|.++++++
T Consensus 358 --~~-----------~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 358 --FA-----------NGGGENTLRLSYA-TLDREGIAEGVRRLGRALKGL 393 (397)
T ss_dssp --CT-----------TSCCTTEEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred --cC-----------CCCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 00 0113578999999 64 2334444444444443
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=241.55 Aligned_cols=286 Identities=16% Similarity=0.163 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 101 VLNLSRQMAALEG----------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 101 ~~~l~~~ia~l~g----------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
..++++.+|++++ .+.+++|+|+++++.+++++++++||+|+++.|+|+++...+ . ...|.++..+
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~---~-~~~g~~~~~v 160 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDL---R-WRTGVQLIPI 160 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHT---T-TTTCCEEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHH---H-HhcCCEEEEe
Confidence 5789999999876 356999999999999999999999999999999999886543 1 2268888888
Q ss_pred CCC-------CHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC----
Q 013210 171 DIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---- 231 (447)
Q Consensus 171 ~~~-------d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---- 231 (447)
+.+ |+++|+++++. +++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+.
T Consensus 161 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~ 240 (428)
T 1iay_A 161 HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQF 240 (428)
T ss_dssp CCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCC
T ss_pred ecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCc
Confidence 753 78999988832 37899999999999999999 899999999999999999999654332
Q ss_pred --ccCC--C-------Ce--EEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC
Q 013210 232 --PARL--G-------AD--VVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 297 (447)
Q Consensus 232 --~~~~--g-------~d--i~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~ 297 (447)
...+ . .| +++.|+||.+|++|.|+ |+++. ++++++.+..... ...++.+.+.++..++....
T Consensus 241 ~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~l~~~~ 316 (428)
T 1iay_A 241 VSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRV-GIIYSFNDDVVNCARKMSS---FGLVSTQTQYFLAAMLSDEK 316 (428)
T ss_dssp CCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCE-EEEEESCHHHHHHHHHHHT---TSCCCHHHHHHHHHHTTCHH
T ss_pred cCHHHhccccccccCCCCcEEEEecchhhcCCCCceE-EEEEeCCHHHHHHHHHHHh---cccCCHHHHHHHHHHhcChH
Confidence 1111 1 45 89999999999999998 88877 6788887775543 12233333333333333322
Q ss_pred ----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------HHHHHHHH
Q 013210 298 ----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EKANRLMN 367 (447)
Q Consensus 298 ----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------~~~~~l~~ 367 (447)
.+....+++.++++++.+.|++++.++..+ ..|.++++.++.. .....+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~l~~ 377 (428)
T 1iay_A 317 FVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKN-------------------NAGLFCWMDLRPLLRESTFDSEMSLWR 377 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC-------------------SSSSEEEEECGGGCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-------------------CeeEEEEEechhhcCCCchhHHHHHHH
Confidence 234456667888999999998876544322 1355888998642 23456777
Q ss_pred HhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 368 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 368 ~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.|... +| +.+..|..+ . ...++++|||++ . .+++.++.+.++|+++
T Consensus 378 ~l~~~--~g-i~v~~~~~~--------~-------------~~~~~~iRis~~-~-~~~e~i~~~~~~l~~~ 423 (428)
T 1iay_A 378 VIIND--VK-LNVSPGSSF--------E-------------CQEPGWFRVCFA-N-MDDGTVDIALARIRRF 423 (428)
T ss_dssp HHHHT--SC-EECEEGGGG--------T-------------CSSSSEEEEECS-S-SCHHHHHHHHHHHHHH
T ss_pred HHHHh--CC-EEEeCchhh--------C-------------CCCCCEEEEEEe-c-CCHHHHHHHHHHHHHH
Confidence 77642 24 455544221 0 011478999999 5 3455566666666554
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=245.11 Aligned_cols=284 Identities=15% Similarity=0.117 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHh----CC-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE----GT-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~----g~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|+++ |. +.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++
T Consensus 87 ~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~ 161 (404)
T 2o1b_A 87 KEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVL-----LADGKPVPLN 161 (404)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHH-----HTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HCCCEEEEec
Confidence 467888888887 75 469999999999999999999999999999999999987763 2577777766
Q ss_pred CC------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----CccCC--
Q 013210 172 IS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPARL-- 235 (447)
Q Consensus 172 ~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~~~-- 235 (447)
.+ |+++|++++ ++++++|++++|+||||.+.| +++|+++|+++|+++|+|++|+.+.+ +...+
T Consensus 162 ~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 240 (404)
T 2o1b_A 162 LEPPHYLPDWSKVDSQI-IDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASEN 240 (404)
T ss_dssp CCTTTCCCCGGGSCHHH-HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTT
T ss_pred cCcccCcCCHHHHHHhh-ccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC
Confidence 42 678888888 567899999999999999986 77899999999999999999965533 22232
Q ss_pred --CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHHHHHH
Q 013210 236 --GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALI 312 (447)
Q Consensus 236 --g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~~~ 312 (447)
+.++++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++.. .+++....+++.+++++
T Consensus 241 ~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (404)
T 2o1b_A 241 GKDVAIEIYSLSKGYNMSGFRV-GFAVGNKDMIQALKKYQTHT-NAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDR 318 (404)
T ss_dssp HHHHEEEEEESTTTTTCGGGCC-EEEEECHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecchhccCchhhe-EeEecCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 46899999999999899998 99999999998887655421 122333333333334433 23355566678889999
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccc
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 392 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~ 392 (447)
+.+.|++++..+..|. .|.++++.++...+...+.+.|.. +.| +.+..|..+
T Consensus 319 l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~l~~~l~~--~~g-i~v~~g~~f------ 370 (404)
T 2o1b_A 319 FEAMLAKADLPFVHAK-------------------GGIYVWLETPPGYDSEQFEQFLVQ--EKS-ILVAPGKPF------ 370 (404)
T ss_dssp HHHHHHHTTCCEECCC-------------------BSSEEEEECCTTCCHHHHHHHHHH--HHC-EECEESGGG------
T ss_pred HHHHHHhcCCeecCCC-------------------cceEEEEeCCCCCCHHHHHHHHHH--HCC-EEEeCchhh------
Confidence 9999998866554322 344788998732224556666542 123 455555221
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 393 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 393 a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.. ..++.+|||++ . +++.++.+.+.|.+
T Consensus 371 --~~-------------~~~~~iRis~~-~--~~e~l~~~l~~l~~ 398 (404)
T 2o1b_A 371 --GE-------------NGNRYVRISLA-L--DDQKLDEAAIRLTE 398 (404)
T ss_dssp --CG-------------GGTTEEEEECC-S--CTTHHHHHHHHHHG
T ss_pred --Cc-------------CCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence 00 02478999999 6 23444444444443
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=238.60 Aligned_cols=272 Identities=15% Similarity=0.218 Sum_probs=202.0
Q ss_pred HHHHHHHHHH------hCC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAAL------EGT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l------~g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.++++.+|++ .+. +.+++|+|+++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++.+
T Consensus 72 ~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~~v~~~ 146 (369)
T 3cq5_A 72 VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAK-----GTHTEFIAVSRG 146 (369)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHH-----HTTCEEEEEECC
T ss_pred HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEecCC
Confidence 5899999998 443 569999999999999999999999999999999999887663 257777777643
Q ss_pred -----CHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC--Ccc----CCC-CeEE
Q 013210 174 -----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPA----RLG-ADVV 240 (447)
Q Consensus 174 -----d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~--~~~----~~g-~di~ 240 (447)
|+++|++++ ++ ++++|++++|+||||.+.|++++.++|+.+++++|+|++|+.+.. +.. ..+ .+++
T Consensus 147 ~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~ 225 (369)
T 3cq5_A 147 ADFRIDMDVALEEI-RAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVV 225 (369)
T ss_dssp TTSSCCHHHHHHHH-HHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEE
T ss_pred cCCCCCHHHHHHHh-hccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEE
Confidence 789999998 55 789999999999999999999999999999999999999955442 222 235 7899
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
+.|+||++|++|.|+ ||++.++++++.+...... ...+.+.+.++..++...+++....+++.++++++.+.|++.
T Consensus 226 ~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 301 (369)
T 3cq5_A 226 SRTMSKAFDFAGGRL-GYFVANPAFIDAVMLVRLP---YHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL 301 (369)
T ss_dssp EEESSSTTSCGGGCC-EEEEECTHHHHHHHTTSCT---TCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred EEechHhcCCcccce-EEEEeCHHHHHHHHHcCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999889998 9999999888887754431 223333333333444433345566777889999999999876
Q ss_pred CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCC
Q 013210 321 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 400 (447)
Q Consensus 321 ~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~ 400 (447)
+..+. |. .|+++++.++ .+...+.+.|.. .| +.+..|
T Consensus 302 g~~~~-~~-------------------~~~~~~~~~~--~~~~~l~~~l~~---~g-i~v~~~----------------- 338 (369)
T 3cq5_A 302 GYAVV-PS-------------------ESNFVFFGDF--SDQHAAWQAFLD---RG-VLIRDV----------------- 338 (369)
T ss_dssp TCEEE-CC-------------------SSSEEEEECC--SSHHHHHHHHHH---TT-EECBCC-----------------
T ss_pred CCEEC-CC-------------------CCeEEEEECC--CCHHHHHHHHHH---CC-EEEEEC-----------------
Confidence 66554 32 3558888886 124566666654 23 343333
Q ss_pred CHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 401 NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 401 ~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+ .++.+|||++ . ++.++.+.++|+++
T Consensus 339 --------~-~~~~iRis~~-~---~~~i~~~~~~l~~~ 364 (369)
T 3cq5_A 339 --------G-IAGHLRTTIG-V---PEENDAFLDAAAEI 364 (369)
T ss_dssp --------S-CTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred --------C-CCCeEEEEeC-C---HHHHHHHHHHHHHH
Confidence 0 1468999999 3 45566666666654
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-27 Score=233.14 Aligned_cols=310 Identities=14% Similarity=0.096 Sum_probs=217.8
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhH
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGT 151 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~ 151 (447)
+.+.+.+.....++. .+.......+...++++.+|+++|.+..+++++|++++..++..+. .+||+|+++.++|+++
T Consensus 67 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~ 145 (401)
T 2bwn_A 67 AAMHEALEAVGAGSG-GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASM 145 (401)
T ss_dssp HHHHHHHHHHCSCCC-SBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHH
T ss_pred HHHHHHHHHcCCCCC-CcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHH
Confidence 555555543222222 2222223456778999999999998776666777778888877653 5899999999999999
Q ss_pred HHHHHhhcCcccCeeEEEeCCCCHHHHHHhhcc---CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013210 152 HALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL 228 (447)
Q Consensus 152 ~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~ 228 (447)
...+. ..|.++..++.+|+++|++.++. +++++|++++|+||||.+.|+++|.++|++||+++|+|++|+..
T Consensus 146 ~~~~~-----~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g 220 (401)
T 2bwn_A 146 IEGIK-----RNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVG 220 (401)
T ss_dssp HHHHH-----HSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred HHHHH-----HcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEecccccc
Confidence 87763 26888999998899999988832 57999999999999999999999999999999999999999522
Q ss_pred CCCc--------cCC--CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCc-cHHHHHHHHccCC
Q 013210 229 VLSP--------ARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM-NPKVAFELSERIP 297 (447)
Q Consensus 229 ~~~~--------~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~a~~~~~~~~ 297 (447)
.+.+ ..+ +.|+++.|+||.+|++| ||+++++++++.+...........+... .+.++..++..+.
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 296 (401)
T 2bwn_A 221 MYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG----GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK 296 (401)
T ss_dssp TSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC----EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT
T ss_pred ccCCCCceeeeccCccccCcEEEeechhhccCCC----CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH
Confidence 2211 111 35899999999999765 8999999888877654332211222222 2222233333333
Q ss_pred cH--HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccc
Q 013210 298 HL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQ 374 (447)
Q Consensus 298 ~l--~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~-~~~~ 374 (447)
.. ....+++.++++++.+.|++.+.++..| .|++++|.++.......+.+.|. .
T Consensus 297 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~L~~~--- 353 (401)
T 2bwn_A 297 TAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH--------------------GSHIVPVVIGDPVHTKAVSDMLLSD--- 353 (401)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--------------------SSSCEEEECCCHHHHHHHHHHHHHH---
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHCCCcccCC--------------------CCCeEEEEeCChHHHHHHHHHHHhc---
Confidence 33 5667788999999999998875544322 23489999976545667777774 4
Q ss_pred cccccccccCccccccccccccCCCCCHHHHHhcCCC--CCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 375 FGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS--AGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 375 ~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~--~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.| +.+..+.. .+.+ .+.+|||++ ..++++.++.+.++|+++.
T Consensus 354 ~g-i~v~~~~~----------------------~~~~~~~~~iRis~~-~~~t~~~i~~~~~~l~~~~ 397 (401)
T 2bwn_A 354 YG-VYVQPINF----------------------PTVPRGTERLRFTPS-PVHDLKQIDGLVHAMDLLW 397 (401)
T ss_dssp HC-EECCEECT----------------------TTSCTTCCEEEECCC-TTSCHHHHHHHHHHHHHHC
T ss_pred CC-EEEeecCC----------------------CCCCCCCceEEEEee-CCCCHHHHHHHHHHHHHHH
Confidence 23 34433311 1121 358999999 8888888988888887764
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=244.25 Aligned_cols=289 Identities=20% Similarity=0.220 Sum_probs=205.2
Q ss_pred HHHHHHHHHHh----CC----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-
Q 013210 102 LNLSRQMAALE----GT----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI- 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g~----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~- 172 (447)
.++++.+|+++ |. +.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 98 ~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~ 172 (447)
T 3b46_A 98 PSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIE-----LCGGKVVYVPIN 172 (447)
T ss_dssp HHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEeCC
Confidence 57888888876 32 469999999999999999999999999999999999987763 25666655542
Q ss_pred ----------------CCHHHHHHhhccCCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013210 173 ----------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS-- 231 (447)
Q Consensus 173 ----------------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~-- 231 (447)
.|+++|++++ ++++++|++++|+||||.+. ++++|+++|++||+++|+|++|+.+.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~ 251 (447)
T 3b46_A 173 PPKELDQRNTRGEEWTIDFEQFEKAI-TSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS 251 (447)
T ss_dssp CCGGGGTSCBCSTTSEECHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC
T ss_pred CccccccccccccCcccCHHHHHHhh-ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC
Confidence 2789999999 67899999999999999997 4889999999999999999999655432
Q ss_pred ---ccC-----CCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc---CCcH
Q 013210 232 ---PAR-----LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER---IPHL 299 (447)
Q Consensus 232 ---~~~-----~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~---~~~l 299 (447)
... .++++++.|+||+++++|+|+ ||+++ ++++++.+....... ...++.+.+.++..++.. ..++
T Consensus 252 ~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ri-G~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~a~~~aL~~~~~~~~~ 329 (447)
T 3b46_A 252 FTRIATLSPEIGQLTLTVGSAGKSFAATGWRI-GWVLSLNAELLSYAAKAHTRI-CFASPSPLQEACANSINDALKIGYF 329 (447)
T ss_dssp CCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCC-EEEECSCHHHHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHHTHH
T ss_pred CcCHHHcCCCCCCcEEEEecCchhcCCcchhh-EEEEeCCHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHhCCcchHHH
Confidence 112 368999999999999999998 99999 999998887654421 123333444344334433 2335
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH---------------HHHHH
Q 013210 300 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE---------------EKANR 364 (447)
Q Consensus 300 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~---------------~~~~~ 364 (447)
....+++.++++++.+.|++++..+..|. .|.++++.++.. .....
T Consensus 330 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 390 (447)
T 3b46_A 330 EKMRQEYINKFKIFTSIFDELGLPYTAPE-------------------GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFR 390 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEECCS-------------------BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeecCCC-------------------eeEEEEEecccccCccccccccccccCCCHHH
Confidence 56677789999999999988776655432 466888888631 23456
Q ss_pred HHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 365 l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.+.|.. +.| +.+..|..+.. ... .+..++.+|||++ . .++.++...+.|.++
T Consensus 391 ~~~~l~~--~~g-V~v~pg~~f~~---~~~-------------~~~~~~~iRls~~-~--~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 391 ISHWLIN--ELG-VVAIPPTEFYI---KEH-------------EKAAENLLRFAVC-K--DDAYLENAVERLKLL 443 (447)
T ss_dssp HHHHHHH--HTC-EECBCGGGGSC---GGG-------------GGGGTTEEEEECC-S--CHHHHHHHHHHGGGG
T ss_pred HHHHHHH--hCC-EEEECchHhCC---CCc-------------cCCCCCEEEEEEe-C--CHHHHHHHHHHHHHH
Confidence 7766642 123 44444422110 000 0012578999999 5 355455555555443
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=238.41 Aligned_cols=212 Identities=17% Similarity=0.182 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHh------CC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE------GT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~------g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|+++ +. +.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.++..++.
T Consensus 80 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~ 154 (406)
T 1xi9_A 80 LPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVK-----FYGGKPVEYRT 154 (406)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHH-----HcCCEEEEeec
Confidence 357888888876 22 569999999999999999999999999999999999887763 25777776654
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccC--C
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR--L 235 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~--~ 235 (447)
+ |+++|++++ ++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+. ... .
T Consensus 155 ~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 233 (406)
T 1xi9_A 155 IEEEDWQPDIDDIRKKI-TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK 233 (406)
T ss_dssp EGGGTSEECHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCS
T ss_pred CCCcCCcCCHHHHHHhh-CcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCC
Confidence 2 899999999 678999999999999999986 899999999999999999999655431 112 2
Q ss_pred CC-eEEEeCCCccccCCCCeeEEEEE--cCh----HHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHH
Q 013210 236 GA-DVVVHSISKFISGGADIIAGAVC--GPA----NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHC 307 (447)
Q Consensus 236 g~-di~~~S~sK~~g~~g~~igG~l~--~~~----~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~ 307 (447)
+. |+++.|+||++|++|.|+ |+++ .++ ++++.+....... ...+.+.+.++..++... +.+....+++.
T Consensus 234 ~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 310 (406)
T 1xi9_A 234 DVPVIVMNGLSKVYFATGWRL-GYMYFVDPENKLSEVREAIDRLARIR--LCPNTPAQFAAIAGLTGPMDYLKEYMKKLK 310 (406)
T ss_dssp SSCEEEEEESTTTTCCGGGCC-EEEEEECTTCTTHHHHHHHHHHHHHT--CCSCSHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CceEEEEeccccccCCCccEE-EEEEEecCchhHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 56 899999999999899998 8888 888 8988887665422 233334444444445322 33555667788
Q ss_pred HHHHHHHHHHHhCC
Q 013210 308 HRALIFARRMKKLG 321 (447)
Q Consensus 308 ~~~~~l~~~L~~~~ 321 (447)
++++++.+.|++.+
T Consensus 311 ~~~~~l~~~L~~~~ 324 (406)
T 1xi9_A 311 ERRDYIYKRLNEIP 324 (406)
T ss_dssp HHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998873
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=246.15 Aligned_cols=260 Identities=15% Similarity=0.123 Sum_probs=184.1
Q ss_pred CchHHHHHHHHHHHh--------CCCeEEEeCChHHHHHHHHHHhcCCCC--------------eEEEe-CCCchhHHHH
Q 013210 98 NPTVLNLSRQMAALE--------GTEAAYCTASGMSAISSVLMQLCSSGG--------------HVVAA-RTLYGGTHAL 154 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~--------g~~~~~~tsggt~A~~~al~~l~~~gd--------------~Vi~~-~~~y~~~~~~ 154 (447)
.....++|+.+|+++ +.+.+++|+||++|+++++++++++|| +|+++ .|+|+++...
T Consensus 82 ~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~ 161 (444)
T 3if2_A 82 PQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDV 161 (444)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTC
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhc
Confidence 334578999999987 346799999999999999999988887 78876 8999988653
Q ss_pred HHh--hcCcccCeeEEEeCC----------CCHHHHHHh---hccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcC
Q 013210 155 LTH--FFPRACNITTTFVDI----------SDHEMVNSA---IVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKG 216 (447)
Q Consensus 155 ~~~--~~~~~~g~~~~~v~~----------~d~~~l~~~---i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~g 216 (447)
+.. .+.. .|..+..++. .|+++|+++ + ++++++|++++|+||||.++| +++|+++|++||
T Consensus 162 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~ 239 (444)
T 3if2_A 162 HVEGQHFAA-VLPHIDEVTHDGEEGFFKYRVDFEALENLPALK-EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYD 239 (444)
T ss_dssp CSSSCCEEE-CCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH-TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred ccccchhhc-cCceEEecccccccCccccCCCHHHHHHHHHhc-CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCC
Confidence 210 1122 4666666552 389999988 5 678999999999999999998 888999999999
Q ss_pred CEEEEeCCCCCC----CCC---ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHH
Q 013210 217 VTVVVDNTFSPL----VLS---PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 289 (447)
Q Consensus 217 i~livD~~~~~~----~~~---~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a 289 (447)
+++|+|++|+.+ .+. +...+.++++.|+||+ +++|.|+ ||++.++++++.+....... ...++...+.++
T Consensus 240 ~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~a~ 316 (444)
T 3if2_A 240 IPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMRT-GIIVADAKVIEAVSAMNAVV-NLAPTRFGAAIA 316 (444)
T ss_dssp CCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGCC-EEEECCHHHHHHHHHHHHHH-HSSCCCHHHHHH
T ss_pred CEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCce-EEEEECHHHHHHHHHHHHhc-cCCCChHHHHHH
Confidence 999999999532 111 1224789999999997 7799998 99999999998887765522 133444444444
Q ss_pred HHHHccCCcH---HH-HHHHHHHHHHHHHHHHHhC-C---CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HH
Q 013210 290 FELSERIPHL---GL-RMKEHCHRALIFARRMKKL-G---LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EE 360 (447)
Q Consensus 290 ~~~~~~~~~l---~~-~~~~~~~~~~~l~~~L~~~-~---~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~ 360 (447)
...+...... .. ..+.+.++++.+.+.|++. + ..+..|. .|.++++.++. ..
T Consensus 317 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-------------------~g~~~~~~~~~~~~ 377 (444)
T 3if2_A 317 TPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE-------------------GAIFLWLWFKDLPI 377 (444)
T ss_dssp HHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC-------------------BSSEEEEEETTCSS
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC-------------------ccEEEEEEcCCCCC
Confidence 4444433221 12 3345677778888888663 2 2333332 46688999874 22
Q ss_pred HHHHHHHHhhcccccccccccccCc
Q 013210 361 KANRLMNYLQNYAQFGFMAVSLGYY 385 (447)
Q Consensus 361 ~~~~l~~~l~~~~~~g~~~vs~G~~ 385 (447)
....+...|... | +.++.|..
T Consensus 378 ~~~~l~~~l~~~---g-i~v~~g~~ 398 (444)
T 3if2_A 378 STLDLYERLKAK---G-TLIVPSEY 398 (444)
T ss_dssp CHHHHHHHHHHT---T-EECEEGGG
T ss_pred CHHHHHHHHHHC---C-eEEecchh
Confidence 356677777653 4 57776643
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=235.46 Aligned_cols=276 Identities=15% Similarity=0.164 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-CCHHH
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-SDHEM 177 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-~d~~~ 177 (447)
..++++.+|+++|.+ .+++|+||++|+.++++++. ||+|+++.|+|+++...+. ..|.++.+++. ++.+.
T Consensus 52 ~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~ 124 (350)
T 3fkd_A 52 AGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACR-----MYEHEVCFYPSNEDIGE 124 (350)
T ss_dssp CHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHH-----HTTCEEEEEETTSCGGG
T ss_pred HHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHH-----HcCCeEEEEecCCcccc
Confidence 368999999999874 69999999999999999887 9999999999999887763 26889999887 54332
Q ss_pred HHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcC-CEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCcccc
Q 013210 178 VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFIS 249 (447)
Q Consensus 178 l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~g-i~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g 249 (447)
+..+++++|++++|+||||.++|+++|.++++.++ .++|+|++|..+.... ...+.++++.|+||.+|
T Consensus 125 ----~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 200 (350)
T 3fkd_A 125 ----ADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYG 200 (350)
T ss_dssp ----SCCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHS
T ss_pred ----CccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhcc
Confidence 21267999999999999999999999999998875 7999999996554321 12367799999999999
Q ss_pred CCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCC
Q 013210 250 GGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPG 328 (447)
Q Consensus 250 ~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~ 328 (447)
++|.|+ ||++.++++++.+...+.. ...+.+.+.++..++.....+.++++++.++++++.+.|++++ ..+ .|.
T Consensus 201 ~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~ 275 (350)
T 3fkd_A 201 IPGLRI-GYIVANKDFMKRVAAFSTP---WAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVEV-HPS 275 (350)
T ss_dssp CGGGCC-EEEECCHHHHHHHHTTCCT---TCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEEE-CCC
T ss_pred Ccchhe-EeEEeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE-CCC
Confidence 999998 9999999999888765541 2223333344444444433233344555588899999998874 344 222
Q ss_pred CCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhc
Q 013210 329 LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 408 (447)
Q Consensus 329 ~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~ 408 (447)
.|+++++.++.. ....+.+.|.. +.| +.++.|..+ .
T Consensus 276 -------------------~~~~~~~~~~~~-~~~~l~~~L~~--~~g-i~v~~g~~f--------~------------- 311 (350)
T 3fkd_A 276 -------------------GTTFFLLRLKKG-TAAELKKYMLE--EYN-MLIRDASNF--------R------------- 311 (350)
T ss_dssp -------------------SSSEEEEEESSS-CHHHHHHHHHH--TTC-EECEECTTS--------T-------------
T ss_pred -------------------CCcEEEEECCCC-CHHHHHHHHHH--HCC-EEEEeCccC--------C-------------
Confidence 456888898743 35677777765 123 566666332 1
Q ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 409 GISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 409 g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+..++.+|||++ . .+.++.|.++|+++.
T Consensus 312 ~~~~~~iRis~~-~---~~~~~~l~~al~~~~ 339 (350)
T 3fkd_A 312 GLDESYVRITTQ-R---PAQNQLFIKALETFL 339 (350)
T ss_dssp TCCTTEEEEECC-C---HHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcC-C---HHHHHHHHHHHHHHH
Confidence 123689999999 3 344566666666664
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=236.42 Aligned_cols=285 Identities=14% Similarity=0.074 Sum_probs=199.9
Q ss_pred chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 99 PTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
+...++++.+|+++|.+ .+++|+||++|+..++++++++||+|+++.++|+++. .. ..... .|.++.+++.+
T Consensus 34 ~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~~~~ 110 (352)
T 1iug_A 34 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER-FY-EIALE-AGLVVERLDYPYGD 110 (352)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH-HH-HHHHH-TTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH-HH-HHHHH-cCCceEEEeCCCCC
Confidence 45689999999999986 6999999999999999999999999999999999875 22 22222 58888887764
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc--CCEEEEeCCCC--CCCCCccCCCCeEEEeCCCcc
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFS--PLVLSPARLGADVVVHSISKF 247 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~ 247 (447)
|+++|++ +++++|++++++||||.+.|+++|.++|++| |+++|+|++|+ ....+...+++|+++.|+||+
T Consensus 111 ~~d~~~l~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~ 186 (352)
T 1iug_A 111 TPRPEDVAK----EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKG 186 (352)
T ss_dssp CCCTTTSCC----SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSST
T ss_pred CCCHHHHhc----cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCccc
Confidence 4555443 5789999999999999999999999999999 99999999993 233343445789999999995
Q ss_pred c-cCCCCeeEEEEEcChHHHHH---------HHHHhhh--hhhhcCCCc-cHHH-HHHHHccC-CcHHHHHHHHHHHHHH
Q 013210 248 I-SGGADIIAGAVCGPANLVNS---------MMDLHQG--ALMLLGPTM-NPKV-AFELSERI-PHLGLRMKEHCHRALI 312 (447)
Q Consensus 248 ~-g~~g~~igG~l~~~~~~~~~---------l~~~~~~--~~~~~g~~~-~~~~-a~~~~~~~-~~l~~~~~~~~~~~~~ 312 (447)
+ ++.| + |+++.++++++. +...... .....++.. .... +..++..+ +.+....+++.+++++
T Consensus 187 ~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~ 263 (352)
T 1iug_A 187 LMCPPG--L-GFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNAL 263 (352)
T ss_dssp TCCCSC--E-EEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred ccCCCc--e-eEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4444 5 888888887654 2211000 011222221 1222 22222221 2356677788999999
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccc
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS 392 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~ 392 (447)
+.+.|++.+.++..|. ..+.+++|.++.......+.+.|... | +.++.|.. +
T Consensus 264 l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~~~~------~ 315 (352)
T 1iug_A 264 LYGVGEEGGLRPVPKR------------------FSPAVAAFYLPEGVPYARVKEAFAQR---G-AVIAGGQG------P 315 (352)
T ss_dssp HHHHHHHTTCEESCSS------------------BCTTCEEEECCTTCCHHHHHHHHHTT---T-EECEECCG------G
T ss_pred HHHHHHHCCCcccccc------------------cCCeEEEEEcCCCCCHHHHHHHHHHC---C-EEEEeCCC------c
Confidence 9999988766654331 13558999987322356677777653 3 45555521 0
Q ss_pred ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 393 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 393 a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..++.+|||++ ..++++.++.+.++|+++
T Consensus 316 -----------------~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 344 (352)
T 1iug_A 316 -----------------LKGKVFRLSLM-GAYDRYEALGVAGMFREV 344 (352)
T ss_dssp -----------------GTTTEEEECCC-SSCCHHHHHHHHHHHHHH
T ss_pred -----------------cCCCEEEEEcc-ccCCHHHHHHHHHHHHHH
Confidence 02478999999 777777777777777665
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=239.32 Aligned_cols=241 Identities=15% Similarity=0.155 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHhC--------------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCee
Q 013210 101 VLNLSRQMAALEG--------------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 166 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 166 (447)
..++++.+|++++ .+.+++|+||++|+.+++++++++||+|+++.|+|+++...+. ..|.+
T Consensus 77 ~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~ 151 (416)
T 1bw0_A 77 SPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCK-----AYGIG 151 (416)
T ss_dssp CHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCE
T ss_pred CHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHH-----HcCcE
Confidence 4678999999887 4569999999999999999999999999999999999887663 25777
Q ss_pred EEEeCC-------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013210 167 TTFVDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---- 232 (447)
Q Consensus 167 ~~~v~~-------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---- 232 (447)
+..++. .|+++|++++ ++++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+..
T Consensus 152 ~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 230 (416)
T 1bw0_A 152 MHFYNCRPENDWEADLDEIRRLK-DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPN 230 (416)
T ss_dssp EEEEEEEGGGTTEECHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTT
T ss_pred EEEeecCcccCCCCCHHHHHHHh-ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence 776653 2799999999 678999999999999999998 8999999999999999999996543221
Q ss_pred ------cCC---CCeEEEeCCCccccCCCCeeEEEEEcCh--HHHHHHH----HHhhhhhhhcCCCccHHHHHHHHccC-
Q 013210 233 ------ARL---GADVVVHSISKFISGGADIIAGAVCGPA--NLVNSMM----DLHQGALMLLGPTMNPKVAFELSERI- 296 (447)
Q Consensus 233 ------~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~--~~~~~l~----~~~~~~~~~~g~~~~~~~a~~~~~~~- 296 (447)
..+ +.++++.|+||.++++|.|+ ||+++++ ++++.+. .... .....+.+.+.++..++...
T Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~-G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~ 307 (416)
T 1bw0_A 231 ATFTSVADFETTVPRVILGGTAKNLVVPGWRL-GWLLYVDPHGNGPSFLEGLKRVGM--LVCGPCTVVQAALGEALLNTP 307 (416)
T ss_dssp CCCCCTTSSCCSCCEEEEEESTTTTSCGGGCC-EEEEEECTTCSCHHHHHHHHHHHH--HHTCSCHHHHHHHHHHHHSSC
T ss_pred CCccCHHHccCCCcEEEEecchhhCCCCCceE-EEEEeeCchhhHHHHHHHHHHHhc--cccCCCcHHHHHHHHHHhccc
Confidence 111 24688999999999999998 8887654 3444333 2211 11223333343444444432
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHh
Q 013210 297 -PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL 369 (447)
Q Consensus 297 -~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~l~~~l 369 (447)
..+....+++.++++++.+.|+++ +..+..|. .|.++++.++.. .....+...|
T Consensus 308 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l 368 (416)
T 1bw0_A 308 QEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR-------------------GAMYLMSRIDLEKYRDIKTDVEFFEKL 368 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC-------------------BTTEEEEEECGGGBSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC-------------------eeEEEEEeCCHHHcCCCCCHHHHHHHH
Confidence 335566777889999999999876 33443222 355788888521 1245566665
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-27 Score=237.25 Aligned_cols=272 Identities=18% Similarity=0.186 Sum_probs=188.1
Q ss_pred eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----CHHHHHHhhcc-------
Q 013210 116 AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ------- 184 (447)
Q Consensus 116 ~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~i~~------- 184 (447)
.+++|+|+++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.+ |+++|++++++
T Consensus 110 ~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~ 184 (425)
T 2r2n_A 110 DLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLH-----PLGCNIINVASDESGIVPDSLRDILSRWKPEDAK 184 (425)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHG-----GGTCEEEEECEETTEECHHHHHHHHTTSCSTTSS
T ss_pred cEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccc
Confidence 69999999999999999999999999999999999887762 368888777653 88999998831
Q ss_pred ----CCceEEEE-EcCCCCCccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCC------ccC---CCCeEEEeCCCcc
Q 013210 185 ----GRTKVLYF-ESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PAR---LGADVVVHSISKF 247 (447)
Q Consensus 185 ----~~t~lV~i-~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~------~~~---~g~di~~~S~sK~ 247 (447)
+++++|++ .+|+||||.+.+.+ +|+++|++||+++|+|++|+.+.+. ... .+.++++.|+||+
T Consensus 185 ~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~ 264 (425)
T 2r2n_A 185 NPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKI 264 (425)
T ss_dssp STTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTT
T ss_pred cccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhh
Confidence 46888877 68999999999755 9999999999999999999654332 122 2567999999999
Q ss_pred ccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC------CcHHHHHHHHHHHHHHHHHHHHhC-
Q 013210 248 ISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI------PHLGLRMKEHCHRALIFARRMKKL- 320 (447)
Q Consensus 248 ~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~------~~l~~~~~~~~~~~~~l~~~L~~~- 320 (447)
++ +|.|+ ||+++++++++.+....... ....+.+.+.++..++... +++....+++.++++.+.+.|+++
T Consensus 265 ~~-~GlRi-G~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 341 (425)
T 2r2n_A 265 IS-SGLRI-GFLTGPKPLIERVILHIQVS-TLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWL 341 (425)
T ss_dssp TC-STTCC-EEEEEEHHHHHHHHHHHHTT-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cc-Cccce-EEEecCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 98 99999 99999999988887665421 1223333333333333321 234445566788899999999874
Q ss_pred -CC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH-HHHHhhcccccccccccccCccccccccccccC
Q 013210 321 -GL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR-LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 321 -~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~-l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
+. .+..|. .|.++++.++....... +.+.|... | +.+..|..+.. .
T Consensus 342 ~~~~~~~~p~-------------------~g~~~~~~~~~~~~~~~~~~~~l~~~---g-v~v~pg~~f~~------~-- 390 (425)
T 2r2n_A 342 TGLAEWHVPA-------------------AGMFLWIKVKGINDVKELIEEKAVKM---G-VLMLPGNAFYV------D-- 390 (425)
T ss_dssp SSSEEECCCS-------------------BSSEEEEEETTCSCCHHHHHTHHHHT---T-EECEEGGGGSS------S--
T ss_pred CCCeEEeCCC-------------------ceEEEEEEeCCCCCHHHHHHHHHHHC---C-cEEechhhhcC------C--
Confidence 33 233332 56689999974211223 34455442 3 45555532110 0
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+...+.+|||++ .. +++.++.+.+.|.+
T Consensus 391 ----------~~~~~~~iRis~~-~~-~~~~i~~~~~~l~~ 419 (425)
T 2r2n_A 391 ----------SSAPSPYLRASFS-SA-SPEQMDVAFQVLAQ 419 (425)
T ss_dssp ----------TTSCCCEEEEECS-SC-CHHHHHHHHHHHHH
T ss_pred ----------CCCCCCEEEEEeC-CC-CHHHHHHHHHHHHH
Confidence 0012478999998 53 44444444444443
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-28 Score=234.42 Aligned_cols=283 Identities=19% Similarity=0.165 Sum_probs=194.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.++...++++.+|+++|.+.+++++||++|+.+++++++++||+|+++.|+|.+++... ... +..|.++.++ .+
T Consensus 36 ~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~-~~~g~~~~~v-~~~~~ 112 (347)
T 1jg8_A 36 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMA-VLSGVMPHPV-PGKNG 112 (347)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHH-HHTCCEEEEE-CEETT
T ss_pred CChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhcccc-chh-hccCeEEEEe-cCCCC
Confidence 45677899999999999999999999999999999999999999999999997654310 000 1257777776 32
Q ss_pred --CHHHHHHhhcc-----CCceEEEEEcCCCCC-ccccC---HHHHHHHHHhcCCEEEEeCCCCC--C---CCCccC--C
Q 013210 174 --DHEMVNSAIVQ-----GRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFSP--L---VLSPAR--L 235 (447)
Q Consensus 174 --d~~~l~~~i~~-----~~t~lV~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~~~--~---~~~~~~--~ 235 (447)
|+++|++++.. ++|++|++++|+||| |.+.| +++|.++|+++|+++|+|++|.. + ..++.. .
T Consensus 113 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~ 192 (347)
T 1jg8_A 113 AMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAG 192 (347)
T ss_dssp EECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHH
T ss_pred ccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcc
Confidence 89999999832 269999999999999 99987 46888999999999999998721 1 122222 2
Q ss_pred CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHH---HHHHccCCcHHHHHHHHHHHHHH
Q 013210 236 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA---FELSERIPHLGLRMKEHCHRALI 312 (447)
Q Consensus 236 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a---~~~~~~~~~l~~~~~~~~~~~~~ 312 (447)
+.|.++.|+||+++++ +||+++.++++++.+...+... ..+.......+ ...+.... .++++..+++++
T Consensus 193 ~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~ 264 (347)
T 1jg8_A 193 YADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKML--GGGMRQAGVLAAAGIIALTKMV---DRLKEDHENARF 264 (347)
T ss_dssp TCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHH--TCCCSSTHHHHHHHHHHHHHSS---TTHHHHHHHHHH
T ss_pred cccEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 5788888999999864 5567788998888877655421 11111222222 22222211 123444567788
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccc
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~ 391 (447)
+.+.|++++..+..+. ..|+++++.++. ..+...+.+.|... | +.++.+
T Consensus 265 l~~~L~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~~-------- 314 (347)
T 1jg8_A 265 LALKLKEIGYSVNPED------------------VKTNMVILRTDNLKVNAHGFIEALRNS---G-VLANAV-------- 314 (347)
T ss_dssp HHHHHHHHTCBCCGGG------------------CCSSEEEEECTTSSSCHHHHHHHHHHH---T-EECEEE--------
T ss_pred HHHHHHhcCceeccCC------------------CcceEEEEEcccccCCHHHHHHHHHHC---C-CEEecC--------
Confidence 8888877654432211 135688999873 22356777777642 3 343322
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.++.+|||++ ...+++.++.+.++|+++.
T Consensus 315 -------------------~~~~iRl~~~-~~~~~e~i~~~~~~l~~~l 343 (347)
T 1jg8_A 315 -------------------SDTEIRLVTH-KDVSRNDIEEALNIFEKLF 343 (347)
T ss_dssp -------------------ETTEEEEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred -------------------CCCeEEEEeC-CCCCHHHHHHHHHHHHHHH
Confidence 0357999998 7777777877777776653
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=233.96 Aligned_cols=270 Identities=17% Similarity=0.123 Sum_probs=188.8
Q ss_pred HH-HHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LN-LSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~-l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+ +++.+|+++ | .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 66 ~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~ 140 (390)
T 1d2f_A 66 NDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIE-----GNQRTVMPVAL 140 (390)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHH-----HCCCEEEEeec
Confidence 45 777777765 4 3569999999999999999999999999999999999887763 25777776654
Q ss_pred --------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccCC
Q 013210 173 --------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARL 235 (447)
Q Consensus 173 --------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~~ 235 (447)
.|+++|++++++.++++|++++|+||||.+.| +++|+++|++||+++|+|++|+.+.+. ...+
T Consensus 141 ~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 220 (390)
T 1d2f_A 141 EKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV 220 (390)
T ss_dssp EECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT
T ss_pred ccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHc
Confidence 38999999994348999999999999999987 889999999999999999999655332 1223
Q ss_pred C--C-eEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhh-hhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHH
Q 013210 236 G--A-DVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQ-GALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHR 309 (447)
Q Consensus 236 g--~-di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~-~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~ 309 (447)
. . |. +.|+||++|++|.|+ |+++.+ +++++.+..... .......+.+.+.++..++... +.+....+++.++
T Consensus 221 ~~~~~d~-~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 298 (390)
T 1d2f_A 221 ARGDWAL-LTSGSKSFNIPALTG-AYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDN 298 (390)
T ss_dssp CCSSEEE-EECSHHHHTCGGGCC-EEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chhhHhh-ccCccHhhcccChhh-eEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2 2 67 999999999899998 888874 788887766543 1111122223333333333322 2355566678889
Q ss_pred HHHHHHHHHh-CC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh-cccccccccccccCc
Q 013210 310 ALIFARRMKK-LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ-NYAQFGFMAVSLGYY 385 (447)
Q Consensus 310 ~~~l~~~L~~-~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~-~~~~~g~~~vs~G~~ 385 (447)
++++.+.|++ ++ ..+..|. .|.++++.++.. .+...+.+.|. .. | +.+..|..
T Consensus 299 ~~~l~~~L~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~l~~~~---g-i~v~~g~~ 355 (390)
T 1d2f_A 299 LTYIADKMNAAFPELNWQIPQ-------------------STYLAWLDLRPLNIDDNALQKALIEQE---K-VAIMPGYT 355 (390)
T ss_dssp HHHHHHHHHHHCSSCCCCCCS-------------------BCSEEEEECGGGCCCHHHHHHHHHHTT---C-EECEEGGG
T ss_pred HHHHHHHHHhhCCCCEEecCC-------------------ccEEEEEEccccCCCHHHHHHHHHHHc---C-EEeeCccc
Confidence 9999999987 53 3332211 234667888632 12456777776 32 3 45555522
Q ss_pred cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013210 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 423 (447)
Q Consensus 386 ~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~ 423 (447)
+. + ..++.+|||++ ..
T Consensus 356 f~----~-----------------~~~~~~Ris~~-~~ 371 (390)
T 1d2f_A 356 YG----E-----------------EGRGFVRLNAG-CP 371 (390)
T ss_dssp GC----G-----------------GGTTEEEEECC-SC
T ss_pred cC----C-----------------CCCCeEEEEec-CC
Confidence 10 0 12478999999 63
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=240.77 Aligned_cols=290 Identities=19% Similarity=0.227 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHhCC--------CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALEGT--------EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g~--------~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+|++++. +.+++|+||++|+.+++++++++||+|+++.++|+++...+. ..|.++..++.
T Consensus 81 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~ 155 (409)
T 2gb3_A 81 IWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAK-----IAGVKLIPVTR 155 (409)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HHTCEEEEEEC
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEecc
Confidence 46788888888742 569999999999999999999999999999999999887663 25778887776
Q ss_pred CC------HHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc-C-CC
Q 013210 173 SD------HEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA-R-LG 236 (447)
Q Consensus 173 ~d------~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~-~-~g 236 (447)
++ +++|++++ ++++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.+.+ ... . .+
T Consensus 156 ~~~~~~~~~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~ 234 (409)
T 2gb3_A 156 RMEEGFAIPQNLESFI-NERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESD 234 (409)
T ss_dssp CGGGTSCCCTTGGGGC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCT
T ss_pred CCCCCCccHHHHHHhh-CcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCC
Confidence 52 67888888 668999999999999999975 88999999999999999999955433 111 2 26
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-CcHHHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRALIFA 314 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~ 314 (447)
+|+++.|+||++|++|.|+ |+++.++ ++++.+....... ...+.+.+.++..++... ..+....+++.++++++.
T Consensus 235 ~~i~~~s~sK~~g~~G~r~-G~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~ 311 (409)
T 2gb3_A 235 KVVVIDSVSKKFSACGARV-GCLITRNEELISHAMKLAQGR--LAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVL 311 (409)
T ss_dssp TEEEEEESTTTTTCGGGCC-EEEECSCHHHHHHHHHHHHHS--CCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecchhccCCccceE-EEEEECcHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999899998 9999888 8888887665522 122333333344444332 234555677888999999
Q ss_pred HHHHhCCCee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcc---cccccccccccCcccccc
Q 013210 315 RRMKKLGLKV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNY---AQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 315 ~~L~~~~~~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~---~~~g~~~vs~G~~~s~~~ 390 (447)
+.|++.+..+ ..|. .|.++++.+++. +...+.+.|... ...| +.+..|..+
T Consensus 312 ~~L~~~g~~~~~~~~-------------------~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~g-i~v~~g~~f---- 366 (409)
T 2gb3_A 312 KKLEEHGLKRFTKPS-------------------GAFYITAELPVE-DAEEFARWMLTDFNMDGET-TMVAPLRGF---- 366 (409)
T ss_dssp HHHHHTTCCCBCCCS-------------------BSSEEEEECSSS-CHHHHHHHHHHSCCBTTEE-EECEEGGGG----
T ss_pred HHHHHcCceeeeCCC-------------------eeEEEEEEeCCC-CHHHHHHHHHhccccccCc-EEEeCchHh----
Confidence 9998876544 3221 345777788622 245666666542 0013 455544211
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~ 439 (447)
... .+..++.+|||++ . +++++.++.|.++++++
T Consensus 367 ----~~~----------~~~~~~~iRis~~-~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 367 ----YLT----------PGLGKKEIRIACV-LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp ----CSS----------TTTTSSEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred ----CCC----------CCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHh
Confidence 000 0123578999999 4 23444555555555554
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=239.84 Aligned_cols=291 Identities=13% Similarity=0.144 Sum_probs=205.9
Q ss_pred chHHHHHHHHHHHhCCCe---EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchh--HHHHHHhhcCcccCeeEEEeCCC
Q 013210 99 PTVLNLSRQMAALEGTEA---AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~---~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
...+++++.+++++|.+. +++|+||++|+.+++++++++||+|+++.++|++ +...+. . .|.++..++.+
T Consensus 46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~----~-~g~~~~~v~~~ 120 (411)
T 3nnk_A 46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIAR----R-CRAEVHTIEVP 120 (411)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH----H-TTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHH----H-cCCeEEEEecC
Confidence 456889999999998753 7889999999999999999999999999999987 444442 2 68888888765
Q ss_pred -----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCc
Q 013210 174 -----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISK 246 (447)
Q Consensus 174 -----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK 246 (447)
|+++|++++++.++++|++++|+||||.+.|+++|.++|++||+++|+|++++ ....+....++|+++.|+||
T Consensus 121 ~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K 200 (411)
T 3nnk_A 121 WGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQK 200 (411)
T ss_dssp TTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTT
T ss_pred CCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCcc
Confidence 89999999933489999999999999999999999999999999999999983 33455556689999999999
Q ss_pred cc-cCCCCeeEEEEEcChHHHHHHHHHhh---------------------------------hhhhhcCC-CccHHHHH-
Q 013210 247 FI-SGGADIIAGAVCGPANLVNSMMDLHQ---------------------------------GALMLLGP-TMNPKVAF- 290 (447)
Q Consensus 247 ~~-g~~g~~igG~l~~~~~~~~~l~~~~~---------------------------------~~~~~~g~-~~~~~~a~- 290 (447)
++ ++.| + |+++.++++++.+..... ......++ ......+.
T Consensus 201 ~l~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 277 (411)
T 3nnk_A 201 CLGGPSG--T-SPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGAR 277 (411)
T ss_dssp TTCCCSS--E-EEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHH
T ss_pred ccCCCCc--e-EEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHH
Confidence 74 5444 5 999999999888765330 00001111 11111121
Q ss_pred HHHccC-C-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013210 291 ELSERI-P-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368 (447)
Q Consensus 291 ~~~~~~-~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~ 368 (447)
.++... + .+....+++.++++++.+.|++.+.++..|.. ...+.+++|.++...+...+.+.
T Consensus 278 ~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~ 341 (411)
T 3nnk_A 278 ECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLK----------------HKMNNVLGVVIPQGINGDQARKL 341 (411)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG----------------GBCSSEEEEECCTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcc----------------cccccEEEEECCCCCCHHHHHHH
Confidence 222211 1 15567778889999999999988665543320 02456999998633235566666
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHhh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~~ 440 (447)
|... +| +.++.|.. ...++.+|||+ + ..++++.++.+.++|+++.
T Consensus 342 l~~~--~g-i~v~~g~~-----------------------~~~~~~iRi~~~~-~~~~~~~i~~~~~~l~~~l 387 (411)
T 3nnk_A 342 MLED--FG-IEIGTSFG-----------------------PLHGKVWRIGTMG-YNARKDCVMTTLSALEAVL 387 (411)
T ss_dssp HHHH--HS-EEEEECCG-----------------------GGTTTEEEEECCG-GGCSHHHHHHHHHHHHHHH
T ss_pred HHHh--cC-eEEeCccC-----------------------CCCCCEEEEeCcc-CcCCHHHHHHHHHHHHHHH
Confidence 6542 23 44444410 11247899998 7 6656666666666665543
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=238.13 Aligned_cols=298 Identities=13% Similarity=0.061 Sum_probs=206.2
Q ss_pred CccccCCCCchHHHHHHHHHHHhCC--CeEEEeCChHHHH--HHHHHHhcC--C----------CCeEEEeCCCchhHHH
Q 013210 90 FFIYSRHFNPTVLNLSRQMAALEGT--EAAYCTASGMSAI--SSVLMQLCS--S----------GGHVVAARTLYGGTHA 153 (447)
Q Consensus 90 ~~~~~r~~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~--~~al~~l~~--~----------gd~Vi~~~~~y~~~~~ 153 (447)
.+.|+. .....++++.||+++++ +.+++|+|+++++ ++++++++. + ||+|+++.|+|+++..
T Consensus 71 ~~~Y~~--~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~ 148 (427)
T 3ppl_A 71 VRNYGG--LDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS 148 (427)
T ss_dssp TTSSCC--SSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH
T ss_pred hcCCCC--CCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHH
Confidence 344543 23346899999999986 4599999999999 578888776 6 8999999999999988
Q ss_pred HHHhhcCcccCeeEEEeCCC----CHHHHHHhhccCCceEEEEE-cCCCCCccccCHH---HHHHHH-HhcCCEEEEeCC
Q 013210 154 LLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVDNT 224 (447)
Q Consensus 154 ~~~~~~~~~~g~~~~~v~~~----d~~~l~~~i~~~~t~lV~i~-~~~NptG~v~~l~---~I~~la-~~~gi~livD~~ 224 (447)
.+. ..|.++..++.+ |+++|+++++++++++|+++ +++||||.+++.+ +|+++| ++||+++|+|++
T Consensus 149 ~~~-----~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~ 223 (427)
T 3ppl_A 149 ITE-----RFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNA 223 (427)
T ss_dssp HHH-----HTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECT
T ss_pred HHH-----HcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECC
Confidence 773 257777777654 89999999944789999876 8999999999877 888888 999999999999
Q ss_pred CCCCCCCc--------c-------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHH
Q 013210 225 FSPLVLSP--------A-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 289 (447)
Q Consensus 225 ~~~~~~~~--------~-------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a 289 (447)
|+.+.+.. . ..+.++++.|+||+ +++|.|+ ||+++++++++.+....... ....+.+.+.++
T Consensus 224 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~q~~~ 300 (427)
T 3ppl_A 224 YAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGV-SFFLTSAENRKWYTGHAGIR-GIGPNKVNQLAH 300 (427)
T ss_dssp TTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSC-EEEECCHHHHHHHHHHHHHH-CSCCCHHHHHHH
T ss_pred CcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-cCcCccE-EEEEcCHHHHHHHHHHhhcc-cCCCCHHHHHHH
Confidence 96643321 1 33678999999999 6689998 99999999998887765521 123333444444
Q ss_pred HHHHccC----CcHHHHHHHHHHHHHHHHHHHHhC----C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH
Q 013210 290 FELSERI----PHLGLRMKEHCHRALIFARRMKKL----G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 360 (447)
Q Consensus 290 ~~~~~~~----~~l~~~~~~~~~~~~~l~~~L~~~----~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~ 360 (447)
...+... +++....+.+.++++.+.+.|.+. + ..+..|. .|.++++.++...
T Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-------------------~g~~~~~~~~~~~ 361 (427)
T 3ppl_A 301 ARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA-------------------GGYFISLDVVPGT 361 (427)
T ss_dssp HHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS-------------------BSSCEEEECSTTC
T ss_pred HHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC-------------------ccEEEEEECCcch
Confidence 4444431 223344455677777777777552 2 2443332 4678999998542
Q ss_pred HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHH
Q 013210 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALS 437 (447)
Q Consensus 361 ~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~ 437 (447)
...+.+.|... | +.+..|+.+.. .. .+..++.+|||++ .. ++++.++.|.++++
T Consensus 362 -~~~~~~~l~~~---g-v~v~~~g~~~~----~~-------------~~~~~~~~Ris~~-~~~~~~i~~~~~~l~~~l~ 418 (427)
T 3ppl_A 362 -ASRVAELAKEA---G-IALTGAGSSYP----LR-------------QDPENKNLRLAPS-LPPVEELEVAMDGVATCVL 418 (427)
T ss_dssp -HHHHHHHHHHT---T-EECCCTTTTSG----GG-------------CCTTSCEEEECCS-SSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHC---C-CEEecCcCcCC----CC-------------CCCCCCeEEEECC-CCCHHHHHHHHHHHHHHHH
Confidence 55667777653 4 46555432110 00 0123588999999 64 34444555555555
Q ss_pred Hh
Q 013210 438 RM 439 (447)
Q Consensus 438 ~~ 439 (447)
++
T Consensus 419 ~~ 420 (427)
T 3ppl_A 419 LA 420 (427)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=237.71 Aligned_cols=292 Identities=12% Similarity=0.120 Sum_probs=202.5
Q ss_pred CchHHHHHHHHHHHhCCCe--E-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchh--HHHHHHhhcCcccCeeEEEeCC
Q 013210 98 NPTVLNLSRQMAALEGTEA--A-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~--~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+..+++++.+++++|.+. + ++++||++|+.+++++++++||+|+++.+.|++ +...+ .. .|.++++++.
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~----~~-~g~~~~~v~~ 117 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIA----ER-YGANVHMLEC 117 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHH----HH-TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHH----Hh-cCCeeEEEec
Confidence 4567899999999999754 4 489999999999999999999999999999987 33333 22 6888888877
Q ss_pred C-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCC
Q 013210 173 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSIS 245 (447)
Q Consensus 173 ~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~s 245 (447)
+ |+++|++++.++++++|++++|+||||.+.|+++|.++|++||+++|+|++|+ ....+....++|+++.|+|
T Consensus 118 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~ 197 (416)
T 3isl_A 118 EWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQ 197 (416)
T ss_dssp CTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSS
T ss_pred CCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCc
Confidence 6 89999999943689999999999999999999999999999999999999983 3444555668999999999
Q ss_pred cc-ccCCCCeeEEEEEcChHHHHHHHHHh-----------------------------------hhhhhhcCCC-ccHHH
Q 013210 246 KF-ISGGADIIAGAVCGPANLVNSMMDLH-----------------------------------QGALMLLGPT-MNPKV 288 (447)
Q Consensus 246 K~-~g~~g~~igG~l~~~~~~~~~l~~~~-----------------------------------~~~~~~~g~~-~~~~~ 288 (447)
|+ +|+.| + |+++.++++++.+.... .......++. .....
T Consensus 198 K~l~g~~g--~-g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (416)
T 3isl_A 198 KCLSVPSG--M-APITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLY 274 (416)
T ss_dssp STTCCCSS--E-EEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHH
T ss_pred cccCCCCC--e-EEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHH
Confidence 97 55444 5 89999999887776321 0000011111 11111
Q ss_pred HH-HHHccCC-c-HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHH
Q 013210 289 AF-ELSERIP-H-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL 365 (447)
Q Consensus 289 a~-~~~~~~~-~-l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l 365 (447)
+. .++..+. . +....+++.++++++.+.|++.+.++..|.. ...+.+++|.++...+...+
T Consensus 275 a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l 338 (416)
T 3isl_A 275 ALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDS----------------CKMPVVTCVEIPGGIDGESV 338 (416)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG----------------GBCTTEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCcc----------------ccCCcEEEEeCCCCCCHHHH
Confidence 11 2222211 1 5567778899999999999987665544320 02356999999633335677
Q ss_pred HHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 366 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 366 ~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+.|... +| +.++.|.. ...++.+|||++...+.++.++.+.++|+++
T Consensus 339 ~~~L~~~--~g-i~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~ 386 (416)
T 3isl_A 339 RDMLLAQ--FG-IEIASSFG-----------------------PLAGKIWRIGTMGYSCRKENVLFVLAGLEAV 386 (416)
T ss_dssp HHHHHHH--HC-EECBCCCS-----------------------TTTTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CC-EEEecCCC-----------------------CCCCCEEEEecccCCCcHHHHHHHHHHHHHH
Confidence 7777542 23 45555520 1235789999941233333344444444443
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-28 Score=241.57 Aligned_cols=280 Identities=11% Similarity=0.086 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHh-----CC--Ce---EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcc-cCeeEEE
Q 013210 101 VLNLSRQMAALE-----GT--EA---AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRA-CNITTTF 169 (447)
Q Consensus 101 ~~~l~~~ia~l~-----g~--~~---~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-~g~~~~~ 169 (447)
..++++.+|+++ +. +. +++|+||++|+.+++++++++||+|+++.|.|+++...+ +. .|.++..
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~-----~~~~g~~~~~ 164 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVF-----NTRNGANLQT 164 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHH-----TTTTCCEEEE
T ss_pred CHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHH-----HHhcCCeEEE
Confidence 468999999998 54 57 999999999999999999999999999999999998776 23 5778777
Q ss_pred eCCC------CHHHHHHhhccC---CceEEEEEcCCCCCccccC---HHHHHHHHHh-----cCCEEEEeCCCCCCCCC-
Q 013210 170 VDIS------DHEMVNSAIVQG---RTKVLYFESISNPTLAVAN---IPELSRLAHD-----KGVTVVVDNTFSPLVLS- 231 (447)
Q Consensus 170 v~~~------d~~~l~~~i~~~---~t~lV~i~~~~NptG~v~~---l~~I~~la~~-----~gi~livD~~~~~~~~~- 231 (447)
++.+ |+++|++++ ++ ++++|++++|+||||.+.+ +++|+++|++ +|+++|+|++|+.+.+.
T Consensus 165 ~~~~~~~~~~d~~~l~~~l-~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~ 243 (430)
T 2x5f_A 165 YPIFDKDGHYTTDSLVEAL-QSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYED 243 (430)
T ss_dssp ECCBCTTSCBCSHHHHHHH-HHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSS
T ss_pred EeccCccCCcCHHHHHHHH-HhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCc
Confidence 7642 689999988 44 7899999999999999998 8899999999 99999999999655332
Q ss_pred ----c-c----C-CCC---eEEEeCCCccccCCCCeeEEEEEc---ChHHHHHHHHHhhhh---hhhcCCCccHHHHHHH
Q 013210 232 ----P-A----R-LGA---DVVVHSISKFISGGADIIAGAVCG---PANLVNSMMDLHQGA---LMLLGPTMNPKVAFEL 292 (447)
Q Consensus 232 ----~-~----~-~g~---di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~~~~~~---~~~~g~~~~~~~a~~~ 292 (447)
+ . . .+. ++++.|+||.+|++|.|+ ||+++ ++++++.+....... .....+.+.+.++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 322 (430)
T 2x5f_A 244 VYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRV-GFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHV 322 (430)
T ss_dssp SCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCC-EEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred ccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCe-EEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHH
Confidence 1 1 1 346 789999999999899998 89988 999988887654420 1122333333344444
Q ss_pred Hc-cCCcHHH---HHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013210 293 SE-RIPHLGL---RMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 364 (447)
Q Consensus 293 ~~-~~~~l~~---~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~ 364 (447)
+. ....... ..+++.++++++.+.|+ +.+..+..|. .|.++++.+++ .+...
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~-------------------~g~~~~~~~~~-~~~~~ 382 (430)
T 2x5f_A 323 LKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFN-------------------SGYFMAIKVHD-VDPEA 382 (430)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCC-------------------BSSEEEEEESS-SCHHH
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCC-------------------ceEEEEeCCCC-CCHHH
Confidence 43 2212233 56677888999999998 4444443221 34478999872 22456
Q ss_pred HHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHH
Q 013210 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSR 438 (447)
Q Consensus 365 l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~ 438 (447)
+.+.|.. +.| +.+..| .++.+|||++ . +++++.++.|.+++++
T Consensus 383 ~~~~l~~--~~g-i~v~~g---------------------------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 383 LRKHLID--KYS-IGVIAL---------------------------NATDIRIAFS-CVEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp HHHHHHH--HHC-EECEEC---------------------------SSSEEEEEGG-GSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCC-EEEecC---------------------------CCCeEEEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence 6666654 023 343332 1478999999 5 2344445555555443
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=238.77 Aligned_cols=316 Identities=15% Similarity=0.126 Sum_probs=212.8
Q ss_pred cccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc------CCC
Q 013210 68 FTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC------SSG 138 (447)
Q Consensus 68 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~------~~g 138 (447)
+..+.+ +.+.+.+...++++.....|.....+...++++.+++++|++ .+++|+||++++.+++++++ ++|
T Consensus 39 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~g 118 (416)
T 1qz9_A 39 ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPE 118 (416)
T ss_dssp CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCC
Confidence 444555 777777765566543221232223466789999999999975 69999999999999888876 889
Q ss_pred Ce-EEEeCCCchhHHHHHHhhcCccc--CeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc
Q 013210 139 GH-VVAARTLYGGTHALLTHFFPRAC--NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 215 (447)
Q Consensus 139 d~-Vi~~~~~y~~~~~~~~~~~~~~~--g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~ 215 (447)
|+ |+++.++|+++...+...... . |.++.+++. +++|++++ ++++++|++++++||||.+.|+++|.++|+++
T Consensus 119 d~vii~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~~--~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~ 194 (416)
T 1qz9_A 119 RRVIVTETSNFPTDLYIAEGLADM-LQQGYTLRLVDS--PEELPQAI-DQDTAVVMLTHVNYKTGYMHDMQALTALSHEC 194 (416)
T ss_dssp CCEEEEETTSCHHHHHHHHHHHHH-HCSSCEEEEESS--GGGHHHHC-STTEEEEEEESBCTTTCBBCCHHHHHHHHHHH
T ss_pred CcEEEEcCCCCCchHHHHHHHHHH-hcCCceEEEeCc--HHHHHHHh-CCCceEEEEeccccCcccccCHHHHHHHHHHc
Confidence 86 566667888776654322111 3 888998886 88899988 67899999999999999999999999999999
Q ss_pred CCEEEEeCCCC--CCCCCccCCCCeEEEeCCCcccc-CCCCeeEEEEEcChHHHHHHHHHhhhh----------------
Q 013210 216 GVTVVVDNTFS--PLVLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA---------------- 276 (447)
Q Consensus 216 gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~---------------- 276 (447)
|+++|+|++|+ ....+...+++|+++.|+||+++ ++|. + |+++.++++++.+.....++
T Consensus 195 ~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~-~-g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~ 272 (416)
T 1qz9_A 195 GALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS-Q-AFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPS 272 (416)
T ss_dssp TCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC-C-CEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBC
T ss_pred CCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCC-e-EEEEECHHHHhccCCCccccCccccccCCCCccCCC
Confidence 99999999994 22223334478999999999974 4443 3 88888887766554321110
Q ss_pred ----hhhcCCC-ccHHH-HHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhcc
Q 013210 277 ----LMLLGPT-MNPKV-AFELSERI--PHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANK 344 (447)
Q Consensus 277 ----~~~~g~~-~~~~~-a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~ 344 (447)
....++. ..... +..++..+ ..+....+++.++++++.+.|++. +..+..|.. +
T Consensus 273 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~---~----------- 338 (416)
T 1qz9_A 273 NGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPRE---H----------- 338 (416)
T ss_dssp SSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSS---G-----------
T ss_pred cchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCC---H-----------
Confidence 0112222 11222 22223222 356677788899999999999875 555544320 0
Q ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC-C
Q 013210 345 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL-G 423 (447)
Q Consensus 345 ~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~-~ 423 (447)
...+++++|.+++ ...+.+.|... | +.+.. ..++.+|||++ . .
T Consensus 339 -~~~~~~~~~~~~~---~~~l~~~l~~~---g-i~~~~---------------------------~~~~~lRis~~-~~~ 382 (416)
T 1qz9_A 339 -AKRGSHVSFEHPE---GYAVIQALIDR---G-VIGDY---------------------------REPRIMRFGFT-PLY 382 (416)
T ss_dssp -GGBCSEEEEECTT---HHHHHHHHHTT---T-EECEE---------------------------ETTTEEEEECC-TTT
T ss_pred -HHcCCEEEEecCC---HHHHHHHHHhC---C-cEecc---------------------------CCCCeEEEeCc-ccC
Confidence 0135689999875 35667777652 3 22210 02478999997 4 5
Q ss_pred CHHHHHHHHHHHHHHh
Q 013210 424 TLDQRWSQFEKALSRM 439 (447)
Q Consensus 424 ~~~~~i~~l~~al~~~ 439 (447)
.+++.++.+.++|+++
T Consensus 383 ~t~~~i~~~~~~l~~~ 398 (416)
T 1qz9_A 383 TTFTEVWDAVQILGEI 398 (416)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5666666666666554
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=234.39 Aligned_cols=293 Identities=12% Similarity=0.031 Sum_probs=201.1
Q ss_pred chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 99 PTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
....++++.+|+++|.+ .+++|+||++|+.+++++++++||+|+++.++|+++. .. ..... .|.++..++.+
T Consensus 42 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~~~~ 118 (392)
T 2z9v_A 42 LLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG-FG-YWAKR-YSPHLLEIEVPYNE 118 (392)
T ss_dssp HHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH-HH-HHHHH-HCSCEEEEECCTTS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH-HH-HHHHH-cCCceEEeeCCCCC
Confidence 45688999999999974 6999999999999999999999999999999998873 22 22222 57777777653
Q ss_pred --CHHHHHHhhcc-CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCccc
Q 013210 174 --DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFI 248 (447)
Q Consensus 174 --d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~ 248 (447)
|+++|++++++ +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+ ....+...+++|+++.|+||++
T Consensus 119 ~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~ 198 (392)
T 2z9v_A 119 AIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCL 198 (392)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTT
T ss_pred CCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccc
Confidence 89999999842 579999999999999999999999999999999999999994 2333444457899999999965
Q ss_pred c-CCCCeeEEEEEcChHHHHHHHHHhh-----------------hhhhhcCCCccH-HHH-HHHHccCC-c-HHHHHHHH
Q 013210 249 S-GGADIIAGAVCGPANLVNSMMDLHQ-----------------GALMLLGPTMNP-KVA-FELSERIP-H-LGLRMKEH 306 (447)
Q Consensus 249 g-~~g~~igG~l~~~~~~~~~l~~~~~-----------------~~~~~~g~~~~~-~~a-~~~~~~~~-~-l~~~~~~~ 306 (447)
+ ++| + |+++.++++++.++.... ......++.... ..+ ..++..+. . +....+++
T Consensus 199 ~~~~g--~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~ 275 (392)
T 2z9v_A 199 GAPPG--L-TMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARH 275 (392)
T ss_dssp CCCSC--C-EEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCCCc--e-eEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4 455 4 899999998887754210 000112222111 111 12222221 1 45566778
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcc
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
.++++++.+.|++.+.++..|. +. ...+.+++|.++.......+.+.|... +| +.+..|..
T Consensus 276 ~~~~~~l~~~L~~~g~~~~~~~----~~-----------~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-i~v~~g~~- 336 (392)
T 2z9v_A 276 ALTAKAMRAGVTAMGLSVWAAS----DS-----------IASPTTTAVRTPDGVDEKALRQAARAR--YG-VVFSSGRG- 336 (392)
T ss_dssp HHHHHHHHHHHHHTTCCBSSSS----GG-----------GBCTTEEEEECCTTCCHHHHHHHHHHH--HC-EECEECCG-
T ss_pred HHHHHHHHHHHHHcCCeeccCC----cc-----------ccCCceEEEECCCCCCHHHHHHHHHhc--CC-EEEecCCC-
Confidence 8999999999988755554321 00 013568899986322245677777652 23 45555521
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~ 439 (447)
+ ..++.+|||+ + ...+++.++.+.++|+++
T Consensus 337 -------~---------------~~~~~lRi~~~~-~~~~~~~i~~~~~~l~~~ 367 (392)
T 2z9v_A 337 -------E---------------TLGKLTRIGHMG-PTAQPIYAIAALTALGGA 367 (392)
T ss_dssp -------G---------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred -------C---------------CCCCeEEEeCcc-cccCHHHHHHHHHHHHHH
Confidence 0 1247899995 5 345555566655555544
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=235.49 Aligned_cols=290 Identities=13% Similarity=0.098 Sum_probs=201.4
Q ss_pred chHHHHHHHHHHHhCCC---eEE-EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 99 PTVLNLSRQMAALEGTE---AAY-CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~---~~~-~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
+..+++++.+++++|.+ .++ +|+||++|+++++++++++||+|+++.+.|.+.... ..... .|.++..++.+
T Consensus 52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~--~~~~~-~g~~~~~v~~~~ 128 (376)
T 3f0h_A 52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFV--QLCEI-HEIPYVALKLEH 128 (376)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHH--HHHHH-TTCCEEEEECCT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHH--HHHHH-cCCceEEEeCCC
Confidence 56688999999999875 444 589999999999999999999999999877764322 11222 57777776643
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC--CCCccCCCCeEEEeCCCcc
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKF 247 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~--~~~~~~~g~di~~~S~sK~ 247 (447)
|+++|++++ ++++++|++++|+||||.+.|+++|.++|++||+++|+|++|+.. ..+....++|+++.|+||+
T Consensus 129 ~~~~d~~~l~~~~-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~ 207 (376)
T 3f0h_A 129 GKKLTKEKLYEYD-NQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKV 207 (376)
T ss_dssp TCCCCHHHHHTTT-TSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTT
T ss_pred CCCCCHHHHHHhh-ccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCccc
Confidence 899999988 788999999999999999999999999999999999999998433 3334445789999999999
Q ss_pred cc-CCCCeeEEEEEcChHHHHHHHHHhhhhh-------------hhcCCCccH---HHHHHHHccC--C-cHHHHHHHHH
Q 013210 248 IS-GGADIIAGAVCGPANLVNSMMDLHQGAL-------------MLLGPTMNP---KVAFELSERI--P-HLGLRMKEHC 307 (447)
Q Consensus 248 ~g-~~g~~igG~l~~~~~~~~~l~~~~~~~~-------------~~~g~~~~~---~~a~~~~~~~--~-~l~~~~~~~~ 307 (447)
++ ++| + |+++.++++++.+........ .....+++. .++..++..+ . .+....++..
T Consensus 208 l~~~~G--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 284 (376)
T 3f0h_A 208 LACPPG--I-SVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIA 284 (376)
T ss_dssp TCCCSS--C-EEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ccCCCc--e-EEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99 555 4 888999998887764211000 001122222 1122222211 1 3556667778
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccc
Q 013210 308 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 308 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++++++.+.|++.+.++..+. ..+.++.+...+. ....+.+.|... +| +.++.|..
T Consensus 285 ~~~~~l~~~L~~~~~~~~~~~------------------~~~~~~~~~~~~~-~~~~l~~~l~~~--~g-i~v~~g~~-- 340 (376)
T 3f0h_A 285 SQAADFRAKIKDLPFELVSES------------------PANGVTSVHPTTA-NAYDIFLKLKDE--YG-IWICPNGG-- 340 (376)
T ss_dssp HHHHHHHHHTTTSSEEECCSS------------------BBTTEEEEEESSS-CHHHHHHHHHHH--SS-EECEECCG--
T ss_pred HHHHHHHHHHHHcCCccCccc------------------cCceEEEEeCCCC-CHHHHHHHHHHh--CC-EEEecCcc--
Confidence 888999999988765443221 1233555554432 245677777652 23 45554410
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
...++.+|||++ ...+++.++.+.++|+++.+
T Consensus 341 ---------------------~~~~~~lRis~~-~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 341 ---------------------EMKDTIFRVGHI-GALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp ---------------------GGTTTCEEEECC-SSCCHHHHHHHHHHHHHHHH
T ss_pred ---------------------ccCCCEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 012478999999 77788888888888876643
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=237.75 Aligned_cols=263 Identities=21% Similarity=0.265 Sum_probs=204.4
Q ss_pred CCCCccccCCCCchHHHHHHHHHHHhCCCeEEE---eCChHHHHHHHHHHhcCCCCeEEEeC-CCchhHHHHHH------
Q 013210 87 DRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT------ 156 (447)
Q Consensus 87 ~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~---tsggt~A~~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~------ 156 (447)
+.++|.|++ +..+++++.+++++|.+...+ ++||++|+..++.+++++||+|+++. +.|+++...+.
T Consensus 56 ~~~g~~y~~---~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~ 132 (431)
T 3ht4_A 56 PTTGYGYDD---IGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGV 132 (431)
T ss_dssp CCCTTCCSC---HHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSS
T ss_pred CCCCCCCCh---hhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhccccc
Confidence 345566654 457899999999999987665 67999999999999999999999998 99998876652
Q ss_pred hhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEc-CCCCCcc---ccCHHHHHHHHHh--cCCEEEEeCCC
Q 013210 157 HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFES-ISNPTLA---VANIPELSRLAHD--KGVTVVVDNTF 225 (447)
Q Consensus 157 ~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~-~~NptG~---v~~l~~I~~la~~--~gi~livD~~~ 225 (447)
..+.. .|+++++++.+ |+++|++++ +++|++|++++ |+||+|. +.++++|+++|++ +|+++|+|++|
T Consensus 133 ~~~~~-~G~~~~~v~~~~~~~~d~e~l~~~l-~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~ 210 (431)
T 3ht4_A 133 GSFKE-YNIGYNAVPLTEGGLVDFEAVAAAI-HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCY 210 (431)
T ss_dssp SCSGG-GTCEEEECCBCTTSSBCHHHHHHHC-CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTT
T ss_pred chHHH-cCCEEEEeCCCCCCCcCHHHHHhhc-CCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 22333 68999999874 999999999 78999999995 5555554 4578999999999 99999999999
Q ss_pred CCCC--CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh--hhhcCCCccHHHHHHHHccCCcHHH
Q 013210 226 SPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA--LMLLGPTMNPKVAFELSERIPHLGL 301 (447)
Q Consensus 226 ~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~--~~~~g~~~~~~~a~~~~~~~~~l~~ 301 (447)
+.+. ..+..+++|++++|+||++|+++...||++++++++++.+....... ....+.+.. .++.++..++.+..
T Consensus 211 ~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~--~~~~~~~~l~~~~~ 288 (431)
T 3ht4_A 211 GEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLY--SLQEMYQGFFLAPH 288 (431)
T ss_dssp CTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCS--CSHHHHHHHHHHHH
T ss_pred hhhccCCCccccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHH--HHHHHHhHhhhHHH
Confidence 5554 46777899999999999998755445799999999999887644311 111222222 12233445566777
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 302 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
++++..+++.++++.|++++.++ +|. ++.+ +.+.++.|.+++.+.+.+|++.|+.
T Consensus 289 ~~~~~~~~a~~l~~~L~~~g~~v-~p~-~~~~-------------~~~li~~i~l~~~~~~~~~~~~l~~ 343 (431)
T 3ht4_A 289 VAGQALKGAIFTAAFLEKLGMNT-SPA-WNAP-------------RTDLIQSVQFDDKDRMIAFCQAIQY 343 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCE-ESC-TTSC-------------CSSSCCEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCEe-cCC-CCCC-------------CccEEEEEEeCCHHHHHHHHHHHHh
Confidence 88899999999999999998877 565 4433 3455899999988888999999986
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=242.60 Aligned_cols=334 Identities=15% Similarity=0.105 Sum_probs=209.3
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc--------CCCCeEEE
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC--------SSGGHVVA 143 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~--------~~gd~Vi~ 143 (447)
+++.+.+...+++|.+.|.+++...+..+++++.+|+++|.+ .++||+||++|+.+++++++ ++||+|++
T Consensus 36 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~ 115 (432)
T 3a9z_A 36 QAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQ 115 (432)
T ss_dssp HHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccc
Confidence 666666655667777666666555667789999999999974 69999999999999998875 47875555
Q ss_pred eCCCc-------------hhHHHHHHhhcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccC
Q 013210 144 ARTLY-------------GGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN 204 (447)
Q Consensus 144 ~~~~y-------------~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~ 204 (447)
..|.| +++...+..+... .|.++.+++.+ |+++|++++ ++++++|++++|+||||.+.|
T Consensus 116 ~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~ 193 (432)
T 3a9z_A 116 ISPEEGTRPHFITCTVEHDSIRLPLEHLVED-QVAEVTFVPVSKVNGQVEVEDILAAV-RPTTCLVTIMLANNETGVIMP 193 (432)
T ss_dssp ------CCCEEEEETTCCHHHHHHHHHHHHT-TSCEEEEECCCTTTSSCCHHHHHHTC-CTTEEEEECCSBCTTTCBBCC
T ss_pred cccccccCCeEEEecCcchhHHHHHHHHHHh-cCcEEEEEecCcccCCcCHHHHHHhc-cCCceEEEEECcccCcccccC
Confidence 55555 4444444333223 58888888763 789999999 778999999999999999999
Q ss_pred HHHHHHHHHhcC----------CEEEEeCCCCCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHH-HHHHHH
Q 013210 205 IPELSRLAHDKG----------VTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMD 271 (447)
Q Consensus 205 l~~I~~la~~~g----------i~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~ 271 (447)
+++|.++|+++| +++|+|++|+.. ..+....+.|+++.|+||++| + ++ |+++.+++. ...+..
T Consensus 194 ~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~--~~-G~~~~~~~~~~~~~~~ 269 (432)
T 3a9z_A 194 ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-P--RI-GALYVRGVGKLTPLYP 269 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-C--SC-EEEEETTBTTTBCCCC
T ss_pred HHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcC-C--cc-eEEEEccccccCCcCc
Confidence 999999999999 999999999432 223333478999999999986 3 35 999887654 222221
Q ss_pred Hhhh----hhhhcCCCc-cHH-HHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhc
Q 013210 272 LHQG----ALMLLGPTM-NPK-VAFELSERI-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMAN 343 (447)
Q Consensus 272 ~~~~----~~~~~g~~~-~~~-~a~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~ 343 (447)
...+ .....++.. ... ++..++..+ +.+....+++.++++++.+.|+++ +..+..++....
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~----------- 338 (432)
T 3a9z_A 270 MLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPG----------- 338 (432)
T ss_dssp SCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTT-----------
T ss_pred eeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCc-----------
Confidence 1000 000112211 112 221222221 234556677888899999999875 444432221000
Q ss_pred cCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCC----CCeEEEE
Q 013210 344 KEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMS 418 (447)
Q Consensus 344 ~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~----~~~iRiS 418 (447)
....+++++|.+.+. .....+.+.+.. +.++.|..+... +.......+...|+. .+.||||
T Consensus 339 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~------i~~~~G~~~~~~-------~~~~~~~~l~~~g~~~~~~~~~iRis 404 (432)
T 3a9z_A 339 -VERLPNTCNFSIQGSQLRGYMVLAQCQT------LLASVGASCHSD-------HEDRPSPVLLSCGIPVDVARNAVRLS 404 (432)
T ss_dssp -CCBCTTEEEEEECSTTCCHHHHHHHCSS------EECBSSCGGGGG-------GTTSCCHHHHHTTCCHHHHTTEEEEE
T ss_pred -ccCCCCEEEEEeCCCCCcHHHHHHHhcC------eEEeccccccCC-------CCCCccHHHHhcCCCccccCceEEEE
Confidence 002455889998742 123456555542 456666433210 001122344445654 4799999
Q ss_pred eCCCCCHHHHHHHHHHHHHHh
Q 013210 419 VGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 419 ~g~~~~~~~~i~~l~~al~~~ 439 (447)
++ ..++++.++.+.++|+++
T Consensus 405 ~~-~~~t~eei~~~~~~l~~~ 424 (432)
T 3a9z_A 405 VG-RSTTRAEVDLIVQDLKQA 424 (432)
T ss_dssp CC-TTCCHHHHHHHHHHHHHH
T ss_pred cC-CCCCHHHHHHHHHHHHHH
Confidence 99 776677777776666654
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=239.15 Aligned_cols=286 Identities=12% Similarity=0.131 Sum_probs=200.6
Q ss_pred CCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCC----------CCeEEEeCCCchhHHHHHHhhcCc----
Q 013210 96 HFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSS----------GGHVVAARTLYGGTHALLTHFFPR---- 161 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~----------gd~Vi~~~~~y~~~~~~~~~~~~~---- 161 (447)
+..+..+++++.+++++|.+.++||+||++|+.++++.+..+ +++|++..+.|++...........
T Consensus 75 ~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 154 (392)
T 3ruy_A 75 FHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYK 154 (392)
T ss_dssp SEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTT
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhc
Confidence 456788999999999999999999999999999999876543 679999999998765544221110
Q ss_pred ----ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013210 162 ----ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-- 231 (447)
Q Consensus 162 ----~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-- 231 (447)
.....+..++.+|+++|++++ ++++++|++++++||||.+.| +++|.++|++||+++|+|++|+++...
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~ 233 (392)
T 3ruy_A 155 RGFGPMLPGIIVIPYGDLEALKAAI-TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK 233 (392)
T ss_dssp TTCCSCCSSEEEECTTCHHHHHHHC-CTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS
T ss_pred cccCCCCCCCeeeCcccHHHHHHHh-ccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc
Confidence 001235667777999999999 688999999999999999998 999999999999999999999655321
Q ss_pred -----ccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHH
Q 013210 232 -----PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 232 -----~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
......|+++ +||.+++ | .++ |+++.++++++.+....... ...++.+.+.++..++..+.. ....++
T Consensus 234 ~~~~~~~~~~~d~~~--~SK~l~g-G~~~~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~-~~~~~~ 307 (392)
T 3ruy_A 234 VFACDWDNVTPDMYI--LGKALGG-GVFPI-SCAAANRDILGVFEPGSHGS-TFGGNPLACAVSIAALEVLEE-EKLTER 307 (392)
T ss_dssp SSGGGGGTCCCSEEE--ECGGGGT-TTSCC-EEEEECHHHHTTCCTTSSCC-SSTTCHHHHHHHHHHHHHHHH-TTHHHH
T ss_pred chhhhccCCCCCEEE--EchhhhC-Chhhh-EEEEECHHHHhhhccCCcCC-CCCCCHHHHHHHHHHHHHHHh-hhHHHH
Confidence 1122457664 6799885 6 787 99999998877665443311 122222223333333322211 345667
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCc
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 385 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~ 385 (447)
+.++++++.+.|++.+.. .....+ +.|+++++.++. ....+.+.|... | +.++.|
T Consensus 308 ~~~~~~~l~~~L~~~~~~----~~~~~~-------------~~g~~~~~~~~~--~~~~l~~~l~~~---g-i~v~~~-- 362 (392)
T 3ruy_A 308 SLQLGEKLVGQLKEIDNP----MITEVR-------------GKGLFIGIELNE--PARPYCEQLKAA---G-LLCKET-- 362 (392)
T ss_dssp HHHHHHHHHHHHTTCCCT----TEEEEE-------------EETTEEEEEESS--CSHHHHHHHHTT---T-EECCCB--
T ss_pred HHHHHHHHHHHHHHhcCC----CceEEE-------------eeeeEEEEEEcc--hHHHHHHHHHHC---C-cEEecC--
Confidence 788899999999876421 100000 246789999875 356677777753 3 343332
Q ss_pred cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 386 ~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+|||++ ...+++.++.+.++|+++
T Consensus 363 -------------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 390 (392)
T 3ruy_A 363 -------------------------HENVIRIAPP-LVISEEDLEWAFQKIKAV 390 (392)
T ss_dssp -------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -------------------------CCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1478999998 777788888887777654
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=231.44 Aligned_cols=307 Identities=17% Similarity=0.205 Sum_probs=218.1
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+...++|+.+|+++|.+.+++|+|||+|+.++++++ +++||+|+++.++|+++...+. ..|.++++++.+
T Consensus 33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~~~~~~~ 107 (367)
T 3nyt_A 33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVA-----LLGAKPVYVDIDPR 107 (367)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTT
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCc
Confidence 45778999999999999999999999999999999998 8899999999999999988773 268888888765
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCC--eEEEeCC--
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA--DVVVHSI-- 244 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~--di~~~S~-- 244 (447)
|+++|++++ ++++++|+ |+||+|.+.|+++|.++|+++|+++|+|++|+ +..++....+. |+++.||
T Consensus 108 ~~~~d~~~l~~~i-~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~ 183 (367)
T 3nyt_A 108 TYNLDPQLLEAAI-TPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFP 183 (367)
T ss_dssp TCSBCGGGTGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCT
T ss_pred cCCcCHHHHHHhc-CcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCC
Confidence 889999999 78899888 78899999999999999999999999999994 34444433343 9999997
Q ss_pred CccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh--------hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 013210 245 SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM--------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 245 sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~--------~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~ 315 (447)
+|+++++|. ||+++. ++++.+.++..+..... .....+.+..++..+..++.+....++..++++++.+
T Consensus 184 ~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~ 261 (367)
T 3nyt_A 184 SAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDL 261 (367)
T ss_dssp TSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899998675 588876 57788887765542110 0123345555555555556667777788888899999
Q ss_pred HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccc
Q 013210 316 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 395 (447)
Q Consensus 316 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~ 395 (447)
.|++.+..+.... .... ....++.+.+++ ...+.+.|...+ +.++.+....+-..|...
T Consensus 262 ~L~~~~~~~~~~~--~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~G----I~~~~~~~~~~~~~~~~~ 320 (367)
T 3nyt_A 262 SLKQVGIGTPFIE--VNNI------------SVYAQYTVRMDN---RESVQASLKAAG----VPTAVHYPIPLNKQPAVA 320 (367)
T ss_dssp HHHHTTCCCCCCC--TTEE------------CCCSSEEEECSS---HHHHHHHHHHHT----CCCBCSCSSCGGGSGGGC
T ss_pred HhccCCeeccCCC--CCCc------------eeeEEEEEEeCC---HHHHHHHHHHCC----CceeccCCCccccChhhh
Confidence 9998764332111 1000 112255666653 456667776533 566655432222222221
Q ss_pred -cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 396 -TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 396 -~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
....++..+.. ....||++++ ...++++++.+.+++++..
T Consensus 321 ~~~~~~~~~~~~----~~~~l~lp~~-~~~t~~~i~~v~~~~~~~~ 361 (367)
T 3nyt_A 321 DEKAKLPVGDKA----ATQVMSLPMH-PYLDTASIKIICAALTNLE 361 (367)
T ss_dssp CTTCCCHHHHHH----HHHEEEECCC-TTCCHHHHHHHHHHHHC--
T ss_pred ccCCCChHHHHH----HhCeEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence 11122221111 2467999999 9999999999999987654
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=232.64 Aligned_cols=289 Identities=16% Similarity=0.134 Sum_probs=200.4
Q ss_pred chHHHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHhcCCCCeEEEeC-CCchhHH-HHHHhhcCcccCeeEEEeCC
Q 013210 99 PTVLNLSRQMAALEGTE----AAYCTASGMSAISSVLMQLCSSGGHVVAAR-TLYGGTH-ALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l~~~gd~Vi~~~-~~y~~~~-~~~~~~~~~~~g~~~~~v~~ 172 (447)
+...++++.+|+++|.. .+++|+||++|+.+++++++++||+|++.. +.|+... ..+. . .|.++..++.
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~----~-~g~~~~~v~~ 111 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAG----L-MGIAHHAYDC 111 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHH----H-HTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHH----H-hCCceEEEeC
Confidence 56789999999999942 599999999999999999988999987765 5555432 2221 2 5777777765
Q ss_pred -----CCHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC--CCCCccCCCCeEEEeCC
Q 013210 173 -----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSI 244 (447)
Q Consensus 173 -----~d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~--~~~~~~~~g~di~~~S~ 244 (447)
.|+++|++++++. ++++|++.+++||||.+.|+++|.++|++||+++|+|++|+. ...+....++|+++.|+
T Consensus 112 ~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~ 191 (366)
T 1m32_A 112 GEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSA 191 (366)
T ss_dssp CTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEES
T ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecC
Confidence 3899999998432 589999999999999999999999999999999999999942 23333345789999999
Q ss_pred Cccc-cCCCCeeEEEEEcChHHHHHHHHHhhhh----------h----hhcCCCccHH---HHHHHHccCCc---HHHHH
Q 013210 245 SKFI-SGGADIIAGAVCGPANLVNSMMDLHQGA----------L----MLLGPTMNPK---VAFELSERIPH---LGLRM 303 (447)
Q Consensus 245 sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~~----------~----~~~g~~~~~~---~a~~~~~~~~~---l~~~~ 303 (447)
||++ ++.| + |+++.++++++.+....... . .....+.+.. ++..++..+.. +....
T Consensus 192 ~K~~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~ 268 (366)
T 1m32_A 192 NKCIQGVPG--F-AFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARH 268 (366)
T ss_dssp SSTTCCCSS--E-EEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cccccCCCc--e-EEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHH
Confidence 9977 4444 5 99999888776553210000 0 0000122222 22222222211 45566
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhccccccccccc
Q 013210 304 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs 381 (447)
+++.++++++.+.|++.+.++..|.. + ..|.+++|.++. ......+.+.|... | +.+.
T Consensus 269 ~~~~~~~~~l~~~L~~~~~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~ 328 (366)
T 1m32_A 269 QRYQQNQRSLVAGMRALGFNTLLDDE---L-------------HSPIITAFYSPEDPQYRFSEFYRRLKEQ---G-FVIY 328 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBSSCGG---G-------------BCSSEEEEECCCCTTCCHHHHHHHHHHT---T-EECE
T ss_pred HHHHHHHHHHHHHHHHCCCeeccCch---h-------------cCceEEEEEcCccCCCCHHHHHHHHHHC---C-EEEE
Confidence 77889999999999887554433210 0 134589999873 22356677777652 3 4554
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.|.. + ..+.+|||++ ..++++.++.+.++|+++.
T Consensus 329 ~~~~--------~----------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~ 362 (366)
T 1m32_A 329 PGKV--------S----------------QSDCFRIGNI-GEVYAADITALLTAIRTAM 362 (366)
T ss_dssp ECCC--------S----------------SSCEEEEECC-SSCCHHHHHHHHHHHHHHC
T ss_pred CCcC--------C----------------CCCEEEEecC-CCCCHHHHHHHHHHHHHHH
Confidence 4421 1 2478999999 8888888888888887663
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=233.25 Aligned_cols=291 Identities=14% Similarity=0.122 Sum_probs=197.9
Q ss_pred chHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC---
Q 013210 99 PTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--- 172 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~--- 172 (447)
....++++.+|+++|.+ .+++|+||++|+.+++++++++||+|+++.++|+++.. . ..... .|.+++.++.
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~-~-~~~~~-~g~~~~~v~~~~~ 127 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERA-V-EMSER-YGADVRTIEGPPD 127 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHH-H-HHHHH-TTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHH-H-HHHHH-cCCceEEecCCCC
Confidence 45789999999999974 58999999999999999999999999999999998741 1 11122 6888888874
Q ss_pred --CCHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCcc
Q 013210 173 --SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKF 247 (447)
Q Consensus 173 --~d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~ 247 (447)
.|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+ ....+...+++|+++.|+||+
T Consensus 128 ~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~ 206 (396)
T 2ch1_A 128 RPFSLETLARAI-ELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKV 206 (396)
T ss_dssp SCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-C
T ss_pred CCCCHHHHHHHH-HhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCcc
Confidence 3899999999 55 79999999999999999999999999999999999999994 222334455789999999997
Q ss_pred ccCCCCeeEEEEEcChHHHHHHHHHh--------------hhh------hhhcCCCc--cHHHHHHHHccC--CcHHHHH
Q 013210 248 ISGGADIIAGAVCGPANLVNSMMDLH--------------QGA------LMLLGPTM--NPKVAFELSERI--PHLGLRM 303 (447)
Q Consensus 248 ~g~~g~~igG~l~~~~~~~~~l~~~~--------------~~~------~~~~g~~~--~~~~a~~~~~~~--~~l~~~~ 303 (447)
++++. .+ |+++.++++++.+.... ... ....++.. .+.++..++..+ +.+....
T Consensus 207 ~~~~~-g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 284 (396)
T 2ch1_A 207 LGAPP-GI-TPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQI 284 (396)
T ss_dssp CCCCS-SC-EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccCCC-Ce-EEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHH
Confidence 76442 24 88988888877764310 000 00112121 122222233322 2355677
Q ss_pred HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013210 304 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
+++.++++++.+.|++++.++..|.- .+..+.+++|.++...+...+.+.|... +| +.+..|
T Consensus 285 ~~~~~~~~~l~~~L~~~g~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~g-i~v~~g 346 (396)
T 2ch1_A 285 KRRIECAQILYEGLGKMGLDIFVKDP---------------RHRLPTVTGIMIPKGVDWWKVSQYAMNN--FS-LEVQGG 346 (396)
T ss_dssp HHHHHHHHHHHHHHHHHTCCBSSCSG---------------GGBCTTEEEEECCTTCCHHHHHHHHHHH--HC-BCCBCC
T ss_pred HHHHHHHHHHHHHHHHCCCeeccCCc---------------cccCCceEEEEcCCCCCHHHHHHHHHHh--CC-EEEecC
Confidence 78889999999999887655543320 0123458899986322355677776541 23 455444
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHH
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALS 437 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~ 437 (447)
.. + ..++.+|||+ + ...+++.++.+.++|+
T Consensus 347 ~~--------~---------------~~~~~iRi~~~~-~~~~~e~i~~~~~~l~ 377 (396)
T 2ch1_A 347 LG--------P---------------TFGKAWRVGIMG-ECSTVQKIQFYLYGFK 377 (396)
T ss_dssp CG--------G---------------GTTTEEEEECCG-GGCSHHHHHHHHHHHH
T ss_pred cc--------c---------------cCCCEEEEECCC-CcCCHHHHHHHHHHHH
Confidence 21 1 1257899999 6 4334444444444443
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=234.03 Aligned_cols=257 Identities=17% Similarity=0.146 Sum_probs=178.3
Q ss_pred chHHHHHHHHHHHh------C--CCeEEEeCChHHHHHHHHHHhcCCCC-----eEEEe-CCCchhHHHHHHhhcC-ccc
Q 013210 99 PTVLNLSRQMAALE------G--TEAAYCTASGMSAISSVLMQLCSSGG-----HVVAA-RTLYGGTHALLTHFFP-RAC 163 (447)
Q Consensus 99 ~~~~~l~~~ia~l~------g--~~~~~~tsggt~A~~~al~~l~~~gd-----~Vi~~-~~~y~~~~~~~~~~~~-~~~ 163 (447)
....++++.+|+++ + .+.+++|+||++|+++++++++++|| +|+++ .|+|+++...+..... ...
T Consensus 75 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~ 154 (417)
T 3g7q_A 75 QGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSA 154 (417)
T ss_dssp TSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEEC
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccc
Confidence 34578999999886 3 35699999999999999999999987 89997 9999988765421100 112
Q ss_pred CeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCC----CC
Q 013210 164 NITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL----VL 230 (447)
Q Consensus 164 g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~----~~ 230 (447)
+..+..++.+ |+++|+ + ++++++|++++|+||||.+++ +++|+++|++||+++|+|++|+.+ .+
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~--~-~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~ 231 (417)
T 3g7q_A 155 RPNIELLPEGQFKYHVDFEHLH--I-GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIF 231 (417)
T ss_dssp CCEEEEEGGGEEEEECCGGGCC--C-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBC
T ss_pred cCcccccCCcccccccCHHHhc--c-ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccc
Confidence 4445545432 777776 5 678999999999999999998 889999999999999999999532 11
Q ss_pred ---CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHH---H-HH
Q 013210 231 ---SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG---L-RM 303 (447)
Q Consensus 231 ---~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~---~-~~ 303 (447)
.+...+.++++.|+|| ++++|.|+ ||++.++++++.+....... ...++.+.+.++...+....... . ..
T Consensus 232 ~~~~~~~~~~~i~~~s~sK-~~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 308 (417)
T 3g7q_A 232 SEARPLWNPNIILCMSLSK-LGLPGSRC-GIIIANDKTITAIANMNGII-SLAPGGMGPAMMCEMIKRNDLLRLSETVIK 308 (417)
T ss_dssp SCCCCCCCTTEEEEEESGG-GTCTTSCC-EEEECCHHHHHHHHHHHHHH-CCCCCSHHHHHHHHHHHTTCHHHHHHHTHH
T ss_pred cccccCCCCCEEEEEechh-ccCCCcce-EEEEeCHHHHHHHHHhhcce-eeCCCcHHHHHHHHHHcCcchHHHHHHHHH
Confidence 1222468999999999 58899998 99999999999888765522 12334444554444444433221 2 33
Q ss_pred HHHHHHHHHHHHHHHh-C---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccc
Q 013210 304 KEHCHRALIFARRMKK-L---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFM 378 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~-~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~ 378 (447)
+++.++++.+.+.|++ . +..+..|. .|.++++.++. ..+...+...|... | +
T Consensus 309 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~~~l~~~l~~~---g-i 365 (417)
T 3g7q_A 309 PFYYQRVQQTIAIIRRYLSEERCLIHKPE-------------------GAIFLWLWFKDLPITTELLYQRLKAR---G-V 365 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTTCEEECCC-------------------BSSEEEEECTTCSSCHHHHHHHHHHT---T-E
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeeCCC-------------------cceEEEEEcCCCCCCHHHHHHHHHHC---C-E
Confidence 4567788888888876 3 23444332 46689999874 22356677777653 4 5
Q ss_pred cccccC
Q 013210 379 AVSLGY 384 (447)
Q Consensus 379 ~vs~G~ 384 (447)
.+..|.
T Consensus 366 ~v~~g~ 371 (417)
T 3g7q_A 366 LMVPGH 371 (417)
T ss_dssp ECEEGG
T ss_pred EEECch
Confidence 666663
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=241.39 Aligned_cols=308 Identities=14% Similarity=0.132 Sum_probs=204.3
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHh----C--CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCC
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----G--TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTL 147 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~----g--~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~ 147 (447)
+.+.+.+... +++...+.|+.. ....++++.+|+++ + .+.+++|+|+++++..+ ..++++||+|+++.|.
T Consensus 89 ~a~~~~~~~~-~~~~~~~~y~~~--~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~ 164 (449)
T 3qgu_A 89 DAMAKAAAGL-ATREGYSGYGAE--QGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPS 164 (449)
T ss_dssp HHHHHHHHGG-GGSCCCCCSTTT--TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESC
T ss_pred HHHHHHHHhh-ccccCCCCCCCC--CCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCC
Confidence 5555555432 222233445432 33478999999998 3 35699999999999998 7888999999999999
Q ss_pred chhHHHHHHhhcCcccCee----------EEEeCCCCHHHHHHhhcc-CCceEEEEEcCCCCCccccC---HHHHHHHHH
Q 013210 148 YGGTHALLTHFFPRACNIT----------TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAH 213 (447)
Q Consensus 148 y~~~~~~~~~~~~~~~g~~----------~~~v~~~d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~---l~~I~~la~ 213 (447)
|+++...+.. .|.+ +..++.++.+.+...+.. +++++|++++|+||||.+.+ +++|+++|+
T Consensus 165 ~~~~~~~~~~-----~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~ 239 (449)
T 3qgu_A 165 YPVYVDTSVM-----MGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFAR 239 (449)
T ss_dssp CTHHHHHHHH-----HTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred ChhHHHHHHH-----cCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHH
Confidence 9999887742 3544 666666532222222212 57899999999999999986 778888999
Q ss_pred hcCCEEEEeCCCCCCCCC------ccC----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHH--------HHHHHhhh
Q 013210 214 DKGVTVVVDNTFSPLVLS------PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVN--------SMMDLHQG 275 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~~------~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~--------~l~~~~~~ 275 (447)
+||+++|+|++|+.+.+. ... .++++++.|+||.+|++|.|+ ||+++++++++ .+.....
T Consensus 240 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~- 317 (449)
T 3qgu_A 240 KNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRL-GWTVVPKALKYANGEPVHADWNRVMT- 317 (449)
T ss_dssp HHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCC-EEEECCTTCBCTTSCBHHHHHHHHHH-
T ss_pred HCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcccee-EEEecCHHHHhhhhhhHHHHHHHHhh-
Confidence 999999999999655332 111 256899999999999999998 99999887664 3333332
Q ss_pred hhhhcCCCccHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
.....++.+.+.++..++.. .+++.+..+++.++++++.+.|++.++.+..|. .|.+++
T Consensus 318 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~ 378 (449)
T 3qgu_A 318 TCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGD-------------------DAPYIW 378 (449)
T ss_dssp HSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEESS-------------------SSSEEE
T ss_pred cccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC-------------------CeeEEE
Confidence 11112233333333333332 233556677889999999999998877665432 356889
Q ss_pred EEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 354 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
+.+++ .....+.+.|... .| +.+..|..+.. ..++.||||+. . +++.++.+.
T Consensus 379 ~~~~~-~~~~~~~~~l~~~--~g-I~v~pg~~f~~---------------------~~~~~iRis~~-~--~~e~i~~~l 430 (449)
T 3qgu_A 379 VGFPG-KPSWDVFAEILER--CN-IVTTPGSGYGP---------------------AGEGFVRASAF-G--SRENILEAV 430 (449)
T ss_dssp EECTT-SCHHHHHHHHHHH--HC-EECEEGGGGCG---------------------GGTTEEEEECC-S--CHHHHHHHH
T ss_pred EECCC-CCHHHHHHHHHHH--CC-EEEecchHhCC---------------------CCCCeEEEEec-C--CHHHHHHHH
Confidence 99872 2245566555431 23 45555532110 12578999987 4 445555555
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
++|+++
T Consensus 431 ~~l~~~ 436 (449)
T 3qgu_A 431 RRFKEA 436 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=233.46 Aligned_cols=277 Identities=16% Similarity=0.151 Sum_probs=189.5
Q ss_pred HHHHHHHHHHh----CCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 102 LNLSRQMAALE----GTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 102 ~~l~~~ia~l~----g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.++++.+++++ +.+ .+++|+||++|+..++++++++||+|+++.|.|+++...+. ..|.++..++.+
T Consensus 83 ~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~~~~ 157 (418)
T 3rq1_A 83 PDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICS-----DTGRTLVTYSLFD 157 (418)
T ss_dssp HHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECSBC
T ss_pred HHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHH-----HcCCEEEEEeeeC
Confidence 56777777765 566 89999999999999999999999999999999999987763 268888888752
Q ss_pred -----CHHHHHHhhcc---CCce-EEEEEcC-CCCCccccCHH---HHHHHHH------hcCCEEEEeCCCCCCCCCc--
Q 013210 174 -----DHEMVNSAIVQ---GRTK-VLYFESI-SNPTLAVANIP---ELSRLAH------DKGVTVVVDNTFSPLVLSP-- 232 (447)
Q Consensus 174 -----d~~~l~~~i~~---~~t~-lV~i~~~-~NptG~v~~l~---~I~~la~------~~gi~livD~~~~~~~~~~-- 232 (447)
|+++|++++.+ ++++ +|++++| +||||.+.+.+ +|+++|+ +||+++|+|++|..+.+..
T Consensus 158 ~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~ 237 (418)
T 3rq1_A 158 EHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDE 237 (418)
T ss_dssp TTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHH
T ss_pred CCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHH
Confidence 78999998832 1565 8889999 99999999865 4555565 8999999999996554431
Q ss_pred ----c----CCCC---eEEEeCCCccccCCCCeeEEEEEc---ChHHHHHHHHHhhhhhhhc---CCCccHHHHHHHHcc
Q 013210 233 ----A----RLGA---DVVVHSISKFISGGADIIAGAVCG---PANLVNSMMDLHQGALMLL---GPTMNPKVAFELSER 295 (447)
Q Consensus 233 ----~----~~g~---di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~---g~~~~~~~a~~~~~~ 295 (447)
. .+.. .+++.|+||.+|++|.|+ ||+++ ++++++.+...+....... .+...+.++...+..
T Consensus 238 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 316 (418)
T 3rq1_A 238 VRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRV-GAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVAD 316 (418)
T ss_dssp HHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCC-EEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcc-eEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCC
Confidence 1 1122 388899999999999999 89887 8999988876554221111 222222233333332
Q ss_pred CC-------cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013210 296 IP-------HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368 (447)
Q Consensus 296 ~~-------~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~ 368 (447)
.. .+....+++.++++.+.+.|++++.++..|. .|.++++.+.+ ...+.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~---~~~~~~~ 374 (418)
T 3rq1_A 317 PAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYR-------------------GGFFITIPTDS---ANAICEE 374 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC-------------------SSSEEEEECTT---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-------------------ceEEEEcCCCC---HHHHHHH
Confidence 21 1123345678888899999988765543221 34467777753 3455566
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHHh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~~ 439 (447)
|.. .| +.+..| .+.+|||++ . +++++.++.|.++++++
T Consensus 375 l~~---~g-i~v~~g----------------------------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 375 LKK---EH-IYVIAL----------------------------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHH---TT-EECEEC----------------------------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHT
T ss_pred HHh---CC-EEEecC----------------------------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence 654 23 343333 257999998 4 33444455555555544
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=231.72 Aligned_cols=291 Identities=14% Similarity=0.179 Sum_probs=201.1
Q ss_pred CchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhH--HHHHHhhcCcccCeeEEEeCC
Q 013210 98 NPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGT--HALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~--~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+...++++.++++++.+ .+++|+||++|+.+++++++++||+|+++.+.|.+. ...+ .. .|.++..++.
T Consensus 55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~----~~-~g~~~~~~~~ 129 (393)
T 3kgw_A 55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIA----DR-IGARVHQMIK 129 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHH----HH-TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHH----HH-cCCceEEEeC
Confidence 356678999999999874 489999999999999999999999999998887543 2222 22 5778887764
Q ss_pred C-----CHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCC
Q 013210 173 S-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSI 244 (447)
Q Consensus 173 ~-----d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~ 244 (447)
+ |+++|++++ ++ ++++|++++|+||||.+.|+++|.++|++||+++|+|++|+ ...++....++|+++.|+
T Consensus 130 ~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~ 208 (393)
T 3kgw_A 130 KPGEHYTLQEVEEGL-AQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSS 208 (393)
T ss_dssp CTTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEES
T ss_pred CCCCCCCHHHHHHHH-hhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecC
Confidence 3 899999999 54 89999999999999999999999999999999999999984 334444556899999999
Q ss_pred Ccccc-CCCCeeEEEEEcChHHHHHHHHHhhhhh-------------------hhcCCCccHH--HHH-HHHccC--CcH
Q 013210 245 SKFIS-GGADIIAGAVCGPANLVNSMMDLHQGAL-------------------MLLGPTMNPK--VAF-ELSERI--PHL 299 (447)
Q Consensus 245 sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~~-------------------~~~g~~~~~~--~a~-~~~~~~--~~l 299 (447)
||+++ +.| + |+++.++++++.+........ .....+.+.. .+. .++..+ ..+
T Consensus 209 sK~~~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 285 (393)
T 3kgw_A 209 QKVLNAPPG--I-SLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGL 285 (393)
T ss_dssp SSTTCCCSS--C-EEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred cccccCCCc--e-eEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 99774 444 5 999999999888764321100 0001122222 221 222211 225
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013210 300 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA 379 (447)
Q Consensus 300 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~ 379 (447)
....+++.++++++.+.|++++.++..+.. ....+.+++|.++.......+.+.|... +| +.
T Consensus 286 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~ 347 (393)
T 3kgw_A 286 ENCWRRHREATAHLHKHLQEMGLKFFVKDP---------------EIRLPTITTVTVPAGYNWRDIVSYVLDH--FS-IE 347 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBSSSSG---------------GGBCSSEEEEECCTTBCHHHHHHHHHHH--HC-EE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeccCCh---------------hhcCCeEEEEeCCCCCCHHHHHHHHHHh--CC-EE
Confidence 667788899999999999988665543220 0123457889886433355677776542 23 45
Q ss_pred ccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013210 380 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 380 vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~ 439 (447)
+..|.. + ..++.+|||+ + ...+++.++.+.++|+++
T Consensus 348 v~~g~~--------~---------------~~~~~iRi~~~~-~~~~~~~i~~~~~~l~~~ 384 (393)
T 3kgw_A 348 ISGGLG--------P---------------TEERVLRIGLLG-YNATTENVDRVAEALREA 384 (393)
T ss_dssp CBCCCG--------G---------------GTTTEEEEECCG-GGCCHHHHHHHHHHHHHH
T ss_pred EeCCcc--------c---------------CCCCEEEEEecc-cCCCHHHHHHHHHHHHHH
Confidence 555521 1 1247899998 7 543444555555554443
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=232.55 Aligned_cols=307 Identities=16% Similarity=0.187 Sum_probs=213.1
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+...++|+.+|+++|.+.+++|+||++|++++++++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 34 ~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~ 108 (373)
T 3frk_A 34 LGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVS-----YTGAKPIFVEPDIR 108 (373)
T ss_dssp SSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHH-----HHSCEEEEECEETT
T ss_pred CCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEecccc
Confidence 45778999999999999999999999999999999999 8999999999999999887763 258888888765
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeCCC-
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHSIS- 245 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S~s- 245 (447)
|+++|++++ ++++++|+ ++||+|.+.|+++|.++|+++|+++|+|++|+ +..++....+ .|+++.|++
T Consensus 109 ~~~~d~~~l~~~l-~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~ 184 (373)
T 3frk_A 109 TYNIDPSLIESAI-TEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYP 184 (373)
T ss_dssp TTEECGGGTGGGC-CTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred ccCcCHHHHHHhc-CCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcC
Confidence 889999999 77898888 67899999999999999999999999999994 3334444444 799999966
Q ss_pred -ccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhh------hc--CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 013210 246 -KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LL--GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 246 -K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~--g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~ 315 (447)
|+++++|. ||+++.+ +++.+.+...+.+... .. ...+....+......++.+....++..++++++.+
T Consensus 185 ~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (373)
T 3frk_A 185 AKNLGSLGD--GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIA 262 (373)
T ss_dssp TSSSCCSSS--CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CCccCccce--eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987564 5888765 5677777765442110 01 11234444444444445566667777888888888
Q ss_pred HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccc
Q 013210 316 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 395 (447)
Q Consensus 316 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~ 395 (447)
.|++.+ +..|..+.... .....+.+...+ ...+.+.|... | +.++.+....+-+.|...
T Consensus 263 ~l~~~~--~~~~~~~~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~---g-I~v~~~~~~~~~~~~~~~ 321 (373)
T 3frk_A 263 GINNPN--VIIPVEADYAK------------HVWYTFVIRSEK---RDELQKYLNNN---G-IGTLIHYPIPIHLQQAYK 321 (373)
T ss_dssp HCCCTT--EECCCCCTTEE------------CCCSSEEEEESS---HHHHHHHHHHT---T-BCCBCSCSSCGGGSGGGG
T ss_pred HhccCc--eEeccCCCCCc------------eeeEEEEEEeCC---HHHHHHHHHHC---C-CCcccCcCCccccChHHH
Confidence 887766 33332211000 011234455543 45667777653 3 566655422222222111
Q ss_pred cC----CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 396 TS----SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 396 ~~----~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.. ..++..+.. ..+.||+|++ ..+++++++.+.++|++..
T Consensus 322 ~~~~~~~~~~~~~~~----~~~~lrl~~~-~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 322 DLGFKTGNFPIAEKI----ANEILSIPIW-YGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp GGCCCTTSSHHHHHH----HHHEEEECCC-TTCCHHHHHHHHHHHHTCC
T ss_pred hcCCCCCCCHHHHHH----HhCEEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence 10 011111111 1368999999 9999999999999998764
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=235.79 Aligned_cols=216 Identities=18% Similarity=0.176 Sum_probs=158.2
Q ss_pred HHHHHHHHHHh----C-----CCeEEEeCChHHHHHHHHHHhcCCCC----eEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 102 LNLSRQMAALE----G-----TEAAYCTASGMSAISSVLMQLCSSGG----HVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 102 ~~l~~~ia~l~----g-----~~~~~~tsggt~A~~~al~~l~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
..+++.||+++ | .+.+++|+|+++|+.+++++++.+|| +|+++.|.|+.+...+. ..|.++.
T Consensus 132 ~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~-----~~g~~~v 206 (498)
T 3ihj_A 132 NCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVIS-----ELDAIQV 206 (498)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHH-----HTTCEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHH-----HcCCEEE
Confidence 34566666554 2 35699999999999999999998875 99999999999988773 2577777
Q ss_pred EeCCC-------CHHHHHHhhccC----CceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-
Q 013210 169 FVDIS-------DHEMVNSAIVQG----RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA- 233 (447)
Q Consensus 169 ~v~~~-------d~~~l~~~i~~~----~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~- 233 (447)
.++.+ |+++|+++++.. ++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+.+...
T Consensus 207 ~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~ 286 (498)
T 3ihj_A 207 NYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDC 286 (498)
T ss_dssp EEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTC
T ss_pred EeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCC
Confidence 77654 899999998332 5899999999999999986 66799999999999999999976654321
Q ss_pred ------C----C-------CCeEEEeCCCccc-cCCCCeeEEEEE---cChHHHHHHHHHhhhhhhhcCCCccHHHHHHH
Q 013210 234 ------R----L-------GADVVVHSISKFI-SGGADIIAGAVC---GPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292 (447)
Q Consensus 234 ------~----~-------g~di~~~S~sK~~-g~~g~~igG~l~---~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~ 292 (447)
. + ...+++.|+||.+ |.+|.|+ ||++ .++++++.+...... ....+.+.+.++..+
T Consensus 287 ~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~-G~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~q~a~~~~ 363 (498)
T 3ihj_A 287 RFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRG-GYMEVINLHPEIKGQLVKLLSV--RLCPPVSGQAAMDIV 363 (498)
T ss_dssp CCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCC-EEEEEESCCHHHHHHHHHHHHH--SCCCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHhcccccCceeEEEEeccccccccCcccce-EEEEEecCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHH
Confidence 0 0 1247889999999 7799998 9887 688998888766541 122223333333333
Q ss_pred Hcc-----------CCcHHHHHHHHHHHHHHHHHHHHhCC-Ceee
Q 013210 293 SER-----------IPHLGLRMKEHCHRALIFARRMKKLG-LKVL 325 (447)
Q Consensus 293 ~~~-----------~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~ 325 (447)
+.. +++.....+++.++++++.+.|++++ ..+.
T Consensus 364 l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~ 408 (498)
T 3ihj_A 364 VNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCN 408 (498)
T ss_dssp TCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC
T ss_pred hcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEec
Confidence 321 01123455678899999999998873 3443
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=235.50 Aligned_cols=288 Identities=13% Similarity=0.055 Sum_probs=198.4
Q ss_pred HHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..+++.+|++++ .+.+++|+||++|+.+++.+++ .+||.|+++.|.|+++...+. ..|.++..++.
T Consensus 137 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~~~~ 211 (500)
T 3tcm_A 137 HGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIA-----LHGGALVPYYL 211 (500)
T ss_dssp HHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHH-----HTTCEEEEEEC
T ss_pred HHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHH-----HcCCEEEEEec
Confidence 567777777752 4569999999999999999998 799999999999999988773 25777777663
Q ss_pred -------CCHHHHHHhhcc-----CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc----
Q 013210 173 -------SDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA---- 233 (447)
Q Consensus 173 -------~d~~~l~~~i~~-----~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~---- 233 (447)
.|+++|+++++. .++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+.+...
T Consensus 212 ~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~ 291 (500)
T 3tcm_A 212 NESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFH 291 (500)
T ss_dssp BTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCC
T ss_pred ccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCC
Confidence 389999999832 17899999999999999987 56777779999999999999966544210
Q ss_pred -------CC------CCeEEEeCCCccc-cCCCCeeEEEEEc---ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC
Q 013210 234 -------RL------GADVVVHSISKFI-SGGADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI 296 (447)
Q Consensus 234 -------~~------g~di~~~S~sK~~-g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~ 296 (447)
.+ ...+++.|+||.+ |.+|.|+ ||++. ++++++.+...+.. ....+...+.++..++...
T Consensus 292 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~ 368 (500)
T 3tcm_A 292 SFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG-GYFEITGFSAPVREQIYKIASV--NLCSNITGQILASLVMNPP 368 (500)
T ss_dssp CHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC-EEEEEESCCTTHHHHHHHHHHT--TCCCCHHHHHHHHHHHSCC
T ss_pred cHHHHHHHhccccCCeEEEEEecCCccCCCCCccce-EEEEEeCCCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHhcCc
Confidence 11 1247888999999 8899998 88876 88888888766541 1223333344444444321
Q ss_pred -----------CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH---
Q 013210 297 -----------PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK--- 361 (447)
Q Consensus 297 -----------~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~--- 361 (447)
+++....+++.++++.+.+.|+++ ++.+..|. .|.++++.+.-++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-------------------g~~~~~~~~~lp~~~~~ 429 (500)
T 3tcm_A 369 KASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAE-------------------GAMYVFPQICLPQKAIE 429 (500)
T ss_dssp CSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC-------------------BTTEECCEECCCHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCC-------------------eEEEEeeeecCchhhHH
Confidence 223445567888999999999887 33444332 34455544431111
Q ss_pred ---------HHHH-HHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHH
Q 013210 362 ---------ANRL-MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRW 429 (447)
Q Consensus 362 ---------~~~l-~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i 429 (447)
...+ ...|.. .| +.+..|..+.. ....+.+|||++ . +++++.+
T Consensus 430 ~~~~~g~~~~~~~~~~ll~~---~g-I~v~pg~~f~~--------------------~~g~~~iRis~~-~~~e~i~~~i 484 (500)
T 3tcm_A 430 AAKAANKAPDAFYALRLLES---TG-IVVVPGSGFGQ--------------------VPGTWHFRCTIL-PQEDKIPAVI 484 (500)
T ss_dssp HHHHHTSCHHHHHHHHHHHH---HC-EECEESTTTCC--------------------CTTCCBEEEESC-SCTTTHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHH---CC-EEEEeCcccCC--------------------CCCCCEEEEEEC-CCHHHHHHHH
Confidence 1122 233443 23 46555532210 012468999999 5 5678888
Q ss_pred HHHHHHHHHhhh
Q 013210 430 SQFEKALSRMQD 441 (447)
Q Consensus 430 ~~l~~al~~~~~ 441 (447)
+.|.++++++.+
T Consensus 485 ~~l~~~~~~~~~ 496 (500)
T 3tcm_A 485 SRFTVFHEAFMS 496 (500)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=230.87 Aligned_cols=292 Identities=13% Similarity=0.124 Sum_probs=200.3
Q ss_pred CCchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-
Q 013210 97 FNPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI- 172 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~- 172 (447)
..+...++++.+++++|.+ .+++|+||++|+.+++++++++||+|+++.++|+++. .. ..... .|.++++++.
T Consensus 50 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~~ 126 (393)
T 2huf_A 50 TLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR-SA-DMATR-YGADVRVVKSK 126 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH-HH-HHHHH-TTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH-HH-HHHHH-cCCeeEEEeCC
Confidence 3456789999999999975 4889999999999999999999999999999998853 21 22222 5888888775
Q ss_pred ----CCHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCC
Q 013210 173 ----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSIS 245 (447)
Q Consensus 173 ----~d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~s 245 (447)
.|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+ ....+...+++|+++.|+|
T Consensus 127 ~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~s 205 (393)
T 2huf_A 127 VGQSLSLDEIRDAL-LIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQ 205 (393)
T ss_dssp TTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSS
T ss_pred CCCCCCHHHHHHHH-hccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCC
Confidence 3899999999 55 79999999999999999999999999999999999999983 2233334457999999999
Q ss_pred ccc-cCCCCeeEEEEEcChHHHHHHHHHh---hhhh-----------------hhcCCC-ccHHHHH-HHHccC--CcHH
Q 013210 246 KFI-SGGADIIAGAVCGPANLVNSMMDLH---QGAL-----------------MLLGPT-MNPKVAF-ELSERI--PHLG 300 (447)
Q Consensus 246 K~~-g~~g~~igG~l~~~~~~~~~l~~~~---~~~~-----------------~~~g~~-~~~~~a~-~~~~~~--~~l~ 300 (447)
|++ |++| + |+++.++++++.+.... .... ...++. .....+. .++..+ ..+.
T Consensus 206 K~l~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 282 (393)
T 2huf_A 206 KVLGAPPG--I-TPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLP 282 (393)
T ss_dssp STTCCCSS--C-EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred cccccCCC--e-EEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 975 5566 3 88988999888876431 0000 011122 1222221 122222 1255
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013210 301 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 380 (447)
Q Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~v 380 (447)
...+++.++++++.+.|++.+.++..|.. . ..+++++|.++.......+.+.|... +| +.+
T Consensus 283 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~L~~~--~g-i~v 343 (393)
T 2huf_A 283 ALIARHEDCAKRLYRGLQDAGFELYADPK----D------------RLSTVTTIKVPQGVDWLKAAQYAMKT--YL-VEI 343 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBSSCGG----G------------BCTTEEEEECCTTCCHHHHHHHHHHH--HC-EEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcc----c------------cCCcEEEEEcCCCCCHHHHHHHHHHh--CC-EEE
Confidence 66778889999999999887655443310 0 12448889886322245676666531 23 455
Q ss_pred cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHH
Q 013210 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 381 s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~ 438 (447)
+.|.. + ..++.+|||+ + ...+++.++.+.++|++
T Consensus 344 ~~g~~--------~---------------~~~~~~Ri~~~~-~~~~~e~i~~~~~~l~~ 378 (393)
T 2huf_A 344 SGGLG--------P---------------TAGQVFRIGLMG-QNATTERVDRVLQVFQE 378 (393)
T ss_dssp BCCCG--------G---------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHH
T ss_pred ecCcc--------c---------------ccCCEEEEEccc-CcCCHHHHHHHHHHHHH
Confidence 55521 1 1257899999 6 43344444444444443
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=229.47 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHhC--------CCeEEE--eCChHHHHHHHHHHhc---CCCCeEEEeCCCchhHHHHHHhhcCcccCeeE
Q 013210 101 VLNLSRQMAALEG--------TEAAYC--TASGMSAISSVLMQLC---SSGGHVVAARTLYGGTHALLTHFFPRACNITT 167 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~--tsggt~A~~~al~~l~---~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~ 167 (447)
..++++.+|++++ .+.+++ |+||++|++++++.+. ++||+|+++.|+|.++...+. ..|.++
T Consensus 73 ~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g~~~ 147 (401)
T 7aat_A 73 LADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR-----DAGLQL 147 (401)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHH-----HTTCEE
T ss_pred CHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHH-----HcCCee
Confidence 3578888888874 456876 9999999999887664 889999999999999988773 257777
Q ss_pred EEeCCC-------CHHHHHHhhc--cCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---
Q 013210 168 TFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--- 232 (447)
Q Consensus 168 ~~v~~~-------d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--- 232 (447)
..++.+ |++++++.++ ++++++|++++||||||.+.+ +++|+++|++||+++|+|++|..+.+..
T Consensus 148 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~ 227 (401)
T 7aat_A 148 QAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINR 227 (401)
T ss_dssp EEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHH
T ss_pred EeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccc
Confidence 777642 7787776663 357899999999999998876 7788999999999999999996665432
Q ss_pred ---------cCCCCeEEEeCCCccccCCCCeeEEEEEc---ChHH----HHHHHHHhhhhhhhcCCCccHHHHHHHHcc-
Q 013210 233 ---------ARLGADVVVHSISKFISGGADIIAGAVCG---PANL----VNSMMDLHQGALMLLGPTMNPKVAFELSER- 295 (447)
Q Consensus 233 ---------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~----~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~- 295 (447)
.....++++.|+||.+|++|.|+ ||++. +++. ...+....... ....+...+..+...+..
T Consensus 228 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~Ri-G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 305 (401)
T 7aat_A 228 DAWALRHFIEQGIDVVLSQSYAKNMGLYGERA-GAFTVICRDAEEAKRVESQLKILIRPM-YSNPPMNGARIASLILNTP 305 (401)
T ss_dssp HTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHCH
T ss_pred cHHHHHHHHhcCCcEEEEecCCcccccccCce-EEEEEEeCCHHHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHhCCH
Confidence 12256799999999999999999 88764 5553 34444333311 111121222222222221
Q ss_pred ------CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 296 ------IPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 296 ------~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
.+++.+..+++.++++++.+.|++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 306 ELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22344556678899999999998874
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=242.77 Aligned_cols=293 Identities=12% Similarity=0.095 Sum_probs=201.5
Q ss_pred chHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCC---eEEEeCCCchhHHHHHHhhcCcccCeeE-----E
Q 013210 99 PTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGG---HVVAARTLYGGTHALLTHFFPRACNITT-----T 168 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd---~Vi~~~~~y~~~~~~~~~~~~~~~g~~~-----~ 168 (447)
...+++++.+|+++|++ .+++|+|+++++++++.+++++|+ +|+++.++|++....+...... .|.++ .
T Consensus 111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~-~G~~~~~~~v~ 189 (465)
T 3e9k_A 111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQL-HGLNIEESMRM 189 (465)
T ss_dssp GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHH-TTCCHHHHEEE
T ss_pred HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHH-cCCcceeeeEE
Confidence 44477999999999975 599999999999999999987654 5999999999977655433332 45543 3
Q ss_pred EeCCC-----CHHHHHHhhc--cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeE
Q 013210 169 FVDIS-----DHEMVNSAIV--QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADV 239 (447)
Q Consensus 169 ~v~~~-----d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di 239 (447)
.++.+ |+++|+++++ .+++++|++++++||||.+.|+++|.++|++||+++|+|++|+ ....+..++++|+
T Consensus 190 ~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~ 269 (465)
T 3e9k_A 190 IKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDF 269 (465)
T ss_dssp ECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCE
T ss_pred EecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCE
Confidence 33332 7999999994 1689999999999999999999999999999999999999993 3344445568999
Q ss_pred EEeCCCcccc-CCCCeeEEEEEcChHHHHHHHHHhhhh---------------------hhhcCCCccHHHHH---HHHc
Q 013210 240 VVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA---------------------LMLLGPTMNPKVAF---ELSE 294 (447)
Q Consensus 240 ~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~---------------------~~~~g~~~~~~~a~---~~~~ 294 (447)
++.|+||+++ +++ .+ |+++.++++++.+.....++ .....++++..... .++.
T Consensus 270 ~~~s~~K~l~~gp~-~~-g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~ 347 (465)
T 3e9k_A 270 ACWCSYKYLNAGAG-GI-AGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLE 347 (465)
T ss_dssp EEECSSSTTCCCTT-CC-CEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHH
T ss_pred EEECcccccccCCC-ce-EEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHH
Confidence 9999999993 454 35 77888877765443211110 00001122222211 1222
Q ss_pred cCC--cHHHHHHHHHHHHHHHHHHHHhC-----------CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH
Q 013210 295 RIP--HLGLRMKEHCHRALIFARRMKKL-----------GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK 361 (447)
Q Consensus 295 ~~~--~l~~~~~~~~~~~~~l~~~L~~~-----------~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~ 361 (447)
.+. .+....++..++++++.+.|+++ +.++..|.. +. +.|++++|.++. .
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~---~~------------~~g~~~~~~~~~--~ 410 (465)
T 3e9k_A 348 IFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSH---VE------------ERGCQLTITFSV--P 410 (465)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSS---GG------------GBCSCEEEEECC--T
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCC---Hh------------hcccEEEEEecC--C
Confidence 211 24556677888889999999873 345554431 11 357799999872 2
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHhh
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~~ 440 (447)
...+.+.|... | +.+..+ .++.||||+ + ..++++.++.+.++|+++.
T Consensus 411 ~~~l~~~L~~~---G-i~v~~~---------------------------~~~~iRis~~~-~~~t~edi~~~~~~l~~~l 458 (465)
T 3e9k_A 411 NKDVFQELEKR---G-VVCDKR---------------------------NPNGIRVAPVP-LYNSFHDVYKFTNLLTSIL 458 (465)
T ss_dssp TCCHHHHHHTT---T-EECEEE---------------------------TTTEEEEBCCT-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---C-EEEecC---------------------------CCCEEEEeCcc-cCCCHHHHHHHHHHHHHHH
Confidence 34566666652 3 333311 147899999 7 7888888888888888775
Q ss_pred hcC
Q 013210 441 DSG 443 (447)
Q Consensus 441 ~~~ 443 (447)
+..
T Consensus 459 ~~~ 461 (465)
T 3e9k_A 459 DSA 461 (465)
T ss_dssp TC-
T ss_pred Hhc
Confidence 543
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-26 Score=225.96 Aligned_cols=311 Identities=17% Similarity=0.190 Sum_probs=213.4
Q ss_pred cCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 94 SRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 94 ~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
++...+...++++.+|+++|.+..+++++|++|++++++++ +++||+|+++.++|+++...+. ..|.++++++.
T Consensus 33 ~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~~v~~ 107 (388)
T 1b9h_A 33 WRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQ-----RLGAVTVPVDV 107 (388)
T ss_dssp BTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECB
T ss_pred eecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHH-----HcCCEEEEEec
Confidence 34456778999999999999988788888899999999998 8899999999999999987763 26888888875
Q ss_pred C------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCC---ccCCCCeEEEe
Q 013210 173 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS---PARLGADVVVH 242 (447)
Q Consensus 173 ~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~---~~~~g~di~~~ 242 (447)
+ |+++|++++ ++++++|+ |+||+|.+.|+++|.++|+++|+++|+|++|+. .... ...++ |+++.
T Consensus 108 ~~~~~~~d~~~l~~~i-~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~ 182 (388)
T 1b9h_A 108 DAATYNLDPEAVAAAV-TPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATF 182 (388)
T ss_dssp CTTTCCBCHHHHHHHC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEE
T ss_pred CCCcCCCCHHHHHHhc-CcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEE
Confidence 3 899999999 77888887 899999999999999999999999999999953 3322 22334 56666
Q ss_pred CCC--ccccCCCCeeEEEEEcChH-H--HHHHHHHhhhhh---------hhcCC--CccHHHHHHHHccCCcHHHHHHHH
Q 013210 243 SIS--KFISGGADIIAGAVCGPAN-L--VNSMMDLHQGAL---------MLLGP--TMNPKVAFELSERIPHLGLRMKEH 306 (447)
Q Consensus 243 S~s--K~~g~~g~~igG~l~~~~~-~--~~~l~~~~~~~~---------~~~g~--~~~~~~a~~~~~~~~~l~~~~~~~ 306 (447)
|+| |++++ .+ ||+++.+++ + ++.+...+.... ...|. .+++..++.....++.+.+..+++
T Consensus 183 S~s~~K~l~g--~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~ 259 (388)
T 1b9h_A 183 SFQNGKLMTA--GE-GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVR 259 (388)
T ss_dssp ECCTTSSSCS--SS-CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHH
T ss_pred EccCCCcccC--CC-eEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 665 66654 35 499887765 5 566654332110 01122 245555444445567777788888
Q ss_pred HHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhccccccccccccc
Q 013210 307 CHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 307 ~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
.++++++.+.|+++ +..+..+.....+ ..+.+++|.+++. .....+.+.|... | +.++.+
T Consensus 260 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g-I~v~~~ 322 (388)
T 1b9h_A 260 DERWTLLSRLLGAIDGVVPQGGDVRADR-------------NSHYMAMFRIPGLTEERRNALVDRLVEA---G-LPAFAA 322 (388)
T ss_dssp HHHHHHHHHHHHTSTTCEECCCCTTCCB-------------CCCSEEEEECTTCCHHHHHHHHHHHHHT---T-CCEEEC
T ss_pred HHHHHHHHHHhccCCCccccCCCcCCCc-------------cceEEEEEEeCCcCcccHHHHHHHHHHC---C-CCcccc
Confidence 89999999999987 4454432110001 2356999999742 3467788888753 3 566655
Q ss_pred Ccccccccccccc--CC---------CCCHHHHHhcCCCCCeEEEEeCCCCC-HHHHHHHHHHHHHHhh
Q 013210 384 YYETLMSCSGSST--SS---------ELNAEEKALAGISAGLVRMSVGYLGT-LDQRWSQFEKALSRMQ 440 (447)
Q Consensus 384 ~~~s~~~~~a~~~--~~---------~~~~~~~~~~g~~~~~iRiS~g~~~~-~~~~i~~l~~al~~~~ 440 (447)
..-+. ..+.... .. .++..... ..+.|||+++ ... ++++++.+.++|+++.
T Consensus 323 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~l~~~-~~~~t~edi~~~~~~l~~~~ 385 (388)
T 1b9h_A 323 FRAIY-RTDAFWELGAPDESVDAIARRCPNTDAI----SSDCVWLHHR-VLLAGEPELHATAEIIADAV 385 (388)
T ss_dssp CCCGG-GSHHHHHSSCCSSCHHHHHHTCHHHHHH----HHHEEEEEGG-GGGSCHHHHHHHHHHHHHHH
T ss_pred cCccc-cChHhHhcCCCcccccccccCCHHHHHH----HhCeEEecCC-CCCCCHHHHHHHHHHHHHHH
Confidence 32110 0010000 00 01111111 1357999999 888 8999999999888764
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=223.64 Aligned_cols=262 Identities=16% Similarity=0.165 Sum_probs=192.3
Q ss_pred hHHHHHHHHHHHhC---C--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 100 TVLNLSRQMAALEG---T--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 100 ~~~~l~~~ia~l~g---~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
...++++.+|++++ . +.+++|+|+++|++++++++ ||+|+++ |.|+++...+. ..|.++..++.+
T Consensus 57 ~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~-----~~g~~~~~v~~~~ 127 (335)
T 1uu1_A 57 PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAK-----AVGAKFLEVPLTK 127 (335)
T ss_dssp SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHHHH-----HHTCEEEECCCCT
T ss_pred chHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHH-----HcCCeEEEeccCC
Confidence 35789999999998 4 56999999999999999887 8999999 99999887663 257888887754
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC----C-ccCCCCeEEEeCC
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL----S-PARLGADVVVHSI 244 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~----~-~~~~g~di~~~S~ 244 (447)
|+++| +++++|++++|+||||.+.|.+++.++++..| ++|+|++|+.+.. + ....+.++++.|+
T Consensus 128 ~~~~d~~~l------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~ 200 (335)
T 1uu1_A 128 DLRIPEVNV------GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTF 200 (335)
T ss_dssp TSCCCCCCC------CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEES
T ss_pred CCCCCHHHc------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecc
Confidence 33332 47899999999999999999999999999889 9999999953322 1 1223678999999
Q ss_pred CccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013210 245 SKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKV 324 (447)
Q Consensus 245 sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v 324 (447)
||++|++|.|+ ||+++++++++.+...+.. ...+.+.+.++..++...+++....+++.++++++.+.|++++..+
T Consensus 201 sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 276 (335)
T 1uu1_A 201 SKAFSLAAQRV-GYVVASEKFIDAYNRVRLP---FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRI 276 (335)
T ss_dssp TTTTTCGGGCC-EEEEECHHHHHHHHHHSCT---TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred hhhcCCcccCe-EEEEeCHHHHHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 99999899998 9999999998888776541 2233333444444444333456677778899999999998765443
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHH
Q 013210 325 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404 (447)
Q Consensus 325 ~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~ 404 (447)
.|. .|.++++.++. .+...+.+.|... | +.++.
T Consensus 277 -~~~-------------------~~~~~~~~~~~-~~~~~~~~~l~~~---g-i~v~~---------------------- 309 (335)
T 1uu1_A 277 -TDS-------------------RGNFVFVFMEK-EEKERLLEHLRTK---N-VAVRS---------------------- 309 (335)
T ss_dssp -CCC-------------------CSSEEEEECCT-HHHHHHHHHHHHH---T-EEEEE----------------------
T ss_pred -cCC-------------------CCeEEEEECCC-CCHHHHHHHHHHC---C-EEEEE----------------------
Confidence 222 35588899876 3356677777652 3 23221
Q ss_pred HHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 405 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 405 ~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.++.+|||++ . .+.++.+.++|++
T Consensus 310 ------~~~~iRis~~-~---~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 310 ------FREGVRITIG-K---REENDMILRELEV 333 (335)
T ss_dssp ------ETTEEEEECC-C---HHHHHHHHHHHHC
T ss_pred ------CCCeEEEEeC-C---HHHHHHHHHHHHh
Confidence 1367999999 4 2346666666654
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=231.18 Aligned_cols=288 Identities=13% Similarity=0.100 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHHH--HHHHHhcC--C---------CCeEEEeCCCchhHHHHHHhhcCcccCe
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAIS--SVLMQLCS--S---------GGHVVAARTLYGGTHALLTHFFPRACNI 165 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~~--~al~~l~~--~---------gd~Vi~~~~~y~~~~~~~~~~~~~~~g~ 165 (447)
..++++.+|++++++ .+++|+|++++++ +++++++. + ||+|+++.|.|+++...+. ..|.
T Consensus 72 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~ 146 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ-----TLGF 146 (423)
T ss_dssp CHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHH-----HHTC
T ss_pred hHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHH-----HcCC
Confidence 468999999999864 6999999999998 88888877 7 5999999999999987773 2577
Q ss_pred eEEEeCCC----CHHHHHHhhc-cCCceEEEEE-cCCCCCccccCHH---HHHHHH-HhcCCEEEEeCCCCCCCCCc---
Q 013210 166 TTTFVDIS----DHEMVNSAIV-QGRTKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVDNTFSPLVLSP--- 232 (447)
Q Consensus 166 ~~~~v~~~----d~~~l~~~i~-~~~t~lV~i~-~~~NptG~v~~l~---~I~~la-~~~gi~livD~~~~~~~~~~--- 232 (447)
++..++.+ |+++|+++++ ++++++|+++ +|+||||.+++.+ +|+++| ++||+++|+|++|..+.+..
T Consensus 147 ~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~ 226 (423)
T 3ez1_A 147 ELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDR 226 (423)
T ss_dssp EEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSC
T ss_pred EEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCC
Confidence 77776653 8999999995 4689999865 8999999999876 888888 89999999999996322111
Q ss_pred -------------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CC-
Q 013210 233 -------------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IP- 297 (447)
Q Consensus 233 -------------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~- 297 (447)
...+.++++.|+||+ +++|.|+ ||++.++++++.+...+... ....+.+.+.++...+.. ..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~ 303 (423)
T 3ez1_A 227 AEPVNFVVLARDAGYPDRAFVFASTSKI-TFAGAGL-GFVASSEDNIRWLSKYLGAQ-SIGPNKVEQARHVKFLTEYPGG 303 (423)
T ss_dssp CCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSSSSC-EEEEECHHHHHHHHHHHHHS-CSCCCHHHHHHHHHHHHHSTTH
T ss_pred CCCcchhhhhhccCCCCeEEEEeCchhh-ccCCcce-EEEEeCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHHhccch
Confidence 123678999999999 5679998 99999999999888766521 122333444444444444 22
Q ss_pred ---cHHHHHHHHHHHHHHHHHHHHh----CC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013210 298 ---HLGLRMKEHCHRALIFARRMKK----LG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368 (447)
Q Consensus 298 ---~l~~~~~~~~~~~~~l~~~L~~----~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~ 368 (447)
++....+.+.++++.+.+.|.+ .+ ..+..|. .|.++++.++.. ....+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~ 363 (423)
T 3ez1_A 304 LEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK-------------------GGYFISLDTAEP-VADRVVKL 363 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS-------------------BSSCEEEEESSS-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC-------------------ccEEEEEECCCC-cHHHHHHH
Confidence 2333344456666666666654 44 2443332 466899999743 24566666
Q ss_pred hhcccccccccccc-cCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHh
Q 013210 369 LQNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRM 439 (447)
Q Consensus 369 l~~~~~~g~~~vs~-G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~ 439 (447)
|.. .| +.+.. |..+.. . .+..++.||||++ .. ++++.++.|.++++++
T Consensus 364 l~~---~g-v~v~~~g~~~~~----~--------------~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 364 AEA---AG-VSLTPAGATYPA----G--------------QDPHNRNLRLAPT-RPPVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp HHH---TT-EECCCTTTTSST----T--------------CCSSSCEEEECCS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH---CC-cEEecCcccccC----C--------------CCCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 665 34 45554 322100 0 0113588999999 64 3344455555555544
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=228.67 Aligned_cols=291 Identities=13% Similarity=0.151 Sum_probs=198.9
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-------CCCCeEEEeCCCchhHHHHHHhh-----
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC-------SSGGHVVAARTLYGGTHALLTHF----- 158 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~-------~~gd~Vi~~~~~y~~~~~~~~~~----- 158 (447)
|.++++.++..+++++++++++|.+.++||+||++|+..+++.+. .++++|++..+.|++........
T Consensus 70 ~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 149 (395)
T 3nx3_A 70 HTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEK 149 (395)
T ss_dssp CCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHH
T ss_pred ccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcc
Confidence 444556678889999999999999999999999999999998765 34789999999998765333111
Q ss_pred ----cCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013210 159 ----FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL 230 (447)
Q Consensus 159 ----~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~ 230 (447)
... .+..+..++.+|+++|++++ ++++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++..
T Consensus 150 ~~~~~~~-~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~ 227 (395)
T 3nx3_A 150 YQKPFKP-LISGVKFAKYNDISSVEKLV-NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR 227 (395)
T ss_dssp HHGGGCS-CCSCEEEECTTCHHHHHTTC-CTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred cccccCC-CCCCcEEeCCCCHHHHHHhc-cCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCc
Confidence 111 34567788888999999999 788999999999999999987 99999999999999999999965532
Q ss_pred C-----cc--CCCCeEEEeCCCccccCCCCeeEEEEEcChHH-HHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHH
Q 013210 231 S-----PA--RLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR 302 (447)
Q Consensus 231 ~-----~~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~ 302 (447)
. .. ....|++ |+||.+++ |.++ |++++++++ ++.+..... .....++.+.+.++..++..++. ...
T Consensus 228 ~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~aa~aal~~~~~-~~~ 301 (395)
T 3nx3_A 228 SGKFFAYEHAQILPDIM--TSAKALGC-GLSV-GAFVINQKVASNSLEAGDH-GSTYGGNPLVCAGVNAVFEIFKE-EKI 301 (395)
T ss_dssp TSSSSGGGGGTCCCSEE--EECGGGTT-TSCC-EEEEECHHHHHHHSCTTCC-SSCBSCCHHHHHHHHHHHHHHHH-TTH
T ss_pred CCcchhHHhcCCCCCEE--EecccccC-CCce-EEEEEchhhhhhhcCCccc-CCCCCCCHHHHHHHHHHHHHHHh-hHH
Confidence 1 11 2234554 57899986 8888 899999988 776654322 11122333333333333332111 123
Q ss_pred HHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013210 303 MKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM 378 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~ 378 (447)
.++..++.+++.+.|++ ++.....+ +.|.++++.+++......+.+.|... | +
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~l~~~---G-i 358 (395)
T 3nx3_A 302 LENVNKLTPYLEQSLDELINEFDFCKKRK-------------------GLGFMQGLSLDKSVKVAKVIQKCQEN---A-L 358 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEECTTSCHHHHHHHHHHT---T-E
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------eEEEEEEEEeCCcchHHHHHHHHHHC---C-C
Confidence 34444555555555543 33211111 35679999998543456777777653 3 3
Q ss_pred cccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 379 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 379 ~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.++.+ +++.||||++ ...+++.++.+.++|+++-
T Consensus 359 ~v~~~---------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~~l 392 (395)
T 3nx3_A 359 LLISC---------------------------GENDLRFLPP-LILQKEHIDEMSEKLRKAL 392 (395)
T ss_dssp ECEEE---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHHH
T ss_pred EEecC---------------------------CCCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 33322 1478999998 7777777777777776653
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=242.04 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=128.3
Q ss_pred HHHHHHHHHHh----CC-------CeEEEeCChHHHHHHHHHH-----hcCCCCeEEEeCCCchhHHHHHHhhcCcccCe
Q 013210 102 LNLSRQMAALE----GT-------EAAYCTASGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNI 165 (447)
Q Consensus 102 ~~l~~~ia~l~----g~-------~~~~~tsggt~A~~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~ 165 (447)
.++++.+|+++ +. +.+++|+||++|+.+++.+ ++++||+|+++.|+|+++...+ +..|.
T Consensus 141 ~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~-----~~~g~ 215 (533)
T 3f6t_A 141 VNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIP-----ELKDY 215 (533)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSG-----GGGGS
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHH-----HHcCC
Confidence 46777777765 33 5799999999999999998 7889999999999999887655 22577
Q ss_pred eEEEeCCC---------CHHHHHHhhccCCceEEEEEcCCCCCccccCHH---HHHHHHH-hcCCEEEEeCCCCCCCCCc
Q 013210 166 TTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 166 ~~~~v~~~---------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~---~I~~la~-~~gi~livD~~~~~~~~~~ 232 (447)
.+..++.+ |+++|++++ ++++++|++++|+||||.+++.+ +|+++|+ +||+++|+|++|+.+....
T Consensus 216 ~~~~v~~~~~~~~~~~~d~~~l~~~l-~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~ 294 (533)
T 3f6t_A 216 ELVEVDLHSYEKNDWEIEPNEIEKLK-DPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF 294 (533)
T ss_dssp EEEEECCCEETTTTSEECHHHHHHHS-CTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC
T ss_pred eEEEEEecCCcccCCCCCHHHHHHHh-CCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc
Confidence 77777653 899999999 78999999999999999999866 7888888 6899999999997665432
Q ss_pred cC-----CCCeEEEeCCCccccCCCCeeEEEEEcChH
Q 013210 233 AR-----LGADVVVHSISKFISGGADIIAGAVCGPAN 264 (447)
Q Consensus 233 ~~-----~g~di~~~S~sK~~g~~g~~igG~l~~~~~ 264 (447)
.. .+.++++.|+||.+|++|.|+ ||++++++
T Consensus 295 ~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~~~~~ 330 (533)
T 3f6t_A 295 KSIYSVVPYNTMLVYSYSKLFGCTGWRL-GVIALNEK 330 (533)
T ss_dssp CCHHHHSGGGEEEEEESHHHHTCGGGCE-EEEEEESS
T ss_pred cCHhhcCCCCEEEEecCcccCCCcccce-EEEEECcH
Confidence 21 256799999999999999999 88887654
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=235.10 Aligned_cols=291 Identities=15% Similarity=0.152 Sum_probs=200.5
Q ss_pred cCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhhcCc----
Q 013210 94 SRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR---- 161 (447)
Q Consensus 94 ~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~---- 161 (447)
..+..+...++++.+++++|.+.+++|+||++|+.++++.++. +| |+|++..+.|+++..........
T Consensus 76 ~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~ 155 (406)
T 4adb_A 76 NGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYS 155 (406)
T ss_dssp TTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGT
T ss_pred CCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCcccc
Confidence 3445677899999999999999999999999999999998764 55 89999999999875444222110
Q ss_pred ----ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc-----CHHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013210 162 ----ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA-----NIPELSRLAHDKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 162 ----~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~-----~l~~I~~la~~~gi~livD~~~~~~~~~~ 232 (447)
..+..+..++.+|+++|++++ ++++++|+++ |+||+|.+. ++++|.++|++||+++|+|++|+++....
T Consensus 156 ~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g 233 (406)
T 4adb_A 156 QDFAPLPADIRHAAYNDINSASALI-DDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG 233 (406)
T ss_dssp GGGCSCCSSEEEECTTCHHHHHTTC-STTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred ccCCCCCCCceEeCCCcHHHHHHHh-cCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 012466777888999999999 7889999999 899999765 58999999999999999999996553321
Q ss_pred -------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHH
Q 013210 233 -------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 233 -------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
.....|++ |+||.++ +|.|+ |++++++++++.+...... ....++.+.+.++...+..++. ....++
T Consensus 234 ~~~~~~~~~~~~d~~--t~sK~~~-~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~-~~~~~~ 307 (406)
T 4adb_A 234 ELYAYMHYGVTPDLL--TTAKALG-GGFPV-GALLATEECARVMTVGTHG-TTYGGNPLASAVAGKVLELINT-PEMLNG 307 (406)
T ss_dssp SSSHHHHHTCCCSEE--EECGGGG-TTSCC-EEEEECHHHHHTCCTTSSC-CSSTTCHHHHHHHHHHHHHHSS-HHHHHH
T ss_pred hhHHHHhcCCCCCEE--Eechhhc-CCCCe-EEEEEcHHHHhhhccCCcC-CCCCCCHHHHHHHHHHHHHHHh-cCHHHH
Confidence 12345666 5799999 78898 9999999988777644331 1122333333333333333332 456677
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH--HHHHHHHHhhccccccccccccc
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE--KANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~--~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
+.++++++.+.|++.+... +... ...+.|.++++.++... ....+.+.|... | +.+..+
T Consensus 308 ~~~~~~~l~~~l~~~~~~~--~~~~-------------~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~~ 368 (406)
T 4adb_A 308 VKQRHDWFVERLNTINHRY--GLFS-------------EVRGLGLLIGCVLNADYAGQAKQISQEAAKA---G-VMVLIA 368 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CCEE-------------EEEEETTEEEEEECTTTTTCHHHHHHHHHHT---T-EECEES
T ss_pred HHHHHHHHHHHHHHHHHhC--CCce-------------EEEEEEEEEEEEEeCCcHHHHHHHHHHHHHC---C-cEEeec
Confidence 8888888888887653211 0000 00135779999998531 356777777752 3 333322
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+||+++ ...+++.++.+.++|+++
T Consensus 369 ---------------------------~~~~iRi~~~-~~~~~e~i~~~~~~l~~~ 396 (406)
T 4adb_A 369 ---------------------------GGNVVRFAPA-LNVSEEEVTTGLDRFAAA 396 (406)
T ss_dssp ---------------------------STTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1478999888 655555555555555443
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=226.54 Aligned_cols=285 Identities=17% Similarity=0.145 Sum_probs=195.2
Q ss_pred chHHHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 99 PTVLNLSRQMAALEGTE----AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
....++++.+++++|.+ .+++|+||++|+.++++++++ |+|+++.++|+++ ... ..... .|.++..++.+
T Consensus 33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~-~~~-~~~~~-~g~~~~~v~~~~ 107 (353)
T 2yrr_A 33 RVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQ-RVA-EMAAL-HGLDPEVLDFPP 107 (353)
T ss_dssp HHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHH-HHH-HHHHH-TTCCEEEEECCT
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchH-HHH-HHHHH-cCCceEEEeCCC
Confidence 44789999999999973 499999999999999998876 8999999999986 222 22222 57888887753
Q ss_pred ----CHHHHHHhhccC-CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC--CCCCccCCCCeEEEeCCCc
Q 013210 174 ----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISK 246 (447)
Q Consensus 174 ----d~~~l~~~i~~~-~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~--~~~~~~~~g~di~~~S~sK 246 (447)
|+++|++++ ++ ++++|++++++||||.+.|+++|.++|++||+++|+|++|+. ...+...+++|+++.|+||
T Consensus 108 ~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K 186 (353)
T 2yrr_A 108 GEPVDPEAVARAL-KRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQK 186 (353)
T ss_dssp TSCCCHHHHHHHH-HHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTS
T ss_pred CCCCCHHHHHHHH-HhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcc
Confidence 899999999 55 799999999999999999999999999999999999999932 2223333478999999999
Q ss_pred ccc-CCCCeeEEEEEcChHHHHHHHH-------------HhhhhhhhcCCCccHH--HH-HHHHccC--CcHHHHHHHHH
Q 013210 247 FIS-GGADIIAGAVCGPANLVNSMMD-------------LHQGALMLLGPTMNPK--VA-FELSERI--PHLGLRMKEHC 307 (447)
Q Consensus 247 ~~g-~~g~~igG~l~~~~~~~~~l~~-------------~~~~~~~~~g~~~~~~--~a-~~~~~~~--~~l~~~~~~~~ 307 (447)
+++ ++| + |+++.++++++.+.. ... .....+ +.+.. .+ ..++..+ ..+....+++.
T Consensus 187 ~~~~~~g--~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 261 (353)
T 2yrr_A 187 CLSAPPG--L-APIAASLEARKAFTGKRGWYLDLARVAEHWE-RGGYHH-TTPVLLHYALLEALDLVLEEGVAARERRAR 261 (353)
T ss_dssp TTCCCSS--C-EEEEECHHHHHHCCCCSCSTTCHHHHHHHHT-TCCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cccCCCc--e-EEEEECHHHHHHhccCCCccccHHHHhhhhh-cCCCCC-CCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 654 455 4 999999988766531 000 011222 22222 21 1222221 12455677888
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccc
Q 013210 308 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 308 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++++++.+.|++.+.++..+. . ..+.+++|.++.......+.+.|... | +.+..|..
T Consensus 262 ~~~~~l~~~L~~~g~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~-- 318 (353)
T 2yrr_A 262 EVYAWVLEELKARGFRPYPKA--S---------------PLPTVLVVRPPEGVDADRLVRALYAE---G-VAVAGGIG-- 318 (353)
T ss_dssp HHHHHHHHHHHHTTCEESCSS--S---------------BCTTEEEEECCTTCCHHHHHHHHHHT---T-EECEECCG--
T ss_pred HHHHHHHHHHHHCCCccccCc--c---------------CCCeEEEEECCCCCCHHHHHHHHHHC---C-EEEeCCcc--
Confidence 999999999988765554321 0 13457889986322345677777653 3 45555521
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH-HHHHHHHHh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS-QFEKALSRM 439 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~-~l~~al~~~ 439 (447)
+ ..++.+|||++ ...+++.++ .+.++|+++
T Consensus 319 ------~---------------~~~~~iRi~~~-~~~~~~~~~~~~~~~l~~~ 349 (353)
T 2yrr_A 319 ------P---------------TRGQVLRLGLM-GEGARREAYQAFLKALDRA 349 (353)
T ss_dssp ------G---------------GTTTCEEEECS-GGGSCHHHHHHHHHHHHHH
T ss_pred ------c---------------cCCCeEEEecC-ccCCHHHHHHHHHHHHHHH
Confidence 1 02468999995 433333344 666666554
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=225.42 Aligned_cols=284 Identities=9% Similarity=0.032 Sum_probs=199.3
Q ss_pred chHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 99 PTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
+..+++++.+++++|. +.+++|+||++|++++++++.++ +.+++..+.|..... ..... .|.+++.++.+
T Consensus 43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~---~~~~~-~g~~~~~v~~~~~ 117 (362)
T 3ffr_A 43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSKRFY---EFAGE-LGREAYKEEAAFG 117 (362)
T ss_dssp HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHHHHH---HHHHH-TTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHHHHH---HHHHH-hCCCeEEEecCCC
Confidence 5678899999999986 34999999999999999999877 444444444441111 12223 58888887754
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc-CCEEEEeCCCCCCC--CCccCCCCeEEEeCCCcc
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTFSPLV--LSPARLGADVVVHSISKF 247 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~-gi~livD~~~~~~~--~~~~~~g~di~~~S~sK~ 247 (447)
|+++|+ + +++|++|++++|+||||.+.|+++|.++|++| |+++|+|++|+... .+.. .+|+++.|+||+
T Consensus 118 ~~~d~~~l~--~-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~--~~d~~~~s~~K~ 192 (362)
T 3ffr_A 118 KGFYPADIT--V-PADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWT--KIDSVFFSVQKC 192 (362)
T ss_dssp CCCCGGGCC--C-CTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTT--SCSEEEEETTST
T ss_pred CCCCHHHHh--c-cCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChh--HCcEEEEecccc
Confidence 778887 5 78899999999999999999999999999999 99999999984322 2222 289999999999
Q ss_pred cc-CCCCeeEEEEEcChHHHHHHHHHhhhhh------------------hhcCCCc-cHH-HHHHHHccC--CcHHHHHH
Q 013210 248 IS-GGADIIAGAVCGPANLVNSMMDLHQGAL------------------MLLGPTM-NPK-VAFELSERI--PHLGLRMK 304 (447)
Q Consensus 248 ~g-~~g~~igG~l~~~~~~~~~l~~~~~~~~------------------~~~g~~~-~~~-~a~~~~~~~--~~l~~~~~ 304 (447)
++ ++| + |+++.++++++.+.....+.. ...++.. ... ++..++..+ ..+..+.+
T Consensus 193 ~~~~~G--~-g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 269 (362)
T 3ffr_A 193 FGLPAG--L-GVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRK 269 (362)
T ss_dssp TCCCSC--C-EEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCCCCc--e-EEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHH
Confidence 99 666 3 788888888887766543100 0012111 111 121222211 12566778
Q ss_pred HHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013210 305 EHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
++.++++++.+.|+++ +.++..|. +. ...+.+++|.+++ +...+.+.|... | +.++.|
T Consensus 270 ~~~~~~~~l~~~L~~~~g~~~~~~~-~~--------------~~~~~~~~~~~~~--~~~~~~~~l~~~---g-i~~~~g 328 (362)
T 3ffr_A 270 QTEEKAALINTYIESSKVFSFGVED-AK--------------LRSMTTIVANTTM--LPGEINKILEPF---D-MAVGAG 328 (362)
T ss_dssp HHHHHHHHHHHHHHHCSSEEESSSC-GG--------------GBCSSEEEEEESS--CHHHHHHHHGGG---T-EEEEEC
T ss_pred HHHHHHHHHHHHHHHccCceeccCC-hh--------------hcCCceEEEecCC--CHHHHHHHHHHC---C-eEEecC
Confidence 8899999999999998 44554322 00 0235689999986 467788888763 3 455544
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.. + ..++.||||++ ..++++.++.+.++|+++.
T Consensus 329 ~~--------~---------------~~~~~iRis~~-~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 329 YG--------S---------------KKETQIRIANF-PAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp SG--------G---------------GTTTEEEEECC-TTSCHHHHHHHHHHHHHHT
T ss_pred cc--------c---------------cCCCEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence 11 1 12478999999 8889999999999988753
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=228.87 Aligned_cols=312 Identities=16% Similarity=0.217 Sum_probs=214.5
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+...++++.+|++++.+.+++|+||++|+.++++++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~ 110 (374)
T 3uwc_A 36 LGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIV-----QAGATPVLVDSENG 110 (374)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTT
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCC
Confidence 35678999999999999999999999999999999999 8999999999999999987763 268889888875
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCCccCCC--CeEEEeCCC--
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLG--ADVVVHSIS-- 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~~~~~g--~di~~~S~s-- 245 (447)
|++++++++ ++++++|+ |+||+|.+.|+++|.++|+++|+++|+|++|+. ..++....+ .|+++.|+|
T Consensus 111 ~~~d~~~l~~~~-~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~ 186 (374)
T 3uwc_A 111 YVIDPEKIEAAI-TDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPL 186 (374)
T ss_dssp SSBCGGGTGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSS
T ss_pred CCcCHHHHHHhC-CCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCC
Confidence 899999998 67888888 899999999999999999999999999999943 233333333 799999977
Q ss_pred ccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh------hcC--CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 246 KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 246 K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
|+++++|. ||+++. ++++.+.+...+..... ..+ ..+....+......++.+....++..++++++.+.
T Consensus 187 K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~ 264 (374)
T 3uwc_A 187 KNLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQS 264 (374)
T ss_dssp SSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHH
T ss_pred CcCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997664 488776 45677777665431100 011 12344444444445566777777888888899999
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccccc
Q 013210 317 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 396 (447)
Q Consensus 317 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~ 396 (447)
|++.+..+..+..+.... ..-..+.+...+ ...+.+.|... | +.++.|....+...|....
T Consensus 265 l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~---g-i~v~~~~~~~~~~~~~~~~ 325 (374)
T 3uwc_A 265 FVDLSEFIDVPVRREGVY------------HVFHIYVLRVKY---RDQLFQYLKDN---G-IEVKIHYPIAMHLQPAAKS 325 (374)
T ss_dssp TGGGTTTEECCCCCTTEE------------CCCSSEEEEETT---HHHHHHHHHHT---T-BCCBCSCSSCGGGSGGGGG
T ss_pred hccCCCeEEeccCCCCCc------------eeeEEEEEEcCC---HHHHHHHHHHC---C-CccccCCCCccccChhhhh
Confidence 987652022222111000 000134444443 45666777653 3 5666664222211121110
Q ss_pred ----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcC
Q 013210 397 ----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSG 443 (447)
Q Consensus 397 ----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~ 443 (447)
....+.... ...+.|||+++ ...++++++.+.++|+++.+..
T Consensus 326 ~~~~~~~~~~~~~----~~~~~lrl~~~-~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 326 LGYQQGDFPMAEK----HGEAVITLPAH-PYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp GCCCTTSCHHHHH----HHHHEEEECCC-TTSCHHHHHHHHHHHHHHHHTT
T ss_pred cCCccCCCccHHH----HHhCEEEccCC-CCCCHHHHHHHHHHHHHHHHhh
Confidence 001111111 11367999999 9999999999999998876543
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=229.64 Aligned_cols=309 Identities=14% Similarity=0.095 Sum_probs=202.2
Q ss_pred CCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCc
Q 013210 83 ELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR 161 (447)
Q Consensus 83 ~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~ 161 (447)
.++|++..|. +......++++++.+++++|++. ++||+|||+|+++++.. +.+||+|+++.+.|++.... .....
T Consensus 20 ~~~~~~~~h~-~~~~~~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~--~~~~~ 95 (379)
T 3ke3_A 20 VYTDRALNHM-SKAFQEVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWT--QILEK 95 (379)
T ss_dssp SCCTTSCCTT-SHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHHHH--HHHHH
T ss_pred hccCCCCCCC-CHHHHHHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHHHH--HHHHH
Confidence 3667765454 44445778899999999999865 78889999999998854 57899999999999875321 11111
Q ss_pred ccC--eeEEEeC--------------CCCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEe
Q 013210 162 ACN--ITTTFVD--------------ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 162 ~~g--~~~~~v~--------------~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD 222 (447)
.| .++.+++ ..|+++++++++++++++|++.+++|++|.+.| +++|.++|++||+++|+|
T Consensus 96 -~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D 174 (379)
T 3ke3_A 96 -GKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVID 174 (379)
T ss_dssp -HCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -hCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 23 3555543 248999999994457999999999999999999 999999999999999999
Q ss_pred CCCC-CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh-h-----------------hhhcCCC
Q 013210 223 NTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-A-----------------LMLLGPT 283 (447)
Q Consensus 223 ~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~-~-----------------~~~~g~~ 283 (447)
++++ ...++...+++|+++.|+||+++++.. + |+++.++++++.+...... . ......+
T Consensus 175 ~~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~g-~-g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t 252 (379)
T 3ke3_A 175 CIASGCVWLDMKELGIDVLISAPQKGWSSTPC-A-GLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHAT 252 (379)
T ss_dssp CTTCTTCCCCHHHHTCSEEEECTTTTTCSCCC-E-EEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSC
T ss_pred ecccCCccccccccCCCEEEecchhhcCCCCc-e-EEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCC
Confidence 9995 333444456899999999999876543 4 9999999988777531100 0 0001112
Q ss_pred ccHH--HHH-HHHccCC--cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 284 MNPK--VAF-ELSERIP--HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 284 ~~~~--~a~-~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
++.. .+. .++..+. .+....+++.++++++.+.|+++++++..+.... .+.+..+.+++
T Consensus 253 ~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~----------------~~~i~~~~~~~ 316 (379)
T 3ke3_A 253 MPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFE----------------APGVVVSYTER 316 (379)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCB----------------CSSEEEEECSC
T ss_pred CCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCcccc----------------CceEEEEccCC
Confidence 2222 121 2222221 2456667788999999999999877654432111 22355566655
Q ss_pred HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 359 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 359 ~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+ . .+...|.. .| +.++.|..+ .+.. ....+.+|||+. ..+++++|+.+.++|++
T Consensus 317 ~~-~-~~~~~L~~---~G-i~v~~g~~~------~~~~------------~~~~~~lRis~~-~~~t~~di~~~~~~l~~ 371 (379)
T 3ke3_A 317 DD-M-HKGSAFAE---AG-LQIAAGVPL------KVGE------------PDNFKTFRLGLF-GLDKLTDIDGTVERFEK 371 (379)
T ss_dssp HH-H-HSSHHHHH---TT-CCCEECCCC------SSCC------------CTTCCEEEEECC-SHHHHTCHHHHHHHHHH
T ss_pred cc-h-HHHHHHHH---CC-eEEeCCccc------cccc------------cCcCCEEEEeCC-cCCCHHHHHHHHHHHHH
Confidence 43 2 22445554 23 466666321 1110 012578999998 65555555555555544
Q ss_pred h
Q 013210 439 M 439 (447)
Q Consensus 439 ~ 439 (447)
+
T Consensus 372 ~ 372 (379)
T 3ke3_A 372 A 372 (379)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-26 Score=222.15 Aligned_cols=331 Identities=15% Similarity=0.162 Sum_probs=217.7
Q ss_pred ccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh---cCCCCe
Q 013210 65 SATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL---CSSGGH 140 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l---~~~gd~ 140 (447)
+.+++.+.+ +.+.+.+...+.+ ..+...++++.+|+++|.+.+++|+||++|+.++++++ +++||+
T Consensus 7 ~~~~~~~~v~~a~~~~~~~~~~~----------~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~ 76 (375)
T 2fnu_A 7 SEPCLDKEDKKAVLEVLNSKQLT----------QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNE 76 (375)
T ss_dssp CCCCCCHHHHHHHHHHHTSSCCS----------SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCE
T ss_pred CCCCCCHHHHHHHHHHHHcCccc----------CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCE
Confidence 344444444 6666666432211 14567899999999999999999999999999999998 889999
Q ss_pred EEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc
Q 013210 141 VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 215 (447)
Q Consensus 141 Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~ 215 (447)
|+++.++|+++...+. ..|.++.+++.+ |+++|++++ ++++++|+++++ +|.+.|+++|.++|+++
T Consensus 77 Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~ 147 (375)
T 2fnu_A 77 IITTPISFVATANMLL-----ESGYTPVFAGIKNDGNIDELALEKLI-NERTKAIVSVDY---AGKSVEVESVQKLCKKH 147 (375)
T ss_dssp EEECSSSCTHHHHHHH-----HTTCEEEECCBCTTSSBCGGGSGGGC-CTTEEEEEEECG---GGCCCCHHHHHHHHHHH
T ss_pred EEECCCccHhHHHHHH-----HCCCEEEEeccCCCCCCCHHHHHhhc-CcCceEEEEeCC---cCCccCHHHHHHHHHHc
Confidence 9999999999988773 268888888764 788999988 678999887766 99999999999999999
Q ss_pred CCEEEEeCCCCCCCC-CccCCC--CeEEEeCCC--ccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhh----------hh
Q 013210 216 GVTVVVDNTFSPLVL-SPARLG--ADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMDLHQGAL----------ML 279 (447)
Q Consensus 216 gi~livD~~~~~~~~-~~~~~g--~di~~~S~s--K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~----------~~ 279 (447)
|+++|+|++|+.... ....++ .|+++.|+| |++++ | +||+++.+ +++++.+........ ..
T Consensus 148 ~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2fnu_A 148 SLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKS 224 (375)
T ss_dssp TCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESS
T ss_pred CCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCcccccccccccc
Confidence 999999999943221 111121 267777777 99986 6 54555544 778888776543211 00
Q ss_pred cC--CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013210 280 LG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 356 (447)
Q Consensus 280 ~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l 356 (447)
.+ ..+.+..+......++.+....++..++++++.+.|++++ .++..+.... .+.+.++++.+
T Consensus 225 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 290 (375)
T 2fnu_A 225 IGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKD--------------KSSNHLYPILM 290 (375)
T ss_dssp CCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSS--------------CCCCSCEEEEE
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCC--------------CcceEEEEEEe
Confidence 11 1344444444443456677788888999999999998874 3443321000 01234667777
Q ss_pred CCH-H-HHHHHHHHhhcccccccccccccCccccccccccc---cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 357 ETE-E-KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS---TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 357 ~~~-~-~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~---~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
+.. . ....+.+.|... | +.++.+.. .....++.. .....+.... ...+.||||++ ...+++.++.
T Consensus 291 ~~~~~~~~~~l~~~L~~~---g-i~v~~~~~-p~~~~~~~~~~~~~~~~~~~~~----~~~~~lRi~~~-~~~t~~~i~~ 360 (375)
T 2fnu_A 291 HQKFFTCKKLILESLHKR---G-ILAQVHYK-PIYQYQLYQQLFNTAPLKSAED----FYHAEISLPCH-ANLNLESVQN 360 (375)
T ss_dssp CGGGGGGHHHHHHHHHHT---T-EECBCCCC-CGGGSHHHHHHHCCCCCHHHHH----HHHHEEEECCC-TTCCHHHHHH
T ss_pred CccccchHHHHHHHHHHC---C-CCcccccc-ccccchhhhcCCCccCChHHHH----HHhCEEEecCC-CCCCHHHHHH
Confidence 632 1 356777777653 3 44442210 000000000 0000110000 11367999999 8888888888
Q ss_pred HHHHHHHhhh
Q 013210 432 FEKALSRMQD 441 (447)
Q Consensus 432 l~~al~~~~~ 441 (447)
+.++|+++.+
T Consensus 361 ~~~~l~~~~~ 370 (375)
T 2fnu_A 361 IAHSVLKTFE 370 (375)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877643
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-26 Score=227.60 Aligned_cols=286 Identities=12% Similarity=0.086 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHH--HHHHHHhcCC------------CCeEEEeCCCchhHHHHHHhhcCcccC
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAI--SSVLMQLCSS------------GGHVVAARTLYGGTHALLTHFFPRACN 164 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~--~~al~~l~~~------------gd~Vi~~~~~y~~~~~~~~~~~~~~~g 164 (447)
..++++.+|++++.+ .+++|+|+++++ .+++..+..+ +|+|+++.|+|+++...+. ..|
T Consensus 78 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~-----~~g 152 (422)
T 3d6k_A 78 IADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITE-----HFG 152 (422)
T ss_dssp CHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-----HHT
T ss_pred CHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHH-----HcC
Confidence 478999999999864 599999999997 5666777655 3479999999999987773 257
Q ss_pred eeEEEeCCC----CHHHHHHhhccCCceEEE-EEcCCCCCccccCHH---HHHHHHH-hcCCEEEEeCCCCC--CCCC--
Q 013210 165 ITTTFVDIS----DHEMVNSAIVQGRTKVLY-FESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFSP--LVLS-- 231 (447)
Q Consensus 165 ~~~~~v~~~----d~~~l~~~i~~~~t~lV~-i~~~~NptG~v~~l~---~I~~la~-~~gi~livD~~~~~--~~~~-- 231 (447)
.++..++.+ |+++|+++++..++++|+ +++|+||||.+++.+ +|+++|+ +||+++|+|++|.. +...
T Consensus 153 ~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~ 232 (422)
T 3d6k_A 153 FEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFP 232 (422)
T ss_dssp CEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCC
T ss_pred CEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCC
Confidence 777776653 899999999334789988 689999999999876 7777787 89999999999953 4321
Q ss_pred ---cc--------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC----
Q 013210 232 ---PA--------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---- 296 (447)
Q Consensus 232 ---~~--------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---- 296 (447)
+. ..+.++++.|+||+ +++|.|+ ||+++++++++.+....... ....+.+.+.++..++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~Glri-G~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~ 309 (422)
T 3d6k_A 233 IVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGV-SFFASSKENIEWYASHANVR-GIGPNKLNQLAHAQFFGDVAGLK 309 (422)
T ss_dssp CCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSC-EEEECCHHHHHHHHHHHHHH-CSCCCHHHHHHHHHHHCSHHHHH
T ss_pred CCcChhhHhhccCCCCcEEEEcChhhh-cCcccce-EEEEeCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHhCcchHH
Confidence 11 23678999999999 6689998 99999999998887765521 1223334444444444431
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHh----CCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 297 PHLGLRMKEHCHRALIFARRMKK----LGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~----~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
+++....+.+.++++.+.+.|++ .+. .+..|. .|.++++.++.. ....+...|..
T Consensus 310 ~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~l~~ 369 (422)
T 3d6k_A 310 AHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPT-------------------GGYFISVDVVPG-TASRVVELAKE 369 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCS-------------------BSSCEEEEESTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCC-------------------cceEEEEECCCC-CHHHHHHHHHH
Confidence 22334445567777777777765 232 333332 466899999743 23455566654
Q ss_pred ccccccccccccC-ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 372 YAQFGFMAVSLGY-YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 372 ~~~~g~~~vs~G~-~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.| +.+..|+ .+.. . . ...++.+|||++ . .+++.++.+.++|++
T Consensus 370 ---~g-V~v~~~g~~f~~----~-~-------------~~~~~~iRis~~-~-~~~e~i~~~~~~l~~ 413 (422)
T 3d6k_A 370 ---AG-IALTGAGSSFPL----H-N-------------DPNNENIRLAPS-L-PPVAELEVAMDGFAT 413 (422)
T ss_dssp ---TT-EECCCTTTTSGG----G-C-------------CTTSCEEEECCS-S-SCHHHHHHHHHHHHH
T ss_pred ---CC-eEEEcCccccCC----C-C-------------CCCCCeEEEecC-C-CCHHHHHHHHHHHHH
Confidence 23 4555431 1100 0 0 012478999999 6 444444444444443
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=229.42 Aligned_cols=277 Identities=12% Similarity=0.117 Sum_probs=181.7
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHH--hC---CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCc
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL--EG---TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLY 148 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l--~g---~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y 148 (447)
+.+.+.++.. .++...+.|+. .....++++.+|++ .| .+.+++|+|+++++.+++ .++.+||+|+++.|+|
T Consensus 53 ~a~~~~~~~~-~~~~~~~~y~~--~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~-~~~~~gd~Vl~~~p~y 128 (400)
T 3asa_A 53 EAFASSIARL-SSPTTCRGYGP--DFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLL-SFFGPNQTVAIQDPSY 128 (400)
T ss_dssp HHHHHHHHHH-TSSSCCCCCCC--TTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHH-HHHCSSCEEEEEESCC
T ss_pred HHHHHHHhcc-cccccccCCCC--CCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHH-HHcCCCCEEEECCCCc
Confidence 5555544322 22222344543 23346899999999 46 356999999999999865 4568899999999999
Q ss_pred hhHHHHHHhhcCcccCee-EEEeCCCCHHHHHHhhcc-CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeC
Q 013210 149 GGTHALLTHFFPRACNIT-TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDN 223 (447)
Q Consensus 149 ~~~~~~~~~~~~~~~g~~-~~~v~~~d~~~l~~~i~~-~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~ 223 (447)
+++...+. ..|.+ +..++.++...+...+++ +++++|++++|+||||.++| +++|+++|+++|+++|+|+
T Consensus 129 ~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 203 (400)
T 3asa_A 129 PAYLDIAR-----LTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDA 203 (400)
T ss_dssp HHHHHHHH-----HTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHH-----HcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 99887663 25666 777765421111111211 57899999999999999997 5678899999999999999
Q ss_pred CCCCCCC------CccCC----CCeEEEeCCCccccCCCCeeEEEEEcChHH-------HHHHHHHhhhhhhhcCCCccH
Q 013210 224 TFSPLVL------SPARL----GADVVVHSISKFISGGADIIAGAVCGPANL-------VNSMMDLHQGALMLLGPTMNP 286 (447)
Q Consensus 224 ~~~~~~~------~~~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~-------~~~l~~~~~~~~~~~g~~~~~ 286 (447)
+|..+.. ....+ +.++++.|+||++|++|.|+ ||+++++++ ++.+............+.+.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Glri-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (400)
T 3asa_A 204 AYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRL-GWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQ 282 (400)
T ss_dssp TTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCC-EEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHH
T ss_pred hhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchhe-eEEeeChhhccchhhhHHHHHHHHhccCccCCChHHH
Confidence 9965432 22222 25699999999999999998 999998887 665543222111112333334
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-eCCHHHHHHH
Q 013210 287 KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-METEEKANRL 365 (447)
Q Consensus 287 ~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~-l~~~~~~~~l 365 (447)
.++..++... ++....+++.++++++.+.|++.+.++..|. .|.++++. ++...+...+
T Consensus 283 ~a~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 342 (400)
T 3asa_A 283 EAGVAGLSIL-PQLEAIHYYRENSDLLRKALLATGFEVFGGE-------------------HAPYLWVKPTQANISDRDL 342 (400)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHTTCEEEECS-------------------SSSEEEEECCCTTCCTTTH
T ss_pred HHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC-------------------CceEEEEeccCCCCCHHHH
Confidence 4443344332 4455667788999999999998876655332 35588998 7632122345
Q ss_pred HHHhhccccccccccccc
Q 013210 366 MNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 366 ~~~l~~~~~~g~~~vs~G 383 (447)
...|... .| +.+..|
T Consensus 343 ~~~l~~~--~g-v~v~~g 357 (400)
T 3asa_A 343 FDFFLRE--YH-IAITPG 357 (400)
T ss_dssp HHHHHHH--HS-EECEEG
T ss_pred HHHHHHh--CC-EEEeCh
Confidence 5554321 23 455555
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=223.01 Aligned_cols=242 Identities=11% Similarity=0.046 Sum_probs=170.0
Q ss_pred cccccCCH-HHHHH-hhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhC--------CC--eEEEeCChHHHHHHHH--
Q 013210 66 ATFTVMEP-ETMRR-MFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--------TE--AAYCTASGMSAISSVL-- 131 (447)
Q Consensus 66 tt~~~~~~-~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g--------~~--~~~~tsggt~A~~~al-- 131 (447)
+++..+.+ +.+.+ .+... ..+.|+. .....++++.++++++ .+ .+++|+||++|+++++
T Consensus 42 ~~~~~~~v~~a~~~~~~~~~-----~~~~y~~--~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~ 114 (397)
T 3fsl_A 42 IIPQLQAVAEAEARLNAQPH-----GASLYLP--MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADF 114 (397)
T ss_dssp CCCCCHHHHHHHHHHHHSCC-----CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHH
T ss_pred CccCcHHHHHHHHhhccCcc-----ccccCCC--CCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHH
Confidence 34444455 55655 55421 1233442 1223578888888873 35 7899999999999995
Q ss_pred HHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC----C---CHHHHHHhhcc--CCceEEEEEcCCCCCccc
Q 013210 132 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ--GRTKVLYFESISNPTLAV 202 (447)
Q Consensus 132 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~----~---d~~~l~~~i~~--~~t~lV~i~~~~NptG~v 202 (447)
.+++++||+|+++.|.|+++...+. ..|.++..++. + |+++|++++++ +++++|++++|+||||.+
T Consensus 115 ~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~ 189 (397)
T 3fsl_A 115 LKRYFPESGVWVSDPTWENHVAIFA-----GAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGAD 189 (397)
T ss_dssp HHHHCTTCCEEEESSCCHHHHHHHH-----HTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCC
T ss_pred HHhcCCCCeEEEeCCCchhHHHHHH-----HcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcC
Confidence 4567899999999999999987763 26778888876 3 89999999932 678999999999999999
Q ss_pred cC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----------cCCCCeEEEeCCCccccCCCCeeEEEEEc---ChHH
Q 013210 203 AN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAVCG---PANL 265 (447)
Q Consensus 203 ~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~ 265 (447)
.+ +++|+++|++||+++|+|++|+.+.+.. ...+.++++.|+||.+|++|.|+ ||++. +++.
T Consensus 190 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ri-G~~~~~~~~~~~ 268 (397)
T 3fsl_A 190 LTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERV-GGLSVMCEDAEA 268 (397)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCC-EEEEEECSSHHH
T ss_pred CCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCe-eEEEEecCCHHH
Confidence 76 5589999999999999999997665531 12357899999999999999999 88753 4566
Q ss_pred HHHHHHH-hhh--hhhhcCCCccHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 266 VNSMMDL-HQG--ALMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 266 ~~~l~~~-~~~--~~~~~g~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
++.+... ... ......+...+.++...+.. .+++....+++.++++++.+.|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 333 (397)
T 3fsl_A 269 AGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTE 333 (397)
T ss_dssp HHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5544322 110 11112233333333333332 2335566677889999999999876
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-26 Score=226.23 Aligned_cols=242 Identities=13% Similarity=0.045 Sum_probs=169.1
Q ss_pred cccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhC--------CC--eEEEeCChHHHHHHHH--H
Q 013210 66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--------TE--AAYCTASGMSAISSVL--M 132 (447)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g--------~~--~~~~tsggt~A~~~al--~ 132 (447)
.++..+.+ +.+.+.+... ..+.|+. .....++++.++++++ .+ .+++|+||++|+.+++ .
T Consensus 65 ~~~~~~~v~~a~~~~~~~~-----~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~ 137 (420)
T 4f4e_A 65 KIPLLRAVRDAEKARVEAG-----LPRGYLP--IDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFL 137 (420)
T ss_dssp CCCCCHHHHHHHHHHHHTC-----CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHH
T ss_pred CccCcHHHHHHHHHHhccC-----CCCCCCC--CCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHH
Confidence 44444455 5565555431 1234442 2223567888887762 34 7899999999999994 4
Q ss_pred HhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC----C---CHHHHHHhhcc--CCceEEEEEcCCCCCcccc
Q 013210 133 QLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ--GRTKVLYFESISNPTLAVA 203 (447)
Q Consensus 133 ~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~----~---d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~ 203 (447)
+++.+||+|+++.|.|+++...+. ..|.++..++. + |+++|++++++ +++++|++++|+||||.+.
T Consensus 138 ~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~ 212 (420)
T 4f4e_A 138 RTLNPKAKVAISDPSWENHRALFD-----MAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDL 212 (420)
T ss_dssp HHHCTTCCEEEEESCCHHHHHHHH-----HTTCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC
T ss_pred HHhCCCCEEEEeCCCcHhHHHHHH-----HcCCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC
Confidence 668899999999999999987773 25777777766 2 89999999932 6789999999999999997
Q ss_pred C---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----------cCCCCeEEEeCCCccccCCCCeeEEEEEc---ChHHH
Q 013210 204 N---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAVCG---PANLV 266 (447)
Q Consensus 204 ~---l~~I~~la~~~gi~livD~~~~~~~~~~-----------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~~ 266 (447)
+ +++|+++|++||+++|+|++|..+.++. ...+.++++.|+||.+|++|.|+ ||++. +++++
T Consensus 213 ~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~~~~~~~~~ 291 (420)
T 4f4e_A 213 NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERV-GALSIITDSKDEA 291 (420)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCE-EEEEEECSSHHHH
T ss_pred CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCc-EEEEEEcCCHHHH
Confidence 6 6688999999999999999997766541 12367899999999999999999 87642 45655
Q ss_pred HHHHH-Hhhh--hhhhcCCCccHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 267 NSMMD-LHQG--ALMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 267 ~~l~~-~~~~--~~~~~g~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
+.+.. .... ......+...+.++...+.. .+++....+++.++++.+.+.|+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 355 (420)
T 4f4e_A 292 ARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA 355 (420)
T ss_dssp HHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54322 1110 11112233333333333332 1234556677899999999999886
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=225.20 Aligned_cols=279 Identities=13% Similarity=0.125 Sum_probs=183.0
Q ss_pred HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHh----CC--CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCC
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----GT--EAAYCTASGMSAISSVLMQLCSSGGHVVAARTL 147 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~----g~--~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~ 147 (447)
+++.+.... +++..+.+.|+. .....++++.+|+++ +. +.++||+|+++++.+ +..++++||+|+++.|.
T Consensus 76 ~a~~~~~~~-~~~~~~~~~y~~--~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~ 151 (432)
T 3ei9_A 76 SAMAKKAHE-LSTIEGYSGYGA--EQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPS 151 (432)
T ss_dssp HHHHHHHHH-TTSTTTCCCCCC--TTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESC
T ss_pred HHHHHHHhc-ccccCCccCCCC--CCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH-HHHHcCCCCEEEEeCCC
Confidence 555555442 233233344542 233468999999986 43 569999999999987 57788999999999999
Q ss_pred chhHHHHHHhhcCcccC---------eeEEEeCCCCHHHHHHhhc-cCCceEEEEEcCCCCCccccC---HHHHHHHHHh
Q 013210 148 YGGTHALLTHFFPRACN---------ITTTFVDISDHEMVNSAIV-QGRTKVLYFESISNPTLAVAN---IPELSRLAHD 214 (447)
Q Consensus 148 y~~~~~~~~~~~~~~~g---------~~~~~v~~~d~~~l~~~i~-~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~ 214 (447)
|+++...+..... .+ .++.+++.++.+.+...++ .+++++|++++|+||||.+.+ +++|+++|++
T Consensus 152 y~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~ 229 (432)
T 3ei9_A 152 YPAYVDSSVIMGQ--TGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKK 229 (432)
T ss_dssp CTHHHHHHHHHTC--SCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCC--cccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999887743321 12 2455555442211111121 357899999999999999986 6677778999
Q ss_pred cCCEEEEeCCCCCCCCC-----ccC----CCCeEEEeCCCccccCCCCeeEEEEEcChHH--------HHHHHHHhhhhh
Q 013210 215 KGVTVVVDNTFSPLVLS-----PAR----LGADVVVHSISKFISGGADIIAGAVCGPANL--------VNSMMDLHQGAL 277 (447)
Q Consensus 215 ~gi~livD~~~~~~~~~-----~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~--------~~~l~~~~~~~~ 277 (447)
||+++|+|++|+.+.+. ... .+.++++.|+||.+|++|.|+ ||+++++++ ++.+.......
T Consensus 230 ~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (432)
T 3ei9_A 230 NGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRL-GWTVIPKKLLYSDGFPVAKDFNRIICTC- 307 (432)
T ss_dssp HTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCC-EEEECCTTCBCTTSCBHHHHHHHHHHHS-
T ss_pred cCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccce-EEEEEChHHhhcchHHHHHHHHHHhccc-
Confidence 99999999999655332 111 256899999999999999999 999988877 66666554311
Q ss_pred hhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
....+.+.+.++..++. ..+++.+..+++.++++++.+.|+++++.+..|. .|.++++.
T Consensus 308 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~ 368 (432)
T 3ei9_A 308 FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGK-------------------NAPYVWVH 368 (432)
T ss_dssp CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECS-------------------SSSEEEEE
T ss_pred cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecCCC-------------------cceEEEEE
Confidence 11122222333333322 1234566777889999999999998876655332 35589999
Q ss_pred eCCHHHHHHHHHHhhccccccccccccc
Q 013210 356 METEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 356 l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
+++.. ...+...|... .| +.+..|
T Consensus 369 ~~~~~-~~~~~~~ll~~--~g-v~v~~g 392 (432)
T 3ei9_A 369 FPNQS-SWDVFAEILEK--TH-VVTTPG 392 (432)
T ss_dssp CTTSC-HHHHHHHHHHH--HC-EECEEG
T ss_pred CCCCC-HHHHHHHHHHH--CC-EEEeCc
Confidence 97322 34455554321 23 455555
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-27 Score=229.71 Aligned_cols=312 Identities=13% Similarity=0.071 Sum_probs=200.5
Q ss_pred ccccccCCH-HHHHHhhcCCCCCCCCC---ccccCCCCchHHHHHHHHHHHhCCC---eE-EEeCChHHHHHHHHHHhcC
Q 013210 65 SATFTVMEP-ETMRRMFAGELGPDRDF---FIYSRHFNPTVLNLSRQMAALEGTE---AA-YCTASGMSAISSVLMQLCS 136 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~l~~~ia~l~g~~---~~-~~tsggt~A~~~al~~l~~ 136 (447)
+++++.+.+ +++.+.+....+++++. ..++.......+++++.+++++|++ ++ ++|+||++|+++++.++++
T Consensus 11 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~ 90 (362)
T 2c0r_A 11 GPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLK 90 (362)
T ss_dssp SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCC
Confidence 334444444 66666554432322331 1122222345789999999999985 54 6789999999999999999
Q ss_pred CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---------CHHHHHHhhccCCceEEEEEcCCCCCccc-cCHH
Q 013210 137 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIP 206 (447)
Q Consensus 137 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---------d~~~l~~~i~~~~t~lV~i~~~~NptG~v-~~l~ 206 (447)
+||+|++..+.|.+... . ..... .| ++++++.+ |.++++ + +++|++|++++++||||.+ .|++
T Consensus 91 ~gd~vl~~~~~~~~~~~-~-~~~~~-~g-~~~~v~~~~~~~~~~~~~~~~~~--i-~~~t~~v~~~~~~n~tG~~~~~l~ 163 (362)
T 2c0r_A 91 EGQTANYVMTGSWASKA-L-KEAKL-IG-DTHVAASSEASNYMTLPKLQEIQ--L-QDNAAYLHLTSNETIEGAQFKAFP 163 (362)
T ss_dssp TTCEEEEEECSHHHHHH-H-HHHHH-HS-CEEEEEECGGGTTCSCCCGGGCC--C-CTTEEEEEEESEETTTTEECSSCC
T ss_pred CCCeEEEEecCcHhHHH-H-HHHHH-hC-CeEEEecccccccccCCCHHHcc--c-CCCcCEEEEeCCcCccceeccccc
Confidence 99999988776544321 1 11122 57 76666532 333332 5 6789999999999999995 7888
Q ss_pred HHHHHHHhcCCEEEEeCCCCCC--CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh---------h
Q 013210 207 ELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ---------G 275 (447)
Q Consensus 207 ~I~~la~~~gi~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~---------~ 275 (447)
+| +|+++|+|++|... ..+..+ .|+++.|+||++|++| + |++++++++++.+..... .
T Consensus 164 ~i------~~~~vivD~a~~~~~~~~~~~~--~d~~~~s~~K~~g~~G--~-G~l~~~~~~~~~l~~~~~~~~~~~~~~~ 232 (362)
T 2c0r_A 164 DT------GSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNLGPSG--V-TVVIVREDLVAESPKHLPTMLRYDTYVK 232 (362)
T ss_dssp CC------TTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTCCSS--C-EEEEEEGGGSSSCCTTSCGGGCHHHHHH
T ss_pred cc------CCCEEEEEChhhccCCccchhH--CcEEEEeccccccCcC--c-EEEEEcHHHHhhccccCchHHhHHHHhh
Confidence 76 89999999999433 223222 4899999999999887 5 999988887655432100 0
Q ss_pred hhhhcCCCc--cHHHHHHHHccCC---cHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhccCCCc
Q 013210 276 ALMLLGPTM--NPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANKEYGF 348 (447)
Q Consensus 276 ~~~~~g~~~--~~~~a~~~~~~~~---~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~~~g~ 348 (447)
.....++.. .+.++..++..+. .+..+.+++.++++++.+.|++++ . .+..+. .. ..
T Consensus 233 ~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~~--------------~~ 296 (362)
T 2c0r_A 233 NNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDV--DS--------------RS 296 (362)
T ss_dssp TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCG--GG--------------BC
T ss_pred ccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCh--HH--------------cC
Confidence 001122222 1222223333221 356677888999999999999887 4 543221 00 13
Q ss_pred CcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013210 349 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428 (447)
Q Consensus 349 g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 428 (447)
+++++|.+++......+.+.|... | +.+..|.. ..+.||||++ ..++++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~L~~~---g-i~~~~g~~-------------------------~~~~iRis~~-~~~~~e~ 346 (362)
T 2c0r_A 297 DMNITFRLASEELEKEFVKASEQE---G-FVGLKGHR-------------------------SVGGLRASIY-NAVPYES 346 (362)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT---T-EESCBCCT-------------------------TTCSEEEECC-TTSCHHH
T ss_pred CcEEEEEcCCcchHHHHHHHHHHC---C-CeeccCCC-------------------------CCCEEEEECC-CCCCHHH
Confidence 458899987654567888888753 3 34333310 0256999999 8888888
Q ss_pred HHHHHHHHHHhh
Q 013210 429 WSQFEKALSRMQ 440 (447)
Q Consensus 429 i~~l~~al~~~~ 440 (447)
++.+.++|+++.
T Consensus 347 i~~l~~~l~~~~ 358 (362)
T 2c0r_A 347 CEALVQFMEHFK 358 (362)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888764
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=219.59 Aligned_cols=288 Identities=12% Similarity=0.130 Sum_probs=193.4
Q ss_pred hHHHHHHHHHHHhCC------CeEEEeCChHHHHHHHHHHhc---CCCCeEEEeC-CCchhHH-HHHHhhcCcccCeeEE
Q 013210 100 TVLNLSRQMAALEGT------EAAYCTASGMSAISSVLMQLC---SSGGHVVAAR-TLYGGTH-ALLTHFFPRACNITTT 168 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~------~~~~~tsggt~A~~~al~~l~---~~gd~Vi~~~-~~y~~~~-~~~~~~~~~~~g~~~~ 168 (447)
...++++.++++++. +.+++|+||++|+.++++++. ++||+|++.. +.|+... ..+ .. .|.+++
T Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~----~~-~g~~~~ 113 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCL----RS-YGAQVD 113 (385)
T ss_dssp HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHH----HH-TTCEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHH----HH-cCCceE
Confidence 356788888888875 469999999999999999987 8899998884 4555543 232 22 688888
Q ss_pred EeCC-C-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc--CCEEEEeCCCC--CCCCCccCCCCe
Q 013210 169 FVDI-S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFS--PLVLSPARLGAD 238 (447)
Q Consensus 169 ~v~~-~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~--~~~~~~~~~g~d 238 (447)
.++. + |+++|++++++.++++|++++++||||.+.|+++|.++|+++ |+++|+|++|+ ...++...+++|
T Consensus 114 ~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d 193 (385)
T 2bkw_A 114 VVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVD 193 (385)
T ss_dssp EECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCS
T ss_pred EEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCce
Confidence 8887 3 899999999333799999999999999999999999999999 99999999993 233344456889
Q ss_pred EEEeCCCcccc-CCCCeeEEEEEcChHHHH-HHH------------------H----HhhhhhhhcCCC-ccHHHH-HHH
Q 013210 239 VVVHSISKFIS-GGADIIAGAVCGPANLVN-SMM------------------D----LHQGALMLLGPT-MNPKVA-FEL 292 (447)
Q Consensus 239 i~~~S~sK~~g-~~g~~igG~l~~~~~~~~-~l~------------------~----~~~~~~~~~g~~-~~~~~a-~~~ 292 (447)
+++.|+||+++ ++| + |+++.++++++ .+. . +..+.....++. .....+ ..+
T Consensus 194 ~~~~s~~K~~~~~~G--~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 270 (385)
T 2bkw_A 194 FALTASQKAIGAPAG--L-SISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVA 270 (385)
T ss_dssp EEEEESSSTTCCCSC--E-EEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHH
T ss_pred EEEecCccccccCCc--c-eEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHH
Confidence 99999999665 455 4 88888888766 442 1 111000001122 112212 222
Q ss_pred HccCC--cHHHHHHHHHHHHHHHHHHH-HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013210 293 SERIP--HLGLRMKEHCHRALIFARRM-KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL 369 (447)
Q Consensus 293 ~~~~~--~l~~~~~~~~~~~~~l~~~L-~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l 369 (447)
+..+. .+....+++.++++++.+.| ++.+.++..|. +.. +..+.+++|.+++ ...+.+.|
T Consensus 271 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~-------------~~~~~~~~~~~~~---~~~~~~~l 333 (385)
T 2bkw_A 271 LKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRY-PSN-------------MSAHGLTAVYVAD---PPDVIAFL 333 (385)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCS-SST-------------TBCSSCEEEECSC---HHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccC-ccc-------------ccCCceEEEecCC---HHHHHHHH
Confidence 22221 24556777889999999999 87765554321 000 0135689999876 45677777
Q ss_pred hcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCC---CCHHHHHHHHHHHHHHh
Q 013210 370 QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYL---GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 370 ~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~---~~~~~~i~~l~~al~~~ 439 (447)
... | +.++.|... ...++.+||| +| . ..+++.++.+.++|+++
T Consensus 334 ~~~---g-i~v~~g~~~----------------------~~~~~~iRis~~~-~~~~~~~~e~i~~~~~~l~~~ 380 (385)
T 2bkw_A 334 KSH---G-VVIAGGIHK----------------------DIGPKYIRIGHMG-VTACNKNLPYMKNCFDLIKLA 380 (385)
T ss_dssp HHT---T-EECBCCCCT----------------------TTGGGEEEECCCG-GGTSSTTCTHHHHHHHHHHHH
T ss_pred HHC---C-eEEeCCCCc----------------------ccCCCEEEEEccc-cccccCCHHHHHHHHHHHHHH
Confidence 642 3 455544210 0124789999 76 3 23555556665555544
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-26 Score=222.72 Aligned_cols=279 Identities=15% Similarity=0.201 Sum_probs=195.2
Q ss_pred CchHHHHHHHHHHHhCC-CeEEEeCChHHHHHHHHHH---hc---CCC-CeEEEeCCCchhHHHHHHhhcCcc---cCe-
Q 013210 98 NPTVLNLSRQMAALEGT-EAAYCTASGMSAISSVLMQ---LC---SSG-GHVVAARTLYGGTHALLTHFFPRA---CNI- 165 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~-~~~~~tsggt~A~~~al~~---l~---~~g-d~Vi~~~~~y~~~~~~~~~~~~~~---~g~- 165 (447)
.+...++++.+++++|. +.+++|+||++|+.++++. +. ++| |+|++++++|+++...+....... .|.
T Consensus 69 ~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~ 148 (375)
T 2eh6_A 69 NPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFE 148 (375)
T ss_dssp CHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTC
T ss_pred CHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCC
Confidence 45678999999999998 8899999999999999875 34 678 999999999988765442221110 122
Q ss_pred ----eEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----
Q 013210 166 ----TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP----- 232 (447)
Q Consensus 166 ----~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~----- 232 (447)
.+..++..|+++|++++ ++++++|++++++||||.+.+ +++|.++|++||+++|+|++|+++....
T Consensus 149 ~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~ 227 (375)
T 2eh6_A 149 PLVPGFSYAKLNDIDSVYKLL-DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAY 227 (375)
T ss_dssp SCCSSEEEECTTCHHHHHTTC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGG
T ss_pred CCCCCceeCCCchHHHHHHHh-cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhh
Confidence 26667777999999999 678999999999999999988 9999999999999999999997553221
Q ss_pred cCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHH
Q 013210 233 ARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRA 310 (447)
Q Consensus 233 ~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~ 310 (447)
..++ .|++ |+||.+++ |.++ |+++.++++++.+.....+. ..+. ++.....+...++.+....+++.+++
T Consensus 228 ~~~~~~~d~~--s~SK~~~~-g~~~-G~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 299 (375)
T 2eh6_A 228 QHFNLKPDVI--ALAKGLGG-GVPI-GAILAREEVAQSFTPGSHGS--TFGG--NPLACRAGTVVVDEVEKLLPHVREVG 299 (375)
T ss_dssp GGGTCCCSEE--EECGGGGT-TSCC-EEEEEEHHHHTTCCTTSCCC--SSTT--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCEE--EEcccccC-CCCe-EEEEEcHHHHhhhcCCCCCC--CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2335 7777 56699994 7888 88888888776664421111 1222 22222222222233335667788889
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
+++.+.|++.+.... + +.|.++++.++.. ...+.+.|... | +.+..+
T Consensus 300 ~~l~~~L~~~~~~~~-~-------------------~~g~~~~~~~~~~--~~~~~~~l~~~---g-i~~~~~------- 346 (375)
T 2eh6_A 300 NYFKEKLKELGKGKV-K-------------------GRGLMLGLELERE--CKDYVLKALEK---G-LLINCT------- 346 (375)
T ss_dssp HHHHHHHHHTTSSEE-E-------------------EETTEEEEECSSC--CHHHHHHHHHT---T-EECEEE-------
T ss_pred HHHHHHHHHHhcCCc-e-------------------EEEEEEEEEEcCc--HHHHHHHHHHC---C-CEEecC-------
Confidence 999999988754111 1 2466999998741 34566666542 3 232211
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+|||++ ...+++.++.+.++|+++
T Consensus 347 --------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 347 --------------------AGKVLRFLPP-LIIQKEHIDRAISVLREI 374 (375)
T ss_dssp --------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred --------------------CCCEEEEECC-CCCCHHHHHHHHHHHHHh
Confidence 1478999999 777788888887777653
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=219.15 Aligned_cols=308 Identities=14% Similarity=0.146 Sum_probs=215.4
Q ss_pred CchHHHHHHHH-HHHhC-CCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 98 NPTVLNLSRQM-AALEG-TEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 98 ~~~~~~l~~~i-a~l~g-~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.+.+.++|+.+ |+++| .+.+++|+|||+|+++++.++ +++||+|+++.++|.++...+. ..|.++++++.+
T Consensus 35 ~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~v~~~~ 109 (377)
T 3ju7_A 35 GPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAI-----WCGLEPYFIDISI 109 (377)
T ss_dssp CHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCT
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEecCC
Confidence 47789999999 99999 888999999999999999998 8999999999999999887763 268899988764
Q ss_pred -----CHHHHHHhhccCC--ceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC---CeEEEe
Q 013210 174 -----DHEMVNSAIVQGR--TKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG---ADVVVH 242 (447)
Q Consensus 174 -----d~~~l~~~i~~~~--t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g---~di~~~ 242 (447)
|++++++++.+++ |++|+ ++||+|.+.|+++|.++|+ +|+++|+|++|+ +..+.....| .|+.++
T Consensus 110 ~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~ 185 (377)
T 3ju7_A 110 DDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIY 185 (377)
T ss_dssp TTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEE
T ss_pred ccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEE
Confidence 8999999884445 88887 6789999999999999999 999999999994 2223322232 566666
Q ss_pred C--CCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhh--------hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 243 S--ISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL--------MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 243 S--~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~--------~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
| .+|++++ |. ||+++. ++++.++++..+.... ...+..++...++..+..++++..+.++.+++++
T Consensus 186 S~~~~K~l~~-g~--gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~ 262 (377)
T 3ju7_A 186 SFHATKPFGI-GE--GGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISE 262 (377)
T ss_dssp ECBTTSSSCC-BS--CEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ECCCCCcCCC-CC--cEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 4799996 53 577765 6788888877665221 0112345666666666667788889999999999
Q ss_pred HHHHHHHhCCC-ee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccc
Q 013210 312 IFARRMKKLGL-KV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 312 ~l~~~L~~~~~-~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
++.+.|++++. .+ ..|....+. .-.++.+.+++....+.+++.|...+ |.++.+....+-
T Consensus 263 ~~~~~L~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~~g----I~~~~~~~~~~~ 324 (377)
T 3ju7_A 263 WYKQLLQSNGLMKKGWQLQKTEAV--------------IQQFMPILCPEEVRNKQVIEDLKKQK----IEARLYFSPSCH 324 (377)
T ss_dssp HHHHHHHHTTTTTTTCBCCCCSCB--------------CCSSEEEECCTTSCHHHHHHHHHTTT----BCCBCTTSSCGG
T ss_pred HHHHHhcCCCCccccccCCCCCcc--------------eEEEEEEEeCChhhHHHHHHHHHHCC----CceecccCCccc
Confidence 99999998753 11 111111111 11145666664323567888887643 666666421111
Q ss_pred cccccccC--CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 390 SCSGSSTS--SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 390 ~~~a~~~~--~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
..|...++ ..++..+.. ..+.|||+++ ...+++.++.+.++|.++-
T Consensus 325 ~~~~~~~~~~~~~p~~~~~----~~~~l~lp~~-~~~t~~di~~v~~~l~~~~ 372 (377)
T 3ju7_A 325 QQVLFRNYKSTDLTRTNKI----AKRIVSLPLW-EGMTKEIVEQIVICLGQKV 372 (377)
T ss_dssp GSGGGTTSCBSCCHHHHHH----HHHEEEECCC-TTCCHHHHHHHHHHHTC--
T ss_pred cchhhhcCCCCCCHHHHHH----HhCEEECCCC-CCCCHHHHHHHHHHHHHHH
Confidence 11221111 122222211 2468999999 9999999999988887654
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-25 Score=217.27 Aligned_cols=307 Identities=14% Similarity=0.202 Sum_probs=212.6
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+...++++.+|++++.+.+++|+||++|+.+++.++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 54 ~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~ 128 (391)
T 3dr4_A 54 VGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVT-----YCGATPVLVDNDPR 128 (391)
T ss_dssp CSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTT
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHH-----HCCCEEEEEecCcc
Confidence 45778999999999999999999999999999999999 8999999999999999987773 268888888765
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeCCC-
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHSIS- 245 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S~s- 245 (447)
|+++|++++ ++++++|+ ++||||.+.|+++|.++|+++|+++|+|++|+ +..+.....+ .|+++.|++
T Consensus 129 ~~~~d~~~l~~~~-~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~ 204 (391)
T 3dr4_A 129 TFNLDAAKLEALI-TPRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFG 204 (391)
T ss_dssp TCSBCGGGSGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBT
T ss_pred ccCcCHHHHHHhc-CCCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCC
Confidence 789999988 77888888 57899999999999999999999999999994 3333222221 367777755
Q ss_pred -ccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh--------hc--CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013210 246 -KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM--------LL--GPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 313 (447)
Q Consensus 246 -K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~--------~~--g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l 313 (447)
|++++ | + ||+++. ++++.+.+...+..... .. ...+....+...+..+..+....++..++++++
T Consensus 205 ~K~l~~-g-~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l 281 (391)
T 3dr4_A 205 NAIITT-G-E-GGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWY 281 (391)
T ss_dssp TSSSCC-B-S-CEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCcCCc-C-C-eEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99975 4 3 477765 45677777665432111 00 123344444444444455666777888888999
Q ss_pred HHHHHhCCCeeeCC--CCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccCccccc
Q 013210 314 ARRMKKLGLKVLYP--GLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 314 ~~~L~~~~~~v~~p--~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
.+.|++.+..+..+ .... ...+.++++.+++ ......+.+.|... | +.++.|... +.
T Consensus 282 ~~~L~~~g~~~~~~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~~l~~~L~~~---G-I~v~~~~~p-~~ 342 (391)
T 3dr4_A 282 EQKLARLGNRVTKPHVALTG--------------RHVFWMYTVRLGEGLSTTRDQVIKDLDAL---G-IESRPVFHP-MH 342 (391)
T ss_dssp HHHHGGGTTSEECCCCCTTS--------------CCCCSSEEEEECSSCSSCHHHHHHHHHHT---T-CCCEECCCC-GG
T ss_pred HHHhhcCCccccCcCCCCCC--------------cceeEEEEEEECCccchhHHHHHHHHHHC---C-CceeecCCc-cc
Confidence 99998876555433 1100 0233467888874 22356777777753 3 566655321 11
Q ss_pred ccccccc--CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 390 SCSGSST--SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 390 ~~~a~~~--~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.|.... ...++..... ....|||+++ ...++++++.+.++|+++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~-~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 343 IMPPYAHLATDDLKIAEAC----GVDGLNLPTH-AGLTEADIDRVIAALDQV 389 (391)
T ss_dssp GSGGGGGGCCTTCHHHHHH----HHHEEEECCC-TTCCHHHHHHHHHHHHTT
T ss_pred cChhhhhcCcCCChHHHHH----HhCeEEccCC-CCCCHHHHHHHHHHHHHH
Confidence 1111110 1112221211 1367999999 999999999999998765
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-25 Score=219.08 Aligned_cols=310 Identities=17% Similarity=0.187 Sum_probs=215.0
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+...++++.+|+++|.+.+++|+||++|+.++++++ +++||+|+++.++|+++...+. ..|.++++++.+
T Consensus 38 ~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~ 112 (393)
T 1mdo_A 38 GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIV-----LLGANPVMVDVDRDT 112 (393)
T ss_dssp SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTTT
T ss_pred ChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHH-----HCCCEEEEEeccCCc
Confidence 4677899999999999999999999999999999999 8999999999999999987763 268888888753
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC-CeEEEeCCC--c
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG-ADVVVHSIS--K 246 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g-~di~~~S~s--K 246 (447)
|+++|++++ ++++++|+++ ||+|.+.|+++|.++|+++|+++|+|++|+ +..+....++ .|+++.|+| |
T Consensus 113 ~~~d~~~l~~~l-~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K 188 (393)
T 1mdo_A 113 LMVTPEHIEAAI-TPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIK 188 (393)
T ss_dssp CCBCHHHHHHHC-CTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred CCCCHHHHHHhc-CCCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCC
Confidence 799999999 6789998864 589999999999999999999999999995 3333333346 899999999 8
Q ss_pred cccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhh------------------hcC--CCccHHHHHHHHccCCcHHHHHHH
Q 013210 247 FISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------------------LLG--PTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------------------~~g--~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
++++ | + ||+++.+ +++++.+...+..... ..| ..+....+......++.+.+..++
T Consensus 189 ~l~~-~-~-~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~ 265 (393)
T 1mdo_A 189 NITC-A-E-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNAR 265 (393)
T ss_dssp SSCS-S-S-CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHH
T ss_pred cccc-c-c-ceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8864 3 5 4888875 7888888765432110 011 123444444433344456667777
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC---HHHHHHHHHHhhcccccccccccc
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMAVSL 382 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~---~~~~~~l~~~l~~~~~~g~~~vs~ 382 (447)
..++++++.+.|++.+.++..+.....+ +.+.++++.++. ......+.+.|... | +.++.
T Consensus 266 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~l~~~l~~~---g-i~v~~ 328 (393)
T 1mdo_A 266 RAAIAAQYHQAMADLPFQPLSLPSWEHI-------------HAWHLFIIRVDEARCGITRDALMASLKTK---G-IGTGL 328 (393)
T ss_dssp HHHHHHHHHHHHHTSSCEECCCCSSCEE-------------CCCSCEEEECCHHHHSSCHHHHHHHHHHT---T-BCCBC
T ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCC-------------ceeEEEEEEecccccccCHHHHHHHHHhC---C-CCccc
Confidence 7788899999998877544321100001 234478998863 11356677777753 3 56666
Q ss_pred cCcccccccccccc---CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 383 GYYETLMSCSGSST---SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 383 G~~~s~~~~~a~~~---~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
|..+... .+.... ....+.... +....||||++ ...+++.++.+.++|+++.+.
T Consensus 329 ~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~lRi~~~-~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 329 HFRAAHT-QKYYRERFPTLTLPDTEW----NSERICSLPLF-PDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp CCCCGGG-SHHHHHHSTTCCCHHHHH----HHTTEEEECCC-TTCCHHHHHHHHHHHHHHHC-
T ss_pred ccCcccc-ChhhhccCCccCChhHHH----HHhCEEEecCC-CCCCHHHHHHHHHHHHHHHhc
Confidence 6432100 000000 000111000 01457999999 888899999999999877543
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=222.54 Aligned_cols=213 Identities=10% Similarity=0.058 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHh-CC-------CeEEE--eCChHHHHHHHHH--HhcCCC-----CeEEEeCCCchhHHHHHHhhcCccc
Q 013210 101 VLNLSRQMAALE-GT-------EAAYC--TASGMSAISSVLM--QLCSSG-----GHVVAARTLYGGTHALLTHFFPRAC 163 (447)
Q Consensus 101 ~~~l~~~ia~l~-g~-------~~~~~--tsggt~A~~~al~--~l~~~g-----d~Vi~~~~~y~~~~~~~~~~~~~~~ 163 (447)
..++++.+|+++ +. +.+++ |+||++|+.++++ .++.+| |+|+++.|+|+++...+. ..
T Consensus 76 ~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~-----~~ 150 (412)
T 1ajs_A 76 LAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFT-----TA 150 (412)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHH-----HT
T ss_pred CHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHH-----Hc
Confidence 468999999998 42 67999 9999999999964 456789 999999999999887763 25
Q ss_pred Cee-EEEeCC---C----CHHHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013210 164 NIT-TTFVDI---S----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL 230 (447)
Q Consensus 164 g~~-~~~v~~---~----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~ 230 (447)
|.+ +..++. + |+++|++++.+ +++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+.+
T Consensus 151 g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~ 230 (412)
T 1ajs_A 151 GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS 230 (412)
T ss_dssp TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccC
Confidence 677 776665 2 89999998843 36788889999999999976 56899999999999999999966644
Q ss_pred Cc-------c-----CCCCeEEEeCCCccccCCCCeeEEEEEc---ChHHHH----HHHHHhhhhhhhc-CCCccHHHHH
Q 013210 231 SP-------A-----RLGADVVVHSISKFISGGADIIAGAVCG---PANLVN----SMMDLHQGALMLL-GPTMNPKVAF 290 (447)
Q Consensus 231 ~~-------~-----~~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~~~----~l~~~~~~~~~~~-g~~~~~~~a~ 290 (447)
.. . ..+.++++.|+||.+|++|.|+ ||+++ ++++++ .+..... . ... .+.+.+.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~a~~ 307 (412)
T 1ajs_A 231 GNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERV-GNLTVVAKEPDSILRVLSQMQKIVR-V-TWSNPPAQGARIVA 307 (412)
T ss_dssp SCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHH-T-TTSSCCSHHHHHHH
T ss_pred CcccccchHHHHHhccCCcEEEEEecccccCCCCcce-EEEEEecCCHHHHHHHHHHHHHHHh-c-ccCCCChHHHHHHH
Confidence 21 1 1235699999999999999999 88887 777443 3433222 1 122 2444444444
Q ss_pred HHHccCC-------cHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 291 ELSERIP-------HLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 291 ~~~~~~~-------~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
.++.... ++....+++.++++++.+.|++++
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1ajs_A 308 RTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK 345 (412)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4444321 345566778899999999998875
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=220.42 Aligned_cols=218 Identities=11% Similarity=0.087 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHh-CCC-------eEEE--eCChHHHHHH--HHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 101 VLNLSRQMAALE-GTE-------AAYC--TASGMSAISS--VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 101 ~~~l~~~ia~l~-g~~-------~~~~--tsggt~A~~~--al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
..++++.+++++ |.+ .+++ |+||++|+++ .+..++.+||+|+++.|+|+++...+..++.. .|.++.
T Consensus 96 ~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~-~G~~v~ 174 (448)
T 3meb_A 96 FPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNK-LKVPYK 174 (448)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCT-TTSCCE
T ss_pred hHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHh-CCCeEE
Confidence 468999999987 754 6999 9999999988 45667789999999999999998877422222 577777
Q ss_pred EeCC---C-----CHHHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc--
Q 013210 169 FVDI---S-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-- 233 (447)
Q Consensus 169 ~v~~---~-----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-- 233 (447)
.++. + |+++|++++++ +++++|++++|+||||.+++ +++|+++|++||+++|+|++|..+.+...
T Consensus 175 ~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~ 254 (448)
T 3meb_A 175 EYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEA 254 (448)
T ss_dssp EECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHH
T ss_pred EEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCccc
Confidence 6664 2 88999999843 46888999999999999987 55699999999999999999976654421
Q ss_pred ----------CCCCeEEEeCCCccccCCCCeeEEEE--Ec---------Ch----HHHHHHHHHhhhhhhhcCCCccHHH
Q 013210 234 ----------RLGADVVVHSISKFISGGADIIAGAV--CG---------PA----NLVNSMMDLHQGALMLLGPTMNPKV 288 (447)
Q Consensus 234 ----------~~g~di~~~S~sK~~g~~g~~igG~l--~~---------~~----~~~~~l~~~~~~~~~~~g~~~~~~~ 288 (447)
....++++.|+||.+|++|.|+ ||+ +. ++ ++++.+...... .....+...+.+
T Consensus 255 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~a 332 (448)
T 3meb_A 255 DAFAVRMFVDAGVEVLVAQSFSKNFGLYGERI-GCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRK-TWSMSAIHGAYI 332 (448)
T ss_dssp HTHHHHHHHHTTCCEEEEEECTTTSCCGGGCC-EEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHT-TTSSCCHHHHHH
T ss_pred CchhHHHHhhcCCcEEEEecccccCCCccccc-eeeeeeeccccccccCCHHHHHHHHHHHHHHHhc-ccCCccHHHHHH
Confidence 1135688999999999999999 776 55 34 455555543331 111122233333
Q ss_pred HHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 289 AFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 289 a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
+..++... +.+....+++.++++++.+.|++++
T Consensus 333 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 372 (448)
T 3meb_A 333 VQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK 372 (448)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33333321 2245566778889999999998874
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=220.31 Aligned_cols=293 Identities=14% Similarity=0.091 Sum_probs=195.6
Q ss_pred CccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCC--eEEEeCCCchhHHHHHHhhcCcccCeeE
Q 013210 90 FFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGG--HVVAARTLYGGTHALLTHFFPRACNITT 167 (447)
Q Consensus 90 ~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd--~Vi~~~~~y~~~~~~~~~~~~~~~g~~~ 167 (447)
...|+. ++...++++.+|+++|.+..++++||++|+.+++++++.+|| .|+++.+.|....... ... ...|.++
T Consensus 40 ~~~y~~--~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~-~~~-~~~g~~~ 115 (357)
T 3lws_A 40 SDQYGT--GAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQD-GLK-ELHPIET 115 (357)
T ss_dssp CEETTE--ETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHH-HHSSCEE
T ss_pred cccccC--ChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccc-hhh-hccCcEE
Confidence 345553 467789999999999998888889999999999999888887 5666666655443210 000 1147788
Q ss_pred EEeCCC----CHHHHHHhhccCCceEEEEEcCCCCC-ccccC---HHHHHHHHHhcCCEEEEeCCCC-C----CCCCcc-
Q 013210 168 TFVDIS----DHEMVNSAIVQGRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFS-P----LVLSPA- 233 (447)
Q Consensus 168 ~~v~~~----d~~~l~~~i~~~~t~lV~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~~-~----~~~~~~- 233 (447)
..++.+ |+++|+++. ++++|++++|+||+ |.+.+ +++|+++|++||+++|+|++|. . ......
T Consensus 116 ~~v~~~~~~~d~~~l~~~~---~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~ 192 (357)
T 3lws_A 116 ILVGAADRLMTLDEIKALP---DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAE 192 (357)
T ss_dssp EECSCTTSCCCHHHHHTCC---SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHH
T ss_pred EEecCCCCCcCHHHHhcCc---CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHH
Confidence 887753 889998864 38999999999998 98886 8899999999999999999974 1 111111
Q ss_pred -CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCC-ccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 234 -RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 234 -~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
..+.|+++.|+||++++++ ||++++++++++.+...+... ..+.. ....++ .+...++...++++++.++++
T Consensus 193 ~~~~~d~~~~s~sK~~~~~~---gg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 266 (357)
T 3lws_A 193 IAGLFDSIYISFYKGLGGIA---GAILAGPAAFCQTARIWKRRY--GGDLISLYPYIV-SADYYYELRKDRMGQYYEQAK 266 (357)
T ss_dssp HHTTSSEEEEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHT--TCCCSCCHHHHH-HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCCEEEEeccccCCCCc---eEEEEcCHHHHHHHHHHHHHh--cCCcccchHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1247888999999996554 499999999998887665411 11111 122211 111222223334556778888
Q ss_pred HHHHHHHhCC-Ceee-CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccCccc
Q 013210 312 IFARRMKKLG-LKVL-YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 312 ~l~~~L~~~~-~~v~-~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++.+.|++++ .++. .|. .++++++.++.. .....+.+.|... | +.+..|...
T Consensus 267 ~l~~~L~~~~g~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---G-i~v~~g~~~- 322 (357)
T 3lws_A 267 QLAEQFNALPGVHTTPEVP-------------------VSNMFHLHFDGQAADISPKLEQVQEET---G-LGFVGYLVD- 322 (357)
T ss_dssp HHHHHHHTSTTEEEESSSC-------------------SSSEEEEEEESCHHHHHHHHHHHHHHH---C-EESCSCCEE-
T ss_pred HHHHHHHhCCCCeeccCCC-------------------cceEEEEEecCChHHHHHHHHHHHHhc---C-eEEeccccc-
Confidence 9999999874 4553 232 355889988742 2356677777653 3 454444110
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
+-..+++|+++| ........+++.++++++.+
T Consensus 323 ---------------------~~~~~~~r~~i~-~~~~~~~~~~l~~al~~l~~ 354 (357)
T 3lws_A 323 ---------------------KDGYCSTEISVG-DAYGELDQQTRDAGFARLRQ 354 (357)
T ss_dssp ---------------------CSSEEEEEEEBC-TTGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------CCCceEEEEEec-chhhhcCHHHHHHHHHHHHH
Confidence 101357999999 76555556666666666654
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=225.86 Aligned_cols=289 Identities=13% Similarity=0.127 Sum_probs=194.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhhcCc-------
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR------- 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~------- 161 (447)
..+...+++++++++.|.+.++||+||++|+.++++.+.. +| ++||+.++.|++...........
T Consensus 97 ~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~ 176 (420)
T 2pb2_A 97 TNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176 (420)
T ss_dssp CCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred CCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence 5677899999999999999999999999999999998764 67 49999999998764332111110
Q ss_pred -ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccc----cCHHHHHHHHHhcCCEEEEeCCCCCCCCC-----
Q 013210 162 -ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV----ANIPELSRLAHDKGVTVVVDNTFSPLVLS----- 231 (447)
Q Consensus 162 -~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v----~~l~~I~~la~~~gi~livD~~~~~~~~~----- 231 (447)
.....+..++.+|+++|++++ ++++++|++++++|++|.+ .++++|.++|++||+++|+||+|+++...
T Consensus 177 ~p~~~~~~~~~~~d~~~le~~i-~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~ 255 (420)
T 2pb2_A 177 GPKPADIIHVPFNDLHAVKAVM-DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFA 255 (420)
T ss_dssp SSCCSCEEEECTTCHHHHHHHC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSH
T ss_pred CCCCCCeEEecCCCHHHHHHHh-ccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHH
Confidence 011236677778999999999 6789999999999988863 36899999999999999999999655332
Q ss_pred --ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHH
Q 013210 232 --PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR 309 (447)
Q Consensus 232 --~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~ 309 (447)
......|++ |+||.++ +|.++ |+++.++++++.+..... .....++.+.+.++..++..++. ....+++.++
T Consensus 256 ~~~~~~~~dii--t~sK~l~-~G~~i-G~~~~~~~l~~~l~~~~~-~~t~~~~~~~~aa~~a~L~~~~~-~~~~~~~~~~ 329 (420)
T 2pb2_A 256 YMHYGVTPDIL--TSAKALG-GGFPV-SAMLTTQEIASAFHVGSH-GSTYGGNPLACAVAGAAFDIINT-PEVLQGIHTK 329 (420)
T ss_dssp HHHHTCCCSEE--EECGGGG-TTSCC-EEEEECHHHHTTCC-----CCEECCCHHHHHHHHHHHHHHSS-HHHHHHHHHH
T ss_pred HHhcCCCCCeE--Eeccccc-CCCce-EEEEEhHHHHHhhcCCCc-CcccCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 112346776 5789999 68888 888888887766644222 11233333444444444443333 3456777888
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH--HHHHHHHHhhcccccccccccccCccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE--KANRLMNYLQNYAQFGFMAVSLGYYET 387 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~--~~~~l~~~l~~~~~~g~~~vs~G~~~s 387 (447)
++++.+.|++.... +|..... .+.|.+++|.++... ....+.+.|... | +.+..+
T Consensus 330 ~~~l~~~L~~~~~~--~~~~~~~-------------~~~g~~~~v~~~~~~~~~~~~l~~~l~~~---G-i~v~~~---- 386 (420)
T 2pb2_A 330 RQQFVQHLQAIDEQ--FDIFSDI-------------RGMGLLIGAELKPKYKGRARDFLYAGAEA---G-VMVLNA---- 386 (420)
T ss_dssp HHHHHHHHHHHHHH--HCCEEEE-------------EEETTEEEEEECGGGTTCHHHHHHHHHHT---T-EECEES----
T ss_pred HHHHHHHHHHHHhc--CCCeEEE-------------EecceEEEEEECCCchHHHHHHHHHHHHC---C-CEEEeC----
Confidence 88888888764100 0100000 135779999997431 256677777652 3 233322
Q ss_pred cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 388 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+|||++ ...+++.++.+.++|+++
T Consensus 387 -----------------------~~~~iRl~~~-~~~t~eei~~~~~~l~~~ 414 (420)
T 2pb2_A 387 -----------------------GADVMRFAPS-LVVEEADIHEGMQRFAQA 414 (420)
T ss_dssp -----------------------STTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -----------------------CCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 1368999987 655666666666555543
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=211.56 Aligned_cols=278 Identities=12% Similarity=0.103 Sum_probs=196.5
Q ss_pred CCchHHHHHHHHHHHhCCCe-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH--HHhhcCccc--CeeEEEeC
Q 013210 97 FNPTVLNLSRQMAALEGTEA-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRAC--NITTTFVD 171 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~--~~~~~~~~~--g~~~~~v~ 171 (447)
..+..+++++.+++++|.+. +++|+||++|+.+++++++++||+|+++.+.|.++... +. . . |.++..++
T Consensus 41 ~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~----~-~~~g~~~~~v~ 115 (356)
T 1v72_A 41 TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPE----F-FSNGAKLMTVD 115 (356)
T ss_dssp CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHH----H-HTTSCEEEECC
T ss_pred cchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHH----H-HhCCcEEEEec
Confidence 45777899999999999654 89999999999999999888999999999998876544 32 2 4 77888887
Q ss_pred CC----CHHHHHH-hhcc------CCceEEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCC-----CCCc
Q 013210 172 IS----DHEMVNS-AIVQ------GRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPL-----VLSP 232 (447)
Q Consensus 172 ~~----d~~~l~~-~i~~------~~t~lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~-----~~~~ 232 (447)
.+ |+++|++ +++. +++++|++++|+| ||.+. ++++|.++|++||+++|+|++|..+ ...+
T Consensus 116 ~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~ 194 (356)
T 1v72_A 116 GPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP 194 (356)
T ss_dssp CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT
T ss_pred CCCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH
Confidence 65 8999999 8832 1689999999876 99965 5889999999999999999998421 1222
Q ss_pred cC----CCCeEEEeCCCccccCCCCeeE-EEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC--CcHHHHHHH
Q 013210 233 AR----LGADVVVHSISKFISGGADIIA-GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKE 305 (447)
Q Consensus 233 ~~----~g~di~~~S~sK~~g~~g~~ig-G~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~~~ 305 (447)
.. .+.|+++.|+||+ ++ ++| |+++.++++++.+...+.... .........+......+ .......++
T Consensus 195 ~~~~~~~~~d~~~~s~sK~-g~---~~G~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (356)
T 1v72_A 195 AEMTWKAGVDALSFGATKN-GV---LAAEAIVLFNTSLATEMSYRRKRAG--HLSSKMRFLSAQIDAYLTDDLWLRNARK 268 (356)
T ss_dssp TTTTGGGTCCEEEECCGGG-TC---SSCEEEEESSGGGHHHHHHHHHHTT--CCCSSTHHHHHHHHHHTSTTHHHHHHHH
T ss_pred HHhhhhhcCCEEEEecccC-CC---cCccEEEEECHHHHhhHHHHhhccC--chhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22 2678999999999 43 344 688889998888765543111 11111222222222222 223345667
Q ss_pred HHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccC
Q 013210 306 HCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
+.++++++.+.|+++ +.++..|. .+.++++.++. .+.+.|... | +.+..|.
T Consensus 269 ~~~~~~~l~~~L~~~~g~~~~~~~-------------------~~~~~~~~~~~-----~~~~~l~~~---g-i~v~~g~ 320 (356)
T 1v72_A 269 ANAAAQRLAQGLEGLGGVEVLGGT-------------------EANILFCRLDS-----AMIDALLKA---G-FGFYHDR 320 (356)
T ss_dssp HHHHHHHHHHHHTTCTTEEEESCC-------------------CSSEEEEEECH-----HHHHHHHHT---T-CBCBCSS
T ss_pred HHHHHHHHHHHHhhCCCcEEccCC-------------------CccEEEEEcCH-----HHHHHHHhc---C-eEEeccc
Confidence 788889999999875 44555442 34588888852 455666542 3 3444331
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
++ ++.+|||++ ...+++.++.+.++|+++.
T Consensus 321 -----------------------~~--~~~iRi~~~-~~~~~~~i~~~~~~l~~~l 350 (356)
T 1v72_A 321 -----------------------WG--PNVVRFVTS-FATTAEDVDHLLNQVRLAA 350 (356)
T ss_dssp -----------------------SS--TTEEEEECC-TTCCHHHHHHHHHHHHHTC
T ss_pred -----------------------cC--CCeEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 01 478999999 8888888888888887664
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=219.46 Aligned_cols=300 Identities=20% Similarity=0.177 Sum_probs=204.8
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+...++++.+|+++|.+.+++++||++|+..+++++ +++||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 62 ~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~ 136 (399)
T 2oga_A 62 GPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVS-----ATGATPVPVEPHEDH 136 (399)
T ss_dssp SHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCSSS
T ss_pred chhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HCCCEEEEEecCCCC
Confidence 3667899999999999999999999999999999998 8899999999999999887763 258888887643
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCCccCCC--CeEEEeCC--C
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARLG--ADVVVHSI--S 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~~~~~g--~di~~~S~--s 245 (447)
|+++|++++ ++++++|+ ++||+|.+.|+++|.++|+++|+++|+|++|+.. .++...++ .|+++.|+ +
T Consensus 137 ~~~d~~~l~~~i-~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~s 212 (399)
T 2oga_A 137 PTLDPLLVEKAI-TPRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPG 212 (399)
T ss_dssp SSBCHHHHHHHC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTT
T ss_pred CCcCHHHHHHhc-CCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCC
Confidence 799999999 67888887 5789999999999999999999999999999533 23333334 69999999 6
Q ss_pred ccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhh------hcC--CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 246 KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
|++|++| +. |+++.+ +++++.+...+..... ..| ..+++..++++...++.+....++..++++++.+.
T Consensus 213 K~~~~~G-~~-g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~ 290 (399)
T 2oga_A 213 KNLGCFG-DG-GAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSG 290 (399)
T ss_dssp SSSCCSS-CC-EEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCC-ce-EEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999878 65 888775 8888888765442100 001 13344444444444555555666777788888888
Q ss_pred HHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccc
Q 013210 317 MKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 395 (447)
Q Consensus 317 L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~ 395 (447)
|+++ +.++..+ ++. +.+.++.|.+... ....+.+.|... | +.++.+.....-..+
T Consensus 291 L~~~~g~~~~~~--~~~--------------~~~~~~~~~~~~~-~~~~l~~~L~~~---g-I~v~~~~~~~~~~~~--- 346 (399)
T 2oga_A 291 LAGLPGIGLPVT--APD--------------TDPVWHLFTVRTE-RRDELRSHLDAR---G-IDTLTHYPVPVHLSP--- 346 (399)
T ss_dssp TTTCTTCBCCCC--CTT--------------EECCCSSEEEECS-SHHHHHHHHHHT---T-BCCBCSCSSCGGGSH---
T ss_pred hccCCCccccCC--CCC--------------CcceeEEEEEECC-CHHHHHHHHHHC---C-CceecCCCCccccch---
Confidence 8776 3333211 110 1111222333211 245666677653 3 444443210000000
Q ss_pred cCCCCCHHHHHhcCCC-----------CCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 396 TSSELNAEEKALAGIS-----------AGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 396 ~~~~~~~~~~~~~g~~-----------~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
....+|.. .+.||||++ ...+++.++.+.++|+++.+
T Consensus 347 --------~~~~~~~~~~~~p~~~~~~~~~lRi~~~-~~~t~edi~~~~~~l~~~~~ 394 (399)
T 2oga_A 347 --------AYAGEAPPEGSLPRAESFARQVLSLPIG-PHLERPQALRVIDAVREWAE 394 (399)
T ss_dssp --------HHHTTSCCTTSCHHHHHHHHHEEEECCS-TTCCHHHHHHHHHHHHHHHH
T ss_pred --------hhcccCCCCCCChhHHHHHhCEEEccCC-CCCCHHHHHHHHHHHHHHHH
Confidence 01111211 267999999 88888888888888877643
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=226.30 Aligned_cols=317 Identities=10% Similarity=0.031 Sum_probs=202.1
Q ss_pred ccccccccCCH-HHHHHhhcCCCCCCCCCc---cccCCCCchHHHHHHHHHHHhCCC---eEEE-eCChHHHHHHHHHHh
Q 013210 63 EASATFTVMEP-ETMRRMFAGELGPDRDFF---IYSRHFNPTVLNLSRQMAALEGTE---AAYC-TASGMSAISSVLMQL 134 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~l~~~ia~l~g~~---~~~~-tsggt~A~~~al~~l 134 (447)
+.++|++.+++ ++|.+.+...++||+|.| ..++.....++++|+.+|+++|++ .++| |+|||+|+++++.++
T Consensus 32 ~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l 111 (386)
T 3qm2_A 32 SSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNL 111 (386)
T ss_dssp CSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc
Confidence 35677777776 778777777788888854 345556678899999999999984 3888 699999999999999
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--------CHHHHHHhhccCCceEEEEEcCCCCCccc-cCH
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANI 205 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~i~~~~t~lV~i~~~~NptG~v-~~l 205 (447)
+++||+|++...++.+.. +.....+ .| ++++++.+ ++++++.++ +++|++|.+.+..|.+|.+ +|+
T Consensus 112 ~~~gd~v~~~~~~~~~~~--~~~~a~~-~G-~v~~v~~~~~~~G~~~~~~~~~~~l-~~~t~lV~~~h~et~tG~~i~pi 186 (386)
T 3qm2_A 112 LGDKTTADYVDAGYWAAS--AIKEAKK-YC-APQIIDAKITVDGKRAVKPMREWQL-SDNAAYLHYCPNETIDGIAIDET 186 (386)
T ss_dssp CTTCCEEEEEESSHHHHH--HHHHHTT-TS-EEEEEECEEEETTEEEECCGGGCCC-CTTCSCEEECSEETTTTEECCCC
T ss_pred cCCCCeEEEEeCCHHHHH--HHHHHHH-hC-CeEEEecCcccCCCCCCchHHHhhc-CCCCcEEEEECCcCCcCEecCch
Confidence 999999876666655542 2233344 68 77776543 456777777 7899999998888888996 999
Q ss_pred HHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHH----------HHh
Q 013210 206 PELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM----------DLH 273 (447)
Q Consensus 206 ~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~----------~~~ 273 (447)
++|. +|+++++|.+| +..+++..+++ ++++|.||++||+| + |+++.++++++.+. ...
T Consensus 187 ~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G--~-g~l~v~~~~~~~~~~~~p~~~~~~~~~ 256 (386)
T 3qm2_A 187 PDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAG--L-TLVIVREDLLGKAHESCPSILDYTVLN 256 (386)
T ss_dssp CCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTT--E-EEEEEEGGGCSCCCTTSCGGGCHHHHH
T ss_pred hhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCc--c-EEEEECHHHHhhhcccCCcHHHHHHHh
Confidence 9885 79999999999 56777777775 57799999999888 5 88887766532211 111
Q ss_pred hhhhhhcCC-CccHHH-HHHHHccCC---cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCc
Q 013210 274 QGALMLLGP-TMNPKV-AFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 348 (447)
Q Consensus 274 ~~~~~~~g~-~~~~~~-a~~~~~~~~---~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~ 348 (447)
. .....++ +..... ...++..+. .+....++..++++++.+.|++.++...... +. ...
T Consensus 257 ~-~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~----~~-----------~rs 320 (386)
T 3qm2_A 257 D-NDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVA----QA-----------NRS 320 (386)
T ss_dssp H-C-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBC----GG-----------GBC
T ss_pred h-cCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCC----HH-----------HcC
Confidence 1 0011222 222222 222222221 2455667778899999999988764111111 11 012
Q ss_pred CcEEEEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013210 349 GGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 427 (447)
Q Consensus 349 g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 427 (447)
.++++|.+++. .+ ..++..|... | +.+..|.. | .+.+|+|++ ..++++
T Consensus 321 ~~iv~f~~~~~~~~-~~~~~~L~~~---g-I~~~~g~~--------~-----------------~~~iRiS~~-~~~t~e 369 (386)
T 3qm2_A 321 RMNVPFQLADNTLD-KVFLEESFAA---G-LHALKGHR--------V-----------------VGGMRASIY-NAMPIE 369 (386)
T ss_dssp SSEEEEEESSGGGH-HHHHHHHHHT---T-EECCBCCT--------T-----------------TCSEEEECC-TTSCHH
T ss_pred ceEEEEECCCcccc-HHHHHHHHHC---C-CEEeCCCC--------C-----------------cCeEEEEcC-CCCCHH
Confidence 35999999852 22 5677777653 3 44443411 0 145999999 999999
Q ss_pred HHHHHHHHHHHhhh
Q 013210 428 RWSQFEKALSRMQD 441 (447)
Q Consensus 428 ~i~~l~~al~~~~~ 441 (447)
+|+.|.++|+++.+
T Consensus 370 dId~l~~~l~~~~~ 383 (386)
T 3qm2_A 370 GVKALTDFMIDFER 383 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=217.62 Aligned_cols=312 Identities=17% Similarity=0.195 Sum_probs=210.4
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
....+++++.+++++|.+.+++++||++|+.++++++ +++||+|+++.++|+++...+. ..|.++++++.+
T Consensus 41 ~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~ 115 (418)
T 2c81_A 41 ESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVL-----NVNALPVFVDVEADT 115 (418)
T ss_dssp CCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHH-----HcCCEEEEEecCCCC
Confidence 3457899999999999999999999999999999998 8899999999999999987773 268888888764
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCCC--CeEEEeCC--C
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLG--ADVVVHSI--S 245 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~g--~di~~~S~--s 245 (447)
|+++|++++ ++++++|++ +||+|.+.++++|.++|+++|+++|+|++|+.+. ++...++ .|+++.|+ |
T Consensus 116 ~~~d~~~l~~~i-~~~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~ 191 (418)
T 2c81_A 116 YCIDPQLIKSAI-TDKTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQG 191 (418)
T ss_dssp CSBCHHHHGGGC-CTTEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred CCcCHHHHHHhh-CCCCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCC
Confidence 899999999 678998885 5689999999999999999999999999995543 3222221 35666666 9
Q ss_pred ccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh------------h--c------C--CCccHHHHHHHHccCCcHHHH
Q 013210 246 KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM------------L--L------G--PTMNPKVAFELSERIPHLGLR 302 (447)
Q Consensus 246 K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~------------~--~------g--~~~~~~~a~~~~~~~~~l~~~ 302 (447)
|++++ | +. |+++. ++++++.+...+..... . . | ..+....+......++.+...
T Consensus 192 K~~~~-g-~~-g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~ 268 (418)
T 2c81_A 192 KVLTA-G-EG-GIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDK 268 (418)
T ss_dssp SSSCS-S-SC-EEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHH
T ss_pred cccCC-C-Ce-EEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 99997 6 64 99888 47888877765432110 0 0 0 012333333333345567777
Q ss_pred HHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC----HHHHHHHHHHhhccccccc
Q 013210 303 MKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET----EEKANRLMNYLQNYAQFGF 377 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~----~~~~~~l~~~l~~~~~~g~ 377 (447)
.++..++++++.+.|++++ .++..+.. ... ...-.++.+.+++ ......+.+.|... +|
T Consensus 269 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g- 332 (418)
T 2c81_A 269 NAIREKNAMFLNDALSKIDGIKVMKRPP-QVS------------RQTYYGYVFRFDPVKFGGLNADQFCEILREK--LN- 332 (418)
T ss_dssp HHHHHHHHHHHHHHHTTSTTEEECCCCT-TEE------------ECCCSEEEEEECGGGTTTCCHHHHHHHHHHH--HT-
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCCCC-CCc------------ccccEEEEEEEccccccccCHHHHHHHHHHc--CC-
Confidence 7888888999999998774 34442210 000 0011266677762 22356677777653 24
Q ss_pred cc---ccccCcccccccccccc--C----------------CCCCHHHHHhcCCCCCeEEEEeCCCCC-HHHHHHHHHHH
Q 013210 378 MA---VSLGYYETLMSCSGSST--S----------------SELNAEEKALAGISAGLVRMSVGYLGT-LDQRWSQFEKA 435 (447)
Q Consensus 378 ~~---vs~G~~~s~~~~~a~~~--~----------------~~~~~~~~~~~g~~~~~iRiS~g~~~~-~~~~i~~l~~a 435 (447)
+. ++.|... +...|.... + ..++..+.. ..+.||||++ ... ++++++.+.++
T Consensus 333 I~~~~v~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~-~~~gt~edi~~~~~~ 406 (418)
T 2c81_A 333 MGTFYLHPPYLP-VHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERA----SGQSIVIHHA-ILLAEPSHLSLLVDA 406 (418)
T ss_dssp CCTTTEECCCCC-GGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHH----HHHEEEEEGG-GGGSCHHHHHHHHHH
T ss_pred CCcccccccccc-cccCchhcccccccccccccccccccccCCChHHHHH----HhCEEEecCC-ccCCCHHHHHHHHHH
Confidence 45 6666421 100111000 0 001110000 1368999999 888 88899999999
Q ss_pred HHHhhhcC
Q 013210 436 LSRMQDSG 443 (447)
Q Consensus 436 l~~~~~~~ 443 (447)
|+++.+..
T Consensus 407 l~~~~~~~ 414 (418)
T 2c81_A 407 VAELARKF 414 (418)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 88775443
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-26 Score=224.17 Aligned_cols=326 Identities=11% Similarity=0.042 Sum_probs=221.0
Q ss_pred CccccccccccccccCC-H-HHHHHhhcCCCCCCCCCccc---cCCCCchHHHHHHHHHHHhCCC---eEEE-eCChHHH
Q 013210 56 GGVNMSIEASATFTVME-P-ETMRRMFAGELGPDRDFFIY---SRHFNPTVLNLSRQMAALEGTE---AAYC-TASGMSA 126 (447)
Q Consensus 56 ~~~~~pi~~att~~~~~-~-~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~l~~~ia~l~g~~---~~~~-tsggt~A 126 (447)
|.-..-++.+|+...|. + ++|.+.+...++|++|.+.. +......++++|+.+++++|++ .++| |+|||+|
T Consensus 10 ~~~~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a 89 (377)
T 3e77_A 10 GVDLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQ 89 (377)
T ss_dssp -----CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHH
T ss_pred ccCcccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHH
Confidence 33344577778777764 5 88888888888888886443 3344567899999999999985 3888 5899999
Q ss_pred HHHHHHHhcCC--CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 127 ISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 127 ~~~al~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
+++++.+++.+ ||+|++...++.+.. +...+.+ .|..+.+++.+ ++++++.++ +++|++|.+.+..|.+
T Consensus 90 ~n~a~~~l~~~~~Gd~v~~~~~g~~~~~--~~~~a~~-~G~~~~~~~~~~~~~~~~~~~~~~i-~~~t~lV~~~h~et~t 165 (377)
T 3e77_A 90 FSAVPLNLIGLKAGRCADYVVTGAWSAK--AAEEAKK-FGTINIVHPKLGSYTKIPDPSTWNL-NPDASYVYYCANETVH 165 (377)
T ss_dssp HHHHHHHHGGGSTTCEEEECCCSHHHHH--HHHHHTT-TSEEEECSCCCSSSCSCCCGGGCCC-CTTCSCEEEESEETTT
T ss_pred HHHHHHhccCCCCCCeEEEEECCHHHHH--HHHHHHH-hCCceEEeccCCCcCCCCChHHhcc-CCCccEEEEeCccCch
Confidence 99999998865 899988887776542 2244455 68888776653 456666667 7889999999888889
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHH-------
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM------- 270 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~------- 270 (447)
|.++|+ +|+++|+++++|.+| +..+++..+++ +++.|.||++|++| + |+++.++++++.+.
T Consensus 166 G~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G--~-g~l~~~~~~l~~~~~~~p~~~ 235 (377)
T 3e77_A 166 GVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAG--V-TVVIVRDDLLGFALRECPSVL 235 (377)
T ss_dssp TEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTT--C-EEEEEETTSCSCCCTTSCGGG
T ss_pred heEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCc--c-EEEEEcHHHHhhccCCCCchh
Confidence 999998 477899999999999 56677777776 58899999999888 4 77877665532221
Q ss_pred ---HHhhhhhhhcCCCccHHHHHH---HHccC--C-cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHH
Q 013210 271 ---DLHQGALMLLGPTMNPKVAFE---LSERI--P-HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKS 340 (447)
Q Consensus 271 ---~~~~~~~~~~g~~~~~~~a~~---~~~~~--~-~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~ 340 (447)
...... ...+ +++....+. ++..+ . .+..+.++..++++++.+.|++++ +.+. +.. +.
T Consensus 236 ~~~~~~~~~-~~~~-Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~-~~~---~~------ 303 (377)
T 3e77_A 236 EYKVQAGNS-SLYN-TPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVC-PVE---PQ------ 303 (377)
T ss_dssp CHHHHHTTT-TCSS-CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEEC-CSC---GG------
T ss_pred hHHHHhhcC-CCCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceec-CCC---HH------
Confidence 111101 1122 222222221 22211 1 355667778899999999999874 4432 211 11
Q ss_pred HhccCCCcCcEEEEEeCC----HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEE
Q 013210 341 MANKEYGFGGLLCLDMET----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 416 (447)
Q Consensus 341 ~~~~~~g~g~~~~~~l~~----~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iR 416 (447)
...+.+++|.+++ .+....+++.+.. .| +.+..|.. ..+.+|
T Consensus 304 -----~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~---~G-i~~~~g~~-------------------------~~g~iR 349 (377)
T 3e77_A 304 -----NRSKMNIPFRIGNAKGDDALEKRFLDKALE---LN-MLSLKGHR-------------------------SVGGIR 349 (377)
T ss_dssp -----GBCSSEEEEEESSTTCCHHHHHHHHHHHHH---TT-EESCBCCT-------------------------TTCSEE
T ss_pred -----HcCCcEEEEEcCCCCCchhHHHHHHHHHHH---CC-cEEeCCCC-------------------------cCCEEE
Confidence 0123479999985 2211456776664 23 34333310 124699
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 417 MSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 417 iS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
+|++ ..++++.|+.|.++|+++.+.
T Consensus 350 iS~~-~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 350 ASLY-NAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp EECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred EECC-CCCCHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999987643
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-24 Score=214.50 Aligned_cols=329 Identities=12% Similarity=0.054 Sum_probs=220.0
Q ss_pred ccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCC
Q 013210 69 TVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAART 146 (447)
Q Consensus 69 ~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~ 146 (447)
..+++ +.+.+.+...|.+ ...+...++++.+|+++|.+.+++|+||++|++++++++ +++||+|+++.+
T Consensus 10 ~~~~v~~a~~~~~~~~~~~---------~~g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~ 80 (394)
T 1o69_A 10 MGGNELKYIEEVFKSNYIA---------PLGEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSF 80 (394)
T ss_dssp --CCHHHHHHHHHHHTTTS---------CTTHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESS
T ss_pred CCHHHHHHHHHHHHcCCcc---------CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCC
Confidence 33555 6666666432211 123667899999999999999999999999999999998 899999999999
Q ss_pred CchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccC--CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEE
Q 013210 147 LYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTV 219 (447)
Q Consensus 147 ~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~--~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~l 219 (447)
+|+++...+. ..|.++.+++.+ |+++|++++... ++++|++++ |+|...++++|.++|+++|+++
T Consensus 81 ~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~l 152 (394)
T 1o69_A 81 TFIASVAPIC-----YLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVL 152 (394)
T ss_dssp SCGGGTHHHH-----HTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEE
T ss_pred ccHHHHHHHH-----HcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEE
Confidence 9999987773 258888888754 899999998322 689999875 8999999999999999999999
Q ss_pred EEeCCCC-CCCCCcc---C-CCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCC----------
Q 013210 220 VVDNTFS-PLVLSPA---R-LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPT---------- 283 (447)
Q Consensus 220 ivD~~~~-~~~~~~~---~-~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~---------- 283 (447)
|+|++|+ ++.+... . .++|+.++|.+|.+++. ++ |+++.+ +++++.+...+.... ...+.
T Consensus 153 i~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~--~~-G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~g~~~ 228 (394)
T 1o69_A 153 IEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTS--GG-GMLIGKNKEKIEKARFYSTQAR-ENCLHYEHLDYGYNY 228 (394)
T ss_dssp EEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS--SC-EEEEESCHHHHHHHHHHTBTCC-CSSSSCCCSSCCCBC
T ss_pred EEECcCcccceeCCcccccccCcEEEEEeCCccCCCC--Cc-eEEEECCHHHHHHHHHHHHhcc-ccCccccccccCccc
Confidence 9999995 4433221 1 24677777779988854 44 999885 788888876544210 00000
Q ss_pred -ccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH---
Q 013210 284 -MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--- 359 (447)
Q Consensus 284 -~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--- 359 (447)
+.+..+...+..++.+.+.+++..++++++.+.|++. .++..+ ..... ..-.+++|.++..
T Consensus 229 ~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~--~~~~~------------~~~~~~~i~~~~~~~~ 293 (394)
T 1o69_A 229 RLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY-FSFLDE--LENSR------------SNRWLSTALINFDKNE 293 (394)
T ss_dssp BCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-EECCCC--CTTEE------------CCCSSEEEEESCCGGG
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccCC--CCCCc------------ceeEEEEEEecchhhc
Confidence 2334444433345667778888999999999999876 433211 11000 0011577887631
Q ss_pred ------------------HHHHHHHHHhhcccccccccccccCccccccccccccC--CCCCHHHHHhcCCCCCeEEEEe
Q 013210 360 ------------------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS--SELNAEEKALAGISAGLVRMSV 419 (447)
Q Consensus 360 ------------------~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~--~~~~~~~~~~~g~~~~~iRiS~ 419 (447)
.....+.+.|... | +.++.|..+... .|..... ...+-.+.. ....+|+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g-I~v~~~~~~~~~-~p~~~~~~~~~~~~~~~~----~~~~~~~~~ 364 (394)
T 1o69_A 294 LNACQKDINISQKNITLHPKISKLIEDLKNK---Q-IETRPLWKAMHT-QEVFKGAKAYLNGNSELF----FQKGICLPS 364 (394)
T ss_dssp SCCCCEEEECCCCCCCCCHHHHHHHHHHHHT---T-CCCBCCCCCGGG-CGGGTTCEEEECSHHHHH----HHHEEEECC
T ss_pred cccccccccccccccccccCHHHHHHHHHHc---C-CcccccCCcccc-chhhhccCCCCChHHHHH----hcCeEEccC
Confidence 1356788888753 3 577766433111 1111000 001111111 014566667
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcC
Q 013210 420 GYLGTLDQRWSQFEKALSRMQDSG 443 (447)
Q Consensus 420 g~~~~~~~~i~~l~~al~~~~~~~ 443 (447)
+ ...++++++.+.++|+++...+
T Consensus 365 ~-~~~t~edi~~~~~~l~~~~~~~ 387 (394)
T 1o69_A 365 G-TAMSKDDVYEISKLILKSIKAG 387 (394)
T ss_dssp C-TTCCHHHHHHHHHHHHHHHC--
T ss_pred C-CCCCHHHHHHHHHHHHHHHhcc
Confidence 8 8899999999999998876543
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=225.22 Aligned_cols=288 Identities=14% Similarity=0.135 Sum_probs=187.7
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc---------CCC-CeEEEeCCCchhHHHHHHhhcCc-----
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC---------SSG-GHVVAARTLYGGTHALLTHFFPR----- 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~---------~~g-d~Vi~~~~~y~~~~~~~~~~~~~----- 161 (447)
..+...+++++++++.|.+.++||+||++|+..+++.+. .+| ++||+.++.|++...........
T Consensus 105 ~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 184 (433)
T 1z7d_A 105 FSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTS 184 (433)
T ss_dssp EEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-------------------
T ss_pred CCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccc
Confidence 456778999999999999999999999999999998753 357 89999999998865432111000
Q ss_pred ---ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCC---
Q 013210 162 ---ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS--- 231 (447)
Q Consensus 162 ---~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~--- 231 (447)
.....+..++.+|+++|+++++++++++|++++++|++|.+. ++++|.++|++||+++|+||+|+++...
T Consensus 185 ~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~ 264 (433)
T 1z7d_A 185 NFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL 264 (433)
T ss_dssp -------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred cCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcc
Confidence 001356677778999999999446789999998888999876 6999999999999999999999655321
Q ss_pred ----ccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHH
Q 013210 232 ----PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH 306 (447)
Q Consensus 232 ----~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~ 306 (447)
......|++ |++|.++ +| .++ |++++++++++.+..... ..+..++.+...++..++..++. ....++.
T Consensus 265 ~~~~~~~~~~di~--t~sK~l~-~G~~~~-G~v~~~~~~~~~l~~~~~-~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~ 338 (433)
T 1z7d_A 265 LCVHHYNVKPDVI--LLGKALS-GGHYPI-SAVLANDDIMLVIKPGEH-GSTYGGNPLAASICVEALNVLIN-EKLCENA 338 (433)
T ss_dssp SGGGGGTCCCSEE--EECGGGG-TTSSCC-EEEEECHHHHTTCCTTCC-CCTTTTCHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred hhhHhcCCCCCEE--EECcccc-CCCCCe-EEEEECHHHHhhhccccc-cccCCCCHHHHHHHHHHHHHHHh-ccHHHHH
Confidence 112346766 6889999 57 787 999999988776643222 11223333333333333322211 1345667
Q ss_pred HHHHHHHHHHHHhC--CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccc
Q 013210 307 CHRALIFARRMKKL--GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 307 ~~~~~~l~~~L~~~--~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
.++++++.+.|++. +.... .. ..+.|.++++.++.. .....+.+.|... | +.+..+
T Consensus 339 ~~~~~~l~~~L~~l~~~~~~~----~~-------------~~~~g~~~~i~~~~~~~~~~~~~~~l~~~---G-v~v~~~ 397 (433)
T 1z7d_A 339 EKLGGPFLENLKRELKDSKIV----RD-------------VRGKGLLCAIEFKNELVNVLDICLKLKEN---G-LITRDV 397 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCTTE----EE-------------EEEETTEEEEEECTTTCCHHHHHHHHHHT---T-EECCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCe----EE-------------EEeeeeEEEEEEccChhHHHHHHHHHHHC---C-eEEecC
Confidence 78888888888764 22110 00 013677999999743 2255677777652 3 232211
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
..+.|||+++ ...+++.++.+.++|+++
T Consensus 398 ---------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 425 (433)
T 1z7d_A 398 ---------------------------HDKTIRLTPP-LCITKEQLDECTEIIVKT 425 (433)
T ss_dssp ---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 1468999998 766666666666666554
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=225.58 Aligned_cols=288 Identities=14% Similarity=0.112 Sum_probs=196.3
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc---------CCC-CeEEEeCCCchhHHHHHHhhcCc-----
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC---------SSG-GHVVAARTLYGGTHALLTHFFPR----- 161 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~---------~~g-d~Vi~~~~~y~~~~~~~~~~~~~----- 161 (447)
..+...++++.+++++|.+.++||+||++|+..+++.+. .+| ++||+.++.|++...........
T Consensus 116 ~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~ 195 (439)
T 2oat_A 116 YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD 195 (439)
T ss_dssp EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhccc
Confidence 456778999999999999999999999999999998764 356 89999999998764332111110
Q ss_pred ---ccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCC---
Q 013210 162 ---ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS--- 231 (447)
Q Consensus 162 ---~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~--- 231 (447)
.....+..++.+|+++|+++++++++++|++++++|++|.+. ++++|.++|++||+++|+||+|+++...
T Consensus 196 ~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~ 275 (439)
T 2oat_A 196 GFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 275 (439)
T ss_dssp TSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcc
Confidence 011456777778999999999446789999998889999876 6999999999999999999999655321
Q ss_pred ----ccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHH
Q 013210 232 ----PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH 306 (447)
Q Consensus 232 ----~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~ 306 (447)
......|++ |++|.+++ | .++ |++++++++++.+..... ..+..++.+...++..++..++. ....++.
T Consensus 276 ~~~~~~~~~~Di~--t~sK~l~~-G~~~~-G~v~~~~~~~~~l~~~~~-~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~ 349 (439)
T 2oat_A 276 LAVDYENVRPDIV--LLGKALSG-GLYPV-SAVLCDDDIMLTIKPGEH-GSTYGGNPLGCRVAIAALEVLEE-ENLAENA 349 (439)
T ss_dssp SGGGGGTCCCSEE--EECGGGGT-TSSCC-EEEEECHHHHTTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred hhHHHhCCCCcEE--EecccccC-CCCCe-EEEEECHHHHhccCCCCc-ccCCCcCHHHHHHHHHHHHHHhh-hhHHHHH
Confidence 112245766 78899995 7 787 999999888776653222 11223333333333333322211 1345677
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccC
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
.++++++.+.|++.+..+.. .. .+.|.++++.++.. .....+.+.|... | +.+..+
T Consensus 350 ~~~~~~l~~~L~~l~~~~~~----~~-------------~~~g~~~~v~l~~~~~~~~~~l~~~l~~~---G-v~v~~~- 407 (439)
T 2oat_A 350 DKLGIILRNELMKLPSDVVT----AV-------------RGKGLLNAIVIKETKDWDAWKVCLRLRDN---G-LLAKPT- 407 (439)
T ss_dssp HHHHHHHHHHHTTSCTTTEE----EE-------------EEETTEEEEEECCCSSCCHHHHHHHHHHT---T-EECCBS-
T ss_pred HHHHHHHHHHHHHhcCCCcE----EE-------------EeeeeEEEEEEecCccHHHHHHHHHHHHC---C-eEEecC-
Confidence 88889999999876321110 00 14677999999743 1245677777652 3 222211
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+||+++ ...+++.++.+.++|+++
T Consensus 408 --------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~~ 435 (439)
T 2oat_A 408 --------------------------HGDIIRFAPP-LVIKEDELRESIEIINKT 435 (439)
T ss_dssp --------------------------SSSEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred --------------------------CCCEEEEECc-cCCCHHHHHHHHHHHHHH
Confidence 1478999998 777777777777777654
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=211.17 Aligned_cols=289 Identities=13% Similarity=0.070 Sum_probs=199.1
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH--HHhhcCcccCee
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRACNIT 166 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~--~~~~~~~~~g~~ 166 (447)
|..++...+..+++++.+++++|.+ .+++|+||++|+..++++++++||+|+++.++|+++... +. . .|.+
T Consensus 41 ~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~----~-~g~~ 115 (359)
T 1svv_A 41 QHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIE----A-TGHK 115 (359)
T ss_dssp CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHH----H-TTCC
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHh----c-CCCe
Confidence 3344455678899999999999864 599999999999999999999999999999999988652 31 2 5888
Q ss_pred EEEeCCC----CHHHHHHhhccC------CceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCC-----C
Q 013210 167 TTFVDIS----DHEMVNSAIVQG------RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSP-----L 228 (447)
Q Consensus 167 ~~~v~~~----d~~~l~~~i~~~------~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~-----~ 228 (447)
+..++.+ |+++|++++++. ++++|++++| ||||.+.| +++|.++|++||+++|+|++|.. .
T Consensus 116 ~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~ 194 (359)
T 1svv_A 116 VVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSP 194 (359)
T ss_dssp EEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTST
T ss_pred eEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCC
Confidence 8888765 699999998433 3899999999 79999998 88999999999999999999822 2
Q ss_pred CCCccC----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 229 VLSPAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 229 ~~~~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
...... ...|+++.|++|+.++.| + |+++.++++++.+...................+.........+....+
T Consensus 195 ~~~~~~~~~~~~~d~~~~s~~K~g~~~~--~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (359)
T 1svv_A 195 VNDLTLADIARLTDMFYIGATKAGGMFG--E-ALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGA 271 (359)
T ss_dssp TCCCCHHHHHHHCSEEEEECTTTTCSSC--E-EEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHH
T ss_pred CcchhhhhhhhcCCEEEEecccCCCCCc--e-EEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHH
Confidence 222211 257899999999865433 4 888888888777665422111111111112222222222233556677
Q ss_pred HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccC
Q 013210 305 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
++.++++++.+.|+..+.++..|. .+.++++.++ ..+.+.|... +| +.+ .+
T Consensus 272 ~~~~~~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~-----~~~~~~l~~~--~g-i~v-~~- 322 (359)
T 1svv_A 272 HSNKMAAILKAGLEACGIRLAWPS-------------------ASNQLFPILE-----NTMIAELNND--FD-MYT-VE- 322 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCCBSSCC-------------------SSSEECBEEE-----HHHHHHHTTT--EE-CEE-EE-
T ss_pred HHHHHHHHHHHHhccCCeEEccCC-------------------ccceEEEEcC-----HHHHHHHHHh--cC-EEE-Ee-
Confidence 888999999999954444444332 3446777764 2566666552 24 233 11
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.. ...++.+|||++ ...+++.++.+.++|+++.
T Consensus 323 --------~~--------------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~ 355 (359)
T 1svv_A 323 --------PL--------------KDGTCIMRLCTS-WATEEKECHRFVEVLKRLV 355 (359)
T ss_dssp --------EE--------------TTTEEEEEEECC-TTCCHHHHHHHHHHHHHC-
T ss_pred --------cc--------------cCCCceEEEEcc-CcCCHHHHHHHHHHHHHHH
Confidence 00 012468999999 7778888888888887653
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-26 Score=224.98 Aligned_cols=281 Identities=12% Similarity=0.158 Sum_probs=191.7
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC------C-CCeEEEeCCCchhHHH-HHHhhcCcccCee--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS------S-GGHVVAARTLYGGTHA-LLTHFFPRACNIT-- 166 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~------~-gd~Vi~~~~~y~~~~~-~~~~~~~~~~g~~-- 166 (447)
..+...++++.+++++|.+.+++|+||++|+.++++++.. + +++|++.++.|++... .+. . .|.+
T Consensus 80 ~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~-~----~g~~~~ 154 (397)
T 2ord_A 80 WNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLT-A----TGQPKY 154 (397)
T ss_dssp EEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHH-H----SBCHHH
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhh-c----cCChhh
Confidence 4567899999999999999999999999999999988753 4 4789999999876544 332 1 2222
Q ss_pred ----------EEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCcc-c---cCHHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013210 167 ----------TTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLA-V---ANIPELSRLAHDKGVTVVVDNTFSPLVLS- 231 (447)
Q Consensus 167 ----------~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~-v---~~l~~I~~la~~~gi~livD~~~~~~~~~- 231 (447)
+..++.+|+++|++++ ++++++|++++|+||||. + .++++|.++|++||+++|+|++|+++...
T Consensus 155 ~~~~~p~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g 233 (397)
T 2ord_A 155 QKPFEPLVPGFEYFEFNNVEDLRRKM-SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG 233 (397)
T ss_dssp HGGGCSCCTTEEEECTTCHHHHHHHC-CTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred ccccCCCCCCeeEecCCCHHHHHHHh-hcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc
Confidence 6777778999999999 678999999999999999 4 46889999999999999999999655432
Q ss_pred -c---cCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHH
Q 013210 232 -P---ARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 232 -~---~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
+ ..++ .|++ |+||.++ +|.|+ |+++.+++++ .+..... .....++.+.+.++..++..+.. ....++
T Consensus 234 ~~~~~~~~~~~~d~~--s~sK~~~-~G~r~-G~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~ 306 (397)
T 2ord_A 234 KLFAYQKYGVVPDVL--TTAKGLG-GGVPI-GAVIVNERAN-VLEPGDH-GTTFGGNPLACRAGVTVIKELTK-EGFLEE 306 (397)
T ss_dssp SSSHHHHHTCCCSEE--EECGGGG-TTSCC-EEEEECSTTC-CCCTTSS-CCSSTTCHHHHHHHHHHHHHHTS-TTHHHH
T ss_pred cchhhhhhCCCCCee--eeccccC-CCcCe-EEEEEchHhc-ccCCCCc-CCCCCCCHHHHHHHHHHHHHHHh-CCHHHH
Confidence 1 1123 6766 6789999 68888 8888777765 4432111 11122222333333333332222 335667
Q ss_pred HHHHHHHHHHHHHhCC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013210 306 HCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
+.++++++.+.|++.+ ..+.. ..+ +.|.++++.++.......+.+.|... | +.+..|
T Consensus 307 ~~~~~~~l~~~L~~~~~~~~~~~----~~~-------------~~g~~~~~~~~~~~~~~~l~~~l~~~---g-i~v~~~ 365 (397)
T 2ord_A 307 VEEKGNYLMKKLQEMKEEYDVVA----DVR-------------GMGLMIGIQFREEVSNREVATKCFEN---K-LLVVPA 365 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEE----EEE-------------EETTEEEEEECTTSCHHHHHHHHHHT---T-EECEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCceE----EEE-------------EEeEEEEEEECChHHHHHHHHHHHHC---C-CEEccC
Confidence 7888888888887642 21100 000 24679999997532356677777652 3 333322
Q ss_pred CccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 384 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 384 ~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+|||++ ...+++.++.+.++|+++
T Consensus 366 ---------------------------~~~~iRis~~-~~~~~e~i~~~~~~l~~~ 393 (397)
T 2ord_A 366 ---------------------------GNNTIRFLPP-LTVEYGEIDLAVETLKKV 393 (397)
T ss_dssp ---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 1468999988 666667677766666554
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=219.35 Aligned_cols=214 Identities=16% Similarity=0.148 Sum_probs=155.4
Q ss_pred hHHHHHHHHHHHh---C-----CCeEEE--eCChHHHHHHHHHHh--cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeE
Q 013210 100 TVLNLSRQMAALE---G-----TEAAYC--TASGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITT 167 (447)
Q Consensus 100 ~~~~l~~~ia~l~---g-----~~~~~~--tsggt~A~~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~ 167 (447)
...++++.+|+++ + .+.+++ |+||++|++++++.+ +.+||+|+++.|.|+++...+. ..|.++
T Consensus 70 g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~ 144 (396)
T 2q7w_A 70 GIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN-----SAGLEV 144 (396)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH-----HTTCEE
T ss_pred CCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-----HcCCce
Confidence 3468999999987 2 456888 999999999998765 3689999999999999887763 257787
Q ss_pred EEeCC---C----CHHHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---
Q 013210 168 TFVDI---S----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--- 232 (447)
Q Consensus 168 ~~v~~---~----d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--- 232 (447)
..++. + |+++|++++.+ ++++++++++|+||||.+.+ +++|+++|++||+++|+|++|..+.+..
T Consensus 145 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~ 224 (396)
T 2q7w_A 145 REYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEED 224 (396)
T ss_dssp EEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHH
T ss_pred EEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccch
Confidence 77776 3 89999999833 24788889999999999986 5689999999999999999996654421
Q ss_pred ---cC-----CCCeEEEeCCCccccCCCCeeEEEEEc---ChH----HHHHHHHHhhhhhhhcC-CCccHHHHHHHHccC
Q 013210 233 ---AR-----LGADVVVHSISKFISGGADIIAGAVCG---PAN----LVNSMMDLHQGALMLLG-PTMNPKVAFELSERI 296 (447)
Q Consensus 233 ---~~-----~g~di~~~S~sK~~g~~g~~igG~l~~---~~~----~~~~l~~~~~~~~~~~g-~~~~~~~a~~~~~~~ 296 (447)
.. .+.++++.|+||.+|++|.|+ ||++. +++ +++.+..... . ...+ +.+.+.++..++...
T Consensus 225 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~~ 301 (396)
T 2q7w_A 225 AEGLRAFAAMHKELIVASSYSXNFGLYNERV-GACTLVAADSETVDRAFSQMKAAIR-A-NYSNPPAHGASVVATILSND 301 (396)
T ss_dssp THHHHHHHHHCSCEEEEEECTTTTTCGGGCC-EEEEEECSSHHHHHHHHHHHHHHHH-T-TTSSCCHHHHHHHHHHHTSH
T ss_pred hHHHHHHHhcCCcEEEEEecccccccccccc-ceEEEEcCCHHHHHHHHHHHHHHHh-h-ccCCCCcHHHHHHHHHhcCh
Confidence 11 146789999999999999998 88875 554 4444443222 1 1222 233333333333322
Q ss_pred -------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 297 -------PHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 297 -------~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
+++....+++.++++++.+.|++.+
T Consensus 302 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 333 (396)
T 2q7w_A 302 ALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG 333 (396)
T ss_dssp HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2334445667888999999998875
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=222.90 Aligned_cols=284 Identities=13% Similarity=0.160 Sum_probs=192.6
Q ss_pred CCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHH-HHHhhcCc--------cc
Q 013210 97 FNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHA-LLTHFFPR--------AC 163 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~-~~~~~~~~--------~~ 163 (447)
..+..+++++.++++++ .+.+++|+||++|+.++++++. .+|++|+++++.|++... .+. .... ..
T Consensus 85 ~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~-~~g~~~~~~~~~p~ 163 (395)
T 1vef_A 85 PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLS-VTWEPKYREPFLPL 163 (395)
T ss_dssp CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHH-TCCCHHHHGGGCSC
T ss_pred CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhh-hcCCcccccccCCC
Confidence 46778999999999994 5679999999999999998764 578999999999976543 331 1110 01
Q ss_pred CeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-------c
Q 013210 164 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------P 232 (447)
Q Consensus 164 g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-------~ 232 (447)
...+..++..|+++|++++ ++++++|++++++||||.+.| +++|.++|++||+++|+|++|+++... .
T Consensus 164 ~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~ 242 (395)
T 1vef_A 164 VEPVEFIPYNDVEALKRAV-DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH 242 (395)
T ss_dssp SSCEEEECTTCHHHHHHHC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred CCCeeEeCCCcHHHHHHHh-ccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhh
Confidence 1125566667999999999 678999999888999999988 999999999999999999999755321 1
Q ss_pred cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013210 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALI 312 (447)
Q Consensus 233 ~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~ 312 (447)
.....|++ |+||++++ |.++ |+++.++++++.+..... .....++.+.+.++..++..+.. ....+++.+++++
T Consensus 243 ~~~~~d~~--s~sK~~~~-g~~~-G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~ 316 (395)
T 1vef_A 243 FGIVPDIL--TLAKALGG-GVPL-GVAVMREEVARSMPKGGH-GTTFGGNPLAMAAGVAAIRYLER-TRLWERAAELGPW 316 (395)
T ss_dssp HTCCCSEE--EECGGGGT-TSSC-EEEEEEHHHHHTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-HTTHHHHHHHHHH
T ss_pred cCCCCCEE--EEcccccC-CCce-EEEEehHHHHhhhccCCc-CCCcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 22346766 78999997 7888 888888877665543111 11111122222222222222211 2245667888899
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccCccccccc
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~-~~~~~g~~~vs~G~~~s~~~~ 391 (447)
+.+.|++.+..+.. ..+ +.|.++++.++.. ...+.+.|. .. | +.+..+
T Consensus 317 l~~~l~~~~~~~~~----~~~-------------~~g~~~~~~~~~~--~~~l~~~l~~~~---g-i~v~~~-------- 365 (395)
T 1vef_A 317 FMEKLRAIPSPKIR----EVR-------------GMGLMVGLELKEK--AAPYIARLEKEH---R-VLALQA-------- 365 (395)
T ss_dssp HHHHHHTSCCTTEE----EEE-------------EETTEEEEEESSC--SHHHHHHHHHHH---C-EECEES--------
T ss_pred HHHHHHHhhcCceE----EEE-------------EEEEEEEEEEcCh--HHHHHHHHHHHC---C-eEEecC--------
Confidence 99999876531110 001 2466999999742 345666665 42 3 333321
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.++.+|||++ ...+++.++.+.++|+++
T Consensus 366 -------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 393 (395)
T 1vef_A 366 -------------------GPTVIRFLPP-LVIEKEDLERVVEAVRAV 393 (395)
T ss_dssp -------------------STTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred -------------------CCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 1478999999 777888888887777654
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=220.97 Aligned_cols=213 Identities=15% Similarity=0.118 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHh-C----CCeEEE--eCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 101 VLNLSRQMAALE-G----TEAAYC--TASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 101 ~~~l~~~ia~l~-g----~~~~~~--tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
..++++.+|+++ + .+.+++ |+||++|+.++++.+.. +||+|+++.|+|+++...+. ..|.++..++
T Consensus 71 ~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~ 145 (394)
T 2ay1_A 71 EPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMN-----FMGLPVQTYR 145 (394)
T ss_dssp CHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH-----HHTCCEEEEE
T ss_pred cHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCceEEEe
Confidence 468999999986 4 356888 99999999999987754 89999999999999887763 2566777776
Q ss_pred C---C----CHHHHHHhhccC--CceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------cc
Q 013210 172 I---S----DHEMVNSAIVQG--RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PA 233 (447)
Q Consensus 172 ~---~----d~~~l~~~i~~~--~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~ 233 (447)
. + |++++++++++. +++++++++|+||||.+++ +++|+++|+++|+++|+|++|..+.+. +.
T Consensus 146 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 225 (394)
T 2ay1_A 146 YFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGT 225 (394)
T ss_dssp CEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHH
T ss_pred cccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHH
Confidence 5 3 899999988432 4678888999999999986 558899999999999999999765442 11
Q ss_pred ----CC-CCeEEEeCCCccccCCCCeeEEEEEc---ChHHHHHHHH----HhhhhhhhcC-CCccHHHHHHHHccC----
Q 013210 234 ----RL-GADVVVHSISKFISGGADIIAGAVCG---PANLVNSMMD----LHQGALMLLG-PTMNPKVAFELSERI---- 296 (447)
Q Consensus 234 ----~~-g~di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~----~~~~~~~~~g-~~~~~~~a~~~~~~~---- 296 (447)
.. ..++++.|+||.+|++|.|+ ||++. ++++++.+.. ... . ...+ +.+.+.++..++...
T Consensus 226 ~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~~~l~~ 302 (394)
T 2ay1_A 226 RLIASRIPEVLIAASCSKNFGIYRERT-GCLLALCADAATRELAQGAMAFLNR-Q-TYSFPPFHGAKIVSTVLTTPELRA 302 (394)
T ss_dssp HHHHHHCSSEEEEEECTTTTTCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHH-T-TTSSCCCHHHHHHHHHHHSHHHHH
T ss_pred HHHhhcCCCEEEEEeccCCCcCcCCcc-ceEEEEeCCHHHHHHHHHHHHHHHh-h-hcCCCChHHHHHHHHHhcChHHHH
Confidence 11 34688999999999999999 88876 6665544322 211 1 1222 333343334344332
Q ss_pred ---CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 297 ---PHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 297 ---~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
+++....+++.++++++.+.|++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 330 (394)
T 2ay1_A 303 DWMAELEAVRSGMLRLREQLAGELRDLS 330 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2345566677888899999998753
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=219.40 Aligned_cols=286 Identities=14% Similarity=0.073 Sum_probs=187.8
Q ss_pred HHHHHHHHHHhC-------C-CeEEEeCChHHHHHHHHHHhcCCCC----eEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 102 LNLSRQMAALEG-------T-EAAYCTASGMSAISSVLMQLCSSGG----HVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 102 ~~l~~~ia~l~g-------~-~~~~~tsggt~A~~~al~~l~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
.++|+.+|++++ . +.+++|+|+++|+.+++++++++|| +|+++.|+|+++...+. ..|.++..
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~-----~~g~~~~~ 145 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETT-----YVRSGMYK 145 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHH-----TTCBTTEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHH-----HcCCeEEE
Confidence 689999999987 3 4799999999999999999999999 99999999999988773 24666555
Q ss_pred eCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCcc--CCCCeEEEeCCCcc
Q 013210 170 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPA--RLGADVVVHSISKF 247 (447)
Q Consensus 170 v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~--~~g~di~~~S~sK~ 247 (447)
++.+ .+. +..+++++|++++||||||.+++ +|++.++.+++++|+|++|..-...+. ..+.++++.|+||.
T Consensus 146 ~~~d-~~~----l~~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~SK~ 218 (391)
T 3bwn_A 146 WEGD-AWG----FDKKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKI 218 (391)
T ss_dssp EEEE-STT----CCCCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEHHHH
T ss_pred ecCC-HHH----cCCCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEechhh
Confidence 5443 222 22457899999999999999986 454422333499999999942111122 24688999999999
Q ss_pred ccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-----------CCcHHHHHHHHHHHHHHHHH
Q 013210 248 ISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-----------IPHLGLRMKEHCHRALIFAR 315 (447)
Q Consensus 248 ~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-----------~~~l~~~~~~~~~~~~~l~~ 315 (447)
+|++|.|+ ||++. ++++++.+...+... ....+.+.+.++..++.. .+++....+.+.++++.+.+
T Consensus 219 ~g~~GlRi-G~~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (391)
T 3bwn_A 219 TGHAGSRI-GWALVKDKEVAKKMVEYIIVN-SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLRE 296 (391)
T ss_dssp HSCGGGCE-EEEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccce-EEEEecCHHHHHHHHHHhccc-ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 89886 889988887765521 123333444444444432 24466667778999999999
Q ss_pred HHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccccccc
Q 013210 316 RMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 394 (447)
Q Consensus 316 ~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~ 394 (447)
.|++++. .+..|. ....++ ... .....|.++++.+++.+ .+...|.. .| +.+..|..+
T Consensus 297 ~L~~~~~~~~~~p~-~~~~~f--~~~---~~~~~g~~~~~~~~~~~---~~~~~l~~---~g-V~v~pg~~f-------- 355 (391)
T 3bwn_A 297 VVKESDAFTLPKYP-EAFCNY--FGK---SLESYPAFAWLGTKEET---DLVSELRR---HK-VMSRAGERC-------- 355 (391)
T ss_dssp HHHTCSSEECCCCC-CEEETT--TTE---EECCCCSEEEEEESSSC---CHHHHHHH---TT-EECEEGGGG--------
T ss_pred HHHhCCCcccccCC-cccccc--ccc---cCCCcceEEEecCCcHH---HHHHHHHH---CC-EEEccCCCC--------
Confidence 9998743 333221 000000 000 00023558899987422 23333433 23 465555221
Q ss_pred ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 395 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 395 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
|..++.+|||++ . .++.++.+.++|.++
T Consensus 356 --------------g~~~~~iRis~~-~--~~e~i~~~~~~L~~~ 383 (391)
T 3bwn_A 356 --------------GSDKKHVRVSML-S--REDVFNVFLERLANM 383 (391)
T ss_dssp --------------TCCTTEEEEESC-S--CHHHHHHHHHHHHSC
T ss_pred --------------CCCCCEEEEEec-C--CHHHHHHHHHHHHHH
Confidence 123578999999 5 455566666666554
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=216.47 Aligned_cols=162 Identities=18% Similarity=0.156 Sum_probs=133.7
Q ss_pred HHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHH
Q 013210 102 LNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMV 178 (447)
Q Consensus 102 ~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l 178 (447)
+.+++.+++++|+ +.+++|+||++|+.++++++ +||+|+++.++|+++...+. .... .|.++.++ .|+++|
T Consensus 61 ~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~-~g~~~~~v--~d~~~l 134 (374)
T 2aeu_A 61 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIER-SCKI-VNAKYFES--DKVGEI 134 (374)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHHH-TTCEEEEE--SCHHHH
T ss_pred HHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHHH-cCcEEEEe--CCHHHH
Confidence 5677777888898 77999999999999999987 89999999999887655432 2223 68888888 689999
Q ss_pred HHhhccCCceE-EEEEcCCCCCc-cccCHHHHHHHHHhcCCEEEEeCCCCCCC----CC--ccCCCCeEEEeCCCccccC
Q 013210 179 NSAIVQGRTKV-LYFESISNPTL-AVANIPELSRLAHDKGVTVVVDNTFSPLV----LS--PARLGADVVVHSISKFISG 250 (447)
Q Consensus 179 ~~~i~~~~t~l-V~i~~~~NptG-~v~~l~~I~~la~~~gi~livD~~~~~~~----~~--~~~~g~di~~~S~sK~~g~ 250 (447)
+++ ++++++ |++++|+||+| .+.++++|.++|++||+++|+|++|+.+. .. +..+++|+++.|+||++++
T Consensus 135 ~~~--~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g 212 (374)
T 2aeu_A 135 LNK--IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG 212 (374)
T ss_dssp HTT--CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred Hhc--CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC
Confidence 887 568999 99999999999 88899999999999999999999994332 11 3445789999999999875
Q ss_pred CCCeeEEEEEcChHHHHHHHHHhh
Q 013210 251 GADIIAGAVCGPANLVNSMMDLHQ 274 (447)
Q Consensus 251 ~g~~igG~l~~~~~~~~~l~~~~~ 274 (447)
.++ ||+++++++++.+...+.
T Consensus 213 --~~~-G~~~~~~~~~~~l~~~~~ 233 (374)
T 2aeu_A 213 --PRG-GLLAGKKELVDKIYIEGT 233 (374)
T ss_dssp --CSC-EEEEEEHHHHHHHHHHHH
T ss_pred --cce-EEEEECHHHHHHHHHhhc
Confidence 355 999999999988877654
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=215.30 Aligned_cols=214 Identities=13% Similarity=0.121 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHh-C-------CCeEEE--eCChHHHHHHHH--HHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 101 VLNLSRQMAALE-G-------TEAAYC--TASGMSAISSVL--MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 101 ~~~l~~~ia~l~-g-------~~~~~~--tsggt~A~~~al--~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
..++++.+|+++ + .+.+++ |+||++|+++++ ..++.+||+|+++.|+|+++...+. ..|.++.
T Consensus 75 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~ 149 (412)
T 1yaa_A 75 LPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFE-----NQGLKTA 149 (412)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHH-----TTTCCEE
T ss_pred cHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHH-----HcCceEE
Confidence 468999999887 3 467999 999999999984 3445789999999999999987763 2577777
Q ss_pred EeCC-------CCHHHHHHhhccC--CceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----
Q 013210 169 FVDI-------SDHEMVNSAIVQG--RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----- 231 (447)
Q Consensus 169 ~v~~-------~d~~~l~~~i~~~--~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~----- 231 (447)
.++. .|+++|++++++. .+.++++++|+||||.+.+ +++|+++|++||+++|+|++|..+.+.
T Consensus 150 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 229 (412)
T 1yaa_A 150 TYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKD 229 (412)
T ss_dssp EEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHH
T ss_pred EEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccch
Confidence 7765 1899999988432 2455566999999999986 567899999999999999999665432
Q ss_pred --cc-C---C-C---CeEEEeCCCccccCCCCeeEEEEE--c-----ChH----HHHHHHHHhhhhhhhcCCCccHHHHH
Q 013210 232 --PA-R---L-G---ADVVVHSISKFISGGADIIAGAVC--G-----PAN----LVNSMMDLHQGALMLLGPTMNPKVAF 290 (447)
Q Consensus 232 --~~-~---~-g---~di~~~S~sK~~g~~g~~igG~l~--~-----~~~----~~~~l~~~~~~~~~~~g~~~~~~~a~ 290 (447)
+. . . . .++++.|+||.+|++|.|+ ||++ + +++ +++.+....... ...++.+.+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glri-G~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~a~~ 307 (412)
T 1yaa_A 230 AYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERV-GCFHLALTKQAQNKTIKPAVTSQLAKIIRSE-VSNPPAYGAKIVA 307 (412)
T ss_dssp THHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCE-EEEEEECCSCTTHHHHHHHHHHHHHHHHHTT-TSSCCHHHHHHHH
T ss_pred hHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcc-eEEEEEecCCCCCHHHHHHHHHHHHHHHhhc-cCCCChHHHHHHH
Confidence 11 1 1 2 5789999999999889999 8887 6 555 666666533211 1122333333443
Q ss_pred HHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 291 ELSERI-------PHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 291 ~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
.++... +++....+++.++++++.+.|++++
T Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1yaa_A 308 KLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG 345 (412)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344332 2355566778889999999998765
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-25 Score=223.97 Aligned_cols=289 Identities=18% Similarity=0.153 Sum_probs=197.7
Q ss_pred chHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHh----cCCCC-----eEEEeCCCchhHHHHHHhhcCcccCeeEE
Q 013210 99 PTVLNLSRQMAALEGTEAA-YCTASGMSAISSVLMQL----CSSGG-----HVVAARTLYGGTHALLTHFFPRACNITTT 168 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l----~~~gd-----~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 168 (447)
....++++.+++++|.+.. ++|+||++|+.++++++ .++|| +|+++.+.|+++...+. ..|.+++
T Consensus 107 ~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~-----~~G~~vv 181 (474)
T 1wyu_B 107 RLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATAS-----MAGYQVR 181 (474)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHH-----HTTCEEE
T ss_pred HHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHH-----HCCCEEE
Confidence 4568899999999998764 57899999999877654 35777 99999999998887762 3688998
Q ss_pred EeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccc-cCHHHHHHHHHhcCCEEEEeCCCCCC---CCCccCCCCeE
Q 013210 169 FVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDNTFSPL---VLSPARLGADV 239 (447)
Q Consensus 169 ~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v-~~l~~I~~la~~~gi~livD~~~~~~---~~~~~~~g~di 239 (447)
.++.+ |+++|++++ +++|++|++++| ||+|.+ .++++|+++|++||+++|+|++|... ..++..+++|+
T Consensus 182 ~v~~~~~~~~d~~~L~~~i-~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di 259 (474)
T 1wyu_B 182 EIPSGPEGEVDLEALKREL-GPHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDV 259 (474)
T ss_dssp EECBCTTSSBCHHHHHHHC-STTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSE
T ss_pred EecCCCCCCcCHHHHHHhh-CCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcE
Confidence 88875 899999999 778999999998 689999 69999999999999999999999322 22344558999
Q ss_pred EEeCCCccccCC-C---CeeEEEEEcChHHHHHHHH-Hh--hh---------------hhhhcCCCccHHHHHHHHcc--
Q 013210 240 VVHSISKFISGG-A---DIIAGAVCGPANLVNSMMD-LH--QG---------------ALMLLGPTMNPKVAFELSER-- 295 (447)
Q Consensus 240 ~~~S~sK~~g~~-g---~~igG~l~~~~~~~~~l~~-~~--~~---------------~~~~~g~~~~~~~a~~~~~~-- 295 (447)
++.|+||+++++ | .++ |+++.++++++.+.. .. .+ .....++.....+++..+..
T Consensus 260 ~~~s~~K~~~~p~g~gG~~~-G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g 338 (474)
T 1wyu_B 260 VHLNLHKTFTVPHGGGGPGS-GPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG 338 (474)
T ss_dssp EECCTTTTTCCCCTTSCCCC-CCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCccccccCCCCCCCCe-EEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH
Confidence 999999999866 3 366 899988887665531 00 00 00011222223333333321
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013210 296 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 375 (447)
Q Consensus 296 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~ 375 (447)
.+.+.+..++..++++++.+.|++.+.++.+++ + ....+++.++.......+.+.|...
T Consensus 339 ~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~--------------~~~~~~~~~~~~~~~~~l~~~L~~~--- 397 (474)
T 1wyu_B 339 LEGLKKAAALAVLNARYLKELLKEKGYRVPYDG----P--------------SMHEFVAQPPEGFRALDLAKGLLEL--- 397 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCS----S--------------CCSCEEEBCSTTCCHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCC----C--------------cceEEEEEcCCCCCHHHHHHHHHHC---
Confidence 234556677788999999999988755543222 0 1101344443222355677777652
Q ss_pred ccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 376 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 376 g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
|+ .+. + ... + ....+.+|||++ ..++++.++.+.++|+++.
T Consensus 398 Gi-~~~-~----------~~~----~-------~~~~~~lRis~~-~~~t~e~id~~~~~L~~~~ 438 (474)
T 1wyu_B 398 GF-HPP-T----------VYF----P-------LIVKEALMVEPT-ETEAKETLEAFAEAMGALL 438 (474)
T ss_dssp TC-CCC-E----------ESC----S-------TTSTTCEEECCC-TTSCHHHHHHHHHHHHHHH
T ss_pred Cc-ccc-c----------ccc----c-------cccCCEEEEEee-cCCCHHHHHHHHHHHHHHH
Confidence 32 221 1 000 0 012478999999 7777777888888877653
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-24 Score=214.20 Aligned_cols=223 Identities=13% Similarity=0.091 Sum_probs=158.8
Q ss_pred CccccCCCCchHHHHHHHHHHHh-CC-------CeE--EEeCChHHHHHHHH---HHhcCCCCeEEEeCCCchhHHHHHH
Q 013210 90 FFIYSRHFNPTVLNLSRQMAALE-GT-------EAA--YCTASGMSAISSVL---MQLCSSGGHVVAARTLYGGTHALLT 156 (447)
Q Consensus 90 ~~~~~r~~~~~~~~l~~~ia~l~-g~-------~~~--~~tsggt~A~~~al---~~l~~~gd~Vi~~~~~y~~~~~~~~ 156 (447)
.+.|+. .....++++.+++++ |. +.+ ..|.+|++|+.++. +.++++||+|+++.|.|+++...+.
T Consensus 72 ~~~y~~--~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~ 149 (409)
T 4eu1_A 72 NMDYAP--VTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFA 149 (409)
T ss_dssp CCCCCC--TTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHH
T ss_pred cccCCC--CCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH
Confidence 344543 233368999999975 53 345 45999999998764 3456789999999999999987773
Q ss_pred hhcCcccCeeEEEeCCC-------CHHHHHHhhcc--CCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCC
Q 013210 157 HFFPRACNITTTFVDIS-------DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNT 224 (447)
Q Consensus 157 ~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~ 224 (447)
..|.++..++.. |+++|++++++ ++++++++++|+||||.+.+ +++|+++|++||+++|+|++
T Consensus 150 -----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~ 224 (409)
T 4eu1_A 150 -----KAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMA 224 (409)
T ss_dssp -----HTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred -----HcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecc
Confidence 268888888751 89999998842 35677778999999999997 45699999999999999999
Q ss_pred CCCCCCCc------------cCCCCeEEEeCCCccccCCCCeeEEEE---EcChH----HHHHHHHHhhhhhhhcCCCcc
Q 013210 225 FSPLVLSP------------ARLGADVVVHSISKFISGGADIIAGAV---CGPAN----LVNSMMDLHQGALMLLGPTMN 285 (447)
Q Consensus 225 ~~~~~~~~------------~~~g~di~~~S~sK~~g~~g~~igG~l---~~~~~----~~~~l~~~~~~~~~~~g~~~~ 285 (447)
|..+.+.. ......+++.|+||.+|++|.|+ ||+ +.+++ +++.+....... ....+...
T Consensus 225 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ri-G~~~~v~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 302 (409)
T 4eu1_A 225 YQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRC-GALHISTASAEEAKRLVSQLALLIRPM-YNNPPLYG 302 (409)
T ss_dssp CTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCC-EEEEEECSSHHHHHHHHHHHHHHHHHH-HSSCCHHH
T ss_pred ccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCc-eEEEEEeCCHHHHHHHHHHHHHHHhhh-cCCCChHH
Confidence 97665432 11245688999999999999999 885 56677 555555443311 12222333
Q ss_pred HHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 286 PKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 286 ~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
+.++..++.. .+.+....+++.++++++.+.|++.+
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 345 (409)
T 4eu1_A 303 AWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG 345 (409)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344333332 12345566778999999999999875
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=220.71 Aligned_cols=287 Identities=11% Similarity=0.033 Sum_probs=191.9
Q ss_pred HHHHHHHHHHhCCC-------eEEEeCChHHHHHHHHHHhcCC--------CC-----eEEEeCCCchhHHHHHHhhcCc
Q 013210 102 LNLSRQMAALEGTE-------AAYCTASGMSAISSVLMQLCSS--------GG-----HVVAARTLYGGTHALLTHFFPR 161 (447)
Q Consensus 102 ~~l~~~ia~l~g~~-------~~~~tsggt~A~~~al~~l~~~--------gd-----~Vi~~~~~y~~~~~~~~~~~~~ 161 (447)
+++++.+++++|.+ ..++|+||++|+.+++.++..+ |+ +|+++.+.|.++...+.
T Consensus 98 ~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~----- 172 (502)
T 3hbx_A 98 NRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFAR----- 172 (502)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHH-----
T ss_pred HHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHH-----
Confidence 45667789999987 3567999999999999887554 76 89999999999877763
Q ss_pred ccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc------CCEEEEeCCCCCCC
Q 013210 162 ACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNTFSPLV 229 (447)
Q Consensus 162 ~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~------gi~livD~~~~~~~ 229 (447)
..|+++++++.+ |+++|++++ +++|++|++++++||||.+.|+++|.++|+++ |+++|+|++|+.+.
T Consensus 173 ~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~ 251 (502)
T 3hbx_A 173 YFEVELKEVKLSEGYYVMDPQQAVDMV-DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFI 251 (502)
T ss_dssp HTTCEEEEECCBTTBCSCCHHHHHHHC-CTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred HcCceeEEEecCCCcCcCCHHHHHHHH-hhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchh
Confidence 368888888753 899999999 78899999999999999999999999999999 99999999995432
Q ss_pred ----CC-----ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh-------hhcCCCc--cHHHHHH
Q 013210 230 ----LS-----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL-------MLLGPTM--NPKVAFE 291 (447)
Q Consensus 230 ----~~-----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~-------~~~g~~~--~~~~a~~ 291 (447)
.. ....++|+++.|+||+++++.. +|++++.+++.+.........+. ...+... .....+.
T Consensus 252 ~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g-~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~ 330 (502)
T 3hbx_A 252 APFLYPELEWDFRLPLVKSINVSGHKYGLVYAG-IGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYY 330 (502)
T ss_dssp HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS-CEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHH
T ss_pred hhhhCcccccccCCCCceEEEECcccccCCCCC-eEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHH
Confidence 11 1123799999999999965543 43344555554422211111000 0001111 1222233
Q ss_pred HHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHH
Q 013210 292 LSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLM 366 (447)
Q Consensus 292 ~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~ 366 (447)
++. +.+.+.+++++..+++++|.+.|++++ +++..+. + ..++++|.+++. .....+.
T Consensus 331 al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~-----------------~~~~v~f~~~~~~~~~~~~l~ 392 (502)
T 3hbx_A 331 QLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKD-E-----------------GVPLVAFSLKDSSCHTEFEIS 392 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCS-S-----------------SSSEEEEEESSCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC-C-----------------CceEEEEEecCCCcCCHHHHH
Confidence 332 234567788889999999999999987 4665441 1 234899998742 1234677
Q ss_pred HHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 367 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 367 ~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+.|... | +.++.. ..|... .....+||+++ ...+.+.++.|.++|++
T Consensus 393 ~~L~~~---G-i~v~~~------~~p~~~--------------~~~~~lRisv~-~~~t~edid~li~~L~~ 439 (502)
T 3hbx_A 393 DMLRRY---G-WIVPAY------TMPPNA--------------QHITVLRVVIR-EDFSRTLAERLVIDIEK 439 (502)
T ss_dssp HHHHTT---T-CBCCEE------ECCTTC--------------TTCEEEEEECC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHhC---C-cEEeec------cCCccc--------------CCceEEEEEeC-CCCCHHHHHHHHHHHHH
Confidence 777753 3 233211 111110 12367999999 76555555555544443
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=219.52 Aligned_cols=278 Identities=11% Similarity=0.022 Sum_probs=187.4
Q ss_pred chHHHHHHHHHHHhCCC---eEEEeCCh-HHHHHHHHHHhcCC---CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 99 PTVLNLSRQMAALEGTE---AAYCTASG-MSAISSVLMQLCSS---GGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~---~~~~tsgg-t~A~~~al~~l~~~---gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
+..+++++.+++++|.+ .+++|+|+ ++|+.+++.+++.+ ||.|+++.++|.... .+ .. .| ++++++
T Consensus 48 ~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~~-~~----~~-~g-~~~~v~ 120 (360)
T 1w23_A 48 EVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALK-EA----KL-LG-ETHIAA 120 (360)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHH-HH----HT-TS-EEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHHH-HH----HH-hC-CeEEee
Confidence 35789999999999975 58999998 99999999988765 456676666655422 22 23 68 887776
Q ss_pred CC------CHHHHHH-hhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC--CCccCCCCeEEEe
Q 013210 172 IS------DHEMVNS-AIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVH 242 (447)
Q Consensus 172 ~~------d~~~l~~-~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~--~~~~~~g~di~~~ 242 (447)
.+ |+++|++ ++ +++|++|++++|+||||.+.| +| +++||+++|+|++|+... .+... .|+++.
T Consensus 121 ~~~~~~~~d~~~l~~~~i-~~~~k~v~~~~~~nptG~~~~--~i---~~~~~~~li~D~a~~~~~~~~~~~~--~di~~~ 192 (360)
T 1w23_A 121 STKANSYQSIPDFSEFQL-NENDAYLHITSNNTIYGTQYQ--NF---PEINHAPLIADMSSDILSRPLKVNQ--FGMIYA 192 (360)
T ss_dssp ECGGGTSCSCCCGGGCCC-CTTEEEEEEESEETTTTEECS--SC---CCCCSSCEEEECTTTTTSSCCCGGG--CSEEEE
T ss_pred cccccCcCCccchHhhcc-CCCCCEEEEeCCCCCcceecc--cc---cccCCceEEEechhhcCCCCcCccc--CCEEEE
Confidence 42 6678888 78 778999999999999999987 33 338999999999994332 22222 389999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhh--------hhcCCCccHH---HHHHHHccC--C-cHHHHHHHHHH
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL--------MLLGPTMNPK---VAFELSERI--P-HLGLRMKEHCH 308 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~--------~~~g~~~~~~---~a~~~~~~~--~-~l~~~~~~~~~ 308 (447)
|+||++|++| + |+++.++++++.+........ .....+.+.. ++..++..+ . .+....+++.+
T Consensus 193 s~sK~~~~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (360)
T 1w23_A 193 GAQKNLGPSG--V-TVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEE 269 (360)
T ss_dssp ETTTTTSCTT--C-EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred EcccccCCCC--c-EEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999776 5 889888887765543221000 0111122222 122222221 1 35566778899
Q ss_pred HHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcc
Q 013210 309 RALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 386 (447)
Q Consensus 309 ~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~ 386 (447)
+++++.+.|++++ . ....+ |. . ..+.+++|.+++......+++.|... | +.+..|.
T Consensus 270 ~~~~l~~~L~~~~~~~~~~~~-----~~----------~-~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~~~~~~-- 327 (360)
T 1w23_A 270 KAKIIYDTIDESNGFYVGHAE-----KG----------S-RSLMNVTFNLRNEELNQQFLAKAKEQ---G-FVGLNGH-- 327 (360)
T ss_dssp HHHHHHHHHHTTTTSSEESSC-----GG----------G-BCSSEEEEECSSHHHHHHHHHHHHHT---T-EESCBCC--
T ss_pred HHHHHHHHHHHccCcccccCC-----ch----------h-ccCcEEEEEcCCCccHHHHHHHHHHC---C-eeeecCC--
Confidence 9999999998876 2 22110 11 0 12349999998655567788887653 3 3333221
Q ss_pred ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 387 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 387 s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
. .++.||||++ ..++++.++.+.++|+++.
T Consensus 328 --------~---------------~~~~iRis~~-~~~~~~~i~~~~~~l~~~~ 357 (360)
T 1w23_A 328 --------R---------------SVGGCRASIY-NAVPIDACIALRELMIQFK 357 (360)
T ss_dssp --------T---------------TTCSEEEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred --------C---------------CCCeEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 0 1478999999 8888888999888887764
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=221.98 Aligned_cols=282 Identities=13% Similarity=0.104 Sum_probs=195.6
Q ss_pred HHHHHHHHHHhCCC----eE--EEeCChHHHHHHHHHHhcCCC--------CeEEEeCCCchhHHHHHHhhcCcccCeeE
Q 013210 102 LNLSRQMAALEGTE----AA--YCTASGMSAISSVLMQLCSSG--------GHVVAARTLYGGTHALLTHFFPRACNITT 167 (447)
Q Consensus 102 ~~l~~~ia~l~g~~----~~--~~tsggt~A~~~al~~l~~~g--------d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~ 167 (447)
+++++.+++++|.+ .+ ++|+||++|+.++++++..+| |+|+++.+.|+++...+. ..|.++
T Consensus 142 ~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~-----~~G~~v 216 (514)
T 3mad_A 142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQ-----YFGIKL 216 (514)
T ss_dssp HHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHH-----HHTCEE
T ss_pred HHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHH-----HcCCee
Confidence 34566678888876 56 999999999999999987665 899999999999887773 258888
Q ss_pred EEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC-------------
Q 013210 168 TFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV------------- 229 (447)
Q Consensus 168 ~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~------------- 229 (447)
+.++.+ |+++|++++ ++++++|++++|+||+|.+.|+++|.++|++||+++|+|++|+.+.
T Consensus 217 ~~v~~~~~~~~d~~~Le~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~ 295 (514)
T 3mad_A 217 VRTPLDADYRADVAAMREAI-TPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPP 295 (514)
T ss_dssp EEECBCTTSCBCHHHHHHHC-CTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCC
T ss_pred EEeeeCCCCCCCHHHHHHHh-ccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCc
Confidence 888876 999999999 7789999999999999999999999999999999999999996542
Q ss_pred CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh-hh-------hhhcCCCcc--HHHHHHHHcc--CC
Q 013210 230 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-GA-------LMLLGPTMN--PKVAFELSER--IP 297 (447)
Q Consensus 230 ~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-~~-------~~~~g~~~~--~~~a~~~~~~--~~ 297 (447)
++....++|+++.|+||+++++ .++ |+++.+++.......... .+ ....|.... ..++++++.. ..
T Consensus 296 ~~~~~~g~d~~~~s~~K~l~~~-~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~ 373 (514)
T 3mad_A 296 FDFRLEGVTSVSADTHKYGYGA-KGT-SVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE 373 (514)
T ss_dssp CSTTSTTCCEEEECTTTTTCCC-SSC-EEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEECchhccCCC-CCe-EEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH
Confidence 2233448999999999996533 345 777665544332211000 00 001222222 1223333322 23
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 376 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g 376 (447)
.+.+..++..++++++.+.|++.+ .++..+. .++++|...+.. ...+.+.|... |
T Consensus 374 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--------------------~~~~~~~~~~~~-~~~l~~~L~~~---G 429 (514)
T 3mad_A 374 GYLDATRRILQAADRLKAGVRAIPSLKILGDP--------------------LWVIAVASDELN-IYQVMEEMAGR---G 429 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--------------------SSEEEEECSSSC-HHHHHHHHHTT---T
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--------------------eEEEEEeCCCCC-HHHHHHHHHhc---C
Confidence 456677888999999999999873 4554332 238888775332 45677777752 3
Q ss_pred cccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC----CCCHHHHHHHHHHHHHHhhhc
Q 013210 377 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY----LGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 377 ~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~----~~~~~~~i~~l~~al~~~~~~ 442 (447)
+.+ .| . + .++.+|++++. .+++++.++.|.++++++...
T Consensus 430 -i~v-~g----------~--------------~-~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 430 -WRL-NG----------L--------------H-RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp -CBC-EE----------E--------------T-TTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred -CEe-cc----------C--------------C-CCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 222 11 0 0 13569999871 256677777777777776543
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.2e-24 Score=211.59 Aligned_cols=326 Identities=14% Similarity=0.134 Sum_probs=190.2
Q ss_pred cccccCCH-HHHHHhhcCCC--CCCCCCccccCCCCchHHH-HHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCe
Q 013210 66 ATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVLN-LSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGH 140 (447)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~-l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~ 140 (447)
..+..|.+ +.+.+.+...+ +++.+.|..+.......++ +++.+++++|.+.+ ++++||++|+..++++++++||+
T Consensus 41 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~ 120 (425)
T 3ecd_A 41 ENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDT 120 (425)
T ss_dssp CCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCE
T ss_pred cCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCE
Confidence 33443444 55555554333 3333333333333233344 45889999999887 45999999999999999999999
Q ss_pred EEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh
Q 013210 141 VVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 214 (447)
Q Consensus 141 Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~ 214 (447)
|+++.++|++.............++.+..++.+ |+++|++++.++++++|++++|+|| ...++++|.++|++
T Consensus 121 Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~ 198 (425)
T 3ecd_A 121 VLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADS 198 (425)
T ss_dssp EEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHH
T ss_pred EEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHH
Confidence 999999998732111111001023355555544 8999999994468999999998884 67899999999999
Q ss_pred cCCEEEEeCCC-CCCC-----CCccCCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHH
Q 013210 215 KGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPK 287 (447)
Q Consensus 215 ~gi~livD~~~-~~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~ 287 (447)
||+++|+|++| .++. ..+.. .+|+++.|+||++++ .+. |+++.+ +++.+.+....... ..++...+.
T Consensus 199 ~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g--~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 272 (425)
T 3ecd_A 199 VGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRG--PRG-GFVLTNDEEIAKKINSAVFPG--LQGGPLMHV 272 (425)
T ss_dssp HTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCC--CSC-EEEEESCHHHHHHHHHHHC-------CCCHHH
T ss_pred cCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccCC--CCc-EEEEeCCHHHHHHHHhhhCcc--ccCCccHHH
Confidence 99999999996 2222 12222 378999999999954 354 998887 56777666544321 122222222
Q ss_pred -HH-HHHHc-cC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHH
Q 013210 288 -VA-FELSE-RI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKA 362 (447)
Q Consensus 288 -~a-~~~~~-~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~ 362 (447)
.+ ..++. .. +.+....+++.++++++.+.|++.+..+..|. +.+.++++.++. ....
T Consensus 273 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~ 334 (425)
T 3ecd_A 273 IAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGG------------------TDNHLLLVDLRPKGLKG 334 (425)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------CSSSEEEEECGGGTCCH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCC------------------CCceEEEEEeCCCCCCH
Confidence 22 22222 22 34556778889999999999998777655332 235588888752 1124
Q ss_pred HHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC----HHHHHHHHHHHHHH
Q 013210 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT----LDQRWSQFEKALSR 438 (447)
Q Consensus 363 ~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~----~~~~i~~l~~al~~ 438 (447)
..+.+.|... | +.+..+.. |.... .....+.+|++++ ..+ +++.++.+.++|++
T Consensus 335 ~~~~~~l~~~---g-i~v~~~~~------p~~~~-----------~~~~~~~iRi~~~-~~~~~~~~~e~i~~~~~~l~~ 392 (425)
T 3ecd_A 335 AQVEQALERA---G-ITCNKNGI------PFDPE-----------KPTITSGIRLGTP-AGTTRGFGAAEFREVGRLILE 392 (425)
T ss_dssp HHHHHHHHHT---T-EECEECCC------TTCSS-----------CTTTCSEEEEESH-HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---C-CEeccccc------CCCCC-----------CCCCccceeccch-hheeccCCHHHHHHHHHHHHH
Confidence 4555566542 3 44443321 11100 0112467999965 422 36666666666554
Q ss_pred h
Q 013210 439 M 439 (447)
Q Consensus 439 ~ 439 (447)
+
T Consensus 393 ~ 393 (425)
T 3ecd_A 393 V 393 (425)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=217.81 Aligned_cols=290 Identities=11% Similarity=0.121 Sum_probs=189.3
Q ss_pred CCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc---C----CCCeEEEeCCCchhHHHHHHhhcC-------
Q 013210 97 FNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC---S----SGGHVVAARTLYGGTHALLTHFFP------- 160 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~---~----~gd~Vi~~~~~y~~~~~~~~~~~~------- 160 (447)
..+...++++.++++++ .+.++||+||++|++++++.+. + +|++|+++.+.|+++.........
T Consensus 84 ~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~ 163 (429)
T 1s0a_A 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHS 163 (429)
T ss_dssp ECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGG
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcc
Confidence 45667889999999994 5779999999999999998653 2 589999999999876443211100
Q ss_pred ----cccCeeEEEeC---------CCCHHHHHHhhcc--CCceEEEEEcC-CCCCccccC----HHHHHHHHHhcCCEEE
Q 013210 161 ----RACNITTTFVD---------ISDHEMVNSAIVQ--GRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVV 220 (447)
Q Consensus 161 ----~~~g~~~~~v~---------~~d~~~l~~~i~~--~~t~lV~i~~~-~NptG~v~~----l~~I~~la~~~gi~li 220 (447)
...+.....++ ..|+++|++++++ +++++|+++++ +||+|.+.+ +++|.++|++||+++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li 243 (429)
T 1s0a_A 164 LWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLI 243 (429)
T ss_dssp GGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEE
T ss_pred cccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 00123333332 1378999998832 57888888887 899998877 9999999999999999
Q ss_pred EeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHhh----hhhhhcCCCccHHH
Q 013210 221 VDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMNPKV 288 (447)
Q Consensus 221 vD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~----~~~~~~g~~~~~~~ 288 (447)
+||+|+++... ......|++ |+||.+++ | .++ |++++++++++.+..... ...+..++.+.+.+
T Consensus 244 ~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-G~~~i-G~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a 319 (429)
T 1s0a_A 244 ADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTG-GTMTL-SATLTTREVAETISNGEAGCFMHGPTFMGNPLACAA 319 (429)
T ss_dssp EECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-SSSCC-EEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHH
T ss_pred EeehhhCCcccchHHHhhhcCCCCCEE--EecccccC-CCccc-eEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHH
Confidence 99999654321 112345665 57899995 7 788 899999998887764210 01112223333333
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013210 289 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368 (447)
Q Consensus 289 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~ 368 (447)
+..++..+.. ....++..++++++.+.|++.+. .|.+...+ +.|.++++.++.......+.+.
T Consensus 320 ~~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~~~~~~-------------~~g~~~~~~~~~~~~~~~l~~~ 382 (429)
T 1s0a_A 320 ANASLAILES-GDWQQQVADIEVQLREQLAPARD---AEMVADVR-------------VLGAIGVVETTHPVNMAALQKF 382 (429)
T ss_dssp HHHHHHHHHT-CHHHHHHHHHHHHHHHHHGGGGG---CTTEEEEE-------------EETTEEEEEESSCBCHHHHHHH
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHhc---CCCEEEEE-------------EeeEEEEEEECCcccHHHHHHH
Confidence 3333332211 13456677888899999876421 11110000 2456899998742224566666
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
|... | +.++.. .+.||||++ ...+++.++.+.++|+++.
T Consensus 383 l~~~---G-i~v~~~----------------------------~~~iRis~~-~~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 383 FVEQ---G-VWIRPF----------------------------GKLIYLMPP-YIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp HHHT---T-EECCCB----------------------------TTEEEECCC-TTCCHHHHHHHHHHHHHHT
T ss_pred HHHC---C-CEEecc----------------------------CCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 6542 3 232210 267999999 7788888888888887653
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=211.42 Aligned_cols=290 Identities=16% Similarity=0.095 Sum_probs=194.2
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCe--EEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~--Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.++...++++.+|+++|.+..++++||++|+.+++++++.+||+ |+++.+.|....... ... ...|.++..++.+
T Consensus 46 ~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~-~~~-~~~g~~~~~v~~~~ 123 (359)
T 3pj0_A 46 NGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQD-GLK-ELQQITPLLLGTAN 123 (359)
T ss_dssp BSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHH-HHHCCEEEECSCTT
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcc-hHH-HhcCceEEecCCcC
Confidence 35778999999999999988888899999999999998888886 444545443332110 000 1147788888764
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCC-ccccCHHH---HHHHHHhcCCEEEEeCCCCCCC-----CCcc--CCCCeE
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPT-LAVANIPE---LSRLAHDKGVTVVVDNTFSPLV-----LSPA--RLGADV 239 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~Npt-G~v~~l~~---I~~la~~~gi~livD~~~~~~~-----~~~~--~~g~di 239 (447)
|+++|+++ .+++++|++++|+||+ |.+.|+++ |.++|++||+++|+|++|.... ..+. ..+.|+
T Consensus 124 ~~~d~~~l~~~--~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~ 201 (359)
T 3pj0_A 124 QLLTIDDIKSL--REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDS 201 (359)
T ss_dssp SCCCHHHHHTC--SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSE
T ss_pred CCcCHHHHHhc--cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCE
Confidence 89999886 5689999999999998 78887555 4999999999999999973221 1221 236789
Q ss_pred EEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCC-CccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013210 240 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP-TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 240 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~-~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~ 318 (447)
++.|+||++++++ ||++++++++++.++..+... ..+. ...+.++.. ...++...++++++.++++++.+.|+
T Consensus 202 ~~~s~sK~~~~~~---gg~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~a~-~~~l~~~~~~~~~~~~~~~~l~~~L~ 275 (359)
T 3pj0_A 202 VYVSFYKGIGGIA---GAILAGNDDFVQEAKIWKRRY--GGDLISLYPYILSA-DYYFEKRIGKMAEYFEAAKGLAERFN 275 (359)
T ss_dssp EEEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHT--TCCCSCCHHHHHHH-HHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCcc---eEEEECCHHHHHHHHHHHHHh--CCCcchhHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999999998763 488899999999887654411 1111 112222111 11222223456677888899999999
Q ss_pred hCC-Ceee-CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccCcccccccccc
Q 013210 319 KLG-LKVL-YPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 394 (447)
Q Consensus 319 ~~~-~~v~-~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~ 394 (447)
+++ .++. .|. .++++++.++. ......+.+.|... | +.+..|... .
T Consensus 276 ~~~g~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~~~l~~~---G-V~v~~g~~~------~- 325 (359)
T 3pj0_A 276 SCSGVKTVPEVP-------------------VSNMFHVYFENSADEIGAILTKIQDET---G-VGISGYLQE------K- 325 (359)
T ss_dssp TSTTEEEESSSC-------------------SSSEEEEEESSCHHHHHHHHHHHHHHH---C-EECCSCCEE------E-
T ss_pred hCCCceeeccCC-------------------cceEEEEEecCccchhHHHHHHHHHhc---C-cEecCCccc------c-
Confidence 874 4553 232 34578888863 23356777777653 3 455544211 0
Q ss_pred ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 395 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 395 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
....+++|++++ ........+++.++++++.+
T Consensus 326 --------------~~~~~~~r~~i~-~~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 326 --------------SADVCAFEVSVG-DAFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp --------------ETTEEEEEEECC-TTGGGSCHHHHHHHHHHHHH
T ss_pred --------------CCCceEEEEEec-CccccCCHHHHHHHHHHHHh
Confidence 012367999999 76555556677777766653
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=206.53 Aligned_cols=302 Identities=15% Similarity=0.111 Sum_probs=202.3
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-------cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
.+...++++.+|+++|.+.+++++||++|+++++.++ +++||+|+++.++|+++...+. ..|.+++++
T Consensus 33 ~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~-----~~g~~~~~~ 107 (390)
T 3b8x_A 33 GEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQ-----QYGLRVKFV 107 (390)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEE
T ss_pred ChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEE
Confidence 5778999999999999999999999999999999998 7789999999999999988773 268888888
Q ss_pred CCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCC--eEEE
Q 013210 171 DIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA--DVVV 241 (447)
Q Consensus 171 ~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~--di~~ 241 (447)
+.+ |+++|++++ ++++++|+++ |++|.+.|+++|.++|+++|+++|+|++|+ +...+...+|+ |+.+
T Consensus 108 ~~~~~~~~~d~~~l~~~i-~~~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~ 183 (390)
T 3b8x_A 108 DIDINTLNIDIESLKEAV-TDSTKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGT 183 (390)
T ss_dssp CBCTTTCSBCHHHHHHHC-CTTEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEE
T ss_pred ecCccccCcCHHHHHHHh-CcCCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEE
Confidence 764 899999999 7789999986 367888999999999999999999999994 44344444555 5555
Q ss_pred eCC--CccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhh-h------------------------hcCCC--ccHHHHHH
Q 013210 242 HSI--SKFISGGADIIAGAVCGPA-NLVNSMMDLHQGAL-M------------------------LLGPT--MNPKVAFE 291 (447)
Q Consensus 242 ~S~--sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~-~------------------------~~g~~--~~~~~a~~ 291 (447)
+|+ +|.+++ | .||+++.++ ++.+.+...+.+.. . ..|.. +....++.
T Consensus 184 ~s~~~~k~~~~-g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~ 260 (390)
T 3b8x_A 184 FSSFYSNHIAT-M--EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAI 260 (390)
T ss_dssp EECCTTSSSCS-S--SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHH
T ss_pred EEccCCCCCcc-C--CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHH
Confidence 443 343432 2 258888765 67776765543210 0 01211 34444444
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHH
Q 013210 292 LSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNY 368 (447)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~ 368 (447)
.+..++.+.+..++..++++++.+.|++++. ++..+. ... ...++++.++. ......+.+.
T Consensus 261 ~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~---------------~~~~~~i~~~~~~~~~~~~l~~~ 324 (390)
T 3b8x_A 261 GIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQET-GES---------------SWFGFSFIIKKDSGVIRKQLVEN 324 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCC-SBC---------------CCCEEEEEECTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCC-CCc---------------ccEEEEEEecCcCcccHHHHHHH
Confidence 4444566677778888999999999988743 443221 010 11246667762 1124567777
Q ss_pred hhcccccccccccccCccccccc-cccc--c---CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSC-SGSS--T---SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~-~a~~--~---~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
|... | +.++.....+.... |... . ...++..+.. ..+.||||++ ...++++++.+.++|
T Consensus 325 L~~~---g-I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~l~~~-~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 325 LNSA---G-IECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYL----DKNGLFVGNH-QIELFDEIDYLREVL 389 (390)
T ss_dssp HHHT---T-BCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHH----HHHEEEEECC-SSCCHHHHHHHHHHT
T ss_pred HHHC---C-CCeeeecCCchhhcchhhhcCCCCCcCCChHHHHH----hcCEEEeeCC-CCCCHHHHHHHHHhh
Confidence 7653 3 55555211111111 1110 0 1112211111 1367999999 999999999988775
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=219.13 Aligned_cols=290 Identities=14% Similarity=0.166 Sum_probs=187.9
Q ss_pred ccCCCCchHHHHHHHHHHHh--CC-CeEEEeCChHHHHHHHHHHh--cCCCCeEEEeCCCchhHHHHHHhhcCc------
Q 013210 93 YSRHFNPTVLNLSRQMAALE--GT-EAAYCTASGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPR------ 161 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~--g~-~~~~~tsggt~A~~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~------ 161 (447)
+.++..+...++++.+++++ +. +.++||+||++|+..+++.+ ..++++|++.++.|++...........
T Consensus 80 ~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 159 (439)
T 3dxv_A 80 ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADA 159 (439)
T ss_dssp SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC---------
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhc
Confidence 45566778899999999998 55 68999999999999999875 335678999999987765443211000
Q ss_pred ----ccCeeEEEeCCC----------CHHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEE
Q 013210 162 ----ACNITTTFVDIS----------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVV 220 (447)
Q Consensus 162 ----~~g~~~~~v~~~----------d~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~li 220 (447)
.....+..++.+ |+++|+++++ .+++++|++++++|++|.+.+ +++|.++|++||+++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li 239 (439)
T 3dxv_A 160 AKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVV 239 (439)
T ss_dssp ----CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEE
T ss_pred cccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 000112334443 5899999883 457899999999999999988 9999999999999999
Q ss_pred EeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHH
Q 013210 221 VDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS 293 (447)
Q Consensus 221 vD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~ 293 (447)
+||+|+++... ......|++ |+||.+++ |.|+ |++++++++++.+..... .... ++.+.+.++..++
T Consensus 240 ~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~ri-G~~~~~~~~~~~~~~~~~-~~t~-~~~~~~~aa~aal 313 (439)
T 3dxv_A 240 CDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GLPL-SAVIAPAEILDCASAFAM-QTLH-GNPISAAAGLAVL 313 (439)
T ss_dssp EECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSCC-EEEEEEHHHHTSCSSSSC-CTTT-TCHHHHHHHHHHH
T ss_pred EeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-Ccce-EEEEECHHHHhhhcCCCc-CCCc-ccHHHHHHHHHHH
Confidence 99999655321 112235655 78999995 8898 999999988876654322 1112 3333333333333
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe--------CCHHH
Q 013210 294 ERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM--------ETEEK 361 (447)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l--------~~~~~ 361 (447)
..++. ....+++.++.+++.+.|++. +.....+ +.|.++++.+ +....
T Consensus 314 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~ 373 (439)
T 3dxv_A 314 ETIDR-DDLPAMAERKGRLLRDGLSELAKRHPLIGDIR-------------------GRGLACGMELVCDRQSREPARAE 373 (439)
T ss_dssp HHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEEEEETTTTEECHHH
T ss_pred HHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------EEEEEEEEEEecCccccCCCHHH
Confidence 32211 223455666666666666543 3211111 3577999988 44555
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
...+.+.|... | +.+..| +...+.+||+++ ...+++.++.+.++|++
T Consensus 374 ~~~~~~~l~~~---G-v~v~~~-------------------------~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~ 420 (439)
T 3dxv_A 374 TAKLIYRAYQL---G-LVVYYV-------------------------GMNGNVLEFTPP-LTITETDIHKALDLLDR 420 (439)
T ss_dssp HHHHHHHHHHH---T-EECEEE-------------------------STTSCEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---C-cEEeec-------------------------CCCCCEEEEECC-CCCCHHHHHHHHHHHHH
Confidence 67777777652 3 333322 112478999987 65555555554444443
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=216.34 Aligned_cols=324 Identities=10% Similarity=0.036 Sum_probs=205.8
Q ss_pred ccccccccCCH-HHHHHhhcCCCCCCCC--CccccCC--------CCchHHHHHHHHHHHhCCCe-EEEeCChH-HHHHH
Q 013210 63 EASATFTVMEP-ETMRRMFAGELGPDRD--FFIYSRH--------FNPTVLNLSRQMAALEGTEA-AYCTASGM-SAISS 129 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~~~~~~--~~~~~r~--------~~~~~~~l~~~ia~l~g~~~-~~~tsggt-~A~~~ 129 (447)
++++|+..+.+ +.+....-..+.++.+ .+.+... .....+++++.+|+++|++. ++||+||| .++.+
T Consensus 86 ~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~ 165 (456)
T 2z67_A 86 SVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISL 165 (456)
T ss_dssp CEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHH
T ss_pred ccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHH
Confidence 45666666665 5555432222333322 2222211 22345679999999999865 89999999 56665
Q ss_pred HHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC---C-----CHHHHHHhh-c---cCCceEEEEEcC
Q 013210 130 VLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S-----DHEMVNSAI-V---QGRTKVLYFESI 195 (447)
Q Consensus 130 al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~---~-----d~~~l~~~i-~---~~~t~lV~i~~~ 195 (447)
++.++.. +|+.|+++.++|+++...+. ..|++++.++. + |+++|++++ . +.++.+|+++++
T Consensus 166 al~~~~~~~~~~~vi~~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~ 240 (456)
T 2z67_A 166 CLSAARKKYGSNVVIYPYASHKSPIKAVS-----FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLT 240 (456)
T ss_dssp HHHHHHHHHCCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred HHHHHHHhcCCCEEEEECCCcHHHHHHHH-----HcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 6666543 67789999999999877663 25888877764 2 899999998 3 247888889999
Q ss_pred CCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC--Ccc---CC--CCeEEEeCCCccccCCCCeeEEEEEc-ChHHHH
Q 013210 196 SNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPA---RL--GADVVVHSISKFISGGADIIAGAVCG-PANLVN 267 (447)
Q Consensus 196 ~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~--~~~---~~--g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~ 267 (447)
|||+|.+.|+++|.++|+++|+++|+|++|+.... .+. .+ ++|+++.|+||++++| .++ |+++. ++++++
T Consensus 241 nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p-~g~-G~l~~~~~~~~~ 318 (456)
T 2z67_A 241 FFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP-IGG-GLVYSTDAEFIK 318 (456)
T ss_dssp CCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCC-SSC-EEEEESCHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCC-CCe-EEEEEcCHHHHh
Confidence 99999999999999999999999999999854322 111 12 7999999999986644 235 88877 577777
Q ss_pred HHHHHhhhhhhhcCCC--ccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHH
Q 013210 268 SMMDLHQGALMLLGPT--MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLK 339 (447)
Q Consensus 268 ~l~~~~~~~~~~~g~~--~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~ 339 (447)
.+.... .|.. .....++.++. ....+.+..++..++++++.+.|++. +..+..|.
T Consensus 319 ~l~~~~------~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~----------- 381 (456)
T 2z67_A 319 EISLSY------PGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE----------- 381 (456)
T ss_dssp HHHTTS------CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-----------
T ss_pred hcCcCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-----------
Confidence 664321 1221 11222222222 22345667788899999999999886 44433221
Q ss_pred HHhccCCCcCcEEEEEe--CCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 013210 340 SMANKEYGFGGLLCLDM--ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 417 (447)
Q Consensus 340 ~~~~~~~g~g~~~~~~l--~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRi 417 (447)
++++|.+ ++. ...+.+.|... |+..+..........-..|. -...+.||+
T Consensus 382 ----------~~v~~~~~~~~~--~~~l~~~L~~~---gi~~~rv~~~~g~f~G~~~~-------------~~~~~~vr~ 433 (456)
T 2z67_A 382 ----------SPIASCISVNSD--PVEIAAKLYNL---RVTGPRGIKKTDHFGNCYLG-------------TYTHDYIVM 433 (456)
T ss_dssp ----------CSSEEEEECSSC--HHHHHHHHHHT---TEESCEEECTTCHHHHTCSS-------------CCSCCEEEE
T ss_pred ----------CeEEEEEecccH--HHHHHHHHHHc---CCCcceEEeecCcccccccc-------------ccCcchhhh
Confidence 2666776 442 23455555532 21111110000000000000 012478999
Q ss_pred EeCCCCCHHHHHHHHHHHHHHh
Q 013210 418 SVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 418 S~g~~~~~~~~i~~l~~al~~~ 439 (447)
|++ ..+++++++.+.++|+++
T Consensus 434 s~~-~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 434 NAA-IGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp ECC-TTCCHHHHHHHHHHHHTC
T ss_pred hhh-cCCCHHHHHHHHHHHHHH
Confidence 999 889999999999988764
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-24 Score=213.07 Aligned_cols=244 Identities=17% Similarity=0.144 Sum_probs=159.1
Q ss_pred HHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-----CCHH
Q 013210 103 NLSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHE 176 (447)
Q Consensus 103 ~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~ 176 (447)
.+++.+++++|.+.. +++++|++|+.+++++++++||+|+++.++|+++............+..+..++. .|++
T Consensus 75 ~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 154 (417)
T 3n0l_A 75 LAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYE 154 (417)
T ss_dssp HHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHH
T ss_pred HHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHH
Confidence 455689999998775 6677789999999999999999999999999876542211110112444555554 3899
Q ss_pred HHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCC-----CccCCCCeEEEeCCCccccC
Q 013210 177 MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL-----SPARLGADVVVHSISKFISG 250 (447)
Q Consensus 177 ~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~-----~~~~~g~di~~~S~sK~~g~ 250 (447)
+|++++.++++++|++++++| |.+.|+++|.++|++||+++|+|++| .+..+ .+.. ++|+++.|+||++++
T Consensus 155 ~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g 231 (417)
T 3n0l_A 155 KVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLRG 231 (417)
T ss_dssp HHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTCS
T ss_pred HHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccCC
Confidence 999999436899999888776 88999999999999999999999997 22221 1111 479999999999953
Q ss_pred CCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHHHHHH-HHcc-C-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013210 251 GADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFE-LSER-I-PHLGLRMKEHCHRALIFARRMKKLGLKVLY 326 (447)
Q Consensus 251 ~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~-~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~ 326 (447)
.+ ||+++++ +++++.+........ ..+......++.. ++.. . +.+....++..++++++.+.|++.+..+..
T Consensus 232 --~~-~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 307 (417)
T 3n0l_A 232 --PR-GGIIMTNDEELAKKINSAIFPGI-QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVS 307 (417)
T ss_dssp --CS-CEEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGG
T ss_pred --CC-eeEEEECCHHHHHHHhhhhCCcc-cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceecc
Confidence 45 4999887 788888876544221 1122222222222 2222 2 345667778888999999999887665543
Q ss_pred CCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhc
Q 013210 327 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQN 371 (447)
Q Consensus 327 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~ 371 (447)
++ ..+.++++.+... .....+...|..
T Consensus 308 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (417)
T 3n0l_A 308 DG------------------TDNHLVLMSFLDREFSGKDADLALGN 335 (417)
T ss_dssp GS------------------CSSSEEEEECTTSSSCHHHHHHHHHH
T ss_pred CC------------------CCceEEEEEcccCCCCHHHHHHHHHH
Confidence 21 1344788887521 123445555554
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-27 Score=234.70 Aligned_cols=213 Identities=14% Similarity=0.051 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 101 VLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 101 ~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
..++++.+++++ | .+.+++|+||++|+.+++++++++||+|+++.|.|+++...+. ..|.++..++.
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~ 142 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVR-----LNNRKLVSNSL 142 (392)
Confidence 456777777654 3 3569999999999999999999999999999999999876662 25666666654
Q ss_pred --------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------cc--
Q 013210 173 --------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PA-- 233 (447)
Q Consensus 173 --------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~-- 233 (447)
.|+++|+++++++++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+.+.+. ..
T Consensus 143 ~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 222 (392)
T 3b1d_A 143 KEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTV 222 (392)
Confidence 26788888883367899999999999999986 889999999999999999999655432 11
Q ss_pred -C--CCCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHH
Q 013210 234 -R--LGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCH 308 (447)
Q Consensus 234 -~--~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~ 308 (447)
. .+.++++.|+||.+|++|.|+ ||+++++ ++++.+............+.+.+.++..++.. .+.+....+++.+
T Consensus 223 ~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 301 (392)
T 3b1d_A 223 SPDFKDFALVLSSATKTFNIAGTKN-SYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEE 301 (392)
Confidence 1 356799999999999899998 8888764 58887776554221112233444434333332 2334555666788
Q ss_pred HHHHHHHHHHh
Q 013210 309 RALIFARRMKK 319 (447)
Q Consensus 309 ~~~~l~~~L~~ 319 (447)
+++.+.+.|++
T Consensus 302 ~~~~l~~~l~~ 312 (392)
T 3b1d_A 302 NIQFAVEYFAQ 312 (392)
Confidence 88888888876
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=213.22 Aligned_cols=287 Identities=17% Similarity=0.131 Sum_probs=191.2
Q ss_pred HHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCe--eEEEeCC------CC
Q 013210 104 LSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFVDI------SD 174 (447)
Q Consensus 104 l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~~~~v~~------~d 174 (447)
+++.+++++|.+.. +++++|++|+.+++++++++||+|+++.++|+++.... ..+. ..|. ....++. .|
T Consensus 74 ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~-~~g~~~~~~~~~~~~~~~~~d 151 (407)
T 2dkj_A 74 AIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVN-FSGKLYKVVSYGVRPDTELID 151 (407)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTS-HHHHHSEEEEECCCTTTSSCC
T ss_pred HHHHHHHHhCCCcceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHH-hcCceEEEEecCCCcccCccC
Confidence 34599999998775 66778899999999999999999999999998874211 1111 1233 3444431 28
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCC-----CccCCCCeEEEeCCCccc
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVL-----SPARLGADVVVHSISKFI 248 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~-----~~~~~g~di~~~S~sK~~ 248 (447)
+++|++++++.++++|++++|+|| .+.|+++|.++|++||+++|+|++|+. +.. .+.. .+|+++.|+||++
T Consensus 152 ~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l 228 (407)
T 2dkj_A 152 LEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTHKTL 228 (407)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESSGGG
T ss_pred HHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEEEeccccC
Confidence 999999994347999999889997 778999999999999999999999944 321 1122 3799999999977
Q ss_pred cCCCCeeEEEEEcC-hHHHHHHHHHhhhhhhhcCCCccHH-HHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013210 249 SGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPK-VAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKV 324 (447)
Q Consensus 249 g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~-~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v 324 (447)
+ |.+. |+++++ +++++.+......+. ..+...... ++..++.. ...+....+++.++++++.+.|++.+.++
T Consensus 229 ~--g~~~-G~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 304 (407)
T 2dkj_A 229 R--GPRG-GLILSNDPELGKRIDKLIFPGI-QGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRI 304 (407)
T ss_dssp C--CCSC-EEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred C--CCCc-eEEEECCHHHHHHHHhhhcccc-cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCcee
Confidence 6 4455 999998 799888876554221 112222222 22222322 23456677888999999999999886665
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHH
Q 013210 325 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403 (447)
Q Consensus 325 ~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~ 403 (447)
..+. +.|.++++.++.. .....+.+.|.. .| +.+..|.. +... ..
T Consensus 305 ~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~---~g-i~v~~~~~------~~~~----~~-- 350 (407)
T 2dkj_A 305 VTGG------------------TDNHLFLVDLRPKGLTGKEAEERLDA---VG-ITVNKNAI------PFDP----KP-- 350 (407)
T ss_dssp GGGS------------------CSSSEEEEECGGGTCCHHHHHHHHHH---TT-EECEECCC------TTCS----SC--
T ss_pred ecCC------------------CCceEEEEECcccCCCHHHHHHHHHH---cC-ceecCCcC------cccc----cc--
Confidence 4321 2466899998631 124566677764 23 45555531 1000 00
Q ss_pred HHHhcCCCCCeEEEEeC-------CCCCHHHHHHHHHHHHHH
Q 013210 404 EKALAGISAGLVRMSVG-------YLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 404 ~~~~~g~~~~~iRiS~g-------~~~~~~~~i~~l~~al~~ 438 (447)
...++.+|||++ ..++++..++.|.+++++
T Consensus 351 -----~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 351 -----PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp -----TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred -----ccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 012468999983 146677777777777665
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-24 Score=217.73 Aligned_cols=282 Identities=12% Similarity=0.078 Sum_probs=196.8
Q ss_pred HHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHhcC-----CC---CeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 102 LNLSRQMAALEGTE----AAYCTASGMSAISSVLMQLCS-----SG---GHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 102 ~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l~~-----~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
+++++.+++++|.+ .+++|+||++|+.+++++++. +| ++|+++.+.|+++...+. ..|.++++
T Consensus 110 ~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~-----~~G~~~~~ 184 (497)
T 3mc6_A 110 SEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY-----YFGMKLRH 184 (497)
T ss_dssp HHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH-----HSCCEEEE
T ss_pred HHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH-----HcCCeEEE
Confidence 45667788888876 599999999999999998764 45 899999999999887773 36888888
Q ss_pred eCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC--------------C
Q 013210 170 VDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--------------V 229 (447)
Q Consensus 170 v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~--------------~ 229 (447)
++.+ |+++|++++ ++++++|++++|+||+|.+.|+++|.++|++||+++|+|++|+.+ .
T Consensus 185 v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~ 263 (497)
T 3mc6_A 185 VELDPTTYQVDLGKVKKFI-NKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPL 263 (497)
T ss_dssp ECBCTTTCSBCTTTTGGGC-CSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCC
T ss_pred EecCcccCcCCHHHHHHHH-hhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcc
Confidence 8754 588999999 778999999999999999999999999999999999999999532 1
Q ss_pred CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh-hhh-------hhhcCCCcc--HHHHHHHHccC--C
Q 013210 230 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGA-------LMLLGPTMN--PKVAFELSERI--P 297 (447)
Q Consensus 230 ~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~-------~~~~g~~~~--~~~a~~~~~~~--~ 297 (447)
++....|+|+++.|+||+++++. ++ |+++.+++.+....... ... ....+.... ..++++++..+ .
T Consensus 264 ~~~~~~g~d~~~~s~~K~l~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~ 341 (497)
T 3mc6_A 264 LDFRVPGVTSISCDTHKYGFAPK-GS-SVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGEN 341 (497)
T ss_dssp CSTTSTTCCEEEEETTTTTCCCS-SC-EEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEECchhhcCCCC-Cc-eeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHH
Confidence 33344589999999999975332 35 78777665543321110 100 000011111 22233333222 3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhC--CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKL--GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 375 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~--~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~ 375 (447)
.+.+..++..++++++.+.|++. ++++..+. .+++++|..++. ....+.+.|...
T Consensus 342 ~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-------------------~~~~v~~~~~~~-~~~~l~~~L~~~--- 398 (497)
T 3mc6_A 342 GYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-------------------RYSVISFSSKTL-NIHELSDRLSKK--- 398 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-------------------CSSEEEEECTTT-THHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------------CeeEEEEeCCCC-CHHHHHHHHHhC---
Confidence 35567788889999999999984 45655432 345888887643 256777777753
Q ss_pred ccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC--CCCCHHHHHHHHHHHHHHhhh
Q 013210 376 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG--YLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 376 g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g--~~~~~~~~i~~l~~al~~~~~ 441 (447)
| +.++.+. .+..+|++++ ..+++++++++|.++++++..
T Consensus 399 G-i~v~~~~--------------------------~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 399 G-WHFNALQ--------------------------KPVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp T-CBCEECC--------------------------SSCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred C-EEEecCC--------------------------CCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3 3333221 1235788876 147788888888888887754
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-23 Score=208.04 Aligned_cols=210 Identities=19% Similarity=0.216 Sum_probs=160.5
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC----
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~---- 173 (447)
.+...++++.+|+++|.+.+++|+||++|+.++++++. +||+|+++.++|+++...+. ..|.++.+++.+
T Consensus 51 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~-----~~G~~~~~v~~~~~~~ 124 (424)
T 2po3_A 51 GPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALR-----WIGLTPVFADIDPDTG 124 (424)
T ss_dssp CHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTTTS
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHH-----HcCCEEEEEecCCCcC
Confidence 46778999999999999999999999999999999875 78999999999999987663 268888888754
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeCCC--c
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHSIS--K 246 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S~s--K 246 (447)
|+++|++++ ++++++|+++ ||+|.+.++++|.++|+++|+++|+|++|+ ++.++...++ .|+++.|+| |
T Consensus 125 ~~d~~~l~~~i-~~~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K 200 (424)
T 2po3_A 125 NLDPDQVAAAV-TPRTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATK 200 (424)
T ss_dssp SBCHHHHGGGC-CTTEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTS
T ss_pred CcCHHHHHHhh-CcCCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCC
Confidence 899999999 6789999874 489999999999999999999999999996 4544322222 589999998 6
Q ss_pred cccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhh------hcC--CCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013210 247 FISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L 317 (447)
.+++ .++ |+++.+ +++++.+......... ..| ..+.+..+...+..++.+....++..++++++.+.|
T Consensus 201 ~l~~--~~~-G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L 277 (424)
T 2po3_A 201 AVNA--FEG-GAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHL 277 (424)
T ss_dssp SSCC--SSC-EEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccC--CCC-eEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6654 565 999888 7888888765442110 011 123445454444444445556666777778888888
Q ss_pred HhC
Q 013210 318 KKL 320 (447)
Q Consensus 318 ~~~ 320 (447)
+++
T Consensus 278 ~~~ 280 (424)
T 2po3_A 278 ADL 280 (424)
T ss_dssp CSC
T ss_pred ccC
Confidence 766
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-24 Score=215.97 Aligned_cols=291 Identities=14% Similarity=0.115 Sum_probs=173.6
Q ss_pred ccccccccCCH-HHHHHhhcCCC--CCCCCCccccCCCCchHH-HHHHHHHHHhCCCe-----EEEeCChHHHHHHHHHH
Q 013210 63 EASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVL-NLSRQMAALEGTEA-----AYCTASGMSAISSVLMQ 133 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~-~l~~~ia~l~g~~~-----~~~tsggt~A~~~al~~ 133 (447)
..|.+|+.+.+ ++|...+.+.| |+|++.|..|......++ .+++++++++|++. .++++|||+||.+++.+
T Consensus 60 ias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~a 139 (490)
T 2a7v_A 60 IASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp CTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHH
Confidence 35777776666 77777777766 677766655544333333 45599999999976 35677999999999999
Q ss_pred hcCCCCeEEEeCCCchhHHHHHH--h--hcCcccCe--eEEEeCC------CCHHHHHHhhccCCceEEEEEcCCCCCcc
Q 013210 134 LCSSGGHVVAARTLYGGTHALLT--H--FFPRACNI--TTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLA 201 (447)
Q Consensus 134 l~~~gd~Vi~~~~~y~~~~~~~~--~--~~~~~~g~--~~~~v~~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~ 201 (447)
++++||+|+++.+.|+++..... . .. ...|. .+..++. .|+++|+++++..++++|+++.++|| .
T Consensus 140 l~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i-~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~ 216 (490)
T 2a7v_A 140 LLQPHDRIMGLDLPDGGHLTHGYMSDVKRI-SATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--R 216 (490)
T ss_dssp HCCSCEECCC--------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--S
T ss_pred HcCCCCEecccCccccccccchhhhcchhH-HHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--C
Confidence 99999999999999876432110 0 00 11233 2333322 28999999884457899998888876 5
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCC-CCC-----CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChH-----------
Q 013210 202 VANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN----------- 264 (447)
Q Consensus 202 v~~l~~I~~la~~~gi~livD~~~-~~~-----~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~----------- 264 (447)
+.|+++|.++|++||+++|+|++| .++ ...+.. ++|+++.|+||.++++ + ||+++++++
T Consensus 217 ~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~aDiv~~S~hK~l~Gp--~-GG~i~~~~~~~~~~~~~~~~ 292 (490)
T 2a7v_A 217 LIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIVTTTTHKTLRGA--R-SGLIFYRKGVKAVDPKTGRE 292 (490)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCSC--S-CEEEEEECSEEEEETTTEEE
T ss_pred cccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-CCCEEEECCcccCccc--c-chheeeccchhcccccccch
Confidence 789999999999999999999997 222 123333 6899999999998654 2 588877653
Q ss_pred ----HHHHHHHHhhhhhhhcCCCccHHHHHH-HHcc-C-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHH
Q 013210 265 ----LVNSMMDLHQGALMLLGPTMNPKVAFE-LSER-I-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHEL 337 (447)
Q Consensus 265 ----~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~-~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l 337 (447)
+.+.++...... ...+..+...++.. ++.. . +.+.++.++..+++++|++.|++.++++..++.
T Consensus 293 ~~~~l~~~i~~~~~~g-~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t-------- 363 (490)
T 2a7v_A 293 IPYTFEDRINFAVFPS-LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGT-------- 363 (490)
T ss_dssp EECCCHHHHHHHHTTT-TCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC--------
T ss_pred hhHHHHHHHHHHhccc-CCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCC--------
Confidence 455555443211 12223333333322 2221 1 245667788899999999999998887653221
Q ss_pred HHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccc
Q 013210 338 LKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 338 ~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
...++++.+... .....+.+.|... | |.++.+
T Consensus 364 ----------~t~lv~vdl~~~g~~~~~~~~~L~~~---G-I~v~~~ 396 (490)
T 2a7v_A 364 ----------DNHLVLVDLRPKGLDGARAERVLELV---S-ITANKN 396 (490)
T ss_dssp ----------SSSEEEEECTTTTCCHHHHHHHHHHT---T-EECEEE
T ss_pred ----------CCeEEEEEeCCCCCCHHHHHHHHHhC---C-eEEecC
Confidence 123888887632 1234455555542 2 455544
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.9e-24 Score=211.71 Aligned_cols=292 Identities=13% Similarity=0.156 Sum_probs=185.1
Q ss_pred CCCchHHHHHHHHHHHh-C-C-CeEEEeCChHHHHHHHHH---HhcCCCCeEEEeCCCchhHHHHHHhhcCc------cc
Q 013210 96 HFNPTVLNLSRQMAALE-G-T-EAAYCTASGMSAISSVLM---QLCSSGGHVVAARTLYGGTHALLTHFFPR------AC 163 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~-g-~-~~~~~tsggt~A~~~al~---~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~------~~ 163 (447)
...+...++++.|++++ + . +.+++|+||++|+.++++ .+.++| +|++.+|.|++........... ..
T Consensus 81 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~ 159 (426)
T 1sff_A 81 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGM 159 (426)
T ss_dssp EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTS
T ss_pred cCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCcccccccc
Confidence 34567789999999999 5 4 679999999999999988 566666 8999999998765422122110 01
Q ss_pred Ce---eEEEeCCC----------CHHHHHHhhcc----CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEe
Q 013210 164 NI---TTTFVDIS----------DHEMVNSAIVQ----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 164 g~---~~~~v~~~----------d~~~l~~~i~~----~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD 222 (447)
+. .+..++.+ |+++|++++++ +++++|++++.+|+||.+.+ +++|.++|++||+++|+|
T Consensus 160 ~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~D 239 (426)
T 1sff_A 160 GLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIAD 239 (426)
T ss_dssp CCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 11 24445442 68899988842 56788888654333997777 999999999999999999
Q ss_pred CCCCCCCCC-----ccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc
Q 013210 223 NTFSPLVLS-----PARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER 295 (447)
Q Consensus 223 ~~~~~~~~~-----~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~ 295 (447)
|+|+++... ....+ +|++ |+||++++ |.|+ ||+++++++++.+..... .....++.+.+.++..++..
T Consensus 240 e~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-Glri-G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~aal~~ 314 (426)
T 1sff_A 240 EVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPL-AGVTGRAEVMDAVAPGGL-GGTYAGNPIACVAALEVLKV 314 (426)
T ss_dssp CTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCC-EEEEEEHHHHTTSCTTSB-CCSSSSCHHHHHHHHHHHHH
T ss_pred chhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCce-EEEEEcHHHHhhhccCCc-CcCCCCCHHHHHHHHHHHHH
Confidence 999765321 11223 5554 78999997 9999 999998888776643211 11122222333333322222
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------CHHHHHHHHH
Q 013210 296 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMN 367 (447)
Q Consensus 296 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~~~~~~~l~~ 367 (447)
+.. ....+++.++++++.+.|++.+.. .|.....+ +.|.++++.+. .......+.+
T Consensus 315 ~~~-~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~-------------~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (426)
T 1sff_A 315 FEQ-ENLLQKANDLGQKLKDGLLAIAEK--HPEIGDVR-------------GLGAMIAIELFEDGDHNKPDAKLTAEIVA 378 (426)
T ss_dssp HHH-TTHHHHHHHHHHHHHHHHHHHHHT--CTTEEEEE-------------EETTEEEEEEBGGGCTTSBCHHHHHHHHH
T ss_pred HHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEE-------------EEEEEEEEEEecCccccCCChHHHHHHHH
Confidence 111 124456677778888887663200 01000000 24679999994 2344667777
Q ss_pred HhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 368 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 368 ~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.|... | +.+..|+. .++.+|||++ ...+++.++.+.++|+++
T Consensus 379 ~l~~~---g-i~v~~~~~-------------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~ 420 (426)
T 1sff_A 379 RARDK---G-LILLSCGP-------------------------YYNVLRILVP-LTIEDAQIRQGLEIISQC 420 (426)
T ss_dssp HHHHT---T-EECEEEST-------------------------TSCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHC---C-cEEecCCC-------------------------CCCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence 77652 3 34443311 1478999998 666666676666666554
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-24 Score=213.09 Aligned_cols=281 Identities=16% Similarity=0.159 Sum_probs=185.8
Q ss_pred CCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcC-CCCeEEEeCCCchhHHHHHHhhcC------cc--
Q 013210 95 RHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFP------RA-- 162 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~-~gd~Vi~~~~~y~~~~~~~~~~~~------~~-- 162 (447)
++..+...++++++++++|. +.++||+||++|+.++++.+.. +|++|++..|.|++.......... ..
T Consensus 82 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~ 161 (419)
T 2eo5_A 82 DFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVG 161 (419)
T ss_dssp CSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSC
T ss_pred ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccC
Confidence 34566678999999999985 4699999999999999987643 389999999999865443321110 00
Q ss_pred -cCeeEEEeCCC---------------------CHHHHH-Hhhcc----CCceEEEEEcCCCCCccccC----HHHHHHH
Q 013210 163 -CNITTTFVDIS---------------------DHEMVN-SAIVQ----GRTKVLYFESISNPTLAVAN----IPELSRL 211 (447)
Q Consensus 163 -~g~~~~~v~~~---------------------d~~~l~-~~i~~----~~t~lV~i~~~~NptG~v~~----l~~I~~l 211 (447)
....+..++.+ |+++|+ +++++ +++++|+++++|||+|.+.+ +++|.++
T Consensus 162 ~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l 241 (419)
T 2eo5_A 162 PFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKL 241 (419)
T ss_dssp CCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHH
T ss_pred CCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHH
Confidence 11244555443 367888 88832 46778888777788998776 9999999
Q ss_pred HHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHhhhhhhhcCCC
Q 013210 212 AHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPT 283 (447)
Q Consensus 212 a~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~ 283 (447)
|++||+++|+||+|+++.... .....|++ |+||.+++ | .|+ |+++++++++ .+ .... ..+..++.
T Consensus 242 ~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~ri-G~~~~~~~~~-~~-~~~~-~~t~~~n~ 314 (419)
T 2eo5_A 242 AKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMPI-GATIFRKDLD-FK-PGMH-SNTFGGNA 314 (419)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCC-EEEEEEGGGC-CC--------CCCCCH
T ss_pred HHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-Cccce-EEEEEchHhh-cC-Cccc-CCCCCCCH
Confidence 999999999999996553211 12235555 68999995 8 999 8888888877 65 3111 11123333
Q ss_pred ccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHH
Q 013210 284 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKA 362 (447)
Q Consensus 284 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~ 362 (447)
+.+.++..++. .+.+..+++.++++++.+.|++. .... + +.|.++++.+. .....
T Consensus 315 ~~~~aa~aal~---~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~-------------------~~g~~~~i~~~~~~~~~ 370 (419)
T 2eo5_A 315 LACAIGSKVID---IVKDLLPHVNEIGKIFAEELQGL-ADDV-R-------------------GIGLAWGLEYNEKKVRD 370 (419)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTS-SSEE-E-------------------EETTEEEEECSCHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh-hhhe-E-------------------eeeEEEEEEEecCccHH
Confidence 33333333333 23335677888899999999765 2111 1 35678999984 32334
Q ss_pred HHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 363 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 363 ~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
. +.+.|... | +.++.+ + ++.||||++ ...+++.++.+.++|+++
T Consensus 371 ~-~~~~l~~~---G-v~v~~~-------------------------~--~~~lRis~~-~~~t~e~i~~~l~~l~~~ 414 (419)
T 2eo5_A 371 R-IIGESFKR---G-LLLLPA-------------------------G--RSAIRVIPP-LVISEEEAKQGLDILKKV 414 (419)
T ss_dssp H-HHHHHHHT---T-EECEEE-------------------------T--TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHC---C-CEEecC-------------------------C--CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 5 77777642 3 333322 1 368999998 777777777777777654
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=216.54 Aligned_cols=150 Identities=11% Similarity=0.224 Sum_probs=122.5
Q ss_pred CeEEEeCChHHHHHHHHHH-----hcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-------CCHHHHHHhh
Q 013210 115 EAAYCTASGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAI 182 (447)
Q Consensus 115 ~~~~~tsggt~A~~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i 182 (447)
+.+++|+|+++|+.+++++ ++++||+|+++.|.|+++..... +.. .|.++..++. .|+++|++++
T Consensus 166 ~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~--~~~-~g~~~~~v~~~~~~~~~~d~~~l~~~~ 242 (546)
T 2zy4_A 166 VNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPE--LAQ-YALEEVAINADPSLNWQYPDSELDKLK 242 (546)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHH--STT-SCCEEEEEECBGGGTTBCCHHHHGGGG
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHH--HcC-CCcEEEEEecCcccCCCCCHHHHHHhh
Confidence 5699999999999999987 47899999999999999887642 222 4677777764 2789998887
Q ss_pred ccCCceEEEEEcCCCCCccccC---HHHHHHHH--HhcCCEEEEeCCCCCCCCCc---cC--CCCeEEEeCCCccccCCC
Q 013210 183 VQGRTKVLYFESISNPTLAVAN---IPELSRLA--HDKGVTVVVDNTFSPLVLSP---AR--LGADVVVHSISKFISGGA 252 (447)
Q Consensus 183 ~~~~t~lV~i~~~~NptG~v~~---l~~I~~la--~~~gi~livD~~~~~~~~~~---~~--~g~di~~~S~sK~~g~~g 252 (447)
++++++|++++|+||||.+.+ +++|+++| +++|+++|+|++|..+...+ .. .+.++++.|+||.+|.+|
T Consensus 243 -~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G 321 (546)
T 2zy4_A 243 -DPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG 321 (546)
T ss_dssp -STTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG
T ss_pred -CCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC
Confidence 778999999999999999987 56678888 78999999999996554322 11 157899999999999999
Q ss_pred CeeEEEEEcChH-HHHHH
Q 013210 253 DIIAGAVCGPAN-LVNSM 269 (447)
Q Consensus 253 ~~igG~l~~~~~-~~~~l 269 (447)
.|+ ||++++++ +++.+
T Consensus 322 lRi-G~~~~~~~~l~~~l 338 (546)
T 2zy4_A 322 WRL-GVVAAHQQNVFDLA 338 (546)
T ss_dssp GCE-EEEEEESSCHHHHH
T ss_pred cce-EEEEECCHHHHHHH
Confidence 998 99988764 77666
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=213.55 Aligned_cols=289 Identities=13% Similarity=-0.015 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHhCCC-------eEEEeCChHHHHHHHHHHhcC--------CC-----CeEEEeCCCchhHHHHHHhhcC
Q 013210 101 VLNLSRQMAALEGTE-------AAYCTASGMSAISSVLMQLCS--------SG-----GHVVAARTLYGGTHALLTHFFP 160 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~-------~~~~tsggt~A~~~al~~l~~--------~g-----d~Vi~~~~~y~~~~~~~~~~~~ 160 (447)
.+++++.+++++|.+ .+++|+|||+|+.+++.++.. +| ++|+++. .|.++...+.
T Consensus 83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~---- 157 (452)
T 2dgk_A 83 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFAR---- 157 (452)
T ss_dssp HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHH----
T ss_pred HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHH----
Confidence 456677779999875 289999999999999988753 45 5899999 9988877662
Q ss_pred cccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc------CCEEEEeCCCCCC
Q 013210 161 RACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNTFSPL 228 (447)
Q Consensus 161 ~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~------gi~livD~~~~~~ 228 (447)
..|+++++++.+ |+++|++++ +++|++|++++|+||||.+.|+++|+++|+++ |+++|+|++|+.+
T Consensus 158 -~~G~~v~~v~~~~~~~~~d~~~l~~~i-~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~ 235 (452)
T 2dgk_A 158 -YWDVELREIPMRPGQLFMDPKRMIEAC-DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF 235 (452)
T ss_dssp -HTTCEEEECCCBTTBCSCCHHHHHHHC-CTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGG
T ss_pred -HcCceEEEEecCCCCCeECHHHHHHHH-hhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHH
Confidence 368889888764 899999999 77899999999999999999999999999995 9999999999543
Q ss_pred CC---C---cc---CCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHH-HHHHHHhhhhhh-------hcCCCc--cHHH
Q 013210 229 VL---S---PA---RLGADVVVHSISKFISGGADIIAGAVCGP-ANLV-NSMMDLHQGALM-------LLGPTM--NPKV 288 (447)
Q Consensus 229 ~~---~---~~---~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~-~~l~~~~~~~~~-------~~g~~~--~~~~ 288 (447)
.. . +. ..++|+++.|+||++.+ +.++ |+++.+ ++++ +.+.. ...+.. ..+... ....
T Consensus 236 ~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~-~~~~-G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~ 312 (452)
T 2dgk_A 236 LAPFVAPDIVWDFRLPRVKSISASGHKFGLA-PLGC-GWVIWRDEEALPQELVF-NVDYLGGQIGTFAINFSRPAGQVIA 312 (452)
T ss_dssp THHHHCTTCCCSTTSTTEEEEEEETTTTTCC-CSSC-EEEEESSGGGSCGGGCE-EECCTTCCEEECCSCCSCBCHHHHH
T ss_pred HHHhhCccchhhcCCCCCcEEEECcccccCC-CCCe-EEEEEcCHHHHHHHhcc-CccccCCCCCCcccCCCChhHHHHH
Confidence 21 1 11 22789999999997753 3345 777764 4333 33211 110100 011111 1222
Q ss_pred HHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH----H
Q 013210 289 AFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE----K 361 (447)
Q Consensus 289 a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~----~ 361 (447)
.++++. +.+.+.++.++..++++++.+.|++.+ +++..|+.+. ...++++|.+++.. .
T Consensus 313 ~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~---------------~~~~~v~f~~~~~~~~~~~ 377 (452)
T 2dgk_A 313 QYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPD---------------EGIPAVCFKLKDGEDPGYT 377 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTT---------------TBSSEEEEEECTTCCCSCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCC---------------CCeEEEEEEecCcccccCC
Confidence 222222 224466778888999999999999886 4665443110 13458999987421 2
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...+.+.|... | +.++.. ..|... ...+.+|||++ ..++++.++.|.++|+++
T Consensus 378 ~~~l~~~L~~~---G-i~v~~~------~~~~~~--------------~~~~~lRis~~-~~~t~e~id~li~~l~~~ 430 (452)
T 2dgk_A 378 LYDLSERLRLR---G-WQVPAF------TLGGEA--------------TDIVVMRIMCR-RGFEMDFAELLLEDYKAS 430 (452)
T ss_dssp HHHHHHHHHHT---T-CBCCEE------ECSTTC--------------TTCEEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---C-Ceeeee------eCCccc--------------CCeEEEEEEec-CCCCHHHHHHHHHHHHHH
Confidence 35677777652 2 222211 001100 01458999999 765566666666555443
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=207.86 Aligned_cols=312 Identities=10% Similarity=0.012 Sum_probs=209.9
Q ss_pred ccccccccCCH-HHHHHhhcCCCCCCCCCccccC---CCCchHHHHHHHHHHHhCCC---eEEE-eCChHHHHHHHHHHh
Q 013210 63 EASATFTVMEP-ETMRRMFAGELGPDRDFFIYSR---HFNPTVLNLSRQMAALEGTE---AAYC-TASGMSAISSVLMQL 134 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~l~~~ia~l~g~~---~~~~-tsggt~A~~~al~~l 134 (447)
..++|++.+++ ++|.+.+...++||+|.|..+. .....++++|+.+++++|++ .++| |+|||+|+++++.++
T Consensus 10 ~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~ 89 (361)
T 3m5u_A 10 SAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNL 89 (361)
T ss_dssp CSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhc
Confidence 45777777777 8888888877888888664433 34467889999999999983 4888 999999999999998
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHH
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 207 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~ 207 (447)
+ +||++......+.+.. .. ....+ .|+++++++.+ +++. + + +++|++|++.+..|.+|.+.|.
T Consensus 90 ~-~~~~~~~i~~~~~~~~-~~-~~a~~-~G~~v~~~~~~~~g~~~~~~~~--~-l-~~~t~lv~~~~~e~~tG~~~~~-- 159 (361)
T 3m5u_A 90 A-LNGVCEYANTGVWTKK-AI-KEAQI-LGVNVKTVASSEESNFDHIPRV--E-F-SDNADYAYICSNNTIYGTQYQN-- 159 (361)
T ss_dssp C-CSSCEEEEECSHHHHH-HH-HHHHH-TTCCEEEEEECTTTTSCSCCCC--C-C-CTTSSEEEEESEETTTTEECSS--
T ss_pred C-CCCeEEEEeCCHHHHH-HH-HHHHH-cCCceEEEecccCcCCCcCChh--h-c-CCCCCEEEEeCCCCCcceeCCc--
Confidence 8 7876522222222222 11 22233 57777776543 2344 3 7 7889999998888888999762
Q ss_pred HHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH-H-------hh--h
Q 013210 208 LSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-L-------HQ--G 275 (447)
Q Consensus 208 I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-~-------~~--~ 275 (447)
+++ +|+++|+|.+| +..+++.. ..|+++.|.||++|++| + |+++.++++++.+.. . .. .
T Consensus 160 ---i~~-~~~~~~vD~~q~~g~~~id~~--~~d~~~~s~~K~~gp~G--~-g~l~~~~~~~~~~~~~~~p~~~~~~~~~~ 230 (361)
T 3m5u_A 160 ---YPK-TKTPLIVDASSDFFSRKVDFS--NIALFYGGVQKNAGISG--L-SCIFIRKDMLERSKNKQIPSMLNYLTHAE 230 (361)
T ss_dssp ---CCC-CSSCEEEECGGGTTSSCCCCT--TEEEEEEETTTTSSCTT--C-EEEEEEHHHHHHHHTCCCCGGGCHHHHHH
T ss_pred ---ccc-cCCEEEEEcccccCCCCCCcc--cCCEEEEechhccCCCc--c-EEEEEcHHHHhhhcCCCCCceeehHHHhh
Confidence 344 49999999998 55666665 37999999999999888 4 889988888776643 1 00 0
Q ss_pred hhhhcCCCccHHH--H-HHHHccC--C-cHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhccCCC
Q 013210 276 ALMLLGPTMNPKV--A-FELSERI--P-HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 276 ~~~~~g~~~~~~~--a-~~~~~~~--~-~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
.....+ +++... + ..++..+ . .+....++..++++++.+.|++++ . ....+... .
T Consensus 231 ~~~~~~-Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~----------------r 293 (361)
T 3m5u_A 231 NQSLFN-TPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKD----------------R 293 (361)
T ss_dssp TTTCSS-CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGG----------------B
T ss_pred cCCCCC-CccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHH----------------c
Confidence 011122 222221 1 1122211 2 366677788999999999999887 3 33221100 1
Q ss_pred cCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH
Q 013210 348 FGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 425 (447)
Q Consensus 348 ~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~ 425 (447)
..++++|.+++ ..+ ..+...|... | +.+..|.. ..+.+|+|++ ..++
T Consensus 294 s~~ivsf~~~~~~~~~-~~~~~~L~~~---g-I~~~~g~~-------------------------~~g~iRiS~~-~~~t 342 (361)
T 3m5u_A 294 SLMNVSFNIAKNKDLE-PLFVKEAEEA---G-MIGLKGHR-------------------------ILGGIRASIY-NALN 342 (361)
T ss_dssp CSSEEEEEESSCTTHH-HHHHHHHHHT---T-EECCBCCT-------------------------TTCSEEEECC-TTSC
T ss_pred CCeEEEEECCCchhhh-HHHHHHHHHC---C-CEEecCCC-------------------------ccCeEEEEcc-CCCC
Confidence 23599999985 122 3566777653 3 44444411 0145999999 9999
Q ss_pred HHHHHHHHHHHHHhhh
Q 013210 426 DQRWSQFEKALSRMQD 441 (447)
Q Consensus 426 ~~~i~~l~~al~~~~~ 441 (447)
+++|+.|.++|+++.+
T Consensus 343 ~edId~l~~al~~~~~ 358 (361)
T 3m5u_A 343 LDQVKTLCEFMKEFQG 358 (361)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-24 Score=217.98 Aligned_cols=323 Identities=16% Similarity=0.163 Sum_probs=199.0
Q ss_pred ccccccccCCH-HHHHHhhcCCC--CCCCCCccccC--CCCchHHHHHHHHHHHhCCCe-----EEEeCChHHHHHHHHH
Q 013210 63 EASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSR--HFNPTVLNLSRQMAALEGTEA-----AYCTASGMSAISSVLM 132 (447)
Q Consensus 63 ~~att~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r--~~~~~~~~l~~~ia~l~g~~~-----~~~tsggt~A~~~al~ 132 (447)
..+.+++.+.+ +.+...+...+ |+|.+.| |+. ......+.+++.+++++|++. .+++.+|++|+.+++.
T Consensus 50 ~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~-y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~ 128 (483)
T 1rv3_A 50 IASENFASRAVLEALGSCLNNKYSLGYPGQRY-YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYT 128 (483)
T ss_dssp CTTCCCCCHHHHHHHTSGGGTCCCCEETTEES-SSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHhccCcccCCCccc-cCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHH
Confidence 44555554444 56656665554 4443322 221 111223455689999999863 2555566699998899
Q ss_pred HhcCCCCeEEEeCCCchhHHHHHHhh---cCcccC--eeEEEeCC------CCHHHHHHhhccCCceEEEEEcCCCCCcc
Q 013210 133 QLCSSGGHVVAARTLYGGTHALLTHF---FPRACN--ITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLA 201 (447)
Q Consensus 133 ~l~~~gd~Vi~~~~~y~~~~~~~~~~---~~~~~g--~~~~~v~~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~ 201 (447)
+++++||+|++++++|+++....... .....| +.+..++. .|+++|++++..++|++|++ +++|++ .
T Consensus 129 all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~ 206 (483)
T 1rv3_A 129 ALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-R 206 (483)
T ss_dssp HHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-S
T ss_pred HhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-C
Confidence 99999999999999998875432100 001123 34444422 28999999993378999999 899988 8
Q ss_pred ccCHHHHHHHHHhcCCEEEEeCCCC-CCC-----CCccCCCCeEEEeCCCccccCCCCeeEEEEEcChH-----------
Q 013210 202 VANIPELSRLAHDKGVTVVVDNTFS-PLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN----------- 264 (447)
Q Consensus 202 v~~l~~I~~la~~~gi~livD~~~~-~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~----------- 264 (447)
+.|+++|.++|+++|+++|+|++|. ++. ..+.. ++|+++.|+||+++++ +. |+++.+++
T Consensus 207 ~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~div~~s~~K~l~Gp--rg-G~i~~~~~~~~~~~~~g~~ 282 (483)
T 1rv3_A 207 NLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVVTTTTHKTLRGC--RA-GMIFYRRGVRSVDPKTGKE 282 (483)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEEEEESSGGGCCC--SC-EEEEEECSBCC-------C
T ss_pred cCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCcEEEecCcccCCCC--Cc-eEEEEcchhhhhccccCcc
Confidence 9999999999999999999999983 221 12222 6899999999998643 44 88887654
Q ss_pred ----HHHHHHHHhhhhhhhcCCCc-cHHHHHH-HHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhH
Q 013210 265 ----LVNSMMDLHQGALMLLGPTM-NPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 336 (447)
Q Consensus 265 ----~~~~l~~~~~~~~~~~g~~~-~~~~a~~-~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~ 336 (447)
+.+.+....... ..|+.. ...++.. ++... ..+....+++.++++++.+.|++.++++..|+.
T Consensus 283 ~~y~~~~~~~~~~~~~--~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~------- 353 (483)
T 1rv3_A 283 ILYNLESLINSAVFPG--LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGS------- 353 (483)
T ss_dssp CBCCHHHHHHHHHTTT--TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC-------
T ss_pred hhhHHHHHhhhhcCCc--ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccCCC-------
Confidence 333343221111 123322 2222222 22221 246677788899999999999988777664431
Q ss_pred HHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccc----ccCccccccccccccCCCCCHHHHHhcCCC
Q 013210 337 LLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVS----LGYYETLMSCSGSSTSSELNAEEKALAGIS 411 (447)
Q Consensus 337 l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs----~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~ 411 (447)
...++++.+... .....+.+.|... | +.++ .|. .|. ..
T Consensus 354 -----------~~~~~~v~~~~~g~~~~~~~~~L~~~---g-I~v~~~~~pg~--------~~~--------------~~ 396 (483)
T 1rv3_A 354 -----------DNHLILVDLRSKGTDGGRAEKVLEAC---S-IACNKNTCPGD--------KSA--------------LR 396 (483)
T ss_dssp -----------SSSEEEEEGGGGTCCHHHHHHHHHHT---T-EECEEECCSSC--------SCT--------------TS
T ss_pred -----------CCceEEEeccCCCCCHHHHHHHHHhC---C-cEEecCCCCCC--------CcC--------------CC
Confidence 112566666411 1133444555432 2 4544 231 111 12
Q ss_pred CCeEEEEeCCCCCH----HHHHHHHHHHHHHh
Q 013210 412 AGLVRMSVGYLGTL----DQRWSQFEKALSRM 439 (447)
Q Consensus 412 ~~~iRiS~g~~~~~----~~~i~~l~~al~~~ 439 (447)
.+.||||++ ..++ ++.++.+.++|.++
T Consensus 397 ~~~iRis~~-~~~t~g~~~edi~~~~~~l~~~ 427 (483)
T 1rv3_A 397 PSGLRLGTP-ALTSRGLLEKDFQKVAHFIHRG 427 (483)
T ss_dssp CCEEEEECH-HHHHTTCCHHHHHHHHHHHHHH
T ss_pred CceEEeecC-CcccCCCCHHHHHHHHHHHHHH
Confidence 478999999 7555 66666666666544
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=206.02 Aligned_cols=221 Identities=13% Similarity=0.122 Sum_probs=156.8
Q ss_pred ccccCCCCchHHHHHHHHHHHh-C---C----C--eEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhh
Q 013210 91 FIYSRHFNPTVLNLSRQMAALE-G---T----E--AAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF 158 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~-g---~----~--~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~ 158 (447)
+.|+... -..++++.+++++ + . + .+++|+||++|+.++++.++. + |+|++++|.|+++...+.
T Consensus 66 ~~Y~~~~--G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~-- 140 (405)
T 3k7y_A 66 KPYLLGN--GTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIE-- 140 (405)
T ss_dssp CCCCTTS--SCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHH--
T ss_pred CCCCCCC--CcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHH--
Confidence 4555422 2257888888875 2 1 2 358999999999999998877 8 999999999999988773
Q ss_pred cCcccCeeEEEeCC-C------CHHHHHHhhcc-CCceEEEEEcC-CCCCccccC---HHHHHHHHHhcCCEEEEeCCCC
Q 013210 159 FPRACNITTTFVDI-S------DHEMVNSAIVQ-GRTKVLYFESI-SNPTLAVAN---IPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 159 ~~~~~g~~~~~v~~-~------d~~~l~~~i~~-~~t~lV~i~~~-~NptG~v~~---l~~I~~la~~~gi~livD~~~~ 226 (447)
..|.++..++. + |+++|++++.+ +++++|+++++ |||||.+.+ +++|+++|++||+++|+|++|.
T Consensus 141 ---~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~ 217 (405)
T 3k7y_A 141 ---SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ 217 (405)
T ss_dssp ---TTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCT
T ss_pred ---HcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcc
Confidence 36888887765 1 88999998843 45788888765 899999986 6678899999999999999997
Q ss_pred CCCCCc-----------cC-CCCeEEEeCCCccccCCCCeeEEEEE---cChHHHHHHHH----HhhhhhhhcCCCccHH
Q 013210 227 PLVLSP-----------AR-LGADVVVHSISKFISGGADIIAGAVC---GPANLVNSMMD----LHQGALMLLGPTMNPK 287 (447)
Q Consensus 227 ~~~~~~-----------~~-~g~di~~~S~sK~~g~~g~~igG~l~---~~~~~~~~l~~----~~~~~~~~~g~~~~~~ 287 (447)
.+.++. .. ....+++.|+||.|+.+|+|+ ||++ .++++++.+.. ... ......+...+.
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRi-G~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~ 295 (405)
T 3k7y_A 218 GFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERA-GALHIVCKNQEEKKIVFNNLCFIVR-KFYSSPVIHTNR 295 (405)
T ss_dssp TTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTE-EEEEEECSSHHHHHHHHHHHHHHHH-TTTSSCCHHHHH
T ss_pred cccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccc-eEEEEEeCCHHHHHHHHHHHHHHHh-cccCCCcHHHHH
Confidence 765431 01 146799999999999999999 8874 35666655532 211 111111222333
Q ss_pred HHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHH----hCC
Q 013210 288 VAFELSER-------IPHLGLRMKEHCHRALIFARRMK----KLG 321 (447)
Q Consensus 288 ~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~----~~~ 321 (447)
++..++.. .+++....+++.++++.+.+.|+ +++
T Consensus 296 ~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g 340 (405)
T 3k7y_A 296 ILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYN 340 (405)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 33333332 12233445668999999999998 765
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=209.14 Aligned_cols=279 Identities=15% Similarity=0.119 Sum_probs=167.3
Q ss_pred ccccCCH-HHHHHhhcCCC--CCCCCCccccCCCC-chHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeE
Q 013210 67 TFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFN-PTVLNLSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHV 141 (447)
Q Consensus 67 t~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~~~-~~~~~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~V 141 (447)
.+..|.+ +.+.+.+...+ ++|.+.|..+.... ...+.+++.+++++|.+.. +++++|++|+..++++++++||+|
T Consensus 40 n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v 119 (420)
T 3gbx_A 40 NYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTV 119 (420)
T ss_dssp CCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEE
T ss_pred CCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEE
Confidence 3334444 55555554444 55554443333322 3344566899999998764 447788999999999999999999
Q ss_pred EEeCCCchhHHHHHHhhcCcccCeeEEEeCC-----CCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcC
Q 013210 142 VAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 216 (447)
Q Consensus 142 i~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~g 216 (447)
+++.++|+++............+.....++. .|+++|+++++..++++|++++|+|| .+.|+++|.++|++||
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~ 197 (420)
T 3gbx_A 120 LGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIG 197 (420)
T ss_dssp EEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTT
T ss_pred EecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcC
Confidence 9999999874421111000001223222221 38999999994446899999888886 4789999999999999
Q ss_pred CEEEEeCCCC-CCC-----CCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh---HHHHHHHHHhhhhhhhcCCCccH-
Q 013210 217 VTVVVDNTFS-PLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA---NLVNSMMDLHQGALMLLGPTMNP- 286 (447)
Q Consensus 217 i~livD~~~~-~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~---~~~~~l~~~~~~~~~~~g~~~~~- 286 (447)
+++|+|++|+ ++. ..... .+|+++.|+||+++++ + ||++++++ ++.+.+....... ..++....
T Consensus 198 ~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~~g~--~-gg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 271 (420)
T 3gbx_A 198 AYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTLAGP--R-GGLILAKGGDEELYKKLNSAVFPS--AQGGPLMHV 271 (420)
T ss_dssp CEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGGCSC--S-CEEEEESSCCHHHHHHHHHHHC------CCCCHHH
T ss_pred CEEEEECCcchhceecccCCcccc-cCCEEEeecccCCCCC--C-ceEEEEcCCcHHHHHHhhhhcCCC--CCCCcchhH
Confidence 9999999973 221 11222 4899999999999643 2 49998887 7777766543311 12222222
Q ss_pred HHH-HHHHc-cC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHH
Q 013210 287 KVA-FELSE-RI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKA 362 (447)
Q Consensus 287 ~~a-~~~~~-~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~ 362 (447)
.++ ..++. .. +.+....+++.++++++.+.|++.+.++..++ ..+.++++.+.. ....
T Consensus 272 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~ 333 (420)
T 3gbx_A 272 IAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGG------------------TENHLFLLDLVDKNLTG 333 (420)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------CSSSEEEEECGGGTCCH
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCC------------------CCCeEEEEEcCCCCCCH
Confidence 222 21222 22 34566778889999999999998776654322 134588888752 1123
Q ss_pred HHHHHHhhc
Q 013210 363 NRLMNYLQN 371 (447)
Q Consensus 363 ~~l~~~l~~ 371 (447)
..+.+.|..
T Consensus 334 ~~~~~~l~~ 342 (420)
T 3gbx_A 334 KEADAALGR 342 (420)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555554
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=207.56 Aligned_cols=289 Identities=9% Similarity=0.021 Sum_probs=184.9
Q ss_pred chHHHHHHHHHHHhCCC---eEEE-eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCC
Q 013210 99 PTVLNLSRQMAALEGTE---AAYC-TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~---~~~~-tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d 174 (447)
+..+++++.+++++|.+ .++| |+||++|+++++++++++| .++++...|...........+ .|.++++++.++
T Consensus 78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~--~g~~~~~v~~~~ 154 (398)
T 2fyf_A 78 NLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNP--FVGEPIIITSDP 154 (398)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCT--TSCCCEEEECCT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhC--CCCceEEEecCC
Confidence 45689999999999975 5888 9999999999999998876 334455545322111111111 256666665531
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccCC-CCeEEEeCCCccccCCCC
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGAD 253 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~~-g~di~~~S~sK~~g~~g~ 253 (447)
-......+ +++|++|++++++||||.+.|+++|.++ +|+++|+|++|+.+... ..+ ++|+++.|+||++|++|.
T Consensus 155 g~~~~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~-~~~~~~di~~~s~sK~~~~~gg 229 (398)
T 2fyf_A 155 GSAPEPQT-DPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLP-VDIAETDAYYFAPQKNFASDGG 229 (398)
T ss_dssp TCCCCCCC-CTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSC-CCGGGCSEEEECTTSTTCSCSS
T ss_pred CCCCCccc-cCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcc-cCcccCcEEEEecCcccCCCCc
Confidence 00001125 6789999999999999999999988887 89999999999433221 112 479999999999998864
Q ss_pred eeEEEEEcChHHHHHHHHHhh----------hh--------hhhcCCCc-cHH-HHHHHHccCC---cHHHHHHHHHHHH
Q 013210 254 IIAGAVCGPANLVNSMMDLHQ----------GA--------LMLLGPTM-NPK-VAFELSERIP---HLGLRMKEHCHRA 310 (447)
Q Consensus 254 ~igG~l~~~~~~~~~l~~~~~----------~~--------~~~~g~~~-~~~-~a~~~~~~~~---~l~~~~~~~~~~~ 310 (447)
+ |+++.++++++.++..+. .. ....++.. ... ++..++..+. .+....+++.+++
T Consensus 230 -~-g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~ 307 (398)
T 2fyf_A 230 -L-WLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSS 307 (398)
T ss_dssp -E-EEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred -e-EEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6 899999998887754210 00 01112221 111 2222232221 1556677888999
Q ss_pred HHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccc
Q 013210 311 LIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 311 ~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
+++.+.|+++ +.++..+. |. . ..+.+++|.++...+...+.+.|... | +.++.|.
T Consensus 308 ~~l~~~L~~~~g~~~~~~~----~~----------~-~~~~~~~~~~~~~~~~~~l~~~L~~~---g-I~v~~g~----- 363 (398)
T 2fyf_A 308 QRLYSWAQERPYTTPFVTD----PG----------L-RSQVVGTIDFVDDVDAGTVAKILRAN---G-IVDTEPY----- 363 (398)
T ss_dssp HHHHHHHHHSTTEEESCCS----GG----------G-BCSSEEEEEECTTSCHHHHHHHHHHT---T-CBCCSCC-----
T ss_pred HHHHHHHHHcCCceeccCC----hh----------h-cCCcEEEEECCCCCCHHHHHHHHHHC---C-cEEecCc-----
Confidence 9999999987 44544211 10 0 12338999996322356677777652 3 3444330
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
. ...++.||||++ ..++++.++.+.++|+++.
T Consensus 364 --~----------------~~~~~~iRis~~-~~~t~e~i~~~~~~l~~~l 395 (398)
T 2fyf_A 364 --R----------------KLGRNQLRVAMF-PAVEPDDVSALTECVDWVV 395 (398)
T ss_dssp --T----------------TTCSSEEEEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred --c----------------cCCCCEEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 0 112478999999 8778888888888887653
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-23 Score=207.64 Aligned_cols=296 Identities=15% Similarity=0.091 Sum_probs=190.8
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCc-hhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLY-GGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y-~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+...++++.||++++.+.+++|+||++|+.+++++++++|| +++.++| +.+...+. ..|.++.+++.+
T Consensus 73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~-----~~G~~~~~v~~~~~ 145 (456)
T 2ez2_A 73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQE-----KNGAVFVDIVRDEA 145 (456)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHH-----HTTCEEEECBCGGG
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHH-----HcCCEEEEeccccc
Confidence 3566789999999999999999999999999999999999999 7778888 66555552 257777776542
Q ss_pred -------------CHHHHHHhhccCCc----eEEEEEcCCC-CCccccC---HHHHHHHHHhcCCEEEEeCCCCC-----
Q 013210 174 -------------DHEMVNSAIVQGRT----KVLYFESISN-PTLAVAN---IPELSRLAHDKGVTVVVDNTFSP----- 227 (447)
Q Consensus 174 -------------d~~~l~~~i~~~~t----~lV~i~~~~N-ptG~v~~---l~~I~~la~~~gi~livD~~~~~----- 227 (447)
|+++|++++ ++++ ++|++++|+| |+|.+.+ +++|+++|++||+++|+|++|+.
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~i-~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~ 224 (456)
T 2ez2_A 146 HDAGLNIAFKGDIDLKKLQKLI-DEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYF 224 (456)
T ss_dssp GCTTCCCSCTTCBCHHHHHHHH-HHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHH-HhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccccc
Confidence 789999998 4444 8999999998 9999987 99999999999999999999943
Q ss_pred -----CCCCcc---------CCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhh---hhhcCCCccHHHH
Q 013210 228 -----LVLSPA---------RLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGA---LMLLGPTMNPKVA 289 (447)
Q Consensus 228 -----~~~~~~---------~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~---~~~~g~~~~~~~a 289 (447)
+.+... ....|+++.|++|+++ .| + ||+++. ++++++.+...+... ....+.......+
T Consensus 225 ~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~-~-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 301 (456)
T 2ez2_A 225 IKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VN-I-GGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEA 301 (456)
T ss_dssp HHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CS-S-CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHH
T ss_pred ccccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CC-c-eeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHH
Confidence 333211 1236888889999876 44 4 499987 688888776554311 0011212112222
Q ss_pred --HHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC----C--HH-
Q 013210 290 --FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----T--EE- 360 (447)
Q Consensus 290 --~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~--~~- 360 (447)
......++ ....++..++.+++.+.|++.+.++..|. .|.++++.+. + ..
T Consensus 302 ~a~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~p~-------------------~~~~~~~~~~~~~~~~~~~~ 360 (456)
T 2ez2_A 302 MAIGLREAMQ--YEYIEHRVKQVRYLGDKLKAAGVPIVEPV-------------------GGHAVFLDARRFCEHLTQDE 360 (456)
T ss_dssp HHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTTCCBCSSC-------------------CSSEEEEEHHHHTTTSCGGG
T ss_pred HHHHHHHHhH--HHHHHHHHHHHHHHHHHHhcCCCccccCC-------------------CceEEEEEhHHhcCCCChhh
Confidence 22222222 34455566777888888887655444332 3457777752 1 11
Q ss_pred H-HHHHHHHh-hcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC-CHHHHHHHHHHHHH
Q 013210 361 K-ANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQFEKALS 437 (447)
Q Consensus 361 ~-~~~l~~~l-~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~-~~~~~i~~l~~al~ 437 (447)
- ...+...| .. .|+..++.|..+.- ..+... . ......+.||||++ .. .+++.++.+.++|+
T Consensus 361 ~~~~~l~~~L~~~---~gv~~~~~g~~~~~-~~~~~g--~--------~~~~~~~~iRis~~-~~~~t~e~i~~~~~~l~ 425 (456)
T 2ez2_A 361 FPAQSLAASIYVE---TGVRSMERGIISAG-RNNVTG--E--------HHRPKLETVRLTIP-RRVYTYAHMDVVADGII 425 (456)
T ss_dssp CHHHHHHHHHHHH---HSEECEEESHHHHC-BCTTTC--S--------BCCCSCCEEEEECC-TTTCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh---cCeeeecccccccc-cCcccc--c--------cccCCCCeEEEEeC-CCCCCHHHHHHHHHHHH
Confidence 1 23335555 33 24333344422110 000000 0 00011368999999 65 56666777666665
Q ss_pred Hh
Q 013210 438 RM 439 (447)
Q Consensus 438 ~~ 439 (447)
++
T Consensus 426 ~~ 427 (456)
T 2ez2_A 426 KL 427 (456)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=205.99 Aligned_cols=221 Identities=14% Similarity=0.154 Sum_probs=149.1
Q ss_pred ccCCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCeEEEeCCCchhHHHHHHhhcCc-
Q 013210 93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFPR- 161 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~~- 161 (447)
+.++.++...+++++++++.+ .+.++||+||++|+..+++.++. .+++|++..+.|+++..........
T Consensus 88 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~ 167 (459)
T 4a6r_A 88 FFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMK 167 (459)
T ss_dssp TSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCT
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCCh
Confidence 345567788899999999984 56799999999999999998765 4689999999999865443221100
Q ss_pred -------ccCeeEEEeCCC---------C--------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHH
Q 013210 162 -------ACNITTTFVDIS---------D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSR 210 (447)
Q Consensus 162 -------~~g~~~~~v~~~---------d--------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~ 210 (447)
.....+.+++.. | +++|++++.. +++++|++++++|++|.+.+ +++|.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~ 247 (459)
T 4a6r_A 168 YMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIER 247 (459)
T ss_dssp TTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred hhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence 011123344422 2 7888888832 56788999998899998887 999999
Q ss_pred HHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh--hhhhhhcC
Q 013210 211 LAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH--QGALMLLG 281 (447)
Q Consensus 211 la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~--~~~~~~~g 281 (447)
+|++||+++|+||+|+++.... .....|+++ ++|.+++++.++ |++++++++++.+...+ ....+..+
T Consensus 248 l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t--~sK~l~gg~~~l-g~v~~~~~i~~~~~~~~~~~~~~t~~~ 324 (459)
T 4a6r_A 248 ICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFT--AAKGLSSGYLPI-GAVFVGKRVAEGLIAGGDFNHGFTYSG 324 (459)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHHHHHHHCTTHHHHHHCS
T ss_pred HHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--hhhhhcCCCCCc-cceeeCHHHHHHhhcCCCcccCCCCCC
Confidence 9999999999999997653221 122356654 789999766898 88999999998887321 11223455
Q ss_pred CCccHHHHHHHHccCCcHHHHHHHHH-HHHHHHHHHH
Q 013210 282 PTMNPKVAFELSERIPHLGLRMKEHC-HRALIFARRM 317 (447)
Q Consensus 282 ~~~~~~~a~~~~~~~~~l~~~~~~~~-~~~~~l~~~L 317 (447)
+.+++.++..++..++. ....++.. ++.+++.+.|
T Consensus 325 ~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~~l 360 (459)
T 4a6r_A 325 HPVCAAVAHANVAALRD-EGIVQRVKDDIGPYMQKRW 360 (459)
T ss_dssp CHHHHHHHHHHHHHHHH-TCHHHHHHHTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHH
Confidence 55555554444432211 11233444 4445555555
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=210.87 Aligned_cols=253 Identities=20% Similarity=0.218 Sum_probs=167.6
Q ss_pred ccccccCCH-HHHHHhhcCCC--CCCCCCccccCCCCchHHHHH-HHHHHHhCCCeEEE-eCChHHHHHHHHHHhcCCCC
Q 013210 65 SATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVLNLS-RQMAALEGTEAAYC-TASGMSAISSVLMQLCSSGG 139 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~l~-~~ia~l~g~~~~~~-tsggt~A~~~al~~l~~~gd 139 (447)
+.++..|.+ +++.+.+...+ ++|++.|..+......++++. +++++++|.+.+.+ ++||++|+..++++++++||
T Consensus 53 ~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd 132 (447)
T 3h7f_A 53 SENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGE 132 (447)
T ss_dssp TCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTC
T ss_pred CCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCC
Confidence 344444444 55554443333 233332322222222334444 99999999988776 99999999999999999999
Q ss_pred eEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC------CCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH
Q 013210 140 HVVAARTLYGGTHALLTHFFPRACNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 213 (447)
Q Consensus 140 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~ 213 (447)
+|+++.++|+++............+..+..++. .|+++|+++++..++++|++++++||++. ++++|.++|+
T Consensus 133 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~ 210 (447)
T 3h7f_A 133 RLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIAD 210 (447)
T ss_dssp EEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHH
T ss_pred EEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHH
Confidence 999999998773211000000001234444442 38999999884457889999999998876 9999999999
Q ss_pred hcCCEEEEeCCC-CCC-----CCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccH-
Q 013210 214 DKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP- 286 (447)
Q Consensus 214 ~~gi~livD~~~-~~~-----~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~- 286 (447)
+||+++|+|++| .++ ..++. .++|+++.|+||++++ .+ ||++++++++++.+....... ..++...+
T Consensus 211 ~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G--~~-gG~i~~~~~~~~~l~~~~~~~--~~~~~~~~~ 284 (447)
T 3h7f_A 211 EVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGG--GR-SGLIVGKQQYAKAINSAVFPG--QQGGPLMHV 284 (447)
T ss_dssp HHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCC--CS-CEEEEECGGGHHHHHHHHTTT--TCSSCCHHH
T ss_pred HcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCC--CC-eEEEEECHHHHHHHhhhcCCc--ccCCccHHH
Confidence 999999999997 322 12222 2579999999999974 45 499999999888887654322 23333322
Q ss_pred HHH-HHHHcc-CC-cHHHHHHHHHHHHHHHHHHHHhC-----CCeee
Q 013210 287 KVA-FELSER-IP-HLGLRMKEHCHRALIFARRMKKL-----GLKVL 325 (447)
Q Consensus 287 ~~a-~~~~~~-~~-~l~~~~~~~~~~~~~l~~~L~~~-----~~~v~ 325 (447)
.++ ..++.. .+ .+..+.+++.++++++.+.|++. ++++.
T Consensus 285 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~ 331 (447)
T 3h7f_A 285 IAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVV 331 (447)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEG
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEe
Confidence 222 222222 23 46677788899999999999876 66554
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=216.67 Aligned_cols=294 Identities=11% Similarity=0.112 Sum_probs=189.5
Q ss_pred ccCCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC-------CC-CeEEEeCCCchhHHHHHHhhcC-c
Q 013210 93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFP-R 161 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~-~ 161 (447)
++++.++...+++++++++.+ .+.++||+||++|+..+++.+.. +| ++||+.++.|++.......... .
T Consensus 112 ~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 191 (457)
T 3tfu_A 112 FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPH 191 (457)
T ss_dssp SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC
T ss_pred ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCc
Confidence 355567788899999999995 46799999999999999988764 55 4899999999876433311100 0
Q ss_pred --------ccCeeEEEeCC-------CCHHHHHHhhcc--CCceEEEEEc-CCCCCccccC----HHHHHHHHHhcCCEE
Q 013210 162 --------ACNITTTFVDI-------SDHEMVNSAIVQ--GRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTV 219 (447)
Q Consensus 162 --------~~g~~~~~v~~-------~d~~~l~~~i~~--~~t~lV~i~~-~~NptG~v~~----l~~I~~la~~~gi~l 219 (447)
.....+.+++. .|+++|++++++ +++++|++++ ++|++|.+.+ +++|.++|++||+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gill 271 (457)
T 3tfu_A 192 GGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLL 271 (457)
T ss_dssp ----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEE
T ss_pred ccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 00112333333 378899998832 6789999999 9999999886 999999999999999
Q ss_pred EEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHH--h--hhhhhhcCCCccHHH
Q 013210 220 VVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL--H--QGALMLLGPTMNPKV 288 (447)
Q Consensus 220 ivD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~--~--~~~~~~~g~~~~~~~ 288 (447)
|+||+|+++.... .....|++ |++|.+++...++ |++++++++++.+... + ....+..++.+++.+
T Consensus 272 I~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~~~l-G~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aa 348 (457)
T 3tfu_A 272 IFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGYLSL-AATLCTADVAHTISAGAAGALMHGPTFMANPLACAV 348 (457)
T ss_dssp EEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCC-EEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHH
T ss_pred EEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCCcce-EEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHH
Confidence 9999997653221 11235666 6899998643688 8999999998888532 1 111223333343434
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013210 289 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368 (447)
Q Consensus 289 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~ 368 (447)
+.+++..++. ....++..++.+++.+.|+++.. +|.+... .+.|.+++|.+........+.+.
T Consensus 349 a~aaL~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~v-------------r~~G~~~~i~l~~~~~~~~~~~~ 411 (457)
T 3tfu_A 349 SVASVELLLG-QDWRTRITELAAGLTAGLDTARA---LPAVTDV-------------RVCGAIGVIECDRPVDLAVATPA 411 (457)
T ss_dssp HHHHHHHHHT-SCHHHHHHHHHHHHHHHHGGGGG---STTEEEE-------------EECSSCEEEEESSCCCHHHHHHH
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHhc---CCCeeee-------------ecCCeEEEEEECCcccHHHHHHH
Confidence 4333332211 12455667777888888876421 1111111 13577999999743335667777
Q ss_pred hhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 369 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 369 l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
|... |+ .+. | ..+.+||++. ...+++.++.+.++|+++
T Consensus 412 l~~~---Gv-~v~----------~------------------~~~~lRi~p~-~~~t~eei~~~l~~L~~~ 449 (457)
T 3tfu_A 412 ALDR---GV-WLR----------P------------------FRNLVYAMPP-YICTPAEITQITSAMVEV 449 (457)
T ss_dssp HHHT---TE-ECC----------C------------------BTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHC---Ce-EEE----------e------------------cCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence 7652 32 211 1 0257999987 555555555555555443
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=206.95 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=187.6
Q ss_pred HHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccC--eeEEEeCC------CC
Q 013210 104 LSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI------SD 174 (447)
Q Consensus 104 l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g--~~~~~v~~------~d 174 (447)
+++.+++++|.+.. +++++|++|+.+++++++++||+|+++.++|+++...+.. . ...| .++..++. .|
T Consensus 74 ~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~d 151 (405)
T 2vi8_A 74 ARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSP-V-NFSGVQYNFVAYGVDPETHVID 151 (405)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCT-T-SHHHHHSEEEEECBCTTTCSBC
T ss_pred HHHHHHHHhCCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccch-h-hhccceeEEEecccccccCCcC
Confidence 45799999998775 4567889999999999999999999999999877431100 0 0123 35555543 28
Q ss_pred HHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-C---CCCccCC-CCeEEEeCCCcccc
Q 013210 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-L---VLSPARL-GADVVVHSISKFIS 249 (447)
Q Consensus 175 ~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~---~~~~~~~-g~di~~~S~sK~~g 249 (447)
+++|++++.+.++++|+++ ++|. |...++++|.++|++||+++|+|++|+. . ...+..+ +.|+++.|+||+++
T Consensus 152 ~~~l~~~i~~~~~~~v~~~-~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~ 229 (405)
T 2vi8_A 152 YDDVREKARLHRPKLIVAA-AAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLR 229 (405)
T ss_dssp HHHHHHHHHHHCCSEEEEC-CSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTC
T ss_pred HHHHHHHHHhcCCeEEEEe-CCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCC
Confidence 9999999833378888874 3443 5777999999999999999999999952 1 1111111 57899999999998
Q ss_pred CCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCC-CccHHHHH-HHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013210 250 GGADIIAGAVCGPANLVNSMMDLHQGALMLLGP-TMNPKVAF-ELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVL 325 (447)
Q Consensus 250 ~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~-~~~~~~a~-~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~ 325 (447)
++. ||++++++++++.+....... ..++ .....++. .++.. ...+....+++.++++++.+.|++.+.++.
T Consensus 230 g~~---gG~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 304 (405)
T 2vi8_A 230 GPR---GGMILCQEQFAKQIDKAIFPG--IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLV 304 (405)
T ss_dssp CCS---CEEEEECHHHHHHHHHHHTTT--TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred CCC---CeEEEEcHHHHHHHHhhhccc--ccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEe
Confidence 432 399999998888887654322 2222 23333332 22222 234566778889999999999998866665
Q ss_pred CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHH
Q 013210 326 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 404 (447)
Q Consensus 326 ~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~ 404 (447)
.|. +.+.++++.++.. .....+.+.|... | +.+..|.. |.... +
T Consensus 305 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~------~~~~~----~--- 349 (405)
T 2vi8_A 305 SGG------------------TDNHLLLVDLRPQQLTGKTAEKVLDEV---G-ITVNKNTI------PYDPE----S--- 349 (405)
T ss_dssp GGS------------------CSSSEEEEECGGGTCCHHHHHHHHHHH---T-EECEEECC------TTCSS----C---
T ss_pred cCC------------------CCceEEEEEccCCCCCHHHHHHHHHHc---C-ceeccCcC------ccccC----C---
Confidence 432 2355889998631 1245566666542 3 45555531 10000 0
Q ss_pred HHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHHh
Q 013210 405 KALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 405 ~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~~ 439 (447)
...++.+|||++ . ..+++.++.+.++|+++
T Consensus 350 ----~~~~~~iRis~~-~~~~~~~~~~~i~~~~~~l~~~ 383 (405)
T 2vi8_A 350 ----PFVTSGIRIGTA-AVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp ----TTTCSEEEEECH-HHHHTTCCHHHHHHHHHHHHHH
T ss_pred ----CCCCCceEEeee-eeeecCCCHHHHHHHHHHHHHH
Confidence 012467999999 5 23466666666666554
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-23 Score=206.01 Aligned_cols=295 Identities=12% Similarity=0.094 Sum_probs=175.6
Q ss_pred CCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc--------CCCCeEEEeCCCchhHHHHHHhhcCc---
Q 013210 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTHFFPR--- 161 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~--- 161 (447)
++..+...++++.++++++ .+.++||+||++|+..+++.++ ..+++|++.++.|+++..........
T Consensus 68 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 147 (430)
T 3i4j_A 68 QFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGAR 147 (430)
T ss_dssp TCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-----------------
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccc
Confidence 4456778899999999985 4679999999999999998876 34689999999999876433111000
Q ss_pred -----ccCe--eEEEeCCC--------CHHHHHHhhcc---CCceEEEEEcCCC-CCccccC----HHHHHHHHHhcCCE
Q 013210 162 -----ACNI--TTTFVDIS--------DHEMVNSAIVQ---GRTKVLYFESISN-PTLAVAN----IPELSRLAHDKGVT 218 (447)
Q Consensus 162 -----~~g~--~~~~v~~~--------d~~~l~~~i~~---~~t~lV~i~~~~N-ptG~v~~----l~~I~~la~~~gi~ 218 (447)
.... .+.+++.+ |+++|++++++ +++++|++++++| ++|.+.+ +++|.++|++||++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 227 (430)
T 3i4j_A 148 RELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGII 227 (430)
T ss_dssp --------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCE
T ss_pred ccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence 0000 23334443 44888888842 5678888888898 9999877 99999999999999
Q ss_pred EEEeCCCCCCCCC-----ccCC-C--CeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHH----hhhhhhhcCCCcc
Q 013210 219 VVVDNTFSPLVLS-----PARL-G--ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDL----HQGALMLLGPTMN 285 (447)
Q Consensus 219 livD~~~~~~~~~-----~~~~-g--~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~----~~~~~~~~g~~~~ 285 (447)
+|+||+|+++... .... + .|++ ++||.+++ | .|+ |++++++++++.+... .. ..+..++.++
T Consensus 228 li~DEv~~~~~~~g~~~~~~~~~~~~~di~--t~sK~l~~-G~~r~-G~~~~~~~i~~~~~~~~~~~~~-~~t~~~~~~~ 302 (430)
T 3i4j_A 228 FIADEVMSGMGRCGSPLALSRWSGVTPDIA--VLGKGLAA-GYAPL-AGLLAAPQVYETVMGGSGAFMH-GFTYAGHPVS 302 (430)
T ss_dssp EEEECTTTTTTTTSSSSGGGGTTTCCCSEE--EECGGGTT-TSSCC-EEEEECHHHHHHHHHTTCBCCC-CCTTTTCHHH
T ss_pred EEEechhhCCCcccchhhhhhhcCCCCcEE--EEcccccC-Ccccc-EEEEECHHHHHHHhccCCcccc-cCCCCCCHHH
Confidence 9999999665321 1222 3 4555 58899995 8 999 8999999999888763 22 1123334444
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH-
Q 013210 286 PKVAFELSERIPHLGLRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE- 360 (447)
Q Consensus 286 ~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~- 360 (447)
+.++..++..++. ....++..++.+++.+.|++ ++.....+ +.|.++++.+.+..
T Consensus 303 ~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~ 362 (430)
T 3i4j_A 303 VAAGLSVLDIVER-EDLTGAAKERGAQLLAGLQALQARFPQMMQVR-------------------GTGLLLGVVLGDLAT 362 (430)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEEC----
T ss_pred HHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------EEEEEEEEEeccccc
Confidence 4444443332211 12344455555555555544 33211111 35678999886321
Q ss_pred --------HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013210 361 --------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 432 (447)
Q Consensus 361 --------~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 432 (447)
.+..+.+.|... |+ .+..+.. +. .+...+.+||+++ ...+++.++.+
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~---Gv-~v~~~~~------~~--------------~~~~~~~iRi~~~-~~~t~e~i~~~ 417 (430)
T 3i4j_A 363 GQAFETPGIASRIGAAALKR---GL-ITYPGSG------AE--------------PNGRGDHLLLGPP-LSITAAEVDGL 417 (430)
T ss_dssp --------CHHHHHHHHHHT---TE-ECC-------------------------------CEEEECCC-TTCCHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHhC---CC-EEEeccc------cc--------------CCCCCCEEEEECC-CCCCHHHHHHH
Confidence 124566666642 32 2222200 00 1223578999988 65555556555
Q ss_pred HHHHHHh
Q 013210 433 EKALSRM 439 (447)
Q Consensus 433 ~~al~~~ 439 (447)
.++|+++
T Consensus 418 l~~l~~~ 424 (430)
T 3i4j_A 418 LALLAGA 424 (430)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=206.20 Aligned_cols=175 Identities=11% Similarity=0.119 Sum_probs=128.8
Q ss_pred cCCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCeEEEeCCCchhHHHHHHhhcCc--
Q 013210 94 SRHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFPR-- 161 (447)
Q Consensus 94 ~r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~~-- 161 (447)
..+..+...+++++++++.+ .+.++||+||++|+..+++.+.. .+++|++..+.||+...........
T Consensus 90 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 169 (460)
T 3gju_A 90 VGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDL 169 (460)
T ss_dssp TTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGG
T ss_pred cccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcc
Confidence 34556778899999999874 46799999999999999988763 4689999999998865443211000
Q ss_pred ------ccCeeEEEeC--C----CC------------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHH
Q 013210 162 ------ACNITTTFVD--I----SD------------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSR 210 (447)
Q Consensus 162 ------~~g~~~~~v~--~----~d------------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~ 210 (447)
.....+..++ . +| +++|++++.+ +++++|++++++|++|.+.+ +++|.+
T Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~ 249 (460)
T 3gju_A 170 FHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQA 249 (460)
T ss_dssp GTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHH
T ss_pred cccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHH
Confidence 0111233343 2 22 6889988832 56889999999999998776 999999
Q ss_pred HHHhcCCEEEEeCCCCCCCCCc-----c--CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH
Q 013210 211 LAHDKGVTVVVDNTFSPLVLSP-----A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD 271 (447)
Q Consensus 211 la~~~gi~livD~~~~~~~~~~-----~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~ 271 (447)
+|++||+++|+||+|+++.... . ....|++ +++|.+++.+.|+ |++++++++++.+..
T Consensus 250 l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~l~gG~~~l-g~v~~~~~i~~~~~~ 314 (460)
T 3gju_A 250 VLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLI--TIAKGLTSAYAPL-SGVIVADRVWQVLVQ 314 (460)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE--EECGGGTTTSSCC-EEEEEEHHHHHHHHH
T ss_pred HHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee--eeehhhcCCCCCe-EEEEECHHHHHHHhc
Confidence 9999999999999997663221 1 1234555 5789998633788 899999999888863
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=208.04 Aligned_cols=292 Identities=13% Similarity=0.139 Sum_probs=187.4
Q ss_pred CCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhc---------Ccc
Q 013210 96 HFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF---------PRA 162 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~---------~~~ 162 (447)
+..+...++++.++++++ .+.++||+||++|+..+++.+. ..+++|++.++.|++......... +..
T Consensus 82 ~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 161 (433)
T 1zod_A 82 MLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAA 161 (433)
T ss_dssp CCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCC
T ss_pred cCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCC
Confidence 345667889999999986 4679999999999999998653 335799999999987654332110 111
Q ss_pred cCeeEEEeCC------C---------CHHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEE
Q 013210 163 CNITTTFVDI------S---------DHEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVV 220 (447)
Q Consensus 163 ~g~~~~~v~~------~---------d~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~li 220 (447)
.|+....++. + |+++|++++++ +++++|++++++||+|.+.+ +++|.++|++||+++|
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li 241 (433)
T 1zod_A 162 VGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLI 241 (433)
T ss_dssp TTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEE
T ss_pred CCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEE
Confidence 2444333321 1 38999998843 57888888887899998766 9999999999999999
Q ss_pred EeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh-hhhhcCCCccHHHHHHH
Q 013210 221 VDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-ALMLLGPTMNPKVAFEL 292 (447)
Q Consensus 221 vD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~-~~~~~g~~~~~~~a~~~ 292 (447)
+||+|+++.... .....|+ .|++|.+++ |.|+ |++++++++++.+...... ..+..++.+++.++..+
T Consensus 242 ~DEv~~~~g~~g~~~~~~~~~~~~di--~s~sK~~~~-G~~i-g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aa 317 (433)
T 1zod_A 242 LDEAQTGVGRTGTMFACQRDGVTPDI--LTLSKTLGA-GLPL-AAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRV 317 (433)
T ss_dssp EECTTTTTTTTSSSSTHHHHTCCCSE--EEECHHHHT-TSSC-EEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHH
T ss_pred EeccccCCCcCchHhHHhhcCCCCCE--EEecccccC-CCCe-eEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHH
Confidence 999997653211 1223455 478899996 8998 9999999998888653210 01122333333333333
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------H
Q 013210 293 SERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------E 360 (447)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------~ 360 (447)
+..++. ....+++.++++++.+.|++. +.....+ +.|.++++.++.. .
T Consensus 318 l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~ 377 (433)
T 1zod_A 318 LDVVQR-DGLVARANVMGDRLRRGLLDLMERFDCIGDVR-------------------GRGLLLGVEIVKDRRTKEPADG 377 (433)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEEEEETTTTEECTT
T ss_pred HHHHHh-CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------EEEEEEEEEEecCccccCCChH
Confidence 322211 124456677777787777653 3211111 3567889887521 2
Q ss_pred HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 361 ~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
....+.+.|... | +.+..|+. .+ .++.+|||++ ...+++.++.+.++|+++
T Consensus 378 ~~~~~~~~l~~~---G-v~v~~~~~----------------------~~-~~~~lRi~~~-~~~t~~~i~~~l~~l~~~ 428 (433)
T 1zod_A 378 LGAKITRECMNL---G-LSMNIVQL----------------------PG-MGGVFRIAPP-LTVSEDEIDLGLSLLGQA 428 (433)
T ss_dssp HHHHHHHHHHHT---T-EECCEECC----------------------TT-SCCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC---C-CeEeccCC----------------------CC-CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence 356677777642 3 34333310 01 1478999988 666667677666666554
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=208.22 Aligned_cols=219 Identities=14% Similarity=0.182 Sum_probs=151.0
Q ss_pred CCCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhh---------cCccc
Q 013210 96 HFNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FPRAC 163 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~---------~~~~~ 163 (447)
+.++...++++++++++ +.+.++||+||++|+..+++.+.. ++++|++..+.|+++....... .+...
T Consensus 92 ~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 171 (434)
T 3l44_A 92 TPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA 171 (434)
T ss_dssp SCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSST
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcC
Confidence 34667788999999998 567899999999999999987654 6789999999998764322100 00001
Q ss_pred Ce------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013210 164 NI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS 231 (447)
Q Consensus 164 g~------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~ 231 (447)
++ .+..++.+|+++|+++++. +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++...
T Consensus 172 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g 251 (434)
T 3l44_A 172 GVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFM 251 (434)
T ss_dssp TCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSS
T ss_pred CCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceecc
Confidence 11 4566677799999998842 56889999999999999987 999999999999999999999765211
Q ss_pred c------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHH
Q 013210 232 P------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRM 303 (447)
Q Consensus 232 ~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 303 (447)
. .....|+ .|+||.++ .|.++ |++++++++++.+..... ...+..++.+.+.++..++..++. ....
T Consensus 252 ~~~~~~~~~~~~di--~t~sK~~~-~G~~i-G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~~~ 326 (434)
T 3l44_A 252 YGGAQDLLGVTPDL--TALGKVIG-GGLPI-GAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EGLY 326 (434)
T ss_dssp SSCHHHHHTCCCSE--EEEEGGGG-TTSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHH
T ss_pred ccHHHHHcCCCCCe--eehhhhhc-CCcCe-eeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-ccHH
Confidence 1 1123454 46889998 68999 888999998877654211 111233333344444444432222 2344
Q ss_pred HHHHHHHHHHHHHHHh
Q 013210 304 KEHCHRALIFARRMKK 319 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~ 319 (447)
++..++.+++.+.|++
T Consensus 327 ~~~~~~~~~l~~~L~~ 342 (434)
T 3l44_A 327 EKLDELGATLEKGILE 342 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666654
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=205.38 Aligned_cols=298 Identities=15% Similarity=0.107 Sum_probs=189.3
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC----CCCe---EEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS----SGGH---VVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~----~gd~---Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
.+...++++.++++++.+.++||+||++|+.+++++++. +||+ |+++.+.|..+...+. ..|.++..+
T Consensus 75 ~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~-----~~g~~~~~~ 149 (467)
T 1ax4_A 75 SRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE-----LNGCKAINI 149 (467)
T ss_dssp CHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH-----HTTCEEEEC
T ss_pred CccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh-----ccCCceecc
Confidence 356789999999999999999999999999999999888 9998 9998555566555552 135555443
Q ss_pred C---------------CCCHHHHHHhhcc---CCceEEEEEcCCCCC-ccccC---HHHHHHHHHhcCCEEEEeCCCCC-
Q 013210 171 D---------------ISDHEMVNSAIVQ---GRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFSP- 227 (447)
Q Consensus 171 ~---------------~~d~~~l~~~i~~---~~t~lV~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~~~- 227 (447)
+ ..|+++|+++++. +++++|++++|+||+ |.+.+ +++|+++|++||+++|+|+++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~ 229 (467)
T 1ax4_A 150 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE 229 (467)
T ss_dssp BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred cccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhh
Confidence 1 1289999999943 369999999999999 78765 67999999999999999998631
Q ss_pred -----------C-CCCccC------CCCeEEEeCCCccccCCCCeeEEEEEcC-h-HHHHHHHHHhhhh--hhhcCCCcc
Q 013210 228 -----------L-VLSPAR------LGADVVVHSISKFISGGADIIAGAVCGP-A-NLVNSMMDLHQGA--LMLLGPTMN 285 (447)
Q Consensus 228 -----------~-~~~~~~------~g~di~~~S~sK~~g~~g~~igG~l~~~-~-~~~~~l~~~~~~~--~~~~g~~~~ 285 (447)
. ..++.. ..+|+++.|+||++|++ +||+++.+ + ++++.+...+... ....+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (467)
T 1ax4_A 230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG 306 (467)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCH
T ss_pred cchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCCccc
Confidence 1 112111 13688999999999865 45888877 7 8887776544311 111122111
Q ss_pred -HHHHHH-HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-------e
Q 013210 286 -PKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-------M 356 (447)
Q Consensus 286 -~~~a~~-~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~-------l 356 (447)
...+.. .+..... .+.+++..++++++.+.|++.+..+..|. .|.++++. +
T Consensus 307 ~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 366 (467)
T 1ax4_A 307 RDMAAMVQGLEEGTE-EEYLHYRIGQVKYLGDRLREAGIPIQYPT-------------------GGHAVFVDCKKLVPQI 366 (467)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTTCCBCSSC-------------------CSSEEEEESTTTCTTS
T ss_pred hHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhCCCCcccCC-------------------CceEEEEehhhhcccc
Confidence 111111 2222222 22444555777889999987554443332 34577777 4
Q ss_pred CC-HHHHHHHHHHh-hcccccccccccc-cCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC-CHHHHHHHH
Q 013210 357 ET-EEKANRLMNYL-QNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQF 432 (447)
Q Consensus 357 ~~-~~~~~~l~~~l-~~~~~~g~~~vs~-G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~-~~~~~i~~l 432 (447)
+. ......+...| ... | +.++. |...... .+. .... .....+.||||++ .. .+++.++.+
T Consensus 367 ~~~~~~~~~l~~~L~~~~---g-v~v~~~g~~~~~~-~~~--~g~~--------~~~~~~~iRls~~-~~~~t~e~i~~~ 430 (467)
T 1ax4_A 367 PGDQFPAQAVINALYLES---G-VRAVEIGSFLLGR-DPA--TGEQ--------KHADMEFMRLTIA-RRVYTNDHMDYI 430 (467)
T ss_dssp CGGGCHHHHHHHHHHHHH---C-EECEEESHHHHCB-CTT--TCSB--------CCCSCCEEEEECC-TTSSCHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhc---C-ceeeecCcccccc-ccc--cccc--------cccccceEEEecc-cccCCHHHHHHH
Confidence 32 11356777777 542 3 45554 4221000 000 0000 0011378999999 54 566667776
Q ss_pred HHHHHHh
Q 013210 433 EKALSRM 439 (447)
Q Consensus 433 ~~al~~~ 439 (447)
.++|+++
T Consensus 431 ~~~l~~~ 437 (467)
T 1ax4_A 431 ADALIGL 437 (467)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 6666554
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-23 Score=206.40 Aligned_cols=291 Identities=11% Similarity=0.139 Sum_probs=187.1
Q ss_pred CCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCeEEEeCCCchhHHHHHHhhcC----
Q 013210 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFP---- 160 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~---- 160 (447)
++..+...++++.++++++ .+.++||+||++|+.++++.+.. ++++|++..+.|++..........
T Consensus 89 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~ 168 (449)
T 3a8u_X 89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGN 168 (449)
T ss_dssp SCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHH
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhh
Confidence 4556677899999999985 46799999999999999987753 678999999999876432211110
Q ss_pred ------cccCeeEEEeCC--------CC--------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHHH
Q 013210 161 ------RACNITTTFVDI--------SD--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRL 211 (447)
Q Consensus 161 ------~~~g~~~~~v~~--------~d--------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~l 211 (447)
...++....++. .| +++|++++++ +++++|++++.+|++|.+.+ +++|.++
T Consensus 169 ~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l 248 (449)
T 3a8u_X 169 RKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREI 248 (449)
T ss_dssp HTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHH
T ss_pred ccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHH
Confidence 011333333221 14 8999998842 46788888888889999888 9999999
Q ss_pred HHhcCCEEEEeCCCCCCCCC--c-----cCCCCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHh--------hh
Q 013210 212 AHDKGVTVVVDNTFSPLVLS--P-----ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH--------QG 275 (447)
Q Consensus 212 a~~~gi~livD~~~~~~~~~--~-----~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~--------~~ 275 (447)
|++||+++|+||+|+++... . .....|++ |+||.+++ | .|+ |++++++++++.+.... ..
T Consensus 249 ~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (449)
T 3a8u_X 249 CNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPM-GAVIASTEIYQTFMNQPTPEYAVEFPH 324 (449)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCC-EEEEEEHHHHHHHHTCSSCTTSCSSCC
T ss_pred HHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCce-EEEEECHHHHHHhhccCcccccccccc
Confidence 99999999999999655321 1 11235765 68899996 6 788 78888888888776431 00
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..+..++.+...++..++..++. ....+++.++.+++.+.|++.+. .|.....+ +.|.++++.
T Consensus 325 ~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~~~~~~-------------~~g~~~~i~ 387 (449)
T 3a8u_X 325 GYTYSAHPVACAAGLAALCLLQK-ENLVQSVAEVAPHFEKALHGIKG---AKNVIDIR-------------NFGLAGAIQ 387 (449)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHTTTT---STTEEEEE-------------EETTEEEEE
T ss_pred cCCCcccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHhc---CCCeEEEe-------------eeEEEEEEE
Confidence 11122222222222333322111 12556778888889898877431 01000001 356799999
Q ss_pred eCCHH-----HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013210 356 METEE-----KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS 430 (447)
Q Consensus 356 l~~~~-----~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~ 430 (447)
++... ....+.+.|... | +.++.+ | +.||||++ ...+++.++
T Consensus 388 ~~~~~~~~~~~~~~~~~~l~~~---G-v~v~~~-------------------------g---~~iRis~~-~~~t~~~i~ 434 (449)
T 3a8u_X 388 IAPRDGDAIVRPFEAGMALWKA---G-FYVRFG-------------------------G---DTLQFGPT-FNSKPQDLD 434 (449)
T ss_dssp ECCBTTBSSHHHHHHHHHHHHH---T-EECEEE-------------------------T---TEEEECCC-TTCCHHHHH
T ss_pred EecCcccccccHHHHHHHHHHC---C-cEEecC-------------------------C---CEEEEECC-CcCCHHHHH
Confidence 97421 123566666542 3 232221 1 67999988 666777777
Q ss_pred HHHHHHHHh
Q 013210 431 QFEKALSRM 439 (447)
Q Consensus 431 ~l~~al~~~ 439 (447)
.+.++|+++
T Consensus 435 ~~l~~l~~~ 443 (449)
T 3a8u_X 435 RLFDAVGEV 443 (449)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666654
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=202.59 Aligned_cols=293 Identities=15% Similarity=0.114 Sum_probs=181.2
Q ss_pred ccCCCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCc------
Q 013210 93 YSRHFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPR------ 161 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~------ 161 (447)
+..+..+...+++++++++.+ .+.++||+||++|+..+++.+.. .+++|++..+.||+...........
T Consensus 101 ~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 180 (453)
T 4ffc_A 101 FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKS 180 (453)
T ss_dssp TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred cCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccccc
Confidence 345567778899999999986 35799999999999999976542 4579999999999876544221110
Q ss_pred ---ccCeeEEEeCCC----C-------------HHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCC
Q 013210 162 ---ACNITTTFVDIS----D-------------HEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV 217 (447)
Q Consensus 162 ---~~g~~~~~v~~~----d-------------~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi 217 (447)
.....+..++.. | ++.|++++...++++|++++++++.|.+.+ +++|.++|++||+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~ 260 (453)
T 4ffc_A 181 QFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGV 260 (453)
T ss_dssp TSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 011134444433 3 356666663345677777777777777766 9999999999999
Q ss_pred EEEEeCCCCCCCCCc-----cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHH
Q 013210 218 TVVVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292 (447)
Q Consensus 218 ~livD~~~~~~~~~~-----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~ 292 (447)
++|+||+|+++.... ...++...+.|++|.+++ |.|+ |++++++++++.+..... ..+..++.+.+.++..+
T Consensus 261 llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~-G~~~-G~~~~~~~i~~~~~~~~~-~~t~~~~~~~~aaa~aa 337 (453)
T 4ffc_A 261 VFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAG-GMPL-SAVTGRAELMDAVYAGGL-GGTYGGNPVTCAAAVAA 337 (453)
T ss_dssp EEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGT-TSSC-EEEEEEHHHHTTSCTTSS-CCSSSSCHHHHHHHHHH
T ss_pred EEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcC-CcCe-EEEEECHHHHhhhcccCc-CCCCCcCHHHHHHHHHH
Confidence 999999997653221 111333333458899997 8999 888889998877754433 22233444444444443
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-------CHHH
Q 013210 293 SERIPHLGLRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-------TEEK 361 (447)
Q Consensus 293 ~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-------~~~~ 361 (447)
+..++. ....++..++.+++.+.|++ ++.....+ +.|.++++.+. ....
T Consensus 338 l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~ 397 (453)
T 4ffc_A 338 LGVMRE-LDLPARARAIEASVTSRLSALAEEVDIIGEVR-------------------GRGAMLAIEIVKPGTLEPDAAL 397 (453)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEE-------------------EETTEEEEEEBCTTSCCBCHHH
T ss_pred HHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-------------------eeceEEEEEEecCcccCCCHHH
Confidence 332211 12334445555555555543 33311111 46779999983 3445
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
...+.+.+... | +.+..+ +...+.+||+++ ...+++.++.+.++|++
T Consensus 398 ~~~~~~~l~~~---G-v~v~~~-------------------------~~~~~~iRi~~~-~~~t~e~i~~~l~~l~~ 444 (453)
T 4ffc_A 398 TKSIAAEALSQ---G-VLILTC-------------------------GTFGNVIRLLPP-LVIGDDLLDEGITALSD 444 (453)
T ss_dssp HHHHHHHHHHT---T-EECCEE-------------------------CTTSCEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---C-CEEecC-------------------------CCCCCEEEEECC-CCCCHHHHHHHHHHHHH
Confidence 66777777652 3 232222 112367999988 65555555555555444
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=208.78 Aligned_cols=294 Identities=13% Similarity=0.161 Sum_probs=188.6
Q ss_pred CCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCeEEEeCCCchhHHHHHHhhcCc---
Q 013210 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFPR--- 161 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~~--- 161 (447)
...++...+++++++++.+ .+.++|++||++|+..+++.+.. .+++||+..+.|+++..........
T Consensus 93 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~ 172 (476)
T 3i5t_A 93 YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGN 172 (476)
T ss_dssp TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGG
T ss_pred ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhh
Confidence 4566778899999999984 57899999999999999988753 3579999999998876443211000
Q ss_pred -----ccCeeEEEeCC-------C-C--------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHHHHHH
Q 013210 162 -----ACNITTTFVDI-------S-D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAH 213 (447)
Q Consensus 162 -----~~g~~~~~v~~-------~-d--------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~~la~ 213 (447)
.....+.+++. + + +++|+++++. +++++|++++++|++|.+.+ +++|.++|+
T Consensus 173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~ 252 (476)
T 3i5t_A 173 WPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICE 252 (476)
T ss_dssp CTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred ccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHH
Confidence 00112333332 1 1 7889888842 56899999999999998665 999999999
Q ss_pred hcCCEEEEeCCCCCCCCC-----cc-CC--CCeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHHHh------hhhhh
Q 013210 214 DKGVTVVVDNTFSPLVLS-----PA-RL--GADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH------QGALM 278 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~~-----~~-~~--g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~------~~~~~ 278 (447)
+||+++|+||+|+++... .. .+ ..|+++ ++|.+++ | .++ |++++++++++.+.... ....+
T Consensus 253 ~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t--~sK~l~~-G~~pl-g~v~~~~~i~~~~~~~~~~~~~~~~~~t 328 (476)
T 3i5t_A 253 KHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIIT--FAKGVTS-GYVPL-GGLAISEAVLARISGENAKGSWFTNGYT 328 (476)
T ss_dssp HTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEE--ECGGGGT-TSSCC-EEEEECHHHHHTTSGGGCTTCEECCCCT
T ss_pred HcCCEEEEEecccCCccccCceeeecccCCCcchhh--hhhhhcC-CCcCe-EEEEECHHHHHHHhcCCcccccccccCC
Confidence 999999999999765321 11 22 356664 7899995 7 898 88889999988776431 11122
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
..++++++.++.+++..++. ....++..++.+++.+.|+++.. +|.... ..+.|.++.+.+..
T Consensus 329 ~~~np~a~aAa~aaL~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~-------------v~~~G~~~~i~~~~ 391 (476)
T 3i5t_A 329 YSNQPVACAAALANIELMER-EGIVDQAREMADYFAAALASLRD---LPGVAE-------------TRSVGLVGCVQCLL 391 (476)
T ss_dssp TTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHTTTT---STTEEE-------------EEEETTEEEEEECC
T ss_pred CCcCHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhc---CCCeEE-------------EEecCceeEEEEec
Confidence 33444444444444332211 23456677788888888875431 111111 11467799999863
Q ss_pred HH-----------HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----C
Q 013210 359 EE-----------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----G 423 (447)
Q Consensus 359 ~~-----------~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~ 423 (447)
.. ....+.+.|.. .|++. . | .| +.|||++. . +
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~---~Gv~v-~----------~---------------~g---~~iRi~p~-l~~t~e 438 (476)
T 3i5t_A 392 DPTRADGTAEDKAFTLKIDERCFE---LGLIV-R----------P---------------LG---DLCVISPP-LIISRA 438 (476)
T ss_dssp C-----CCHHHHHHHHHHHHHHHH---TTEEC-E----------E---------------ET---TEEEECCC-TTCCHH
T ss_pred CccccccccchhHHHHHHHHHHHH---CCCEE-E----------e---------------cC---CEEEEECC-CCCCHH
Confidence 21 24556666654 23211 1 1 02 67999966 4 4
Q ss_pred CHHHHHHHHHHHHHHhhhc
Q 013210 424 TLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 424 ~~~~~i~~l~~al~~~~~~ 442 (447)
++++.++.|.++++++.+.
T Consensus 439 ~i~~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 439 QIDEMVAIMRQAITEVSAA 457 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665543
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-23 Score=208.02 Aligned_cols=257 Identities=12% Similarity=0.143 Sum_probs=168.7
Q ss_pred ccCCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCeEEEeCCCchhHHHHHHhhcC--
Q 013210 93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFP-- 160 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~-- 160 (447)
+.++.++...+++++++++.+ .+.++|++||++|+..+++.+.. .+++||+..+.|+++.........
T Consensus 93 ~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~ 172 (472)
T 3hmu_A 93 FFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMA 172 (472)
T ss_dssp SSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCH
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCCh
Confidence 334567778899999999985 46799999999999999988764 467999999999886543311110
Q ss_pred -------cccCeeEEEeCCC---------C--------HHHHHHhhcc---CCceEEEEEcCCCCCccccC----HHHHH
Q 013210 161 -------RACNITTTFVDIS---------D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELS 209 (447)
Q Consensus 161 -------~~~g~~~~~v~~~---------d--------~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~----l~~I~ 209 (447)
...+ +..++.. | +++|++++.. +++++|++|+++|++|.+.+ +++|.
T Consensus 173 ~~~~~~~~~~~--~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~ 250 (472)
T 3hmu_A 173 GMHAQSGLIPD--VHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQ 250 (472)
T ss_dssp HHHHTTCCCSS--EEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHH
T ss_pred hhccccCCCCC--cEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHH
Confidence 1012 3333322 1 7888888832 56889999999999999987 99999
Q ss_pred HHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHh-hhhhhhcC
Q 013210 210 RLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGALMLLG 281 (447)
Q Consensus 210 ~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~~~~~g 281 (447)
++|++||+++|+||+|+++.... .....|+++ ++|.+++.+.++ |++++++++++.+.... ....+..+
T Consensus 251 ~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--~sK~l~gg~~pl-G~v~~~~~i~~~~~~~~~~~~~t~~~ 327 (472)
T 3hmu_A 251 RICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--IAKGLSSGYAPI-GGSIVCDEVAHVIGKDEFNHGYTYSG 327 (472)
T ss_dssp HHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTSSCC-EEEEEEHHHHHHHTTSCBCCCCTTTT
T ss_pred HHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--echhhhcCCcce-EEEEECHHHHHhcccCCccccCCCCC
Confidence 99999999999999997663221 122356665 779999776898 88888999988883110 11112334
Q ss_pred CCccHHHHHHHHccCCcHHHHHHHHH-HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--
Q 013210 282 PTMNPKVAFELSERIPHLGLRMKEHC-HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-- 358 (447)
Q Consensus 282 ~~~~~~~a~~~~~~~~~l~~~~~~~~-~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-- 358 (447)
+.+++.++.+++..++. ....++.. ++.+++.+.|+++.. +|.... ..+.|.++.|.+..
T Consensus 328 np~a~aAa~aaL~~~~~-~~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~-------------vr~~G~~~~i~~~~~~ 390 (472)
T 3hmu_A 328 HPVAAAVALENLRILEE-ENILDHVRNVAAPYLKEKWEALTD---HPLVGE-------------AKIVGMMASIALTPNK 390 (472)
T ss_dssp CHHHHHHHHHHHHHHHH-TTHHHHHHHTHHHHHHHHHHGGGG---STTEEE-------------EEEETTEEEEEECSCG
T ss_pred CHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhc---CCCeEE-------------EEecCceEEEEEecCc
Confidence 44444444444332211 22455566 777788888865421 111100 11467799999863
Q ss_pred ----------HHHHHHHHHHhhc
Q 013210 359 ----------EEKANRLMNYLQN 371 (447)
Q Consensus 359 ----------~~~~~~l~~~l~~ 371 (447)
...+..+.+.|..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~ 413 (472)
T 3hmu_A 391 ASRAKFASEPGTIGYICRERCFA 413 (472)
T ss_dssp GGTCCBSSCTTHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHH
Confidence 1224566666664
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-22 Score=200.49 Aligned_cols=292 Identities=16% Similarity=0.115 Sum_probs=184.8
Q ss_pred ccCCCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhhcCc------
Q 013210 93 YSRHFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPR------ 161 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~------ 161 (447)
+..+..+...+++++++++.+ .+.++||+||++|+..+++.+.. .+++|++..+.||+...........
T Consensus 98 ~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 177 (451)
T 3oks_A 98 FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKD 177 (451)
T ss_dssp TTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred CCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccccc
Confidence 344567778899999999985 36799999999999999987653 4579999999999876544221100
Q ss_pred ---ccCeeEEEeCCC------------------CHHHHHHhhc----cCCceEEEEEcCCCCCccccC----HHHHHHHH
Q 013210 162 ---ACNITTTFVDIS------------------DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLA 212 (447)
Q Consensus 162 ---~~g~~~~~v~~~------------------d~~~l~~~i~----~~~t~lV~i~~~~NptG~v~~----l~~I~~la 212 (447)
.....+.+++.. +++.+++.++ .+++++|++++++++.|.+.+ +++|.++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~ 257 (451)
T 3oks_A 178 GFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWC 257 (451)
T ss_dssp TCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred CCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHH
Confidence 011234445443 2444444442 246778888888888888876 99999999
Q ss_pred HhcCCEEEEeCCCCCCCCC-----ccCC--CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCcc
Q 013210 213 HDKGVTVVVDNTFSPLVLS-----PARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN 285 (447)
Q Consensus 213 ~~~gi~livD~~~~~~~~~-----~~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~ 285 (447)
++||+++|+||+|+++... ...+ ..|++ |++|.+++ |.|+ |++++++++++.+..... ..+..++.+.
T Consensus 258 ~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G~~i-G~v~~~~~~~~~~~~~~~-~~t~~~~~~~ 332 (451)
T 3oks_A 258 RKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-GLPL-SAVTGRAEIMDSPHVSGL-GGTYGGNPIA 332 (451)
T ss_dssp HHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSC-EEEEEEHHHHTCSCTTSB-CCSSSSCHHH
T ss_pred HHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-Ccce-EEEEECHHHHhhhcCCCc-CCCCCCCHHH
Confidence 9999999999999665321 1122 34555 68899996 8999 888889998877654333 2223334444
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe-----
Q 013210 286 PKVAFELSERIPHLGLRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM----- 356 (447)
Q Consensus 286 ~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l----- 356 (447)
+.++..++..++. ....++..++.+++.+.|++ ++..... .+.|.++++.+
T Consensus 333 ~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~G~~~~~~~~~~~~ 392 (451)
T 3oks_A 333 CAAALATIETIES-EGLVARAQQIEKIMKDRLGRLQAEDDRIGDV-------------------RGRGAMIAMELVKAGT 392 (451)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-------------------EEETTEEEEEEBSTTS
T ss_pred HHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-------------------EEeeEEEEEEEecCcc
Confidence 4444333332211 12344555555566665544 3321111 14677999998
Q ss_pred --CCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 357 --ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 357 --~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
+.......+.+.|... |+ .+..+ +...+.+||++. ...+++.++.+.+
T Consensus 393 ~~~~~~~~~~~~~~l~~~---Gv-~v~~~-------------------------~~~~~~iRi~~~-~~~t~e~i~~~l~ 442 (451)
T 3oks_A 393 TEPDADLTKALCAGAHAA---GV-IVLSC-------------------------GTYGNVVRFLPP-LSIGDDLLNEGLD 442 (451)
T ss_dssp CCBCHHHHHHHHHHHHHT---TE-ECEEE-------------------------CTTSCEEEECCC-TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC---Cc-EEecC-------------------------CCCCCEEEEECC-CCCCHHHHHHHHH
Confidence 3344566777777652 32 32222 112367999988 7666676766666
Q ss_pred HHHHh
Q 013210 435 ALSRM 439 (447)
Q Consensus 435 al~~~ 439 (447)
+|+++
T Consensus 443 ~l~~~ 447 (451)
T 3oks_A 443 VLEEV 447 (451)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=209.41 Aligned_cols=251 Identities=13% Similarity=0.175 Sum_probs=168.8
Q ss_pred CCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHh--cCCCCeEEEeCCCchhHHHHHHhhc---------CcccC
Q 013210 97 FNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFF---------PRACN 164 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~---------~~~~g 164 (447)
..+...++++.+++++ +.+.++||+||++|+.++++.. +..+++||+.++.|++......... +...|
T Consensus 94 ~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g 173 (434)
T 2epj_A 94 PGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAG 173 (434)
T ss_dssp CCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTT
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCC
Confidence 5667789999999999 7888999999999999999862 3446789999999987543220000 11123
Q ss_pred e------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013210 165 I------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 165 ~------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~ 232 (447)
+ .+..++.+|+++|++++++ +++++|++++++|++|.+.| +++|.++|++||+++|+||+|+++....
T Consensus 174 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~ 253 (434)
T 2epj_A 174 VPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGL 253 (434)
T ss_dssp CCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSST
T ss_pred CCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCc
Confidence 2 3555666799999999843 47889999988889999988 9999999999999999999997663211
Q ss_pred ------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 233 ------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 233 ------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
.....|++ |+||.+++ |.++ |++++++++++.+..... ...+..++.+...++..++..++. ....+
T Consensus 254 ~~~~~~~~~~~di~--s~sK~l~~-G~~~-G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~-~~~~~ 328 (434)
T 2epj_A 254 EGAQGYFNIEGDII--VLGKIIGG-GFPV-GAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE-EPVYS 328 (434)
T ss_dssp THHHHHHTCCCSEE--EEEGGGGT-TSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-SCHHH
T ss_pred chhhHHhCCCCCee--eecchhcC-Ccce-eeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-cCHHH
Confidence 11235654 68899997 8887 999999988776653111 011122222333333333322211 22456
Q ss_pred HHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------------HHHHHHHHH
Q 013210 305 EHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKANRLMN 367 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------------~~~~~~l~~ 367 (447)
+..++++++.+.|++. +.....+ +.|.++++.++. ......+.+
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (434)
T 2epj_A 329 VSREAAKALEEAASEVLDRTGLPYTIN-------------------RVESMMQLFIGVEEVSNAAQARKADKKFYVKLHE 389 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEE-------------------EETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEE-------------------EeeeEEEEEEeCCCcccchhccccCHHHHHHHHH
Confidence 6777778888887654 3311111 357799999974 234566777
Q ss_pred Hhhc
Q 013210 368 YLQN 371 (447)
Q Consensus 368 ~l~~ 371 (447)
.|..
T Consensus 390 ~l~~ 393 (434)
T 2epj_A 390 EMLR 393 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=205.96 Aligned_cols=204 Identities=11% Similarity=0.113 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHh--------cCCCCeEEEeCCCchhHHHHHHhhcCcccC
Q 013210 101 VLNLSRQMAALEG--------TEAAYCTASGMSAISSVLMQL--------CSSGGHVVAARTLYGGTHALLTHFFPRACN 164 (447)
Q Consensus 101 ~~~l~~~ia~l~g--------~~~~~~tsggt~A~~~al~~l--------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g 164 (447)
..++|+.||++++ .+.+++|+|+++|+.+++.++ +++||+|+++.|.|+++...+.. .|
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~-----~g 176 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKY-----FD 176 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHH-----SC
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHH-----cC
Confidence 4789999999875 356999999999999999999 89999999999999998887742 34
Q ss_pred eeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccC--CCCeEEEe
Q 013210 165 ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPAR--LGADVVVH 242 (447)
Q Consensus 165 ~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~--~g~di~~~ 242 (447)
.++..+. .|+++|++++ ++++++|++++||||||.+.+ + + ++ ++..+.|+++..-...+.. .+.++++.
T Consensus 177 ~~~~~~~-~d~~~l~~~~-~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~ 247 (427)
T 2hox_A 177 KKGYVWA-GNAANYVNVS-NPEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYTPIKYKADEDILLF 247 (427)
T ss_dssp BTTEEEE-EEGGGGTTCS-CGGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTSCCCSCBCCSEEEE
T ss_pred Ceeeeec-CCHHHHHHhh-cCCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCCccccCCCceEEEE
Confidence 4433322 2677888888 667999999999999999999 4 2 32 5678899887321111122 46899999
Q ss_pred CCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-----------C-CcHHHHHHHHHHH
Q 013210 243 SISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-----------I-PHLGLRMKEHCHR 309 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-----------~-~~l~~~~~~~~~~ 309 (447)
|+||.+|++|.|+ ||++. ++++++.+...+... ....+.+.+.++..++.. . +.+....+++.++
T Consensus 248 S~SK~~g~~G~Ri-G~~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (427)
T 2hox_A 248 TMSKFTGHSGSRF-GWALIKDESVYNNLLNYMTKN-TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRER 325 (427)
T ss_dssp EHHHHTSCGGGCC-EEEEECCHHHHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHH
T ss_pred eChhcCCCCCceE-EEEEECCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHH
Confidence 9999999999999 99988 589998888766521 112233333343333332 1 2344566778889
Q ss_pred HHHHHHHHHhC
Q 013210 310 ALIFARRMKKL 320 (447)
Q Consensus 310 ~~~l~~~L~~~ 320 (447)
++++.+.|++.
T Consensus 326 ~~~l~~~L~~~ 336 (427)
T 2hox_A 326 WVNITALLDQS 336 (427)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHhC
Confidence 99999999887
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=203.99 Aligned_cols=218 Identities=17% Similarity=0.176 Sum_probs=154.7
Q ss_pred CCCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhcC--CCCeEEEeCCCchhHHHHHHhh---------cCccc
Q 013210 96 HFNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FPRAC 163 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~---------~~~~~ 163 (447)
+.++...++++++++++ +.+.++||+||++|+..+++.+.. .+++|++..+.|++........ .+...
T Consensus 90 ~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 169 (429)
T 3k28_A 90 APTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSP 169 (429)
T ss_dssp SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCT
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcC
Confidence 34677789999999998 578899999999999999987653 5679999999998654322000 00001
Q ss_pred C------eeEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013210 164 N------ITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS 231 (447)
Q Consensus 164 g------~~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~ 231 (447)
+ ..+..++.+|+++|+++++. +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|.++ ..
T Consensus 170 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~ 248 (429)
T 3k28_A 170 GVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RV 248 (429)
T ss_dssp TCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TS
T ss_pred CCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-cc
Confidence 1 14555666799999998842 56889999999999999988 999999999999999999999765 22
Q ss_pred c-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHH
Q 013210 232 P-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLR 302 (447)
Q Consensus 232 ~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~ 302 (447)
. .....|++ |+||.+++ |.++ |++++++++++.+..... ...+..++.+++.++..++...+ .+.
T Consensus 249 g~~~~~~~~~~~~di~--t~sK~~~~-G~~i-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~--~~~ 322 (429)
T 3k28_A 249 AYNCGQGYYGVTPDLT--CLGKVIGG-GLPV-GAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT--PES 322 (429)
T ss_dssp STTHHHHHHTCCCSEE--EECGGGGT-TSCC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC--HHH
T ss_pred CcchHHHHhCCCCcee--hhhhhhcC-CCCe-EEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH--HHH
Confidence 1 11234554 58899985 8898 899999998877654221 11123333344444444554444 556
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 013210 303 MKEHCHRALIFARRMKKL 320 (447)
Q Consensus 303 ~~~~~~~~~~l~~~L~~~ 320 (447)
.+++.++++++.+.|++.
T Consensus 323 ~~~~~~~~~~l~~~L~~~ 340 (429)
T 3k28_A 323 YVEFERKAEMLEAGLRKA 340 (429)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677888888888888764
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.8e-23 Score=205.85 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=122.1
Q ss_pred CCCchHHHHHHHHHHHhCCCe-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC--
Q 013210 96 HFNPTVLNLSRQMAALEGTEA-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-- 172 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~~~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-- 172 (447)
.......++++.+|+ +|++. +++|+|+++|+.+++++++++||+|+++.++|+++...+.. .|.++.+++.
T Consensus 54 ~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~-----~G~~~~~v~~~~ 127 (446)
T 2x3l_A 54 HPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDI-----SQQEGHFIETHQ 127 (446)
T ss_dssp SCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHH-----HTCCEEECEEEE
T ss_pred CcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHH-----cCCeEEEEeCee
Confidence 345677899999999 99864 78899999999999999999999999999999999887732 4666666554
Q ss_pred C---------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-C-----CCCccCCCC
Q 013210 173 S---------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-L-----VLSPARLGA 237 (447)
Q Consensus 173 ~---------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~-----~~~~~~~g~ 237 (447)
+ |+++| + .+++++|++++ .|++|.+.|+++|.++|++||+++|+|++|+. + ..+...+++
T Consensus 128 ~~~~~~~~~~d~~~l---~-~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~ 202 (446)
T 2x3l_A 128 SPLTNHYNKVNLSRL---N-NDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQA 202 (446)
T ss_dssp CTTTSSEEEEEC-----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTC
T ss_pred ccccCcCCCCCHHHH---c-CCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCC
Confidence 2 45555 4 66899999999 55699999999999999999999999999953 3 223345588
Q ss_pred eEEEeCCCccccCCCCeeEEEEEcChHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCGPANLVN 267 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~~~~~~~ 267 (447)
|+++.|+||+++++.. + |+++.++++++
T Consensus 203 Di~~~S~~K~l~~~~g-~-g~l~~~~~~i~ 230 (446)
T 2x3l_A 203 DYVVQSFHKTLPALTM-G-SVLYIHKNAPY 230 (446)
T ss_dssp SEEEECHHHHSSSCTT-C-EEEEEETTCTT
T ss_pred CEEEECCccccccccc-c-EEEEEcCCcCC
Confidence 9999999996554322 4 88887766544
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-22 Score=199.78 Aligned_cols=294 Identities=11% Similarity=0.102 Sum_probs=187.5
Q ss_pred CCCCchHHHHHHHHHHHhCCC-eEEEeCChHHHHHHHHHHhc-----C---CCCeEEEeCCCchhHHHHHHhhcCc----
Q 013210 95 RHFNPTVLNLSRQMAALEGTE-AAYCTASGMSAISSVLMQLC-----S---SGGHVVAARTLYGGTHALLTHFFPR---- 161 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~~-~~~~tsggt~A~~~al~~l~-----~---~gd~Vi~~~~~y~~~~~~~~~~~~~---- 161 (447)
.+..+...+++++++++.+.+ .++||+||++|+..+++.+. . ++++|++..+.|+++..........
T Consensus 87 ~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 166 (452)
T 3n5m_A 87 SQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRR 166 (452)
T ss_dssp TSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGT
T ss_pred ccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhc
Confidence 345677789999999998752 39999999999999998876 4 6789999999998865433211000
Q ss_pred ----ccCeeEEEeCC--------CC---------HHHHHHhhc---cCCceEEEEEcC-CCCCccccC----HHHHHHHH
Q 013210 162 ----ACNITTTFVDI--------SD---------HEMVNSAIV---QGRTKVLYFESI-SNPTLAVAN----IPELSRLA 212 (447)
Q Consensus 162 ----~~g~~~~~v~~--------~d---------~~~l~~~i~---~~~t~lV~i~~~-~NptG~v~~----l~~I~~la 212 (447)
.....+.+++. +| +++|+++++ .+++++|+++++ +| +|.+.+ +++|.++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~ 245 (452)
T 3n5m_A 167 YQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETC 245 (452)
T ss_dssp TTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHH
T ss_pred cccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHH
Confidence 01112344432 23 899999984 267889999999 89 998886 99999999
Q ss_pred HhcCCEEEEeCCCCCCCCC-----ccCCC--CeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHH---Hhh--hhhhh
Q 013210 213 HDKGVTVVVDNTFSPLVLS-----PARLG--ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD---LHQ--GALML 279 (447)
Q Consensus 213 ~~~gi~livD~~~~~~~~~-----~~~~g--~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~---~~~--~~~~~ 279 (447)
++||+++|+||+|+++... ....+ .|++ +++|.+++ | .++ |++++++++++.+.. .+. ...+.
T Consensus 246 ~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~i-g~~~~~~~i~~~~~~~~~~~~~~~~~t~ 321 (452)
T 3n5m_A 246 QKHGALLISDEVICGFGRTGKAFGFMNYDVKPDII--TMAKGITS-AYLPL-SATAVKREIYEAFKGKGEYEFFRHINTF 321 (452)
T ss_dssp HHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSSCC-EEEEEEHHHHGGGCSSSTTCSCCCCCSS
T ss_pred HHcCCEEEEecchhCCCcccccchhhhcCCCCCEE--eecccccC-CCcce-EEEEECHHHHHHHhhccCCCCccccCCC
Confidence 9999999999999655321 11223 4555 58899997 8 898 889999998877743 111 11122
Q ss_pred cCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 280 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 280 ~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
.++.+++.++..++..++. ....++..++.+++.+.|++. +.....+ +.|.++++.
T Consensus 322 ~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~ 381 (452)
T 3n5m_A 322 GGNPAACALALKNLEIIEN-ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIR-------------------GKGLLVGIE 381 (452)
T ss_dssp TTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE-------------------ESSSCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-------------------EEEEEEEEE
Confidence 3333333333333332211 123455666666666666543 2211111 356688888
Q ss_pred eCC---------HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013210 356 MET---------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 426 (447)
Q Consensus 356 l~~---------~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~ 426 (447)
+.. .+....+.+.|... | +.+..++.. . +..++.|||+++ ...++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~~---G-v~~~~~~~~------~---------------~~~~~~iRi~~~-~~~t~ 435 (452)
T 3n5m_A 382 LVNDKETKEPIDNDKIASVVNACKEK---G-LIIGRNGMT------T---------------AGYNNILTLAPP-LVISS 435 (452)
T ss_dssp EEEETTTTEECCHHHHHHHHHHHHHT---T-EECEECTTS------S---------------TTCCCEEEECCC-TTCCH
T ss_pred EecCCcccCCCCHHHHHHHHHHHHHC---C-cEEeecCcc------c---------------CCCCCEEEEECC-CCCCH
Confidence 731 22344566666642 3 233322110 0 012578999988 77777
Q ss_pred HHHHHHHHHHHHh
Q 013210 427 QRWSQFEKALSRM 439 (447)
Q Consensus 427 ~~i~~l~~al~~~ 439 (447)
+.++.+.++|+++
T Consensus 436 e~i~~~l~~l~~~ 448 (452)
T 3n5m_A 436 EEIAFVIGTLKTA 448 (452)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777655
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-22 Score=203.70 Aligned_cols=294 Identities=11% Similarity=0.095 Sum_probs=194.7
Q ss_pred CCchHHHHHH----HHHHHhCCC----eEEEeCChHHHHHHHHHHhcC--------------CCCeEEEeCCCchhHHHH
Q 013210 97 FNPTVLNLSR----QMAALEGTE----AAYCTASGMSAISSVLMQLCS--------------SGGHVVAARTLYGGTHAL 154 (447)
Q Consensus 97 ~~~~~~~l~~----~ia~l~g~~----~~~~tsggt~A~~~al~~l~~--------------~gd~Vi~~~~~y~~~~~~ 154 (447)
..+...++|+ .+++++|.+ .++||+|||+|+..++.++.. +++.|+++...|.++...
T Consensus 129 ~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~ 208 (511)
T 3vp6_A 129 IAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKA 208 (511)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHH
Confidence 4555555555 456667765 589999999999999887654 466899999999999887
Q ss_pred HHhhcCcccCe---eEEEeCCC-----CHHHHHHhhccCC------ceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEE
Q 013210 155 LTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQGR------TKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 220 (447)
Q Consensus 155 ~~~~~~~~~g~---~~~~v~~~-----d~~~l~~~i~~~~------t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~li 220 (447)
+. . .|. +++.++.+ |+++|+++| +++ +++|++++++|++|.+.|+++|+++|++||+++|
T Consensus 209 ~~-~----~g~g~~~~~~v~~d~~~~~d~~~Le~~i-~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lh 282 (511)
T 3vp6_A 209 GA-A----LGFGTDNVILIKCNERGKIIPADFEAKI-LEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH 282 (511)
T ss_dssp HH-H----TTSCGGGEEEECBCTTSCBCHHHHHHHH-HHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEE
T ss_pred HH-H----cCCCCCcEEEeecCCCCccCHHHHHHHH-HHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEE
Confidence 73 2 344 77777765 899999999 433 8899999999999999999999999999999999
Q ss_pred EeCCCCC-CCCCc----c--C-CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhh--------------
Q 013210 221 VDNTFSP-LVLSP----A--R-LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM-------------- 278 (447)
Q Consensus 221 vD~~~~~-~~~~~----~--~-~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~-------------- 278 (447)
+|++|+. ....+ . . .++|+++.++||+++.+.. .|++++.+++++.........+..
T Consensus 283 vD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~ 361 (511)
T 3vp6_A 283 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ-CSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGD 361 (511)
T ss_dssp EEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC-CEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGG
T ss_pred EEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcC-eEEEEEeCHHHHHHHhccCCccccCcccccccccCccC
Confidence 9999943 22221 1 1 2579999999999987643 434445566555544221111100
Q ss_pred ---hcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 279 ---LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 279 ---~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
..+........+..++ +.+.+.+++++..++++++.+.|++.+ +++..+..+ ..+++
T Consensus 362 ~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p-----------------~~~~v 424 (511)
T 3vp6_A 362 KAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP-----------------EHTNV 424 (511)
T ss_dssp GSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCC-----------------SSSCE
T ss_pred CCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCC-----------------CeEEE
Confidence 0111122333343333 335577788899999999999999874 466542111 23367
Q ss_pred EEEeCCH---------H-------HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEE
Q 013210 353 CLDMETE---------E-------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 416 (447)
Q Consensus 353 ~~~l~~~---------~-------~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iR 416 (447)
+|.+... . ....+.+.|... |.+.++.. +. +-..+++|
T Consensus 425 ~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---G~~~~~~~--------~~---------------~~~~~~lR 478 (511)
T 3vp6_A 425 CFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES---GTTMVGYQ--------PQ---------------GDKANFFR 478 (511)
T ss_dssp EEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH---TSCEEEEE--------EE---------------TTEEEEEE
T ss_pred EEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc---CCEEEEEE--------Ee---------------CCceEEEE
Confidence 7765311 1 123455666542 32222211 00 01124799
Q ss_pred EEe-CCCCCHHHHHHHHHHHHHHhhh
Q 013210 417 MSV-GYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 417 iS~-g~~~~~~~~i~~l~~al~~~~~ 441 (447)
|++ + ..++++.|+.+.++|+++.+
T Consensus 479 i~~~~-~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 479 MVISN-PAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp ECCCC-TTCCHHHHHHHHHHHHHHHC
T ss_pred EEecC-CCCCHHHHHHHHHHHHHHHH
Confidence 999 5 78888889999888887754
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=202.61 Aligned_cols=219 Identities=13% Similarity=0.120 Sum_probs=137.5
Q ss_pred CCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC----CC----CeEEEeCCCchhHHHHHHhhcCc---
Q 013210 95 RHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLCS----SG----GHVVAARTLYGGTHALLTHFFPR--- 161 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~~----~g----d~Vi~~~~~y~~~~~~~~~~~~~--- 161 (447)
.+..+...+++++++++.+ .+.++||+||++|+..+++.+.. +| ++|++..+.|++...........
T Consensus 83 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 162 (448)
T 3dod_A 83 GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELF 162 (448)
T ss_dssp SSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-------------------
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccc
Confidence 3456777899999999984 46799999999999999988764 44 89999999998865333111000
Q ss_pred -----ccCeeEEEeCCC----------------CHHHHHHhhc--cCCceEEEEEcCC-CCCccccC----HHHHHHHHH
Q 013210 162 -----ACNITTTFVDIS----------------DHEMVNSAIV--QGRTKVLYFESIS-NPTLAVAN----IPELSRLAH 213 (447)
Q Consensus 162 -----~~g~~~~~v~~~----------------d~~~l~~~i~--~~~t~lV~i~~~~-NptG~v~~----l~~I~~la~ 213 (447)
.....+..++.. |+++|+++++ .+++++|++++++ |++|.+.+ +++|.++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~ 242 (448)
T 3dod_A 163 HHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCT 242 (448)
T ss_dssp ----------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHH
T ss_pred cccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHH
Confidence 001123334433 2788999884 2568899999998 99998876 999999999
Q ss_pred hcCCEEEEeCCCCCCCCC-----ccCCC--CeEEEeCCCccccCCC-CeeEEEEEcChHHHHHHHH-------Hhhhhhh
Q 013210 214 DKGVTVVVDNTFSPLVLS-----PARLG--ADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD-------LHQGALM 278 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~~-----~~~~g--~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~-------~~~~~~~ 278 (447)
+||+++|+||+|+++... ....+ .|++ +++|.+++ | .++ |++++++++++.+.. ... ..+
T Consensus 243 ~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~--t~sK~l~~-G~~~i-g~v~~~~~~~~~~~~~~~~~~~~~~-~~t 317 (448)
T 3dod_A 243 TYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM--AAGKGITG-GYLPI-AVTFATEDIYKAFYDDYENLKTFFH-GHS 317 (448)
T ss_dssp HTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCC-EEEEEEHHHHHTTCSCGGGCCCCCC-CCT
T ss_pred HhCCEEEEeccccCCCcccchhhhhhcCCCCCEE--EecccccC-CcCce-EEEEECHHHHHHhhhccccCCcccc-cCC
Confidence 999999999999655321 11223 4555 57899986 7 598 899999998887754 211 112
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK 319 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~ 319 (447)
..++.+.+.++..++..++. ....++..++.+++.+.|++
T Consensus 318 ~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~ 357 (448)
T 3dod_A 318 YTGNQLGCAVALENLALFES-ENIVEQVAEKSKKLHFLLQD 357 (448)
T ss_dssp TTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHH
Confidence 23333333333333332211 12344555666666666654
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=204.81 Aligned_cols=287 Identities=15% Similarity=0.148 Sum_probs=184.4
Q ss_pred CCCCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc---C-----------CCCeEEEeCCCchhHHHHHHh
Q 013210 95 RHFNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLC---S-----------SGGHVVAARTLYGGTHALLTH 157 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~---~-----------~gd~Vi~~~~~y~~~~~~~~~ 157 (447)
++..+...++++.++++++ .+.++||+||++|++.+++.+. . +|++||+..+.||+.......
T Consensus 97 ~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~ 176 (449)
T 2cjg_A 97 DVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLS 176 (449)
T ss_dssp TCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGG
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhh
Confidence 3456667899999999984 4679999999999999997543 2 288999999999875432211
Q ss_pred h----------cCcccCeeEEEeCCCC--H-------------HHHHHhhc--cCCceEEEEEcCCCCCccccC----HH
Q 013210 158 F----------FPRACNITTTFVDISD--H-------------EMVNSAIV--QGRTKVLYFESISNPTLAVAN----IP 206 (447)
Q Consensus 158 ~----------~~~~~g~~~~~v~~~d--~-------------~~l~~~i~--~~~t~lV~i~~~~NptG~v~~----l~ 206 (447)
. ... ....+.+++.+| . ++|+++++ .+++++|++++++||+|.+.+ ++
T Consensus 177 ~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 255 (449)
T 2cjg_A 177 LTNTKPTITARFPK-FDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA 255 (449)
T ss_dssp TCCSCHHHHTTSCC-CCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred hcCCchhhcccCCC-CCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence 0 000 122566666555 2 33888773 267899999998999998776 99
Q ss_pred HHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH-----Hhh
Q 013210 207 ELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-----LHQ 274 (447)
Q Consensus 207 ~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-----~~~ 274 (447)
+|.++|++||+++|+||+|+++.... .....|++ |++|.+ ++ |++++++++++.+.. ...
T Consensus 256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l-----~i-G~~~~~~~~~~~l~~~~~~~~~~ 327 (449)
T 2cjg_A 256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT-----QV-CGVMAGRRVDEVADNVFAVPSRL 327 (449)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG-----SS-EEEEECGGGGGSTTCTTTSTTSS
T ss_pred HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc-----cE-EEEEECHHHhhhhhhcccCCccc
Confidence 99999999999999999997653221 12245665 578998 36 888888888765321 111
Q ss_pred hhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CCCCchhHHHHHHhccCCCcCcEEE
Q 013210 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 275 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~-~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..+..++.+.+.++..++..+.. ....++..++++++.+.|++.... +|. +... .+.|.+++
T Consensus 328 -~~t~~~n~~~~~aa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~--~~~~~~~~-------------~~~g~~~~ 390 (449)
T 2cjg_A 328 -NSTWGGNLTDMVRARRILEVIEA-EGLFERAVQHGKYLRARLDELAAD--FPAVVLDP-------------RGRGLMCA 390 (449)
T ss_dssp -CCSSSSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH--STTTSEEE-------------EEETTEEE
T ss_pred -ccCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhh--CCCceeeE-------------eeccEEEE
Confidence 11122333333333333332211 234566778888888888753100 111 0000 03577999
Q ss_pred EEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 354 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
+.+++......+.+.|... | +.+..+ | .+.||||++ ...+++.++.+.
T Consensus 391 ~~~~~~~~~~~~~~~l~~~---G-v~v~~~-------------------------g--~~~iRi~~~-~~~t~e~i~~~l 438 (449)
T 2cjg_A 391 FSLPTTADRDELIRQLWQR---A-VIVLPA-------------------------G--ADTVRFRPP-LTVSTAEIDAAI 438 (449)
T ss_dssp EECSSHHHHHHHHHHHHHT---T-EECEEE-------------------------T--TTEEEECCC-TTCCHHHHHHHH
T ss_pred EEECChHHHHHHHHHHHHC---C-eEEecC-------------------------C--CCEEEEECC-CCCCHHHHHHHH
Confidence 9998654456777777642 3 233222 1 378999988 767777777777
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
++|+++
T Consensus 439 ~~l~~~ 444 (449)
T 2cjg_A 439 AAVRSA 444 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=203.62 Aligned_cols=251 Identities=16% Similarity=0.208 Sum_probs=163.1
Q ss_pred CCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHh---------hcCcc--
Q 013210 97 FNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTH---------FFPRA-- 162 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~---------~~~~~-- 162 (447)
.++...++++++++++ +.+.++||+||++|++.+++... ..+++|++..+.|++....... ..+..
T Consensus 91 ~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 170 (429)
T 4e77_A 91 PTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPG 170 (429)
T ss_dssp CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTT
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCC
Confidence 5677789999999998 56789999999999999998543 3567899999999887642100 00000
Q ss_pred ----cCeeEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013210 163 ----CNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS- 231 (447)
Q Consensus 163 ----~g~~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~- 231 (447)
....+..++.+|+++|+++++. +++++|+++++++++|.+.+ +++|.++|++||+++|+||+|+++...
T Consensus 171 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~ 250 (429)
T 4e77_A 171 VPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL 250 (429)
T ss_dssp SCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT
T ss_pred CCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc
Confidence 1224556677799999999843 46788888888888888887 999999999999999999999765111
Q ss_pred ---ccCCC--CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 232 ---PARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 232 ---~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
...++ .|++ |++|.++ +|.++ |++++++++++.+..... ...+..++.+...++..++..++. ....+
T Consensus 251 ~~~~~~~~~~pdi~--t~sK~~~-~G~~~-G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~ 325 (429)
T 4e77_A 251 AGAQDYYHVIPDLT--CLGKIIG-GGMPV-GAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-VGVYE 325 (429)
T ss_dssp TCHHHHTTCCCSEE--EEEGGGG-TTSCC-EEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-TTHHH
T ss_pred chHHHhcCCCCCee--eeccccc-CCCCe-EEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-cCHHH
Confidence 11123 4654 6889999 58888 899999998877654211 111122333333333333332211 23445
Q ss_pred HHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------------HHHHHHH
Q 013210 305 EHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------------EKANRLM 366 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------------~~~~~l~ 366 (447)
+..++.+++.+.|++ ++.....+ +.|.++++.+... .....+.
T Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (429)
T 4e77_A 326 TLTELTDSLATGLRHAAKEENIPLVVN-------------------HVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFF 386 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEE-------------------EETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEE-------------------EeeeEEEEEEccCcccccccccccccHHHHHHHH
Confidence 556666666666654 33311111 4677999998742 2346677
Q ss_pred HHhhc
Q 013210 367 NYLQN 371 (447)
Q Consensus 367 ~~l~~ 371 (447)
+.|..
T Consensus 387 ~~l~~ 391 (429)
T 4e77_A 387 HLMLE 391 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-22 Score=201.02 Aligned_cols=242 Identities=10% Similarity=0.069 Sum_probs=163.7
Q ss_pred HHHHHHHHHhCCC-----------eEEEeCChHHHHHHHHHHhcCC---------CC--------e--EEEeCCCchhHH
Q 013210 103 NLSRQMAALEGTE-----------AAYCTASGMSAISSVLMQLCSS---------GG--------H--VVAARTLYGGTH 152 (447)
Q Consensus 103 ~l~~~ia~l~g~~-----------~~~~tsggt~A~~~al~~l~~~---------gd--------~--Vi~~~~~y~~~~ 152 (447)
++.+.+++++|.+ .+++|+|||+|+..++.++..+ || + |+++.+.|+++.
T Consensus 117 ~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~ 196 (486)
T 1js3_A 117 VMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE 196 (486)
T ss_dssp HHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH
T ss_pred HHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHH
Confidence 3445567777875 3799999999999998775321 42 3 788999999988
Q ss_pred HHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCc------eEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEE
Q 013210 153 ALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRT------KVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 221 (447)
Q Consensus 153 ~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t------~lV~i~~~~NptG~v~~l~~I~~la~~~gi~liv 221 (447)
..+. ..|++++.++.+ |+++|++++ ++++ .+|++++++|++|.+.|+++|+++|++||+++|+
T Consensus 197 ~~~~-----~~G~~v~~v~~d~~~~~d~~~L~~~i-~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhv 270 (486)
T 1js3_A 197 RAGL-----IGGVKLKAIPSDGKFAMRASALQEAL-ERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHV 270 (486)
T ss_dssp HHHH-----HHTCEEEEECCCTTSCCCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEE
T ss_pred HHHH-----hCCCceEEeecCCCCCCCHHHHHHHH-HHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEE
Confidence 7763 258888888874 899999999 5445 3889999999999999999999999999999999
Q ss_pred eCCCCCCCC-C--cc----C-CCCeEEEeCCCccccCCCCeeEEEEEcC-hHH-HHHHH---HHh-hhhh----------
Q 013210 222 DNTFSPLVL-S--PA----R-LGADVVVHSISKFISGGADIIAGAVCGP-ANL-VNSMM---DLH-QGAL---------- 277 (447)
Q Consensus 222 D~~~~~~~~-~--~~----~-~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~-~~~l~---~~~-~~~~---------- 277 (447)
|++|+...+ . .. . .++|+++.|+||+++++ ..+ |+++.+ +.. .+.+. .+. ....
T Consensus 271 D~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~-G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~ 348 (486)
T 1js3_A 271 DAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDC-SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRH 348 (486)
T ss_dssp ECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSC-EEEEESCHHHHHGGGC------------CCSCCCGGG
T ss_pred ehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cce-EEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccc
Confidence 999954321 1 11 1 26899999999999976 345 777654 443 23221 000 0000
Q ss_pred --hhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 278 --MLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 278 --~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
...+........+.++. +.+.+.+.+++..++++++.+.|++.+ +++..+. .++++
T Consensus 349 ~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-------------------~~~~v 409 (486)
T 1js3_A 349 WQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-------------------TLGLV 409 (486)
T ss_dssp SSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-------------------CSSEE
T ss_pred cCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-------------------ceeEE
Confidence 00111122233333222 334566778888999999999999874 4554331 23488
Q ss_pred EEEeCC-HHHHHHHHHHhhc
Q 013210 353 CLDMET-EEKANRLMNYLQN 371 (447)
Q Consensus 353 ~~~l~~-~~~~~~l~~~l~~ 371 (447)
+|.+++ ......+.+.|..
T Consensus 410 ~f~~~~~~~~~~~l~~~L~~ 429 (486)
T 1js3_A 410 CFRLKGSDGLNEALLERINS 429 (486)
T ss_dssp EEEESSCHHHHHHHHHHHHH
T ss_pred EEEecChHHHHHHHHHHHHh
Confidence 898864 2224667777764
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=200.65 Aligned_cols=223 Identities=14% Similarity=0.078 Sum_probs=154.1
Q ss_pred hHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc-------C-CCC------eEEEeCCCchhHHHHHHhhcCccc
Q 013210 100 TVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLC-------S-SGG------HVVAARTLYGGTHALLTHFFPRAC 163 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~-------~-~gd------~Vi~~~~~y~~~~~~~~~~~~~~~ 163 (447)
..+++++.+++++|.+ .++||+|||+|+.+++.++. + +|+ .|+++...|+++...+. ... .
T Consensus 149 le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~-~~g--~ 225 (515)
T 2jis_A 149 MEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAA-FLG--L 225 (515)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTT--S
T ss_pred HHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHH-HcC--C
Confidence 3456778899999975 69999999999999988763 2 465 89999999999887773 221 2
Q ss_pred Ce-eEEEeCCC-----CHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC--
Q 013210 164 NI-TTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-- 230 (447)
Q Consensus 164 g~-~~~~v~~~-----d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-- 230 (447)
|. +++.++.+ |+++|++++... ++++|++++++|++|.+.|+++|+++|+++|+++|+|++|+....
T Consensus 226 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~ 305 (515)
T 2jis_A 226 GTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLS 305 (515)
T ss_dssp CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGC
T ss_pred CCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhC
Confidence 33 77778764 899999998321 489999999999999999999999999999999999999944322
Q ss_pred C-----ccCC-CCeEEEeCCCccccCCCCeeEEEEEcChH--HHHHHH----HHhhhhhh------h-------cCCCcc
Q 013210 231 S-----PARL-GADVVVHSISKFISGGADIIAGAVCGPAN--LVNSMM----DLHQGALM------L-------LGPTMN 285 (447)
Q Consensus 231 ~-----~~~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~--~~~~l~----~~~~~~~~------~-------~g~~~~ 285 (447)
+ ...+ ++|+++.|+||+++++.. + |+++.+++ +++... .+..+... . .+-...
T Consensus 306 ~~~~~~~~g~~~aD~v~~s~hK~l~~p~g-~-G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~ 383 (515)
T 2jis_A 306 QTHRHLLDGIQRADSVAWNPHKLLAAGLQ-C-SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVD 383 (515)
T ss_dssp TTTGGGGTTGGGCSEEEECTTSTTCCCSC-C-EEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCC
T ss_pred hhhHhhcCCCccCCEEEECcccccCCCCC-e-eEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCccc
Confidence 1 1123 689999999999986543 5 77766544 655421 11100000 0 000111
Q ss_pred HHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCC
Q 013210 286 PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYP 327 (447)
Q Consensus 286 ~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p 327 (447)
....++.++ +...+.+..++..++++++.+.|++.+ +++..+
T Consensus 384 al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~ 428 (515)
T 2jis_A 384 CLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVME 428 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 222222222 223455677788899999999999874 455543
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=203.45 Aligned_cols=236 Identities=14% Similarity=0.117 Sum_probs=149.9
Q ss_pred CCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHH---hcCCCCeEEEeCCCchhHHHHHHhhc------CcccCe-
Q 013210 97 FNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQ---LCSSGGHVVAARTLYGGTHALLTHFF------PRACNI- 165 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~---l~~~gd~Vi~~~~~y~~~~~~~~~~~------~~~~g~- 165 (447)
..+...++.+.+++.. +.+.++||+||++|+.++++. +.. +++||+.++.|+++........ +...|+
T Consensus 95 ~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~ 173 (453)
T 2cy8_A 95 SHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVL 173 (453)
T ss_dssp SCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC--------------------------
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCC
Confidence 4556667777777776 677899999999999999987 444 5689999999987654331100 110133
Q ss_pred -----eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc--
Q 013210 166 -----TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-- 232 (447)
Q Consensus 166 -----~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-- 232 (447)
.+..++.+|+++|++++++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++....
T Consensus 174 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~ 253 (453)
T 2cy8_A 174 PETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHG 253 (453)
T ss_dssp --CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTH
T ss_pred ccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchh
Confidence 3555666799999998842 47889988888888999887 9999999999999999999997662211
Q ss_pred ----cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHH---Hh-hhhhhhcCCCccHHHHHHHHcc-CCcHHHHH
Q 013210 233 ----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD---LH-QGALMLLGPTMNPKVAFELSER-IPHLGLRM 303 (447)
Q Consensus 233 ----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~---~~-~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~ 303 (447)
.....|++ |++|.+++ |.++ |++++++++++.+.. .. ....+..++.+.+.++..++.. + .....
T Consensus 254 ~~~~~~~~~di~--s~sK~l~~-G~~~-G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~--~~~~~ 327 (453)
T 2cy8_A 254 MQALLDVQPDLT--CLAKASAG-GLPG-GILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL--EDDVC 327 (453)
T ss_dssp HHHHHTCCCSEE--EEEGGGGT-TSSC-EEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH--HTTHH
T ss_pred hhHHhCCCCcEE--EEChhhhC-Ccce-EEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh--hhhHH
Confidence 12235655 68899996 7887 999999988776643 10 0011122333333333333332 2 12345
Q ss_pred HHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 304 KEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
+++.++++++.+.|++. +.....+ +.|.++++.++.
T Consensus 328 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~ 367 (453)
T 2cy8_A 328 AKINDLGQFAREAMNHLFARKGLNWLAY-------------------GRFSGFHLMPGL 367 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEE-------------------CCTTEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcEEEE-------------------EeeeEEEEEEec
Confidence 66777778888877653 3311111 357799999974
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-22 Score=200.03 Aligned_cols=317 Identities=14% Similarity=0.064 Sum_probs=185.9
Q ss_pred CCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCC-----C----Ce
Q 013210 71 MEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSS-----G----GH 140 (447)
Q Consensus 71 ~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~-----g----d~ 140 (447)
+.+ +.+.+.+.. +...|+ ..+...++++++|++++.+.++||+||++|+++++++++.+ | |+
T Consensus 53 ~~v~~a~~~~l~~------~~~~y~--~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~ 124 (467)
T 2oqx_A 53 GAVTQSMQAAMMR------GDEAYS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKM 124 (467)
T ss_dssp SCCCHHHHHHTTS------CCCCSS--SCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTC
T ss_pred HHHHHHHHHHhcc------Ccceec--cCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccce
Confidence 555 666666532 112343 24566889999999999999999999999999999998877 8 99
Q ss_pred EEEeCCCchhH-HHHHHhhcCcccCeeEEE------eC------C---CCHHHHHHhhcc---CCceEEEEEcCCCCC-c
Q 013210 141 VVAARTLYGGT-HALLTHFFPRACNITTTF------VD------I---SDHEMVNSAIVQ---GRTKVLYFESISNPT-L 200 (447)
Q Consensus 141 Vi~~~~~y~~~-~~~~~~~~~~~~g~~~~~------v~------~---~d~~~l~~~i~~---~~t~lV~i~~~~Npt-G 200 (447)
|+++ ..|..+ .... .. .|..+.. ++ . .|+++|++++.+ ++|++|++++|+||+ |
T Consensus 125 Ii~~-~~h~~t~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG 198 (467)
T 2oqx_A 125 VAFS-NYFFDTTQGHS-QI----NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGG 198 (467)
T ss_dssp EEEE-SSCCHHHHHHH-HH----TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGC
T ss_pred EEec-ccccccchhhh-hc----cCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCC
Confidence 8887 444332 2222 11 1222211 11 1 289999999942 479999999999998 7
Q ss_pred cccC---HHHHHHHHHhcCCEEEEeCCCCC-------------CCCCccC------CCCeEEEeCCCccccCCCCeeEEE
Q 013210 201 AVAN---IPELSRLAHDKGVTVVVDNTFSP-------------LVLSPAR------LGADVVVHSISKFISGGADIIAGA 258 (447)
Q Consensus 201 ~v~~---l~~I~~la~~~gi~livD~~~~~-------------~~~~~~~------~g~di~~~S~sK~~g~~g~~igG~ 258 (447)
.+.+ +++|+++|++||+++|+|+++.. ...++.. ...|+++.|+||++|++ +||+
T Consensus 199 ~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~ 275 (467)
T 2oqx_A 199 QPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGL 275 (467)
T ss_dssp BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEE
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---CceE
Confidence 7764 78999999999999999977621 1112211 23678899999999865 4588
Q ss_pred EEcChH-HHHHHHHHhhh----hhhhcCCCccHHHHHHHHccCC-cH-HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCC
Q 013210 259 VCGPAN-LVNSMMDLHQG----ALMLLGPTMNPKVAFELSERIP-HL-GLRMKEHCHRALIFARRMKKLGLKVLYPGLED 331 (447)
Q Consensus 259 l~~~~~-~~~~l~~~~~~----~~~~~g~~~~~~~a~~~~~~~~-~l-~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~ 331 (447)
++++++ +++.+...+.. ......+.........+...++ .+ ...+++..++++++.+.|++.+..+. |.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~--- 351 (467)
T 2oqx_A 276 LCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-QA--- 351 (467)
T ss_dssp EEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-EE---
T ss_pred EEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHCCCeee-cC---
Confidence 887766 44444332221 0001111222221111111111 11 12445567788899999988765554 42
Q ss_pred CchhHHHHHHhccCCCcCcEEEEEeC----C--HHH--HHHHHHHh-hcccccccccccccCccccccccccccCCCCCH
Q 013210 332 HPHHELLKSMANKEYGFGGLLCLDME----T--EEK--ANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA 402 (447)
Q Consensus 332 ~p~~~l~~~~~~~~~g~g~~~~~~l~----~--~~~--~~~l~~~l-~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~ 402 (447)
.|.++++.+. + ... ...+.+.| ... | +.++.|+.+..-..+. ....
T Consensus 352 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g-v~~~~~~~~~~~~~~~--~g~~--- 406 (467)
T 2oqx_A 352 ----------------GGHAAFVDAGKLLPHIPADQFPAQALACELYKVA---G-IRAVEIGSFLLGRDPK--TGKQ--- 406 (467)
T ss_dssp ----------------CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHH---C-EECEEESHHHHCBCTT--TCSB---
T ss_pred ----------------CceEEEEechhhcccCCcccccHHHHHHHHHHhc---C-ceeccccccccccccc--cccc---
Confidence 2447777763 1 111 34556666 542 3 4555432211000000 0000
Q ss_pred HHHHhcCCCCCeEEEEeCCCC-CHHHHHHHHHHHHHHh
Q 013210 403 EEKALAGISAGLVRMSVGYLG-TLDQRWSQFEKALSRM 439 (447)
Q Consensus 403 ~~~~~~g~~~~~iRiS~g~~~-~~~~~i~~l~~al~~~ 439 (447)
.....+.||||++ .. .+++.++.+.++|+++
T Consensus 407 -----~~~~~~~iRl~~~-~~~~t~e~i~~~~~~l~~~ 438 (467)
T 2oqx_A 407 -----LPCPAELLRLTIP-RATYTQTHMDFIIEAFKHV 438 (467)
T ss_dssp -----CCCSCCEEEECCC-TTTSCHHHHHHHHHHHHHH
T ss_pred -----ccCccCeEEEEec-CCCCCHHHHHHHHHHHHHH
Confidence 0012378999999 77 6666666665555543
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-23 Score=205.09 Aligned_cols=218 Identities=14% Similarity=0.148 Sum_probs=147.6
Q ss_pred CCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHh---------hcCcccC
Q 013210 97 FNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTH---------FFPRACN 164 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~---------~~~~~~g 164 (447)
..+...++++.+++++ +.+.++||+||++|+..+++... ..+++||+..+.|++....... ..+...|
T Consensus 90 ~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 169 (427)
T 3fq8_A 90 PCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPG 169 (427)
T ss_dssp CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSS
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCC
Confidence 5677789999999998 46789999999999999995432 3357899999999875432200 0011112
Q ss_pred e------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013210 165 I------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS- 231 (447)
Q Consensus 165 ~------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~- 231 (447)
+ .+..++.+|+++|++++++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+++...
T Consensus 170 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~ 249 (427)
T 3fq8_A 170 VPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAY 249 (427)
T ss_dssp SCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT
T ss_pred CCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCc
Confidence 1 2556666799999999843 27899999999999999998 999999999999999999999766111
Q ss_pred -----ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHHH
Q 013210 232 -----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMK 304 (447)
Q Consensus 232 -----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~ 304 (447)
......|+ .|+||.++ +|.|+ |++++++++++.+...+. ...+..++.+...++..++..++. ....+
T Consensus 250 ~~~~~~~~~~~di--~t~sK~~~-~G~~~-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~ 324 (427)
T 3fq8_A 250 GGVQEKFGVTPDL--TTLGKIIG-GGLPV-GAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYE 324 (427)
T ss_dssp THHHHHTTCCCSE--EEECGGGG-TTSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHH
T ss_pred chhhHhcCCCCCh--hhhhhhhh-CCcce-EEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cCHHH
Confidence 11223455 46779999 58898 899999998877754221 111122233333333333332222 23445
Q ss_pred HHHHHHHHHHHHHHh
Q 013210 305 EHCHRALIFARRMKK 319 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~ 319 (447)
++.++.+++.+.|++
T Consensus 325 ~~~~~~~~~~~~l~~ 339 (427)
T 3fq8_A 325 YLDQITKRLSDGLLA 339 (427)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666654
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=201.10 Aligned_cols=292 Identities=11% Similarity=0.087 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhCCC----eEEEeCChHHHHHHHHHHhcC--------CC-----C-eEEEeCCCchhHHHHHHhhcCccc
Q 013210 102 LNLSRQMAALEGTE----AAYCTASGMSAISSVLMQLCS--------SG-----G-HVVAARTLYGGTHALLTHFFPRAC 163 (447)
Q Consensus 102 ~~l~~~ia~l~g~~----~~~~tsggt~A~~~al~~l~~--------~g-----d-~Vi~~~~~y~~~~~~~~~~~~~~~ 163 (447)
+++.+.+++++|.+ .++||+|||+|+.+++.++.. +| + .|+++.+.|+++...+. .+. .
T Consensus 135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~-~~g--~ 211 (504)
T 2okj_A 135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGA-ALG--F 211 (504)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTT--S
T ss_pred HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHH-HcC--C
Confidence 34446678888865 599999999999999988742 46 6 79999999999988773 222 2
Q ss_pred Ce-eEEEeCCC-----CHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-C
Q 013210 164 NI-TTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-S 231 (447)
Q Consensus 164 g~-~~~~v~~~-----d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-~ 231 (447)
|. +++.++.+ |+++|++++... ++++|++++++|++|.+.|+++|+++|++||+++|+|++|+.... .
T Consensus 212 g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~ 291 (504)
T 2okj_A 212 GTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMS 291 (504)
T ss_dssp CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGC
T ss_pred CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhC
Confidence 44 77788765 899999998321 589999999999999999999999999999999999999944332 1
Q ss_pred -----c-cCC-CCeEEEeCCCccccCCCCeeEEEEEcCh-HHHHHHHHHhhhhhhhcCC-----------------CccH
Q 013210 232 -----P-ARL-GADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGP-----------------TMNP 286 (447)
Q Consensus 232 -----~-~~~-g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~-----------------~~~~ 286 (447)
. ... ++|+++.|+||+++++. .+ |+++.++ +++.........+....+. ....
T Consensus 292 ~~~~~~~~g~~~~D~i~~~~hK~~~~p~-~~-g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~ 369 (504)
T 2okj_A 292 RKHRHKLNGIERANSVTWNPHKMMGVLL-QC-SAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDI 369 (504)
T ss_dssp TTTGGGGTTGGGCSEEEECTTSTTCCCS-CC-EEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCH
T ss_pred HhhHhhcCCcccCCEEEECchhhcCCCc-ce-EEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccH
Confidence 1 112 68999999999999664 35 7776654 5655432111111100000 0112
Q ss_pred HHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---
Q 013210 287 KVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE--- 360 (447)
Q Consensus 287 ~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~--- 360 (447)
...++.+. +.+.+.+..++..++++++.+.|++.+ +++..+.. | .+++++|.+....
T Consensus 370 l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~---p--------------~~~~v~f~~~~~~~~~ 432 (504)
T 2okj_A 370 FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE---P--------------EHTNVCFWYIPQSLRG 432 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSC---C--------------SSSCEEEEECCGGGSS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCC---C--------------CeEEEEEEEeCccccc
Confidence 22222222 223456677888899999999998874 46554210 1 2346777653210
Q ss_pred -------------HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013210 361 -------------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 427 (447)
Q Consensus 361 -------------~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~ 427 (447)
....+.+.|... |.+.++.+ + .+-..+.+|+|++-..++++
T Consensus 433 ~~~~~~~~~~~~~~~~~l~~~L~~~---G~~~~~~~--------~---------------~~~~~~~lRis~~~~~~t~e 486 (504)
T 2okj_A 433 VPDSPQRREKLHKVAPKIKALMMES---GTTMVGYQ--------P---------------QGDKANFFRMVISNPAATQS 486 (504)
T ss_dssp CCCCHHHHHHHTTHHHHHHHHHHHH---TSCEEEEE--------E---------------ETTEEEEEEECCCCTTCCHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHhC---CcEEEEee--------E---------------ECCceEEEEEEeCCCCCCHH
Confidence 123555666542 22121111 0 00012579999951567788
Q ss_pred HHHHHHHHHHHhhh
Q 013210 428 RWSQFEKALSRMQD 441 (447)
Q Consensus 428 ~i~~l~~al~~~~~ 441 (447)
+++.+.++|+++.+
T Consensus 487 di~~~~~~l~~~~~ 500 (504)
T 2okj_A 487 DIDFLIEEIERLGQ 500 (504)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877643
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=198.98 Aligned_cols=284 Identities=11% Similarity=0.060 Sum_probs=183.7
Q ss_pred HHHHHHHHhCC---CeEEEeCChHHHHHHHHHHh----c---------CC------CC-eEEEeCCCchhHHHHHHhhcC
Q 013210 104 LSRQMAALEGT---EAAYCTASGMSAISSVLMQL----C---------SS------GG-HVVAARTLYGGTHALLTHFFP 160 (447)
Q Consensus 104 l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l----~---------~~------gd-~Vi~~~~~y~~~~~~~~~~~~ 160 (447)
+++.+++++|. +.++||+|||+|+..++.++ + .+ |+ .|+++.+.|.++...+. .+.
T Consensus 145 ~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~-~~g 223 (497)
T 2qma_A 145 VVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSAS-WMG 223 (497)
T ss_dssp HHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHH-HTT
T ss_pred HHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHH-HcC
Confidence 45559999987 46999999999999999873 2 12 45 79999999999887763 221
Q ss_pred cccCe-eEEEeCCC-----CHHHHHHhhccC---Cce--EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCC
Q 013210 161 RACNI-TTTFVDIS-----DHEMVNSAIVQG---RTK--VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV 229 (447)
Q Consensus 161 ~~~g~-~~~~v~~~-----d~~~l~~~i~~~---~t~--lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~ 229 (447)
.|. +++.++.+ |+++|++++++. .++ +|++++++|++|.+.|+++|+++|++||+++|+|++|+...
T Consensus 224 --~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~ 301 (497)
T 2qma_A 224 --LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGAL 301 (497)
T ss_dssp --SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGG
T ss_pred --CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHH
Confidence 243 67777765 889999988321 244 88889999999999999999999999999999999994432
Q ss_pred C--C----ccCC-CCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhc----CC----------CccHH
Q 013210 230 L--S----PARL-GADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLL----GP----------TMNPK 287 (447)
Q Consensus 230 ~--~----~~~~-g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~----g~----------~~~~~ 287 (447)
. + ...+ ++|+++.|+||+++++. ++ |+++. ++..++.+..... +.... +. .....
T Consensus 302 ~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~-~~-G~l~~~~~~~~~~~~~~~~-yl~~~~~~~~~~~~~~~~~~r~~~al 378 (497)
T 2qma_A 302 ILSSHKSRLKGVERAHSISVDFHKLFYQTI-SC-GALLVNDKSNFKFLLHHAD-YLNREHDELPNLVDKSIATTKRFDAL 378 (497)
T ss_dssp GGSTTGGGGTTGGGCSEEEEETTTTTCCCS-SC-EEEEESCGGGGGGGCC---------------------CCSCCCTHH
T ss_pred HhCcchHhhcCcccCCEEEEcchhccCCCc-ce-EEEEEeCHHHHHHhcCCch-hcCCccccCCCccccCCCCCCchhHH
Confidence 2 2 1123 67999999999988774 46 66654 4543433311000 00000 00 00112
Q ss_pred HHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----
Q 013210 288 VAFELSERI--PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE----- 359 (447)
Q Consensus 288 ~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~----- 359 (447)
..+..++.+ +.+...+++..++++++.+.|++.+ +++..+. .+++++|.+...
T Consensus 379 ~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-------------------~~~~v~f~~~~~~~~~~ 439 (497)
T 2qma_A 379 KVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP-------------------SLSTVLFRATHETADLD 439 (497)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC-------------------SSSEEEEEECCSSSCHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC-------------------CceEEEEEEcCCccCHH
Confidence 223333322 3456677888899999999999874 3554332 234899998642
Q ss_pred HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHH
Q 013210 360 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 360 ~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~ 438 (447)
.....+.+.+... |++.++ + ... ...+.+|||+ + ..++++.++.+.++|++
T Consensus 440 ~l~~~l~~~l~~~---G~~~~~-~---------~~~--------------~g~~~lRis~~~-~~~t~edi~~~~~~l~~ 491 (497)
T 2qma_A 440 ELNKALRLEALTR---GIAVLG-E---------TIV--------------DGKTALKFTILN-PCLTTSDFESLLSKINM 491 (497)
T ss_dssp HHHHHHHHHHHHH---TSCBCE-E---------EEE--------------TTEEEEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCEEEE-e---------eEE--------------CCEEEEEEEecC-CCCCHHHHHHHHHHHHH
Confidence 1123455555432 221111 0 000 0135799998 7 77888888888888776
Q ss_pred hh
Q 013210 439 MQ 440 (447)
Q Consensus 439 ~~ 440 (447)
+.
T Consensus 492 ~~ 493 (497)
T 2qma_A 492 LA 493 (497)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-21 Score=203.55 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=151.8
Q ss_pred CchHHHHHHHHHHHhCCCeEE-EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC----
Q 013210 98 NPTVLNLSRQMAALEGTEAAY-CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---- 172 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~-~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~---- 172 (447)
...+.++++.+|+++|++..+ +++|+++||.+++++++++||+|+++.++|.++...+ + +..|.++++++.
T Consensus 172 ~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~---~-~l~Ga~~v~v~~~~~~ 247 (730)
T 1c4k_A 172 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSA---L-AMAGGRPVYLQTNRNP 247 (730)
T ss_dssp BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH---T-TTTCCEEEEECEEECT
T ss_pred hHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHH---H-HHCCCEEEEEeCCccc
Confidence 456789999999999998855 5555569999999999999999999999999988761 1 236888777653
Q ss_pred ------CCHHHH-----HHhhccCC------c----eEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCC
Q 013210 173 ------SDHEMV-----NSAIVQGR------T----KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVL 230 (447)
Q Consensus 173 ------~d~~~l-----~~~i~~~~------t----~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~ 230 (447)
.|+++| ++++ +++ + ++|++++| |++|.+.|+++|+++|+++|+++|+|++|+ .+.+
T Consensus 248 ~~i~g~id~e~L~~~~le~~i-~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f 325 (730)
T 1c4k_A 248 YGFIGGIYDSDFDEKKIRELA-AKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQF 325 (730)
T ss_dssp TCCEEEECGGGSCHHHHHHHT-TTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGS
T ss_pred cCccCCCCHHHHhhhHHHHHh-hcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEccccccccc
Confidence 166666 8888 443 5 89999998 589999999999999999999999999994 3222
Q ss_pred C-------ccC---CCCe----EEEeCCCccccCCCCeeEEEEEcChHHH---------HHHHHHhhhhhhhcCCCccH-
Q 013210 231 S-------PAR---LGAD----VVVHSISKFISGGADIIAGAVCGPANLV---------NSMMDLHQGALMLLGPTMNP- 286 (447)
Q Consensus 231 ~-------~~~---~g~d----i~~~S~sK~~g~~g~~igG~l~~~~~~~---------~~l~~~~~~~~~~~g~~~~~- 286 (447)
. +.. +++| +++.|+||++++++ .||+++.+++.+ ..+..... ....++++.
T Consensus 326 ~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~--~gg~I~v~~~~l~g~~~~i~~~~~~~~~~---~~~stsp~~~ 400 (730)
T 1c4k_A 326 IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFN---LFMSTSPFYP 400 (730)
T ss_dssp SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHH---HHSCSSCCHH
T ss_pred CcccCCcCcccccccCCCCCCEEEEECCCCCCCCCC--CEEEEEecchhhcCcccccCHHHHHHHHH---HhCCCCCcHH
Confidence 2 232 2777 99999999988654 347774432221 22222211 122222222
Q ss_pred -HHHHH-HHccCC--cHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCC
Q 013210 287 -KVAFE-LSERIP--HLGLRMKEHCHRALIFARRMKK-L-GLKVLYP 327 (447)
Q Consensus 287 -~~a~~-~~~~~~--~l~~~~~~~~~~~~~l~~~L~~-~-~~~v~~p 327 (447)
.++.. +...+. .-.+++++..++++++++.|++ . ++++..|
T Consensus 401 ~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p 447 (730)
T 1c4k_A 401 MYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVP 447 (730)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSC
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccc
Confidence 22221 222122 2345677888999999999988 3 5566544
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-21 Score=195.19 Aligned_cols=292 Identities=12% Similarity=0.091 Sum_probs=190.4
Q ss_pred CCchHHHHHHHH----HHHhCCC-----------eEEEeCChHHHHHHHHHHhcC-------------------CCCeEE
Q 013210 97 FNPTVLNLSRQM----AALEGTE-----------AAYCTASGMSAISSVLMQLCS-------------------SGGHVV 142 (447)
Q Consensus 97 ~~~~~~~l~~~i----a~l~g~~-----------~~~~tsggt~A~~~al~~l~~-------------------~gd~Vi 142 (447)
..|...++|+.+ ++++|.+ ..+||+|||+||..++.+... +++.|+
T Consensus 107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi 186 (475)
T 3k40_A 107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence 356666677654 6777765 489999999999999876531 235799
Q ss_pred EeCCCchhHHHHHHhhcCcccCeeEEEeCCC----CHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHHHH
Q 013210 143 AARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAH 213 (447)
Q Consensus 143 ~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~la~ 213 (447)
++..+|.++...+. ..|.+++.++.+ |+++|+++|+.. .+.+|+++.++|++|.+.|+++|+++|+
T Consensus 187 ~s~~~H~s~~~~~~-----~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~ 261 (475)
T 3k40_A 187 CSDQAHSSVERAGL-----LGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGN 261 (475)
T ss_dssp EETTSCHHHHHHHH-----HHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred ECCCchHHHHHHHH-----HcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHH
Confidence 99999999888773 258889988875 899999998321 1678888999999999999999999999
Q ss_pred hcCCEEEEeCCCCCC-CCCcc----CC---CCeEEEeCCCccccCCCCeeEEEEEcChHHHH-HHHH---H-hhh-----
Q 013210 214 DKGVTVVVDNTFSPL-VLSPA----RL---GADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMD---L-HQG----- 275 (447)
Q Consensus 214 ~~gi~livD~~~~~~-~~~~~----~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~---~-~~~----- 275 (447)
+||+++|+|++|+.. ...+. -. .+|.++.|+||+++.|.. +|++++.+++.+. .+.. + ...
T Consensus 262 ~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g-~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~ 340 (475)
T 3k40_A 262 KHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD-CSAMWLKDPSWVVNAFNVDPLYLKHDMQGSA 340 (475)
T ss_dssp HTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS-CEEEEESSGGGC-------------------
T ss_pred HhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc-eEEEEEeCHHHHHHHhcCCccccCCCcCCCC
Confidence 999999999999442 22211 11 369999999998886644 4344455554432 2211 0 000
Q ss_pred -----hhhhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCC
Q 013210 276 -----ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 276 -----~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
.....+........+.+++ +.+.+.+++++..++++++.+.|++.+ +++..|.
T Consensus 341 ~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~------------------- 401 (475)
T 3k40_A 341 PDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI------------------- 401 (475)
T ss_dssp --------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC-------------------
T ss_pred CCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------------
Confidence 0000111111222333222 234466778888999999999999984 4665432
Q ss_pred cCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013210 348 FGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 426 (447)
Q Consensus 348 ~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~ 426 (447)
..++++|.+++ ......+.++|... |.+.++ |... .....+|+|++...+++
T Consensus 402 ~~~iv~f~~~~~~~~~~~l~~~L~~~---g~~~~~----------~~~~--------------~g~~~lR~~~~~~~tt~ 454 (475)
T 3k40_A 402 NMGLVCFRLKGSNERNEALLKRINGR---GHIHLV----------PAKI--------------KDVYFLRMAICSRFTQS 454 (475)
T ss_dssp BTTEEEEEESSCHHHHHHHHHHHHHH---TSCBCE----------EEEE--------------TTEEEEEEECCCTTCCH
T ss_pred ceEEEEEEeCCchHHHHHHHHHHHhC---CcEEEE----------eeEE--------------CCEEEEEEEeCCCCCCH
Confidence 23489999863 44456777777752 222221 1111 01367999987234466
Q ss_pred HHHHHHHHHHHHhh
Q 013210 427 QRWSQFEKALSRMQ 440 (447)
Q Consensus 427 ~~i~~l~~al~~~~ 440 (447)
+.|+.+.++|+++.
T Consensus 455 ~di~~~~~~i~~~~ 468 (475)
T 3k40_A 455 EDMEYSWKEVSAAA 468 (475)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666553
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=200.16 Aligned_cols=252 Identities=17% Similarity=0.174 Sum_probs=167.2
Q ss_pred CCCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHH--hcCCCCeEEEeCCCchhHHHHHHhhc---------Cccc
Q 013210 96 HFNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQ--LCSSGGHVVAARTLYGGTHALLTHFF---------PRAC 163 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~--l~~~gd~Vi~~~~~y~~~~~~~~~~~---------~~~~ 163 (447)
+..+...++++.+++++ +.+.++||+||++|+..+++. .+..+++||+.++.|+++........ +...
T Consensus 89 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~ 168 (424)
T 2e7u_A 89 APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSA 168 (424)
T ss_dssp SCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESST
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCC
Confidence 35666789999999998 678899999999999999985 23345789999999988643221100 0112
Q ss_pred Ce------eEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013210 164 NI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS 231 (447)
Q Consensus 164 g~------~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~ 231 (447)
|+ .+..++..|+++|++++++ +++++|++++.++++|.+.+ +++|.++ ++||+++|+||+|+++...
T Consensus 169 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g 247 (424)
T 2e7u_A 169 GVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA 247 (424)
T ss_dssp TCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSS
T ss_pred CCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccc
Confidence 32 3556677799999998842 46778888777777999887 9999999 9999999999999766321
Q ss_pred c------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHH
Q 013210 232 P------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRM 303 (447)
Q Consensus 232 ~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~ 303 (447)
. .....|++ |+||.+++ |.++ |++++++++++.+..... ...+..++.+++.++..++..++......
T Consensus 248 ~~~~~~~~~~~~di~--s~sK~l~~-G~~~-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 323 (424)
T 2e7u_A 248 FGGATELLGLKPDLV--TLGKILGG-GLPA-AAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYY 323 (424)
T ss_dssp TTHHHHHHTCCCSEE--EECGGGGT-TSSC-EEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHH
T ss_pred hhHHHHHhCCCcchh--hhhhhhhC-Ccce-EEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 1 11235654 78999995 8888 999999988876654111 01112223233333333332221113355
Q ss_pred HHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------------HHHHHHHH
Q 013210 304 KEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKANRLM 366 (447)
Q Consensus 304 ~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------------~~~~~~l~ 366 (447)
++..++++++.+.|++. +.....+ +.|.++++.+.. ......+.
T Consensus 324 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (424)
T 2e7u_A 324 AYLEDLGARLEAGLKEVLKEKGLPHTVN-------------------RVGSMITVFFTEGPVVTFQDARRTDTELFKRFF 384 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEE-------------------EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEE-------------------eeceEEEEEEeCCCCcchhhhcccCHHHHHHHH
Confidence 66777888888888663 3311111 356799999864 23356677
Q ss_pred HHhhc
Q 013210 367 NYLQN 371 (447)
Q Consensus 367 ~~l~~ 371 (447)
+.|..
T Consensus 385 ~~l~~ 389 (424)
T 2e7u_A 385 HGLLD 389 (424)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77765
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-21 Score=194.60 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=193.5
Q ss_pred CCchHHHHHHHH----HHHhCCC------------eEEEeCChHHHHHHHHHHhcC-------------------CCCeE
Q 013210 97 FNPTVLNLSRQM----AALEGTE------------AAYCTASGMSAISSVLMQLCS-------------------SGGHV 141 (447)
Q Consensus 97 ~~~~~~~l~~~i----a~l~g~~------------~~~~tsggt~A~~~al~~l~~-------------------~gd~V 141 (447)
..|...++|+.+ ++++|.+ ..+||+|||+||..++.+... +++.|
T Consensus 112 ~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 191 (481)
T 4e1o_A 112 SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVA 191 (481)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEE
Confidence 356666777765 5566754 469999999999999876532 45689
Q ss_pred EEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHH
Q 013210 142 VAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRL 211 (447)
Q Consensus 142 i~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~l 211 (447)
+++...|.++...+. ..|.+++.++.+ |+++|+++|+.. .+.+|+++.++|++|.+.|+++|+++
T Consensus 192 ~~s~~~H~s~~~~~~-----~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~l 266 (481)
T 4e1o_A 192 YASDQAHSSVEKAGL-----ISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPI 266 (481)
T ss_dssp EEETTSCHHHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred EEcCcchHHHHHHHH-----hCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHH
Confidence 999999999888763 257888888875 899999998322 16788889999999999999999999
Q ss_pred HHhcCCEEEEeCCCCCC-CCCc----cCCC---CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhh-----
Q 013210 212 AHDKGVTVVVDNTFSPL-VLSP----ARLG---ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM----- 278 (447)
Q Consensus 212 a~~~gi~livD~~~~~~-~~~~----~~~g---~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~----- 278 (447)
|++||+++|+|++|+.. ...+ ...| +|.++.++||+++.|.. .|++++.+++.+.........+..
T Consensus 267 a~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g-~g~l~~~~~~~l~~~~~~~~~yl~~~~~~ 345 (481)
T 4e1o_A 267 CAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFD-CTGFWVKDKYKLQQTFSVNPIYLRHANSG 345 (481)
T ss_dssp HHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS-CEEEEESBHHHHHTTTCCCCGGGCCTTTT
T ss_pred HHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCc-eEEEEEeCHHHHHHHhcCCchhccCcccC
Confidence 99999999999999443 2221 1113 59999999999997755 334555555554322111110100
Q ss_pred ----------hcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccC
Q 013210 279 ----------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKE 345 (447)
Q Consensus 279 ----------~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~ 345 (447)
..+........+..++ +.+.+.+++++..++++++.+.|++.+ +++..|.
T Consensus 346 ~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~----------------- 408 (481)
T 4e1o_A 346 VATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR----------------- 408 (481)
T ss_dssp TSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC-----------------
T ss_pred CCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----------------
Confidence 0111122333333332 334567788889999999999999874 4554332
Q ss_pred CCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013210 346 YGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 424 (447)
Q Consensus 346 ~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~ 424 (447)
..++++|.+++ ......+.++|... |.+.++ |... .....+|+|++...+
T Consensus 409 --~~~~v~f~~~~~~~~~~~l~~~L~~~---g~~~~~----------~~~~--------------~g~~~lR~~~~~~~t 459 (481)
T 4e1o_A 409 --HLGLVVFRLKGPNSLTENVLKEIAKA---GRLFLI----------PATI--------------QDKLIIRFTVTSQFT 459 (481)
T ss_dssp --CSSEEEEEESSCHHHHHHHHHHHHHH---CSSBCE----------EEEE--------------TTEEEEEEECCCTTC
T ss_pred --ceeEEEEEeCCchHHHHHHHHHHHhC---CeEEEE----------eeEE--------------CCEEEEEEEeCCCCC
Confidence 23489999863 44456777777652 222222 1110 013579999872344
Q ss_pred HHHHHHHHHHHHHHhh
Q 013210 425 LDQRWSQFEKALSRMQ 440 (447)
Q Consensus 425 ~~~~i~~l~~al~~~~ 440 (447)
+++.|+.+.++|+++.
T Consensus 460 t~~di~~~~~~i~~~~ 475 (481)
T 4e1o_A 460 TRDDILRDWNLIRDAA 475 (481)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6777777777766553
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=193.66 Aligned_cols=282 Identities=13% Similarity=0.121 Sum_probs=186.0
Q ss_pred chHHHHHHHHHHHhCCCe--EEEeCChHHHHHHHHHH-hcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 99 PTVLNLSRQMAALEGTEA--AYCTASGMSAISSVLMQ-LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~--~~~tsggt~A~~~al~~-l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
....++++.+++++|.+. +++++|++.++.+++.+ .+++||+|+++.++|+++...+...... .|+++++++..
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~-~G~~v~~v~~~~~ 186 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEA-VGAKLLTLPLEGG 186 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHH-TTCEEEEECCBTT
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHH-CCCEEEEEcCcCC
Confidence 457899999999999875 47999999444444333 2578999999999999998777543333 68899988753
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCC-C-CCCCCCccCCCCeEEEeCCCc---
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT-F-SPLVLSPARLGADVVVHSISK--- 246 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~-~-~~~~~~~~~~g~di~~~S~sK--- 246 (447)
|+++ + +++|++|++++| ||+|.+.|+++|+++|+++|+++|+|.. + .+....+..+++|++++|.+|
T Consensus 187 ~~d~~~----i-~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~ 260 (438)
T 1wyu_A 187 RTPLPE----V-GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGL 260 (438)
T ss_dssp BCCCCC----C-CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTC
T ss_pred ccCHHH----h-CCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCC
Confidence 3333 6 678999999999 9999999999999999999999997743 3 122123345689999999555
Q ss_pred --cccCCCCeeEEEEEcChHHHHHHHHHh--------------------hhh-hhhcC-CCc---cHHHHHHH---HccC
Q 013210 247 --FISGGADIIAGAVCGPANLVNSMMDLH--------------------QGA-LMLLG-PTM---NPKVAFEL---SERI 296 (447)
Q Consensus 247 --~~g~~g~~igG~l~~~~~~~~~l~~~~--------------------~~~-~~~~g-~~~---~~~~a~~~---~~~~ 296 (447)
+++++ ++ |+++.++++++.+.... ... ....+ ... ....+..+ +..+
T Consensus 261 ~~~~~Gp--~~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~ 337 (438)
T 1wyu_A 261 PMGFGGP--HF-GFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL 337 (438)
T ss_dssp CCGGGCS--CC-EEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH
T ss_pred CccCCCC--Ce-eEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHh
Confidence 34444 35 89999888765542110 000 00011 111 22222111 2111
Q ss_pred --CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013210 297 --PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA 373 (447)
Q Consensus 297 --~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~ 373 (447)
+.+.+..++..++++++.+.|++. ++++..|. + .-.++.|.++. ....+.+.|...
T Consensus 338 ~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~--------------~~~~~~~~~~~--~~~~~~~~L~~~- 396 (438)
T 1wyu_A 338 GPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK----P--------------FFNEFALALPK--DPEAVRRALAER- 396 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS----S--------------BCSEEEEECSS--CHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC----C--------------eEEEEEEeCCC--CHHHHHHHHHHC-
Confidence 235556677889999999999987 56665432 1 11245566541 245677777652
Q ss_pred ccccccc--cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 374 QFGFMAV--SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 374 ~~g~~~v--s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
| +.+ ..|.. .+++.||||++ ..++++.++.+.++|+++
T Consensus 397 --g-i~v~~~~~~~------------------------~~~~~lRis~~-~~~t~edi~~~~~~l~~~ 436 (438)
T 1wyu_A 397 --G-FHGATPVPRE------------------------YGENLALFAAT-ELHEEEDLLALREALKEV 436 (438)
T ss_dssp --T-CCCCEECCTT------------------------SCSSEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred --C-ceeccccccc------------------------cCCCeEEEEec-ccCCHHHHHHHHHHHHHH
Confidence 3 343 22311 11578999999 888999999998888765
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-24 Score=213.38 Aligned_cols=243 Identities=15% Similarity=0.112 Sum_probs=168.1
Q ss_pred CCCchHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCcccCe--eEEEe
Q 013210 96 HFNPTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFV 170 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~~~~v 170 (447)
+.++...+++++|++++ +.+.++|++||++|+..+++.+. ..+++||+.+..|++...... ..+...|+ .+..+
T Consensus 137 ~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~-sg~~~~g~~~~~~~~ 215 (465)
T 2yky_A 137 TQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA-SGHAPTNAPYHVVLG 215 (465)
Confidence 35666788999999998 67889999999999999998642 345899999999988654331 00111344 44455
Q ss_pred CCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc----cCCCCeEE
Q 013210 171 DISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP----ARLGADVV 240 (447)
Q Consensus 171 ~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~----~~~g~di~ 240 (447)
+.+|+++|++++++ +++++|++++++|++|.+.+ +++|.++|++||+++|+||+|+ +.... ..+++...
T Consensus 216 ~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pD 294 (465)
T 2yky_A 216 VYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISAD 294 (465)
Confidence 66789999999832 68999999998888998876 9999999999999999999998 53211 11243334
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHH--h--hhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDL--H--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~--~--~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~ 316 (447)
+.|++|++|+ |.++ |++++++++++.+... . ....+..++++++.++.+.+..++. ....++..++.+++.+.
T Consensus 295 i~t~sK~lg~-G~pi-G~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~-~~~~~~~~~~~~~l~~~ 371 (465)
T 2yky_A 295 LTTLGKYIGG-GMSF-GAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT-RQAASDLSASGDRFRAN 371 (465)
Confidence 5579999997 8898 8999999998887651 1 1122344555555555444444332 23456677777888888
Q ss_pred HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 317 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 317 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
|++...+...+. ...+.|.+++|.+.+
T Consensus 372 L~~~~~~~~~~~---------------~v~g~G~~~~i~~~~ 398 (465)
T 2yky_A 372 LNRIAVENQAPL---------------QFTGLGSLGTIHFSR 398 (465)
Confidence 766421111111 112578899998864
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=198.13 Aligned_cols=211 Identities=13% Similarity=0.054 Sum_probs=149.2
Q ss_pred CchHHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
...+.++++.+++++|.+.. ++++|+++|+.+++.+++++||+|+++.++|.++...+. ..|.++++++.+
T Consensus 204 ~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~-----~~G~~~v~v~~~~~~ 278 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLM-----LTGAKPVYMVPSRNR 278 (755)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HHCCEEEEECCCBCT
T ss_pred ccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHH-----HcCCEEEEEeCCCCc
Confidence 45678999999999999875 556666799999999999999999999999999887763 258888877642
Q ss_pred ------------CHHHHHHhhcc-CCce--------EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCC
Q 013210 174 ------------DHEMVNSAIVQ-GRTK--------VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS 231 (447)
Q Consensus 174 ------------d~~~l~~~i~~-~~t~--------lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~ 231 (447)
|+++|++++++ ++++ +|++++| |++|.+.|+++|+++|++||+++|+|++|+ .+.+.
T Consensus 279 ~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~ 357 (755)
T 2vyc_A 279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFN 357 (755)
T ss_dssp TSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGC
T ss_pred cccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccC
Confidence 79999999843 2454 8999998 799999999999999999999999999994 32222
Q ss_pred -------ccCCC--CeE------EEeCCCccccCCCCeeEEEEEcChH---H-HHHHHHHhhhhhhhcCCCcc--HHHHH
Q 013210 232 -------PARLG--ADV------VVHSISKFISGGADIIAGAVCGPAN---L-VNSMMDLHQGALMLLGPTMN--PKVAF 290 (447)
Q Consensus 232 -------~~~~g--~di------~~~S~sK~~g~~g~~igG~l~~~~~---~-~~~l~~~~~~~~~~~g~~~~--~~~a~ 290 (447)
+. .+ +|+ ++.|+||+++++. .||+++.+++ + ...+..... ....++++ ..++.
T Consensus 358 ~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~--~g~~i~~~~~~~~i~~~~~~~~~~---~~~s~sp~~~~iaal 431 (755)
T 2vyc_A 358 PIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYM---MHATTSPLYAICASN 431 (755)
T ss_dssp GGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCT--TCEEEEEECCBTCCCHHHHHHHHH---HTSCSSCCHHHHHHH
T ss_pred cccCCcchh-cCCcCCccCCCeEEEECccccccCcC--CeeeeeecCcccccCHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence 22 45 676 9999999988664 2477765433 1 123322211 01112222 22222
Q ss_pred H-HHccCCc--HHHHHHHHHHHHHHHHHHHHhC
Q 013210 291 E-LSERIPH--LGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 291 ~-~~~~~~~--l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
. ++..+.. ...+.++..++.+++++.|+++
T Consensus 432 ~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l 464 (755)
T 2vyc_A 432 DVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARL 464 (755)
T ss_dssp HHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 2222222 3456777888888888888764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-20 Score=185.28 Aligned_cols=243 Identities=13% Similarity=0.063 Sum_probs=154.0
Q ss_pred cccccCCHHHHH-HhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHh-CC----C--eEEEeCChHHHHHHHHHHh---
Q 013210 66 ATFTVMEPETMR-RMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE-GT----E--AAYCTASGMSAISSVLMQL--- 134 (447)
Q Consensus 66 tt~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~-g~----~--~~~~tsggt~A~~~al~~l--- 134 (447)
.++++|.+.+.. ...... ..|.|.-. .-..++++.+++++ |. + ..+-|.|||.|+..++..+
T Consensus 60 ~~~vl~~Vk~A~~~~~~~~-----~~~~Y~p~--~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~ 132 (420)
T 4h51_A 60 RPYPLRVVRKAEQLLLDMN-----LDYEYLPI--SGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRV 132 (420)
T ss_dssp CBCCCHHHHHHHHHHHHTT-----CCCCCCCT--TCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHhcCC-----CCCCCCCc--CChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHh
Confidence 345566663333 333221 23445432 22357888888874 32 1 2456899999988777654
Q ss_pred -cCCCCeEEEeCCCchhHHHHHHhhcCcccCee-EEEe---CCC----CHHHHHHhhc--cCCceEEEEEcCCCCCcccc
Q 013210 135 -CSSGGHVVAARTLYGGTHALLTHFFPRACNIT-TTFV---DIS----DHEMVNSAIV--QGRTKVLYFESISNPTLAVA 203 (447)
Q Consensus 135 -~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~-~~~v---~~~----d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~ 203 (447)
..+||.|++++|.|+.+...+.. .|.+ +... +.+ |.+.+.+.++ .++++++++.+|+||||.+.
T Consensus 133 ~~~pgd~V~ip~P~w~~y~~i~~~-----aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~ 207 (420)
T 4h51_A 133 FDAETTPIYLSDPTWPNHYGVVKA-----AGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDP 207 (420)
T ss_dssp SCTTTSCEEEEESCCTHHHHHHHH-----TTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCC
T ss_pred cCCCCCEEEEecCCchhHHHHHHH-----cCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCC
Confidence 46899999999999999888742 4543 3222 221 6777766652 46778888899999999998
Q ss_pred C---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHH
Q 013210 204 N---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 268 (447)
Q Consensus 204 ~---l~~I~~la~~~gi~livD~~~~~~~~~~~------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~ 268 (447)
+ +++|+++|+++++++++|++|.++.+... .....+++.|+||.|+.+|+|+ ||++++.+..+.
T Consensus 208 ~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Rv-G~~~~~~~~~~~ 286 (420)
T 4h51_A 208 SQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERA-GTLSLLLKDKTK 286 (420)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEECSCHHH
T ss_pred CHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCce-EEEEecccCHHH
Confidence 5 67889999999999999999977755311 1135688999999999999999 888664433322
Q ss_pred HH-------HHhhhhhhhcCCCccHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 269 MM-------DLHQGALMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 269 l~-------~~~~~~~~~~g~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
.. .... ......+...+..+...+.. .+++....+++.++++.|.+.|++.+.
T Consensus 287 ~~~~~~~l~~~~r-~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~ 353 (420)
T 4h51_A 287 RADVKSVMDSLIR-EEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQT 353 (420)
T ss_dssp HHHHHHHHHHHHH-TTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhh-cccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22 1211 11111122222222222221 112334456678889999999988753
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=189.26 Aligned_cols=281 Identities=16% Similarity=0.154 Sum_probs=172.1
Q ss_pred hHHHHHHHHHHHh--CCCeEEEeCChHHHHHHHHHHhc-------C------------------CC---CeEEEeCCCch
Q 013210 100 TVLNLSRQMAALE--GTEAAYCTASGMSAISSVLMQLC-------S------------------SG---GHVVAARTLYG 149 (447)
Q Consensus 100 ~~~~l~~~ia~l~--g~~~~~~tsggt~A~~~al~~l~-------~------------------~g---d~Vi~~~~~y~ 149 (447)
..+.+++.++++. +.+.++||+||++|+..+++.+. + +| ++||+.++.||
T Consensus 111 l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yH 190 (472)
T 1ohv_A 111 FVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFH 190 (472)
T ss_dssp HHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCC
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcc
Confidence 3344444455555 56789999999999999998763 1 35 79999999998
Q ss_pred hHHHHHHhhcCc----ccCe-----eEEEeCC-----------------CCHHHHHHhhccC------CceEEEEEcCCC
Q 013210 150 GTHALLTHFFPR----ACNI-----TTTFVDI-----------------SDHEMVNSAIVQG------RTKVLYFESISN 197 (447)
Q Consensus 150 ~~~~~~~~~~~~----~~g~-----~~~~v~~-----------------~d~~~l~~~i~~~------~t~lV~i~~~~N 197 (447)
+........... ..+. ....++. .|+++|++++ ++ ++++|++++++|
T Consensus 191 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~~vive~v~~ 269 (472)
T 1ohv_A 191 GRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLI-VKYRKKKKTVAGIIVEPIQS 269 (472)
T ss_dssp CSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHH-HHHHHTTCCEEEEEECSSBC
T ss_pred cccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHH-HhcCCCCCCEEEEEEcCCcC
Confidence 865443211110 0011 1111110 1578888888 43 799999999999
Q ss_pred CCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccCCC----CeEEEeCCCccc-cCCCCeeEEEEEcCh
Q 013210 198 PTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARLG----ADVVVHSISKFI-SGGADIIAGAVCGPA 263 (447)
Q Consensus 198 ptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-----~~~~g----~di~~~S~sK~~-g~~g~~igG~l~~~~ 263 (447)
++|.+.| +++|.++|++||+++|+||+|+++... ...++ +|++ |++|.+ + ||+++ ++
T Consensus 270 ~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~~~-~~ 340 (472)
T 1ohv_A 270 EGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGFFH-KE 340 (472)
T ss_dssp TTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEEEE-CG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCccC-ch
Confidence 9999887 999999999999999999999654322 12234 5665 578994 4 37766 65
Q ss_pred HHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CCCCchhHHHHHHh
Q 013210 264 NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHHELLKSMA 342 (447)
Q Consensus 264 ~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~-~~~~p~~~l~~~~~ 342 (447)
++. .+..... ..+..++.+.+.++..++..+.. ....+++.+++++|.+.|+++... +|. +..
T Consensus 341 ~~~-~~~~~~~-~~T~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~--~~~~v~~----------- 404 (472)
T 1ohv_A 341 EFR-PNAPYRI-FNTWLGDPSKNLLLAEVINIIKR-EDLLSNAAHAGKVLLTGLLDLQAR--YPQFISR----------- 404 (472)
T ss_dssp GGS-CSSSSSS-CCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH--CTTTCEE-----------
T ss_pred hhc-ccccccc-cCccCccHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhh--CCCcEEe-----------
Confidence 542 1111111 11122333333333333322211 124566777888888888764110 111 000
Q ss_pred ccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013210 343 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 422 (447)
Q Consensus 343 ~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~ 422 (447)
..+.|.+++|.+++......+...|... |+ .+..+ ..+.||||++ .
T Consensus 405 --~~~~g~~~~~~~~~~~~~~~~~~~l~~~---Gv-~~~~~---------------------------g~~~iRi~~~-~ 450 (472)
T 1ohv_A 405 --VRGRGTFCSFDTPDESIRNKLISIARNK---GV-MLGGC---------------------------GDKSIRFRPT-L 450 (472)
T ss_dssp --EEEETTEEEEECSSHHHHHHHHHHHHHT---TE-ECEEE---------------------------TTTEEEECCC-T
T ss_pred --ecCCceEEEEEeCChhHHHHHHHHHHHC---Ce-EEecC---------------------------CCCEEEEECC-C
Confidence 0135779999887654566777777642 32 22111 1368999999 8
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 013210 423 GTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 423 ~~~~~~i~~l~~al~~~~ 440 (447)
..+++.|+.+.++|+++.
T Consensus 451 ~~t~e~i~~~~~~l~~~l 468 (472)
T 1ohv_A 451 VFRDHHAHLFLNIFSDIL 468 (472)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 888888888888887654
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-19 Score=176.20 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=150.6
Q ss_pred chHHHHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHh-hcCcccCeeEEEeCCCC
Q 013210 99 PTVLNLSRQMAALE-GTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTH-FFPRACNITTTFVDISD 174 (447)
Q Consensus 99 ~~~~~l~~~ia~l~-g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~-~~~~~~g~~~~~v~~~d 174 (447)
+...++.+.|++.+ +.+.++|++||+||+..|++... ...++|+.....||+....... ..+.........++.+|
T Consensus 127 ~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd 206 (454)
T 4ao9_A 127 LLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYND 206 (454)
T ss_dssp SSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCch
Confidence 44567888888877 56789999999999999998653 2346899999999885422200 00111223556678889
Q ss_pred HHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC-----CccCCCCeEEEeC
Q 013210 175 HEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-----SPARLGADVVVHS 243 (447)
Q Consensus 175 ~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~-----~~~~~g~di~~~S 243 (447)
++.+++.+++ +++.+|++|.+.+..|.+.| +++|.++|++||+++|+||++++-.. .-.....|+++
T Consensus 207 ~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t-- 284 (454)
T 4ao9_A 207 AQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSDLTT-- 284 (454)
T ss_dssp HHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSEEE--
T ss_pred HHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCcEEE--
Confidence 9999998843 46899999999999999987 99999999999999999999953111 11122357765
Q ss_pred CCccccCCCCeeEEEEEcChHHHHHHHHHh---hhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 244 ISKFISGGADIIAGAVCGPANLVNSMMDLH---QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 244 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~---~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
++|.+|+ |..+ |++++++++++.+.... ....++.|++++..++.+.+..+++ ....++..++.++|.+.|+++
T Consensus 285 ~gK~lgg-G~Pi-ga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~L~~l 361 (454)
T 4ao9_A 285 LGKYIGG-GMSF-GAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PEAAGALAERGEALRARLNAL 361 (454)
T ss_dssp EEGGGGT-TSSC-EEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccCC-CCcc-eeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHH
Confidence 8899985 5677 88899999987764321 1122344555555555555555544 335566677777777777653
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=175.84 Aligned_cols=211 Identities=12% Similarity=0.124 Sum_probs=149.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCCh-HHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASG-MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsgg-t~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
....+.++++.+|+++|++..+|+.+| +.||.+++++++++||+|+++.+.|.++...+. ..|.++++++..
T Consensus 193 ~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~-----lsGa~pv~v~~~~~ 267 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMM-----MSDVTPIYFRPTRN 267 (715)
T ss_dssp TBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HSCCEEEEECCCBC
T ss_pred CcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEecccc
Confidence 445678999999999999998776666 699999999999999999999999999988762 368888887742
Q ss_pred -------------CHHHHHHhhcc-CCce---EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCC----
Q 013210 174 -------------DHEMVNSAIVQ-GRTK---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS---- 231 (447)
Q Consensus 174 -------------d~~~l~~~i~~-~~t~---lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~---- 231 (447)
|+++|++++++ ++++ +|++++| |++|.+.|+++|.++|++++ +++|++|+ .+.+.
T Consensus 268 ~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~ 344 (715)
T 3n75_A 268 AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE 344 (715)
T ss_dssp TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGT
T ss_pred ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccc
Confidence 79999999843 3445 8999999 99999999999999998764 79999994 33222
Q ss_pred ---ccCCC--CeEE---EeCCCccccCCCCeeEEEEEcChHH-HHHHHHHhhhhhhhcCCCccH--HHHHH-HHccCC--
Q 013210 232 ---PARLG--ADVV---VHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALMLLGPTMNP--KVAFE-LSERIP-- 297 (447)
Q Consensus 232 ---~~~~g--~di~---~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~~~g~~~~~--~~a~~-~~~~~~-- 297 (447)
....+ +|++ +.|+||.+++... ||++..+.++ ...+..... . ...++++. .++.. +.+.++
T Consensus 345 ~~~al~~g~~aD~vii~~~S~hKtL~gltq--gs~i~v~~~i~~~~~~~~~~-~--~~STSpsy~~~AsldaA~~~~~~~ 419 (715)
T 3n75_A 345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQ--ASMIHVKGDVNEETFNEAYM-M--HTTTSPHYGIVASTETAAAMMKGN 419 (715)
T ss_dssp TSSTTSSSCCTTCEEEEEECHHHHSSCCTT--CEEEEEESCCCHHHHHHHHH-H--TSCSSCCHHHHHHHHHHHHHHSHH
T ss_pred cccccccCcCCCEEEEEEecccccccCCCC--eeEEEeCchhhHHHHHHHHH-h--hcCCCchHHHHHHHHHHHHHHHhh
Confidence 22223 5655 9999999986532 4777665432 223333222 1 22222332 22222 222223
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhC
Q 013210 298 HLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
.-.++.++..++.+++++.|+++
T Consensus 420 ~g~~~~~~l~~~a~~~r~~L~~i 442 (715)
T 3n75_A 420 AGKRLINGSIERAIKFRKEIKRL 442 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Confidence 22446677888888899888765
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=161.24 Aligned_cols=254 Identities=16% Similarity=0.167 Sum_probs=155.5
Q ss_pred CchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcC------cc---c
Q 013210 98 NPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP------RA---C 163 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~------~~---~ 163 (447)
++...++.++|+++.. .+.++|++||+||+..|++... ...++|+.....||+.......... .. .
T Consensus 106 ~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~ 185 (456)
T 4atq_A 106 YEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPF 185 (456)
T ss_dssp CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSC
T ss_pred cHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCc
Confidence 4445678888888874 4569999999999999997542 2346899999999886433211100 00 1
Q ss_pred CeeEEEeCCC-----------CHHHH-------HHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEE
Q 013210 164 NITTTFVDIS-----------DHEMV-------NSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVV 221 (447)
Q Consensus 164 g~~~~~v~~~-----------d~~~l-------~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~liv 221 (447)
...+..++.. +.+.+ ++.+..+++.+|++|.++...|.+.| +++|.++|++||+++|+
T Consensus 186 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~ 265 (456)
T 4atq_A 186 APEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIA 265 (456)
T ss_dssp CSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred cccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEe
Confidence 1234444432 22332 33332347899999999999998865 89999999999999999
Q ss_pred eCCCCCCCC-----Ccc--CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc
Q 013210 222 DNTFSPLVL-----SPA--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE 294 (447)
Q Consensus 222 D~~~~~~~~-----~~~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~ 294 (447)
||+++++.. ... ....|+++ ++|.+| .|..+ |++++++++++.+..... ..++.|++++..++.+.+.
T Consensus 266 DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg-gg~P~-~av~~~~~i~~~~~~~~~-~~Tf~gnpla~aaala~L~ 340 (456)
T 4atq_A 266 DEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIA-GGLPL-SAITGRADLLDAVHPGGL-GGTYGGNPVACAAALAAID 340 (456)
T ss_dssp ECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGG-TTSSC-EEEEEEHHHHTTSCTTSS-CCSSSSCHHHHHHHHHHHH
T ss_pred cccccccCCccccccccccCCCCchhh--hhhccc-CcCCc-eeeEecHHHHhcccccCC-CCCCCCChHHHHhhHHHHH
Confidence 999966531 112 22467776 779998 46778 888888888877654433 2335555555555544443
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-------CHHHHH
Q 013210 295 RIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-------TEEKAN 363 (447)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-------~~~~~~ 363 (447)
.++. ....++..+..+++.+.|+++ +.. ..|-+ .+..|.|.++.|++. ..+.+.
T Consensus 341 ~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~-~~~~v-------------~~VRG~Gl~~giel~~~~~~~~~~~~~~ 405 (456)
T 4atq_A 341 TMEQ-HDLNGRARHIEELALGKLRELAAELSAG-GGSVV-------------GDIRGRGAMLAIELVQPGSKEPNAELTK 405 (456)
T ss_dssp HHHH-TTHHHHHHHHHHHHHHHHHHHHHHCC------CE-------------EEEEEETTEEEEEEBCTTSCCBCHHHHH
T ss_pred HHhh-ccHHHHHHHHHHHHHHHHHHHHHhcccc-cCCce-------------EEeeecceEEEEEEecCCCCCcCHHHHH
Confidence 3321 112334444455555555442 210 00100 022368899999984 234456
Q ss_pred HHHHHhhc
Q 013210 364 RLMNYLQN 371 (447)
Q Consensus 364 ~l~~~l~~ 371 (447)
.+...+..
T Consensus 406 ~v~~~~~~ 413 (456)
T 4atq_A 406 AVAAACLK 413 (456)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67777665
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-16 Score=157.05 Aligned_cols=289 Identities=15% Similarity=0.214 Sum_probs=177.7
Q ss_pred CchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc-------CC-CCeEEEeCCCchhHHHHHHh---------h
Q 013210 98 NPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC-------SS-GGHVVAARTLYGGTHALLTH---------F 158 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~-------~~-gd~Vi~~~~~y~~~~~~~~~---------~ 158 (447)
++...+|.++|+++.+ .+.++|++||+||+..|++... ++ ..+||.....||+....... +
T Consensus 110 ~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~ 189 (473)
T 4e3q_A 110 SDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVF 189 (473)
T ss_dssp EHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGG
T ss_pred CHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccccccc
Confidence 4445678888888875 4679999999999999998542 12 25789999998874332211 1
Q ss_pred cCcccCeeEEEeCCC------------------CHHHHHHhhc---cCCceEEEEEcCCCCCccccC----HHHHHHHHH
Q 013210 159 FPRACNITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSRLAH 213 (447)
Q Consensus 159 ~~~~~g~~~~~v~~~------------------d~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~----l~~I~~la~ 213 (447)
.+...+ ...++.. ..+++++.+. .+++.+|++|.++...|.+.| +++|.++|+
T Consensus 190 ~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~ 267 (473)
T 4e3q_A 190 GLPLPG--FVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILR 267 (473)
T ss_dssp TCSCTT--EEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH
T ss_pred CCCCCc--ccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhc
Confidence 111112 2222221 1234455442 246789999999999998865 899999999
Q ss_pred hcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh------hhhhhc
Q 013210 214 DKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ------GALMLL 280 (447)
Q Consensus 214 ~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~------~~~~~~ 280 (447)
+||+++|+||+++++... ......|+++ ++|.+++.+.++ |+++.++++.+.+..... +..+..
T Consensus 268 ~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~gG~~Pl-~av~~~~~i~~~~~~~~~~~~~~~hg~T~~ 344 (473)
T 4e3q_A 268 KYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTAGFFPM-GAVILGPELSKRLETAIEAIEEFPHGFTAS 344 (473)
T ss_dssp HTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHHHHHHHHHHHSCCCCCCTTT
T ss_pred ccceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccCCCCCc-ccccccHHHHHHhccccccccccccCCCCC
Confidence 999999999999776321 1122467776 889999766788 888899999888764311 122344
Q ss_pred CCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-
Q 013210 281 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE- 359 (447)
Q Consensus 281 g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~- 359 (447)
|++++..++.+.+..++. ....++..+..++|.+.|+++.. .|.+. +..|.|.++.+++...
T Consensus 345 Gnpla~Aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~---~~~v~-------------~vRG~Gl~~gielv~~~ 407 (473)
T 4e3q_A 345 GHPVGCAIALKAIDVVMN-EGLAENVRRLAPRFEERLKHIAE---RPNIG-------------EYRGIGFMWALEAVKDK 407 (473)
T ss_dssp TCHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHTT---STTEE-------------EEEEETTEEEEEECSBT
T ss_pred CCcchhhhhhhhhhhhcc-ccHHHHHHHHHHHHHHHHHHHhc---CCCee-------------EEeecceEEEEEEecCc
Confidence 444444444444332211 11334555666777777765421 01110 1226888999998411
Q ss_pred ----------HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---CCCHH
Q 013210 360 ----------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---LGTLD 426 (447)
Q Consensus 360 ----------~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~---~~~~~ 426 (447)
.....+...+.. .|++....| +.|||+..+ .++++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~---~Gll~~~~g-----------------------------~~i~l~PPL~it~~eid 455 (473)
T 4e3q_A 408 ASKTPFDGNLSVSERIANTCTD---LGLICRPLG-----------------------------QSVVLCPPFILTEAQMD 455 (473)
T ss_dssp TTTBCCCGGGCHHHHHHHHHHH---TTEECEEET-----------------------------TEEEECCCTTCCHHHHH
T ss_pred cccccccccHHHHHHHHHHHHH---CCcEEEecC-----------------------------CEEEEeCCCCCCHHHHH
Confidence 124556666654 344332333 335554331 46677
Q ss_pred HHHHHHHHHHHHhh
Q 013210 427 QRWSQFEKALSRMQ 440 (447)
Q Consensus 427 ~~i~~l~~al~~~~ 440 (447)
+.++.|.++|+++.
T Consensus 456 ~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 456 EMFDKLEKALDKVF 469 (473)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888887764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.4e-15 Score=144.05 Aligned_cols=193 Identities=11% Similarity=0.105 Sum_probs=134.9
Q ss_pred eEEEeCChHHHHHHHHHHhcCC----CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--------CHHHHHHhhc
Q 013210 116 AAYCTASGMSAISSVLMQLCSS----GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIV 183 (447)
Q Consensus 116 ~~~~tsggt~A~~~al~~l~~~----gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--------d~~~l~~~i~ 183 (447)
..++++|+|.++.+++.+.+++ +++||++...|.++...+. ..|++++++++. |+++++++|+
T Consensus 136 ~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAli-----L~Gl~Pv~V~p~~d~~~~~id~e~le~aI~ 210 (501)
T 3hl2_A 136 NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI-----TAGFEPVVIENVLEGDELRTDLKAVEAKVQ 210 (501)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-----HTTCEEEEECEEEETTEEEECHHHHHHHHH
T ss_pred cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHH-----HcCCeEEEEeeeecccccCCCHHHHHHHHH
Confidence 4788999998888887777664 4999999999999988873 368888887652 8999999995
Q ss_pred cC--Cce-EEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCC------CccCCC-CeEEEeCCCccccCCC
Q 013210 184 QG--RTK-VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL------SPARLG-ADVVVHSISKFISGGA 252 (447)
Q Consensus 184 ~~--~t~-lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~------~~~~~g-~di~~~S~sK~~g~~g 252 (447)
+. +.. +|+.++++|..+.+.|+++|+++|++||+++|+|++| ..+.+ ...++| +|+++.|.||.+-.+
T Consensus 211 e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvp- 289 (501)
T 3hl2_A 211 ELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP- 289 (501)
T ss_dssp HHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCC-
T ss_pred hcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceee-
Confidence 32 233 3444444554557789999999999999999999999 44422 122347 999999999999766
Q ss_pred CeeEEEEE--cChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013210 253 DIIAGAVC--GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL 320 (447)
Q Consensus 253 ~~igG~l~--~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~ 320 (447)
+||.++ .++++++.+...-.+ +. +.......++.+. +.+.+.+.+++..++.++|.+.|+++
T Consensus 290 --IGG~ii~~~d~e~l~~~~~~yPG--r~--S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l 355 (501)
T 3hl2_A 290 --VGGAIIAGFNDSFIQEISKMYPG--RA--SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL 355 (501)
T ss_dssp --SSCEEEEESCHHHHHHHHHTSCS--CB--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCceEEEeCCHHHHHHHHHhCCC--CC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345443 466777766432211 01 1122223444333 33446677788888899999998774
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-15 Score=144.01 Aligned_cols=286 Identities=14% Similarity=0.144 Sum_probs=175.8
Q ss_pred ccccccccccCCH-HHHHHhhcCCCCC--CCCCccccCCCCchHHH-HHHHHHHHhCCCeE-----EEeCChHHHHHHHH
Q 013210 61 SIEASATFTVMEP-ETMRRMFAGELGP--DRDFFIYSRHFNPTVLN-LSRQMAALEGTEAA-----YCTASGMSAISSVL 131 (447)
Q Consensus 61 pi~~att~~~~~~-~~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~-l~~~ia~l~g~~~~-----~~tsggt~A~~~al 131 (447)
.+.+|-.|+.+.+ +.+-..+.++|.- |...|+-|-..-..++. +.++..+++|++.. +=--||+.||.+++
T Consensus 58 eLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy 137 (490)
T 3ou5_A 58 ELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVY 137 (490)
T ss_dssp ECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHH
T ss_pred eEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHH
Confidence 4667888887777 6665667776632 22222222221223333 34456678898764 33469999999999
Q ss_pred HHhcCCCCeEEEeCCCchhHHHHH--HhhcC-cccCe--eEEEeCC--C----CHHHHHHhhccCCceEEEEEcCCCCCc
Q 013210 132 MQLCSSGGHVVAARTLYGGTHALL--THFFP-RACNI--TTTFVDI--S----DHEMVNSAIVQGRTKVLYFESISNPTL 200 (447)
Q Consensus 132 ~~l~~~gd~Vi~~~~~y~~~~~~~--~~~~~-~~~g~--~~~~v~~--~----d~~~l~~~i~~~~t~lV~i~~~~NptG 200 (447)
.++++|||+|+..+..+++....- ....+ ...|. +...+.+ . |.+++++..+..++++|++-.-.+|
T Consensus 138 ~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~-- 215 (490)
T 3ou5_A 138 TALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA-- 215 (490)
T ss_dssp HHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSSCC--
T ss_pred HHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCccCc--
Confidence 999999999999998887654321 00000 00122 1221211 1 8899998776678999998654444
Q ss_pred cccCHHHHHHHHHhcCCEEEEeCCC-C-----CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh-----------
Q 013210 201 AVANIPELSRLAHDKGVTVVVDNTF-S-----PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA----------- 263 (447)
Q Consensus 201 ~v~~l~~I~~la~~~gi~livD~~~-~-----~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~----------- 263 (447)
...|.+++.++|++.|+++++|.+| . +...+|... +|+++.|.||.+.|| | ||++..++
T Consensus 216 r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-ADvVTtTTHKTLrGP--r-GG~Il~~~~~~~~~~k~~~ 291 (490)
T 3ou5_A 216 RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGA--R-SGLIFYRKGVKAVDPKTGR 291 (490)
T ss_dssp SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSSTTCSC--S-CEEEEEECSEEEECC--CC
T ss_pred cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ceEEeccccccccCC--C-ceEEEeccccccccccccc
Confidence 5779999999999999999999998 3 345577776 899999999999877 3 58887654
Q ss_pred ----HHHHHHHHHhhhhhhhcCCCccHHHHHHH--HccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhH
Q 013210 264 ----NLVNSMMDLHQGALMLLGPTMNPKVAFEL--SERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHE 336 (447)
Q Consensus 264 ----~~~~~l~~~~~~~~~~~g~~~~~~~a~~~--~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~ 336 (447)
++.+++...-.. +...|+-+...+|.+. ...+ +.+....++..++++.|++.|.+.|+++..-+...
T Consensus 292 ~~~~~~~kkin~aVFP-g~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdn----- 365 (490)
T 3ou5_A 292 EIPYTFEDRINFAVFP-SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDN----- 365 (490)
T ss_dssp EEECCCHHHHHHHHTT-TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS-----
T ss_pred hhHHHHHHHHHhhcCc-cccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCc-----
Confidence 455666553321 1234444444444332 1122 34667778889999999999999999877543222
Q ss_pred HHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013210 337 LLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 371 (447)
Q Consensus 337 l~~~~~~~~~g~g~~~~~~l~----~~~~~~~l~~~l~~ 371 (447)
.++.+.+. +...++..++...+
T Consensus 366 -------------HlvLvDl~~~g~tG~~ae~~Le~agI 391 (490)
T 3ou5_A 366 -------------HLVLVDLRPKGLDGARAERVLELVSI 391 (490)
T ss_dssp -------------SEEEEECGGGTCCHHHHHHHHHHTTE
T ss_pred -------------eEEEEeccccCCCHHHHHHHHHHcCc
Confidence 27777774 34456666666553
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-14 Score=143.20 Aligned_cols=209 Identities=11% Similarity=0.091 Sum_probs=137.9
Q ss_pred HHHHHHHHHHhCCCe---EEEeCChHHHHHHHHHHhcCC----CCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC--
Q 013210 102 LNLSRQMAALEGTEA---AYCTASGMSAISSVLMQLCSS----GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-- 172 (447)
Q Consensus 102 ~~l~~~ia~l~g~~~---~~~tsggt~A~~~al~~l~~~----gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~-- 172 (447)
+.+...+.+++|.+. .++++|+|.++++++.+.+++ ++.|+++...|.++...+. ..|+.+++++.
T Consensus 101 ~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~-----l~Gl~p~~v~~~~ 175 (450)
T 3bc8_A 101 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV-----TAGFEPVVIENVL 175 (450)
T ss_dssp HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEE
T ss_pred HHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHH-----HcCCeeEEEEeee
Confidence 456667777778654 489999985555555555443 7899999999999988873 36877777765
Q ss_pred -C-----CHHHHHHhhccC--CceEEEEEcC-CCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCC------ccCC-
Q 013210 173 -S-----DHEMVNSAIVQG--RTKVLYFESI-SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS------PARL- 235 (447)
Q Consensus 173 -~-----d~~~l~~~i~~~--~t~lV~i~~~-~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~------~~~~- 235 (447)
+ |+++|+++|++. +..++++.+| ++.+|.+.|+++|+++|++||+++|+|++|+. +.+. ..+.
T Consensus 176 ~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~ 255 (450)
T 3bc8_A 176 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 255 (450)
T ss_dssp ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHS
T ss_pred cCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhccc
Confidence 2 899999999432 2344444444 45567899999999999999999999999943 3221 1122
Q ss_pred CCeEEEeCCCccccCCCCeeEEEEE-cChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHH
Q 013210 236 GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALI 312 (447)
Q Consensus 236 g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~ 312 (447)
++|+++.|.||++..+-. |+++. .+++.++.+..... ...++.+....+..+. +.+.+.+.+++..+++++
T Consensus 256 ~AD~~v~S~HK~l~a~~~--~~~l~~rd~~~~~~~~~~~~----g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~ 329 (450)
T 3bc8_A 256 RIDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYP----GRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVY 329 (450)
T ss_dssp CCCEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSC----SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCccCCCchhc--cEEEEecCHHHHHHHHHHhh----cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999987643 25554 46666665543221 0011111233333322 223344455566777888
Q ss_pred HHHHHHhCC
Q 013210 313 FARRMKKLG 321 (447)
Q Consensus 313 l~~~L~~~~ 321 (447)
+++.|++++
T Consensus 330 l~~~l~~~~ 338 (450)
T 3bc8_A 330 LSTQLKKLA 338 (450)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhH
Confidence 888886653
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-15 Score=159.96 Aligned_cols=289 Identities=13% Similarity=0.135 Sum_probs=169.7
Q ss_pred CCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc-----CC------------CCeEEEeCCCchhH-HHHH
Q 013210 97 FNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLC-----SS------------GGHVVAARTLYGGT-HALL 155 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~-----~~------------gd~Vi~~~~~y~~~-~~~~ 155 (447)
.++...+|.++|+++.+ .+.++|++||++||..|++... .. ..+||.....||+. ...+
T Consensus 422 ~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gal 501 (831)
T 4a0g_A 422 VYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAM 501 (831)
T ss_dssp ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeee
Confidence 45666789999999987 4689999999999999997652 11 23788888888764 3333
Q ss_pred HhhcC---------ccc-Cee---------------EEEeCC------------CC------------------HHHHHH
Q 013210 156 THFFP---------RAC-NIT---------------TTFVDI------------SD------------------HEMVNS 180 (447)
Q Consensus 156 ~~~~~---------~~~-g~~---------------~~~v~~------------~d------------------~~~l~~ 180 (447)
..... .+. +.. ...++. .+ .+.|++
T Consensus 502 s~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 581 (831)
T 4a0g_A 502 EAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSK 581 (831)
T ss_dssp HTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHH
T ss_pred eccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHH
Confidence 21000 000 100 011110 12 256777
Q ss_pred hhc-------cCCceEEEEEcC-CCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----c--CCCCeEEE
Q 013210 181 AIV-------QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A--RLGADVVV 241 (447)
Q Consensus 181 ~i~-------~~~t~lV~i~~~-~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-----~--~~g~di~~ 241 (447)
.++ .+++++|++|.+ ++..|.+.+ +++|.++|++||+++|+||+++++.... . ....|++
T Consensus 582 ~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDii- 660 (831)
T 4a0g_A 582 HLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIA- 660 (831)
T ss_dssp HC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEE-
T ss_pred HHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEE-
Confidence 663 245789999997 899898875 8999999999999999999997653211 1 2235666
Q ss_pred eCCCccccCCCCeeEEEEEcChHHHHHHHHHhh-----hhhhhcCCCccHHHHHHHHccCC--cHHHHHHH----HHH-H
Q 013210 242 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----GALMLLGPTMNPKVAFELSERIP--HLGLRMKE----HCH-R 309 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-----~~~~~~g~~~~~~~a~~~~~~~~--~l~~~~~~----~~~-~ 309 (447)
+++|.+++...++ |++++++++++.+..... ...++.|++++..++.+.+..++ .+.+++++ +.+ .
T Consensus 661 -tlsK~L~gG~~Pl-gav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l 738 (831)
T 4a0g_A 661 -CFAKLLTGGMVPL-AVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELW 738 (831)
T ss_dssp -EECGGGGTTSSCC-EEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCS
T ss_pred -EEecccccCccCc-EEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4899999632688 899999999887753210 11223333333333333332211 11111111 110 1
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------HHHHHHHHHhhccccccccccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------~~~~~l~~~l~~~~~~g~~~vs 381 (447)
.+.+.+.+++++... ...|.|.++.+++... ..+..+...+... |++...
T Consensus 739 ~~~l~~~l~~~~~v~-------------------~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~---Gv~v~p 796 (831)
T 4a0g_A 739 DEELVQQISSHSAVQ-------------------RVVVIGTLFALELKADASNSGYASLYAKSLLIMLRED---GIFTRP 796 (831)
T ss_dssp CHHHHHHHHHSTTEE-------------------EEEEETTEEEEEEC---------CHHHHHHHHHHHHT---TEECCC
T ss_pred HHHHHHHHhhCCCce-------------------eEeecccEEEEEEecCccccccchHHHHHHHHHHHHC---CcEEEe
Confidence 123444555554311 1115788999998632 2355666666652 322211
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
. .+.|||++. ...+++.|+.+.++|++.-
T Consensus 797 ~-----------------------------g~~lrl~pp-~~~t~e~id~~~~~l~~~l 825 (831)
T 4a0g_A 797 L-----------------------------GNVIYLMCG-PCTSPEICRRLLTKLYKRL 825 (831)
T ss_dssp B-----------------------------TTEEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred c-----------------------------CCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence 1 267999987 6667777777777666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 447 | ||||
| d1y4ia1 | 397 | c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci | 3e-66 | |
| d2ctza1 | 421 | c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry | 1e-64 | |
| d1gc0a_ | 392 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom | 4e-64 | |
| d1pffa_ | 331 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom | 5e-57 | |
| d1e5ea_ | 394 | c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom | 7e-55 | |
| d1qgna_ | 398 | c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C | 7e-53 | |
| d1ibja_ | 380 | c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale | 7e-52 | |
| d1n8pa_ | 393 | c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba | 5e-51 | |
| d1cs1a_ | 384 | c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E | 4e-49 | |
| d1cl1a_ | 391 | c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche | 2e-37 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 2e-12 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 8e-08 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 1e-06 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 5e-06 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 7e-06 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 7e-05 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 2e-04 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 5e-04 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 0.001 |
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Score = 215 bits (549), Expect = 3e-66
Identities = 137/389 (35%), Positives = 210/389 (53%), Gaps = 20/389 (5%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
G ++ I ++TF E FA E +IY+R NPT L +++A LE
Sbjct: 22 STGALSTPIFQTSTFVFDSAEQGAARFALEESG----YIYTRLGNPTTDALEKKLAVLER 77
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
EA TASG+SAI++ L+ LC G H+V+A +YG THA L+H P+ I FVD
Sbjct: 78 GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAG 136
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232
E + +A+ + TKV+Y E+ +NPTL++ +I ++ +AH +G +VVDNTF SP P
Sbjct: 137 KPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQP 195
Query: 233 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
+LGAD+VVHS++K+I+G D+I G + G ++ G + G M+P A+
Sbjct: 196 LQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQAR--FVGLKDITGGCMSPFNAWLT 253
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGG 350
+ LG+RM+ HC AL AR ++ +V YPGL HP + + + GG
Sbjct: 254 LRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQY---ELGQRQMSLPGG 310
Query: 351 LLCLD-METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG 409
++ + E R++N + + +AVSLG ETL+ S T S + EE+ AG
Sbjct: 311 IISFEIAGGLEAGRRMINSV----ELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 366
Query: 410 ISAGLVRMSVGYLGTLDQRWSQFEKALSR 438
I+ GL+R+SVG L + + E A+ +
Sbjct: 367 ITDGLIRLSVG-LEDPEDIINDLEHAIRK 394
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Score = 212 bits (539), Expect = 1e-64
Identities = 114/417 (27%), Positives = 183/417 (43%), Gaps = 45/417 (10%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
+ I + ++ PE +FA + IYSR NPTV L +++AALEG
Sbjct: 17 TTLSRQVPIYPTTSYVFKSPEHAANLFALK----EFGNIYSRIMNPTVDVLEKRLAALEG 72
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
+AA TASG +A L L +G ++V+ LYGGT R
Sbjct: 73 GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE 132
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLS 231
E + +T+ + ESI NP L + ++ L++ A +KGV ++VDNTF +L
Sbjct: 133 RPEEFLALT-DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLR 191
Query: 232 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS----------------------- 268
P GA +V HS++K++ G +IAGA+ N
Sbjct: 192 PLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAF 251
Query: 269 -----MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL- 322
++ L G + P A+ + + L LR + H L A + +
Sbjct: 252 GELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQV 311
Query: 323 -KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAV 380
V YPGL HPHH+ + G +L ++ E A R ++ L+ +
Sbjct: 312 AWVNYPGLPHHPHHDRAQKYFKG--KPGAVLTFGLKGGYEAAKRFISRLKLIS----HLA 365
Query: 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 437
++G TL S+T S+L+ EE+A AG+S +VR+SVG L ++ ++ ++AL+
Sbjct: 366 NVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG-LEHVEDLKAELKEALA 421
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Score = 209 bits (533), Expect = 4e-64
Identities = 142/397 (35%), Positives = 200/397 (50%), Gaps = 20/397 (5%)
Query: 44 ALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLN 103
A+ G + + +ATFT E FAGE + YSR NPT+
Sbjct: 8 AIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNL 63
Query: 104 LSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC 163
L +MA+LEG EA ASGM AI+S L L G V+ TLYG T A L H
Sbjct: 64 LEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFL-HHGIGEF 122
Query: 164 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 223
+ VD++D + + +A+ T+V+YFES +NP + +A+I ++++A G TVVVDN
Sbjct: 123 GVKLRHVDMADLQALEAAM-TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDN 181
Query: 224 TF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 282
T+ +P + P LGAD+VVHS +K++SG DI AG V G LV+ + QG + G
Sbjct: 182 TYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGA 239
Query: 283 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK--KLGLKVLYPGLEDHPHHELLKS 340
++P A L I L LRM HC A + A + + YPGL P +
Sbjct: 240 VLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQY---TL 296
Query: 341 MANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399
+ GG++ +++ R MN LQ ++ AVSLG E+L S T S
Sbjct: 297 ARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSS 352
Query: 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436
EE+A GIS GLVR+SVG L +D + ++AL
Sbjct: 353 YTPEERAHYGISEGLVRLSVG-LEDIDDLLADVQQAL 388
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Score = 189 bits (480), Expect = 5e-57
Identities = 97/336 (28%), Positives = 161/336 (47%), Gaps = 14/336 (4%)
Query: 104 LSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC 163
L ++A LE EA TASGM AI++ + +G H+++ LYG THAL H +
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-F 61
Query: 164 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 223
+ F+D++ + + V + + + + + K + V+VDN
Sbjct: 62 GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121
Query: 224 TF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 282
TF SP++ +P LG D+VVHS +K+I+G D++ A + QG + G
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVV--AGLVCSRADIIAKVKSQGIKDITGA 179
Query: 283 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK--KLGLKVLYPGLEDHPHHELLKS 340
++P A+ ++ L +R+K A A + K KV YPGL DHP HE+ K
Sbjct: 180 IISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKK 239
Query: 341 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 400
FG ++ D++ EKA ++++ +AVSLG E+L+ S T + +
Sbjct: 240 Q---MKMFGSMIAFDVDGLEKAKKVLDNC----HVVSLAVSLGGPESLIQHPASMTHAGV 292
Query: 401 NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436
EE+ AG++ L+R+SVG + ++AL
Sbjct: 293 PKEEREAAGLTDNLIRLSVG-CENVQDIIDDLKQAL 327
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Score = 185 bits (470), Expect = 7e-55
Identities = 125/405 (30%), Positives = 204/405 (50%), Gaps = 21/405 (5%)
Query: 40 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNP 99
PA A A + + G I ++TF + FAG+ +IY+R NP
Sbjct: 4 TPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQ----ESGYIYTRLGNP 59
Query: 100 TVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFF 159
TV NL ++A LE TEA T+SGM AI++ ++ + +G H+++ LYG THAL H
Sbjct: 60 TVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHAL 119
Query: 160 PRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN-IPELSRLAHDKGVT 218
+ E+ ++ TK++YFE+ +NPTL + + +GV
Sbjct: 120 TKFGIQVDFINTAIPGEV--KKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVL 177
Query: 219 VVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL 277
V+ DNTF SP++ +P G DVVVHS +K+I+G D++AG +CG A+ G
Sbjct: 178 VIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKAD--LLQQIRMVGIK 235
Query: 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHH 335
+ G ++P A+ ++ + L +RMK A+ A +K KV YPG EDH H
Sbjct: 236 DITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGH 295
Query: 336 ELLKSMANKEYGFGGLLCLDM-ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS 394
++ + +G ++ + E A +L++ L+ +AVSLG E+L+ S
Sbjct: 296 DI---AKKQMRMYGSMITFILKSGFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPAS 348
Query: 395 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439
T + + EE+ AGI+ G++R+SVG + D+ + F++ L +
Sbjct: 349 MTHAVVPKEEREAAGITDGMIRLSVG-IEDADELIADFKQGLDAL 392
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 180 bits (457), Expect = 7e-53
Identities = 110/388 (28%), Positives = 187/388 (48%), Gaps = 21/388 (5%)
Query: 55 HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
+ + ++ + + + F Y R+ NPT + L +++ALEG
Sbjct: 27 TDAITTPVVNTSAYFFNKTSELIDFKEKRRAS----FEYGRYGNPTTVVLEEKISALEGA 82
Query: 115 EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174
E+ ASGM A + +L+ L +GGH+V Y T + P+ IT T +D +D
Sbjct: 83 ESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVIDPAD 141
Query: 175 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPA 233
+ A+ Q + + + ES +NP L +I +S+L H+KG V +D TF +PL
Sbjct: 142 VGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKAL 201
Query: 234 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS 293
LGAD+V+HS +KF+ G D++AG + GP LV+ + +LH +LG +NP A+ +
Sbjct: 202 ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH----HILGGALNPNAAYLII 257
Query: 294 ERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL 351
+ L LR+++ AL A ++ V YPGL+ HP H + K GFGG
Sbjct: 258 RGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---GFGGA 314
Query: 352 LCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 410
+ +++ + ++ L + ++A S G E+++ + +L+ ++A GI
Sbjct: 315 VSFEVDGDLLTTAKFVDAL----KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGI 370
Query: 411 SAGLVRMSVGYLGTLDQRWSQFEKALSR 438
LVR S G + D + +AL
Sbjct: 371 MDNLVRFSFG-VEDFDDLKADILQALDS 397
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 177 bits (449), Expect = 7e-52
Identities = 106/397 (26%), Positives = 187/397 (47%), Gaps = 29/397 (7%)
Query: 45 LASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNL 104
L + ++F ++ + +ATF ++ A E GP + Y+R NPT L
Sbjct: 7 LVNLDNKFDPFDAMSTPLYQTATF--------KQPSAIENGP----YDYTRSGNPTRDAL 54
Query: 105 SRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN 164
+A L+ + A+C SGM+A+S+ + L +G +VA +YGG+ LL+ PR+
Sbjct: 55 ESLLAKLDKADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV 113
Query: 165 ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 224
+ E+ + +TK+++ ES +NP +++I ++S +AH +G V+VDN+
Sbjct: 114 VVKRVNTTKLDEVAA--AIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNS 171
Query: 225 F-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT 283
SP++ P LGAD+V+HS +KFI+G +D++AG + + + Q G
Sbjct: 172 IMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ---NSEGSG 228
Query: 284 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSM 341
+ P + I + LR+++ A A + KV Y GL DHP H L S
Sbjct: 229 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQ 288
Query: 342 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 401
A + + L+ + ++ +AVS G ++L+S + + +
Sbjct: 289 AKGAGSVF---SFITGSVALSKHLVETTKYFS----IAVSFGSVKSLISMPCFMSHASIP 341
Query: 402 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438
AE + G++ LVR+S G + +D S + A
Sbjct: 342 AEVREARGLTEDLVRISAG-IEDVDDLISDLDIAFKT 377
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 175 bits (444), Expect = 5e-51
Identities = 98/402 (24%), Positives = 167/402 (41%), Gaps = 31/402 (7%)
Query: 48 ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQ 107
A HG V I S TF P + YSR NP NL R
Sbjct: 15 AGEHVDVHGSVIEPISLSTTFKQSSPANPI-----------GTYEYSRSQNPNRENLERA 63
Query: 108 MAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT 167
+AALE + +SG + +++L G H V+ +YGGTH T T+
Sbjct: 64 VAALENAQYGLAFSSGSATTATILQS-LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETS 122
Query: 168 TFVDISDHEMVNSAIVQGRTKVLYFESISNP----TLAVANIPELSRLAHDKGVTVVVDN 223
D+ + +++ TK+++ E+ +NP T + + A + V +VVDN
Sbjct: 123 FTNDLLNDLP---QLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179
Query: 224 TF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 282
TF SP + +P GAD+VVHS +K+I+G +D++ G + + + Q A +G
Sbjct: 180 TFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA---IGA 236
Query: 283 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA 342
+P A+ + L LR+++ A A + V+ H +
Sbjct: 237 IPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVL 296
Query: 343 NKEYGF--GGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399
+ GG++ ++ E A++ + + +A SLG E+L+ T
Sbjct: 297 KQHRDALGGGMISFRIKGGAEAASKFASST----RLFTLAESLGGIESLLEVPAVMTHGG 352
Query: 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441
+ E + +G+ LVR+SVG + D ++AL + +
Sbjct: 353 IPKEAREASGVFDDLVRISVG-IEDTDDLLEDIKQALKQATN 393
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Score = 170 bits (430), Expect = 4e-49
Identities = 110/401 (27%), Positives = 180/401 (44%), Gaps = 29/401 (7%)
Query: 44 ALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLN 103
A+ S ++ ++G V I S+T+ R YSR NPT
Sbjct: 7 AVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRA------------HDYSRRGNPTRDV 54
Query: 104 LSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC 163
+ R +A LEG A T +GMSAI V G +VA YGG++ L R C
Sbjct: 55 VQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC 114
Query: 164 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 223
+ + A + + K++ ES SNP L V +I ++ LA + G VVDN
Sbjct: 115 YRVLFVDQGDEQALR--AALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDN 172
Query: 224 TF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 282
TF SP + +P LGAD+V+HS +K+++G +D++AG V V + + + + G
Sbjct: 173 TFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGG 232
Query: 283 TMNPKVAFELSERIPHLGLRMKEHCHRALIFAR--RMKKLGLKVLYPGLEDHPHHELLKS 340
+ ++ L + L RM+ A + + + L K+ +P L ++ HE+
Sbjct: 233 AFD---SYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAAR 289
Query: 341 MANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 399
GFG +L +++ E+ R + L +A SLG E+L+S + + T +
Sbjct: 290 QQK---GFGAMLSFELDGDEQTLRRFLGGL----SLFTLAESLGGVESLISHAATMTHAG 342
Query: 400 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440
+ E +A AGIS L+R+S G + + + E
Sbjct: 343 MAPEARAAAGISETLLRISTG-IEDGEDLIADLENGFRAAN 382
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Score = 138 bits (349), Expect = 2e-37
Identities = 67/389 (17%), Positives = 140/389 (35%), Gaps = 17/389 (4%)
Query: 54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
G VN I+ +++ E + + Y R T +L + M LEG
Sbjct: 16 TLGAVNSVIQRASSLVFDSVEAKKHATRNRANGE---LFYGRRGTLTHFSLQQAMCELEG 72
Query: 114 TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173
G +A+++ ++ G HV+ T Y + + + T+ F +
Sbjct: 73 GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLI 132
Query: 174 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPA 233
++V + L + + + +++DNT++ VL A
Sbjct: 133 GADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKA 192
Query: 234 -RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 292
G DV + + +K++ G +D + G A + + L+G ++ A+
Sbjct: 193 LDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA----YLMGQMVDADTAYIT 248
Query: 293 SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGL--EDHPHHELLKSMANKEYGFGG 350
S + LG+R+++H +L A + + HE K G
Sbjct: 249 SRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFS 308
Query: 351 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 410
+ E+ ++ ++ MA S G YE+L+ + + + + +
Sbjct: 309 FVLKKKLNNEELANYLDNFSLFS----MAYSWGGYESLILANQPEHIAAIRPQGE--IDF 362
Query: 411 SAGLVRMSVGYLGTLDQRWSQFEKALSRM 439
S L+R+ +G L +D + + +R+
Sbjct: 363 SGTLIRLHIG-LEDVDDLIADLDAGFARI 390
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 65.9 bits (160), Expect = 2e-12
Identities = 46/226 (20%), Positives = 81/226 (35%), Gaps = 19/226 (8%)
Query: 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT--FVDISDH 175
T G A+ ++ + G V+ + ++ + T + D
Sbjct: 95 IVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDP 154
Query: 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFSPLV--- 229
E V AI RTK L S +NPT AV L L A + +V D + L+
Sbjct: 155 ERVRRAI-TPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
Query: 230 --LSPARLGAD--VVVHSISK-FISGGADIIAGAVCGPANLVNSMMDLHQGAL---MLLG 281
SP R+ + + V+ +K F G I G CGP ++ +M + + + +
Sbjct: 214 EHFSPGRVAPEHTLTVNGAAKAFAMTGWRI--GYACGPKEVIKAMASVSRQSTTSPDTIA 271
Query: 282 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 327
+ + + + + R + + LGLK + P
Sbjct: 272 QWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRP 317
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 51.7 bits (122), Expect = 8e-08
Identities = 38/248 (15%), Positives = 74/248 (29%), Gaps = 13/248 (5%)
Query: 99 PTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAAR-----TLYGGTHA 153
P + Q+ G + A T A +V+ L VV + A
Sbjct: 47 PIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERA 106
Query: 154 LLTHFFPRACNITTTFVDISDHE-MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA 212
L + + + + +G + + ++ +++++
Sbjct: 107 GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVC 166
Query: 213 HDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV----NS 268
+ V ++V+ ++ + + S S A G +
Sbjct: 167 SEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRR 226
Query: 269 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE---HCHRALIFARRMKKLGLKVL 325
+ LLG T L PH+ R+K +A FA M+KLG+K L
Sbjct: 227 SEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQL 286
Query: 326 YPGLEDHP 333
+H
Sbjct: 287 GDNPHNHD 294
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 48.2 bits (114), Expect = 1e-06
Identities = 17/173 (9%), Positives = 47/173 (27%), Gaps = 22/173 (12%)
Query: 67 TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSA 126
T + + ++ +G + Y+ + +L + + L G + T G A
Sbjct: 49 TDSGTNAMSDKQWAGMMIGDE----AYAG--SENFYHLEKTVKELFGFKHIVPTHQGRGA 102
Query: 127 ISSVLMQLCSSGGHVVAARTLYGGTHALLTH-----FFPRACNITTTFVDISDHEM---- 177
+ + G +V + R + ++
Sbjct: 103 ENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNK 162
Query: 178 -------VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 223
+ + + +++AN+ + +A G+ + D
Sbjct: 163 LATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA 215
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.1 bits (108), Expect = 5e-06
Identities = 40/310 (12%), Positives = 84/310 (27%), Gaps = 29/310 (9%)
Query: 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLM---QLCSSGGHVVAARTLYGGTHAL 154
N VLN+ + + +++ + +++ R
Sbjct: 97 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKS 156
Query: 155 LTHFFPRACNITTTFVD---ISDHEMVNSAI---VQGRTKVLYFESISNPTLAVANIPEL 208
+ I +D + V + I L+ + + EL
Sbjct: 157 MVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEEL 216
Query: 209 SRLAHDKGVTVVVDNTFS--------PLVLSPARLGADVVVHSISKFISGGADIIAGAVC 260
+ + + + VV+N + + D V S+ K
Sbjct: 217 AVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP--------V 268
Query: 261 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 320
G A + Q + + + ++ + LG +
Sbjct: 269 GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLST 328
Query: 321 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 380
LK L + + LL++ N L +D ++ +L + L G AV
Sbjct: 329 QLK----KLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAV 384
Query: 381 SLGYYETLMS 390
LG +T+
Sbjct: 385 PLGNVQTVSG 394
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 45.7 bits (107), Expect = 7e-06
Identities = 50/334 (14%), Positives = 107/334 (32%), Gaps = 36/334 (10%)
Query: 106 RQMAALEGTEAA--YCTASGMSAISSVLMQLC----SSGGHVVAARTLYGGTHALLTHFF 159
Q+A L G + T+ + + + G H++ ++T +
Sbjct: 55 NQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLE 114
Query: 160 PRACNITTTFVD---ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 216
+T I D + + +A+ + T ++ ++N V +I + + +G
Sbjct: 115 REGFEVTYLAPQRNGIIDLKELEAAM-RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARG 173
Query: 217 VTVVVD--NTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 274
+ VD + L + ++L D++ S K GA+ +
Sbjct: 174 IIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKI---YGPKGIGALYVRRKPRVRIEAQMH 230
Query: 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHP 333
G G + +G+ + + + GL L+ G++D
Sbjct: 231 GGGHERGMRSGTLPVHQ------IVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIE 284
Query: 334 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 393
L + + + +E E L + +AVS G T S
Sbjct: 285 EVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD----------LAVSSGSACTSASLEP 334
Query: 394 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 427
S L ++ ++ +R S+G T ++
Sbjct: 335 SYVLRALGLNDE----LAHSSIRFSLGRFTTEEE 364
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 42.8 bits (100), Expect = 7e-05
Identities = 30/283 (10%), Positives = 79/283 (27%), Gaps = 31/283 (10%)
Query: 83 ELGPDRDFFIYSRHFNPTVLNLSRQMAALEG------TEAAY--CTASGMSAISSVLMQL 134
R + ++ N L + + L + Y I +++ L
Sbjct: 84 VSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISL 143
Query: 135 --------CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGR 186
+ VVA Y +F + + VN
Sbjct: 144 SPNMTATPDAPESKVVAHAPFYPVFREQTKYF-----DKKGYVWAGNAANYVNV--SNPE 196
Query: 187 TKVLYFESISNPTLAVA-NIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSIS 245
+ S +NP + + + + +D V ++P+ D+++ ++S
Sbjct: 197 QYIEMVTSPNNPEGLLRHAVIKGCKSIYDM---VYYWPHYTPIKYKADE---DILLFTMS 250
Query: 246 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 305
KF A+ ++ N++++ P + ++ + + + K
Sbjct: 251 KFTGHSGSRFGWALIKDESVYNNLLNYMT-KNTEGTPRETQLRSLKVLKEVVAMVKTQKG 309
Query: 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 348
F + + + L+ + ++ +
Sbjct: 310 TMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNY 352
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 40.9 bits (95), Expect = 2e-04
Identities = 41/266 (15%), Positives = 82/266 (30%), Gaps = 31/266 (11%)
Query: 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFF--PRACNITTTFVDISDH 175
T G +I ++++ + G V+ + ++ P T
Sbjct: 94 LVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSP 153
Query: 176 EMVNSAIVQGRTKVLYFESISNPT---LAVANIPELSRLAHDKGVTVVVDNTF------- 225
E + AI +TK+L F + SNPT + ++++A + G+ V+ D +
Sbjct: 154 EQIRQAITP-KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDD 212
Query: 226 ----SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG 281
S SP VV +K G + GP LV + + +
Sbjct: 213 AQHLSIGAASPEAYERSVVCSGFAK-TYAMTGWRVGFLAGPVPLVKAATKIQGHSTS--- 268
Query: 282 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSM 341
+ + + E+ + + + L P E K
Sbjct: 269 ---------NVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD 319
Query: 342 ANKEYGFGGLLCLDMETEEKANRLMN 367
Y F + + + + L++
Sbjct: 320 GAF-YMFPSIAKTGRSSLDFCSELLD 344
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 39.8 bits (91), Expect = 5e-04
Identities = 25/114 (21%), Positives = 34/114 (29%), Gaps = 8/114 (7%)
Query: 64 ASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASG 123
S T T E + M E+G D +Y +PT+ L R A G EAA SG
Sbjct: 5 RSDTVTKPTEEMRKAMAQAEVGDD----VYGE--DPTINELERLAAETFGKEAALFVPSG 58
Query: 124 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM 177
+M G V+ + V + M
Sbjct: 59 TMGNQVSIMAHTQRGDEVILEA--DSHIFWYEVGAMAVLSGVMPHPVPGKNGAM 110
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 39.1 bits (90), Expect = 0.001
Identities = 21/173 (12%), Positives = 43/173 (24%), Gaps = 33/173 (19%)
Query: 77 RRMFAG-ELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLC 135
+ M A G + +S + + L+ + + G + T G A + L
Sbjct: 57 QSMQAAMMRGDEA----FSG--SRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLI 110
Query: 136 SSGGHVVAARTLYGGTHALLTH----------------------FFPRACNITTTFVDIS 173
+ F D+
Sbjct: 111 KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLE 170
Query: 174 DHEMVNSAIVQGRTKVLYFESISN----PTLAVANIPELSRLAHDKGVTVVVD 222
E + + SN +++AN+ + +A + VV+D
Sbjct: 171 GLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMD 223
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 100.0 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 100.0 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 100.0 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 100.0 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 100.0 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 100.0 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 100.0 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 100.0 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.97 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.97 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.97 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.97 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.97 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.96 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.96 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.96 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.95 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.95 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.95 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.95 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.95 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.95 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.95 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.95 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.94 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.94 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.94 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.94 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.94 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.94 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.94 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.94 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.94 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.94 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.93 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.92 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.91 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.9 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.89 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.89 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.89 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.89 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.88 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.87 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.87 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.86 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.85 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.85 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.85 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.85 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.84 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.84 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.83 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.81 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.81 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.8 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.8 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.79 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.77 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.77 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.77 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.77 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.76 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.76 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.75 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.75 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.74 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.73 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.73 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.71 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.7 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.69 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.69 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.67 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.66 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.65 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.65 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.61 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.57 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.45 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.93 |
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=100.00 E-value=2e-67 Score=512.49 Aligned_cols=386 Identities=36% Similarity=0.577 Sum_probs=358.9
Q ss_pred CCCCchhhHhhh-cCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC
Q 013210 36 AAWEDPAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114 (447)
Q Consensus 36 ~~~~~~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~ 114 (447)
.+++.|.|.++| |+.....+|+|+||||.||||.+++.+++.+.+... ...|.|+|.+||++..||+.||.++|+
T Consensus 3 ~k~~~f~T~~ih~G~~~~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~----~~~~~Y~R~~nPT~~~LE~~la~LEgg 78 (397)
T d1y4ia1 3 CRTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERG 78 (397)
T ss_dssp GGGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSC----SSSSCCCTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCccceeEeCCCCCCCCCCCccCCccCCCCeeeCCHHHHHHhhcCC----cCCceeeCCCCHHHHHHHHHHHHHhCC
Confidence 356789999999 455566779999999999999999999998888764 456999999999999999999999999
Q ss_pred CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEc
Q 013210 115 EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 194 (447)
Q Consensus 115 ~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~ 194 (447)
+.+++++||+.|+.+++.+++++||+|+++...|+++...+...+++ .|+++++++..|++++++++ +++|++|++|+
T Consensus 79 ~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~-~Gi~~~~vd~~d~~~~~~~i-~~~Tklv~~Es 156 (397)
T d1y4ia1 79 EAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAGKPEEIRAAM-RPETKVVYIET 156 (397)
T ss_dssp SEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHH-TTCEEEEECTTSHHHHHHHC-CTTEEEEEEES
T ss_pred ccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCC-CceEeeccCCCCHHHHHHhc-CCCCcEEEecC
Confidence 99999999999999999999999999999999999999999888887 89999999999999999999 88999999999
Q ss_pred CCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHH--H
Q 013210 195 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM--D 271 (447)
Q Consensus 195 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~--~ 271 (447)
|.||+..+.|+++|+++||++|+++++|+++ +++.++|.++|+|++++|++|+++|+++.+||+++++++.+.+++ .
T Consensus 157 p~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~ 236 (397)
T d1y4ia1 157 PANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVG 236 (397)
T ss_dssp SCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTH
T ss_pred CcccceeecccHHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 889999999999999999999999999999999999998876543 3
Q ss_pred HhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013210 272 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG 349 (447)
Q Consensus 272 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g 349 (447)
.+. ..|..+++..|++++++++++..|++++.+++..++++|++++. +|.||+++++|+|++|++++. |+|
T Consensus 237 ~~~----~~G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~---g~g 309 (397)
T d1y4ia1 237 LKD----ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS---LPG 309 (397)
T ss_dssp HHH----TTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCS---SCC
T ss_pred HHh----CcCCcCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccC---CCC
Confidence 344 57999999999999999999999999999999999999999987 899999999999999999987 689
Q ss_pred cEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013210 350 GLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 428 (447)
Q Consensus 350 ~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~ 428 (447)
++++|.+.+ .+.+.+|++.|+. |. +++|+|+.+|++++|+.++|..++++++..+|+++++||||+| .|+++++
T Consensus 310 g~~sf~~~~~~~~~~~f~~~L~l---~~-~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvG-lEd~~DL 384 (397)
T d1y4ia1 310 GIISFEIAGGLEAGRRMINSVEL---CL-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG-LEDPEDI 384 (397)
T ss_dssp SEEEEEETTHHHHHHHHHHTCSS---SE-ECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHHHH
T ss_pred eEEEEEecCCHHHHHHHHHcCCc---cc-eeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEec-cCCHHHH
Confidence 999999985 4557899999997 33 6999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHh
Q 013210 429 WSQFEKALSRM 439 (447)
Q Consensus 429 i~~l~~al~~~ 439 (447)
|++|.+||++.
T Consensus 385 i~Dl~~AL~~a 395 (397)
T d1y4ia1 385 INDLEHAIRKA 395 (397)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999874
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=8.4e-67 Score=507.89 Aligned_cols=382 Identities=37% Similarity=0.543 Sum_probs=321.8
Q ss_pred chhhHhhh-cCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEE
Q 013210 40 DPAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY 118 (447)
Q Consensus 40 ~~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~ 118 (447)
.|.|+++| |+.....+|+|+||||.+|||.+++.+++.+.+.+. ...|.|+|.+||+++.||++||+++|++.++
T Consensus 3 g~~T~~vH~G~~~~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~----~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~ 78 (392)
T d1gc0a_ 3 GFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLEGGEAGL 78 (392)
T ss_dssp CHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC-------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred CcchhceeCCCCCCCCCCCeeCCccCCCCEeeCCHHHHHHhhcCC----cCCceecCCCChHHHHHHHHHHHHhCCccee
Confidence 46788888 555566779999999999999999988877766543 5678999999999999999999999999999
Q ss_pred EeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCC
Q 013210 119 CTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 198 (447)
Q Consensus 119 ~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Np 198 (447)
+++||+.|+.+++.+++++||+|+++...|+++...+...+++ .|+++.++|..|++++++++ +++|++|++|+|.||
T Consensus 79 ~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~-~Gi~~~~~d~~d~~~~~~ai-~~~t~lv~~Esp~NP 156 (392)
T d1gc0a_ 79 ALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAM-TPATRVIYFESPANP 156 (392)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESSCTT
T ss_pred ehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhcc-CCcccccCCccCHHHHHHhC-CCCCeEEEecccccc
Confidence 9999999999999999999999999999999999999888887 89999999999999999999 889999999999999
Q ss_pred CccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHH--HHhhh
Q 013210 199 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM--DLHQG 275 (447)
Q Consensus 199 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~--~~~~~ 275 (447)
++.+.||++|+++||++|+++++|+++ +++.++|.++|+|++++|++|+++|+++.+||+++++++.+.+++ ..+.
T Consensus 157 ~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~- 235 (392)
T d1gc0a_ 157 NMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD- 235 (392)
T ss_dssp TCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH-
T ss_pred eeeecchHHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHH-
Confidence 999999999999999999999999999 788899999999999999999999999999999999998877654 3344
Q ss_pred hhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 276 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 276 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
..|..+++..|++++++++++..|++++.+++..++++|++++. +|+||+++++|+|+++++++. +.|++++
T Consensus 236 ---~~G~~~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---~~gg~~s 309 (392)
T d1gc0a_ 236 ---MTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS---QPGGMIA 309 (392)
T ss_dssp ---HTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-------------------CCTTEEE
T ss_pred ---ccCCcCChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCccccccccccc---CCCcEEE
Confidence 67999999999999999999999999999999999999999987 899999999999999999987 5789999
Q ss_pred EEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013210 354 LDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF 432 (447)
Q Consensus 354 ~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l 432 (447)
|.+. +.+.+.+|++.|+.. . +++|+|+++|++++|+.++|..++++++..+|+++++||||+| .|+.+++|++|
T Consensus 310 f~l~~~~~~~~~f~~~L~l~---~-~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVG-lEd~eDLi~Dl 384 (392)
T d1gc0a_ 310 FELKGGIGAGRRFMNALQLF---S-RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG-LEDIDDLLADV 384 (392)
T ss_dssp EEETTHHHHHHHHHHHCSSS---E-ECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHhCCcc---e-EeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEee-eCCHHHHHHHH
Confidence 9997 446678999999973 3 6999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHh
Q 013210 433 EKALSRM 439 (447)
Q Consensus 433 ~~al~~~ 439 (447)
.+||++.
T Consensus 385 ~~AL~aa 391 (392)
T d1gc0a_ 385 QQALKAS 391 (392)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999864
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=100.00 E-value=3.5e-65 Score=498.59 Aligned_cols=388 Identities=34% Similarity=0.564 Sum_probs=358.4
Q ss_pred CCCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe
Q 013210 37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA 116 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~ 116 (447)
|.|.|.|+++|+.++.+.+|+++||||.+|||.+++.+++.+.+.+. ...|.|+|..||+++.||+.||+++|++.
T Consensus 1 ~~~~~~T~~vh~g~~~d~~gav~~PI~~sst~~~~~~~~~~~~~~~~----~~~~~YsR~~nPT~~~le~~la~LEg~~~ 76 (394)
T d1e5ea_ 1 ERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQ----ESGYIYTRLGNPTVSNLEGKIAFLEKTEA 76 (394)
T ss_dssp CCCCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTS----SCSCCBTTTCCHHHHHHHHHHHHHHTCSE
T ss_pred CCCCHHHHheeCCCCCCCCCCeeCCccCCCCeeeCCHHHHHHhhcCC----cCCceecCCCCHHHHHHHHHHHHHhCCcc
Confidence 46789999999877778899999999999999999999998888765 45699999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 117 AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 117 ~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
++.++||+.|+.+++.+++++||+|+++...|+++...+...+++ .|+++.+++..|++++++++ +++|++|++|+|.
T Consensus 77 a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~-~gi~~~~~d~~d~~~~~~~i-~~~t~lv~~Etp~ 154 (394)
T d1e5ea_ 77 CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTK-FGIQVDFINTAIPGEVKKHM-KPNTKIVYFETPA 154 (394)
T ss_dssp EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHHC-CTTEEEEEEESSC
T ss_pred eeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhc-cceeeeccCCCCHHHHHHhh-cccccEEEEeccC
Confidence 999999999999999999999999999999999999999888887 89999999999999999999 8899999999999
Q ss_pred CCCccccCHHHHHHHHHh-cCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh
Q 013210 197 NPTLAVANIPELSRLAHD-KGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 274 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~-~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~ 274 (447)
||+..+.|++++.+++++ +|+++++|+++ +++.++|.++|+|++++|++|+++|+++.+||+++++++.+...+...
T Consensus 155 NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~- 233 (394)
T d1e5ea_ 155 NPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG- 233 (394)
T ss_dssp TTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC-
T ss_pred CcceeeehhhhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHH-
Confidence 999999999999887764 68999999999 889999999999999999999999999999999999988776654321
Q ss_pred hhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013210 275 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL 352 (447)
Q Consensus 275 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~ 352 (447)
.....|..+++..|++++++++++..|++++.+++..++++|++++. +|+||+++++|+|++++++++ |+|+++
T Consensus 234 -~~~~~G~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---~~G~~~ 309 (394)
T d1e5ea_ 234 -IKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR---MYGSMI 309 (394)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCS---SCCSEE
T ss_pred -HHHhhCCCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccc---cCCCee
Confidence 11267999999999999999999999999999999999999999987 899999999999999999987 689999
Q ss_pred EEEeCCH-HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 353 CLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 353 ~~~l~~~-~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
+|.+.+. +.+.+|++.|+.. . +++|+|+++|++++|++++|..+++++++.+|+++++||||+| .|+++++|++
T Consensus 310 sf~~~~~~~~a~~f~~~l~l~---~-~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVG-lEd~eDLi~D 384 (394)
T d1e5ea_ 310 TFILKSGFEGAKKLLDNLKLI---T-LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-IEDADELIAD 384 (394)
T ss_dssp EEEETTHHHHHHHHHHTCSSS---E-ESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC-SSCHHHHHHH
T ss_pred eeeccCCHHHHHHHHHhCCcc---c-eeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEec-cCCHHHHHHH
Confidence 9998854 5688999999973 3 6999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHhh
Q 013210 432 FEKALSRMQ 440 (447)
Q Consensus 432 l~~al~~~~ 440 (447)
|++||+++.
T Consensus 385 l~qAl~~l~ 393 (394)
T d1e5ea_ 385 FKQGLDALL 393 (394)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999874
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=100.00 E-value=6.5e-65 Score=495.48 Aligned_cols=382 Identities=29% Similarity=0.494 Sum_probs=352.3
Q ss_pred hhhHhhh-cCC--CCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 41 PAAALAS-ARH--EFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 41 ~~~~~~~-~~~--~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
..|..+| |+. +...+|+++||||.+|||.+++.+++.+.+.+. ...|.|+|.+||+.+.||++||+++|++.+
T Consensus 10 ~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~----~~~~~Y~R~~nPt~~~LE~~la~LEgg~~a 85 (398)
T d1qgna_ 10 DGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKR----RASFEYGRYGNPTTVVLEEKISALEGAEST 85 (398)
T ss_dssp HHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTS----SCCCCBGGGCCHHHHHHHHHHHHHHTCSEE
T ss_pred CccEEEeCCCcCCCCCCCCCccCCeeCCCcEEeCCHHHHHHHhcCC----cCCceecCCCChHHHHHHHHHHHHhCCceE
Confidence 4566666 543 223569999999999999999999988888664 557999999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 197 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~N 197 (447)
++++||+.|+..++.+++++||+|+++...|+++...+..++++ .|+++.+++..+.++.++.+.+++|++|++|+|.|
T Consensus 86 ~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~-~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~EspsN 164 (398)
T d1qgna_ 86 LLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVIDPADVGALELALNQKKVNLFFTESPTN 164 (398)
T ss_dssp EEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECSSCHHHHHHHHHHSCEEEEEEESSCT
T ss_pred EEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccc-cccccccccccchhhhhhhhccccceEEEccCccc
Confidence 99999999999999999999999999999999999999888887 89999999977777666544378999999999999
Q ss_pred CCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh
Q 013210 198 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 276 (447)
Q Consensus 198 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~ 276 (447)
|+..+.|+++|+++||++|++++||+++ +++.++|+++|+|++++|++|+++|+++.+||+++.+++++..++..+.
T Consensus 165 P~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~-- 242 (398)
T d1qgna_ 165 PFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHH-- 242 (398)
T ss_dssp TTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHH--
T ss_pred cccccchHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcc--
Confidence 9999999999999999999999999999 8899999999999999999999999999999999999999988887776
Q ss_pred hhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013210 277 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 354 (447)
Q Consensus 277 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 354 (447)
..|..+++..|++++++++++..|++++.+++..++++|++++. +|+||+++++|+|++++++++ |+|++++|
T Consensus 243 --~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~---g~g~~~sf 317 (398)
T d1qgna_ 243 --ILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---GFGGAVSF 317 (398)
T ss_dssp --HHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCS---CCCSEEEE
T ss_pred --cCCCcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcC---CCCceeee
Confidence 78999999999999999999999999999999999999999987 899999999999999999987 78999999
Q ss_pred EeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013210 355 DME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE 433 (447)
Q Consensus 355 ~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~ 433 (447)
.+. +.+.+.+|++.|+.. . +++|+|+++|+++||++++|..++.+++..+|+++++||||+| .|+.+++|++|.
T Consensus 318 ~~~g~~~~a~~f~~~L~l~---~-~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG-lEd~eDLi~Dl~ 392 (398)
T d1qgna_ 318 EVDGDLLTTAKFVDALKIP---Y-IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-VEDFDDLKADIL 392 (398)
T ss_dssp EESSCHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-SSCHHHHHHHHH
T ss_pred eecCCHHHHHHHHHcCCcc---e-eeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEec-cCCHHHHHHHHH
Confidence 997 677889999999863 3 6999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHh
Q 013210 434 KALSRM 439 (447)
Q Consensus 434 ~al~~~ 439 (447)
+||+++
T Consensus 393 ~AL~~i 398 (398)
T d1qgna_ 393 QALDSI 398 (398)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 999875
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.2e-65 Score=493.58 Aligned_cols=374 Identities=30% Similarity=0.431 Sum_probs=346.9
Q ss_pred hhhHhhh-cCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 41 PAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 41 ~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
|.|.++| |+.....+|+++||||.||||.+++.++ ...|.|+|.+||+++.||++||+++|++.+++
T Consensus 3 ~~T~~vh~G~~~~~~~gav~pPI~~sst~~~~~~~~------------~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~ 70 (384)
T d1cs1a_ 3 QATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNE------------PRAHDYSRRGNPTRDVVQRALAELEGGAGAVL 70 (384)
T ss_dssp HHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTB------------CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred hhhheeeCCCCCCCCCCCccCCccCCCCeecCCCCc------------ccCCcccCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 6677777 6666678999999999999999987532 24589999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
++|||.|+..++.+++++||+|+++...|+++...+...+++ .|+.+.+++..|.++++.++ +++|++|++|+|.||+
T Consensus 71 ~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~-~g~~~~~~d~~d~~~~~~~~-~~~t~~v~~EspsNP~ 148 (384)
T d1cs1a_ 71 TNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVESPSNPL 148 (384)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTT-TSCEEEEECTTCHHHHHHHH-HTCCSEEEEECSCTTT
T ss_pred ecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcc-cccccccccCCCHHHHHhhc-cccccEEEEecccccc
Confidence 999999999999999999999999999999999999888887 89999999999999999999 8899999999999999
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhh
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL 277 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~ 277 (447)
..+.|+++|+++||++|++++||+++ +++.++|.++|+|++++|++|+++|+|+.+||+++. ++++.+.+...+.
T Consensus 149 l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~--- 225 (384)
T d1cs1a_ 149 LRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN--- 225 (384)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH---
T ss_pred ceeccHHHHhhhhhhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhh---
Confidence 99999999999999999999999999 889999999999999999999999999999998877 4566667766666
Q ss_pred hhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013210 278 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD 355 (447)
Q Consensus 278 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~ 355 (447)
..|..+++..|++++++++++..|++++.+++..++++|+.++. +|+||+++++|+|++++++++ |+|++++|.
T Consensus 226 -~~G~~~~p~~a~ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~---g~gg~~sf~ 301 (384)
T d1cs1a_ 226 -NIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGAMLSFE 301 (384)
T ss_dssp -HHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEEEEE
T ss_pred -hhhhccccccHHHHhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcC---CCcceeEEe
Confidence 78999999999999999999999999999999999999999987 899999999999999999986 789999999
Q ss_pred eC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013210 356 ME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK 434 (447)
Q Consensus 356 l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~ 434 (447)
+. +.+.+.+|++.|+. |. +++|+|+.+|++++|++++|..++++++..+|+++++||||+| .|+++++|++|++
T Consensus 302 l~~~~~~a~~f~~~L~l---~~-~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvG-lEd~eDLi~Dl~~ 376 (384)
T d1cs1a_ 302 LDGDEQTLRRFLGGLSL---FT-LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIADLEN 376 (384)
T ss_dssp ESSCHHHHHHHHHTCSS---SE-EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHH
T ss_pred ecchHHHHHHHHHhCCc---ce-eccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHH
Confidence 97 66778899999997 33 6999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHhh
Q 013210 435 ALSRMQ 440 (447)
Q Consensus 435 al~~~~ 440 (447)
||+++.
T Consensus 377 AL~aa~ 382 (384)
T d1cs1a_ 377 GFRAAN 382 (384)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999875
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.9e-64 Score=490.53 Aligned_cols=372 Identities=29% Similarity=0.475 Sum_probs=347.2
Q ss_pred hhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEe
Q 013210 41 PAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120 (447)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~t 120 (447)
+.|.++|+....+.+|++++|||.+|||.+++..+ ...|.|+|.+||+++.||++||.++|++.++.+
T Consensus 3 ~~t~~~h~~~~~dp~ga~~~PI~~sstf~~~~~~~------------~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~f 70 (380)
T d1ibja_ 3 VSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIE------------NGPYDYTRSGNPTRDALESLLAKLDKADRAFCF 70 (380)
T ss_dssp HHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSC------------CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HhHhhhcCCCCCCCCCCccCCccCCcceecCCCCc------------cCCceeeCCCChHHHHHHHHHHHHcCCceEEeh
Confidence 67899998888888999999999999999987521 346899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCc
Q 013210 121 ASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTL 200 (447)
Q Consensus 121 sggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG 200 (447)
+|||.|+. ++.+++++||+|+++...|+++...+...+++ .|+++.+++..+++++++++ +++|++|++|+|.||++
T Consensus 71 sSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~-~gi~~~~~d~~~~~~~~~ai-~~~t~li~~EtpsNP~l 147 (380)
T d1ibja_ 71 TSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTKLDEVAAAI-GPQTKLVWLESPTNPRQ 147 (380)
T ss_dssp SSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGG-GTCEEEEECTTSHHHHHHHC-CSSEEEEEECSSCTTTC
T ss_pred hhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhcc-ccccccccCcchHHHHHHHh-ccCccEEEecccccccc
Confidence 99999996 56788999999999999999999999888888 89999999999999999999 88999999999999999
Q ss_pred cccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHhhhhhh
Q 013210 201 AVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM 278 (447)
Q Consensus 201 ~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~ 278 (447)
.+.|+++|+++||++|+++|+|+++ +++.++|.++|+|++++|++|+++|+++.+||+++.+ +++.+.++..+.
T Consensus 148 ~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~---- 223 (380)
T d1ibja_ 148 QISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN---- 223 (380)
T ss_dssp CCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHcCCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhcc----
Confidence 9999999999999999999999999 7888999999999999999999999999999998665 566777777666
Q ss_pred hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013210 279 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 356 (447)
Q Consensus 279 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l 356 (447)
..|..+++..|++++++++++..|++++.+++..++++|++++. +|+||+++++|+|++++++++ ++|++++|.+
T Consensus 224 ~~G~~l~p~~a~ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~---~~g~~~s~~~ 300 (380)
T d1ibja_ 224 SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK---GAGSVFSFIT 300 (380)
T ss_dssp HTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCS---CCCSEEEEEC
T ss_pred ccCCcCCHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccc---cccccccccc
Confidence 78999999999999999999999999999999999999999987 899999999999999999886 6889999999
Q ss_pred CCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 357 ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 357 ~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
.+.+.+.+|++.|+.. . +++|+|+.+|++++|+.++|..++.++++.+|+++++||||+| .|+.+++|++|++||
T Consensus 301 ~~~~~a~~f~d~l~l~---~-~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvG-lE~~eDLi~Dl~qAl 375 (380)
T d1ibja_ 301 GSVALSKHLVETTKYF---S-IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLISDLDIAF 375 (380)
T ss_dssp SCHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECC-SSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCcC---e-EeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEec-cCCHHHHHHHHHHHH
Confidence 9888899999999863 3 7999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHh
Q 013210 437 SRM 439 (447)
Q Consensus 437 ~~~ 439 (447)
+.+
T Consensus 376 ~~l 378 (380)
T d1ibja_ 376 KTF 378 (380)
T ss_dssp HSC
T ss_pred Hhc
Confidence 876
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.9e-64 Score=493.71 Aligned_cols=385 Identities=30% Similarity=0.435 Sum_probs=345.0
Q ss_pred CchhhHhhh-cCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeE
Q 013210 39 EDPAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117 (447)
Q Consensus 39 ~~~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~ 117 (447)
|.|.|+++| |+.....+|+++||||.|+||.+++.+++.+.+.+. ...|.|+|.+||+.+.||++||.++|++.+
T Consensus 1 mk~~T~~vh~g~~~~~~~gsv~pPI~~sstf~~~~~~~~~~~~~~~----~~~~~YsR~~nPT~~~LE~~la~LE~~~~a 76 (421)
T d2ctza1 1 MRFETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALK----EFGNIYSRIMNPTVDVLEKRLAALEGGKAA 76 (421)
T ss_dssp CCHHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTTT----TGGGSCBTTBCHHHHHHHHHHHHHHTCSEE
T ss_pred CChhHhheeCCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhcCC----cCCceecCCCCHHHHHHHHHHHHHhCCCeE
Confidence 458889998 555556679999999999999999999999888765 457999999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCC-HHHHHHhhccCCceEEEEEcCC
Q 013210 118 YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD-HEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 118 ~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d-~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
+.++||+.|+.+++.+++++||+||++...|+++...+...+++ .|+++.+++..+ .+.+++.+ +++|++|++|+|.
T Consensus 77 ~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~-~gi~~~~~d~~~~~~~~~~~~-~~~t~li~~Etps 154 (421)
T d2ctza1 77 LATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREERPEEFLALT-DEKTRAWWVESIG 154 (421)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHH-TTCEEEECCTTCCHHHHHHHC-CTTEEEEEEESSC
T ss_pred EEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhh-ccccceecccccCcchhcccc-CCCceEEEEcCCC
Confidence 99999999999999999999999999999999999999888887 899999998765 45666667 8899999999999
Q ss_pred CCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHH---------
Q 013210 197 NPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--------- 265 (447)
Q Consensus 197 NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~--------- 265 (447)
||+..+.|+++|+++||++|+++++|+++ +++.++|+++|+|++++|++|+++|+++.+||+++.+++.
T Consensus 155 NP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~ 234 (421)
T d2ctza1 155 NPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPL 234 (421)
T ss_dssp TTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHH
T ss_pred cceeEecchHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhccccc
Confidence 99999999999999999999999999998 3678899999999999999999999999999999864321
Q ss_pred -------------HH------HHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--ee
Q 013210 266 -------------VN------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KV 324 (447)
Q Consensus 266 -------------~~------~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v 324 (447)
.+ .+.+.+.......|..+++..|++++++++++..|++++.+++..++++|++++. +|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V 314 (421)
T d2ctza1 235 LTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWV 314 (421)
T ss_dssp HHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred ccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEE
Confidence 11 1122222233357999999999999999999999999999999999999999987 89
Q ss_pred eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHH
Q 013210 325 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403 (447)
Q Consensus 325 ~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~ 403 (447)
+||+++++|+|++|++++.+ ++|++++|.+. +.+.+.+|++.|+.. . +++|+|+.+|++++|+.++|..++++
T Consensus 315 ~yPgL~s~p~~~~a~~~~~g--~~G~~~sf~l~~~~~~a~~f~~~L~l~---~-~a~SlGg~eSLi~~pa~~th~~~~~e 388 (421)
T d2ctza1 315 NYPGLPHHPHHDRAQKYFKG--KPGAVLTFGLKGGYEAAKRFISRLKLI---S-HLANVGDTRTLAIHPASTTHSQLSPE 388 (421)
T ss_dssp ECTTSTTCTTHHHHHHHHTT--CCCSEEEEEETTHHHHHHHHHHTCSSS---E-ECSCCCCSSCEEECGGGTTTTTSCHH
T ss_pred ecCCcCCCccHHHHHHhcCC--CCceEEEEEecCCHHHHHHHHHcCCcC---e-eccccccccceeeCcccccchhCCHH
Confidence 99999999999999999975 46889999997 456688999999973 3 69999999999999999999999999
Q ss_pred HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 404 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 404 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
++..+|+++++||||+| .|+.+++|++|.+||
T Consensus 389 ~r~~~GI~~~liRlSvG-lEd~eDLi~DL~qAL 420 (421)
T d2ctza1 389 EQAQAGVSPEMVRLSVG-LEHVEDLKAELKEAL 420 (421)
T ss_dssp HHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHT
T ss_pred HHHhcCCCcCeEEEEec-cCCHHHHHHHHHHhc
Confidence 99999999999999999 999999999999997
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-62 Score=480.11 Aligned_cols=380 Identities=21% Similarity=0.367 Sum_probs=345.7
Q ss_pred hhhHhhhc-CCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Q 013210 41 PAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC 119 (447)
Q Consensus 41 ~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~ 119 (447)
|.|+++|+ +.....+|+++||||.++||.+++.+++...+.+. ..+.|.|+|..||+++.+|++||+++|++.++.
T Consensus 2 ~~T~~vh~g~~~~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~---~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~ 78 (391)
T d1cl1a_ 2 LDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNR---ANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL 78 (391)
T ss_dssp HHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTT---TTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred cccceecCCCCCCCCCCCccCCeeCCCceeeCCHHHHHHHhcCC---ccCceEeECCCChhHHHHHHHHHHHhCCccEEE
Confidence 67888885 44455789999999999999999998888777654 134588999999999999999999999999999
Q ss_pred eCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 120 TASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 120 tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
++|||.|+.+++.+++++||+||++...|+++...+...+++ .|+++.+++..|.+++++++ +++|++|++|+|.||+
T Consensus 79 ~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~-~Gi~~~~~d~~d~~~~~~~i-~~~t~~i~~EtpsNP~ 156 (391)
T d1cl1a_ 79 FPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFDPLIGADIVKHL-QPNTKIVFLESPGSIT 156 (391)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECTTCGGGGGGTC-CTTEEEEEEESSCTTT
T ss_pred eccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccc-cccccccccCcccccccccc-ccccceeeecccCccc
Confidence 999999999999999999999999999999999999888887 89999999999999999999 8899999999999999
Q ss_pred ccccCHHHHHHHHHh--cCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh
Q 013210 200 LAVANIPELSRLAHD--KGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 276 (447)
Q Consensus 200 G~v~~l~~I~~la~~--~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~ 276 (447)
..+.|+++|+++|++ +|+++++|+++ +++.++|.++|+|++++|++|+++|+++.+||+++.++++...+...+.
T Consensus 157 l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~-- 234 (391)
T d1cl1a_ 157 MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY-- 234 (391)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH--
T ss_pred ccccccHHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceeccccccccchhhhh--
Confidence 999999999999976 49999999999 8888999999999999999999999999999999999888888877666
Q ss_pred hhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013210 277 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 354 (447)
Q Consensus 277 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~ 354 (447)
..|..+++..|++++++++++..|++++.+++..++++|++++. +|+||+++++|+|++++++++ |.|++++|
T Consensus 235 --~~G~~~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---g~gg~~sf 309 (391)
T d1cl1a_ 235 --LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT---GSSGLFSF 309 (391)
T ss_dssp --HTTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCCSEEEE
T ss_pred --cccccCCchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccC---CCCcceee
Confidence 78999999999999999999999999999999999999999987 899999999999999999987 68899999
Q ss_pred EeC---CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013210 355 DME---TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ 431 (447)
Q Consensus 355 ~l~---~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~ 431 (447)
.+. +.+.+.+|++.|+.. . +++|+|+.+|++++|+..++....++ ..+|+++++||||+| .|+++|+|++
T Consensus 310 ~l~~~~~~e~~~~f~d~L~l~---~-~a~SlG~~~SLi~~~~~~~~~~~~~~--~~~gi~~~liRlSVG-lEd~eDLi~D 382 (391)
T d1cl1a_ 310 VLKKKLNNEELANYLDNFSLF---S-MAYSWGGYESLILANQPEHIAAIRPQ--GEIDFSGTLIRLHIG-LEDVDDLIAD 382 (391)
T ss_dssp EESSCCCHHHHHHHHTTCSSC---B-CCSCCCSSSCEEEEECHHHHHHTSTT--CCCCCCSCEEEEECC-SSCHHHHHHH
T ss_pred eecCCCCHHHHHHHHHcCCcc---e-EeeCCCCCccceeCCcccccccCCch--HhcCCCcCEEEEEec-cCCHHHHHHH
Confidence 997 456678899999863 3 69999999999999987776655443 357999999999999 9999999999
Q ss_pred HHHHHHHh
Q 013210 432 FEKALSRM 439 (447)
Q Consensus 432 l~~al~~~ 439 (447)
|++||+++
T Consensus 383 l~~AL~~i 390 (391)
T d1cl1a_ 383 LDAGFARI 390 (391)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99999986
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.7e-62 Score=474.18 Aligned_cols=378 Identities=29% Similarity=0.435 Sum_probs=343.0
Q ss_pred CCCchhhHhhhcCCCCCCCCccccccccccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCe
Q 013210 37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA 116 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~ 116 (447)
+..+|.|+++|+....+.+|+++||||.||||.+++.+. +.+.|.|+|.+||+++.||++||+++|++.
T Consensus 4 ~~~~f~T~~vHag~~~d~~gav~pPI~~ssTf~~~~~~~-----------~~~~y~YsR~gnPT~~~lE~~la~LE~~~~ 72 (393)
T d1n8pa_ 4 ESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPAN-----------PIGTYEYSRSQNPNRENLERAVAALENAQY 72 (393)
T ss_dssp SSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSSS-----------BSSSCCBTTTCCHHHHHHHHHHHHHTTCSE
T ss_pred CCCCcchheEECCCCCCCCCCccCCcCCCCceecCCccc-----------ccCCeeeeCCCChHHHHHHHHHHHHhCCce
Confidence 345689999998766778899999999999999987521 245689999999999999999999999999
Q ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCC
Q 013210 117 AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS 196 (447)
Q Consensus 117 ~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~ 196 (447)
+++++||+.|+.+++ .++.+||+|+++...|++++..+...+++ .|+++.+++. +.+++++++ +++|++|++|+|.
T Consensus 73 a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~-~gi~~~~~~~-~~~~~~~~i-~~~t~lv~~Esps 148 (393)
T d1n8pa_ 73 GLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANA-HGVETSFTND-LLNDLPQLI-KENTKLVWIETPT 148 (393)
T ss_dssp EEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTT-TCSCCEEESS-HHHHHHHHS-CSSEEEEEECSSC
T ss_pred EEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhc-ccceeEEeec-chHHHHHHh-hhhcceeEecCcc
Confidence 999999999997554 67788999999999999999999989988 8999999884 568899999 8899999999999
Q ss_pred CCCccccCHHHHHHHHH----hcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHH
Q 013210 197 NPTLAVANIPELSRLAH----DKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMM 270 (447)
Q Consensus 197 NptG~v~~l~~I~~la~----~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~ 270 (447)
||+..+.|+++|+++|| ++|+++++|+++ +++.++|+++|+|++++|++|+++|+++.+||+++. ++++.++++
T Consensus 149 NP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~ 228 (393)
T d1n8pa_ 149 NPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQ 228 (393)
T ss_dssp TTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH
T ss_pred hhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHH
Confidence 99999999999999999 679999999999 788899999999999999999999999999999864 567778888
Q ss_pred HHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC-CC--eeeCCCCCCCchhHHHHHHhccCCC
Q 013210 271 DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GL--KVLYPGLEDHPHHELLKSMANKEYG 347 (447)
Q Consensus 271 ~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~--~v~~p~~~~~p~~~l~~~~~~~~~g 347 (447)
..+. ..|..+++..|++++++++++..|++++.+++..++++|+.+ +. +|+||+++++|+|+++++++... +
T Consensus 229 ~~~~----~~G~~~~p~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~-~ 303 (393)
T d1n8pa_ 229 FLQN----AIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDA-L 303 (393)
T ss_dssp HHHH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGG-C
T ss_pred HHHh----hcCCCCChHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccC-C
Confidence 7776 789999999999999999999999999999999999999876 53 89999999999999999988643 4
Q ss_pred cCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013210 348 FGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD 426 (447)
Q Consensus 348 ~g~~~~~~l~-~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~ 426 (447)
+|++++|.++ +.+.+.+|++.|+.. . +++|+|+.+|++++|+.++|..+++++++..|+++++||||+| .|+++
T Consensus 304 ~G~~~sf~l~~~~~~~~~f~~~l~l~---~-~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvG-lE~~~ 378 (393)
T d1n8pa_ 304 GGGMISFRIKGGAEAASKFASSTRLF---T-LAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG-IEDTD 378 (393)
T ss_dssp CCSEEEEEESSCHHHHHHHHHHCSSS---E-ECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC-SSCHH
T ss_pred CCceEEEEEeCCHHHHHHHHHhCCcc---e-ecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEec-cCCHH
Confidence 6899999997 667788999999973 3 6999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHh
Q 013210 427 QRWSQFEKALSRM 439 (447)
Q Consensus 427 ~~i~~l~~al~~~ 439 (447)
++|++|.+||++.
T Consensus 379 DLi~Dl~~AL~~a 391 (393)
T d1n8pa_ 379 DLLEDIKQALKQA 391 (393)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=100.00 E-value=1.6e-54 Score=414.83 Aligned_cols=325 Identities=33% Similarity=0.569 Sum_probs=302.2
Q ss_pred HHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhh
Q 013210 103 NLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAI 182 (447)
Q Consensus 103 ~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i 182 (447)
.||++||.++|++.++.++|||.|+..++++++++||+|+++...|++++..+...+++ .|+++++++..|++.+++++
T Consensus 2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~-~gi~~~~~d~~d~~~~~~~i 80 (331)
T d1pffa_ 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-FGVEVDFIDMAVPGNIEKHL 80 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHTC
T ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHh-cCeEEEEecccchhhHhhhc
Confidence 58999999999999999999999999999999999999999999999999999888887 89999999999999999999
Q ss_pred ccCCceEEEEEcCCCCCccccCHHHHHHHH-HhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEE
Q 013210 183 VQGRTKVLYFESISNPTLAVANIPELSRLA-HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC 260 (447)
Q Consensus 183 ~~~~t~lV~i~~~~NptG~v~~l~~I~~la-~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~ 260 (447)
+++|++|++|+|.||+..+.|++++.+++ +++|+++++|+++ +++.++|.++|+|++++|++|+++|+++.+||+++
T Consensus 81 -~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~ 159 (331)
T d1pffa_ 81 -KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVC 159 (331)
T ss_dssp -CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEE
T ss_pred -ccccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCcccccccc
Confidence 88999999999999999999999999885 6789999999999 67889999999999999999999999999999999
Q ss_pred cChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHH
Q 013210 261 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELL 338 (447)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~ 338 (447)
.+++.+...+.... ....|..+++..|++++++++++..|++++.+++..++++|++++. +|+||+++++|+|+++
T Consensus 160 ~~~~~~~~~~~~~~--~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~ 237 (331)
T d1pffa_ 160 SRADIIAKVKSQGI--KDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIA 237 (331)
T ss_dssp ECHHHHHHHHHTCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHH
T ss_pred ccccchhhhhhhhh--hhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHH
Confidence 98777655443211 1257999999999999999999999999999999999999999987 9999999999999999
Q ss_pred HHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEE
Q 013210 339 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS 418 (447)
Q Consensus 339 ~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS 418 (447)
++++. |+|++++|.+++.+.+.+|++.|+. |+ +++|+|+.+|++++|++++|..+++++++.+|+++++||||
T Consensus 238 ~~~~~---~~g~l~sf~l~~~~~~~~f~d~l~l---f~-~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRls 310 (331)
T d1pffa_ 238 KKQMK---MFGSMIAFDVDGLEKAKKVLDNCHV---VS-LAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLS 310 (331)
T ss_dssp HHHCS---SCCSEEEEECSSHHHHHHHHHTCSS---SE-ECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEE
T ss_pred hhccc---ccCcccceeeccHHHHHHHHHhCCc---ce-ecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEE
Confidence 99886 7899999999988889999999996 34 69999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHHHHh
Q 013210 419 VGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 419 ~g~~~~~~~~i~~l~~al~~~ 439 (447)
+| .|+++++|++|.+||+++
T Consensus 311 vG-lE~~~DLi~Dl~~AL~~i 330 (331)
T d1pffa_ 311 VG-CENVQDIIDDLKQALDLV 330 (331)
T ss_dssp CC-SSCHHHHHHHHHHHHHTC
T ss_pred ee-eCCHHHHHHHHHHHHHHh
Confidence 99 999999999999999875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-34 Score=282.91 Aligned_cols=342 Identities=17% Similarity=0.173 Sum_probs=244.4
Q ss_pred ccc---cccccccCCH-HHHHHhhc--CCCCCCCC-CccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHH
Q 013210 61 SIE---ASATFTVMEP-ETMRRMFA--GELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVL 131 (447)
Q Consensus 61 pi~---~att~~~~~~-~~~~~~~~--~~~~~~~~-~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al 131 (447)
||| +++|+..+.+ ++|.+++. ..|+||.+ .|..++.....++++|+++|+++|++ +++||+|+|++++.++
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~ 82 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAI 82 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHH
Confidence 677 7888888887 88888775 35688865 56777777788899999999999986 5999999999999988
Q ss_pred HHh----cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccc
Q 013210 132 MQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV 202 (447)
Q Consensus 132 ~~l----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v 202 (447)
.++ +++||+|++++++|+++...+. .+.. .|++++.++.+ |++++++++ +++|++|++++++|+||.+
T Consensus 83 ~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~-~~~~-~G~~v~~v~~~~~~~~d~~~~~~~i-~~~T~lv~is~~~n~tG~~ 159 (391)
T d1p3wa_ 83 KGAANFYQKKGKHIITSKTEHKAVLDTCR-QLER-EGFEVTYLAPQRNGIIDLKELEAAM-RDDTILVSIMHVNNEIGVV 159 (391)
T ss_dssp HHHHHHHGGGCCEEEEETTSCHHHHHHHH-HHHH-TTCEEEEECCCTTSCCCHHHHHHHC-CTTEEEEECCSBCTTTCCB
T ss_pred hhhhhhhcCCCCEEEEeccccchHHHHHH-HHHH-cCCEEEEeCCCCCCeEcHHHHHHhC-CCCcEEEEEECCCCCCeeE
Confidence 765 4789999999999999887774 3333 58999999865 799999999 8999999999999999999
Q ss_pred cCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh----
Q 013210 203 ANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA---- 276 (447)
Q Consensus 203 ~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~---- 276 (447)
.|+++|.++||++|+++++|++| +..+++...+++|+++.|++|++|++| + |+++.+++..........++
T Consensus 160 ~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g--~-g~~~~~~~~~~~~~~~~~gg~~~~ 236 (391)
T d1p3wa_ 160 QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG--I-GALYVRRKPRVRIEAQMHGGGHER 236 (391)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSS--C-EEEEECBTTBCCCCCSSCSSCTTT
T ss_pred CCHHHHHHHhccCCcEEEEeeccccCCccccchhccccccccccccccCCCc--e-EEEEEecchhcccCCcccCCcccc
Confidence 99999999999999999999999 445667778899999999999999887 3 77777665443332211110
Q ss_pred hhhcCCCccHH-HHHH-HHc-cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013210 277 LMLLGPTMNPK-VAFE-LSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 353 (447)
Q Consensus 277 ~~~~g~~~~~~-~a~~-~~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~ 353 (447)
....+....+. .+.. ... ..+......+++.+++.++.+.|..++........+. +...+++
T Consensus 237 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---------------~~~~~~~ 301 (391)
T d1p3wa_ 237 GMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH---------------GAPNILN 301 (391)
T ss_dssp TTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTT---------------SCTTEEE
T ss_pred CcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccc---------------cCceEEE
Confidence 01122222222 1111 111 1122334455666777777777777665333222111 2344888
Q ss_pred EEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCC----CeEEEEeCCCCCHHHHH
Q 013210 354 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA----GLVRMSVGYLGTLDQRW 429 (447)
Q Consensus 354 ~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~----~~iRiS~g~~~~~~~~i 429 (447)
|.++... ...+...|.. ++++.|. +|......+++.+.++|+++ +.||||+| ..+++++|
T Consensus 302 ~~~~~~~-~~~~~~~l~~------i~v~~G~--------~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~-~~nt~edi 365 (391)
T d1p3wa_ 302 VSFNYVE-GESLIMALKD------LAVSSGS--------ACTSASLEPSYVLRALGLNDELAHSSIRFSLG-RFTTEEEI 365 (391)
T ss_dssp EEETTSC-HHHHHHHTTT------EECBCCC--------C------CCCHHHHHHTCCHHHHHTEEEEECC-TTCCHHHH
T ss_pred EEeCCCC-hHHHHHHhCC------CEEEccc--------cccCCccchhHHHHHcCCCccccCCEEEEecC-CCCCHHHH
Confidence 8887544 4567777765 6788884 34433444567778888864 68999999 87777777
Q ss_pred HHHHHHHHHh
Q 013210 430 SQFEKALSRM 439 (447)
Q Consensus 430 ~~l~~al~~~ 439 (447)
+.+.++|+++
T Consensus 366 d~l~~~l~~~ 375 (391)
T d1p3wa_ 366 DYTIELVRKS 375 (391)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666554
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-33 Score=277.97 Aligned_cols=335 Identities=15% Similarity=0.171 Sum_probs=246.7
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCC-CCccccCCCCchHHHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHh----
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASGMSAISSVLMQL---- 134 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l---- 134 (447)
++++++.+.+ +.+.++++..++||. +.|..++.....++++|+.+|+++|+ +.++||+|+|+|++.++.++
T Consensus 29 a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~ 108 (405)
T d1jf9a_ 29 AASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN 108 (405)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccc
Confidence 4566655555 888888888888885 56888887778889999999999985 35999999999999988763
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHH
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 209 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~ 209 (447)
..+||+|+++..+|++....+..+..+ .|+++++++.+ |++.+++++ +++|++|++++++|.+|.++|+++|.
T Consensus 109 ~~~g~~il~~~~e~~s~~~~~~~~a~~-~g~~v~~~~~~~~g~~~~~~~~~~i-~~~t~lv~~~~v~~~tG~~~pi~~i~ 186 (405)
T d1jf9a_ 109 VRAGDNIIISQMEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPTLF-DEKTRLLAITHVSNVLGTENPLAEMI 186 (405)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHH-HTCEEEEECBCTTSCBCGGGHHHHC-CTTEEEEEEESBCTTTCCBCCHHHHH
T ss_pred cCCCCEEEEEeCcccchHHHHHHHHHH-cCcEEEEECCCCCCcCCHHHHHHhc-cCCcEEEEEecCCCcccccCchHHhh
Confidence 478999999999999998888666555 79999999865 788899988 89999999999999999999999999
Q ss_pred HHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh------------
Q 013210 210 RLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG------------ 275 (447)
Q Consensus 210 ~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~------------ 275 (447)
++||++|+++++|.+| +.+++++.++++|+++.|+|||+|++| + |+++.+++..+.+.....+
T Consensus 187 ~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G--~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (405)
T d1jf9a_ 187 TLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG--I-GILYVKEALLQEMPPWEGGGSMIATVSLSEG 263 (405)
T ss_dssp HHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSS--C-EEEEECHHHHTTCCCSSCSSSSEEECCTTTC
T ss_pred hHHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCC--c-eeeeechhhhcccCcccccccccCccccccc
Confidence 9999999999999999 446677788899999999999999887 4 8888888876544221100
Q ss_pred ------hhhhcCCCccHHHHHHHHccCCc-----HHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhc
Q 013210 276 ------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMAN 343 (447)
Q Consensus 276 ------~~~~~g~~~~~~~a~~~~~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~ 343 (447)
......++........+...++. .....++...+.+++.+.++..+. ....|.
T Consensus 264 ~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~--------------- 328 (405)
T d1jf9a_ 264 TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--------------- 328 (405)
T ss_dssp CEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT---------------
T ss_pred cccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCc---------------
Confidence 00011222332222222112221 223333445666667777777666 344332
Q ss_pred cCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013210 344 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 423 (447)
Q Consensus 344 ~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~ 423 (447)
..+++++|.+++.. ...+...|.. +| |.++.|..|+. .....++. ++.||||+| ..
T Consensus 329 ---~r~~ivsf~~~~~~-~~~~~~~L~~---~g-I~v~~G~~c~~--------------~~~~~~~~-~g~iRiS~~-~y 384 (405)
T d1jf9a_ 329 ---NRLGVIAFNLGKHH-AYDVGSFLDN---YG-IAVRTGHHCAM--------------PLMAYYNV-PAMCRASLA-MY 384 (405)
T ss_dssp ---TCCSEEEEEETTCC-HHHHHHHHHH---TT-EECEEECTTCH--------------HHHHHTTC-SCEEEEECC-TT
T ss_pred ---CcCcEEEEEcCCCC-HHHHHHHHHH---CC-cEEEccchhhh--------------hHHHhcCC-CCEEEEECC-CC
Confidence 24569999998433 3445555654 34 68888855432 22233444 589999999 99
Q ss_pred CHHHHHHHHHHHHHHhhhc
Q 013210 424 TLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 424 ~~~~~i~~l~~al~~~~~~ 442 (447)
+++++|+.|.++|+++.+.
T Consensus 385 nt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 385 NTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999988754
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=1.2e-31 Score=266.00 Aligned_cols=339 Identities=16% Similarity=0.150 Sum_probs=248.9
Q ss_pred cccccccCCH-HHHHHhhcCCCCCC-CCCccccCCCCchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHh----
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPD-RDFFIYSRHFNPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQL---- 134 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l---- 134 (447)
+++|++.+.+ +.+.+.++..++|| ++.|.+++.....++++|+.+|+++|++ .+++++++++++++++.++
T Consensus 29 a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~ 108 (408)
T d1t3ia_ 29 AATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNN 108 (408)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH
T ss_pred ccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccc
Confidence 5677765565 88888888889998 4578999888889999999999999984 3899999999999988762
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHH
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 209 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~ 209 (447)
.++|++|+++..+|++....+.....+ .|.++.+++.+ +.+.+++++ +++|++|++.+++|.+|.++|+++|.
T Consensus 109 ~~~g~~il~s~~e~~s~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~l~~~~-~~~t~lv~i~~~~~~tG~~~p~~~i~ 186 (408)
T d1t3ia_ 109 LKAGDEIITTVMEHHSNLVPWQMVAAK-TGAVLKFVQLDEQESFDLEHFKTLL-SEKTKLVTVVHISNTLGCVNPAEEIA 186 (408)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHH-HCCEEEEECBCTTSSBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCHHHHH
T ss_pred cCCCCEEEeecccchhhhhhhhhhhhc-cCceEeeeeccccccccHHHhhhcc-CCCceEEEEecccccccccCcHHHHh
Confidence 568999999999999998888655554 68888888754 789999998 88999999999999999999999999
Q ss_pred HHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh-----------
Q 013210 210 RLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----------- 276 (447)
Q Consensus 210 ~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----------- 276 (447)
++|+++|+++|+|.+| +.++++...+++|+++.|+||++|++| + |+++.+++....+.....++
T Consensus 187 ~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G--~-g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~ 263 (408)
T d1t3ia_ 187 QLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG--I-GFLYGKEEILEAMPPFFGGGEMIAEVFFDHF 263 (408)
T ss_dssp HHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHSCCCSCSTTSEEEECSSCE
T ss_pred hhhhccCceeeeccceecccccccccccCCceEEeccccccCCCC--c-cccccchhhhhcCCceecCCccccccccccc
Confidence 9999999999999999 666778888899999999999999887 3 88988888765442211100
Q ss_pred ------hhhcCCCccHHHHHHHHccCCc-----HHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhcc
Q 013210 277 ------LMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANK 344 (447)
Q Consensus 277 ------~~~~g~~~~~~~a~~~~~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~ 344 (447)
...-.++........+...++. .....++..++.+++.+.+.+.+. .+..|.....
T Consensus 264 ~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~------------ 331 (408)
T d1t3ia_ 264 TTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHG------------ 331 (408)
T ss_dssp EECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGS------------
T ss_pred ccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCcccc------------
Confidence 0011222222211111112221 223334556777888888888765 5554431111
Q ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013210 345 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 424 (447)
Q Consensus 345 ~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~ 424 (447)
..+++++|.+++.+ ...+...|... | +.++.|..|+- +.+++ ++. .+.||||++ ..+
T Consensus 332 --~~~~iv~f~~~~~~-~~~v~~~L~~~---g-I~v~~G~~c~~------------~~~~~--~~~-~g~vRiS~~-~yn 388 (408)
T d1t3ia_ 332 --DRAALASFNVAGLH-ASDVATMVDQD---G-IAIRSGHHCTQ------------PLHRL--FDA-SGSARASLY-FYN 388 (408)
T ss_dssp --CBCSEEEEEETTBC-HHHHHHHHHTT---T-EECBCSCTTCH------------HHHHH--TTC-CCCEEEECC-TTC
T ss_pred --CcceEEEEEeCCCC-HHHHHHHHhhC---C-cEEecCccccc------------HHHHh--hcC-CccEEEECC-CCC
Confidence 24669999998543 45566666653 4 68888854431 11221 232 478999999 999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 013210 425 LDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 425 ~~~~i~~l~~al~~~~~~ 442 (447)
++++|+.|.++|+++.+.
T Consensus 389 t~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 389 TKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987643
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.97 E-value=5.2e-31 Score=258.86 Aligned_cols=323 Identities=15% Similarity=0.171 Sum_probs=228.7
Q ss_pred ccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh-cCCCCe
Q 013210 65 SATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQL-CSSGGH 140 (447)
Q Consensus 65 att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l-~~~gd~ 140 (447)
++++....+ +++.+.++....++...+..++.....++++|+.+|+++|++ +++||+|+|+|+++++.++ .++||+
T Consensus 15 ~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~ 94 (381)
T d1elua_ 15 GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDE 94 (381)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCE
T ss_pred cccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhcCCce
Confidence 444443334 677776655444444344455555566788999999999974 4999999999999999987 578999
Q ss_pred EEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHH
Q 013210 141 VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH 213 (447)
Q Consensus 141 Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~ 213 (447)
|+++.++|+++...+.....+ .|+++.+++.+ +.+.+++++ +++|++|++++++|+||.+.|+++|.++|+
T Consensus 95 i~~~~~~~~s~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~l~~~i-~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~ 172 (381)
T d1elua_ 95 ILLTDCEHPGIIAIVQAIAAR-FGITYRFFPVAATLNQGDAAAVLANHL-GPKTRLVILSHLLWNTGQVLPLAEIMAVCR 172 (381)
T ss_dssp EEEETTCCHHHHHHHHHHHHH-HCCEEEEECCGGGSSSSCHHHHHHTTC-CTTEEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred EEEeccccceeeecccccccc-ccccccccccccccccchHHHHHHhhh-cccccccccccccccccccchhhHHHHHHh
Confidence 999999999988887555444 78999998864 256677777 789999999999999999999999999999
Q ss_pred hc----CCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh-----------
Q 013210 214 DK----GVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----------- 276 (447)
Q Consensus 214 ~~----gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----------- 276 (447)
++ ++++++|++| +..+++...+++|+++.|+||++++|.. + |+++.+++..+.+.....++
T Consensus 173 ~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G-~-g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 250 (381)
T d1elua_ 173 RHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAG-V-GGLYIHGDCLGEINPTYVGWRSITYGAKGEP 250 (381)
T ss_dssp HCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTT-C-EEEEECTTTGGGCCCCSCCTTTEEECTTSCE
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccch-h-hHHHhhHHHHHhcCccccccccccccccccc
Confidence 84 6999999999 4456677778999999999999987643 4 88888777665443211000
Q ss_pred -------hhhcCCCccHH---H---HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHh
Q 013210 277 -------LMLLGPTMNPK---V---AFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMA 342 (447)
Q Consensus 277 -------~~~~g~~~~~~---~---a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~ 342 (447)
.....+++... . |...+........+.++..++++++.+.|++++. ++..+..
T Consensus 251 ~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------- 317 (381)
T d1elua_ 251 TGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSA------------- 317 (381)
T ss_dssp EEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSC-------------
T ss_pred ccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCC-------------
Confidence 00111122211 1 1111222223345667788889999999999865 5543321
Q ss_pred ccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013210 343 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL 422 (447)
Q Consensus 343 ~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~ 422 (447)
..+++++|.+++....+.+.+.|+.. | +.++.- + .++.||||++ .
T Consensus 318 ----~~~~~vsf~~~~~~~~~~i~~~L~~~---g-i~v~~~-------------------------~-~~~~lRis~~-~ 362 (381)
T d1elua_ 318 ----PQAGLVSFTVDSPLGHRAIVQKLEEQ---R-IYLRTI-------------------------A-DPDCIRACCH-Y 362 (381)
T ss_dssp ----CSSSEEEEEECSSSCHHHHHHHHHHT---T-EECEEE-------------------------T-TTTEEEEECC-T
T ss_pred ----ccccEEEEEcCCCCCHHHHHHHHHhC---C-cEEEec-------------------------C-CCCEEEEecC-C
Confidence 13569999987554455666777652 3 333210 0 2478999999 8
Q ss_pred CCHHHHHHHHHHHHHHh
Q 013210 423 GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 423 ~~~~~~i~~l~~al~~~ 439 (447)
.++.++|+.|.++|+++
T Consensus 363 ~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 363 ITDEEEINHLLARLADF 379 (381)
T ss_dssp TCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998875
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.97 E-value=7.6e-30 Score=251.16 Aligned_cols=283 Identities=18% Similarity=0.219 Sum_probs=198.6
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.++|+.+|+.+ | .+++++|+|+++|+..++++++++||.|+++.|.|+++...+. ..|..+..++.+
T Consensus 70 ~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~~~~~v~~~~~ 144 (388)
T d1j32a_ 70 PRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK-----LAEGTPVILPTT 144 (388)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH-----HhcCeEEEEecc
Confidence 45666676654 3 2569999999999999999999999999999999999987773 245555555542
Q ss_pred -------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCccC------C--
Q 013210 174 -------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPAR------L-- 235 (447)
Q Consensus 174 -------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~~------~-- 235 (447)
|+++|++++ +++++++++++|+||||.+.+ +++|+++|+++|+++|+||+|..+.++... .
T Consensus 145 ~~~~~~~d~~~l~~~~-~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~ 223 (388)
T d1j32a_ 145 VETQFKVSPEQIRQAI-TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASP 223 (388)
T ss_dssp GGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred cccccCCCHHHHHHhC-CCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCc
Confidence 899999999 788999999999999999986 668888899999999999999666553211 1
Q ss_pred ---CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHHHHH
Q 013210 236 ---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRAL 311 (447)
Q Consensus 236 ---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~~ 311 (447)
+..+++.|+||.++.+|.|+ ||+++++++++.+....... ....+...+.++...+.. .+++.+..+.++++++
T Consensus 224 ~~~~~~i~~~S~SK~~~~~GlRv-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~ 301 (388)
T d1j32a_ 224 EAYERSVVCSGFAKTYAMTGWRV-GFLAGPVPLVKAATKIQGHS-TSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRR 301 (388)
T ss_dssp HHHHTEEEEEESTTTTTCTTTCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHH
T ss_pred ccccceeEecCChhhhhcchhHe-EEEEECHHHHHHHHHhhhhc-cccccHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 35799999999999999999 99999999998887665421 122222333333333333 3446667777889999
Q ss_pred HHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccc
Q 013210 312 IFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLM 389 (447)
Q Consensus 312 ~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~ 389 (447)
.+.+.|++++. .+..|. .|.++|+.++. ..+...+...|.. +.| +.+.-|..
T Consensus 302 ~~~~~l~~~~g~~~~~p~-------------------gg~~l~~~l~~~~~~~~~~~~~ll~--~~g-V~v~pG~~---- 355 (388)
T d1j32a_ 302 YMLDALNAMPGLECPKPD-------------------GAFYMFPSIAKTGRSSLDFCSELLD--QHQ-VATVPGAA---- 355 (388)
T ss_dssp HHHHHHHTCTTCBCCCCC-------------------BTTEECCBCGGGTCCHHHHHHHHHH--HHC-EECEEGGG----
T ss_pred HHHHHHHhCCCCEecCCC-------------------ceEEEEEECCCCCCCHHHHHHHHHH--hCC-EEEEeccc----
Confidence 99999988743 444332 56688888762 1223445555432 123 34444421
Q ss_pred cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHH
Q 013210 390 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSR 438 (447)
Q Consensus 390 ~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~ 438 (447)
.| .++++|||++ .. ++++.+++|.++|+.
T Consensus 356 ------------------F~-~~~~~Rls~~-~~~e~l~~al~rl~~~l~~ 386 (388)
T d1j32a_ 356 ------------------FG-ADDCIRLSYA-TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp ------------------GT-CTTBEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred ------------------cC-CCCeEEEEEe-CCHHHHHHHHHHHHHHHHH
Confidence 12 2478999999 52 223334455555443
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=5.7e-30 Score=250.96 Aligned_cols=339 Identities=15% Similarity=0.168 Sum_probs=235.6
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh----cC
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQL----CS 136 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l----~~ 136 (447)
++++++.+.+ +++.+++++.++||.+.|.+++.....++++|+++|+++|++ +++|++|+|++++.++.++ ..
T Consensus 8 a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~ 87 (376)
T d1eg5a_ 8 NATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEK 87 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred cccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccc
Confidence 4566666666 888999999999999888888888888899999999999985 4999999999999988643 45
Q ss_pred CCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHH
Q 013210 137 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL 211 (447)
Q Consensus 137 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~l 211 (447)
+|+.|+++...|+.+...++ ...+ .|+++++++.+ |++++++++ +++|++|++++++|+||.+.|++++.++
T Consensus 88 ~g~~v~~~~~~~~~~~~~~~-~~~~-~g~~v~~vp~~~~~~id~~~l~~~i-~~~t~lv~is~v~~~tG~~~~~~~i~~~ 164 (376)
T d1eg5a_ 88 RKRTIITTPIEHKAVLETMK-YLSM-KGFKVKYVPVDSRGVVKLEELEKLV-DEDTFLVSIMAANNEVGTIQPVEDVTRI 164 (376)
T ss_dssp TCCEEEECTTSCHHHHHHHH-HHHH-TTCEEEECCBCTTSCBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCHHHHHHH
T ss_pred cCcccccccccchhhHHHHH-HHHh-cCCEEEEEcCCCCCeECHHHHHHhc-CCCceEEEEECCccccceeeeehhhhhh
Confidence 67788888888887776663 4444 69999998764 799999999 8999999999999999999999999999
Q ss_pred HHhc--CCEEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhh----hhhhcCCC
Q 013210 212 AHDK--GVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG----ALMLLGPT 283 (447)
Q Consensus 212 a~~~--gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~----~~~~~g~~ 283 (447)
++.+ ++++++|++| +..+.+..++++|+++.|+|||+|++|. |+++.+++.. ++....+ .....|..
T Consensus 165 ~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~---~~l~~~~~~~--~~p~~~g~~~~~~~~~~~~ 239 (376)
T d1eg5a_ 165 VKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGV---GITYIRKGVP--IRPLIHGGGQERGLRSGTQ 239 (376)
T ss_dssp HHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTC---EEEEECTTSC--CCCSBCSSCTTTTTBCSCC
T ss_pred hhhcccCceeEEEeeeccccccccccccCccceecccceeecCCCc---eeEEeccCcc--cCCcccCCCCcccccCCcc
Confidence 8654 9999999998 5567778888999999999999998885 5555544321 1111110 00011111
Q ss_pred ccHHH--HHHHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH
Q 013210 284 MNPKV--AFELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 360 (447)
Q Consensus 284 ~~~~~--a~~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~ 360 (447)
..... +...... ................++.+.|......+..+.... ...++.+.+++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 303 (376)
T d1eg5a_ 240 NVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEIS----------------LPNTLSVSFPNIR 303 (376)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSB----------------CTTEEEEECTTCC
T ss_pred cchhhhhHHHHhhccccchhhhhhhhhhhhhhhcccccccccccccccccc----------------ccceeeeccCCCC
Confidence 11111 1111111 111222334455666777788877655444332211 2337888887543
Q ss_pred HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCC----CeEEEEeCCCCCHHHHHHHHHHHH
Q 013210 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA----GLVRMSVGYLGTLDQRWSQFEKAL 436 (447)
Q Consensus 361 ~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~----~~iRiS~g~~~~~~~~i~~l~~al 436 (447)
+..+...|.. +| +.++.|.. |.......++.+.++|++. +.||||++ ..+++++|+.+.++|
T Consensus 304 -~~~~~~~L~~---~g-I~vr~G~~--------c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~-~ynt~edid~l~~~L 369 (376)
T d1eg5a_ 304 -GSTLQNLLSG---YG-IYVSTSSA--------CTSKDERLRHVLDAMGVDRRIAQGAIRISLC-KYNTEEEVDYFLKKI 369 (376)
T ss_dssp -HHHHHHHHHH---TT-EECBC--------------------CHHHHTTCCHHHHHHEEEEECC-TTCCHHHHHHHHHHH
T ss_pred -HHHHHHHHhh---CC-eEEeCcch--------hcCCccchhHHHHHcCCCcccCCCEEEEecC-CCCCHHHHHHHHHHH
Confidence 4555556654 33 68888843 3333445556677788863 57999999 999999999999999
Q ss_pred HHhh
Q 013210 437 SRMQ 440 (447)
Q Consensus 437 ~~~~ 440 (447)
+++-
T Consensus 370 ~~iv 373 (376)
T d1eg5a_ 370 EEIL 373 (376)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=4.6e-29 Score=245.09 Aligned_cols=280 Identities=23% Similarity=0.277 Sum_probs=200.3
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.+||+.+++++ | .+++++|+|+++|+..++++++++||.|+++.|.|+++...+. ..|.++..++.+
T Consensus 71 ~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~-----~~g~~~~~v~~~ 145 (382)
T d1b5pa_ 71 PELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVR-----FAGGVVVEVETL 145 (382)
T ss_dssp HHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEECC
T ss_pred HHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHH-----HhcCeEEEEecc
Confidence 46778888775 2 3569999999999999999999999999999999999987773 257777766532
Q ss_pred -------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCccC-------CC
Q 013210 174 -------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPAR-------LG 236 (447)
Q Consensus 174 -------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~~-------~g 236 (447)
|++++++++ +++++++++++||||||.+.+ +++|+++|++||+++|+||+|..+.++... ..
T Consensus 146 ~~~~~~~d~~~l~~~~-~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 224 (382)
T d1b5pa_ 146 PEEGFVPDPERVRRAI-TPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE 224 (382)
T ss_dssp GGGTTCCCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTT
T ss_pred cccccCCCHHHHHHhC-CCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCC
Confidence 899999988 788999999999999999986 678899999999999999999776553211 14
Q ss_pred CeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC----cHHHHHHHHHHHHHH
Q 013210 237 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGLRMKEHCHRALI 312 (447)
Q Consensus 237 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~----~l~~~~~~~~~~~~~ 312 (447)
..+++.|+||.++.+|+|+ ||+++++++++.+...+... ....+...+..+...+.... .+....+.++++++.
T Consensus 225 ~~i~~~s~SK~~~~~GlR~-G~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (382)
T d1b5pa_ 225 HTLTVNGAAKAFAMTGWRI-GYACGPKEVIKAMASVSRQS-TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDL 302 (382)
T ss_dssp TEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecchhhccCcHhhe-EEEEECHHHHHHHHHHHHhc-ccCcccccccccccccccccchhHHHHHHHHHHHhhhhH
Confidence 6799999999999999999 99999999998887665521 11222222233333222211 123344556777888
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccc
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 391 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~ 391 (447)
+.+.+...+..+..|. .|.++|+.+.. ..+...+.+.|... | +.+.-|..
T Consensus 303 ~~~~l~~~g~~~~~p~-------------------gg~~~~~~~~~~~~~~~~~~~~l~e~---g-V~v~PG~~------ 353 (382)
T d1b5pa_ 303 LLEGLTALGLKAVRPS-------------------GAFYVLMDTSPIAPDEVRAAERLLEA---G-VAVVPGTD------ 353 (382)
T ss_dssp HHHHHHHHTCCBCCCS-------------------BTTEEEEECTTTCSSHHHHHHHHHHT---T-EECEESGG------
T ss_pred HHHHHhhcCCeEecCC-------------------ceEEEeEeCCCCCCCHHHHHHHHHHC---C-EEEEeCcc------
Confidence 8888888776655443 56689999852 12244555566542 3 45554521
Q ss_pred cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 392 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 392 ~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
.| .++.+|||++ .. ++ .+.++++++.+
T Consensus 354 ----------------F~-~~~~iRis~~-~~--~e---~l~~al~rl~~ 380 (382)
T d1b5pa_ 354 ----------------FA-AFGHVRLSYA-TS--EE---NLRKALERFAR 380 (382)
T ss_dssp ----------------GT-CTTEEEEECC-SC--HH---HHHHHHHHGGG
T ss_pred ----------------cC-CCCeEEEEEc-CC--HH---HHHHHHHHHHH
Confidence 11 2478999999 53 22 45666666654
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=3.9e-29 Score=246.01 Aligned_cols=285 Identities=16% Similarity=0.185 Sum_probs=199.5
Q ss_pred HHHHHHHHHHhC---------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALEG---------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~g---------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+||+.||++++ .+.+++|+|+++++..++++++.+||+|+++.|+|+.+...+. ..|.++..++.
T Consensus 65 ~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~~~~ 139 (388)
T d1gdea_ 65 LELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVI-----LAGGKPVEVPT 139 (388)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHH-----HHTCEEEEEEC
T ss_pred HHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHH-----HcCCEEEEeec
Confidence 567888887642 2459999999999999999999999999999999999987773 25777777664
Q ss_pred C-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------cC--
Q 013210 173 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------AR-- 234 (447)
Q Consensus 173 ~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~~-- 234 (447)
+ |+++|++++ +++++++++++||||||.+.+ +++|+++|++|++++|+||+|..+.+.. ..
T Consensus 140 ~~~~~~~~d~~~l~~~~-~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~ 218 (388)
T d1gdea_ 140 YEEDEFRLNVDELKKYV-TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLD 218 (388)
T ss_dssp CGGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred ccccCCCCCHHHHHHhC-ccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhcc
Confidence 2 899999999 788999999999999999986 6788899999999999999997664321 11
Q ss_pred --CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC---CcHHHHHHHHHHH
Q 013210 235 --LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKEHCHR 309 (447)
Q Consensus 235 --~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~~~~~~~~~ 309 (447)
.+..+++.|+||.+|.+|.|+ ||+++++++++.+....... ....+...+..+..++... +.+....+.+.++
T Consensus 219 ~~~~~~i~~~S~SK~~~~~GlR~-G~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 296 (388)
T d1gdea_ 219 GMFERTITVNGFSKTFAMTGWRL-GFVAAPSWIIERMVKFQMYN-ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRR 296 (388)
T ss_dssp TCGGGEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhccCccccE-EEEEeeccchhhhhhccccc-cccccccchhhHHHHHhhccchhHHHHHHHHHHHh
Confidence 146799999999999999999 99999999988887665521 1122222233333333321 2233445567788
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCcccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETL 388 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~ 388 (447)
+..+.+.|...+..+..|. .|.++|+.+++ ..+...+.+.|.. +.| +.+..|....
T Consensus 297 ~~~~~~~l~~~~~~~~~p~-------------------gg~fl~~~l~~~~~~~~~~~~~ll~--e~g-V~v~PG~~F~- 353 (388)
T d1gdea_ 297 RKLVWKRLNEMGLPTVKPK-------------------GAFYIFPRIRDTGLTSKKFSELMLK--EAR-VAVVPGSAFG- 353 (388)
T ss_dssp HHHHHHHHHHTTCCCCCCC-------------------BTTEECCBCGGGTCCHHHHHHHHHH--HTC-EECEEGGGGC-
T ss_pred hhhhhhhhhhccccccCCC-------------------ceEEEEEECCCCCCCHHHHHHHHHH--hCC-EEEEechhhC-
Confidence 8888888888766544332 46688888863 2234556555432 123 3444442110
Q ss_pred ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHH
Q 013210 389 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSR 438 (447)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~ 438 (447)
. ..++++|||+| .. ++++.+++|.++|++
T Consensus 354 -------~-------------~~~~~iRis~~-~~~e~l~~al~rL~~~l~e 384 (388)
T d1gdea_ 354 -------K-------------AGEGYVRISYA-TAYEKLEEAMDRMERVLKE 384 (388)
T ss_dssp -------G-------------GGTTBEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred -------C-------------CCCCEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 0 02578999999 52 233344555555544
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=9.5e-28 Score=234.36 Aligned_cols=240 Identities=19% Similarity=0.221 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC------
Q 013210 101 VLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------ 172 (447)
Q Consensus 101 ~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~------ 172 (447)
..+||+.||+.++.+ ++++|+|+++++..++.+++.+||.|+++.|+|+.+...+.. .|..+..++.
T Consensus 63 ~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~-----~g~~~~~~~~~~~~~~ 137 (368)
T d1v2da_ 63 LPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFL-----AGAKARLVRLDLTPEG 137 (368)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-----TTCEEEEEECEEETTE
T ss_pred CHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHh-----cCCccceecccccccc
Confidence 468999999999864 599999999999999999999999999999999999887732 3444444332
Q ss_pred --CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-------CCCCeEE
Q 013210 173 --SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-------RLGADVV 240 (447)
Q Consensus 173 --~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-------~~g~di~ 240 (447)
.|++.+++++ +++++++++++||||||.+.+ +++|+++|++||+++|+|++|..+..... .....++
T Consensus 138 ~~~d~~~l~~~~-~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (368)
T d1v2da_ 138 FRLDLSALEKAL-TPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFT 216 (368)
T ss_dssp EECCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEE
T ss_pred ccCCHHHHHHhh-ccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccce
Confidence 2899999999 788999999999999999997 77889999999999999999854433221 1246788
Q ss_pred EeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHH---ccCCcHHHHHHHHHHHHHHHHHHH
Q 013210 241 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS---ERIPHLGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 241 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~---~~~~~l~~~~~~~~~~~~~l~~~L 317 (447)
+.|+||.++.+|.|+ ||++.++++++.+...+... ........+..+..++ ...+++....+.++++++++.+.|
T Consensus 217 ~~~~sk~~~~~G~R~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l 294 (368)
T d1v2da_ 217 VGSAGKRLEATGYRV-GWIVGPKEFMPRLAGMRQWT-SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGL 294 (368)
T ss_dssp EEEHHHHTTCGGGCC-EEEECCTTTHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccccccccccc-ccccccccccchhhhhhhcc-ccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhH
Confidence 899999999999999 99999999998887766521 1222223333333322 223445566667899999999999
Q ss_pred HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013210 318 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY 368 (447)
Q Consensus 318 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~ 368 (447)
++++.++..|. .|.++++.+++.+ +.+++++
T Consensus 295 ~~~g~~~~~p~-------------------g~~~~~~~l~~~~-~~~ll~~ 325 (368)
T d1v2da_ 295 RAMGLRVYVPE-------------------GTYFLMAELPGWD-AFRLVEE 325 (368)
T ss_dssp HHTTCCEECCS-------------------BSSEEEEECTTCC-HHHHHHH
T ss_pred HhcCcEEecCC-------------------ceeEEEEeCCccH-HHHHHHh
Confidence 99988776553 4668999998543 4445443
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.96 E-value=1.7e-27 Score=234.65 Aligned_cols=285 Identities=12% Similarity=0.107 Sum_probs=190.8
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC-
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI- 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~- 172 (447)
.+||+.+|+++ | .+++++|+|+++|+.+++++++++||+|++..|.|.++...+. ..|.....++.
T Consensus 69 ~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~-----~~g~~~v~~~~~ 143 (394)
T d1c7na_ 69 EEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-----NQERKIIECELL 143 (394)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----TTTCEEEECCCE
T ss_pred HHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccccccccccccCcccchhhHHh-----hhhhcccccccc
Confidence 46788888775 3 3569999999999999999999999999999999999887773 24555554443
Q ss_pred -------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCccC--------
Q 013210 173 -------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPAR-------- 234 (447)
Q Consensus 173 -------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~~-------- 234 (447)
.|.+.++.++..++++++++++||||||.+.+ +++|+++|+++++++|+||+|..+.++...
T Consensus 144 ~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~ 223 (394)
T d1c7na_ 144 EKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSID 223 (394)
T ss_dssp EETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred cccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhh
Confidence 27788887775678999999999999999986 667889999999999999999776543211
Q ss_pred ---CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccH-H-HHH-HHHccC-CcHHHHHHHHH
Q 013210 235 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP-K-VAF-ELSERI-PHLGLRMKEHC 307 (447)
Q Consensus 235 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~-~-~a~-~~~~~~-~~l~~~~~~~~ 307 (447)
....+++.|+||.++.+|.|+|++++.++.+.+.+...... ..+..... . .+. ...... +...+..+.+.
T Consensus 224 ~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (394)
T d1c7na_ 224 EQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDA---TSGMPFTTLGYKACEICYKECGKWLDGCIKVID 300 (394)
T ss_dssp HHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH---TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccccChhhhhhhhhhhhh---ccccccccccchhhhhhhcchhhhhcccccccc
Confidence 14679999999999999999944444556666666655542 22222222 2 222 222222 23444555567
Q ss_pred HHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccC
Q 013210 308 HRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 308 ~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
++++.+.+.++..+. .+..| ..|.++++.++. ..+...|.+.|.. +.| +.+.-|.
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~p-------------------~g~~~~~~~~~~~~~~~~~~~~~Ll~--~~g-V~v~pG~ 358 (394)
T d1c7na_ 301 KNQRIVKDFFEVNHPEIKAPLI-------------------EGTYLQWIDFRALKMDHKAMEEFMIH--KAQ-IFFDEGY 358 (394)
T ss_dssp HHHHHHHHHHHHHCTTSBCCCC-------------------SBSSEEEEECGGGCCCHHHHHHHHHH--TTC-CCCEEGG
T ss_pred hhhhhhhhhhhccccceeecCC-------------------CceeEEEEECCCCCCCHHHHHHHHHH--hCC-EEEEcch
Confidence 777778888776433 32222 145688888863 1224556665533 123 4544442
Q ss_pred ccccccccccccCCCCCHHHHHhcCC-CCCeEEEEeCCCC--CHHHHHHHHHHHHHHh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGI-SAGLVRMSVGYLG--TLDQRWSQFEKALSRM 439 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~-~~~~iRiS~g~~~--~~~~~i~~l~~al~~~ 439 (447)
.. |. .++++|||++ .. ++++.+++|.++|+++
T Consensus 359 ~F----------------------g~~~~~~iRis~~-~~~e~i~eal~rl~~~l~~L 393 (394)
T d1c7na_ 359 IF----------------------GDGGIGFERINLA-APSSVIQESLERLNKALKDL 393 (394)
T ss_dssp GG----------------------CGGGTTEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred hh----------------------CCCCCCEEEEEEe-CCHHHHHHHHHHHHHHHHhc
Confidence 21 11 2578999999 52 2445556666666655
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=1e-26 Score=227.56 Aligned_cols=228 Identities=18% Similarity=0.197 Sum_probs=171.7
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.++|+.+++++ + .+.+++|+|+++|+..++++++++||.|+++.|.|+.+...+.. .+.....++.+
T Consensus 68 ~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~-----~~~~~~~~~~~ 142 (375)
T d1o4sa_ 68 YELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIIL-----AGGTVNVVETF 142 (375)
T ss_dssp HHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-----TTCEEEEEECC
T ss_pred HHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhc-----ccccccccccc
Confidence 46777777764 2 35699999999999999999999999999999999998877632 34444443332
Q ss_pred -------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---------cC
Q 013210 174 -------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---------AR 234 (447)
Q Consensus 174 -------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---------~~ 234 (447)
+.+.++... .++++++++++|+||||.+.+ +++|+++|++|+++||+||+|..+.++. ..
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 221 (375)
T d1o4sa_ 143 MSKNFQPSLEEVEGLL-VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEG 221 (375)
T ss_dssp GGGTTCCCHHHHHHTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSS
T ss_pred ccccccchhHHHHHhh-ccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCC
Confidence 778888777 788999999999999999986 6688899999999999999986654431 22
Q ss_pred CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 013210 235 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFA 314 (447)
Q Consensus 235 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~ 314 (447)
.+..+++.|+||.++.+|.|+ ||++++++.++.+...+.. .........................+.+.++++.+.
T Consensus 222 ~~~~i~~~S~SK~~~l~G~R~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 297 (375)
T d1o4sa_ 222 FDRIVYINGFSKSHSMTGWRV-GYLISSEKVATAVSKIQSH---TTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVV 297 (375)
T ss_dssp STTEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHH---HTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeechhhccCCcccc-ccccccccchhhhhhhhcc---ccccccccchhhhhhhcccchhhhHHHHHHHHHHHH
Confidence 367899999999999999999 9999999998887766552 122222222222222222344455667888899999
Q ss_pred HHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013210 315 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 358 (447)
Q Consensus 315 ~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~ 358 (447)
+.|++.+.++..|. .|.++|+.++.
T Consensus 298 ~~l~~~g~~~~~p~-------------------gg~f~~~~~~~ 322 (375)
T d1o4sa_ 298 ERLKKMGVKFVEPE-------------------GAFYLFFKVRG 322 (375)
T ss_dssp HHHHHTTCCCCCCS-------------------BSSEEEEECSS
T ss_pred HHHHhcCceEecCC-------------------ccEEEEEECCC
Confidence 99999887665443 46689999975
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.95 E-value=6.1e-27 Score=232.51 Aligned_cols=229 Identities=17% Similarity=0.208 Sum_probs=173.4
Q ss_pred HHHHHHHHHHh----C-----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G-----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g-----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+||+.||+++ | .+++++|+|+++|+..++++++.+||.|+++.|.|+.+...+. ..|.+++.++.
T Consensus 69 ~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~ 143 (418)
T d2r5ea1 69 PRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVK-----AAGGIPRFIPL 143 (418)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHH-----HcCCeEEEEEe
Confidence 45666666654 3 2469999999999999999999999999999999999988773 24656655543
Q ss_pred C---------------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-
Q 013210 173 S---------------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA- 233 (447)
Q Consensus 173 ~---------------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~- 233 (447)
+ +++++.... ..+++++++++||||||.+.+ +++|+++|++||+++|+|++|..+.+++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~ 222 (418)
T d2r5ea1 144 KPNKTGGTISSADWVLDNNELEALF-NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE 222 (418)
T ss_dssp EESCCSSCEEGGGEECCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred cccccccchhhhhhhhhHHHHhhhh-hccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCc
Confidence 1 678888877 788999999999999999986 56788999999999999999966654321
Q ss_pred -----C----CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc-------c-C
Q 013210 234 -----R----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-------R-I 296 (447)
Q Consensus 234 -----~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-------~-~ 296 (447)
. ....+++.|+||.++.+|.|+ ||+++++++++.+....... ....+++.+.++...+. . .
T Consensus 223 ~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRi-G~~~~~~~~i~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~ 300 (418)
T d2r5ea1 223 HIRICTLPGMWERTITIGSAGKTFSLTGWKI-GWAYGPEALLKNLQMVHQNC-VYTCATPIQEAIAVGFETELKRLKSPE 300 (418)
T ss_dssp CCCGGGSTTTGGGEEEEEEHHHHTTCGGGCC-EEEESCHHHHHHHHHHHTTT-TCSCCHHHHHHHHHHHHHHHTTTTSTT
T ss_pred cccccccccccceeeeeecCCccccCCCccc-ccccccchhhhhhhhccccc-ccccccchhhhccccccccccccccch
Confidence 1 246789999999999999999 99999999998887765521 12222233333322221 1 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 297 PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 297 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+++....+.++.+++.+.+.|++.+..+..|. .|.++|+.+.
T Consensus 301 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~-------------------gg~f~~~~~~ 342 (418)
T d2r5ea1 301 CYFNSISGELMAKRDYMASFLAEVGMNPTVPQ-------------------GGYFMVADWS 342 (418)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTCEEEECS-------------------BSSEEEEECG
T ss_pred hhHHHHHHHHHHhhhhHHhhHhhcCCcccCCC-------------------ceeEEEEEcc
Confidence 33556667789999999999999988777664 5668888874
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.95 E-value=1.2e-26 Score=228.64 Aligned_cols=230 Identities=17% Similarity=0.156 Sum_probs=168.9
Q ss_pred HHHHHHHHHHh----CC----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAALE----GT----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l~----g~----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.+|++.||+.+ |. +++++|+|+++++.+++.+++.+||.|++++|+|+.+...+. ..|.++..++..
T Consensus 73 ~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~-----~~g~~~v~v~~~ 147 (395)
T d1xi9a_ 73 PELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVK-----FYGGKPVEYRTI 147 (395)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEEE
T ss_pred HHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhh-----hcCCEEEEEecc
Confidence 45666666664 43 569999999999999999999999999999999999887773 256666655422
Q ss_pred -------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc--------CC
Q 013210 174 -------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA--------RL 235 (447)
Q Consensus 174 -------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~--------~~ 235 (447)
|++++++.+ .+++++|++++||||||.+.+ +++|+++|++|+++++.|++|..+.++.. ..
T Consensus 148 ~~~~~~~d~~~~~~~~-~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 226 (395)
T d1xi9a_ 148 EEEDWQPDIDDIRKKI-TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKD 226 (395)
T ss_dssp GGGTSEECHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSS
T ss_pred ccccccchHHHHHHhh-cccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCC
Confidence 889999988 789999999999999999986 67889999999999999999966654321 22
Q ss_pred CCeEEEeCCCccccCCCCeeEEEEEc--ChHHHHHHHHHhhh--hhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHHHH
Q 013210 236 GADVVVHSISKFISGGADIIAGAVCG--PANLVNSMMDLHQG--ALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRA 310 (447)
Q Consensus 236 g~di~~~S~sK~~g~~g~~igG~l~~--~~~~~~~l~~~~~~--~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~ 310 (447)
...+++.|+||.++.+|+|+ ||++. +...+..+...... ......+.+.+.++...+.. .+++.+..+.+++++
T Consensus 227 ~~vi~~~S~SK~~~~~GlRv-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 305 (395)
T d1xi9a_ 227 VPVIVMNGLSKVYFATGWRL-GYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERR 305 (395)
T ss_dssp SCEEEEEESTTTTCCGGGCC-EEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcchhcccchhhc-EeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 46799999999999999999 87653 33333333322110 11122334444444444443 345667777889999
Q ss_pred HHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 311 LIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 311 ~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+.+.+.|++.+. .+..|. .|.++|+.++
T Consensus 306 ~~l~~~L~~~~~~~~~~p~-------------------gg~~~~~~l~ 334 (395)
T d1xi9a_ 306 DYIYKRLNEIPGISTTKPQ-------------------GAFYIFPKIE 334 (395)
T ss_dssp HHHHHHHHTSTTEECCCCC-------------------BSSEECCEEC
T ss_pred HHHHHHHHhCCCceecCCC-------------------eeEEEeEECC
Confidence 999999998865 333332 4668888886
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=2.4e-27 Score=230.59 Aligned_cols=221 Identities=19% Similarity=0.256 Sum_probs=163.9
Q ss_pred chHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----
Q 013210 99 PTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----- 173 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~----- 173 (447)
+..+.+|+.+|+++|++++++|+||++|+.+++.+++++||+|+++.++|++.+..+. ..|.++.+++.+
T Consensus 47 ~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~-----~~g~~v~~v~~~~~~~~ 121 (364)
T d2e7ja1 47 PIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE-----RAGLNIALVPKTDYPDY 121 (364)
T ss_dssp CHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----HTTCEEEEECCCCTTTC
T ss_pred HHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHH-----hccceEEEeeecccccc
Confidence 4568899999999999999999999999999999999999999999999998887763 268888888764
Q ss_pred --CHHHHHHhhc----cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCC
Q 013210 174 --DHEMVNSAIV----QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSIS 245 (447)
Q Consensus 174 --d~~~l~~~i~----~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~s 245 (447)
|+++++++++ ..++++|++++|+||+|.+.|+++|+++|++||+++|+|++| +.++.+..++++|++++|+|
T Consensus 122 ~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~ 201 (364)
T d2e7ja1 122 AITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGH 201 (364)
T ss_dssp CCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHH
T ss_pred ccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeeeccc
Confidence 7889988882 234679999999999999999999999999999999999999 33455666779999999999
Q ss_pred ccccCCCCeeEEEEEcChHHHHHHHHHhhh----hhhhcCCCccHHHHHHHHccCCcHH---HHHHHHHHHHHHHHHHHH
Q 013210 246 KFISGGADIIAGAVCGPANLVNSMMDLHQG----ALMLLGPTMNPKVAFELSERIPHLG---LRMKEHCHRALIFARRMK 318 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~----~~~~~g~~~~~~~a~~~~~~~~~l~---~~~~~~~~~~~~l~~~L~ 318 (447)
|+++++|. + |+++.++++++.+...... .....+..............++... ++..+..++++++.+.|+
T Consensus 202 K~~~~~g~-~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (364)
T d2e7ja1 202 KSMAASGP-I-GVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEME 279 (364)
T ss_dssp HHSSCCSS-C-EEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred cccCCCCC-E-EEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998874 4 9999988776654321110 0001111111111111111112211 123334466778888898
Q ss_pred hCCCeeeC
Q 013210 319 KLGLKVLY 326 (447)
Q Consensus 319 ~~~~~v~~ 326 (447)
+.+..+..
T Consensus 280 ~~g~~~~~ 287 (364)
T d2e7ja1 280 KLGIKQLG 287 (364)
T ss_dssp HTTCEEES
T ss_pred HcCCeecC
Confidence 88876554
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.1e-26 Score=230.78 Aligned_cols=229 Identities=21% Similarity=0.272 Sum_probs=172.2
Q ss_pred HHHHHHHHHHh----CC-----CeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----GT-----EAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g~-----~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+||+.||+++ |. ++|++|+|+++|+.+++++++.+|+.|+++.|.|+.+...+.. .|.+++.++.
T Consensus 67 ~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~-----~g~~~v~~~~ 141 (418)
T d1w7la_ 67 PPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMM-----AGGRPVFVSL 141 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHH-----cCCEeecccc
Confidence 45666666664 43 2499999999999999999999999999999999999877732 3444443321
Q ss_pred -----------------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013210 173 -----------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP 232 (447)
Q Consensus 173 -----------------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~ 232 (447)
.|.+++.... +++++++++++||||||.+.+ +++|+++|+++++++|+|++|..+.++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~ 220 (418)
T d1w7la_ 142 KPGPIQNGELGSSSNWQLDPMELAGKF-TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG 220 (418)
T ss_dssp EECC---CCSEEGGGEECCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred ccccccccccccccCcccchhhhhccc-cccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCC
Confidence 1566777766 788999999999999999985 6688899999999999999997665431
Q ss_pred ------cCC----CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-------
Q 013210 233 ------ARL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER------- 295 (447)
Q Consensus 233 ------~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~------- 295 (447)
..+ ...+++.|+||.++.+|.|+ ||++++++++..+...+... ....++..+.++..++..
T Consensus 221 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~Rv-G~~v~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~ 298 (418)
T d1w7la_ 221 HQHISIASLPGMWERTLTIGSAGKTFSATGWKV-GWVLGPDHIMKHLRTVHQNS-VFHCPTQSQAAVAESFEREQLLFRQ 298 (418)
T ss_dssp CCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCC-EEEECCHHHHHHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHccccccccceecccCccccCCCCcc-cccccchhhhhhhccccccc-cccccchhhHHHHHHhhhccccccc
Confidence 111 36899999999999999999 99999999999888776521 122233333333333221
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 296 -IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 296 -~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
.+++....+.+.++++.+.+.|++.++++..|. .|.++|+.++
T Consensus 299 ~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~-------------------gg~f~~~~~~ 342 (418)
T d1w7la_ 299 PSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQ-------------------GSYFLITDIS 342 (418)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS-------------------BSSEEEEECH
T ss_pred cccccccchhhhhhhhhhhhhhhhhcCCcccCCC-------------------ceeEEEEECc
Confidence 234555667789999999999999888776554 5678898874
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=5.2e-26 Score=220.77 Aligned_cols=281 Identities=15% Similarity=0.175 Sum_probs=197.8
Q ss_pred CCCCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcCCCC-eEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 95 RHFNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLCSSGG-HVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~~~gd-~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
|+.++...+|++.||+++|. ++|++|+|+++++.+++++++.+|| .|+++.|.|..+...+. ..|.++..++
T Consensus 52 rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~-----~~g~~v~~~~ 126 (354)
T d1fg7a_ 52 RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVECRTVP 126 (354)
T ss_dssp SCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH-----HHTCEEEECC
T ss_pred cCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhhhh-----ccCceeeccc
Confidence 44555557899999999986 4699999999999999999999998 58889999998887763 2577777776
Q ss_pred CC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHH--HhcCCEEEEeCCCCCCCCC------ccCCCCe
Q 013210 172 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA--HDKGVTVVVDNTFSPLVLS------PARLGAD 238 (447)
Q Consensus 172 ~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la--~~~gi~livD~~~~~~~~~------~~~~g~d 238 (447)
.+ |+++++..+ .++++|++++||||||.+.+.+++..++ .+++.++++|++|..+..+ .......
T Consensus 127 ~~~~~~~d~~~l~~~~--~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~ 204 (354)
T d1fg7a_ 127 TLDNWQLDLQGISDKL--DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHL 204 (354)
T ss_dssp CCTTSCCCHHHHHTSC--TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTE
T ss_pred cccccccchhhhhhcc--cccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhcccccc
Confidence 44 788888766 4799999999999999999755443333 3468888999988544321 1223567
Q ss_pred EEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHH
Q 013210 239 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARR 316 (447)
Q Consensus 239 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~ 316 (447)
+++.|+||.||.+|.|+ ||+++++++++.+.+.+.. ...+.+.+..+..++.. ......+.+++.+.++.+.+.
T Consensus 205 iv~~S~SK~~~laGlRi-Gy~i~~~~~i~~l~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 280 (354)
T d1fg7a_ 205 AILRTLSKAFALAGLRC-GFTLANEEVINLLMKVIAP---YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA 280 (354)
T ss_dssp EEEEESSSTTCCGGGCC-EEEEECHHHHHHHHHHSCS---SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeCCccccCCCcccc-ccccccchhhhhhhhhcCc---cchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHH
Confidence 88999999999999999 9999999999998876551 12222222222222211 122445566778888999999
Q ss_pred HHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccc
Q 013210 317 MKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 395 (447)
Q Consensus 317 L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~ 395 (447)
|.+.+. ...+|. .|.++++.+++. ..+.+.|... | +.+.-++..
T Consensus 281 l~~~~~~~~~~p~-------------------~~~f~~~~~~~~---~~~~~~L~~~---g-Ilvr~~~~~--------- 325 (354)
T d1fg7a_ 281 LKEIPCVEQVFDS-------------------ETNYILARFKAS---SAVFKSLWDQ---G-IILRDQNKQ--------- 325 (354)
T ss_dssp HHHSTTEEEECCC-------------------SSSEEEEEETTH---HHHHHHHHHT---T-EECEECTTS---------
T ss_pred HHhCCCcceeCCC-------------------CceEEEEeCCCH---HHHHHHHHHC---C-cEEecCCCC---------
Confidence 999876 344443 456899999854 4566666652 3 333322110
Q ss_pred cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 396 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 396 ~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+. ++++|||+| . .+..+.|.++|++
T Consensus 326 ------------~~~-~~~lRisig-t---~ee~~~~l~aLka 351 (354)
T d1fg7a_ 326 ------------PSL-SGCLRITVG-T---REESQRVIDALRA 351 (354)
T ss_dssp ------------TTC-TTEEEEECC-C---HHHHHHHHHHHHT
T ss_pred ------------CCC-CCEEEEEeC-C---HHHHHHHHHHHhh
Confidence 022 479999999 3 2345666666653
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.95 E-value=8.5e-26 Score=223.79 Aligned_cols=227 Identities=15% Similarity=0.179 Sum_probs=165.4
Q ss_pred HHHHHHHHHHh--------------CCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeE
Q 013210 102 LNLSRQMAALE--------------GTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT 167 (447)
Q Consensus 102 ~~l~~~ia~l~--------------g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~ 167 (447)
.+||+.||+++ ..+++++|+|+++|+..++++++++||+|++++|+|+.+...+. ..|.++
T Consensus 75 ~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-----~~G~~~ 149 (412)
T d1bw0a_ 75 PEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCK-----AYGIGM 149 (412)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEE
T ss_pred HHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhh-----ccCccc
Confidence 46777777764 13579999999999999999999999999999999999887773 367777
Q ss_pred EEeCCC-------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc----
Q 013210 168 TFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA---- 233 (447)
Q Consensus 168 ~~v~~~-------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~---- 233 (447)
..++.+ +++++++++ +++++++++++|+||||.+.+ +++|+++|++|++++|+||+|..+.++..
T Consensus 150 ~~v~~~~~~~~~~~~~~l~~~~-~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~ 228 (412)
T d1bw0a_ 150 HFYNCRPENDWEADLDEIRRLK-DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNA 228 (412)
T ss_dssp EEEEEEGGGTTEECHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTC
T ss_pred cccccccccccchhhHHHHhhh-hccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCcc
Confidence 776642 788999888 788999999999999999986 67888889999999999999976654321
Q ss_pred ---------CCCCeEEEeCCCccccCCCCeeEEEEEcCh------HHHHHHHHHhhhhhhhcCCCccHH-HHHHHH-ccC
Q 013210 234 ---------RLGADVVVHSISKFISGGADIIAGAVCGPA------NLVNSMMDLHQGALMLLGPTMNPK-VAFELS-ERI 296 (447)
Q Consensus 234 ---------~~g~di~~~S~sK~~g~~g~~igG~l~~~~------~~~~~l~~~~~~~~~~~g~~~~~~-~a~~~~-~~~ 296 (447)
.....+++.|+||.++.+|+|+ ||+++++ .++........ ...++....+ .+...+ ...
T Consensus 229 ~~~~~~~~~~~~~~~~~~s~SK~~~~~G~Rv-G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 304 (412)
T d1bw0a_ 229 TFTSVADFETTVPRVILGGTAKNLVVPGWRL-GWLLYVDPHGNGPSFLEGLKRVGM---LVCGPCTVVQAALGEALLNTP 304 (412)
T ss_dssp CCCCTTSSCCSCCEEEEEESTTTTSCGGGCC-EEEEEECTTCSCHHHHHHHHHHHH---HHTCSCHHHHHHHHHHHHSSC
T ss_pred ccccccccccccccccccccCccCccCCCCc-ccccccchhhcchhhhhhhccccc---cccCCchhhhhhccccccccc
Confidence 1124578889999999999999 8887653 23333332222 1233332222 222222 222
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 297 -PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 297 -~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
+++....+++.++++.+.+.|.+. +..+..|. .|.++++.++
T Consensus 305 ~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~-------------------gg~~l~~~~~ 348 (412)
T d1bw0a_ 305 QEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR-------------------GAMYLMSRID 348 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC-------------------BTTEEEEEEC
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCceecCCC-------------------CceEEEEeCC
Confidence 345566777899999999999775 33554443 5668888876
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=7.2e-26 Score=220.30 Aligned_cols=293 Identities=19% Similarity=0.118 Sum_probs=192.0
Q ss_pred ccccCCCCchHHHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcc
Q 013210 91 FIYSRHFNPTVLNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRA 162 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~ 162 (447)
+.|+.... .++++.||+++ | .+.+++|+|+++++..++.+++++||+|+++.|.|+.+...+..
T Consensus 30 ~~Y~~~~g---~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~----- 101 (361)
T d1d2fa_ 30 FGYSRWKN---DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEG----- 101 (361)
T ss_dssp CCCCCSCC---HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHH-----
T ss_pred CCCCCCCC---HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccccccccccccccccchhHHHHh-----
Confidence 44554333 24666666654 4 35699999999999999999999999999999999999887732
Q ss_pred cCeeEEEeCC--------CCHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013210 163 CNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS 231 (447)
Q Consensus 163 ~g~~~~~v~~--------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~ 231 (447)
.|..+..++. .|++.+++.+.++++++|++++||||||.+.+ +++|+++|+++|+++|+|++|..+.++
T Consensus 102 ~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~ 181 (361)
T d1d2fa_ 102 NQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG 181 (361)
T ss_dssp TTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCS
T ss_pred hcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccc
Confidence 4555444432 28999999886778999999999999999986 779999999999999999999766442
Q ss_pred c--------cCCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHH-HHHhhhhhhhcCCCccHHHHHH---HHccCC-
Q 013210 232 P--------ARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSM-MDLHQGALMLLGPTMNPKVAFE---LSERIP- 297 (447)
Q Consensus 232 ~--------~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l-~~~~~~~~~~~g~~~~~~~a~~---~~~~~~- 297 (447)
. ...+..+++.|+||.++.+|.|+ ||++.+ +...... ..... . ...+++......+ ......
T Consensus 182 ~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~-g~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~a~~~~~~~~~~ 257 (361)
T d1d2fa_ 182 EQPHIPWSNVARGDWALLTSGSKSFNIPALTG-AYGIIENSSSRDAYLSALKG-R--DGLSSPSVLALTAHIAAYQQGAP 257 (361)
T ss_dssp SSCCCCGGGTCCSSEEEEECSHHHHTCGGGCC-EEEEECSHHHHHHHHHHHHT-T--SCCCSCCHHHHHHHHHHHHHCHH
T ss_pred cccccccccccccccccccccccccccccccc-eeeecchhHHHHHHhhhccc-c--cccccchhhhHHHHHHHhhccch
Confidence 1 11246789999999999999998 887654 3333333 22222 1 2222333222221 222222
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQ 374 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~ 374 (447)
........+.++++.+.+.+.+.. ..+..|. .|.++++.+.. ..+...|..+|.. +
T Consensus 258 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~-------------------gg~~~~~~l~~~~~~~~~~~~~Ll~--~ 316 (361)
T d1d2fa_ 258 WLDALRIYLKDNLTYIADKMNAAFPELNWQIPQ-------------------STYLAWLDLRPLNIDDNALQKALIE--Q 316 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS-------------------BCSEEEEECGGGCCCHHHHHHHHHH--T
T ss_pred hhhcccccchhhHHHHHHHhhhhcccccccccC-------------------ceeEEEEEccCCCCCHHHHHHHHHH--h
Confidence 233444556777777777776542 2333232 45688888851 1234566666533 2
Q ss_pred cccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013210 375 FGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM 439 (447)
Q Consensus 375 ~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~ 439 (447)
+| +.+.-|.... + -.+++||||++ . +++++.+++|.++++++
T Consensus 317 ~g-v~v~pG~~F~----~-----------------~~~~~vRis~~-~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 317 EK-VAIMPGYTYG----E-----------------EGRGFVRLNAG-CPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp TC-EECEEGGGGC----G-----------------GGTTEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred CC-EEEEeccccC----C-----------------CCCCEEEEEEc-CCHHHHHHHHHHHHHHHHhc
Confidence 34 4555552210 0 02478999998 5 33455567777777665
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.95 E-value=5.6e-26 Score=226.39 Aligned_cols=242 Identities=17% Similarity=0.155 Sum_probs=172.9
Q ss_pred HHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 102 LNLSRQMAALEG----------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 102 ~~l~~~ia~l~g----------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.+||+.||++++ .+++++|+|+++|+.+++++++.+||+|+++.|.|+.+...+. ...|++++.++
T Consensus 87 ~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~----~~~g~~~v~v~ 162 (431)
T d1m7ya_ 87 PAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLK----WRTGVEIVPIH 162 (431)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT----TTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH----HhcCceecccc
Confidence 468888887642 3569999999999999999999999999999999998876652 11467777665
Q ss_pred CC-------CHHHHHHhhc-----cCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc---
Q 013210 172 IS-------DHEMVNSAIV-----QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA--- 233 (447)
Q Consensus 172 ~~-------d~~~l~~~i~-----~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~--- 233 (447)
.+ |++++++++. ..+++++++++|+||||.+.+ +++|+++|+++|+++|+||+|..+.++..
T Consensus 163 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~ 242 (431)
T d1m7ya_ 163 CTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFI 242 (431)
T ss_dssp CCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCC
T ss_pred ccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCC
Confidence 43 6777776652 247889999999999999986 77889999999999999999966544311
Q ss_pred ----------------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCC-CccHHHHHHHHccC
Q 013210 234 ----------------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP-TMNPKVAFELSERI 296 (447)
Q Consensus 234 ----------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~-~~~~~~a~~~~~~~ 296 (447)
..+..+++.|+||.+|.+|.|+ ||++.+++++......... .... ...+..+...+...
T Consensus 243 s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~Ri-G~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~a~l~~~ 318 (431)
T d1m7ya_ 243 SVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSS---FGLVSSQTQHLLSAMLSDK 318 (431)
T ss_dssp CHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCE-EEEEESCHHHHHHHHHHGG---GSCCCHHHHHHHHHHHHCH
T ss_pred CHHHHhhhcccccccccCceEEEEecCcccccCCCCcc-ceeccchhhhHHHHHHHhc---cccccccccchhhhhhccc
Confidence 0134699999999999999998 9999888776544433221 2222 22222222222221
Q ss_pred ----CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC------HHHHHHHH
Q 013210 297 ----PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET------EEKANRLM 366 (447)
Q Consensus 297 ----~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~------~~~~~~l~ 366 (447)
+.+.+..+++.++++.+.+.|++.++.+..|. .|.++|+.++. .+....|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~-------------------gg~f~w~~l~~~~~~~~~~~~~~l~ 379 (431)
T d1m7ya_ 319 KLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGN-------------------AGLFCWVDMRHLLRSNTFEAEMELW 379 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCC-------------------SSSEEEEECGGGSSSSSHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCC-------------------ceeEEEEECccccccCcccCHHHHH
Confidence 23444556678888999999998887765443 46689998852 33344566
Q ss_pred HHhh
Q 013210 367 NYLQ 370 (447)
Q Consensus 367 ~~l~ 370 (447)
.+|-
T Consensus 380 ~~ll 383 (431)
T d1m7ya_ 380 KKIV 383 (431)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=4e-26 Score=219.78 Aligned_cols=266 Identities=15% Similarity=0.152 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHhC-----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCH
Q 013210 101 VLNLSRQMAALEG-----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175 (447)
Q Consensus 101 ~~~l~~~ia~l~g-----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~ 175 (447)
..+||+.||++++ .++|++|+|+++++.++++ +||+|++..|+|+++...+. ..|.++..++.++-
T Consensus 58 ~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~~----~~d~v~i~~P~y~~~~~~~~-----~~g~~~v~v~~~~~ 128 (334)
T d2f8ja1 58 DEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMML----MFDRSVFFPPTYSCYRIFAK-----AVGAKFLEVPLTKD 128 (334)
T ss_dssp CHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHHH----HSSEEEECSSCCHHHHHHHH-----HHTCCEEECCCCTT
T ss_pred cHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHhh----hccccccccccccccccchh-----ccCCcccccccccc
Confidence 4679999999875 3459999999999887765 46899999999999987773 36888988887621
Q ss_pred HHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccCCCCeEEEeCCCccccC
Q 013210 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS-----PARLGADVVVHSISKFISG 250 (447)
Q Consensus 176 ~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~-----~~~~g~di~~~S~sK~~g~ 250 (447)
....++. .++++++++++|+||||.+.+.++|.+++ ++++++|+|++|..+... ....+..+++.|+||.++.
T Consensus 129 ~~~~~~~-~~~~~~l~l~nP~NPtG~~~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 206 (334)
T d2f8ja1 129 LRIPEVN-VGEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSL 206 (334)
T ss_dssp SCCCCCC-CCTTEEEEEESSCTTTCCCCCHHHHHHHH-TTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSC
T ss_pred ccccccc-cccceEEEecccccccceeecHHHhhccc-cceeEEeecccchhhcccccccccccCceEEEEecCccccch
Confidence 1112223 56899999999999999999998887765 689999999998333221 2233678999999999999
Q ss_pred CCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCC
Q 013210 251 GADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE 330 (447)
Q Consensus 251 ~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~ 330 (447)
+|.|+ ||+++++++++.+...+.. ...+...+..+...+...+++....+++.++++.+.+.|+++|+++..|
T Consensus 207 ~G~R~-G~~~~~~~~i~~l~~~~~~---~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~--- 279 (334)
T d2f8ja1 207 AAQRV-GYVVASEKFIDAYNRVRLP---FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRITDS--- 279 (334)
T ss_dssp TTTCE-EEEEECHHHHHHHHHHSCT---TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTCEECCC---
T ss_pred hhhhh-hhcccchHHHHHHHHhhcc---cccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCCCeECCC---
Confidence 99998 9999999999999877651 2223334444444444545566777888999999999999988776522
Q ss_pred CCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCC
Q 013210 331 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI 410 (447)
Q Consensus 331 ~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~ 410 (447)
.|+++++.++.. +...+.+.|... | +.+.- +
T Consensus 280 -----------------~g~f~~~~~~~~-~~~~~~~~L~~~---G-I~vr~-----------~---------------- 310 (334)
T d2f8ja1 280 -----------------RGNFVFVFMEKE-EKERLLEHLRTK---N-VAVRS-----------F---------------- 310 (334)
T ss_dssp -----------------CSSEEEEECCHH-HHHHHHHHHHHT---T-EECEE-----------E----------------
T ss_pred -----------------CceEEEEECCCC-CHHHHHHHHHHC---C-CEECC-----------C----------------
Confidence 355788888754 567888888753 3 33310 1
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 411 SAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 411 ~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
+++||||+| . .+ ..+++.++|++
T Consensus 311 -~~~vRis~g-~--~e-e~~~l~~~l~~ 333 (334)
T d2f8ja1 311 -REGVRITIG-K--RE-ENDMILRELEV 333 (334)
T ss_dssp -TTEEEEECC-C--HH-HHHHHHHHHHH
T ss_pred -CCeEEEEcC-C--HH-HHHHHHHHHhc
Confidence 368999999 3 33 34666666654
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.94 E-value=5e-25 Score=219.23 Aligned_cols=270 Identities=14% Similarity=0.152 Sum_probs=186.7
Q ss_pred HHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 102 LNLSRQMAALEG----------TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 102 ~~l~~~ia~l~g----------~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.+||+.||++++ .+.+++|+|+++|+.+++.+++.+||.|+++.|.|+++...+. ...|+++..++
T Consensus 86 ~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~----~~~g~~~v~v~ 161 (428)
T d1iaya_ 86 PEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLR----WRTGVQLIPIH 161 (428)
T ss_dssp HHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTT----TTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHH----HhcCCeEEEee
Confidence 468888887752 3579999999999999999999999999999999998876552 12478888876
Q ss_pred CC-------CHHHHHHhh-----ccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc---
Q 013210 172 IS-------DHEMVNSAI-----VQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA--- 233 (447)
Q Consensus 172 ~~-------d~~~l~~~i-----~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~--- 233 (447)
.+ |+++++.++ ..+++++|++++|+||||.+.+ +++|+++|++||+++|+|++|..+.++..
T Consensus 162 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~ 241 (428)
T d1iaya_ 162 CESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFV 241 (428)
T ss_dssp CCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCC
T ss_pred cccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCccccc
Confidence 53 666665443 1467899999999999999986 67899999999999999999966544311
Q ss_pred --------------CCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC-C
Q 013210 234 --------------RLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-P 297 (447)
Q Consensus 234 --------------~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~ 297 (447)
.....+++.|+||.++.+|.|+ ||++. ++.+.+.+..... ..........+..+.... .
T Consensus 242 s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRi-G~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~a~l~~~~ 316 (428)
T d1iaya_ 242 SIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRV-GIIYSFNDDVVNCARKMSS----FGLVSTQTQYFLAAMLSDEK 316 (428)
T ss_dssp CHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCE-EEEEESCHHHHHHHHHHHT----TSCCCHHHHHHHHHHTTCHH
T ss_pred ccccccchhhccccccceEEEEecCCCcccCCCccc-ccccccccchhhhhhhhhc----ccccccccccchhhhhhhhc
Confidence 1135689999999999999999 88877 5556666655443 222222222222222221 1
Q ss_pred ----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC------HHHHHHHHH
Q 013210 298 ----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET------EEKANRLMN 367 (447)
Q Consensus 298 ----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~------~~~~~~l~~ 367 (447)
.+.+..+.+.++++.+.+.|+..++++..|. .|.++|+.++. .+....+.+
T Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~-------------------gg~f~w~~l~~~~~~~~~~~~~~l~~ 377 (428)
T d1iaya_ 317 FVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNN-------------------AGLFCWMDLRPLLRESTFDSEMSLWR 377 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCS-------------------SSSEEEEECGGGCSSSSHHHHHHHHH
T ss_pred cccccccccccccchhHHHHHHHHHhCCCEEecCC-------------------cceEEEEECccccccCCCCCHHHHHH
Confidence 2344555677888899999988877665443 46789998852 233445555
Q ss_pred HhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013210 368 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT 424 (447)
Q Consensus 368 ~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~ 424 (447)
.|.. +.| +.+.-|..+ . .-.++++|||++ ..+
T Consensus 378 ~Ll~--~~g-V~v~PG~~F--------~-------------~~~~g~~Ris~a-~~~ 409 (428)
T d1iaya_ 378 VIIN--DVK-LNVSPGSSF--------E-------------CQEPGWFRVCFA-NMD 409 (428)
T ss_dssp HHHH--TSC-EECEEGGGG--------T-------------CSSSSEEEEECS-SSC
T ss_pred HHHH--hCC-EEEEcchhc--------C-------------CCCCCEEEEEeC-CCC
Confidence 5532 123 354445221 0 012589999998 543
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=1.8e-25 Score=219.72 Aligned_cols=288 Identities=19% Similarity=0.232 Sum_probs=193.1
Q ss_pred HHHHHHHHHHh----C----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAALE----G----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.+||+.+|+++ | .+++++|+|+++++..++++++.+||.|+++.|.|+.+...+.. .|..+..++.+
T Consensus 67 ~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~-----~g~~~~~~~~~ 141 (389)
T d2gb3a1 67 WELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKI-----AGVKLIPVTRR 141 (389)
T ss_dssp HHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHH-----HTCEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccccc-----cCccccccccc
Confidence 46777777665 3 35699999999999999999999999999999999998877732 45565555443
Q ss_pred ------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-------CCCC
Q 013210 174 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-------RLGA 237 (447)
Q Consensus 174 ------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-------~~g~ 237 (447)
+.+.+...+ .++++++++++|+||||.+.+ +++|+++|++||+++|+||+|..+.++.. ....
T Consensus 142 ~~~~~~~~~~~~~~~-~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~ 220 (389)
T d2gb3a1 142 MEEGFAIPQNLESFI-NERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDK 220 (389)
T ss_dssp GGGTSCCCTTGGGGC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTT
T ss_pred cccccchhhhhhhhc-ccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccccccccc
Confidence 334455555 678999999999999999986 77899999999999999999966654321 2256
Q ss_pred eEEEeCCCccccCCCCeeEEEEEcChHH-HHHHHHHhhhhhhhcCCCc-cHHHHHHHHccC-CcHHHHHHHHHHHHHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALMLLGPTM-NPKVAFELSERI-PHLGLRMKEHCHRALIFA 314 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~~~g~~~-~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~ 314 (447)
.+++.|+||.++.+|.|+ ||++++.+. ...+...... ..+... .+.++..++... .++....+.++++++.+.
T Consensus 221 ~~v~~s~sK~~~~~GlRi-G~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 296 (389)
T d2gb3a1 221 VVVIDSVSKKFSACGARV-GCLITRNEELISHAMKLAQG---RLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVL 296 (389)
T ss_dssp EEEEEESTTTTTCGGGCC-EEEECSCHHHHHHHHHHHHH---SCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCcccce-eeeeccchhHHHHHhhhhhc---cccccccccccccccccccchhcccccccccccchhhh
Confidence 788999999999999999 998886654 4444333331 222222 233333333333 234556667889999999
Q ss_pred HHHHhCCCe-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc---ccccccccccCcccccc
Q 013210 315 RRMKKLGLK-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA---QFGFMAVSLGYYETLMS 390 (447)
Q Consensus 315 ~~L~~~~~~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~---~~g~~~vs~G~~~s~~~ 390 (447)
+.|++++.. +..|. .|.++|+.++..+ ...|.+.|.... ..| +.+..|.
T Consensus 297 ~~L~~~~~~~~~~p~-------------------~g~~~~~~lp~~~-~~~~~~~ll~e~~l~~~~-v~v~pg~------ 349 (389)
T d2gb3a1 297 KKLEEHGLKRFTKPS-------------------GAFYITAELPVED-AEEFARWMLTDFNMDGET-TMVAPLR------ 349 (389)
T ss_dssp HHHHHTTCCCBCCCS-------------------BSSEEEEECSSSC-HHHHHHHHHHSCCBTTEE-EECEEGG------
T ss_pred hhhhhhccccccCCC-------------------ceEEEEEeCCCCC-HHHHHHHHHHhhhhhhCC-EEEEeCc------
Confidence 999998763 33332 5679999997432 344555443210 011 1222221
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHHh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSRM 439 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~~ 439 (447)
++.. + .|..++++|||++ .. +.++.++.|.++|++.
T Consensus 350 --~f~~----~------~~~~~~~iRis~~-~~~~~l~~a~~~L~~~lk~f 387 (389)
T d2gb3a1 350 --GFYL----T------PGLGKKEIRIACV-LEKDLLSRAIDVLMEGLKMF 387 (389)
T ss_dssp --GGCS----S------TTTTSSEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred --cccc----C------CCCCCCEEEEEEc-CCHHHHHHHHHHHHHHHHHh
Confidence 1110 0 1334689999998 53 2344456666666654
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.94 E-value=2.5e-25 Score=215.91 Aligned_cols=281 Identities=12% Similarity=0.101 Sum_probs=188.9
Q ss_pred CCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 97 FNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.++...+|++.+|+.+|.+ .+++|+|+++++..++..+. ++.+++..|.|..+..... . .+..+..++.+
T Consensus 55 p~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~~--~~~~~v~~p~~~~~~~~~~-~----~~~~~~~v~~~~ 127 (355)
T d1lc5a_ 55 PDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGLK--PRRAMIVTPGFAEYGRALA-Q----SGCEIRRWSLRE 127 (355)
T ss_dssp CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC--CSEEEEEESCCTHHHHHHH-H----TTCEEEEEECCG
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhhc--cccccccCCccceeccccc-c----ccccceeeeeec
Confidence 3444468999999999874 49999999999888776553 4455566677776655442 1 34455555443
Q ss_pred -----CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCe
Q 013210 174 -----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGAD 238 (447)
Q Consensus 174 -----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~d 238 (447)
..+++++++ .+++++|++++||||||.+.+ +++|+++|++|++++|+|++|..+.... ...+..
T Consensus 128 ~~~~~~~~~~~~~~-~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~ 206 (355)
T d1lc5a_ 128 ADGWQLTDAILEAL-TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHI 206 (355)
T ss_dssp GGTTCCCTTHHHHC-CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTE
T ss_pred cCCccceeeeeecc-ccccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccc
Confidence 224566666 788999999999999999987 6688888899999999999995544321 123578
Q ss_pred EEEeCCCccccCCCCeeEEEEEcChHH-HHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013210 239 VVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM 317 (447)
Q Consensus 239 i~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L 317 (447)
+++.|+||.+|.+|.|+ ||++++.+. .+.++..+. ....+.+.+.++..++.....+.+..+++.++++++.+.|
T Consensus 207 i~~~S~SK~~~l~GlR~-G~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l 282 (355)
T d1lc5a_ 207 WVLRSLTKFYAIPGLRL-GYLVNSDDAAMARMRRQQM---PWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQAL 282 (355)
T ss_dssp EEEEESTTTTTCTTTCC-EEEECCCHHHHHHHHHHSC---TTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccccccccccccc-cceeccchhhhHHHHhhcC---CccccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999987654 444544332 1222333334444444443446667778888999999999
Q ss_pred HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccC
Q 013210 318 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 318 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
.+.+.....|. .|.++++.++.. ...+.+.|... | +.+..|...
T Consensus 283 ~~~~~~~~~p~-------------------~~~f~~~~~~~~--~~~~~~~L~~~---g-v~vr~~~~f----------- 326 (355)
T d1lc5a_ 283 CQLPLLTVYPG-------------------RANYLLLRCERE--DIDLQRRLLTQ---R-ILIRSCANY----------- 326 (355)
T ss_dssp HTSTTEEECCC-------------------SSSEEEEEESCT--TCCHHHHHHTT---T-EECEECTTS-----------
T ss_pred hhcCCcEECCC-------------------CCEEEEEECCCC--HHHHHHHHHHC---C-cEEEeCccC-----------
Confidence 98765333443 456889998753 24566666642 3 344333110
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.+..+++||||+| . .+.++.|.++|+++
T Consensus 327 ----------~~~~~~~iRis~~-~---~~e~~~li~aL~~i 354 (355)
T d1lc5a_ 327 ----------PGLDSRYYRVAIR-S---AAQNERLLAALRNV 354 (355)
T ss_dssp ----------TTCCTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred ----------CCCCCCEEEEEeC-C---HHHHHHHHHHHHHh
Confidence 0234689999999 3 34466777777654
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.5e-25 Score=218.15 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=200.9
Q ss_pred HHHHHHHHHHh----C----CC-eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G----TE-AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g----~~-~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+||+.||+++ | .+ .+++|+|+++|+.+++++++++||.|+++.|.|+.+...+.. .|..+..++.
T Consensus 66 ~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~-----~g~~~~~~~~ 140 (382)
T d1u08a_ 66 QALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIAL-----SGGIVKRMAL 140 (382)
T ss_dssp HHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhhhh-----ccccceeccc
Confidence 46777777764 4 23 499999999999999999999999999999999998877632 4544444333
Q ss_pred C------CHHHHHHhhccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------C---
Q 013210 173 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------R--- 234 (447)
Q Consensus 173 ~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~------~--- 234 (447)
+ |++++++.+ +++++++++++||||||.+.+ +++|.++|++++++++.|+.|..+.+... .
T Consensus 141 ~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~ 219 (382)
T d1u08a_ 141 QPPHFRVDWQEFAALL-SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ 219 (382)
T ss_dssp CTTTCCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH
T ss_pred ccccccCCHHHHhhhh-ccCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccccccccccccc
Confidence 2 899999988 788999999999999999987 56777888899999999999854433221 1
Q ss_pred -CCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc-CCcHHHHHHHHHHHHHH
Q 013210 235 -LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALI 312 (447)
Q Consensus 235 -~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~~~ 312 (447)
....+++.|+||.++.+|.|+ ||+++++++++.+...... .....+.+.+.++..++.. .+++....+.++++++.
T Consensus 220 ~~~~~i~~~s~SK~~~~pG~Ri-G~~v~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (382)
T d1u08a_ 220 LRERAVAVSSFGKTYHMTGWKV-GYCVAPAPISAEIRKVHQY-LTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDI 297 (382)
T ss_dssp HHTTEEEEEEHHHHTTCGGGCC-EEEECCHHHHHHHHHHHHH-HTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHH
T ss_pred ccCcEEEEeeccccccCCcccc-hhhhccchhHHHHHhhhcc-cccccccccccccccccccchHHHHHHHHHHHhhhhh
Confidence 146799999999999999999 9999999999888766552 1233334445554444443 34455566678888899
Q ss_pred HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccCcccccc
Q 013210 313 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 313 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
+.+.++..+..+..|. .|.++|+.++. ..+...|.++|.. ++| +.+.-|....
T Consensus 298 l~~~~~~~g~~~~~p~-------------------gg~~~~~~~~~~~~~d~~e~~~~ll~--e~g-V~v~PG~~F~--- 352 (382)
T d1u08a_ 298 LVNALNESRLEILPCE-------------------GTYFLLVDYSAVSTLDDVEFCQWLTQ--EHG-VAAIPLSVFC--- 352 (382)
T ss_dssp HHHHTTSSSCEECCCC-------------------BSSEEEEECTTTCCSCHHHHHHHHHH--HSC-EECEEGGGGC---
T ss_pred hhhhhccCCcEEecCC-------------------ceEEEEEecCCCCCCCHHHHHHHHHH--HCC-EEEEcchhhC---
Confidence 9888877776665443 56789999873 2234556665532 134 3444452210
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
. -+...+++|||++ . ..+ +|+++++++++
T Consensus 353 -------~---------~~~~~~~~Ris~~-~-~~e----~l~~al~RL~~ 381 (382)
T d1u08a_ 353 -------A---------DPFPHKLIRLCFA-K-KES----TLLAAAERLRQ 381 (382)
T ss_dssp -------S---------SCCCSCEEEEECC-S-CHH----HHHHHHHHHTT
T ss_pred -------C---------CCCCCCEEEEEEe-C-CHH----HHHHHHHHHhC
Confidence 0 0123578999999 5 333 46666666654
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.94 E-value=2.5e-25 Score=219.63 Aligned_cols=286 Identities=13% Similarity=0.077 Sum_probs=192.6
Q ss_pred HHHHHHHHHHh--------CCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 102 LNLSRQMAALE--------GTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 102 ~~l~~~ia~l~--------g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
.+||+.||+++ ..+++++|+|+++++.+++.+++++||+|+++.|+|+.+...+. ..|.++..++.+
T Consensus 74 ~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~-----~~g~~~~~v~~~ 148 (403)
T d1wsta1 74 TPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFK-----YYDPEFISIPLD 148 (403)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHh-----hccccceeEeec
Confidence 56788888874 34679999999999999999999999999999999999988873 256666665543
Q ss_pred ----CHHHHH----Hhh--ccCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc--------
Q 013210 174 ----DHEMVN----SAI--VQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------- 232 (447)
Q Consensus 174 ----d~~~l~----~~i--~~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-------- 232 (447)
+...+. ... .+..+.++++.+|+||||.+.+ +++|+++|++||+++|+|++|..+.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~ 228 (403)
T d1wsta1 149 DKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKH 228 (403)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGG
T ss_pred ccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccc
Confidence 222221 111 1345667788999999999986 5688889999999999999997664431
Q ss_pred -cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCc----HHHHHHHHH
Q 013210 233 -ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH----LGLRMKEHC 307 (447)
Q Consensus 233 -~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~----l~~~~~~~~ 307 (447)
...+..+++.|+||+++ +|.|+ ||+++++++++.+....... ..+.....+.+......... +....+.+.
T Consensus 229 ~~~~~~~i~~~S~SK~~~-~G~Ri-G~~i~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (403)
T d1wsta1 229 FDDYGRVIYLGTFSKILA-PGFRI-GWVAAHPHLIRKMEIAKQSI--DLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYK 304 (403)
T ss_dssp GCSSSCEEEEEESTTTTC-GGGCC-EEEEECHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEccccceec-Ccccc-cccccchHHHHHHHHHHhhh--ccccccchhhhHHhhhhccccchhHHHHHHHHH
Confidence 13367899999999996 89999 99999999998877655421 22222222222222222222 334455667
Q ss_pred HHHHHHHHHHHhC---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccC
Q 013210 308 HRALIFARRMKKL---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 384 (447)
Q Consensus 308 ~~~~~l~~~L~~~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~ 384 (447)
++++.+.+.|.+. +..+..|. .|.++++.++...+...+.+.|.. .| +.+.-|.
T Consensus 305 ~~~~~~~~~L~~~~~~~~~~~~p~-------------------gg~~~~~~~~~~~~~~~~~~~l~~---~g-V~v~pg~ 361 (403)
T d1wsta1 305 PRRDAMLEALEEYMPEGVEWTKPE-------------------GGMFVRVTLPEGIDTKLMMERAVA---KG-VAYVPGE 361 (403)
T ss_dssp HHHHHHHHHHHHHCCTTCEECCCS-------------------BSSEEEEECCTTCCTTTTHHHHHH---TT-EECEEGG
T ss_pred HHHHHHHHHHHhhccCCeEEeCCC-------------------ceeEEEEECCCCCCHHHHHHHHHH---CC-EEEEech
Confidence 7888888888764 22443332 577999999854445566666665 23 4444442
Q ss_pred ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC---HHHHHHHHHHHHHHh
Q 013210 385 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT---LDQRWSQFEKALSRM 439 (447)
Q Consensus 385 ~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~---~~~~i~~l~~al~~~ 439 (447)
.+. . -+-.++++|||++ ..+ +++.++.|.++|++.
T Consensus 362 ~f~--------~-----------~~~~~~~iRi~~~-~~~~~~l~~al~rl~~~l~~~ 399 (403)
T d1wsta1 362 AFF--------V-----------HRDKKNTMRLNFT-YVPEETIREGVRRLAETIKEE 399 (403)
T ss_dssp GGS--------T-----------TCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred hhc--------C-----------CCCCCCEEEEEec-CCCHHHHHHHHHHHHHHHHHH
Confidence 211 0 0113579999998 533 344455666666543
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=6.9e-25 Score=215.65 Aligned_cols=292 Identities=13% Similarity=0.140 Sum_probs=219.0
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHH
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE 176 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 176 (447)
..+..+++|+++|+++|.+.+++++||++|+..++.++..++|.|++....|.++...+. ..+.++..++..|.+
T Consensus 88 ~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~-----~~~a~~~~~~~~d~~ 162 (401)
T d1fc4a_ 88 TQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVR-----LCKAKRYRYANNDMQ 162 (401)
T ss_dssp CBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHH-----TSCSEEEEECTTCHH
T ss_pred CcHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHcccc-----ccCceEEEEcCCChH
Confidence 356678999999999999999999999999999999999999999999999998887662 245567777777877
Q ss_pred HHHHhhc-----cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCcc----------CCCCeEEE
Q 013210 177 MVNSAIV-----QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPA----------RLGADVVV 241 (447)
Q Consensus 177 ~l~~~i~-----~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~----------~~g~di~~ 241 (447)
++++.++ ..++.+|+++++.++.|.+.|+++|.++|++||+++|+||+|+...+... .-.+|+++
T Consensus 163 ~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~ 242 (401)
T d1fc4a_ 163 ELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIIT 242 (401)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEE
T ss_pred HHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEE
Confidence 7776552 24567899999999999999999999999999999999999954433211 11489999
Q ss_pred eCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHH---HccCCcHHHHHHHHHHHHHHHHHHHH
Q 013210 242 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL---SERIPHLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~---~~~~~~l~~~~~~~~~~~~~l~~~L~ 318 (447)
.|++|.+|+.. ||++.+++++++.++...... ..+..+++..+.++ +..+....++.+++.++..++.+.+.
T Consensus 243 ~tl~Ka~gg~~---Gg~v~g~~~~~~~l~~~~~~~--~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~ 317 (401)
T d1fc4a_ 243 GTLGKALGGAS---GGYTAARKEVVEWLRQRSRPY--LFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMS 317 (401)
T ss_dssp EESSSTTCSSS---CEEEEECHHHHHHHHHHCHHH--HHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccccCC---cccccCCHHHHHHHHcCChhh--hhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhc
Confidence 99999997542 599999999998887654433 33334443333322 22223335577888999999999999
Q ss_pred hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCC
Q 013210 319 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 398 (447)
Q Consensus 319 ~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~ 398 (447)
..+..+... .++++.+.+.+...+..+.++|... |+ .++ .+.+|++.
T Consensus 318 ~~g~~~~~~--------------------~~pIv~v~~~~~~~a~~~~~~L~~~---Gi-~v~------~i~~PtVp--- 364 (401)
T d1fc4a_ 318 AAGFTLAGA--------------------DHAIIPVMLGDAVVAQKFARELQKE---GI-YVT------GFFYPVVP--- 364 (401)
T ss_dssp HTTCCBCCS--------------------SSSEEEEEEECHHHHHHHHHHHHHT---TE-ECC------EECTTSSC---
T ss_pred ccCCccCCC--------------------CCCEEEEEECCHHHHHHHHHHHHHC---Cc-eEE------eECCCCCC---
Confidence 887644321 2348888888877788888888863 32 322 22345432
Q ss_pred CCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcC
Q 013210 399 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSG 443 (447)
Q Consensus 399 ~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~ 443 (447)
.....|||++. ..+++++|+.+.++|+++.++.
T Consensus 365 -----------~g~~~lRi~~~-a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 365 -----------KGQARIRTQMS-AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp -----------TTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHT
T ss_pred -----------CCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 12356999999 9999999999999999887653
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.5e-24 Score=212.10 Aligned_cols=289 Identities=12% Similarity=0.110 Sum_probs=217.8
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHH
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE 176 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 176 (447)
..+...+||+.||+++|.+.+++++||+.|+..++.++..++|.|++....|.+...... ..+.++..++..|++
T Consensus 81 ~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~-----~~~~~~~~~~hnd~~ 155 (383)
T d1bs0a_ 81 YSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAAS-----LSPSQLRRFAHNDVT 155 (383)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----TSSSEEEEECTTCHH
T ss_pred cchHHHHHHHHHHHhcCCCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccc-----cCCCcceEecchHHH
Confidence 356779999999999999999999999999999999999999999999999988877662 256778888899999
Q ss_pred HHHHhhcc--CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc--------cCCCCeEEEeCCCc
Q 013210 177 MVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP--------ARLGADVVVHSISK 246 (447)
Q Consensus 177 ~l~~~i~~--~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~--------~~~g~di~~~S~sK 246 (447)
++++.+.. ++.++|+++.+++++|.+.|+++|.++|++||+++++||+|+...+.. .....++++.|++|
T Consensus 156 ~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~k 235 (383)
T d1bs0a_ 156 HLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGK 235 (383)
T ss_dssp HHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSS
T ss_pred HHHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccc
Confidence 99988743 457799999999999999999999999999999999999994433221 12356788999999
Q ss_pred cccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHH-HHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013210 247 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKLGLK 323 (447)
Q Consensus 247 ~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~ 323 (447)
.+|..| |+++++.+.++.++..........+.++...++.. .+..+ .....+.+++.++..++.+.|++.++.
T Consensus 236 a~g~~G----g~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~ 311 (383)
T d1bs0a_ 236 GFGVSG----AAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFT 311 (383)
T ss_dssp TTSSCC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred cccccc----cccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999764 89999999998887664433223333332222222 22111 223456677788889999999888775
Q ss_pred eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHH
Q 013210 324 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE 403 (447)
Q Consensus 324 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~ 403 (447)
+... .++++.+.+.+.+.+..+.+.|... | +.++. +.+|++.
T Consensus 312 ~~~~--------------------~s~Ii~v~~g~~~~a~~~~~~L~~~---G-i~v~~------~~~PtVp-------- 353 (383)
T d1bs0a_ 312 LADS--------------------CSAIQPLIVGDNSRALQLAEKLRQQ---G-CWVTA------IRPPTVP-------- 353 (383)
T ss_dssp ECSC--------------------CSSBCCEEEESHHHHHHHHHHHHHT---T-EECCE------ECTTSSC--------
T ss_pred cCCC--------------------CCCEEEEEECCHHHHHHHHHHHHHC---C-ceEEE------EcCCCCC--------
Confidence 4321 2337778888877788888888863 3 33332 2345433
Q ss_pred HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 404 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 404 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.....|||++. ..++++.|+.+.++|+.+
T Consensus 354 ------~g~~~lRi~~~-a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 354 ------AGTARLRLTLT-AAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp ------TTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred ------CCCceEEEEeC-CCCCHHHHHHHHHHHHhc
Confidence 12357999999 999999999999998764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.94 E-value=3.8e-24 Score=208.49 Aligned_cols=289 Identities=13% Similarity=0.115 Sum_probs=213.0
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh--cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCC
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 174 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d 174 (447)
..+..++||++||+++|.+.+++++||..||..++.++ ..++|.|+.....|.+....+. ..+.++..++.+|
T Consensus 88 ~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~-----ls~a~~~~f~Hnd 162 (396)
T d2bwna1 88 TTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIK-----RNAGPKRIFRHND 162 (396)
T ss_dssp CBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHH-----HSCCCEEEECTTC
T ss_pred CchHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhh-----ccccCceEeecch
Confidence 34667899999999999999999999999999999887 4678888889988888777662 3567888888899
Q ss_pred HHHHHHhhc---cCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc----------cCCCCeEEE
Q 013210 175 HEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----------ARLGADVVV 241 (447)
Q Consensus 175 ~~~l~~~i~---~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~----------~~~g~di~~ 241 (447)
.+++++.++ ..+.++|+++.+.++.|.+.|+++|.++|++||+.+++||+|+-..+.. ....+|+++
T Consensus 163 ~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~ 242 (396)
T d2bwna1 163 VAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFN 242 (396)
T ss_dssp HHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEE
T ss_pred HHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeee
Confidence 988887663 2356789999999999999999999999999999999999993322211 112479999
Q ss_pred eCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHH-HccCC--cHHHHHHHHHHHHHHHHHHHH
Q 013210 242 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL-SERIP--HLGLRMKEHCHRALIFARRMK 318 (447)
Q Consensus 242 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~-~~~~~--~l~~~~~~~~~~~~~l~~~L~ 318 (447)
+|++|.+|.. ||++++++++++.++............++...++... +.-+. ....+.+++..+.+++.+.|.
T Consensus 243 gTlsKa~g~~----Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~ 318 (396)
T d2bwna1 243 GTLAKAYGVF----GGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLK 318 (396)
T ss_dssp EESSSTTCSC----CEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccccccc----ccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999975 4999999999999887655443333333333322222 11111 223345567788889999998
Q ss_pred hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh-hcccccccccccccCccccccccccccC
Q 013210 319 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSSTS 397 (447)
Q Consensus 319 ~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l-~~~~~~g~~~vs~G~~~s~~~~~a~~~~ 397 (447)
+.++.+... .++++.+.+.+.+.+..+.+.| ++ .|+ .++ .+.+|++.
T Consensus 319 ~~g~~~~~~--------------------~spIvpv~ig~~~~~~~~a~~lL~e---~Gi-~v~------~i~~PtVp-- 366 (396)
T d2bwna1 319 ALGMPIIDH--------------------GSHIVPVVIGDPVHTKAVSDMLLSD---YGV-YVQ------PINFPTVP-- 366 (396)
T ss_dssp HHTCCBCCC--------------------SSSCEEEECCCHHHHHHHHHHHHHH---HCE-ECC------EECTTTSC--
T ss_pred hcCCCcCCC--------------------CCCEEEEEeCCHHHHHHHHHHHHHh---CCE-EEE------EECCCcCC--
Confidence 877644311 1339999998877777777764 33 343 222 23345443
Q ss_pred CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 398 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 398 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.....|||++. ..++++.|+.|.++|+++
T Consensus 367 ------------~g~~rlRi~ls-a~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 367 ------------RGTERLRFTPS-PVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp ------------TTCCEEEECCC-TTSCHHHHHHHHHHHHHH
T ss_pred ------------CCCeeEEEEeC-ccCCHHHHHHHHHHHHHh
Confidence 12467999999 999999999999999875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=2.5e-25 Score=220.93 Aligned_cols=290 Identities=14% Similarity=0.179 Sum_probs=194.8
Q ss_pred HHHHHHHHHHh----C-----CCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 102 LNLSRQMAALE----G-----TEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 102 ~~l~~~ia~l~----g-----~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.+||+.||+++ | .+.+++|+|+++|+.+++.+++.+||.|+++.|.|+.+...++ ..|..+..++.
T Consensus 83 ~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~~~~ 157 (420)
T d1vp4a_ 83 PVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFR-----QYLANFVVVPL 157 (420)
T ss_dssp HHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHHHH-----HHhhhcccccc
Confidence 46777777764 3 3459999999999999999999999999999999999887773 25777766654
Q ss_pred C----CHHHHHHhhc--------cCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc----
Q 013210 173 S----DHEMVNSAIV--------QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA---- 233 (447)
Q Consensus 173 ~----d~~~l~~~i~--------~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~---- 233 (447)
+ +++.++..+. ...+.++++++|+||||.+.+ +++|+++|++|++++|+|++|..+.++..
T Consensus 158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~ 237 (420)
T d1vp4a_ 158 EDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDP 237 (420)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCC
T ss_pred cccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCccccc
Confidence 3 5665544321 123446667899999999985 67899999999999999999976654321
Q ss_pred -----CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC---CcHHHHHHH
Q 013210 234 -----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKE 305 (447)
Q Consensus 234 -----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~~~~~ 305 (447)
..+..+++.|++|+++ +|.|+ ||+++++++++.+.+..... ....+...+..+...+... +++....+.
T Consensus 238 ~~~~~~~~~~i~~~s~sk~~~-~G~Ri-G~~~~~~~~i~~l~~~~~~~-~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~ 314 (420)
T d1vp4a_ 238 IFKIGGPERVVLLNTFSKVLA-PGLRI-GMVAGSKEFIRKIVQAKQSA-DLCSPAITHRLAARYLERYDLLEQLKPTIEL 314 (420)
T ss_dssp HHHHHCTTTEEEEEESTTTTC-GGGCE-EEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHSCHHHHTHHHHHH
T ss_pred ccccccccceeEEeccccccc-ccccc-ccccccchhhhhhhhhhhhc-cccCchhhhhhhhhhcccccccccchhHHHH
Confidence 2256788899999886 89999 99999999999887765522 1222233333333333222 223445566
Q ss_pred HHHHHHHHHHHHHhC-----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013210 306 HCHRALIFARRMKKL-----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 380 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~-----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~v 380 (447)
++++++.+.+.|++. +.++..|. .|.++|+.+++..+...+.+.|... | +.+
T Consensus 315 ~~~~~~~~~~~L~~~~~~~~g~~~~~p~-------------------gg~f~~~~~~~~~d~~~~~~~l~~~---g-V~v 371 (420)
T d1vp4a_ 315 YRRKRTVMLNALEEYFSDIPGVKWVKSE-------------------GGLFIWLTLPEGFDTWEMFEYAKRK---K-VFY 371 (420)
T ss_dssp HHHHHHHHHHHHHHHSTTSTTCEECCCS-------------------BSSEEEEECCTTCCTTTTHHHHHHH---T-EEC
T ss_pred hhhhcccchhhhhhhhccCCCcEEecCC-------------------ceEEEEEECCCCCCHHHHHHHHHHC---C-eEE
Confidence 777778888888764 22443332 5669999997433344555556543 3 454
Q ss_pred cccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH---HHHHHHHHHHHHhhhc
Q 013210 381 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD---QRWSQFEKALSRMQDS 442 (447)
Q Consensus 381 s~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~---~~i~~l~~al~~~~~~ 442 (447)
.-|..+.. .+...+++|||++ ..+.+ +.++.|.++|++..+.
T Consensus 372 ~PG~~F~~-------------------~~~~~~~iRls~~-~~~~e~l~~a~~rL~~~l~~~~~~ 416 (420)
T d1vp4a_ 372 VPGRVFKV-------------------YDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKE 416 (420)
T ss_dssp EEGGGGCT-------------------TCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EechhhCC-------------------CCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHhhHh
Confidence 44522110 0123578999998 64443 4456666677666543
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.93 E-value=6.9e-25 Score=216.35 Aligned_cols=327 Identities=15% Similarity=0.095 Sum_probs=213.7
Q ss_pred cccccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh------
Q 013210 64 ASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQL------ 134 (447)
Q Consensus 64 ~att~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l------ 134 (447)
++++++...+ +++.+++...++|+...+.+++.....++++|+++|+++|++ +++||+++|++++.++...
T Consensus 34 as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~ 113 (404)
T d1qz9a_ 34 NSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQAT 113 (404)
T ss_dssp TTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcc
Confidence 4556666666 888888888888876555666665677889999999999985 5999999999999876532
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHh
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD 214 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~ 214 (447)
..+++.|++++..|++....+.....+.....+......+++.+++++ +++|++|++++++|.||.++|+++|+++|++
T Consensus 114 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~ 192 (404)
T d1qz9a_ 114 RSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAI-DQDTAVVMLTHVNYKTGYMHDMQALTALSHE 192 (404)
T ss_dssp HSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHC-STTEEEEEEESBCTTTCBBCCHHHHHHHHHH
T ss_pred cCCCcEEEEeccccchHHHHHHhhhheeeeeceeccccccchhHHHhc-CCCceEEEEecccccccceecHHHHhccccc
Confidence 356888888887777655444322211112222222233778888999 8999999999999999999999999999999
Q ss_pred cCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCcccc-CCCCeeEEEEEcChHHHHHHHHHhhh----------------
Q 013210 215 KGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQG---------------- 275 (447)
Q Consensus 215 ~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~---------------- 275 (447)
+|+++++|.+| +.+.++....++|+++.|.||+++ ++|. +|+++.++...+.+.....+
T Consensus 193 ~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (404)
T d1qz9a_ 193 CGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS--QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEP 270 (404)
T ss_dssp HTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC--CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCB
T ss_pred cccceeEEeeccccccccccccccceEEEEechhhcccCCce--EEEEEechhhhhhCCccccccCCccccccccccccc
Confidence 99999999999 556677777899999999999985 4543 37888877665443211000
Q ss_pred ---hhhhcCCCccHHHH---HH---HHccC--CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhc
Q 013210 276 ---ALMLLGPTMNPKVA---FE---LSERI--PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMAN 343 (447)
Q Consensus 276 ---~~~~~g~~~~~~~a---~~---~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~ 343 (447)
.......+...... .. .+... ..+..+..........+.+.+... +.++..|.. +.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~---~~--------- 338 (404)
T d1qz9a_ 271 SNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPRE---HA--------- 338 (404)
T ss_dssp CSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSS---GG---------
T ss_pred cccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCC---cc---------
Confidence 00011111221111 11 11111 112222223333333344444333 446665542 11
Q ss_pred cCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC-
Q 013210 344 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL- 422 (447)
Q Consensus 344 ~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~- 422 (447)
..+++++|.+++. ..+...|... | +.++. + .++.||||+| .
T Consensus 339 ---~r~~~vsf~~~~~---~~v~~~L~~~---g-i~~~~-----------r----------------~~~~lRiS~~-h~ 380 (404)
T d1qz9a_ 339 ---KRGSHVSFEHPEG---YAVIQALIDR---G-VIGDY-----------R----------------EPRIMRFGFT-PL 380 (404)
T ss_dssp ---GBCSEEEEECTTH---HHHHHHHHTT---T-EECEE-----------E----------------TTTEEEEECC-TT
T ss_pred ---ceeeEEEEecCCH---HHHHHHHHHC---C-CEEee-----------c----------------CCCeEEEECC-CC
Confidence 3577999998864 4566677652 2 22111 1 1468999997 6
Q ss_pred CCHHHHHHHHHHHHHHhhhcC
Q 013210 423 GTLDQRWSQFEKALSRMQDSG 443 (447)
Q Consensus 423 ~~~~~~i~~l~~al~~~~~~~ 443 (447)
.+++++|+.+.++|+++-+..
T Consensus 381 ynt~~did~~~~~L~~vl~~~ 401 (404)
T d1qz9a_ 381 YTTFTEVWDAVQILGEILDRK 401 (404)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhC
Confidence 799999999999998875543
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7.3e-24 Score=207.83 Aligned_cols=297 Identities=14% Similarity=0.184 Sum_probs=202.5
Q ss_pred CCCchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 96 HFNPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
.....++++++.+++++|.+ .++|++|||+|+++++..++.+|+++++....+.+....... .. .+..+..++.
T Consensus 49 ~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~ 125 (388)
T d1h0ca_ 49 DMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIG--ER-IGARVHPMTK 125 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHH--HH-HC--CBCCBC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeecccc--cc-cccccccccc
Confidence 34566799999999999985 388999999999999999999999999999888776544321 11 2333333332
Q ss_pred C-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCC
Q 013210 173 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSIS 245 (447)
Q Consensus 173 ~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~s 245 (447)
+ |.+++++.+.++++++|++++.+|.+|.++|+++|.++|+++|+++++|+++ +.+.++...+++|+++.|.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~ 205 (388)
T d1h0ca_ 126 DPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQ 205 (388)
T ss_dssp CTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESS
T ss_pred CCccccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccccccceeccccc
Confidence 2 7777777665678999999999999999999999999999999999999999 55677888889999999999
Q ss_pred ccccCCCCeeEEEEEcChHHHHHHHHHhhh-------------------hhhhcCCCccHHH--HH-HHHccC--CcHHH
Q 013210 246 KFISGGADIIAGAVCGPANLVNSMMDLHQG-------------------ALMLLGPTMNPKV--AF-ELSERI--PHLGL 301 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~-------------------~~~~~g~~~~~~~--a~-~~~~~~--~~l~~ 301 (447)
|++++++. + |+++.++..++.+...... ......+++.... +. .++..+ ..+..
T Consensus 206 K~~~gp~g-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~ 283 (388)
T d1h0ca_ 206 KALNAPPG-T-SLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLEN 283 (388)
T ss_dssp STTCCCTT-C-EEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred ccccCCCc-e-EEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhcccc
Confidence 99988875 3 8888888777655321100 0001111222211 11 111111 11344
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013210 302 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs 381 (447)
+.++..++.+++.+.+...+..+..+. +. ....++++|.++...+...+...|.. ++| |.++
T Consensus 284 ~~~~~~~l~~~l~~~~~~~g~~~~~~~----~~-----------~rs~~i~~~~~p~~~~~~~~~~~L~~--~~g-I~v~ 345 (388)
T d1h0ca_ 284 SWRQHREAAAYLHGRLQALGLQLFVKD----PA-----------LRLPTVTTVAVPAGYDWRDIVSYVID--HFD-IEIM 345 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCBSSCS----GG-----------GBCTTEEEEECCTTCCHHHHHHHHHH--HHC-EECE
T ss_pred ccccccchhHHHHHHHhhcCcccccCC----HH-----------HcCCeEEEEECCCCCCHHHHHHHHHh--cCC-EEEe
Confidence 555667778888888887776444332 10 02334889999743335666666654 234 5667
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~ 439 (447)
.|.. |. ..+.+||| +| ..++.++|+.+.++|+++
T Consensus 346 ~G~~--------~~---------------~~~~iRis~~g-~~~t~edid~li~aL~~~ 380 (388)
T d1h0ca_ 346 GGLG--------PS---------------TGKVLRIGLLG-CNATRENVDRVTEALRAA 380 (388)
T ss_dssp ECCG--------GG---------------TTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred CCch--------hh---------------cCCEEEEeCCC-CCCCHHHHHHHHHHHHHH
Confidence 6622 11 24689999 89 766677777777777664
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.91 E-value=4.9e-23 Score=202.91 Aligned_cols=216 Identities=13% Similarity=0.132 Sum_probs=150.3
Q ss_pred ccccCCCCchHHHHHHHHHHHh---C---C--CeEEEeCChHHHHHHHHHHh--------cCCCCeEEEeCCCchhHHHH
Q 013210 91 FIYSRHFNPTVLNLSRQMAALE---G---T--EAAYCTASGMSAISSVLMQL--------CSSGGHVVAARTLYGGTHAL 154 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~---g---~--~~~~~tsggt~A~~~al~~l--------~~~gd~Vi~~~~~y~~~~~~ 154 (447)
|.+.........+|++.|+++. | . ..|++++|+++++++++.+| +.+|++||++.|.|+.|...
T Consensus 92 y~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~ 171 (425)
T d2hoxa1 92 YFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ 171 (425)
T ss_dssp SSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHH
T ss_pred eecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHH
Confidence 4444334344467999999885 3 1 24999999999999999998 46789999999999999776
Q ss_pred HHhhcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc--
Q 013210 155 LTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-- 232 (447)
Q Consensus 155 ~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~-- 232 (447)
.. ++.. ....+ + .|.+.+++++ +++++++++++||||||.+.. +-.+++.+|.|++|....+.+
T Consensus 172 ~~-~~~~-~~~~~---~-~D~~~~~~~~-~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~ 237 (425)
T d2hoxa1 172 TK-YFDK-KGYVW---A-GNAANYVNVS-NPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIK 237 (425)
T ss_dssp HH-HSCB-TTEEE---E-EEGGGGTTCS-CGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCC
T ss_pred HH-HcCC-CCCcc---C-CCHHHHHhhC-CCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchh
Confidence 63 3221 11222 2 1667777777 788999999999999998842 223689999999994332322
Q ss_pred cCCCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc------------CCcH
Q 013210 233 ARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER------------IPHL 299 (447)
Q Consensus 233 ~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~------------~~~l 299 (447)
.....++++.|+||.||.+|+|+ ||++. ++.+.+.+...... .....+.+++.++..++.. .+.+
T Consensus 238 ~~~~~~Ivl~S~SK~fglaGlRi-Gw~i~~~~~i~~~~~~~~~~-~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~ 315 (425)
T d2hoxa1 238 YKADEDILLFTMSKFTGHSGSRF-GWALIKDESVYNNLLNYMTK-NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLN 315 (425)
T ss_dssp SCBCCSEEEEEHHHHTSCGGGCC-EEEEECCHHHHHHHHHHHHH-HTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHH
T ss_pred hhcCCeEEEEeCHHhccCcchhe-eeEEeCCHHHHHHHHHhhcc-CcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 22367899999999999999999 98654 56777777766552 1223334445444443321 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Q 013210 300 GLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 300 ~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
....++++++++++.+.|++.+.
T Consensus 316 ~~~~~~l~~r~~~l~~~L~~~~~ 338 (425)
T d2hoxa1 316 TFGFKKLRERWVNITALLDQSDR 338 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 44566678888899999987764
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.90 E-value=1.1e-23 Score=204.99 Aligned_cols=195 Identities=18% Similarity=0.160 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhCC---CeEEEeCChHHHHHHHHHHhcCCCCeEE-Ee-CCCchhHHHHHHhhcCcccCeeEEEeCCCCHH
Q 013210 102 LNLSRQMAALEGT---EAAYCTASGMSAISSVLMQLCSSGGHVV-AA-RTLYGGTHALLTHFFPRACNITTTFVDISDHE 176 (447)
Q Consensus 102 ~~l~~~ia~l~g~---~~~~~tsggt~A~~~al~~l~~~gd~Vi-~~-~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 176 (447)
+++++..++.++. +.+++|+||++|+..++.++. +|+.|+ ++ .+.|+++...+. ..|+++ ++.+|++
T Consensus 53 ~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~-~~~~vi~~~~~~~~~~~~~~~~-----l~g~~~--v~~~d~e 124 (366)
T d2aeua1 53 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-PKKVIHYLPELPGHPSIERSCK-----IVNAKY--FESDKVG 124 (366)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC-CSEEEEECSSSSCCTHHHHHHH-----HTTCEE--EEESCHH
T ss_pred HHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC-CCCEEEEecCCCcchhHHHHHH-----hcCCeE--ECCCCHH
Confidence 5676766766653 569999999999999999875 455554 43 578998887763 256654 5567999
Q ss_pred HHHHhhccCCceEEEEEcCCCC-CccccCHHHHHHHHHhcCCEEEEeCCCCCCCC------CccCCCCeEEEeCCCcccc
Q 013210 177 MVNSAIVQGRTKVLYFESISNP-TLAVANIPELSRLAHDKGVTVVVDNTFSPLVL------SPARLGADVVVHSISKFIS 249 (447)
Q Consensus 177 ~l~~~i~~~~t~lV~i~~~~Np-tG~v~~l~~I~~la~~~gi~livD~~~~~~~~------~~~~~g~di~~~S~sK~~g 249 (447)
+|++++ +++|++|++++|+|| ++.+.++++|+++|++||+++++|++|+...+ .+...++|++++|+||+++
T Consensus 125 ~l~~~i-~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~ 203 (366)
T d2aeua1 125 EILNKI-DKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME 203 (366)
T ss_dssp HHHTTC-CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS
T ss_pred HHHHhc-CCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEeccccccc
Confidence 999999 889999999999886 44677999999999999999999999943221 2335589999999999988
Q ss_pred CCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcH-HHHHHHHHHHHHH
Q 013210 250 GGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL-GLRMKEHCHRALI 312 (447)
Q Consensus 250 ~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l-~~~~~~~~~~~~~ 312 (447)
++ ++ ||+++++++++.++..+. ..+.++++..+++++++++++ ..+++++.++++.
T Consensus 204 g~--~~-G~i~~~~~~i~~~~~~~~----~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~ 260 (366)
T d2aeua1 204 GP--RG-GLLAGKKELVDKIYIEGT----KFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKN 260 (366)
T ss_dssp SC--SC-EEEEEEHHHHHHHHHHHH----TTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cc--ce-eEEEecHHHHHHHHHHHh----cccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55 55 999999999999987766 456666665555555444332 2355555444443
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.89 E-value=2.3e-22 Score=198.09 Aligned_cols=244 Identities=11% Similarity=0.049 Sum_probs=161.0
Q ss_pred cccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhC--------CCeEEEeCCh-----HHHHHHHH
Q 013210 66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--------TEAAYCTASG-----MSAISSVL 131 (447)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g--------~~~~~~tsgg-----t~A~~~al 131 (447)
.+++++.+ +++....... ..|.|+-. .-..+||+.+++++. .+.++.+.++ ..++..++
T Consensus 44 ~~~~~~~V~~a~~~~~~~~-----~~~~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~ 116 (401)
T d7aata_ 44 KPYVLNCVRKAEAMIAAKK-----MDKEYLPI--AGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFL 116 (401)
T ss_dssp CCCCCHHHHHHHHHHHHTT-----CCCCCCCT--TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhCC-----CCCCCCCC--CCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhh
Confidence 34555555 3344444321 22445532 223578888888752 2334444322 24667777
Q ss_pred HHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-------CHHHHHHhhc--cCCceEEEEEcCCCCCccc
Q 013210 132 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAV 202 (447)
Q Consensus 132 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~--~~~t~lV~i~~~~NptG~v 202 (447)
+.++.+||.|++++|.|+.+...+. ..|.+++.++.. +++.+.+.+. .++++++++++|+||||.+
T Consensus 117 ~~l~~pGd~Vlv~~P~y~~y~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~ 191 (401)
T d7aata_ 117 QRFFKFSRDVYLPKPSWGNHTPIFR-----DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVD 191 (401)
T ss_dssp HHHCTTCCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCC
T ss_pred HhhcCCCceEEEecCCCcchhhHHH-----HcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCcccc
Confidence 8889999999999999999988873 368888777652 6777776662 3678999999999999999
Q ss_pred cC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH
Q 013210 203 AN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCGPANLVN 267 (447)
Q Consensus 203 ~~---l~~I~~la~~~gi~livD~~~~~~~~~~~------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~ 267 (447)
.+ +++|+++|++|++++|+|++|..+.++.. .....+++.|++|.++.+|+|+ ||++++.++++
T Consensus 192 ~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~Ri-G~~~~~~~~~~ 270 (401)
T d7aata_ 192 PRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA-GAFTVICRDAE 270 (401)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEECSSHH
T ss_pred CCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeecccc-ceeecchHHHH
Confidence 86 67899999999999999999987766421 1134578889999999999999 99888766555
Q ss_pred HHHHHhhh------hhhhcCCCccHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 268 SMMDLHQG------ALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 268 ~l~~~~~~------~~~~~g~~~~~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
.+...... ......+...+..+...+... ..+....+++.++++.+.+.|++++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 338 (401)
T d7aata_ 271 EAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGS 338 (401)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44332110 101112222222222222211 12334556678889999999998754
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.89 E-value=1.5e-21 Score=189.17 Aligned_cols=292 Identities=14% Similarity=0.079 Sum_probs=185.4
Q ss_pred CCchHHHHHHHHHHHhCCCe----EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCc-hhHHHHHHhhcCcccCeeEEEeC
Q 013210 97 FNPTVLNLSRQMAALEGTEA----AYCTASGMSAISSVLMQLCSSGGHVVAARTLY-GGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~----~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y-~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.....+++++++++++|+++ +++|+|||+++++++.++..+++.+++....+ +.......... . ........+
T Consensus 31 ~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 108 (361)
T d1m32a_ 31 NIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLM-G-IAHHAYDCG 108 (361)
T ss_dssp HTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHH-T-CCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhh-h-ccccccccc
Confidence 34567899999999999843 77889999999999999988877666555544 33332222211 1 222332222
Q ss_pred CC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCC
Q 013210 172 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSI 244 (447)
Q Consensus 172 ~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~ 244 (447)
.. +.+...... .+++++|++++.+|.||.++|+++|.++|+++|+++++|.+| +...++..++++|++++|.
T Consensus 109 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~ 187 (361)
T d1m32a_ 109 EVARPDVQAIDAILNA-DPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSA 187 (361)
T ss_dssp TTSCCCHHHHHHHHHH-CTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEES
T ss_pred ccCCccchhhHHHHHh-ccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEEeee
Confidence 22 223333444 678999999999999999999999999999999999999999 5567788889999999999
Q ss_pred CccccCCCCeeEEEEEcChHHHHHHHHH---------------hhhhhhhcCCCcc-HHHH-HHHHccC---CcHHHHHH
Q 013210 245 SKFISGGADIIAGAVCGPANLVNSMMDL---------------HQGALMLLGPTMN-PKVA-FELSERI---PHLGLRMK 304 (447)
Q Consensus 245 sK~~g~~g~~igG~l~~~~~~~~~l~~~---------------~~~~~~~~g~~~~-~~~a-~~~~~~~---~~l~~~~~ 304 (447)
+|++++|.. + |+++.+++..+.+... ........+++.. ...+ ...+... .......+
T Consensus 188 ~K~l~gp~G-~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (361)
T d1m32a_ 188 NKCIQGVPG-F-AFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQ 265 (361)
T ss_dssp SSTTCCCSS-E-EEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cccccCCCC-c-eEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHH
Confidence 999965533 4 8888777655432110 0000001111111 1111 1111111 11223444
Q ss_pred HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccc
Q 013210 305 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSL 382 (447)
Q Consensus 305 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~l~~~l~~~~~~g~~~vs~ 382 (447)
+.....+.+.+.++..+..+..+.-. ....+++|.++.. .....+...|...+ +.++.
T Consensus 266 ~~~~~~~~l~~~~~~~g~~~~~~~~~----------------rs~~v~~~~~p~~~~~~~~~~~~~l~~~g----i~i~~ 325 (361)
T d1m32a_ 266 RYQQNQRSLVAGMRALGFNTLLDDEL----------------HSPIITAFYSPEDPQYRFSEFYRRLKEQG----FVIYP 325 (361)
T ss_dssp HHHHHHHHHHHHHHHTTCCBSSCGGG----------------BCSSEEEEECCCCTTCCHHHHHHHHHHTT----EECEE
T ss_pred HHHHHHHHHHHHHhhcCCcccCChhh----------------cCCcEEEEECCCCCCCCHHHHHHHHHHCC----cEEEC
Confidence 56677778888888877644322101 1234788888632 23466777777633 45555
Q ss_pred cCccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013210 383 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 383 G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~ 439 (447)
|+. ...+.+|||. | . +++++|+.|.++|+++
T Consensus 326 G~~------------------------~~~~~~Ris~~g-~-~~~~di~~lv~al~~~ 357 (361)
T d1m32a_ 326 GKV------------------------SQSDCFRIGNIG-E-VYAADITALLTAIRTA 357 (361)
T ss_dssp CCC------------------------SSSCEEEEECCS-S-CCHHHHHHHHHHHHHH
T ss_pred CCc------------------------CCCCEEEEeCCC-C-CCHHHHHHHHHHHHHH
Confidence 521 1246799994 5 4 5566799998888765
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.89 E-value=2.4e-21 Score=188.80 Aligned_cols=300 Identities=14% Similarity=0.148 Sum_probs=203.4
Q ss_pred ccCCCCchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 93 YSRHFNPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
++.......+++++.+++++|.+ .++|++|||+++++++..++.+|+++++....|.+..... .... .+.....
T Consensus 45 r~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~ 121 (377)
T d1vjoa_ 45 LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVD--MAGR-YGADVRT 121 (377)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHH--HHHH-TTCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhh--hhhh-hcccccc
Confidence 55556677899999999999974 3778899999999999999999999999888876554332 1111 2333333
Q ss_pred eCC--C---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEe
Q 013210 170 VDI--S---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVH 242 (447)
Q Consensus 170 v~~--~---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~ 242 (447)
+.. . +.+..+....++++++|++++.+|.||.+.|+++|.++||++|+++++|.++ +.+.++...+++|+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~ 201 (377)
T d1vjoa_ 122 ISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYS 201 (377)
T ss_dssp EECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEC
T ss_pred cccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeee
Confidence 222 1 4555555443678999999999999999999999999999999999999999 55677888899999999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhh----------------hhhhcCCCccHHHHHHHHc-----cCCcHHH
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQG----------------ALMLLGPTMNPKVAFELSE-----RIPHLGL 301 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~----------------~~~~~g~~~~~~~a~~~~~-----~~~~l~~ 301 (447)
|.+|++++++. + |+++.++..++.......+ .......+........+.. .......
T Consensus 202 s~~K~~~gp~g-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~ 279 (377)
T d1vjoa_ 202 CSQKGLGCSPG-A-SPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLAN 279 (377)
T ss_dssp CSSSTTCSCSS-C-EEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred cccccccCCCE-E-EEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchH
Confidence 99999877664 2 7788887776654321100 0001112222111111111 1122445
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013210 302 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 302 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs 381 (447)
+.++.+++..++.+.+...+.....+.-. ...++++|.+++..+...+...|.. .+| +.++
T Consensus 280 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----------------rs~~v~~~~~p~~~~~~~l~~~L~~--~~g-I~v~ 340 (377)
T d1vjoa_ 280 CWQRHQKNVEYLWERLEDIGLSLHVEKEY----------------RLPTLTTVCIPDGVDGKAVARRLLN--EHN-IEVG 340 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBSSCGGG----------------BCSSEEEEECCTTCCHHHHHHHHHH--HHC-EECE
T ss_pred HHHHHHHHhhhhhhhhhccCceeecChHh----------------cCCeEEEEECCCCCCHHHHHHHHHh--cCC-EEEe
Confidence 66667788888999998877644332211 1334888998743335667766643 134 5666
Q ss_pred ccCccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHhh
Q 013210 382 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 382 ~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~~ 440 (447)
.|.. + ..++.+||| +| ..++.+.|+.|.++|+++-
T Consensus 341 ~G~~--------~---------------~~~~~~Ris~~g-~~~t~edi~~lv~al~~~l 376 (377)
T d1vjoa_ 341 GGLG--------E---------------LAGKVWRVGLMG-FNSRKESVDQLIPALEQVL 376 (377)
T ss_dssp ECCG--------G---------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHHHH
T ss_pred cCcc--------c---------------ccCCEEEEecCc-CCCCHHHHHHHHHHHHHHh
Confidence 6621 1 124689999 79 8888888999999998763
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.2e-21 Score=191.40 Aligned_cols=293 Identities=11% Similarity=0.091 Sum_probs=190.9
Q ss_pred hHHHHHHHHHHHhCC------CeEEEeCChHHHHHHHHHHhc---CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 100 TVLNLSRQMAALEGT------EAAYCTASGMSAISSVLMQLC---SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 100 ~~~~l~~~ia~l~g~------~~~~~tsggt~A~~~al~~l~---~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
...++++.+.++++. +.++||+|||+++++++.+++ ++||+|++....+.+..... ...+ .+..+..+
T Consensus 37 ~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~--~~~~-~~~~~~~~ 113 (382)
T d2bkwa1 37 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFAD--CLRS-YGAQVDVV 113 (382)
T ss_dssp HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHH--HHHH-TTCEEEEE
T ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhh--hccc-cccccccc
Confidence 345566666666653 348999999999999999986 57999999988877655333 1222 35454443
Q ss_pred CC------CCHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhc--CCEEEEeCCC--CCCCCCccCCCCeEE
Q 013210 171 DI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTF--SPLVLSPARLGADVV 240 (447)
Q Consensus 171 ~~------~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~--~~~~~~~~~~g~di~ 240 (447)
.. .+.+.+++++.+.+++++++.+.+|.||...|++++.++|+++ ++++++|.++ +.+++++..+++|++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~ 193 (382)
T d2bkwa1 114 RPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFA 193 (382)
T ss_dssp CCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEE
T ss_pred cccCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEE
Confidence 32 2678888777567899999999999999999999999998876 5999999998 677888889999999
Q ss_pred EeCCCccc-cCCCCeeEEEEEcChHHHHHHHHHhhh----------------------hhhhcCCCccHHHHHHHHccCC
Q 013210 241 VHSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQG----------------------ALMLLGPTMNPKVAFELSERIP 297 (447)
Q Consensus 241 ~~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~----------------------~~~~~g~~~~~~~a~~~~~~~~ 297 (447)
+.|.||++ |++| + |+++.+++.++.+.....+ .......+++....+.+...++
T Consensus 194 ~~s~~K~l~gP~G--~-g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~ 270 (382)
T d2bkwa1 194 LTASQKAIGAPAG--L-SISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALK 270 (382)
T ss_dssp EEESSSTTCCCSC--E-EEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred eecccccCcCCCc--h-hhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHH
Confidence 99999999 5566 4 8899888877655321110 0001112333222222222222
Q ss_pred -----cHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 298 -----HLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 298 -----~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
.+..+.+++.++++++.+.+.+... ....+..... ....+++|.+++.++.. ..|+.
T Consensus 271 ~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~--------------~s~~v~~~~~~~~~~~~---~~L~~ 333 (382)
T d2bkwa1 271 EILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNM--------------SAHGLTAVYVADPPDVI---AFLKS 333 (382)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTT--------------BCSSCEEEECSCHHHHH---HHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhc--------------cCCcEEEEcCCCHHHHH---HHHHH
Confidence 2344556677788888888876433 2222111111 12347788888765444 44443
Q ss_pred ccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 372 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 372 ~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
+| +.++.|..+. ..++.+||| +| ..++++.++.+.++|+.+.+.
T Consensus 334 ---~g-i~i~~G~~~~----------------------~~~~~~Ri~~~G-~~~~~e~i~~l~~~l~~i~~~ 378 (382)
T d2bkwa1 334 ---HG-VVIAGGIHKD----------------------IGPKYIRIGHMG-VTACNKNLPYMKNCFDLIKLA 378 (382)
T ss_dssp ---TT-EECBCCCCTT----------------------TGGGEEEECCCG-GGTSSTTCTHHHHHHHHHHHH
T ss_pred ---CC-eEEECCCChh----------------------hcCCEEEEeCCc-CCCCHHHHHHHHHHHHHHHHH
Confidence 33 4556552110 124679999 99 666666677777777766543
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.88 E-value=4.8e-21 Score=187.45 Aligned_cols=302 Identities=14% Similarity=0.170 Sum_probs=196.5
Q ss_pred ccCCCCchHHHHHHHHHHHhCCCe---EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 93 YSRHFNPTVLNLSRQMAALEGTEA---AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g~~~---~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
++......++++++.|++++|+++ ++|++|||.++++++..++.+|+++++....+.+...... ..+ .+.....
T Consensus 44 r~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~--~~~-~~~~~~~ 120 (388)
T d2ch1a1 44 FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEM--SER-YGADVRT 120 (388)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHH--HHH-TTCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccchhh--hhh-hcccccc
Confidence 455566788999999999999753 6677899999999999999999999988887766543331 112 3434333
Q ss_pred eCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEe
Q 013210 170 VDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVH 242 (447)
Q Consensus 170 v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~ 242 (447)
+... +.+.++.+....+++++++.+.+|.+|.+.|+++|.++|+++|+++++|.++ +..+++..++++|+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~ 200 (388)
T d2ch1a1 121 IEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYT 200 (388)
T ss_dssp EECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEEC
T ss_pred cccccccccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEE
Confidence 3222 5666666665678999999999999999999999999999999999999998 56678888899999999
Q ss_pred CCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh-------------------hhhcCCCccHHHHHHHHccC-----Cc
Q 013210 243 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGA-------------------LMLLGPTMNPKVAFELSERI-----PH 298 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-------------------~~~~g~~~~~~~a~~~~~~~-----~~ 298 (447)
|.+|++++++. + |+++.+++.++.+.....+. ......+........+...+ ..
T Consensus 201 s~~K~~~gp~G-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~ 278 (388)
T d2ch1a1 201 GAQKVLGAPPG-I-TPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEG 278 (388)
T ss_dssp CCC-CCCCCSS-C-EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccCCCCe-E-EEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhh
Confidence 99999987765 3 88888887776553211000 00111222222221111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013210 299 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM 378 (447)
Q Consensus 299 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~ 378 (447)
...+.++.......+...+...+.....+. +. ....++++|.++...+..++...|.. ++| +
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------~rs~~v~~~~~p~g~~~~~l~~~l~~--~~g-I 340 (388)
T d2ch1a1 279 LENQIKRRIECAQILYEGLGKMGLDIFVKD----PR-----------HRLPTVTGIMIPKGVDWWKVSQYAMN--NFS-L 340 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCBSSCS----GG-----------GBCTTEEEEECCTTCCHHHHHHHHHH--HHC-B
T ss_pred hHHHHHHHHHHHHHHHhhhhhcccccccCC----HH-----------HhCCeEEEEECCCCCCHHHHHHHHhh--cCC-E
Confidence 233334444444555555555444322221 11 01334889999743335567666644 234 5
Q ss_pred cccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHhhh
Q 013210 379 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 379 ~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
.++.|.. +. ..+.+||| +| ..++.+.|+.|.++|+++-+
T Consensus 341 ~v~~G~~--------~~---------------~~~~~RIs~~g-~~~t~edI~~ll~alke~L~ 380 (388)
T d2ch1a1 341 EVQGGLG--------PT---------------FGKAWRVGIMG-ECSTVQKIQFYLYGFKESLK 380 (388)
T ss_dssp CCBCCCG--------GG---------------TTTEEEEECCG-GGCSHHHHHHHHHHHHHHHH
T ss_pred EEeCCCc--------cc---------------cCCEEEEcCCc-CCCCHHHHHHHHHHHHHHHH
Confidence 6666622 11 13679999 89 77777777777777766543
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.87 E-value=4.3e-21 Score=189.59 Aligned_cols=246 Identities=10% Similarity=0.023 Sum_probs=157.4
Q ss_pred cccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhC--------CCe--EEEeCChHHHHHHHHHHh-
Q 013210 66 ATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--------TEA--AYCTASGMSAISSVLMQL- 134 (447)
Q Consensus 66 tt~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g--------~~~--~~~tsggt~A~~~al~~l- 134 (447)
.++++|.+.+..+.+... +...|.|+-. .-..+||+.+++++. .+. ++.|++++.++..+...+
T Consensus 46 ~~~~~~~V~~a~~~~~~~---~~~~~~Y~p~--~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 120 (412)
T d1ajsa_ 46 QPWVLPVVRKVEQRIANN---SSLNHEYLPI--LGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLA 120 (412)
T ss_dssp CCCCCHHHHHHHHHHHTC---TTCCCCCCCT--TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhC---CCcCCCCCCC--CCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHH
Confidence 445555664444333222 1234556543 223578888988752 222 566777777776655443
Q ss_pred ------cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeE-EEe---CC----CCHHHHHHhhc--cCCceEEEEEcCCCC
Q 013210 135 ------CSSGGHVVAARTLYGGTHALLTHFFPRACNITT-TFV---DI----SDHEMVNSAIV--QGRTKVLYFESISNP 198 (447)
Q Consensus 135 ------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~-~~v---~~----~d~~~l~~~i~--~~~t~lV~i~~~~Np 198 (447)
+.+||.|++++|.|+.+...+.. .|.+. ... +. .|.+.+++.+. .++++++++++||||
T Consensus 121 ~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~-----~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NP 195 (412)
T d1ajsa_ 121 RWYNGTNNKDTPVYVSSPTWENHNGVFTT-----AGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNP 195 (412)
T ss_dssp HHSSSSSCCCSCEEEEESCCTHHHHHHHH-----TTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTT
T ss_pred HHhhhcCCCCCEEEEeCCcchhhHHHHHH-----cCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCC
Confidence 58999999999999999888742 45432 221 11 16666665531 467899999999999
Q ss_pred CccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------------CCCCeEEEeCCCccccCCCCeeEEEEEcCh
Q 013210 199 TLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCGPA 263 (447)
Q Consensus 199 tG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~ 263 (447)
||.+.+ +++|+++|++||+++++||+|..+.++.. .....+++.|+||.++.+|+|+ ||++.+.
T Consensus 196 TG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~-G~~~~~~ 274 (412)
T d1ajsa_ 196 TGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERV-GNLTVVA 274 (412)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCE-EEEEEEC
T ss_pred cCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCc-cccccch
Confidence 999986 77999999999999999999977765421 1145788999999999999999 8887765
Q ss_pred HHHHHHHHHhh------hhhhhcCCCccHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 264 NLVNSMMDLHQ------GALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 264 ~~~~~l~~~~~------~~~~~~g~~~~~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
...+.+..... .......+...+..+..+.... .++....+++.++++.+.+.|++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~ 346 (412)
T d1ajsa_ 275 KEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT 346 (412)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44433322211 0111122222333332222211 22344556688889999999988754
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=4.1e-21 Score=183.29 Aligned_cols=315 Identities=19% Similarity=0.150 Sum_probs=192.6
Q ss_pred cccccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEE
Q 013210 64 ASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVA 143 (447)
Q Consensus 64 ~att~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~ 143 (447)
++.|-+.|+++.+.++.+...| ...|| .+|.+.+||+.+|+++|.+.+++++|||+|+.++++++.++||.+++
T Consensus 5 ~~~~~t~p~p~v~~A~~~a~~g----~~~yg--~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~ 78 (343)
T d1m6sa_ 5 RSDTVTKPTEEMRKAMAQAEVG----DDVYG--EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVIL 78 (343)
T ss_dssp SCGGGCCCCHHHHHHHHTCCCC----CGGGT--CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCCTTCEEEE
T ss_pred ccccCCCCCHHHHHHHHhhhcC----CcccC--CCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhccCCceec
Confidence 3556566666656555544322 23455 46889999999999999999999999999999999999999999999
Q ss_pred eCCCchhHHHHHHhhcCcccCeeEEEeCC----CCHHHHHHhhcc-----CCceEEEE-EcCCCCCccccC---HHHHHH
Q 013210 144 ARTLYGGTHALLTHFFPRACNITTTFVDI----SDHEMVNSAIVQ-----GRTKVLYF-ESISNPTLAVAN---IPELSR 210 (447)
Q Consensus 144 ~~~~y~~~~~~~~~~~~~~~g~~~~~v~~----~d~~~l~~~i~~-----~~t~lV~i-~~~~NptG~v~~---l~~I~~ 210 (447)
..+.|..+......... .+..+..++. .|++.++..+.. .++..+.+ ..++|+.|.+.| +++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 156 (343)
T d1m6sa_ 79 EADSHIFWYEVGAMAVL--SGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICT 156 (343)
T ss_dssp ETTCHHHHSSTTHHHHH--TCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHH
T ss_pred cccccceeeeccccccc--ccceeeccccccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHH
Confidence 99988655432211111 2333333332 288888888721 23444444 567788888876 557778
Q ss_pred HHHhcCCEEEEeCCCCCCCC-----Ccc--CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCC
Q 013210 211 LAHDKGVTVVVDNTFSPLVL-----SPA--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT 283 (447)
Q Consensus 211 la~~~gi~livD~~~~~~~~-----~~~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~ 283 (447)
+|+++|+++++|++++.+.. ... ....+..+.+.+|..++. . +|+++...+.+......+... ..+..
T Consensus 157 ~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~-~~~~~~~~~~~~~~~~~~~~~--~~~~~ 231 (343)
T d1m6sa_ 157 IAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP--V-GSVVVGDRDFIERARKARKML--GGGMR 231 (343)
T ss_dssp HHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS--S-CEEEEECHHHHHHHHHHHHHH--TCCCS
T ss_pred HHHhcCeEEEeccccccccccccccchhhhcccccccccccccccccc--c-cccccccHHHHhhhHhhCccc--ccccc
Confidence 88999999999999843221 110 112445555555555433 2 377788888776666554421 22222
Q ss_pred ccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHH
Q 013210 284 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEK 361 (447)
Q Consensus 284 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~ 361 (447)
.....+............+.+...++..++.+.+.+.+. ....|. ...++++.+++ ...
T Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~ 292 (343)
T d1m6sa_ 232 QAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDV-------------------KTNMVILRTDNLKVN 292 (343)
T ss_dssp STHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGC-------------------CSSEEEEECTTSSSC
T ss_pred hhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCccCCCC-------------------CceEEEEEeCCCccc
Confidence 222222111111111111233444555556666655443 222221 23488888873 233
Q ss_pred HHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 362 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 362 ~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
+.+|.+.|.. .|++...+ .++.|||+++ ...+++.|+.+.++|+++-+
T Consensus 293 a~~l~~~L~~---~Gi~v~~~----------------------------~~~~iRi~~~-~~~t~edid~~v~~l~~v~~ 340 (343)
T d1m6sa_ 293 AHGFIEALRN---SGVLANAV----------------------------SDTEIRLVTH-KDVSRNDIEEALNIFEKLFR 340 (343)
T ss_dssp HHHHHHHHHH---HTEECEEE----------------------------ETTEEEEECC-TTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---CCCEEecC----------------------------CCCEEEEECC-CCCCHHHHHHHHHHHHHHHH
Confidence 5678888876 34322111 1467999999 88889999999888888754
Q ss_pred c
Q 013210 442 S 442 (447)
Q Consensus 442 ~ 442 (447)
+
T Consensus 341 ~ 341 (343)
T d1m6sa_ 341 K 341 (343)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.86 E-value=1.6e-20 Score=185.42 Aligned_cols=244 Identities=11% Similarity=0.074 Sum_probs=156.0
Q ss_pred ccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC--------Ce--EEEeCChHHHHHHHH--HHh
Q 013210 67 TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT--------EA--AYCTASGMSAISSVL--MQL 134 (447)
Q Consensus 67 t~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~--------~~--~~~tsggt~A~~~al--~~l 134 (447)
+++++.+.+..+.+... +...|.|+-. .-..++|+.+++++.. +. ++.+.++..++..++ ...
T Consensus 46 ~~~~~~V~~A~~~l~~~---~~~~~~Y~p~--~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (412)
T d1yaaa_ 46 PWVLPSVKAAEKLIHND---SSYNHEYLGI--TGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK 120 (412)
T ss_dssp BCCCHHHHHHHHHHHTC---TTCCCCCCCT--TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhC---cccCCCCCCC--CCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhc
Confidence 34445554433333321 2334666642 2235788899887521 22 233445555554443 345
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-------CHHHHHHhhc--cCCceEEEEEcCCCCCccccC-
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN- 204 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~- 204 (447)
+.+||.|++++|.|+.+...+. ..|.++..++.. +.+.+++.+. +++++++++++||||||.+.+
T Consensus 121 ~~~gd~Vlip~P~~~~y~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~ 195 (412)
T d1yaaa_ 121 FFPDKLVYLSKPTWANHMAIFE-----NQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTS 195 (412)
T ss_dssp HCTTCCEEEEESCCTTHHHHHH-----TTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCH
T ss_pred cCCCCEEecccccCchhHHHHH-----HcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCH
Confidence 6789999999999999988773 357777766542 6666666552 356789999999999999986
Q ss_pred --HHHHHHHHHhcCCEEEEeCCCCCCCCCc---------------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH
Q 013210 205 --IPELSRLAHDKGVTVVVDNTFSPLVLSP---------------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 267 (447)
Q Consensus 205 --l~~I~~la~~~gi~livD~~~~~~~~~~---------------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~ 267 (447)
+++|+++|+++++++++|++|..+.++. ......+++.|+||.++.+|+|+ ||++++.+.+.
T Consensus 196 ~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri-G~~~~~~~~~~ 274 (412)
T d1yaaa_ 196 EQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERV-GCFHLALTKQA 274 (412)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCE-EEEEEECCSCT
T ss_pred HHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCce-EEEEEchhhhh
Confidence 7789999999999999999997776532 11245789999999999999999 99987654322
Q ss_pred HHHH-----------HhhhhhhhcCCCccHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 268 SMMD-----------LHQGALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 268 ~l~~-----------~~~~~~~~~g~~~~~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
.+.. ... ......+...+..+...+... +++....+.+.++++.+.+.|++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~ 346 (412)
T d1yaaa_ 275 QNKTIKPAVTSQLAKIIR-SEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGT 346 (412)
T ss_dssp THHHHHHHHHHHHHHHHH-TTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1111 111 111122222333333332221 22344556678888999999988754
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=2e-19 Score=175.03 Aligned_cols=306 Identities=16% Similarity=0.190 Sum_probs=203.0
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+.++++|+++|+++|.+.+++|+|||+|+.++++++ +++||+|+++..+|.++...+. ..|.+++++|.+
T Consensus 30 G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~-----~~g~~pv~~d~~~~~ 104 (376)
T d1mdoa_ 30 GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIV-----LLGANPVMVDVDRDT 104 (376)
T ss_dssp SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBCTTT
T ss_pred CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchh-----ccccceeeecccccc
Confidence 5788999999999999999999999999999999998 8899999999999999988873 368888888765
Q ss_pred ---CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCCc---cCCCCeEEEeCCCc
Q 013210 174 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSP---ARLGADVVVHSISK 246 (447)
Q Consensus 174 ---d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~~---~~~g~di~~~S~sK 246 (447)
|+++|++++ +++|++|++. |..|...|+++|.++|+++|+++|+|++|+.. .+.. ...|..+.++..+|
T Consensus 105 ~~~d~~~l~~~i-~~~tkaIi~~---h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K 180 (376)
T d1mdoa_ 105 LMVTPEHIEAAI-TPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIK 180 (376)
T ss_dssp CCBCHHHHHHHC-CTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred cCCCHHHHHHhc-CCCCeEEEEe---CCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcC
Confidence 899999999 8899999864 46799999999999999999999999998432 2221 23344455555679
Q ss_pred cccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh--------------------hcCCCccHHHHHHHHccCCcHHHHHHH
Q 013210 247 FISGGADIIAGAVCG-PANLVNSMMDLHQGALM--------------------LLGPTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 247 ~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~--------------------~~g~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
.++.++ ||+++. ++++.++++..+..+.. .....++...|+.....+..+.+.+++
T Consensus 181 ~l~~g~---GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~ 257 (376)
T d1mdoa_ 181 NITCAE---GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNAR 257 (376)
T ss_dssp SSCSSS---CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCCCC---CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHH
Confidence 998543 577655 56677777665432100 011223445555555566777778888
Q ss_pred HHHHHHHHHHHHHhCCCe-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---HHHHHHHHhhccccccccccc
Q 013210 306 HCHRALIFARRMKKLGLK-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE---KANRLMNYLQNYAQFGFMAVS 381 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~---~~~~l~~~l~~~~~~g~~~vs 381 (447)
..++++++.+.|++.+.. +..+. ..... .-..+.+.+.... .-..+++.|...+ |.++
T Consensus 258 r~~~~~~~~~~L~~~~~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~Rd~l~~~L~~~g----I~~~ 319 (376)
T d1mdoa_ 258 RAAIAAQYHQAMADLPFQPLSLPS-WEHIH-------------AWHLFIIRVDEARCGITRDALMASLKTKG----IGTG 319 (376)
T ss_dssp HHHHHHHHHHHHHTSSCEECCCCS-SCEEC-------------CCSCEEEECCHHHHSSCHHHHHHHHHHTT----BCCB
T ss_pred Hhhhhhhhhhhccccccccccccc-ccccc-------------cccccccccccccchhhHHHHHHHHHHCC----CCee
Confidence 899999999999887652 22221 11000 0112333333211 1246777777632 4444
Q ss_pred ccCccccccccccc---cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 382 LGYYETLMSCSGSS---TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 382 ~G~~~s~~~~~a~~---~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
.... .+-..|... .....+..+. +....|.|-+. ..-+++.++.+.++|+++
T Consensus 320 ~~y~-~~~~~~~~~~~~~~~~~p~a~~----~~~~~i~LP~~-~~lt~~ei~~I~~~i~~i 374 (376)
T d1mdoa_ 320 LHFR-AAHTQKYYRERFPTLTLPDTEW----NSERICSLPLF-PDMTESDFDRVITALHQI 374 (376)
T ss_dssp CCCC-CGGGSHHHHHHSTTCCCHHHHH----HHTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred eECc-chhcCHHHHhhCCCCCCHHHHH----HHhCEEEccCC-CCCCHHHHHHHHHHHHHH
Confidence 3321 111111100 0011111111 12456777666 666778888888888775
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.3e-20 Score=183.31 Aligned_cols=224 Identities=14% Similarity=0.093 Sum_probs=148.5
Q ss_pred ccccCCCCchHHHHHHHHHHHhCC--------Ce--EEEeCChHHHHHHHH--HHhcCCCCeEEEeCCCchhHHHHHHhh
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGT--------EA--AYCTASGMSAISSVL--MQLCSSGGHVVAARTLYGGTHALLTHF 158 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~--------~~--~~~tsggt~A~~~al--~~l~~~gd~Vi~~~~~y~~~~~~~~~~ 158 (447)
|.|+-. .-..++|+.+|+++.. +. .+.+.+|+.+..+++ ...+.+||.|++++|.|+.+...+.
T Consensus 63 ~~Y~p~--~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~-- 138 (396)
T d2q7wa1 63 KNYLGI--DGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN-- 138 (396)
T ss_dssp CCCCCT--TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH--
T ss_pred CCCCCC--cCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHH--
Confidence 445532 2235788999887521 22 445666666655444 3446899999999999999988773
Q ss_pred cCcccCeeEEEeCCC-------CHHHHHHhhc--cCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCC
Q 013210 159 FPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFS 226 (447)
Q Consensus 159 ~~~~~g~~~~~v~~~-------d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~ 226 (447)
..|.++..++.. +...+++... .++++++++++|+||||.+.+ +++|+++|++|++++|+|++|.
T Consensus 139 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~ 215 (396)
T d2q7wa1 139 ---SAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQ 215 (396)
T ss_dssp ---HTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT
T ss_pred ---HcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEecccc
Confidence 367777766543 4455444331 457889999999999999986 6688999999999999999998
Q ss_pred CCCCCcc-----------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhh-----hhhcCCCcc-HHHH
Q 013210 227 PLVLSPA-----------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA-----LMLLGPTMN-PKVA 289 (447)
Q Consensus 227 ~~~~~~~-----------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-----~~~~g~~~~-~~~a 289 (447)
.+.++.. .....+++.|++|.++.+|.|+ ||++.+...++.+....... ......+.. +.++
T Consensus 216 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 294 (396)
T d2q7wa1 216 GFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERV-GACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVV 294 (396)
T ss_dssp TSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCC-EEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred ccccCCccCchHhhhhhhhcccccccccccccccccCCCc-cccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHH
Confidence 7766421 1245788899999999999999 99888766555443322100 011222222 2222
Q ss_pred HHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 290 FELSER-------IPHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 290 ~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
..++.. .+++....++++++++.+.+.|++++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 334 (396)
T d2q7wa1 295 ATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA 334 (396)
T ss_dssp HHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 222221 122334445678889999999998764
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.85 E-value=5.9e-20 Score=184.00 Aligned_cols=220 Identities=13% Similarity=0.066 Sum_probs=142.9
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHH-HHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAIS-SVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~-~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
....+.++|+.+|+++|++.++|+++||++.+ +++.+++++||+||++..+|.++...+. .+.. .+..+.+++.+
T Consensus 64 ~~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~-~l~~-~~~~~~~~~~~~~ 141 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSAL-AMAG-GRPVYLQTNRNPY 141 (462)
T ss_dssp TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHT-TTTC-CEEEEECEEECTT
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHH-HHhc-CCceeeecccccc
Confidence 34567899999999999999999988876655 5577889999999999999999887652 2222 23333332221
Q ss_pred -----------CHHH---------HHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCc
Q 013210 174 -----------DHEM---------VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP 232 (447)
Q Consensus 174 -----------d~~~---------l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~ 232 (447)
+.+. +++++ ..++.++++.+.+|..|.+.|+++|+++|+++|+++++|++| .+..+.+
T Consensus 142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~ 220 (462)
T d1c4ka2 142 GFIGGIYDSDFDEKKIRELAAKVDPERAK-WKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIP 220 (462)
T ss_dssp CCEEEECGGGSCHHHHHHHTTTSSHHHHT-CSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSG
T ss_pred cccCCCChHHhhHHHHHhhhhhhcHHhhh-ccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccC
Confidence 2222 23333 456778888888899999999999999999999999999998 3333221
Q ss_pred --------------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHH---------HHHHHHhhhhhhhcCCCccHHHH
Q 013210 233 --------------ARLGADVVVHSISKFISGGADIIAGAVCGPANLV---------NSMMDLHQGALMLLGPTMNPKVA 289 (447)
Q Consensus 233 --------------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~---------~~l~~~~~~~~~~~g~~~~~~~a 289 (447)
...++|++++|+||.+|+++. |+++..+...+ ..++.... .....++.....++
T Consensus 221 ~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~--g~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~sp~~~~~as 297 (462)
T d1c4ka2 221 MMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQ--TSQIHKKDSHIKGQLRYCDHKHFNNSFN-LFMSTSPFYPMYAA 297 (462)
T ss_dssp GGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTT--CEEEEEECGGGTTSTTCCCHHHHHHHHH-HHSCSSCCHHHHHH
T ss_pred cCCcchhhccccccccCCccEEEEecCcccccccc--eEEEEeccccccccchhhhHHHHHHhhh-hcccCCchHHHHHH
Confidence 122469999999999998764 34444433222 12222111 00022222222222
Q ss_pred HHHHc---cCCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013210 290 FELSE---RIPHLGLRMKEHCHRALIFARRMKKLGL 322 (447)
Q Consensus 290 ~~~~~---~~~~l~~~~~~~~~~~~~l~~~L~~~~~ 322 (447)
..+.. ......+..++..++++++++.+++.+.
T Consensus 298 l~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~ 333 (462)
T d1c4ka2 298 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGS 333 (462)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 21111 1122334556778888899999988754
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.85 E-value=1.6e-19 Score=179.83 Aligned_cols=225 Identities=13% Similarity=0.083 Sum_probs=150.0
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEe
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 170 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 170 (447)
..|+ .+|++.+||+.+|+++|.+.+++|+||+.|+.+++++++++||+|+.... +..+...+.. .|.....+
T Consensus 69 d~Y~--~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~-f~~~~~~i~~-----~g~~~~~~ 140 (456)
T d1c7ga_ 69 EAYA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMY-FTTTRFHQEK-----NGATFVDI 140 (456)
T ss_dssp CCSS--SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSC-CHHHHHHHHH-----TTEEEEEC
T ss_pred hhcc--CCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcc-hHHHHHHHHH-----cCceeeec
Confidence 4576 48999999999999999999999999999999999999999998887665 4434333311 34444332
Q ss_pred CC---------------CCHHHHHHhhcc---CCceEEEEEcCCCCCc-ccc---CHHHHHHHHHhcCCEEEEeCCCC-C
Q 013210 171 DI---------------SDHEMVNSAIVQ---GRTKVLYFESISNPTL-AVA---NIPELSRLAHDKGVTVVVDNTFS-P 227 (447)
Q Consensus 171 ~~---------------~d~~~l~~~i~~---~~t~lV~i~~~~NptG-~v~---~l~~I~~la~~~gi~livD~~~~-~ 227 (447)
.. .|+++|+++|+. ..+.++++++++|+.| .+. ++++|.++|++||+.+|+|+++. +
T Consensus 141 ~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~ 220 (456)
T d1c7ga_ 141 VRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVE 220 (456)
T ss_dssp BCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred cccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhc
Confidence 21 289999998842 3456899999999876 343 57788999999999999999972 1
Q ss_pred -C--------CC---CccC------CCCeEEEeCCCccccCCCCeeEEEEEc-ChHHHHHHHHHhhh--hhhhcCCCccH
Q 013210 228 -L--------VL---SPAR------LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQG--ALMLLGPTMNP 286 (447)
Q Consensus 228 -~--------~~---~~~~------~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~--~~~~~g~~~~~ 286 (447)
. .+ +..+ -.+|++++|++|.++.++ ||+++. ++++.++++..... .....|. +..
T Consensus 221 ~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~---GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~-~~~ 296 (456)
T d1c7ga_ 221 NAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI---GGFLCMNDEEMFSAAKELVVVYEGMPSYGG-LAG 296 (456)
T ss_dssp HHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS---CEEEEESCHHHHHHHHHHHHHHTCCTTTTT-CCH
T ss_pred chhhhcccccccCCCChhhhccccccccccEEEeccccccccc---eeEEEcCCHHHHHHHHHhccccCCCcccch-hhH
Confidence 0 01 1100 137999999999999764 588875 45677766543321 1111222 222
Q ss_pred HHHHHHHccCCc--HHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013210 287 KVAFELSERIPH--LGLRMKEHCHRALIFARRMKKLGLKVLYP 327 (447)
Q Consensus 287 ~~a~~~~~~~~~--l~~~~~~~~~~~~~l~~~L~~~~~~v~~p 327 (447)
..+.++...+.. ..+..++..++.++|.+.|++.+..+..|
T Consensus 297 ~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~g~~vv~p 339 (456)
T d1c7ga_ 297 RDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREAGVPIVEP 339 (456)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCBCSS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCCcccC
Confidence 222221111111 12344555677789999999987755544
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=1.8e-21 Score=191.41 Aligned_cols=189 Identities=10% Similarity=0.028 Sum_probs=134.6
Q ss_pred ccccCCHHHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHhCC--------CeEEEeCChHH----HHHHHHHHh
Q 013210 67 TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT--------EAAYCTASGMS----AISSVLMQL 134 (447)
Q Consensus 67 t~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~g~--------~~~~~tsggt~----A~~~al~~l 134 (447)
++.++.+.+..+.+... +...+.|+-.. -..+||+.+|+++.. +.++.+.+++. ++.+++..+
T Consensus 43 ~p~~~~V~~A~~~l~~~---~~~~~~Y~p~~--G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~ 117 (397)
T d3tata_ 43 IPQLQAVAEAEARLNAQ---PHGASLYLPME--GLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKR 117 (397)
T ss_dssp CCCCHHHHHHHHHHTTS---CCSSBCCCCTT--CCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhC---cccCCCCCCcc--cCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhh
Confidence 34445554433333221 23445566422 235799999998642 34665554444 345555566
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-------CHHHHHHhhc--cCCceEEEEEcCCCCCccccC-
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN- 204 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~- 204 (447)
+.+||.|++++|.|+.+...+. ..|.++..++.+ |.+++.+.+. .++++++++.+|+||||.+.+
T Consensus 118 ~~pgd~Vlv~~P~y~~y~~~~~-----~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~ 192 (397)
T d3tata_ 118 YFPESGVWVSDPTWENHVAIFA-----GAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTN 192 (397)
T ss_dssp HCSSCCCEECSSCCTTHHHHHH-----TTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCH
T ss_pred cCCCCcceecccCccccHHHHH-----HcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCH
Confidence 7899999999999999998883 367788877763 5666666542 356789999999999999986
Q ss_pred --HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-----------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHH
Q 013210 205 --IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------RLGADVVVHSISKFISGGADIIAGAVCGPANLV 266 (447)
Q Consensus 205 --l~~I~~la~~~gi~livD~~~~~~~~~~~-----------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~ 266 (447)
+++|+++|+++++++++|++|..+.++.. .....+++.|+||.++.+|+|+ ||++.+...+
T Consensus 193 ~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri-G~~~~~~~~~ 266 (397)
T d3tata_ 193 DQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERV-GGLSVMCEDA 266 (397)
T ss_dssp HHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCC-BCCEEECSST
T ss_pred HHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccc-cccccchhHH
Confidence 66889999999999999999988766421 1134689999999999999999 8887765443
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=3e-20 Score=182.32 Aligned_cols=243 Identities=13% Similarity=0.076 Sum_probs=152.9
Q ss_pred cccccCCH-HHHHHhhcCCCCCCCCCccccCCCCchHHHHHHHHHHHh----CC---CeEEEeCChHHH--HHHHHHHhc
Q 013210 66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----GT---EAAYCTASGMSA--ISSVLMQLC 135 (447)
Q Consensus 66 tt~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ia~l~----g~---~~~~~tsggt~A--~~~al~~l~ 135 (447)
.++++|.+ +++.+..+.. ..|.|+-.. -..+||+.+++++ +. ...+.|.+|+.+ +.+.+..+.
T Consensus 42 ~~~~~~~V~~A~~~~~~~~-----~~~~Y~p~~--G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 114 (394)
T d2ay1a_ 42 HTPIMRAVHAAEQRMLETE-----TTKTYAGLS--GEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA 114 (394)
T ss_dssp CCCCCHHHHHHHHHHHHHC-----CCCCCCCSS--CCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhCC-----CCCCCCCCC--CCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhc
Confidence 34555556 5555554432 135565432 2346888888774 21 234555555544 555556667
Q ss_pred CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-------CHHHHHHhhc--cCCceEEEEEcCCCCCccccC--
Q 013210 136 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN-- 204 (447)
Q Consensus 136 ~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~--~~~t~lV~i~~~~NptG~v~~-- 204 (447)
.+||.|++++|.|+.+...+. ..|.+++.++.. +.+++++... .++++++++++||||||.+.+
T Consensus 115 ~~gd~V~~p~p~~~~y~~~~~-----~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e 189 (394)
T d2ay1a_ 115 NPDLRVFVSDPTWPNHVSIMN-----FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLD 189 (394)
T ss_dssp CTTCCEEEEESCCHHHHHHHH-----HHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHH
T ss_pred CCceEEEEecccccchHHHHH-----HcCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHH
Confidence 899999999999999988874 256666655542 4455544331 456788888999999999986
Q ss_pred -HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-----------CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHH
Q 013210 205 -IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL 272 (447)
Q Consensus 205 -l~~I~~la~~~gi~livD~~~~~~~~~~~-----------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~ 272 (447)
+++|+++|++|++++|+|++|..+.++.. .....+++.|++|.++.+|.|+ ||++++....+.....
T Consensus 190 ~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~-G~~~~~~~~~~~~~~~ 268 (394)
T d2ay1a_ 190 QWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERT-GCLLALCADAATRELA 268 (394)
T ss_dssp HHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCE-EEEEEECSSHHHHHHH
T ss_pred HHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccc-cchhhchhHHHHHHHh
Confidence 67899999999999999999988876521 1134677889999999999998 8887765554433322
Q ss_pred hhh----hhhhcCCCccHH--HHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013210 273 HQG----ALMLLGPTMNPK--VAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLG 321 (447)
Q Consensus 273 ~~~----~~~~~g~~~~~~--~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~ 321 (447)
... ............ .+...... .+.+....+++.++++.+.+.|++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 330 (394)
T d2ay1a_ 269 QGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLS 330 (394)
T ss_dssp HHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 110 001122222222 22222211 11223344567788888888888764
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=8.6e-18 Score=159.63 Aligned_cols=286 Identities=11% Similarity=0.048 Sum_probs=174.9
Q ss_pred ccCCCCchHHHHHHHHHHHhCCCe-EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeC
Q 013210 93 YSRHFNPTVLNLSRQMAALEGTEA-AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 171 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~g~~~-~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 171 (447)
.+...++..+++|+.+|+++|.+. ++||+|||+||+.++..++..++.+++....|........... ..+..+..++
T Consensus 32 ~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 109 (345)
T d1v72a1 32 GPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEF--FSNGAKLMTV 109 (345)
T ss_dssp CSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHH--HTTSCEEEEC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHhcCCccccccccceeeechhhHHH--hcCccccccc
Confidence 334577899999999999999975 7899999999999999988888888888877665443321111 1344444443
Q ss_pred C-----CCHHHHHHhhccC-----Cce-EEEEEcCCCCCcccc---CHHHHHHHHHhcCCEEEEeCCCCCCC-----CCc
Q 013210 172 I-----SDHEMVNSAIVQG-----RTK-VLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLV-----LSP 232 (447)
Q Consensus 172 ~-----~d~~~l~~~i~~~-----~t~-lV~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~-----~~~ 232 (447)
. .+++.++..+... .+. .+....+.|+.+... +++++.++|++||+++|+|++++... .+.
T Consensus 110 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 189 (345)
T d1v72a1 110 DGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP 189 (345)
T ss_dssp CCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT
T ss_pred ccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCH
Confidence 3 3889999887321 122 334445566666654 46788889999999999999983211 111
Q ss_pred c----CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc--cCCcHHHHHHHH
Q 013210 233 A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEH 306 (447)
Q Consensus 233 ~----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~ 306 (447)
. ....+..+.+.+|..++.+ ++.+............... . ...+......++..... ..........+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~ 264 (345)
T d1v72a1 190 AEMTWKAGVDALSFGATKNGVLAA---EAIVLFNTSLATEMSYRRK-R-AGHLSSKMRFLSAQIDAYLTDDLWLRNARKA 264 (345)
T ss_dssp TTTTGGGTCCEEEECCGGGTCSSC---EEEEESSGGGHHHHHHHHH-H-TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred HHhhccccccccccCccccccccc---cccccchhhhhhhcccccc-c-cccccchhhHHhhhhHHHHHHhhhhhhccch
Confidence 1 1234555655555444332 2334444443333222211 1 12222233333322222 223334455556
Q ss_pred HHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCc
Q 013210 307 CHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 385 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~ 385 (447)
.++..++.+.+.+++. .+..|. .+.++.+.+++. +.++|...+ +.++.+
T Consensus 265 ~~~~~~~~~~l~~~~g~~~~~p~-------------------~~niv~~~~~~~-----~~~~L~~~g----i~v~~~-- 314 (345)
T d1v72a1 265 NAAAQRLAQGLEGLGGVEVLGGT-------------------EANILFCRLDSA-----MIDALLKAG----FGFYHD-- 314 (345)
T ss_dssp HHHHHHHHHHHTTCTTEEEESCC-------------------CSSEEEEEECHH-----HHHHHHHTT----CBCBCS--
T ss_pred hhHHHHHHHHHHhcCCcEeccCC-------------------CccEEEEEcCHH-----HHHHHHHcC----CCcccc--
Confidence 7777888888888765 555553 244888888632 334444422 333222
Q ss_pred cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 386 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 386 ~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...++.||||++ ..+++++||.+.++|++.
T Consensus 315 -----------------------~~~~~~lR~~~~-~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 315 -----------------------RWGPNVVRFVTS-FATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp -----------------------SSSTTEEEEECC-TTCCHHHHHHHHHHHHHT
T ss_pred -----------------------CCCCCEEEEECC-CCCCHHHHHHHHHHHHHh
Confidence 112578999999 999999999999998864
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.81 E-value=5.7e-18 Score=165.17 Aligned_cols=214 Identities=19% Similarity=0.222 Sum_probs=166.4
Q ss_pred CCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC--
Q 013210 97 FNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-- 173 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 173 (447)
..+.++++|+++|+++|.+.+++|+|||.|+.++++++ +++||+|+++..+|.++...+. ..|.++.++|.+
T Consensus 32 ~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~-----~~g~~p~~~d~~~~ 106 (384)
T d1b9ha_ 32 GGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQ-----RLGAVTVPVDVDAA 106 (384)
T ss_dssp TCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBCTT
T ss_pred CCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccccccc-----cccccccccccccc
Confidence 35789999999999999999999999999999999987 7899999999999999887773 268888888865
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCCcc---CCC-CeEEEeCC
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPA---RLG-ADVVVHSI 244 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~~~---~~g-~di~~~S~ 244 (447)
|++.+++.+ +++|++|++ .+..|...++++|.++|+++++++|.|++|+.. .++.. .+| ..+.+++.
T Consensus 107 ~~~~d~~~~~~~i-~~~tk~i~~---~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~ 182 (384)
T d1b9ha_ 107 TYNLDPEAVAAAV-TPRTKVIMP---VHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQN 182 (384)
T ss_dssp TCCBCHHHHHHHC-CTTEEEECC---BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCT
T ss_pred ccccchhhhcccc-ccccccccc---ccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecccc
Confidence 899999998 889999874 567788999999999999999999999999332 22221 122 34455556
Q ss_pred CccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhh-----------hhcC--CCccHHHHHHHHccCCcHHHHHHHHHHHH
Q 013210 245 SKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL-----------MLLG--PTMNPKVAFELSERIPHLGLRMKEHCHRA 310 (447)
Q Consensus 245 sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~-----------~~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~ 310 (447)
+|.++... ||+++. ++++.+.++..+.... ...| ..++...|+..+..++.+.+.+++.+++.
T Consensus 183 ~K~i~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~ 259 (384)
T d1b9ha_ 183 GKLMTAGE---GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERW 259 (384)
T ss_dssp TSSSCSSS---CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cccccccc---cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhh
Confidence 89987433 577654 5777777766543210 0112 22556667777777888888888889999
Q ss_pred HHHHHHHHhCCC
Q 013210 311 LIFARRMKKLGL 322 (447)
Q Consensus 311 ~~l~~~L~~~~~ 322 (447)
+++.+.|++.+.
T Consensus 260 ~~y~~~L~~~~~ 271 (384)
T d1b9ha_ 260 TLLSRLLGAIDG 271 (384)
T ss_dssp HHHHHHHHTSTT
T ss_pred hhhhhhhhcccc
Confidence 999999988654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.81 E-value=4.4e-19 Score=176.11 Aligned_cols=284 Identities=13% Similarity=0.099 Sum_probs=178.5
Q ss_pred HHHHHHhCCCe-EEEe-CChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC--------C
Q 013210 106 RQMAALEGTEA-AYCT-ASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--------S 173 (447)
Q Consensus 106 ~~ia~l~g~~~-~~~t-sggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~--------~ 173 (447)
..+++++|.+. ..++ .|+++++.++++++. .+++.|+++...|+++...+. ..|..+.+++. .
T Consensus 120 ~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~-----~~g~~~~~v~~~~~~~~~~~ 194 (434)
T d2z67a1 120 ESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVS-----FVGMNMRLVETVLDGDRVYV 194 (434)
T ss_dssp HHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEEETTEEEC
T ss_pred HHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHH-----HhCCcceEEEeecCCCccCC
Confidence 44667777654 4444 455556666676653 368899999999999988773 24666666542 2
Q ss_pred CHHHHHHhhcc----CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCC------CccCCCCeEEEe
Q 013210 174 DHEMVNSAIVQ----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVL------SPARLGADVVVH 242 (447)
Q Consensus 174 d~~~l~~~i~~----~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~------~~~~~g~di~~~ 242 (447)
|+++|++++++ .++.+|++++|++++|.+.|+++|+++|++||+++|+|++|+. +.+ .+...++|++++
T Consensus 195 d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~ 274 (434)
T d2z67a1 195 PVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVS 274 (434)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEE
T ss_pred CHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEE
Confidence 89999999842 4688899999999999999999999999999999999999943 221 245678999999
Q ss_pred CCCccccCCCCeeEEEE-EcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHh
Q 013210 243 SISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKK 319 (447)
Q Consensus 243 S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~ 319 (447)
|+||+++.+... |++ +.++.+++.+..... ..........++..+. ....+....++..++++++.+.|++
T Consensus 275 s~hK~l~~~~g~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~ 348 (434)
T d2z67a1 275 SSDKNLLTPIGG--GLVYSTDAEFIKEISLSYP----GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND 348 (434)
T ss_dssp EHHHHHCCCSSC--EEEEESCHHHHHHHHTTSC----SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccccCCCc--cccccCcHHHHHHHHhhcc----cccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 999988766442 444 556677766654332 1122222222233222 2234455666777788888888876
Q ss_pred C----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCccccccccccc
Q 013210 320 L----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 395 (447)
Q Consensus 320 ~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~ 395 (447)
. +..+..+. . ...+.+.+... ...+...|... | ++ |... ..+.
T Consensus 349 l~~~~g~~ll~~~---~----------------~~~~~~~~~~~--~~~l~~~L~~~---g---I~-g~~v---~~~l-- 395 (434)
T d2z67a1 349 LSKKTGGKFLDVE---S----------------PIASCISVNSD--PVEIAAKLYNL---R---VT-GPRG---IKKT-- 395 (434)
T ss_dssp HHHHSSCCBCCCC---C----------------SSEEEEECSSC--HHHHHHHHHHT---T---EE-SCEE---ECTT--
T ss_pred hhhhcCceecCCC---C----------------CceeeeecCCC--HHHHHHHHHHc---C---Ce-eeeh---hhhc--
Confidence 4 32332111 1 11444554421 33455555542 2 11 1000 0000
Q ss_pred cCCCCCHHHHHhcC-CCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 396 TSSELNAEEKALAG-ISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 396 ~~~~~~~~~~~~~g-~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...-....+ ...+.+|++++ ..+++++|+.|.++|+++
T Consensus 396 -----~~~g~~~~~~~~~~~l~~~~s-~~~T~edID~~i~~L~kI 434 (434)
T d2z67a1 396 -----DHFGNCYLGTYTHDYIVMNAA-IGVRTEDIVNSVSKLEKI 434 (434)
T ss_dssp -----CHHHHTCSSCCSCCEEEEECC-TTCCHHHHHHHHHHHHTC
T ss_pred -----cccCeeeecccCCCeEEEecC-CCCCHHHHHHHHHHHhcC
Confidence 000000011 13578999999 999999999999999875
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.9e-18 Score=169.30 Aligned_cols=250 Identities=16% Similarity=0.131 Sum_probs=170.0
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC----------CCCeEEEeCCCchhHHHHH-H---------h
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS----------SGGHVVAARTLYGGTHALL-T---------H 157 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~----------~gd~Vi~~~~~y~~~~~~~-~---------~ 157 (447)
+.....+++.++++.+.+.++|++||++|+..|++.... ...+|+.....|++..... . .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~ 161 (404)
T d2byla1 82 NNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDG 161 (404)
T ss_dssp ESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTT
T ss_pred cchHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccC
Confidence 455678889999999999999999999999999976421 1246777777776533222 1 1
Q ss_pred hcCcccCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013210 158 FFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-- 231 (447)
Q Consensus 158 ~~~~~~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-- 231 (447)
+.+. ...+..++.+|++++++++..+++.+|++|.+.+..|.+.+ +++|.++|++||+++|+||+++++...
T Consensus 162 ~~p~--~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~ 239 (404)
T d2byla1 162 FGPF--MPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR 239 (404)
T ss_dssp SCSC--CTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred CCCC--CCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc
Confidence 1121 22456678889999999996678899999999999998875 899999999999999999999766321
Q ss_pred ---cc--CCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHH
Q 013210 232 ---PA--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH 306 (447)
Q Consensus 232 ---~~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~ 306 (447)
.. ....|+++ ++|.+++....+ |+++.++++.+.+..... ..+..|++++..++.+.+..++. ....++.
T Consensus 240 ~~a~~~~gv~PDi~~--~gK~l~gG~~p~-~av~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~a~L~~i~~-~~l~~~~ 314 (404)
T d2byla1 240 WLAVDYENVRPDIVL--LGKALSGGLYPV-SAVLCDDDIMLTIKPGEH-FSTYGGNPLGCRVAIAALEVLEE-ENLAENA 314 (404)
T ss_dssp SSGGGGGTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHTTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-TTHHHHH
T ss_pred cchhhhcCCCCCEEE--ECchhhCCCccc-eeeeechhhhhccCCCCC-CcCCCcCHHHHHHHHHHHHHHHh-cCchhhh
Confidence 11 22357775 899999655677 888889888776654332 22344545545444444443321 1134455
Q ss_pred HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhc
Q 013210 307 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQN 371 (447)
Q Consensus 307 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~l~~~l~~ 371 (447)
.+..+++.+.|+++...... +..|.|.+..|.+.+ ...+..+..++..
T Consensus 315 ~~~g~~l~~~l~~l~~~~i~-----------------~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~ 364 (404)
T d2byla1 315 DKLGIILRNELMKLPSDVVT-----------------AVRGKGLLNAIVIKETKDWDAWKVCLRLRD 364 (404)
T ss_dssp HHHHHHHHHHHHTSCTTTEE-----------------EEEEETTEEEEEECCCSSCCHHHHHHHHHH
T ss_pred hHhhHHHHHHHHhhccccce-----------------eeeecccEEEEEEecCCchhHHHHHHHHHh
Confidence 66677788888765321110 122678899999863 2235567777665
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=2.7e-18 Score=164.99 Aligned_cols=256 Identities=15% Similarity=0.123 Sum_probs=167.1
Q ss_pred CCCchHHHHHHHHHHHhCCCe--EEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC
Q 013210 96 HFNPTVLNLSRQMAALEGTEA--AYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS 173 (447)
Q Consensus 96 ~~~~~~~~l~~~ia~l~g~~~--~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~ 173 (447)
......+++++.++++++.+. +++++|||.|+++++..++.+|++|++....+.+.... ....+ .+.++..++..
T Consensus 30 ~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~--~~a~~-~~~~~~~~~~~ 106 (348)
T d1iuga_ 30 AAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFY--EIALE-AGLVVERLDYP 106 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH--HHHHH-TTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHHHH--HHHHh-cCccccccccc
Confidence 344567889999999998754 78899999999999999999999998887775443322 23333 56555554432
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcC--CEEEEeCCC--CCCCCCccCCCCeEEEeCCCcc
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG--VTVVVDNTF--SPLVLSPARLGADVVVHSISKF 247 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~g--i~livD~~~--~~~~~~~~~~g~di~~~S~sK~ 247 (447)
+...++... ..++++|++.+..+.+|.+.|+++|.++|++++ .++++|.++ +..++++..+++|+++.|.+|+
T Consensus 107 ~g~~~~~~~~~-~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~ 185 (348)
T d1iuga_ 107 YGDTPRPEDVA-KEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKG 185 (348)
T ss_dssp TTCCCCTTTSC-CSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSST
T ss_pred CCCcccccccc-ccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccc
Confidence 111122222 567899999999999999999999999999874 899999998 4566788888999999999999
Q ss_pred c-cCCCCeeEEEEEcChHHHHHHH-------------HHhhhhhhhcCCCccHHH--HH-HHHcc-CCcHHHHHHHHHHH
Q 013210 248 I-SGGADIIAGAVCGPANLVNSMM-------------DLHQGALMLLGPTMNPKV--AF-ELSER-IPHLGLRMKEHCHR 309 (447)
Q Consensus 248 ~-g~~g~~igG~l~~~~~~~~~l~-------------~~~~~~~~~~g~~~~~~~--a~-~~~~~-~~~l~~~~~~~~~~ 309 (447)
+ |++| + |+++.+++.++++. ....+. ...+++... +. .+++. .+...+..++.+..
T Consensus 186 l~gppG--~-~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~---~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~ 259 (348)
T d1iuga_ 186 LMCPPG--L-GFVALSPRALERLKPRGYYLDLARELKAQKEGE---SAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQ 259 (348)
T ss_dssp TCCCSC--E-EEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTC---CSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHH
T ss_pred eecCCc--e-eeeeechHHHhhhcccccccchhhhhhhhccCc---ccccccchHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9 6666 4 88888887766431 111111 112222221 11 22221 22333344444444
Q ss_pred HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013210 310 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 383 (447)
Q Consensus 310 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G 383 (447)
...+...+.+.++... |.. .. ..+++|.+++..+...+.+.|... | +.++.|
T Consensus 260 ~~~~~~~~~~~gl~~~-~~~-~s----------------~~v~~~~~P~g~~~~~~~~~l~~~---g-i~i~~G 311 (348)
T d1iuga_ 260 NALLYGVGEEGGLRPV-PKR-FS----------------PAVAAFYLPEGVPYARVKEAFAQR---G-AVIAGG 311 (348)
T ss_dssp HHHHHHHHHHTTCEES-CSS-BC----------------TTCEEEECCTTCCHHHHHHHHHTT---T-EECEEC
T ss_pred HHHHhhhhhhhhhccC-hhh-cC----------------CeEEEEECCCCCCHHHHHHHHHHC---C-eEEEcC
Confidence 4555555566666543 321 11 238899997443356777777753 4 455544
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=1.1e-17 Score=166.52 Aligned_cols=205 Identities=12% Similarity=0.108 Sum_probs=137.3
Q ss_pred HHHHHHHHhCCC---eEEEeCChHHHHHHH-HHHh---cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC---C
Q 013210 104 LSRQMAALEGTE---AAYCTASGMSAISSV-LMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S 173 (447)
Q Consensus 104 l~~~ia~l~g~~---~~~~tsggt~A~~~a-l~~l---~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~---~ 173 (447)
+.+.+++++|.+ ..++|++|+++..++ +.++ ..+++.||++...|.++...+. ..|.+..+|+. +
T Consensus 99 ~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~-----~~g~~~~~v~~~~~~ 173 (445)
T d3bc8a1 99 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV-----TAGFEPVVIENVLEG 173 (445)
T ss_dssp HHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEEET
T ss_pred HHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHH-----HcCCeeEEEEeeccC
Confidence 345566777753 478888888665544 4433 3457899999999999988873 35777666653 1
Q ss_pred -----CHHHHHHhhcc---CCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCC--c----cCC-CC
Q 013210 174 -----DHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLS--P----ARL-GA 237 (447)
Q Consensus 174 -----d~~~l~~~i~~---~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~--~----~~~-g~ 237 (447)
|+++|++++++ +++.+|++++++|++|.+.|+++|+++|++||+++|+|++++.. .+. . ..+ ++
T Consensus 174 ~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~v 253 (445)
T d3bc8a1 174 DELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRI 253 (445)
T ss_dssp TEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCC
T ss_pred cccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCc
Confidence 89999998842 46889999999999999999999999999999999999998432 211 1 122 58
Q ss_pred eEEEeCCCccccCCCCeeEEEE-EcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHcc--CCcHHHHHHHHHHHHHHHH
Q 013210 238 DVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFA 314 (447)
Q Consensus 238 di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~ 314 (447)
|+++.|+||+++++.. ||++ +.+..+.+.+..... ..+.......++..+.. ........++...+++++.
T Consensus 254 d~~~~s~hK~~~~p~g--~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 327 (445)
T d3bc8a1 254 DAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYP----GRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLS 327 (445)
T ss_dssp CEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSC----SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecCccccccCCC--CceeeeCChHHHHHHHHHHh----hcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHH
Confidence 9999999998776554 2555 445666666654333 22222222333332222 1223444555566666777
Q ss_pred HHHHh
Q 013210 315 RRMKK 319 (447)
Q Consensus 315 ~~L~~ 319 (447)
+.|++
T Consensus 328 ~~L~~ 332 (445)
T d3bc8a1 328 TQLKK 332 (445)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.77 E-value=2.6e-17 Score=161.39 Aligned_cols=251 Identities=14% Similarity=0.118 Sum_probs=156.3
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcC----------CCCeEEEeCCCchhHHHHHHhhcC----c-c
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCS----------SGGHVVAARTLYGGTHALLTHFFP----R-A 162 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~----------~gd~Vi~~~~~y~~~~~~~~~~~~----~-~ 162 (447)
......+++.++.+.+.+.+.|+.||++|+..+++.... ....++.....|++.......... + .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~ 159 (404)
T d1z7da1 80 SVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSN 159 (404)
T ss_dssp EHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------
T ss_pred hHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccC
Confidence 445678888899999999999999999999999875421 124688888888765443311100 0 0
Q ss_pred ---cCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC-----
Q 013210 163 ---CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL----- 230 (447)
Q Consensus 163 ---~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~----- 230 (447)
.-..+..++.++.+.++..+..+++.+|++|.++...|.+.+ +++|.++|++||+++|+||+++++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~ 239 (404)
T d1z7da1 160 FGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL 239 (404)
T ss_dssp ------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred CCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccc
Confidence 012344566678999998885667899999999999998876 99999999999999999999976632
Q ss_pred --CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccC--CcHHHHHHH-
Q 013210 231 --SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKE- 305 (447)
Q Consensus 231 --~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~~~- 305 (447)
.-.....|+++ ++|.+++.+..+ |+++.++++.+.+..... ..++.|++++..++...+..+ +.+.++..+
T Consensus 240 ~~e~~gv~PDivt--~gK~l~gG~~p~-~~v~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~ 315 (404)
T d1z7da1 240 CVHHYNVKPDVIL--LGKALSGGHYPI-SAVLANDDIMLVIKPGEH-GSTYGGNPLAASICVEALNVLINEKLCENAEKL 315 (404)
T ss_dssp GGGGGTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHTTCCTTCC-CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cccccCCCCCEEE--EcccccCCCCCc-ccccchHHHHccCCCCCc-CcCCCCCcchhhhhhhhhhhhhcchhhhhhccc
Confidence 11223467775 899999655666 889999998776654433 223444444444444433322 222222222
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhc
Q 013210 306 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQN 371 (447)
Q Consensus 306 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~l~~~l~~ 371 (447)
-....+.+.+.+++++... +..|.|.++.|.+.+. .....+..++..
T Consensus 316 ~~~~~~~l~~~~~~~~~v~-------------------~vrg~Gl~~~i~~~~~~~~~~~~~~~l~~ 363 (404)
T d1z7da1 316 GGPFLENLKRELKDSKIVR-------------------DVRGKGLLCAIEFKNELVNVLDICLKLKE 363 (404)
T ss_dssp HHHHHHHHHHHHTTCTTEE-------------------EEEEETTEEEEEECTTTCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCCeE-------------------EEEeeCcEEEEEEcCCcccHHHHHHHHHh
Confidence 2333344444444444311 1126788999999843 224455566554
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.4e-17 Score=165.12 Aligned_cols=296 Identities=13% Similarity=0.014 Sum_probs=186.6
Q ss_pred CchHHHHHH----HHHHHhCCCe-------EEEeCChHHHHHHHHHHhcC------------CCCeEEEeCCCchhHHHH
Q 013210 98 NPTVLNLSR----QMAALEGTEA-------AYCTASGMSAISSVLMQLCS------------SGGHVVAARTLYGGTHAL 154 (447)
Q Consensus 98 ~~~~~~l~~----~ia~l~g~~~-------~~~tsggt~A~~~al~~l~~------------~gd~Vi~~~~~y~~~~~~ 154 (447)
.|...++|+ .+|+++|.+. -.+|+|||+|+.+++.+... ....++++...|.++...
T Consensus 88 ~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Ka 167 (450)
T d1pmma_ 88 YPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKF 167 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHH
Confidence 344444444 6788888522 69999999999999876421 123577888888877776
Q ss_pred HHhhcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHH------HhcCCEEEEe
Q 013210 155 LTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA------HDKGVTVVVD 222 (447)
Q Consensus 155 ~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la------~~~gi~livD 222 (447)
+. ..|++++.++.+ |+++|++++ +++|.+|++..+++.||.+.|+++|.++| +++|+++|+|
T Consensus 168 a~-----~~gi~~~~v~~~~~~~~~d~~~L~~~i-~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVD 241 (450)
T d1pmma_ 168 AR-----YWDVELREIPMRPGQLFMDPKRMIEAC-DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHID 241 (450)
T ss_dssp HH-----HTTCEEEECCCBTTBCSCCHHHHHHHC-CTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred HH-----HcCCCceEeeecCCCCcCcHHHHHHHh-hhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEee
Confidence 62 368888887754 899999999 88999999999999999999998887775 5689999999
Q ss_pred CCCCCCC--CCcc-------CCCCeEEEeCCCccccCCCCeeEEEEEcC-hHHHHHHHHHh-------hhhhhhcCCCc-
Q 013210 223 NTFSPLV--LSPA-------RLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLH-------QGALMLLGPTM- 284 (447)
Q Consensus 223 ~~~~~~~--~~~~-------~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~-------~~~~~~~g~~~- 284 (447)
++++++. +... -.++|.++.|+||++++|-. + |+++.+ ++......... .......++..
T Consensus 242 AA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g-~-g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~ 319 (450)
T d1pmma_ 242 AASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLG-C-GWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPA 319 (450)
T ss_dssp CTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS-C-EEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBS
T ss_pred hhhccceeeeechhhhhhhcccceeEeecChhhccCCCCC-e-eEEEecChhhhhhhcccccCcCCCCcCCCcccCccch
Confidence 9995432 2111 12699999999998875533 3 666554 44322111100 00001122222
Q ss_pred cH-HHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-
Q 013210 285 NP-KVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE- 359 (447)
Q Consensus 285 ~~-~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~- 359 (447)
.. ...+..++ +.+.+.+..++..+++++|.+.|++.+. ++..|+.+. ..-++++|.+.+.
T Consensus 320 ~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~---------------~~l~~V~Fr~~~~~ 384 (450)
T d1pmma_ 320 GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPD---------------EGIPAVCFKLKDGE 384 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTT---------------TBSSEEEEEECTTC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCC---------------CceEEEEEecCCcc
Confidence 12 22333332 3344677888889999999999999875 666554211 1223899998632
Q ss_pred ---HHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH----
Q 013210 360 ---EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF---- 432 (447)
Q Consensus 360 ---~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l---- 432 (447)
-....+.+.|.. +|. .++.. ..|.. ......+|+++. ...+.+.++.|
T Consensus 385 ~~~~~~~~l~~~L~~---~Gw-~v~~~------~~p~~--------------~~~~~~lRvvv~-~~~t~e~~d~lv~dl 439 (450)
T d1pmma_ 385 DPGYTLYDLSERLRL---RGW-QVPAF------TLGGE--------------ATDIVVMRIMCR-RGFEMDFAELLLEDY 439 (450)
T ss_dssp CCSSCHHHHHHHHHT---TTC-BCCEE------ECCTT--------------CTTCEEEEEECC-TTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH---cCC-eeecc------CcCCC--------------cCCcEEEEEEcc-CCCCHHHHHHHHHHH
Confidence 124566777775 342 22211 00110 112357999999 76655555554
Q ss_pred HHHHHHhhh
Q 013210 433 EKALSRMQD 441 (447)
Q Consensus 433 ~~al~~~~~ 441 (447)
.++++.+++
T Consensus 440 ~~~v~~l~~ 448 (450)
T d1pmma_ 440 KASLKYLSD 448 (450)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 445555443
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.77 E-value=2.5e-17 Score=155.03 Aligned_cols=286 Identities=13% Similarity=0.019 Sum_probs=171.5
Q ss_pred CCCCchHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCC
Q 013210 95 RHFNPTVLNLSRQMAALEGTE--AAYCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 172 (447)
Q Consensus 95 r~~~~~~~~l~~~ia~l~g~~--~~~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 172 (447)
+..++..+++|+++|+++|++ .++||+|||+||+.++..+..+++.++.....|.+.+........ ........+.
T Consensus 31 y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 108 (340)
T d1svva_ 31 YGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEAT--GHKVVTAPCP 108 (340)
T ss_dssp TTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHT--TCCEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeeccccccc--ceeeeecccc
Confidence 345778899999999999975 599999999999999999999999999999887766433211111 1222222221
Q ss_pred ---CCHHHHHHhhc-----cCCceEEEEEcCCCCCccccC---HHHHHHHHHhcCCEEEEeCCCCC--CCCCccCC----
Q 013210 173 ---SDHEMVNSAIV-----QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSP--LVLSPARL---- 235 (447)
Q Consensus 173 ---~d~~~l~~~i~-----~~~t~lV~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~--~~~~~~~~---- 235 (447)
.+.+....+.. ...+..+++...+|+.|.+.+ +..+.+.|+++|+++++|+++.. ........
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~ 188 (340)
T d1svva_ 109 DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLAD 188 (340)
T ss_dssp TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHH
T ss_pred cccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeeccccccccccc
Confidence 12332222221 122345555555555666654 56778889999999999999822 11111111
Q ss_pred ---CCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHH--HHHHHHccCCcHHHHHHHHHHHH
Q 013210 236 ---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK--VAFELSERIPHLGLRMKEHCHRA 310 (447)
Q Consensus 236 ---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~--~a~~~~~~~~~l~~~~~~~~~~~ 310 (447)
..++...+..|..+..+ . ++.................. ......... ++..............++...++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~ 263 (340)
T d1svva_ 189 IARLTDMFYIGATKAGGMFG--E-ALIILNDALKPNARHLIKQR--GALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMA 263 (340)
T ss_dssp HHHHCSEEEEECTTTTCSSC--E-EEEECSGGGCTTHHHHHHHT--TCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred ccccceeeecCCcccccccc--c-cccccchhhhhhhhhhcccc--cCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 24566666777666543 2 55555544433333222211 122222222 22223333333455666778888
Q ss_pred HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccc
Q 013210 311 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 311 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
.++.+.|+..+..+..|. .+.++.+.+++ +.+.++.+.+... + +.+.
T Consensus 264 ~~~~~~l~~~g~~~~~p~-------------------~~~~v~~~~~~-~~~~~l~~~~~~~---~-~~~~--------- 310 (340)
T d1svva_ 264 AILKAGLEACGIRLAWPS-------------------ASNQLFPILEN-TMIAELNNDFDMY---T-VEPL--------- 310 (340)
T ss_dssp HHHHHHHHHTTCCBSSCC-------------------SSSEECBEEEH-HHHHHHTTTEECE---E-EEEE---------
T ss_pred hhhHHHHhcCCCeeecCC-------------------CceEEEEeCCH-HHHHHHHHhhhhh---c-cccc---------
Confidence 899999999888776554 23477777753 3344444433321 1 0000
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...++.||||++ ..+++++||++.++|+++
T Consensus 311 ------------------~~~~~~vR~s~~-~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 311 ------------------KDGTCIMRLCTS-WATEEKECHRFVEVLKRL 340 (340)
T ss_dssp ------------------TTTEEEEEEECC-TTCCHHHHHHHHHHHHHC
T ss_pred ------------------CCCCcEEEEECC-CCCCHHHHHHHHHHHhcC
Confidence 012478999999 999999999999999875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=1.5e-17 Score=161.99 Aligned_cols=282 Identities=14% Similarity=0.182 Sum_probs=182.4
Q ss_pred CCchHHHHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHH----------hhcCcc
Q 013210 97 FNPTVLNLSRQMAALEGT--EAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLT----------HFFPRA 162 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g~--~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~----------~~~~~~ 162 (447)
.++...++.+.+.+.... +.+.|++||+||+..|++... ...++|+.....||+...... .+.+.
T Consensus 77 ~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~- 155 (387)
T d1vefa1 77 PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL- 155 (387)
T ss_dssp CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC-
T ss_pred CCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCC-
Confidence 345556666666666544 459999999999999998642 234688888888877543321 12222
Q ss_pred cCeeEEEeCCCCHHHHHHhhccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc------
Q 013210 163 CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP------ 232 (447)
Q Consensus 163 ~g~~~~~v~~~d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~------ 232 (447)
...+.+++.+|++.|++.+ .+++.+|++|.+....|.+.+ +++|.++|++||+++|+||+++++....
T Consensus 156 -~~~~~~~p~~d~~~l~~~~-~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~ 233 (387)
T d1vefa1 156 -VEPVEFIPYNDVEALKRAV-DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFE 233 (387)
T ss_dssp -SSCEEEECTTCHHHHHHHC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHH
T ss_pred -CCCceEeCCCCHHHHHHhc-CCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccc
Confidence 2356678888999999999 788999999999888898766 8999999999999999999997663211
Q ss_pred -cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 233 -ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 233 -~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
.....|+++ ++|.+++ |..+ +.++..+++++.+..... ..+..|++.+..++.+.+..+++ ....++..+..+
T Consensus 234 ~~~v~PDi~~--~gK~l~g-G~~~-~~~~~~~~~~~~~~~~~~-g~T~~gnPla~aaa~a~L~~l~~-~~~~~~v~~~g~ 307 (387)
T d1vefa1 234 HFGIVPDILT--LAKALGG-GVPL-GVAVMREEVARSMPKGGH-GTTFGGNPLAMAAGVAAIRYLER-TRLWERAAELGP 307 (387)
T ss_dssp HHTCCCSEEE--ECGGGGT-TSSC-EEEEEEHHHHHTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-HTTHHHHHHHHH
T ss_pred cCCcCCceee--ecccCCC-Cccc-cccccceeeeeccccCCc-cccCCCCcchhhhcccchhhccc-ccccchHhhhhH
Confidence 123457777 8899984 5667 666777777665543322 22344444444444443333321 224456677778
Q ss_pred HHHHHHHhCCCe-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccCcccccc
Q 013210 312 IFARRMKKLGLK-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS 390 (447)
Q Consensus 312 ~l~~~L~~~~~~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~ 390 (447)
++.+.|++...+ +. +..|.|.++.|++.+.. ...+...+.. .|++....|
T Consensus 308 ~l~~~L~~l~~~~v~------------------~vrg~Gl~~~ie~~~~~-~~~~~~~~~~---~g~l~~~~g------- 358 (387)
T d1vefa1 308 WFMEKLRAIPSPKIR------------------EVRGMGLMVGLELKEKA-APYIARLEKE---HRVLALQAG------- 358 (387)
T ss_dssp HHHHHHHTSCCTTEE------------------EEEEETTEEEEEESSCS-HHHHHHHHHH---HCEECEESS-------
T ss_pred HHHHHHHhcCCCceE------------------EEeecceEEEEEEeCCc-hHHHHHHHHH---CCCeEEecC-------
Confidence 888888765321 11 11267889999997433 2333333332 222222222
Q ss_pred ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013210 391 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 438 (447)
Q Consensus 391 ~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~ 438 (447)
.+.||+++. .-.+++.++.+.+++++
T Consensus 359 ---------------------~~~ir~~Pp-l~it~~~ld~~~~~i~~ 384 (387)
T d1vefa1 359 ---------------------PTVIRFLPP-LVIEKEDLERVVEAVRA 384 (387)
T ss_dssp ---------------------TTEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred ---------------------CCEEEEECC-ccCCHHHHHHHHHHHHH
Confidence 356888877 66666667666666654
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.76 E-value=5.1e-17 Score=157.65 Aligned_cols=213 Identities=16% Similarity=0.158 Sum_probs=163.7
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCC--CeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSG--GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~g--d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~- 173 (447)
.+.++++|+++++++|.+.+++|+|||.|+.++++++ ..+| ++|+++..+|.++...+. ..|.+++++|.+
T Consensus 30 G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~-----~~G~~pv~vDi~~ 104 (371)
T d2fnua1 30 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLL-----ESGYTPVFAGIKN 104 (371)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHH-----HTTCEEEECCBCT
T ss_pred CHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeee-----ccCcccccccccc
Confidence 4788999999999999999999999999999999987 3444 489999999998887763 379999999876
Q ss_pred ----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCCccC--CCCeEEEeCC--
Q 013210 174 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPAR--LGADVVVHSI-- 244 (447)
Q Consensus 174 ----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~~~~--~g~di~~~S~-- 244 (447)
+.+++++.+ +++|++|++. +..|...++++|.++|+++|+.+|.|++|+. ..+.... ..-|+.++||
T Consensus 105 ~~~~~~~~~~~~~-~~~t~avi~v---h~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~ 180 (371)
T d2fnua1 105 DGNIDELALEKLI-NERTKAIVSV---DYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHA 180 (371)
T ss_dssp TSSBCGGGSGGGC-CTTEEEEEEE---CGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred cccccchhhhhhc-cchhhccccc---cccccccccccccccccccchhhccchhhccCceeccccCCcccccccccccc
Confidence 556777777 7899999865 4579999999999999999999999999933 2222211 1235555555
Q ss_pred CccccCCCCeeEEEEEc-ChHHHHHHHHHhhhhhh------------hcCCCccHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013210 245 SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM------------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL 311 (447)
Q Consensus 245 sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~------------~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~ 311 (447)
+|.+...+ ||+++. ++++.++++..+..+.. .....++...|+..+..++.+.+.+++.++++.
T Consensus 181 ~K~l~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~ 257 (371)
T d2fnua1 181 IKPITTAE---GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAAL 257 (371)
T ss_dssp TSSSCCSS---CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cccccccc---ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhh
Confidence 89998654 477755 67888888776542210 112235566677777788888888888888889
Q ss_pred HHHHHHHhCCC
Q 013210 312 IFARRMKKLGL 322 (447)
Q Consensus 312 ~l~~~L~~~~~ 322 (447)
++.+.|.+.+.
T Consensus 258 ~y~~~l~~~~~ 268 (371)
T d2fnua1 258 TYDRIFKDNPY 268 (371)
T ss_dssp HHHHHHTTCSS
T ss_pred hhccccccccc
Confidence 99999987765
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.76 E-value=3.8e-17 Score=158.72 Aligned_cols=211 Identities=12% Similarity=0.085 Sum_probs=160.9
Q ss_pred CchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC---
Q 013210 98 NPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--- 173 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~--- 173 (447)
.+.++++|+.+++++|.+.+++++|||.|+.++++++ +++||+|+++..+|.++...+. ..|.+++++|.+
T Consensus 20 G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~-----~~g~~pv~~Di~~~~ 94 (374)
T d1o69a_ 20 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPIC-----YLKAKPVFIDCDETY 94 (374)
T ss_dssp THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHH-----HTTCEEEEECBCTTS
T ss_pred CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHh-----hccceeEeccccccc
Confidence 5778999999999999999999999999999999998 7889999999999999887773 368999999876
Q ss_pred ---CHH--HHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCCccCC--CCeEEEeCCC
Q 013210 174 ---DHE--MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARL--GADVVVHSIS 245 (447)
Q Consensus 174 ---d~~--~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~~~~~--g~di~~~S~s 245 (447)
+.+ ++...+ ..+|++|++.+ ..|...++++|.++|+++|++||.|++|+. ..+..... -.|+.++||+
T Consensus 95 ~~~~~~~~~~~~~~-~~~~~aii~~~---~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~ 170 (374)
T d1o69a_ 95 NIDVDLLKLAIKEC-EKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYN 170 (374)
T ss_dssp SBCHHHHHHHHHHC-SSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECC
T ss_pred ccccccccccchhc-ccccccccccc---cccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEecc
Confidence 122 233444 67788888644 468899999999999999999999999933 22222222 2488888885
Q ss_pred --ccccCCCCeeEEEE-EcChHHHHHHHHHhhhhhh--------hcC--CCccHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013210 246 --KFISGGADIIAGAV-CGPANLVNSMMDLHQGALM--------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALI 312 (447)
Q Consensus 246 --K~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~--------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~ 312 (447)
|.++..| ||++ ..++++++.++.++..... ..| ..++...|+.....++.+...+++.++++++
T Consensus 171 ~~K~l~tge---GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~ 247 (374)
T d1o69a_ 171 GNKIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEW 247 (374)
T ss_dssp TTSSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred Ccccccccc---ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHH
Confidence 9998555 3555 5578888888766542110 112 2356667777777888888888888888888
Q ss_pred HHHHHHhC
Q 013210 313 FARRMKKL 320 (447)
Q Consensus 313 l~~~L~~~ 320 (447)
+.+.|.+.
T Consensus 248 y~~~L~~~ 255 (374)
T d1o69a_ 248 YKEFLGEY 255 (374)
T ss_dssp HHHHHTTT
T ss_pred HHhhcccc
Confidence 88888764
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=5.8e-18 Score=169.54 Aligned_cols=225 Identities=13% Similarity=0.048 Sum_probs=146.6
Q ss_pred ccccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCC---------eEEEeCCCchhHHHHHHhhcCc
Q 013210 91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSGG---------HVVAARTLYGGTHALLTHFFPR 161 (447)
Q Consensus 91 ~~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~gd---------~Vi~~~~~y~~~~~~~~~~~~~ 161 (447)
..|+ .++++.+||+++++++|.+.+++++||++|+..++++++++|+ .++.+...|..+.....
T Consensus 68 ~~Y~--~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~----- 140 (467)
T d2v1pa1 68 EAFS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQ----- 140 (467)
T ss_dssp CCSS--SCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHH-----
T ss_pred hhhc--CCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHH-----
Confidence 4576 4789999999999999999999999999999999998876543 24444444444433331
Q ss_pred ccCeeEEEeCCC---------------CHHHHHHhhcc---CCceEEEEEcCCCCCccc-c---CHHHHHHHHHhcCCEE
Q 013210 162 ACNITTTFVDIS---------------DHEMVNSAIVQ---GRTKVLYFESISNPTLAV-A---NIPELSRLAHDKGVTV 219 (447)
Q Consensus 162 ~~g~~~~~v~~~---------------d~~~l~~~i~~---~~t~lV~i~~~~NptG~v-~---~l~~I~~la~~~gi~l 219 (447)
..|..+..++.+ |+++|++.++. +.+++|+++.++|..|.. . ++++|.++|++||+++
T Consensus 141 ~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l 220 (467)
T d2v1pa1 141 INGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPV 220 (467)
T ss_dssp HTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCE
T ss_pred HcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEE
Confidence 256676665432 78899988732 357889999998877543 3 5789999999999999
Q ss_pred EEeCCCC-CC---------CC---Ccc------CCCCeEEEeCCCccccCCCCeeEEEEEcChHH-HHHHHHHhhhhhh-
Q 013210 220 VVDNTFS-PL---------VL---SPA------RLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALM- 278 (447)
Q Consensus 220 ivD~~~~-~~---------~~---~~~------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~- 278 (447)
|+|+++. +. .+ .+. -..+|++++|.+|.++++. ||+++.+++. ....+..+.....
T Consensus 221 ~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~---gg~i~~~~~~~~~~~~~~~~~~~~~ 297 (467)
T d2v1pa1 221 VMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQ 297 (467)
T ss_dssp EEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHT
T ss_pred EEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC---ceeEEecchhhhhHHHhhccccccc
Confidence 9999972 11 00 110 0137999999999998764 5888776543 3333222221111
Q ss_pred ---h--cCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013210 279 ---L--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL 325 (447)
Q Consensus 279 ---~--~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~ 325 (447)
. .+.......+...........+..++..++.++|.+.|++.+..+.
T Consensus 298 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~ 349 (467)
T d2v1pa1 298 EGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ 349 (467)
T ss_dssp TSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 1 1122222222222222222234566677888999999998776443
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.75 E-value=1.8e-16 Score=158.05 Aligned_cols=291 Identities=11% Similarity=0.093 Sum_probs=187.0
Q ss_pred CchHHHHHH----HHHHHhCCC-----------eEEEeCChHHHHHHHHHHhcC----------CC---------CeEEE
Q 013210 98 NPTVLNLSR----QMAALEGTE-----------AAYCTASGMSAISSVLMQLCS----------SG---------GHVVA 143 (447)
Q Consensus 98 ~~~~~~l~~----~ia~l~g~~-----------~~~~tsggt~A~~~al~~l~~----------~g---------d~Vi~ 143 (447)
.|...++|+ .+++++|-+ ..++|+||++||..++.+... .| -.|++
T Consensus 108 sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~ 187 (476)
T d1js3a_ 108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA 187 (476)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEe
Confidence 455455555 456666653 268999999999999865321 11 14778
Q ss_pred eCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccC-----CceEEEEEcCCCCCccccCHHHHHHHHH
Q 013210 144 ARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAH 213 (447)
Q Consensus 144 ~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~-----~t~lV~i~~~~NptG~v~~l~~I~~la~ 213 (447)
++..|.++...+. ..|+.+..++.+ |+++|+++|++. .+-+|+....++.+|.+.|+++|+++|+
T Consensus 188 s~~~H~Si~ka~~-----~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~ 262 (476)
T d1js3a_ 188 SDQAHSSVERAGL-----IGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH 262 (476)
T ss_dssp ETTCCHHHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred cccccHHHHHHHH-----hcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHH
Confidence 9999998887773 356667777765 899999988321 2356777888999999999999999999
Q ss_pred hcCCEEEEeCCCCCCC-CCcc------CC-CCeEEEeCCCccccCCCCeeEEEE-EcChHHHHHH--------HHHhhh-
Q 013210 214 DKGVTVVVDNTFSPLV-LSPA------RL-GADVVVHSISKFISGGADIIAGAV-CGPANLVNSM--------MDLHQG- 275 (447)
Q Consensus 214 ~~gi~livD~~~~~~~-~~~~------~~-g~di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l--------~~~~~~- 275 (447)
+||+++|+|++|+++. ..+. .+ .+|.++.++||+++.|... |++ +.++...... .....+
T Consensus 263 ~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~--g~~l~r~~~~~~~~~~~~~~~~~~~~~~~ 340 (476)
T d1js3a_ 263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC--SAMWVKRRTDLTGAFKLDPVYLKHSHQGS 340 (476)
T ss_dssp HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSC--EEEEESCHHHHHGGGC------------C
T ss_pred hcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcc--eeecccchHHHHHHHhcChhhhccccccc
Confidence 9999999999995543 2111 11 5899999999999988763 555 5444433211 100000
Q ss_pred --------hhhhcCCCccHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhcc
Q 013210 276 --------ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANK 344 (447)
Q Consensus 276 --------~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~ 344 (447)
.....+-.......|..++ +.+.+.+.+++..++++++.+.|++.+. ++..|.
T Consensus 341 ~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p---------------- 404 (476)
T d1js3a_ 341 GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV---------------- 404 (476)
T ss_dssp CSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC----------------
T ss_pred cccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCC----------------
Confidence 0001111222334444443 3345777888889999999999999865 665543
Q ss_pred CCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013210 345 EYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 423 (447)
Q Consensus 345 ~~g~g~~~~~~l~~-~~~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~ 423 (447)
.-++++|.+.+ ....+++++++...+ .+.++ ++... +.-.+|++++-..
T Consensus 405 ---~l~iV~Fr~~~~d~~n~~l~~~l~~~G---~~~~s----------~t~~~--------------g~~~lR~~i~n~~ 454 (476)
T d1js3a_ 405 ---TLGLVCFRLKGSDGLNEALLERINSAR---KIHLV----------PCRLR--------------GQFVLRFAICSRK 454 (476)
T ss_dssp ---CSSEEEEEESSCHHHHHHHHHHHHHHT---SCBCE----------EEEET--------------TEEEEEEECCCTT
T ss_pred ---ceEEEEEEccCChHHHHHHHHHHHhcC---CEEEe----------eeeEC--------------CEEEEEEEeCCCC
Confidence 12389999873 333456777765422 11111 11110 1237999998345
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 013210 424 TLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 424 ~~~~~i~~l~~al~~~~~ 441 (447)
++++.|+.+.+.|+++.+
T Consensus 455 Tt~~did~~~~~i~~~a~ 472 (476)
T d1js3a_ 455 VESGHVRLAWEHIRGLAA 472 (476)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 667778888888777643
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.74 E-value=5.9e-17 Score=154.07 Aligned_cols=283 Identities=17% Similarity=0.206 Sum_probs=190.1
Q ss_pred cccccccccccCCH-HHHHHhhcCCCC--CCCCCccccCCCCchHHHHH----HHHHHHhCCCeEEE-eCChHHHHHHHH
Q 013210 60 MSIEASATFTVMEP-ETMRRMFAGELG--PDRDFFIYSRHFNPTVLNLS----RQMAALEGTEAAYC-TASGMSAISSVL 131 (447)
Q Consensus 60 ~pi~~att~~~~~~-~~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~l~----~~ia~l~g~~~~~~-tsggt~A~~~al 131 (447)
-++.+|.+++.|.+ +.+-..|.++|. -|...| |+ +...+.++| ++..++++++.+-+ .-||+.||.+++
T Consensus 26 l~LiaSEN~~S~~v~~a~~S~l~nkyaeG~pg~ry-y~--G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~ 102 (405)
T d1kl1a_ 26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRY-YG--GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVY 102 (405)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEES-SS--CCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHH
T ss_pred ceEeccCCcCCHHHHHHhcCcccCcCcCCCCCccc-cC--CchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHH
Confidence 35677888887776 555556655543 122112 11 233333333 55678899987644 569999999999
Q ss_pred HHhcCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCCccccCH
Q 013210 132 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANI 205 (447)
Q Consensus 132 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l 205 (447)
.++++|||+|+..+..+++....-..........++..++.+ |.+++++.++..++++|++-.-..| ...|+
T Consensus 103 ~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--r~~d~ 180 (405)
T d1kl1a_ 103 FTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYP--RIIDF 180 (405)
T ss_dssp HHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCH
T ss_pred HHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccccc--cccCh
Confidence 999999999999997776654321000000012344444432 8999999886778999998655443 56799
Q ss_pred HHHHHHHHhcCCEEEEeCCC-C-----CCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhh
Q 013210 206 PELSRLAHDKGVTVVVDNTF-S-----PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 279 (447)
Q Consensus 206 ~~I~~la~~~gi~livD~~~-~-----~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~ 279 (447)
+++.++|++.|+++++|.+| . +...+|.+. +|+++.|.||.+.||- ||++..++++.+++...... ...
T Consensus 181 ~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-aDvvt~tThKtlrGPr---gg~I~~~~~~~~~i~~avfP-g~q 255 (405)
T d1kl1a_ 181 AKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-AHFVTTTTHKTLRGPR---GGMILCQEQFAKQIDKAIFP-GIQ 255 (405)
T ss_dssp HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-CSEEEEESSSTTCCCS---CEEEEECHHHHHHHHHHHTT-TTC
T ss_pred HHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh-hhheeccccccccCCC---CceEEecchhHHHHHhhhCc-ccc
Confidence 99999999999999999998 3 345577754 8999999999999773 59999999888888764331 223
Q ss_pred cCCCccHHHHHHHH--ccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013210 280 LGPTMNPKVAFELS--ERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 356 (447)
Q Consensus 280 ~g~~~~~~~a~~~~--~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l 356 (447)
.|+.+...++.+.. ..+ +.+.+..++..++++.|++.|.+.|+++..-+-. ..++.+.+
T Consensus 256 ggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd------------------~H~vlvdl 317 (405)
T d1kl1a_ 256 GGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTD------------------NHLLLVDL 317 (405)
T ss_dssp SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS------------------SSEEEEEC
T ss_pred cCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCc------------------cceeeccc
Confidence 34444444443321 122 3456777888999999999999999987643321 22788887
Q ss_pred C----CHHHHHHHHHHhh
Q 013210 357 E----TEEKANRLMNYLQ 370 (447)
Q Consensus 357 ~----~~~~~~~l~~~l~ 370 (447)
. +...++..+++..
T Consensus 318 ~~~~~~g~~ae~~Le~ag 335 (405)
T d1kl1a_ 318 RPQQLTGKTAEKVLDEVG 335 (405)
T ss_dssp GGGTCCHHHHHHHHHHHT
T ss_pred cccCCcHHHHHHHHHHcC
Confidence 4 3444555555554
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.2e-16 Score=152.78 Aligned_cols=286 Identities=17% Similarity=0.167 Sum_probs=187.8
Q ss_pred cccccccccccCCH-HHHHHhhcCCCCC--CCCCccccCCCCchHHHH-HHHHHHHhCCCeEEE-eCChHHHHHHHHHHh
Q 013210 60 MSIEASATFTVMEP-ETMRRMFAGELGP--DRDFFIYSRHFNPTVLNL-SRQMAALEGTEAAYC-TASGMSAISSVLMQL 134 (447)
Q Consensus 60 ~pi~~att~~~~~~-~~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~l-~~~ia~l~g~~~~~~-tsggt~A~~~al~~l 134 (447)
-++.+|.+++.+.+ +.+-..|.++|.. |...|+-|-..-..++.+ .++..+++|++.+-+ ..||+.||.+++.++
T Consensus 29 i~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~Al 108 (416)
T d1dfoa_ 29 IELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTAL 108 (416)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH
T ss_pred ceEecCcccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHh
Confidence 35577888887776 5555566665532 222222221111223333 345567899987644 679999999999999
Q ss_pred cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHH
Q 013210 135 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 209 (447)
Q Consensus 135 ~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~ 209 (447)
++|||+|+..+..+++....-..........+...++.+ |.+++++.++..++++|++..-. .....|++++.
T Consensus 109 l~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~r 186 (416)
T d1dfoa_ 109 LEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSA--YSGVVDWAKMR 186 (416)
T ss_dssp CCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEECSS--CCSCCCHHHHH
T ss_pred cCCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEecccc--cccccCHHHHH
Confidence 999999999999887764322100000011233333322 89999988767789999987544 34678999999
Q ss_pred HHHHhcCCEEEEeCCC-CC-----CCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcC---hHHHHHHHHHhhhhhhhc
Q 013210 210 RLAHDKGVTVVVDNTF-SP-----LVLSPARLGADVVVHSISKFISGGADIIAGAVCGP---ANLVNSMMDLHQGALMLL 280 (447)
Q Consensus 210 ~la~~~gi~livD~~~-~~-----~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~---~~~~~~l~~~~~~~~~~~ 280 (447)
++|++.|+++++|.+| .+ ...+|... +|+++.|.||.+.||- ||+++.+ +++.+++...-..+ ...
T Consensus 187 eiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDvvt~tThKtlrGPr---ggiI~~~~~~~~~~~~i~~avfPg-~qg 261 (416)
T d1dfoa_ 187 EIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHVVTTTTHKTLAGPR---GGLILAKGGSEELYKKLNSAVFPG-GQG 261 (416)
T ss_dssp HHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSEEEEESSSTTCCCS---CEEEEESSCCHHHHHHHHHHHTTT-TCS
T ss_pred HHHHhcCceEEcchhhhhcceeccccCCcccc-cceeeeehhhcccCCC---ceEEEeccchHhHHHHHHhhhCcc-ccc
Confidence 9999999999999998 33 34577776 6999999999999873 5888764 57777776443211 233
Q ss_pred CCCccHHHHHH--HHccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013210 281 GPTMNPKVAFE--LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 357 (447)
Q Consensus 281 g~~~~~~~a~~--~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~ 357 (447)
|+.+...++.+ ....+ ..+.+..++..++++.|++.|.+.|+++...+-.. .++.+.+.
T Consensus 262 gp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdn------------------Hlvlvdl~ 323 (416)
T d1dfoa_ 262 GPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDN------------------HLFLVDLV 323 (416)
T ss_dssp SCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS------------------SEEEEECG
T ss_pred CccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCC------------------ceeEEEec
Confidence 44444444333 22223 24567788899999999999999999877543221 27778874
Q ss_pred ----CHHHHHHHHHHhh
Q 013210 358 ----TEEKANRLMNYLQ 370 (447)
Q Consensus 358 ----~~~~~~~l~~~l~ 370 (447)
+...++..+++..
T Consensus 324 ~~~~~G~~a~~~Le~~g 340 (416)
T d1dfoa_ 324 DKNLTGKEADAALGRAN 340 (416)
T ss_dssp GGTCCHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHcC
Confidence 3344555555544
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.4e-16 Score=157.09 Aligned_cols=250 Identities=11% Similarity=0.095 Sum_probs=150.2
Q ss_pred CCchHHHHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhhcCc---------c
Q 013210 97 FNPTVLNLSRQMAALEG---TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR---------A 162 (447)
Q Consensus 97 ~~~~~~~l~~~ia~l~g---~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~---------~ 162 (447)
.++...++.+.+.++.. .+.++|++||+||+..|++... ...++|+.....||+........... .
T Consensus 81 ~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~ 160 (425)
T d1sffa_ 81 AYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGL 160 (425)
T ss_dssp ECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCC
T ss_pred cCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCccc
Confidence 35556778888888874 3569999999999999998643 23468999999998865544211100 0
Q ss_pred cCeeEEEeCCC-------------CHHHHHHh-hccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCC
Q 013210 163 CNITTTFVDIS-------------DHEMVNSA-IVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNT 224 (447)
Q Consensus 163 ~g~~~~~v~~~-------------d~~~l~~~-i~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~ 224 (447)
........+.. +.+++... ....++.+|++|.+....|.+.+ ++.|.++|++||+++|+||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV 240 (425)
T d1sffa_ 161 MPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEV 240 (425)
T ss_dssp CCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred ccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccc
Confidence 01111111111 11111111 11346789999999988887764 88999999999999999999
Q ss_pred CCCCCC-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhhhhhhhcCCCccHHHHHHHHccCC
Q 013210 225 FSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 297 (447)
Q Consensus 225 ~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~ 297 (447)
++++.. .......|+++ ++|.+|+ |.++ |++++++++++.+..... ..+..|++++..+|...+..++
T Consensus 241 ~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~g-G~P~-~av~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~a~L~~i~ 315 (425)
T d1sffa_ 241 QSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAG-GFPL-AGVTGRAEVMDAVAPGGL-GGTYAGNPIACVAALEVLKVFE 315 (425)
T ss_dssp TTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGT-SSCC-EEEEEEHHHHTTSCTTSB-CCSSSSCHHHHHHHHHHHHHHH
T ss_pred cccCCCcchhhHHHhcCCCcccee--cccccCC-Ccce-EEEEEcHHHHHhhCCCCC-CCCCCcCHHHHHHHHHHHHHHH
Confidence 966421 11223467776 8999986 6778 888888888776654332 2234444444444444443331
Q ss_pred cHHHHHHHHHHHHHHHHHH----HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------CHHHHHHH
Q 013210 298 HLGLRMKEHCHRALIFARR----MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRL 365 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~----L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~~~~~~~l 365 (447)
. ....++..+..+++.+. +++++.... ..|.|.++.|+|. +......+
T Consensus 316 ~-~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~-------------------vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~ 375 (425)
T d1sffa_ 316 Q-ENLLQKANDLGQKLKDGLLAIAEKHPEIGD-------------------VRGLGAMIAIELFEDGDHNKPDAKLTAEI 375 (425)
T ss_dssp H-TTHHHHHHHHHHHHHHHHHHHHHTCTTEEE-------------------EEEETTEEEEEEBGGGCTTSBCHHHHHHH
T ss_pred H-hhhhhhhhhhhhhhhhhhhhhHhhCCceEE-------------------EEccccEEEEEEeccCccCCccHHHHHHH
Confidence 1 11233334444444444 444444111 1267889999984 23344566
Q ss_pred HHHhhc
Q 013210 366 MNYLQN 371 (447)
Q Consensus 366 ~~~l~~ 371 (447)
..++..
T Consensus 376 ~~~l~~ 381 (425)
T d1sffa_ 376 VARARD 381 (425)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.71 E-value=6e-16 Score=154.61 Aligned_cols=225 Identities=14% Similarity=0.049 Sum_probs=138.5
Q ss_pred cccCCCCchHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCC-------CeEEEeCCCchhHHHHHHhhcCcccC
Q 013210 92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASGMSAISSVLMQLCSSG-------GHVVAARTLYGGTHALLTHFFPRACN 164 (447)
Q Consensus 92 ~~~r~~~~~~~~l~~~ia~l~g~~~~~~tsggt~A~~~al~~l~~~g-------d~Vi~~~~~y~~~~~~~~~~~~~~~g 164 (447)
.|+ .++.+.+|++.+++++|.+.++||+||++|+..+++.++++| ..++.....|..+..... ..|
T Consensus 70 ~y~--~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~-----~~g 142 (465)
T d1ax4a_ 70 AYA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE-----LNG 142 (465)
T ss_dssp CSS--SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH-----HTT
T ss_pred hhc--cChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHH-----HcC
Confidence 355 468888999999999999999999999999999999887543 234555554444443331 134
Q ss_pred eeEEEeCC---------------CCHHHHHHhhcc---CCceEEEEEcCCCCCccc-c---CHHHHHHHHHhcCCEEEEe
Q 013210 165 ITTTFVDI---------------SDHEMVNSAIVQ---GRTKVLYFESISNPTLAV-A---NIPELSRLAHDKGVTVVVD 222 (447)
Q Consensus 165 ~~~~~v~~---------------~d~~~l~~~i~~---~~t~lV~i~~~~NptG~v-~---~l~~I~~la~~~gi~livD 222 (447)
..+..+.. .|+++|+++++. ..+.+++++.++|..|.. . ++++|.++|++||+++|+|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D 222 (465)
T d1ax4a_ 143 CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMD 222 (465)
T ss_dssp CEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEE
Confidence 44433211 188999998842 245677778877776543 3 4789999999999999999
Q ss_pred CCCCCC--C-----------CCccC------CCCeEEEeCCCccccCCCCeeEEEEEcChH--HHHHHHHHhh-hhhhhc
Q 013210 223 NTFSPL--V-----------LSPAR------LGADVVVHSISKFISGGADIIAGAVCGPAN--LVNSMMDLHQ-GALMLL 280 (447)
Q Consensus 223 ~~~~~~--~-----------~~~~~------~g~di~~~S~sK~~g~~g~~igG~l~~~~~--~~~~l~~~~~-~~~~~~ 280 (447)
+++... . ..... ...|++++|.+|.+++++ +|+++.+++ +......... ......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 299 (465)
T d1ax4a_ 223 SARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNEEIFTLARQRCVPMEGFVT 299 (465)
T ss_dssp CTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCHHHHHHHHHHHHHHTCSTT
T ss_pred CcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc---ceeEeecchHHHHHhhhccccccccCCC
Confidence 998311 0 01000 026899999999988775 377776543 2232222111 000011
Q ss_pred CCCccHHH--HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013210 281 GPTMNPKV--AFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY 326 (447)
Q Consensus 281 g~~~~~~~--a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~ 326 (447)
...+.... +..............++..++.++|.+.|++.+.++..
T Consensus 300 ~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g~~~v~ 347 (465)
T d1ax4a_ 300 YGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQY 347 (465)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCBCS
T ss_pred cchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 11122221 11111111111234455667788999999998765543
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=6.9e-17 Score=155.34 Aligned_cols=314 Identities=9% Similarity=-0.046 Sum_probs=186.9
Q ss_pred HHHHHhhcCCCCCCCCCccccCCC---CchHHHHHHHHHHHhCCC---eEEEeCChHHHHHHHHH-HhcCCCCeEEEeCC
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRHF---NPTVLNLSRQMAALEGTE---AAYCTASGMSAISSVLM-QLCSSGGHVVAART 146 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~~---~~~~~~l~~~ia~l~g~~---~~~~tsggt~A~~~al~-~l~~~gd~Vi~~~~ 146 (447)
++|.+.+.+..+++.+.+..+... ....++.++.|+++++++ .++|++|++++++.+.. .+..+++.+++...
T Consensus 18 ~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~ 97 (360)
T d1bjna_ 18 KQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDA 97 (360)
T ss_dssp HHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccccceecc
Confidence 556555554444455555555322 245789999999999984 37888877777666554 44566667666655
Q ss_pred CchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEE
Q 013210 147 LYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 221 (447)
Q Consensus 147 ~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~liv 221 (447)
.+.+. .+.....+ .|..+..+... +.+.++..+ ..+++++++.+.+|.||...+++.+. ++.+++++++
T Consensus 98 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~v 171 (360)
T d1bjna_ 98 GYWAA--SAIKEAKK-YCTPNVFDAKVTVDGLRAVKPMREW-QLSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAA 171 (360)
T ss_dssp SHHHH--HHHHHHTT-TSEEEEEECEEEETTEEEECCGGGC-CCCSSCSCEEECSEETTTTEECCCCC--CCCTTCCEEE
T ss_pred cchhh--hhHHHHhh-cCccceeeccccCCCcchhhhhhhh-ccCCceeEEEecccccccCcccccee--cccccceeee
Confidence 44333 22233333 56655554322 344445555 67888888889999999999887664 5678999999
Q ss_pred eCCCCCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHH---------HHHHhhhhhhhcCCCccHH--HHH
Q 013210 222 DNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS---------MMDLHQGALMLLGPTMNPK--VAF 290 (447)
Q Consensus 222 D~~~~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~---------l~~~~~~~~~~~g~~~~~~--~a~ 290 (447)
|.+++....+....++|+++.|.+|.+++++.. |+++..+...+. ......... ....+.... .+.
T Consensus 172 Da~~~~~~~~vd~~~~dv~~~ss~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 248 (360)
T d1bjna_ 172 DFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLT--IVIVREDLLGKANIACPSILDYSILNDNGS-MFNTPPTFAWYLSG 248 (360)
T ss_dssp ECTTTTTSSCCCGGGCSEEEEETTTTTSSTTCE--EEEEEGGGCSCCCTTSCGGGCHHHHHHTTT-CSSCCCHHHHHHHH
T ss_pred eeeccccceeeeeccceeEEEEcccccccCCCc--eeEeeehhhhhccccCCcchhhHHHHhhhh-hccccccchHHHHH
Confidence 999854444444456789999999999988753 444333221110 011111010 111121111 111
Q ss_pred H---HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHH
Q 013210 291 E---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN 367 (447)
Q Consensus 291 ~---~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~ 367 (447)
. ............+++.+.+..+...+...+.....+. +.. ..-++++|.+++......+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------rs~~v~~f~~~~~~~~~~~~~ 313 (360)
T d1bjna_ 249 LVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVA-KRN--------------RSRMNVPFQLADSALDKLFLE 313 (360)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBC-GGG--------------BCSSEEEEEESSGGGHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCC-ccc--------------ccceEEEEEcCCcccHHHHHH
Confidence 1 1111222334445556666666666666655333222 110 123489999986555677888
Q ss_pred HhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 368 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 368 ~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
.|... | +.+..|.. .-+.+|||++ ..+++++|+.|.++|+++.+
T Consensus 314 ~l~~~---G-i~~~~G~~-------------------------~~g~~Ris~~-~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 314 ESFAA---G-LHALKGHR-------------------------VVGGMRASIY-NAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp HHHHT---T-EECCBCCT-------------------------TTCSEEEECC-TTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHC---C-CEeecCCC-------------------------ccCeEEEEec-CCCCHHHHHHHHHHHHHHHH
Confidence 78763 4 45444410 0134999999 99999999999999998764
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.69 E-value=1.2e-16 Score=154.36 Aligned_cols=313 Identities=11% Similarity=0.022 Sum_probs=185.7
Q ss_pred CCH-HHHHHhhcCCCCCCCCCccccCC---CCchHHHHHHHHHHHhCCCe---EEEeCChHHHHH-HHHHHhcCCCCeEE
Q 013210 71 MEP-ETMRRMFAGELGPDRDFFIYSRH---FNPTVLNLSRQMAALEGTEA---AYCTASGMSAIS-SVLMQLCSSGGHVV 142 (447)
Q Consensus 71 ~~~-~~~~~~~~~~~~~~~~~~~~~r~---~~~~~~~l~~~ia~l~g~~~---~~~tsggt~A~~-~al~~l~~~gd~Vi 142 (447)
+++ ++|.+.+.+..+++++.+..+.. .....++.++.|++++++++ ++|++|+++++. +++..+..+|++++
T Consensus 16 ~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l 95 (361)
T d2c0ra1 16 LEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTAN 95 (361)
T ss_dssp HHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCceE
Confidence 345 66666665544555666666633 23567889999999999853 778777766554 55556677788777
Q ss_pred EeCCCchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCC
Q 013210 143 AARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV 217 (447)
Q Consensus 143 ~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi 217 (447)
+..... +...+.....+ .|..+..+..+ +++.+++.+ ..++ .+. ++|.||.+.|+++|.++|+++|+
T Consensus 96 ~~~~g~--~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~---v~~~tg~~~~~~~i~~~~~~~~a 167 (361)
T d2c0ra1 96 YVMTGS--WASKALKEAKL-IGDTHVAASSEASNYMTLPKLQEIQ-LQDN-AAY---LHLTSNETIEGAQFKAFPDTGSV 167 (361)
T ss_dssp EEECSH--HHHHHHHHHHH-HSCEEEEEECGGGTTCSCCCGGGCC-CCTT-EEE---EEEESEETTTTEECSSCCCCTTS
T ss_pred EEeech--hhhhhhhhhhh-cCceeeeeccccccccchhhhhhhc-ccCc-ceE---EEEecccceecceEEEeeccCCc
Confidence 665432 33333333333 67777766543 556666655 3332 333 45789999999999999999999
Q ss_pred EEEEeCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHH---------HHHHHhhhhhhhcCCCccH
Q 013210 218 TVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN---------SMMDLHQGALMLLGPTMNP 286 (447)
Q Consensus 218 ~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~---------~l~~~~~~~~~~~g~~~~~ 286 (447)
++++|.++ +..+++..+++ +.+.|.+|.++++|.. ++++..+.... .+........ ........
T Consensus 168 l~~vDavss~g~~~id~~~~d--i~~~s~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 242 (361)
T d2c0ra1 168 PLIGDMSSDILSRPFDLNQFG--LVYAGAQKNLGPSGVT--VVIVREDLVAESPKHLPTMLRYDTYVKNNS-LYNTPPSF 242 (361)
T ss_dssp CEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCSSCE--EEEEEGGGSSSCCTTSCGGGCHHHHHHTTT-CSSCCCHH
T ss_pred eEEEEeeccccccccccccce--eEEEecccccccccCc--EEEEEhHHhhhCcccccccccccccccccc-ccccccce
Confidence 99999998 55667776654 5556689999988752 33333221111 0111111010 11122111
Q ss_pred H-H-HHH---HHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH
Q 013210 287 K-V-AFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE 360 (447)
Q Consensus 287 ~-~-a~~---~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~ 360 (447)
. . +.. ............+++++.+..+......... ...... +.. ..-.+++|.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------rS~~~~~~~~~~~~ 307 (361)
T d2c0ra1 243 GIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD-VDS--------------RSDMNITFRLASEE 307 (361)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC-GGG--------------BCSSEEEEECSCHH
T ss_pred eeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCC-hhh--------------ccceEEEEECCCcc
Confidence 1 1 111 1112222334445555666666666555433 222211 111 01237899998776
Q ss_pred HHHHHHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013210 361 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 440 (447)
Q Consensus 361 ~~~~l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~ 440 (447)
+...+...|+. .| |.+..|.. | -+.+|||+. ...+.++++.|.++|+++.
T Consensus 308 ~~~~~~~~L~~---~G-I~~~~G~~--------~-----------------~g~~RIs~~-~~~~~edv~~Lv~~l~~~~ 357 (361)
T d2c0ra1 308 LEKEFVKASEQ---EG-FVGLKGHR--------S-----------------VGGLRASIY-NAVPYESCEALVQFMEHFK 357 (361)
T ss_dssp HHHHHHHHHHH---TT-EESCBCCT--------T-----------------TCSEEEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH---CC-CEEecCCC--------c-----------------CCeEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence 67888888886 34 45444521 0 123999999 8989999999999999876
Q ss_pred h
Q 013210 441 D 441 (447)
Q Consensus 441 ~ 441 (447)
+
T Consensus 358 ~ 358 (361)
T d2c0ra1 358 R 358 (361)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.69 E-value=6.8e-16 Score=152.14 Aligned_cols=216 Identities=15% Similarity=0.152 Sum_probs=141.1
Q ss_pred CchHHHHHHHHHHHhC-CCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHH---------HhhcCccc--
Q 013210 98 NPTVLNLSRQMAALEG-TEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALL---------THFFPRAC-- 163 (447)
Q Consensus 98 ~~~~~~l~~~ia~l~g-~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~---------~~~~~~~~-- 163 (447)
......+.+.++++.+ .+.++|++||+||+..|++... ...++|+.....||+..... ....+...
T Consensus 91 ~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~ 170 (427)
T d2gsaa_ 91 CALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGV 170 (427)
T ss_dssp CHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSS
T ss_pred hhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCC
Confidence 3444667777777764 4679999999999999998543 23568999999988753221 01111101
Q ss_pred ----CeeEEEeCCCCHHHHHHhhcc--CCceEEEEEcCCCCCccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013210 164 ----NITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-- 231 (447)
Q Consensus 164 ----g~~~~~v~~~d~~~l~~~i~~--~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-- 231 (447)
......++..|++++++.+++ .++.+|++|.+....|.+.| +++|.++|++||+++|+||+++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~ 250 (427)
T d2gsaa_ 171 PKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYG 250 (427)
T ss_dssp CHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTT
T ss_pred cccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceeccc
Confidence 123445567799999999843 46889999999988898887 999999999999999999999765321
Q ss_pred ----ccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh--hhhhhcCCCccHHHHHHHHccCCcHHHHHHH
Q 013210 232 ----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKE 305 (447)
Q Consensus 232 ----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~ 305 (447)
-.....|+++ ++|.+|+ |..+ |++++++++++.+..... ...+..|++++..++.+.+..++. ....++
T Consensus 251 ~~~~~~gi~PDi~~--~gK~lgg-G~p~-~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~-~~l~~~ 325 (427)
T d2gsaa_ 251 GVQEKFGVTPDLTT--LGKIIGG-GLPV-GAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PGTYEY 325 (427)
T ss_dssp CHHHHTTCCCSEEE--ECGGGGT-TSCC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TTHHHH
T ss_pred chHHhcCCCHHHHh--hhhccCC-Ccce-eeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhh-hhHHhh
Confidence 1122467777 8899985 6777 777889888876653211 112234444444444444443322 112344
Q ss_pred HHHHHHHHHHHHH
Q 013210 306 HCHRALIFARRMK 318 (447)
Q Consensus 306 ~~~~~~~l~~~L~ 318 (447)
..++.++|.+.|+
T Consensus 326 ~~~~g~~l~~~L~ 338 (427)
T d2gsaa_ 326 LDQITKRLSDGLL 338 (427)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4555555555554
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.67 E-value=1.4e-15 Score=150.20 Aligned_cols=256 Identities=13% Similarity=0.143 Sum_probs=150.4
Q ss_pred ccCCCCchHHHHHHHHHHHh--CCCeEEEeCChHHHHHHHHHHhc--CCCCeEEEeCCCchhHHHHHHhh---------c
Q 013210 93 YSRHFNPTVLNLSRQMAALE--GTEAAYCTASGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF---------F 159 (447)
Q Consensus 93 ~~r~~~~~~~~l~~~ia~l~--g~~~~~~tsggt~A~~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~---------~ 159 (447)
.....++...++.++|.++. +.+.++|++||+||+..|++... ...++|+.....||+........ .
T Consensus 77 ~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~ 156 (431)
T d1zoda1 77 FSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVG 156 (431)
T ss_dssp CTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSC
T ss_pred ccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccC
Confidence 33445566677888888876 55789999999999999998642 33568899998988865443111 1
Q ss_pred CcccCeeEEEeCCC---------------CHHHHHHhh---ccCCceEEEEEcCCCCCccccC----HHHHHHHHHhcCC
Q 013210 160 PRACNITTTFVDIS---------------DHEMVNSAI---VQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV 217 (447)
Q Consensus 160 ~~~~g~~~~~v~~~---------------d~~~l~~~i---~~~~t~lV~i~~~~NptG~v~~----l~~I~~la~~~gi 217 (447)
+...+......+.. +++.+...+ ..+++.+|++|.+....|.+.+ +++|.++|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gi 236 (431)
T d1zoda1 157 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGM 236 (431)
T ss_dssp CCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTC
T ss_pred CcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCc
Confidence 11011111111100 223333222 1357899999999888888765 8999999999999
Q ss_pred EEEEeCCCCCCCCCc-------cCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh-hhhhhcCCCccHHHH
Q 013210 218 TVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-GALMLLGPTMNPKVA 289 (447)
Q Consensus 218 ~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-~~~~~~g~~~~~~~a 289 (447)
++|+||+++++.... .....|+++ ++|.+++ |..+ +.+++.+++.+....... ...+..+++++..++
T Consensus 237 llI~DEV~tG~gRtG~~~~~~~~gv~PDi~~--~gK~l~g-G~p~-~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa 312 (431)
T d1zoda1 237 LLILDEAQTGVGRTGTMFACQRDGVTPDILT--LSKTLGA-GLPL-AAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVG 312 (431)
T ss_dssp EEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECHHHHT-TSSC-EEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHH
T ss_pred eEEeccccccccccccccccccCCCCcchhc--ccccccc-cccc-ceeeeeecchhhhhcccccccCCCCCCcchHHHH
Confidence 999999997653211 122467777 8899995 5677 666777777666543221 122233444433333
Q ss_pred HHHHccC--CcHHHHHHHH-HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------C
Q 013210 290 FELSERI--PHLGLRMKEH-CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------T 358 (447)
Q Consensus 290 ~~~~~~~--~~l~~~~~~~-~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~ 358 (447)
.+.+..+ +.+.++..+. ....+.+.+.+.+++.... ..|.|.++.|+|. .
T Consensus 313 ~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~-------------------vrG~Glm~~ie~~~~~~~~~~~ 373 (431)
T d1zoda1 313 LRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGD-------------------VRGRGLLLGVEIVKDRRTKEPA 373 (431)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE-------------------EEEETTEEEEEEEEETTTTEEC
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEE-------------------EeecceEEEEEEecCCcccCcc
Confidence 3333222 2233333322 2333334444455554111 1267889999883 1
Q ss_pred HHHHHHHHHHhhc
Q 013210 359 EEKANRLMNYLQN 371 (447)
Q Consensus 359 ~~~~~~l~~~l~~ 371 (447)
......+...+..
T Consensus 374 ~~~~~~i~~~~~~ 386 (431)
T d1zoda1 374 DGLGAKITRECMN 386 (431)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2234556665554
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=7.5e-15 Score=144.46 Aligned_cols=292 Identities=11% Similarity=0.143 Sum_probs=178.8
Q ss_pred cCCCCchHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc-------CCCCeEEEeCCCchhHHHHHHhhc-----
Q 013210 94 SRHFNPTVLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC-------SSGGHVVAARTLYGGTHALLTHFF----- 159 (447)
Q Consensus 94 ~r~~~~~~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~-------~~gd~Vi~~~~~y~~~~~~~~~~~----- 159 (447)
+...++...++.+++.+... .+.++|++||++|+..+++... ....+|+.....||+.........
T Consensus 81 ~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~ 160 (429)
T d1s0aa_ 81 GGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNS 160 (429)
T ss_dssp SSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTT
T ss_pred CCccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccc
Confidence 33444555667777777754 3569999999999999987543 123589999988877543221110
Q ss_pred -----CcccCeeEEEeC-----------CCCHHHHHHhhc--cCCceEEEEEcCC-CCCcccc-C---HHHHHHHHHhcC
Q 013210 160 -----PRACNITTTFVD-----------ISDHEMVNSAIV--QGRTKVLYFESIS-NPTLAVA-N---IPELSRLAHDKG 216 (447)
Q Consensus 160 -----~~~~g~~~~~v~-----------~~d~~~l~~~i~--~~~t~lV~i~~~~-NptG~v~-~---l~~I~~la~~~g 216 (447)
.. ........+ ..+++++++.+. .+++.+|++|.+. +..|.+. | +++|.++|++||
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~g 239 (429)
T d1s0aa_ 161 MHSLWKG-YLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG 239 (429)
T ss_dssp TGGGGTT-TSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred cccccCc-cccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcC
Confidence 00 000111111 114555555442 3678999999875 5555543 3 889999999999
Q ss_pred CEEEEeCCCCCCCC-------CccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHHHHHHhh----hhhhhcCCCcc
Q 013210 217 VTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMN 285 (447)
Q Consensus 217 i~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~----~~~~~~g~~~~ 285 (447)
+++|+||+++++.. .......|+++ ++|.+++.+..+ |+++.++++.+.+..... ...+..|++++
T Consensus 240 illI~DEV~tGfGRtG~~~~~~~~~v~PDi~~--~gK~l~gG~~p~-~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~ 316 (429)
T d1s0aa_ 240 ILLIADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTGGTMTL-SATLTTREVAETISNGEAGCFMHGPTFMGNPLA 316 (429)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSSSCC-EEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHH
T ss_pred cceehhhccccccccccccccccceecccccc--cccccccccccc-cchhhHHHHHhccCCCCCcceeecCCCCCCccc
Confidence 99999999976632 11223467777 889998766777 888999999887754221 12234455555
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHH
Q 013210 286 PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL 365 (447)
Q Consensus 286 ~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l 365 (447)
..++.+.+..++. ....++..+..++|.+.|++... .|.+. +..|.|.++.+++..+.....+
T Consensus 317 ~aaa~a~L~~i~~-~~~~~~~~~~g~~l~~~L~~l~~---~~~v~-------------~vrg~Gl~~~~e~~~~~~~~~~ 379 (429)
T d1s0aa_ 317 CAAANASLAILES-GDWQQQVADIEVQLREQLAPARD---AEMVA-------------DVRVLGAIGVVETTHPVNMAAL 379 (429)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHGGGGG---CTTEE-------------EEEEETTEEEEEESSCBCHHHH
T ss_pred chhhhcccccccc-ccccchhhHHHHHHHHHHHHhcc---CCceE-------------EEeecccEEEEEecCcccHHHH
Confidence 5555444443322 12345556666777777765411 11111 1226888999999855556667
Q ss_pred HHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 366 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 366 ~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
...+.. .|++.... .+.|||++. .--++++|+.+.++|++.
T Consensus 380 ~~~~~~---~Gl~~~~~-----------------------------g~~i~~~Pp-l~it~~eid~~~~~l~~a 420 (429)
T d1s0aa_ 380 QKFFVE---QGVWIRPF-----------------------------GKLIYLMPP-YIILPQQLQRLTAAVNRA 420 (429)
T ss_dssp HHHHHH---TTEECCCB-----------------------------TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHH---CCcEEEec-----------------------------CCEEEEeCC-cCCCHHHHHHHHHHHHHH
Confidence 777664 23321111 256888877 656677777777777654
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.65 E-value=4.4e-15 Score=143.44 Aligned_cols=286 Identities=13% Similarity=0.147 Sum_probs=175.6
Q ss_pred cccccccccccCCH-HHHHHhhcCCCC--CCCCCccccCCCCchHHH-HHHHHHHHhCCCeE-----EEeCChHHHHHHH
Q 013210 60 MSIEASATFTVMEP-ETMRRMFAGELG--PDRDFFIYSRHFNPTVLN-LSRQMAALEGTEAA-----YCTASGMSAISSV 130 (447)
Q Consensus 60 ~pi~~att~~~~~~-~~~~~~~~~~~~--~~~~~~~~~r~~~~~~~~-l~~~ia~l~g~~~~-----~~tsggt~A~~~a 130 (447)
-++.+|.+++.+.+ +.+-..|.++|. -|..-|+-|-..-..++. +.++..++++++.. +=.-||+.|+.++
T Consensus 30 l~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av 109 (463)
T d2a7va1 30 LELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAV 109 (463)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHH
T ss_pred eeEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHH
Confidence 45677888887777 555566666553 233333333322333444 35667788998763 4557999999999
Q ss_pred HHHhcCCCCeEEEeCCCchhHHHHHH--hhcC-cccCe--eEEEeCCC------CHHHHHHhhccCCceEEEEEcCCCCC
Q 013210 131 LMQLCSSGGHVVAARTLYGGTHALLT--HFFP-RACNI--TTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPT 199 (447)
Q Consensus 131 l~~l~~~gd~Vi~~~~~y~~~~~~~~--~~~~-~~~g~--~~~~v~~~------d~~~l~~~i~~~~t~lV~i~~~~Npt 199 (447)
+.++++|||+|+..+..+++....-. .... ...|. +...+..+ |.+++++.++..++++|++-.-..|
T Consensus 110 ~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S~y~- 188 (463)
T d2a7va1 110 YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA- 188 (463)
T ss_dssp HHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred HHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEecccccc-
Confidence 99999999999988877766542210 0000 00122 22222222 8999998886778999998655544
Q ss_pred ccccCHHHHHHHHHhcCCEEEEeCCC------CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcCh----------
Q 013210 200 LAVANIPELSRLAHDKGVTVVVDNTF------SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA---------- 263 (447)
Q Consensus 200 G~v~~l~~I~~la~~~gi~livD~~~------~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~---------- 263 (447)
...|.+++.++|++.|+++++|.+| ++...+|... +|+++.|.||.+.|| | ||++..++
T Consensus 189 -r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-aDvvt~tTHKTlrGP--r-gGiIl~~~~~~~~~~~~~ 263 (463)
T d2a7va1 189 -RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGA--R-SGLIFYRKGVKAVDPKTG 263 (463)
T ss_dssp -SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSGGGCSC--S-CEEEEEECSEEEEETTTE
T ss_pred -cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-hhhhhchhhhhhcCC--C-ceEEEEcccccccccccC
Confidence 5679999999999999999999998 3445677765 699999999999877 3 58887654
Q ss_pred -----HHHHHHHHHhhhhhhhcCCCccHHHHHHHH--ccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchh
Q 013210 264 -----NLVNSMMDLHQGALMLLGPTMNPKVAFELS--ERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 335 (447)
Q Consensus 264 -----~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~--~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~ 335 (447)
++.+++...-. .+...|+.+...+|.+.. ..+ ..+.+..++..++++.|++.|.+.|+++...+-..
T Consensus 264 ~~~~~~~~~~i~~avF-Pg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~vv~ggTdn---- 338 (463)
T d2a7va1 264 REIPYTFEDRINFAVF-PSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDN---- 338 (463)
T ss_dssp EEEECCCHHHHHHHHT-TTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS----
T ss_pred ccchhHHHHHhhhhcC-cccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCC----
Confidence 56666665322 112344444444443322 122 34667788889999999999999999876543222
Q ss_pred HHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhh
Q 013210 336 ELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQ 370 (447)
Q Consensus 336 ~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~l~~~l~ 370 (447)
.++.+.+. +...++..++...
T Consensus 339 --------------Hlvlvdl~~~~~~G~~ae~~Le~~g 363 (463)
T d2a7va1 339 --------------HLVLVDLRPKGLDGARAERVLELVS 363 (463)
T ss_dssp --------------SEEEEECTTTTCCHHHHHHHHHHTT
T ss_pred --------------ceeeeeccccCCCHHHHHHHHHhcc
Confidence 27778874 3344555665555
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.65 E-value=2.4e-16 Score=151.93 Aligned_cols=310 Identities=10% Similarity=-0.043 Sum_probs=171.9
Q ss_pred HHHHHhhcCCCCCCCCCccccCC---CCchHHHHHHHHHHHhCCCe---EEEeCChHHHHHHHHHHh-cCCCCeEEEeCC
Q 013210 74 ETMRRMFAGELGPDRDFFIYSRH---FNPTVLNLSRQMAALEGTEA---AYCTASGMSAISSVLMQL-CSSGGHVVAART 146 (447)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~r~---~~~~~~~l~~~ia~l~g~~~---~~~tsggt~A~~~al~~l-~~~gd~Vi~~~~ 146 (447)
++|.+.+....+.+.+.+..+.. .....++.++.|++++++++ ++|++|++++++.+.... ..+++.+++...
T Consensus 20 ~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~ 99 (360)
T d1w23a_ 20 ERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLT 99 (360)
T ss_dssp HHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred HHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeec
Confidence 55555444433333343333322 23467899999999999843 778888877777655544 556777777665
Q ss_pred CchhHHHHHHhhcCcccCeeEEEeCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEE
Q 013210 147 LYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 221 (447)
Q Consensus 147 ~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~liv 221 (447)
.+.+.... ....+ .+..+...... .+++++... . ....+ +..|.||.+.|+++|.++|+++|+++++
T Consensus 100 g~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~---~~~~~tg~~~~~~~i~~~~~~~g~l~iv 171 (360)
T d1w23a_ 100 GSWSEKAL--KEAKL-LGETHIAASTKANSYQSIPDFSEFQ-L-NENDA---YLHITSNNTIYGTQYQNFPEINHAPLIA 171 (360)
T ss_dssp SHHHHHHH--HHHHT-TSEEEEEEECGGGTSCSCCCGGGCC-C-CTTEE---EEEEESEETTTTEECSSCCCCCSSCEEE
T ss_pred cchhhhhH--HHHHH-hhhcceeeccccccccchhhhhhcc-c-ccccc---eeEecCCccccceeeeeccccceeeEEe
Confidence 54443322 22222 35444433222 233333322 1 22333 3456789999999999999999999999
Q ss_pred eCCC--CCCCCCccCCCCeEEEeCCCccccCCCCeeEEEEEcChHHHHH---------HHHHhhhhhhhcCCCccH-HHH
Q 013210 222 DNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS---------MMDLHQGALMLLGPTMNP-KVA 289 (447)
Q Consensus 222 D~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~---------l~~~~~~~~~~~g~~~~~-~~a 289 (447)
|.++ +...++..++++|+++.+.+|+++++ . |+++.++...+. ......... ........ ..+
T Consensus 172 Davqs~g~~~id~~~~~vd~~~~~~~k~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 246 (360)
T d1w23a_ 172 DMSSDILSRPLKVNQFGMIYAGAQKNLGPSGV---T-VVIVKKDLLNTKVEQVPTMLQYATHIKSDS-LYNTPPTFSIYM 246 (360)
T ss_dssp ECTTTTTSSCCCGGGCSEEEEETTTTTSCTTC---E-EEEEEHHHHCSCCTTCCGGGCHHHHHHTTT-CSSCCCHHHHHH
T ss_pred eccccccccccccccccceEEeeccccccCCc---c-eeeEechhhhcccccCCcchhhhhhhhhhh-hcccccceeeec
Confidence 9998 66777888888888887777765533 2 444433322110 000000000 11111111 111
Q ss_pred H----HHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013210 290 F----ELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 364 (447)
Q Consensus 290 ~----~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~ 364 (447)
. .............++................. ...... +.. ...++++|.+++......
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------rS~~vvsf~i~~~~~~~~ 311 (360)
T d1w23a_ 247 LRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE-KGS--------------RSLMNVTFNLRNEELNQQ 311 (360)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC-GGG--------------BCSSEEEEECSSHHHHHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCC-hhh--------------cceeEEEEEcCCCccHHH
Confidence 1 11111122222333334444444444443332 222111 100 122489999987766778
Q ss_pred HHHHhhcccccccccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013210 365 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 441 (447)
Q Consensus 365 l~~~l~~~~~~g~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~ 441 (447)
|...|... | |++.-|.. | -+.+|+|+- ...+.+.+++|.+++++..+
T Consensus 312 ~~~~l~~~---G-I~~~~G~~--------~-----------------~ggiRiS~~-~~~t~e~V~~Li~~~~~~~~ 358 (360)
T d1w23a_ 312 FLAKAKEQ---G-FVGLNGHR--------S-----------------VGGCRASIY-NAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp HHHHHHHT---T-EESCBCCT--------T-----------------TCSEEEECC-TTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC---C-CeeeeCCC--------c-----------------cCcEEEEee-CCCCHHHHHHHHHHHHHHHh
Confidence 88888764 3 55555521 0 134999997 77788899999999988764
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.61 E-value=5.1e-14 Score=136.34 Aligned_cols=305 Identities=15% Similarity=0.170 Sum_probs=194.1
Q ss_pred CCCCchhhHhhhcCCCCCCCCccccccccccccccCCH-HHHHHhhcCCCCC--CCCCccccCCCCchHHHHH----HHH
Q 013210 36 AAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEP-ETMRRMFAGELGP--DRDFFIYSRHFNPTVLNLS----RQM 108 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~-~~~~~~~~~~~~~--~~~~~~~~r~~~~~~~~l~----~~i 108 (447)
++..||+..-+--..... ..-.-++.+|-+++.+.+ +.+-..+.++|.- |...| |+ +...+.++| ++.
T Consensus 12 l~~~D~ei~~~i~~e~~r--q~~~l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ry-y~--G~~~iD~iE~la~~ra 86 (470)
T d1rv3a_ 12 LKDSDAEVYDIIKKESNR--QRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRY-YG--GTEHIDELETLCQKRA 86 (470)
T ss_dssp HHHHCHHHHHHHHHHHHH--HHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEES-SS--CCHHHHHHHHHHHHHH
T ss_pred HhhhCHHHHHHHHHHHHH--HHcCceEecCCCcCCHHHHHHhcchhcccccCCCCCccc-cC--CchhHHHHHHHHHHHH
Confidence 455566554333221111 122346678888887777 5555666665532 22112 11 234444444 445
Q ss_pred HHHhCCC----eE-EEeCChHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHhhcC--c----ccCeeEEEeCCC----
Q 013210 109 AALEGTE----AA-YCTASGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP--R----ACNITTTFVDIS---- 173 (447)
Q Consensus 109 a~l~g~~----~~-~~tsggt~A~~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~--~----~~g~~~~~v~~~---- 173 (447)
.+++|++ .+ +=.-||+.|+.+++.++++|||+|+..+..+++....- .... . ....+...++.+
T Consensus 87 ~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg-~~~~~~~~~~~~~~~~~~~y~v~~~~~ 165 (470)
T d1rv3a_ 87 LQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHG-FMTDKKKISATSIFFESMAYKVNPDTG 165 (470)
T ss_dssp HHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGC-CBCSSCBCSHHHHHSEEEEECBCTTTC
T ss_pred HHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCccccc-ccccCCCcccccceeEeeEEEEecccC
Confidence 7888876 22 33469999999999999999999999887766553221 0000 0 001234444332
Q ss_pred --CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC-CC-----CCCCccCCCCeEEEeCCC
Q 013210 174 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP-----LVLSPARLGADVVVHSIS 245 (447)
Q Consensus 174 --d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~-----~~~~~~~~g~di~~~S~s 245 (447)
|.+++++..+..++++|++-.-.+| ...|.+++.++|++.|+++++|.+| .+ ...+|.+. +|+++.|.|
T Consensus 166 ~IDyd~l~~~a~~~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~-aDvvt~tTH 242 (470)
T d1rv3a_ 166 YIDYDRLEENARLFHPKLIIAGTSCYS--RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH-CHVVTTTTH 242 (470)
T ss_dssp SBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT-CSEEEEESS
T ss_pred cccHHHHHHHHHhhCcceEeechhhcc--ccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhhe-eeeeeeehh
Confidence 8899998876678999998655544 5679999999999999999999998 33 34678765 699999999
Q ss_pred ccccCCCCeeEEEEEcCh---------------HHHHHHHHHhhhhhhhcCCCccHHHHHHH--HccC-CcHHHHHHHHH
Q 013210 246 KFISGGADIIAGAVCGPA---------------NLVNSMMDLHQGALMLLGPTMNPKVAFEL--SERI-PHLGLRMKEHC 307 (447)
Q Consensus 246 K~~g~~g~~igG~l~~~~---------------~~~~~l~~~~~~~~~~~g~~~~~~~a~~~--~~~~-~~l~~~~~~~~ 307 (447)
|.+.||- ||++..++ ++.+++..... .+...|+.+...+|.+. ...+ +.+.+..++..
T Consensus 243 KtlrGPr---gGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avF-Pg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv 318 (470)
T d1rv3a_ 243 KTLRGCR---AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVF-PGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVV 318 (470)
T ss_dssp GGGCCCS---CEEEEEECSBCC-------CCBCCHHHHHHHHHT-TTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred hhccCCc---ceEEEEccccccccccccchhHHHHHHHHhhhcC-ccccccchhhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 9998763 58887643 36666654432 11233444444444432 2222 24667788899
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013210 308 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN 371 (447)
Q Consensus 308 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~l~~~l~~ 371 (447)
++++.|++.|.+.|+++..-+-.. .++.+.+. +...++..+++..+
T Consensus 319 ~NAk~La~~L~~~G~~v~~ggTdn------------------Hlvlvdl~~~g~~g~~ae~~Le~~gI 368 (470)
T d1rv3a_ 319 ANCRALSAALVELGYKIVTGGSDN------------------HLILVDLRSKGTDGGRAEKVLEACSI 368 (470)
T ss_dssp HHHHHHHHHHHHTTCEEGGGSCSS------------------SEEEEEGGGGTCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHhCCceeccCCCCC------------------ceEEEeecccCCcHHHHHHHHHHcCc
Confidence 999999999999999876544222 27777774 34456666666553
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.57 E-value=7.9e-14 Score=138.36 Aligned_cols=245 Identities=16% Similarity=0.147 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhc----------------------------CCCCeEEEeCCCchh
Q 013210 101 VLNLSRQMAALEG--TEAAYCTASGMSAISSVLMQLC----------------------------SSGGHVVAARTLYGG 150 (447)
Q Consensus 101 ~~~l~~~ia~l~g--~~~~~~tsggt~A~~~al~~l~----------------------------~~gd~Vi~~~~~y~~ 150 (447)
.++|.+++.++.+ .+.++|++||+||+..|++... ....+||.....||+
T Consensus 102 a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG 181 (461)
T d1ohwa_ 102 VEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHG 181 (461)
T ss_dssp HHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCC
T ss_pred HHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCC
Confidence 4556665555543 4679999999999999997542 123479999999887
Q ss_pred HHHHHHh----------hcCcccCeeEEEeCC-----------------CCHHHHHHhhc-----cCCceEEEEEcCCCC
Q 013210 151 THALLTH----------FFPRACNITTTFVDI-----------------SDHEMVNSAIV-----QGRTKVLYFESISNP 198 (447)
Q Consensus 151 ~~~~~~~----------~~~~~~g~~~~~v~~-----------------~d~~~l~~~i~-----~~~t~lV~i~~~~Np 198 (447)
....... ..+. .+......+. .+.+++++.+. .+++.+|++|.++..
T Consensus 182 ~t~~a~s~tg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~ 260 (461)
T d1ohwa_ 182 RTMGCLATTHSKAIHKIDIPS-FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSE 260 (461)
T ss_dssp SSHHHHHTCCSCHHHHTTCCC-CCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCT
T ss_pred CCcccccccCCcccccccccc-cCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeecccccc
Confidence 5332211 1111 1111111110 02344554431 357889999999998
Q ss_pred CccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccCCC----CeEEEeCCCccccCCCCeeEEEEEcChHH
Q 013210 199 TLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARLG----ADVVVHSISKFISGGADIIAGAVCGPANL 265 (447)
Q Consensus 199 tG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-----~~~~g----~di~~~S~sK~~g~~g~~igG~l~~~~~~ 265 (447)
.|.+.+ +++|.++|++||+++|+||+++++... ...+| .|+++ ++|.+++ |++.....+
T Consensus 261 ~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~~------g~~~~~~~~ 332 (461)
T d1ohwa_ 261 GGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT------GGFFHKEEF 332 (461)
T ss_dssp TTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGSS------EEEEECGGG
T ss_pred ccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhh--hhhcccc------ccccccccc
Confidence 887764 889999999999999999999665321 11222 56775 7898874 233323222
Q ss_pred HHHHHHHhhhhhhhcCCCccHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccC
Q 013210 266 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE 345 (447)
Q Consensus 266 ~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~ 345 (447)
.. ...... ..+..|+.++..++.+.+..++. ...+++..+..++|.+.|+++.. .+|..-. +.
T Consensus 333 ~~-~~~~~~-~~T~~g~p~~~aaa~a~l~~i~~-~~l~~~~~~~g~~l~~~l~~l~~--~~~~~i~------------~v 395 (461)
T d1ohwa_ 333 RP-NAPYRI-FNTWLGDPSKNLLLAEVINIIKR-EDLLSNAAHAGKVLLTGLLDLQA--RYPQFIS------------RV 395 (461)
T ss_dssp SC-SSTTSS-CCSCSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHH--HCTTTCE------------EE
T ss_pred cc-cccccc-ccccccccccchhhcccchhhhh-hhHHHHHHHHHHHHHHHHHHHHh--hCCCceE------------Ee
Confidence 11 111111 22233444433344333333211 11334445555556666654311 0111000 12
Q ss_pred CCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013210 346 YGFGGLLCLDMETEEKANRLMNYLQN 371 (447)
Q Consensus 346 ~g~g~~~~~~l~~~~~~~~l~~~l~~ 371 (447)
.|.|.++.|++++.+.+.++...+..
T Consensus 396 rG~Gl~~~ie~~~~~~~~~i~~~~~~ 421 (461)
T d1ohwa_ 396 RGRGTFCSFDTPDESIRNKLISIARN 421 (461)
T ss_dssp EEETTEEEEECSSHHHHHHHHHHHHH
T ss_pred eeeeEEEEEEcCCHHHHHHHHHHHHH
Confidence 26788999999988777888888875
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=1.6e-12 Score=126.40 Aligned_cols=287 Identities=13% Similarity=0.125 Sum_probs=181.8
Q ss_pred chHHHHHHHHHHHhCCCeEEE-eCChHHHHHHHH-HHh-cCCCCeEEEeCCCchhHHHHHHhhcCcccCeeEEEeCCCCH
Q 013210 99 PTVLNLSRQMAALEGTEAAYC-TASGMSAISSVL-MQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDH 175 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~~~-tsggt~A~~~al-~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~ 175 (447)
..+-+++..|+++.|.+.+-+ ...|..|...++ ++. ....++++++...|+.++..+.....- .|++++.++.++.
T Consensus 108 q~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~-~g~~vv~v~~~~~ 186 (437)
T d1wyua1 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEA-VGAKLLTLPLEGG 186 (437)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHH-TTCEEEEECCBTT
T ss_pred HHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhccc-ceeeEEeeecccc
Confidence 345789999999999876432 234444444333 332 234578999999999998887555443 7999999887643
Q ss_pred HHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCcc------
Q 013210 176 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKF------ 247 (447)
Q Consensus 176 ~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~------ 247 (447)
......+ .+++.+|++++|| -.|.+.++++|.+++|+.|.++++|... -.....|.++|+|+++++ +|.
T Consensus 187 ~~~~~~~-~~~~Aavmi~~Pn-t~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g 263 (437)
T d1wyua1 187 RTPLPEV-GEEVGAVVVQNPN-FLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMG 263 (437)
T ss_dssp BCCCCCC-CTTEEEEEEESSC-TTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCG
T ss_pred cchhhhh-ccceeEEEEcccc-ccccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeec-cceeccccC
Confidence 3222235 6789999999995 5799999999999999999998888654 223346788899999888 444
Q ss_pred ccCCCCeeEEEEEcChHHHHHHHH-------------------------HhhhhhhhcCCCcc---HHH--HHHHHccCC
Q 013210 248 ISGGADIIAGAVCGPANLVNSMMD-------------------------LHQGALMLLGPTMN---PKV--AFELSERIP 297 (447)
Q Consensus 248 ~g~~g~~igG~l~~~~~~~~~l~~-------------------------~~~~~~~~~g~~~~---~~~--a~~~~~~~~ 297 (447)
+|||+ +|++.+++++...+-. .+....+..-.+.. ... +++...+-+
T Consensus 264 ~GGP~---~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~ 340 (437)
T d1wyua1 264 FGGPH---FGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPE 340 (437)
T ss_dssp GGCSC---CEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCc---cccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcc
Confidence 34444 3888888776544311 01100001111111 111 222333334
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013210 298 HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG 376 (447)
Q Consensus 298 ~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g 376 (447)
.+.+..++...++.++.+.|.+++ .++..+. + +-.-+.+.++. .+..+.++|.. +|
T Consensus 341 GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~----~--------------~f~ef~v~~~~--~~~~i~k~L~d---~G 397 (437)
T d1wyua1 341 GLREVALKSVEMAHKLHALLLEVPGVRPFTPK----P--------------FFNEFALALPK--DPEAVRRALAE---RG 397 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS----S--------------BCSEEEEECSS--CHHHHHHHHHH---TT
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcCCeeccCCC----C--------------eeeEEEEECCC--CHHHHHHHHHh---CC
Confidence 466666677889999999998874 4544332 1 11134455542 25667777765 33
Q ss_pred cccccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013210 377 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 439 (447)
Q Consensus 377 ~~~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~ 439 (447)
+.+ |. ...+ -+.++.+.|++. ..++++.|++|.++|+++
T Consensus 398 ~~~---~~----~~~~----------------~~~~~~lli~~T-E~~tkeeiD~~v~al~ei 436 (437)
T d1wyua1 398 FHG---AT----PVPR----------------EYGENLALFAAT-ELHEEEDLLALREALKEV 436 (437)
T ss_dssp CCC---CE----ECCT----------------TSCSSEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred CCC---Cc----cccc----------------CCCCCeEEEecC-CCCCHHHHHHHHHHHHHh
Confidence 321 10 0001 123578999999 889999999999999875
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| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.93 E-value=1.4e-08 Score=99.36 Aligned_cols=294 Identities=17% Similarity=0.133 Sum_probs=174.8
Q ss_pred chHHHHHHHHHHHhCCCeEE--EeCChHHHHHHHHHHh---cCCC----CeEEEeCCCchhHHHHHHhhcCcccCeeEEE
Q 013210 99 PTVLNLSRQMAALEGTEAAY--CTASGMSAISSVLMQL---CSSG----GHVVAARTLYGGTHALLTHFFPRACNITTTF 169 (447)
Q Consensus 99 ~~~~~l~~~ia~l~g~~~~~--~tsggt~A~~~al~~l---~~~g----d~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~ 169 (447)
..+-+++..|+++.|.+-+- ...|+|.+-.+++++. .+.+ ..++...+.++......... .+..+..
T Consensus 106 QalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 181 (471)
T d1wyub1 106 RLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASM----AGYQVRE 181 (471)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHH----TTCEEEE
T ss_pred HHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeec----ccceeec
Confidence 34678999999999987532 2344444444433332 1222 24455555555554443222 3445544
Q ss_pred eCCC-----CHHHHHHhhccCCceEEEEEcCCCCCccccCHHHHHHHHHhcCCEEEEeCCCCC---CCCCccCCCCeEEE
Q 013210 170 VDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP---LVLSPARLGADVVV 241 (447)
Q Consensus 170 v~~~-----d~~~l~~~i~~~~t~lV~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~---~~~~~~~~g~di~~ 241 (447)
++.+ +.+.+.... .+++..+++.+|++..+.....+++.+++++.+..+++|.+... ....|-..+.|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~-~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~ 260 (471)
T d1wyub1 182 IPSGPEGEVDLEALKREL-GPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVH 260 (471)
T ss_dssp ECBCTTSSBCHHHHHHHC-STTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEE
T ss_pred ccccccccccchhhhhhh-hccccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccccCcccccccc
Confidence 4432 788888777 77889999999988766656799999999999999999876421 23445566888888
Q ss_pred eCCCccccCC---CCeeEEEEEcChHHHHHHHHH--------------h-hhhhhhcCCCccHH---H--HHHHHccCCc
Q 013210 242 HSISKFISGG---ADIIAGAVCGPANLVNSMMDL--------------H-QGALMLLGPTMNPK---V--AFELSERIPH 298 (447)
Q Consensus 242 ~S~sK~~g~~---g~~igG~l~~~~~~~~~l~~~--------------~-~~~~~~~g~~~~~~---~--a~~~~~~~~~ 298 (447)
...++.+|.| |..-.|++..++++...+-.. + ++..+...++.... . .++.+.+-+.
T Consensus 261 vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~G 340 (471)
T d1wyub1 261 LNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEG 340 (471)
T ss_dssp CCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchh
Confidence 8888876543 222238888888876544210 0 00000111111111 1 2233334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013210 299 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM 378 (447)
Q Consensus 299 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~l~~~l~~~~~~g~~ 378 (447)
+.+.-++...++.++++.|+..+.++.+++ +... -+.+.++....+..+.++|.. +|++
T Consensus 341 L~elA~~~~~~A~Yla~~L~~~G~~~~~~~-~ff~-----------------EFvv~~~~~~~~~~i~k~L~~---~G~~ 399 (471)
T d1wyub1 341 LKKAAALAVLNARYLKELLKEKGYRVPYDG-PSMH-----------------EFVAQPPEGFRALDLAKGLLE---LGFH 399 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCBCSSCS-SCCS-----------------CEEEBCSTTCCHHHHHHHHHH---TTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCceeccCc-ceee-----------------EEeecCCCCCCHHHHHHHHHH---cCCC
Confidence 666667778999999999987776665443 1100 233444432234566677765 3432
Q ss_pred cccccCccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013210 379 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 442 (447)
Q Consensus 379 ~vs~G~~~s~~~~~a~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~ 442 (447)
+.+ ..+| ...++.+-|++. -.+++++||.|.++|+++.++
T Consensus 400 ~~~-------~~~p----------------~~~~~~llv~vT-E~~tkedID~lv~aL~~i~~e 439 (471)
T d1wyub1 400 PPT-------VYFP----------------LIVKEALMVEPT-ETEAKETLEAFAEAMGALLKK 439 (471)
T ss_dssp CCE-------ESCS----------------TTSTTCEEECCC-TTSCHHHHHHHHHHHHHHHTS
T ss_pred CCc-------ccCc----------------CCCCCeEEEecC-CCCCHHHHHHHHHHHHHHHHh
Confidence 210 0111 122466788888 888999999999999887653
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