Citrus Sinensis ID: 013215

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGANARILGSISGTNDSQWRGDRRADDGSITSVR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEccccccccccHHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcEEEEEcccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEEcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHEEEEEEHHHHHHEEEEEEEHEHHHHcccccccccHccccccccccccccccccccccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccEEEEEccccccccccccccccccEEEcccccccEEccccccccEEEEcccccccEEEEccccccccHHHHHHHHHHHccccccHHHccccccccccccccccccccccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
mdvpsaelhtetetetfpllmerpenvnnceHIIDITitdvsssnsthdrtsngldstrhedgssgssrnptsqpstsvngsntrnvaftrrgesrrrrsplnsglWISVELVLTLSQVVSAVVVLSVfrhehpraplfEWIVGYAAGCVATLPLLYWRYRqsnqvsepdsvqsrnssarlnapaapfsisvprtsevedhrapiashrggqntgvlsPRFKVLVEYFKMALDCFFAVWFVVGNVwifgghssaadapnLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGataesidalpTYKFklkksrssndrdnsssigdggvvaagtekervisgeDAVCCICLAkyanndelrelpcshffhkDCVDKWLkinascplcksevgdtvlgsISGANARILgsisgtndsqwrgdrraddgsitsvr
Flexible Loop (DISEMBL)
mdvpsaelhtetetetfpllmeRPENVNNCEHIIDItitdvsssnsthdrtsngldstrhedgssgssrnptsqpstsvngsntrnvaftrrgesrrrrsplnsglWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSsarlnapaapfsisvprtseVEDHRapiashrggqntgvlSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGataesidalptykfklkksrssndrdnsssigdggvvaagtEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGANARILgsisgtndsqwrgdrraddgsitsvr
Low Complexity Region (SEG)
MDVPSAELHTETETETFPLLMERPENVNNCEHiidititdvsssnstHDRTSNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFTrrgesrrrrsPLNSGLWISVElvltlsqvvsavvvlsvFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLkksrssndrdnsssIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGANARILGSISGTNDSQWRGDRRADDGSITSVR
Disordered region (IsUnstruct)
*************************NVNNCEHIIDITIT****************************************************************SGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYR*****************************************************GVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTY*******************************ERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGANARILGS************************
Disordered Region (DISOPRED)
******************LL**********************************************************************************NSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYR*******************************************************LSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILG*******************PTYKF********************************ISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV******************************************
Disordered Region (DISEMBL)
*************TETFPLLMERPENVNNCEHIIDITITDV****************************************SNTRNVAF************LNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQS*******************APAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFK***************IGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGANARILGSISG*********************
Disordered Region (DISPRO)
****************FPLLMERPENVNNCEHIIDITIT*************************************************************PLNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQ**************************************************VLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKS*************DGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT***************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRHEDGSSGSSRNPTSQPSTSVNGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGANARILGSISGTNDSQWRGDRRADDGSITSVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	447	2.2.26 [Sep-21-2011]
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.595	0.682	0.311	4e-36
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.635	0.696	0.311	8e-34
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.539	0.632	0.325	5e-31
Q8GUU2	359	E3 ubiquitin protein liga	no	no	0.583	0.727	0.299	6e-30
Q08CG8	448	RING finger protein 44 OS	yes	no	0.192	0.191	0.318	1e-12
E9QAU8	347	RING finger protein 165 O	yes	no	0.232	0.299	0.330	5e-12
Q6ZSG1	346	RING finger protein 165 O	yes	no	0.232	0.300	0.330	6e-12
Q9H0F5	515	RING finger protein 38 OS	no	no	0.192	0.166	0.310	1e-11
Q8BI21	518	RING finger protein 38 OS	no	no	0.192	0.166	0.310	2e-11
Q7L0R7	432	RING finger protein 44 OS	no	no	0.192	0.199	0.310	3e-11

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 39/305 (12%)

Query: 108 ISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVS 167
           + ++++  L+ V   V VL + R E P  PL  W+VGY   C   +  +   YR+  +  
Sbjct: 110 VFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRRRRRRR 169

Query: 168 EPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEY 227
            P+        + L   ++   +S+ +  +  +   P A H    NT             
Sbjct: 170 HPED----GGGSGLTNSSSQQYVSLAQLEDRGETSNP-AKHLESANTM------------ 212

Query: 228 FKMALDCFFAVWFVVGNVWI-FGGHSSAADAPNLYRLCIVFLAISCIGY----AMPFILC 282
                  F  +W+++G  W+  GG + ++D+P LY LCI+FL           A+  ++ 
Sbjct: 213 -------FSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIG 265

Query: 283 ATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGG 342
             +CCCLPCI++IL     +A   GA+   ID +P ++F       + + +  S    G 
Sbjct: 266 LAVCCCLPCIIAIL---YAVADQEGASKNDIDQMPKFRFT-----KTGNVEKLSGKARGI 317

Query: 343 VVAAGTEK--ERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPL 400
           +   GT+   ER +S EDA CCICL +Y +  ELRELPC+H FH  C+DKWL IN+ CPL
Sbjct: 318 MTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPL 377

Query: 401 CKSEV 405
           CK  +
Sbjct: 378 CKFNI 382

Mediates E2-dependent protein ubiquitination in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score =  145 bits (365), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 156/311 (50%), Gaps = 27/311 (8%)

Query: 108 ISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVS 167
           + +++V  L+ V  A  +L + R EHP  PL  W++GYA  CV  +  +   YR+ N+  
Sbjct: 101 VVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRR 160

Query: 168 EPDSVQSRNSSARLNAPAAPF------SISVPRTSEVEDHRAPIASHRGGQNTGVLSPRF 221
              +  +    +R ++ ++        ++   R S V+D            + G L    
Sbjct: 161 TNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQD-----------LSLGHLDTES 209

Query: 222 KVLVEYFKMALDCFFAVWFVVGNVWI-FGGHSSAADAPNLYRLCIVFLAISCIGY----A 276
             + ++ + A   F  +W+++G  W+  GG   A ++P +Y L IVFL           A
Sbjct: 210 SSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVA 269

Query: 277 MPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSS 336
           +  ++   +CCCLPCI+++L     +A   GA+ E I+ L  +KF+     + +  D + 
Sbjct: 270 LACVIGIAVCCCLPCIIAVL---YAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQ 326

Query: 337 SIGDGGVVAAGTEK--ERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI 394
              +G +   GT+   E  +  EDA CCICL+ Y +  ELRELPC H FH  CVDKWL I
Sbjct: 327 GTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYI 386

Query: 395 NASCPLCKSEV 405
           NA+CPLCK  +
Sbjct: 387 NATCPLCKYNI 397

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score =  135 bits (341), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 139/304 (45%), Gaps = 63/304 (20%)

Query: 132 EHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQ--------------------VSEPDS 171
           E+P  PL  WI+GY   C+  +  +   YR+ N                     + E + 
Sbjct: 99  ENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEG 158

Query: 172 VQ-SRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKM 230
           +  SRNS  R                ++E+     A H    NT         ++ +   
Sbjct: 159 LGLSRNSDERY-----------LELGQLENENNSFAKHLESANT---------MISF--- 195

Query: 231 ALDCFFAVWFVVGNVWIF-GGHSSAADAPNLYRLCIVFLAISCIGY----AMPFILCATI 285
                  +W+V+G  W+  GG   A  +P LY LCIVFL           A+  ++   +
Sbjct: 196 -------IWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAV 248

Query: 286 CCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGD-GGVV 344
           CCCLPCI+++L     +A+  GA+ E ID L  +KF+       +  D     GD GGV+
Sbjct: 249 CCCLPCIIAVLYA---VAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVM 305

Query: 345 A-AGTEK--ERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLC 401
              GT+   E  +  EDA CCICL+ Y +  ELRELPC H FH  CVDKWL INA+CPLC
Sbjct: 306 TECGTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLC 365

Query: 402 KSEV 405
           K  +
Sbjct: 366 KYNI 369

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score =  132 bits (332), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 144/311 (46%), Gaps = 50/311 (16%)

Query: 108 ISVELVLTLSQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLL---YWRYRQSN 164
           ++ +++   + V+++ V+L     E P  P+  WI  Y   C+  + L+   YWR     
Sbjct: 78  VAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWR----- 132

Query: 165 QVSEPDSVQSRNSSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVL 224
                     RNS+ R             R  E  DH      +   Q++   S  +  +
Sbjct: 133 ----------RNSTRR------------ARDLESYDHEDYNIEYDYEQDSDDNSTTYSFV 170

Query: 225 VEYFKMALDCFFAVWFVVGNVWIF-GGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCA 283
                +     F +W+++G  W+  GG     +APNLY L ++FLAI         +L  
Sbjct: 171 KRCESINTVISF-IWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLAC 229

Query: 284 TI----CCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIG 339
            +    CCCLPCI+++L     +A T G +   +  LP YKF   K+  SN+++ +   G
Sbjct: 230 LVGIALCCCLPCIIALL---YAVAGTEGVSEAELGVLPLYKF---KAFHSNEKNIT---G 280

Query: 340 DGGVV-----AAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI 394
            G +V           ER +  EDA CCICL+ Y +  EL  LPC+H FH  C+ KWLK+
Sbjct: 281 PGKMVPIPINGLCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKM 340

Query: 395 NASCPLCKSEV 405
            A+CPLCK  +
Sbjct: 341 RATCPLCKYNI 351

Probable E3 ubiquitin-protein ligase required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 30/116 (25%)

Query: 294 SILGLREDL--AQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKE 351
           ++L L E L  A+ RG T   I+ LP+Y+F L+  +S                       
Sbjct: 355 ALLNLAERLGEAKPRGLTKADIEQLPSYRFNLENHQS----------------------- 391

Query: 352 RVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD 407
                E  +C +C + + +   LR LPC+H FH  CVDKWLK N +CP+C+++  +
Sbjct: 392 -----EQTLCVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRADASE 442

Danio rerio (taxid: 7955)

>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 17/121 (14%)

Query: 295 ILGLREDLAQ-TRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERV 353
           +L L + L   TRGA   +I+   T+  K KK R  + +              G + E  
Sbjct: 243 LLQLEDRLGNVTRGAVQNTIERF-TFPHKYKKRRPQDSK--------------GKKDEGE 287

Query: 354 ISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSI 413
            S  D  C ICL+   + +++R LPC H FH+ CVD+WL ++  CP+C+ ++ +T LG+ 
Sbjct: 288 ESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI-ETQLGAD 346

Query: 414 S 414
           S
Sbjct: 347 S 347

Mus musculus (taxid: 10090)

>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 17/121 (14%)

Query: 295 ILGLREDLAQ-TRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERV 353
           +L L + L   TRGA   +I+   T+  K KK R  + +              G + E  
Sbjct: 242 LLQLEDRLGNVTRGAVQNTIERF-TFPHKYKKRRPQDGK--------------GKKDEGE 286

Query: 354 ISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSI 413
            S  D  C ICL+   + +++R LPC H FH+ CVD+WL ++  CP+C+ ++ +T LG+ 
Sbjct: 287 ESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI-ETQLGAD 345

Query: 414 S 414
           S
Sbjct: 346 S 346

Homo sapiens (taxid: 9606)

>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 30/116 (25%)

Query: 294 SILGLREDL--AQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKE 351
           ++L L E L  A+ RG T   I+ LP+Y+F     +S                       
Sbjct: 422 ALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQS----------------------- 458

Query: 352 RVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD 407
                E  +C +C+  + +   LR LPC+H FH  CVDKWLK N +CP+C+++  +
Sbjct: 459 -----EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASE 509

Homo sapiens (taxid: 9606)

>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 30/116 (25%)

Query: 294 SILGLREDL--AQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKE 351
           ++L L E L  A+ RG T   I+ LP+Y+F     +S                       
Sbjct: 425 ALLNLAERLGEAKPRGLTKADIEQLPSYRFNPSNHQS----------------------- 461

Query: 352 RVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD 407
                E  +C +C+  + +   LR LPC+H FH  CVDKWLK N +CP+C+++  +
Sbjct: 462 -----EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRADASE 512

Mus musculus (taxid: 10090)

>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 30/116 (25%)

Query: 294 SILGLREDL--AQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKE 351
           ++L L E L  A+ RG T   I+ LP+Y+F     +S                       
Sbjct: 339 ALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQS----------------------- 375

Query: 352 RVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD 407
                E  +C +C + +     LR LPC+H FH  CVDKWLK N +CP+C+++  +
Sbjct: 376 -----EQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASE 426

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
224092390	406	predicted protein [Populus trichocarpa]	0.906	0.997	0.738	1e-171
224143048	434	predicted protein [Populus trichocarpa]	0.923	0.951	0.731	1e-170
255551132	437	ring finger protein, putative [Ricinus c	0.930	0.951	0.708	1e-167
449442204	424	PREDICTED: E3 ubiquitin-protein ligase A	0.932	0.983	0.725	1e-164
359476391	421	PREDICTED: E3 ubiquitin-protein ligase A	0.928	0.985	0.685	1e-157
296081927	401	unnamed protein product [Vitis vinifera]	0.883	0.985	0.697	1e-150
356554344	440	PREDICTED: E3 ubiquitin-protein ligase A	0.948	0.963	0.595	1e-144
356561942	441	PREDICTED: E3 ubiquitin-protein ligase A	0.950	0.963	0.606	1e-143
359482955	416	PREDICTED: E3 ubiquitin-protein ligase A	0.845	0.908	0.629	1e-141
297802754	489	hypothetical protein ARALYDRAFT_328473 [	0.950	0.869	0.633	1e-140

>gi|224092390|ref|XP_002309588.1| predicted protein [Populus trichocarpa] gi|222855564|gb|EEE93111.1| predicted protein [Populus trichocarpa]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 302/409 (73%), Positives = 343/409 (83%), Gaps = 4/409 (0%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRH 60
           MDVPS ELH+E++T+TFPLLMERPEN+N+  HIIDI        + +HDR S+GL+++ H
Sbjct: 1   MDVPSTELHSESQTDTFPLLMERPENLNSSAHIIDIPRNIEVPGSPSHDRISSGLEASSH 60

Query: 61  EDGSSGSSRNPTSQPSTSV-NGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQV 119
           ED  S   R P++QPSTS+ NG+N+R+ +  RRGE+RRRRSPLNSGLWISVELVLTLSQ+
Sbjct: 61  EDRPSSGVRAPSTQPSTSLSNGTNSRSSSLIRRGEARRRRSPLNSGLWISVELVLTLSQI 120

Query: 120 VSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSA 179
           V+++VVLSV RHEHP APLF WIVGYA+GCVATLPLLYWRYR  NQ  E DS Q+   SA
Sbjct: 121 VASIVVLSVSRHEHPHAPLFAWIVGYASGCVATLPLLYWRYRYRNQSLEQDSAQNHQGSA 180

Query: 180 RLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVW 239
            +N PA PFS+SV R SE +D R+   S RG QN  VL+ R KVLVEYFKMALDCFFAVW
Sbjct: 181 HINVPAGPFSLSVSRNSESDDRRSATTSPRGSQN-AVLNARLKVLVEYFKMALDCFFAVW 239

Query: 240 FVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLR 299
           FVVGNVWIFGGHSSA +APNLYRLCIVFL  SCIGYAMPFILCATICCCLPCI+S+LG R
Sbjct: 240 FVVGNVWIFGGHSSAEEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGYR 299

Query: 300 EDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDA 359
           EDL QTRGAT ESIDALPTYKFKL K+R  N  D+S+   DGGVVAAGTEKERVISGEDA
Sbjct: 300 EDLTQTRGATTESIDALPTYKFKLIKNR--NGEDSSAGASDGGVVAAGTEKERVISGEDA 357

Query: 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408
           VCCICLAK+ANNDELRELPCSHFFHK+CVDKWLKINASCPLCKSEVG++
Sbjct: 358 VCCICLAKFANNDELRELPCSHFFHKECVDKWLKINASCPLCKSEVGES 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143048|ref|XP_002324833.1| predicted protein [Populus trichocarpa] gi|222866267|gb|EEF03398.1| predicted protein [Populus trichocarpa]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 308/421 (73%), Positives = 347/421 (82%), Gaps = 8/421 (1%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRH 60
           MDV S ELH+E +T+TFPLLMER EN N+ EHIIDI   +VS S S H+R S GL+++ H
Sbjct: 1   MDVASTELHSENQTDTFPLLMERQENPNSSEHIIDIR-NEVSVSPS-HNRISTGLEASLH 58

Query: 61  EDGSSGSSRNPTSQPSTSV-NGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQV 119
           ED      R PTS P TS+ NG+N+R+ +  RRGE+RRRRSPLNSGLWISVELVLTLSQ+
Sbjct: 59  EDRPLSGVRAPTSPPPTSLSNGTNSRSSSLIRRGEARRRRSPLNSGLWISVELVLTLSQI 118

Query: 120 VSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSA 179
           ++++VVLSV R EHPRAPLF WIVGYA+GCVATLPLLYWRY   NQ  E DS Q+   SA
Sbjct: 119 IASIVVLSVSRKEHPRAPLFAWIVGYASGCVATLPLLYWRYSHRNQALEQDSAQNHQGSA 178

Query: 180 RLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRF--KVLVEYFKMALDCFFA 237
            +N PA PFS+SV R SE ED R+   S RGGQN  VL+ R+  KVL+EYFKMALDCFFA
Sbjct: 179 HINVPAGPFSLSVSRNSEGEDRRSATTSPRGGQN-AVLNARYELKVLLEYFKMALDCFFA 237

Query: 238 VWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILG 297
           VWFVVGNVWIFG HSSA +APNLYRLCIVFL  SCIGYAMPFILCATICCCLPCI+SILG
Sbjct: 238 VWFVVGNVWIFGSHSSAEEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILG 297

Query: 298 LREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGE 357
            REDL QTRGAT ESIDALPT+KFKL K+R  N  D+SS   DGG+VAAGTEKERVISGE
Sbjct: 298 FREDLTQTRGATPESIDALPTHKFKLIKNR--NGEDSSSGAADGGIVAAGTEKERVISGE 355

Query: 358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGAN 417
           DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG+++LGS+ G N
Sbjct: 356 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGESILGSLPGLN 415

Query: 418 A 418
           +
Sbjct: 416 S 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551132|ref|XP_002516614.1| ring finger protein, putative [Ricinus communis] gi|223544434|gb|EEF45955.1| ring finger protein, putative [Ricinus communis]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 297/419 (70%), Positives = 349/419 (83%), Gaps = 3/419 (0%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRH 60
           MDV S E H+E+ T+T PLLME+  ++N+ EHIIDI  +  SS +++HDRT++GL+++ +
Sbjct: 1   MDVSSTEQHSESLTDTCPLLMEQSNSINSSEHIIDIPRSSDSSPSTSHDRTTSGLEASSN 60

Query: 61  EDGSSGSSRNPT-SQPSTSV-NGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQ 118
           ED  + S R P+ S  ST   NGSNTRN +  RRGE+RRRRSPLNSGLWISVELVLT+SQ
Sbjct: 61  EDRPTTSVRTPSISHLSTGTSNGSNTRNSSLIRRGEARRRRSPLNSGLWISVELVLTVSQ 120

Query: 119 VVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSS 178
           +++++VVLS+ RHEHPRAPLF WIVGYA+GCVATLPLLYWRYR  NQV+E ++ Q R SS
Sbjct: 121 IIASIVVLSLSRHEHPRAPLFAWIVGYASGCVATLPLLYWRYRHRNQVTEQEAAQPRQSS 180

Query: 179 ARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAV 238
              + P    SIS+ R SEV D R+   S RGGQN+G L+ R K LVEYFKMALDCFFAV
Sbjct: 181 -HFSVPGDSISISITRNSEVVDRRSSSTSSRGGQNSGALNARLKTLVEYFKMALDCFFAV 239

Query: 239 WFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGL 298
           WFVVGNVWIFGGHSSA +APN+YRLCIVFL  SCIGYAMPFILCATICCCLPCI+S+LG 
Sbjct: 240 WFVVGNVWIFGGHSSATEAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISLLGF 299

Query: 299 REDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGED 358
           REDL QTRGAT+ESIDALPTYKFKL K R+ +DRD++S  GDGGVVAAGTE ER ISGED
Sbjct: 300 REDLGQTRGATSESIDALPTYKFKLNKHRTGDDRDSNSGAGDGGVVAAGTEHERFISGED 359

Query: 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGAN 417
           AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCK+EVG++V+GS++  N
Sbjct: 360 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKTEVGESVMGSLTATN 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442204|ref|XP_004138872.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Cucumis sativus] gi|449499624|ref|XP_004160867.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Cucumis sativus]

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 304/419 (72%), Positives = 356/419 (84%), Gaps = 2/419 (0%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDIT-ITDVSSSNSTHDRTSNGLDSTR 59
           MDVPS EL+ ++E +++PLLM RPE+ N+ EHIIDIT   D   S   H R+SNGL+S++
Sbjct: 1   MDVPSVELNCDSEGDSYPLLMARPEHSNSSEHIIDITGAGDSGPSGLPHGRSSNGLNSSQ 60

Query: 60  HEDGSSGSSRNPTSQPSTSVNGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQV 119
            ED  S S+R P SQPSTS  GSN+RN +F RRG++RRRRSPLNSGLWIS+EL+LT+SQ+
Sbjct: 61  PEDRPSSSTRVPLSQPSTSSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQI 120

Query: 120 VSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSA 179
           ++A++VLS+ ++E PRAPLF WIVGYA+GC ATLPLLYWRYR  NQ SE DS+QS  SS+
Sbjct: 121 IAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDSLQSSQSSS 180

Query: 180 RLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVW 239
           R+N PA PFS+SV R SE E+ + P  S RG Q +GVLS R KVLVEYFKM LDCFFAVW
Sbjct: 181 RINVPAGPFSLSVSRASEGEELQHPAPSPRGSQGSGVLSARLKVLVEYFKMGLDCFFAVW 240

Query: 240 FVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLR 299
           FVVGNVWIFGGHSSA++APNLYRLCIVFL  SCIGYAMPFILC TICCCLPCI+SILG R
Sbjct: 241 FVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFR 300

Query: 300 EDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSS-SIGDGGVVAAGTEKERVISGED 358
           EDL+QTRGAT+ESI+ALPTYKFKLKKSRS +DR+N+S +   GGVVAAGTEKERVISGED
Sbjct: 301 EDLSQTRGATSESINALPTYKFKLKKSRSGDDRENNSGAGEGGGVVAAGTEKERVISGED 360

Query: 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGAN 417
           AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA CPLCK+EVG++++GS+ G N
Sbjct: 361 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKAEVGESIVGSLEGTN 419

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476391|ref|XP_002284536.2| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Vitis vinifera]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 286/417 (68%), Positives = 340/417 (81%), Gaps = 2/417 (0%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDIT-ITDVSSSNSTHDRTSNGLDSTR 59
           M +PS ELH++++++ +PLLME+P N  + EHIIDIT   D SSSNS++D  S  LD  +
Sbjct: 1   MAIPSLELHSKSQSDIYPLLMEQPGNQIDTEHIIDITRSGDASSSNSSNDGPSTSLDQLQ 60

Query: 60  HEDGSSGSSRNPTSQPSTSVNGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQV 119
           H+D  + S+R P SQPS S +  +    +F RR ++RRRRSPLNSGLWIS+EL LT+SQ+
Sbjct: 61  HDDRPASSARVPISQPSFSSSNVSNSRNSFRRRADARRRRSPLNSGLWISIELALTVSQI 120

Query: 120 VSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSA 179
           +++VVVLS+ RHEHP APLF WIVGYA+GCVATLP+LYWR+R  NQ  E +S QSR  S 
Sbjct: 121 IASVVVLSLSRHEHPHAPLFTWIVGYASGCVATLPILYWRFRHRNQGHEQESAQSRQVSF 180

Query: 180 RLNAPAAP-FSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAV 238
             N P  P FS+SV  TSE ED +  + + R  Q+   LS R KVLVEYFKMALDCFFAV
Sbjct: 181 HSNLPGGPTFSLSVTGTSEEEDRQPSVPATRNSQSVRRLSARLKVLVEYFKMALDCFFAV 240

Query: 239 WFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGL 298
           WFVVGNVWIFGGHSS+++APNLYRLCIVFL  SCIGYAMPFILCATICCCLPCI+SILG 
Sbjct: 241 WFVVGNVWIFGGHSSSSEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGF 300

Query: 299 REDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGED 358
           REDL QTRGAT+ESI+ALPTYKFKLKK+R+ +DR+ +S  G+GGVVAAGTE+ERVISGED
Sbjct: 301 REDLTQTRGATSESINALPTYKFKLKKNRNGDDREGNSGAGEGGVVAAGTERERVISGED 360

Query: 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISG 415
           AVCCICLAKYANNDELRELPCSHFFHK+CVDKWLKINA CPLCK EVG++ LGS+SG
Sbjct: 361 AVCCICLAKYANNDELRELPCSHFFHKECVDKWLKINALCPLCKREVGESFLGSLSG 417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081927|emb|CBI20932.3| unnamed protein product [Vitis vinifera]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 277/397 (69%), Positives = 323/397 (81%), Gaps = 2/397 (0%)

Query: 21  MERPENVNNCEHIIDIT-ITDVSSSNSTHDRTSNGLDSTRHEDGSSGSSRNPTSQPSTSV 79
           ME+P N  + EHIIDIT   D SSSNS++D  S  LD  +H+D  + S+R P SQPS S 
Sbjct: 1   MEQPGNQIDTEHIIDITRSGDASSSNSSNDGPSTSLDQLQHDDRPASSARVPISQPSFSS 60

Query: 80  NGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQVVSAVVVLSVFRHEHPRAPLF 139
           +  +    +F RR ++RRRRSPLNSGLWIS+EL LT+SQ++++VVVLS+ RHEHP APLF
Sbjct: 61  SNVSNSRNSFRRRADARRRRSPLNSGLWISIELALTVSQIIASVVVLSLSRHEHPHAPLF 120

Query: 140 EWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAP-FSISVPRTSEV 198
            WIVGYA+GCVATLP+LYWR+R  NQ  E +S QSR  S   N P  P FS+SV  TSE 
Sbjct: 121 TWIVGYASGCVATLPILYWRFRHRNQGHEQESAQSRQVSFHSNLPGGPTFSLSVTGTSEE 180

Query: 199 EDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAADAP 258
           ED +  + + R  Q+   LS R KVLVEYFKMALDCFFAVWFVVGNVWIFGGHSS+++AP
Sbjct: 181 EDRQPSVPATRNSQSVRRLSARLKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSSSEAP 240

Query: 259 NLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPT 318
           NLYRLCIVFL  SCIGYAMPFILCATICCCLPCI+SILG REDL QTRGAT+ESI+ALPT
Sbjct: 241 NLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGFREDLTQTRGATSESINALPT 300

Query: 319 YKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELP 378
           YKFKLKK+R+ +DR+ +S  G+GGVVAAGTE+ERVISGEDAVCCICLAKYANNDELRELP
Sbjct: 301 YKFKLKKNRNGDDREGNSGAGEGGVVAAGTERERVISGEDAVCCICLAKYANNDELRELP 360

Query: 379 CSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISG 415
           CSHFFHK+CVDKWLKINA CPLCK EVG++ LGS+SG
Sbjct: 361 CSHFFHKECVDKWLKINALCPLCKREVGESFLGSLSG 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554344|ref|XP_003545507.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 265/445 (59%), Positives = 337/445 (75%), Gaps = 21/445 (4%)

Query: 3   VPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNST--HDRTSNGLDSTRH 60
           V S  L  E  + T PLLMER  ++N+ +H+I+I  +  +S++S   HDR  NG + T+H
Sbjct: 5   VVSLNLCLEGSSGTLPLLMERSGSLNSSQHVIEIAGSADASTSSASHHDRHFNGTNVTQH 64

Query: 61  EDGSSGSSRNPTSQPSTSVNGSNTRNVA----FTRRGESRRRRSPLNSGLWISVELVLTL 116
           E+  SG+ R P SQPS S    +  + +    F RRG++RR RSP++SGLWIS+ELVL L
Sbjct: 65  EERISGA-RMPLSQPSVSATSVSNGSNSRNSSFIRRGDTRRNRSPVHSGLWISIELVLLL 123

Query: 117 SQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRN 176
           SQ+V++++VLS+ RHEHPR PLF+WI+GYA+GC ATLPLLYWRY   N + E +S QSR 
Sbjct: 124 SQIVASIIVLSLSRHEHPRTPLFQWIIGYASGCAATLPLLYWRYYHHNHMQEQESSQSRQ 183

Query: 177 SSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFF 236
           +S R+N P+     S  RT+  ED ++ +AS R  Q + +++ R K LVEYFK++LDCFF
Sbjct: 184 TSPRINDPSGTLLFS-SRTNGGEDGQSAVASSRSNQPSLLMNRRMKTLVEYFKISLDCFF 242

Query: 237 AVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSIL 296
           AVWFVVGNVWIFGGHSSA +APNLYRLCIVFLA SCIGYAMPFI C+TICCCLPCI+SIL
Sbjct: 243 AVWFVVGNVWIFGGHSSANEAPNLYRLCIVFLAFSCIGYAMPFIFCSTICCCLPCIISIL 302

Query: 297 GLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISG 356
           G+RED++Q RGAT+ESI+ALP YKFK+KK++   + + +S+  +GGVVAAGTEKE VISG
Sbjct: 303 GVREDMSQNRGATSESINALPIYKFKMKKNK--RNGNGNSAAAEGGVVAAGTEKEHVISG 360

Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGA 416
           EDAVCCICLAKY NNDELRELPCSH FHKDCVDKWLKINA CPLCKS+VG+ + GS+SG 
Sbjct: 361 EDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSDVGENLTGSVSGE 420

Query: 417 NARILGSISGTNDSQWRGDRRADDG 441
           +A           SQ +G+ R ++G
Sbjct: 421 DA-----------SQQQGESRVENG 434

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561942|ref|XP_003549235.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/445 (60%), Positives = 335/445 (75%), Gaps = 20/445 (4%)

Query: 3   VPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNST--HDRTSNGLDSTRH 60
           V S EL  E  + T PLLM RP ++N  +H+I+I  +  +S++S   HDR  NG D T+H
Sbjct: 5   VVSLELCLEGSSYTLPLLMARPGSLNGSQHVIEIAGSAYASTSSASHHDRHFNGTDVTQH 64

Query: 61  EDGSSGSSRNPTSQPSTSVNGSNTRNVA----FTRRGESRRRRSPLNSGLWISVELVLTL 116
           E+  SG+   P SQPS S    +  + +    F RRG++RR RSP++SGLWIS+ELVL +
Sbjct: 65  EERISGARMPPLSQPSVSATSVSNGSNSRNSSFIRRGDTRRNRSPVHSGLWISIELVLLV 124

Query: 117 SQVVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRN 176
           SQ+V++++VLS+ RHEHPR PLF WI+GYA+GC ATLPLLYWRY   N + E DS QSR 
Sbjct: 125 SQIVASIIVLSLSRHEHPRTPLFHWIIGYASGCAATLPLLYWRYYHHNHMREQDSSQSRQ 184

Query: 177 SSARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFF 236
           SS R+N P+     S  RT+  ED +A +AS R  Q + +++ R K LVEYFK++LDCFF
Sbjct: 185 SSPRINDPSGTLLFS-SRTNSGEDGQAAVASSRSNQASLLMNRRMKTLVEYFKISLDCFF 243

Query: 237 AVWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSIL 296
           AVWFVVGNVWIFGGHSS  +APNLYRLCIVFLA SCIGYAMPFILC+TICCCLPCI+SIL
Sbjct: 244 AVWFVVGNVWIFGGHSSVEEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISIL 303

Query: 297 GLREDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISG 356
           G+RED++Q RGA +ESI+ALP YKFK KK++ +   D++S+  +GGVVAAGTEKERVISG
Sbjct: 304 GVREDMSQNRGAASESINALPIYKFKTKKNKRNG--DSNSAAAEGGVVAAGTEKERVISG 361

Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGA 416
           EDAVCCICLAKY NNDELRELPCSH FHKDCVDKWLKINA CPLCKS+VG+ + GS+SG 
Sbjct: 362 EDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSDVGENLTGSVSGE 421

Query: 417 NARILGSISGTNDSQWRGDRRADDG 441
           +A           SQ RG+ R ++G
Sbjct: 422 DA-----------SQQRGESRVENG 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482955|ref|XP_002280466.2| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Vitis vinifera] gi|297743322|emb|CBI36189.3| unnamed protein product [Vitis vinifera]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 258/410 (62%), Positives = 309/410 (75%), Gaps = 32/410 (7%)

Query: 1   MDVPSAELHTETETETFPLLMERPENVNNCEHIIDITITDVSSSNSTHDRTSNGLDSTRH 60
           M +PS E H+ ++T  +PLLMER EN  + EHIIDIT  D +SS+S+HD     ++  +H
Sbjct: 1   MAIPSLEPHSGSQTYKYPLLMERTENHGDREHIIDITRNDDASSSSSHDDHHPVMNPPQH 60

Query: 61  EDGSSGSSRNPTSQPSTSVNGSNTRNVAFTRR--GESRRRRSPLNSGLWISVELVLTLSQ 118
           E+  S S++ PT+Q  TS N  N+RN +F RR  G SRRRRSPLNSGLWISVELV+T+SQ
Sbjct: 61  EERPSSSTQTPTNQ--TSSNRLNSRNSSFMRRSDGYSRRRRSPLNSGLWISVELVVTVSQ 118

Query: 119 VVSAVVVLSVFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSS 178
           +++++VVLS+ RHE+PRAPLF W+VGYA+GC ATLP+LYWRYR  NQ             
Sbjct: 119 IIASIVVLSLSRHENPRAPLFAWVVGYASGCFATLPILYWRYRTRNQ------------- 165

Query: 179 ARLNAPAAPFSISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAV 238
                     +ISV + SE        A+ R  +  G+   RF  +V++FKMALDCFFAV
Sbjct: 166 ----------TISVNQASETAG-----AATRRSRFVGIFRMRFSGMVDHFKMALDCFFAV 210

Query: 239 WFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGL 298
           WFVVGNVWIFGGHSS +DAP LYRLCIVFL  SCIGYAMPFILCATICCCLPCI+SILG 
Sbjct: 211 WFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGF 270

Query: 299 REDLAQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGED 358
           REDL+QTRGA  ESIDALPTYKFKLKK+   +D++ +S  G+GGV+AAGTEKER ISGED
Sbjct: 271 REDLSQTRGAAPESIDALPTYKFKLKKNGDVDDQEVNSGAGEGGVLAAGTEKERAISGED 330

Query: 359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408
           AVCCICLAKYA+N+ELRELPC HFFH +CVDKWLKINA CPLCK EVG T
Sbjct: 331 AVCCICLAKYADNEELRELPCCHFFHVECVDKWLKINALCPLCKFEVGGT 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802754|ref|XP_002869261.1| hypothetical protein ARALYDRAFT_328473 [Arabidopsis lyrata subsp. lyrata] gi|297315097|gb|EFH45520.1| hypothetical protein ARALYDRAFT_328473 [Arabidopsis lyrata subsp. lyrata]

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 280/442 (63%), Positives = 327/442 (73%), Gaps = 17/442 (3%)

Query: 13  ETETFPLLMER-PEN-VNNCEHII-DITI-TDVSSSNSTHDRTSNGLDSTRHEDGSSGSS 68
           + +TF   MER PEN ++  EHII DI     ++SS+S+HDR SN L+  +HED    S+
Sbjct: 15  QADTFSRFMERSPENNLSRNEHIIIDIPRNAAIASSSSSHDRISNVLEPLQHEDDRP-ST 73

Query: 69  RNPTSQPSTSVNGSNTRNVAFTRRGESRRRRSPLNSGLWISVELVLTLSQVVSAVVVLSV 128
             P S P  +   +++ +   +     RRRRSPLNSGLWIS+EL LT+ Q+++A+VVLS+
Sbjct: 74  VPPMSAPQPATATASSSSSMRSNPRSVRRRRSPLNSGLWISIELFLTVGQIIAAIVVLSL 133

Query: 129 FRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPF 188
            +HEHPRAPLF WIVGYA GCVATLPLLYWRY  SNQ SE DS Q R     LN  A PF
Sbjct: 134 SKHEHPRAPLFTWIVGYACGCVATLPLLYWRYYHSNQASEQDSGQHR---PNLNVAAGPF 190

Query: 189 SISVPRTSEVEDHRAPIASHRGGQNTGVLSP-RFKVLVEYFKMALDCFFAVWFVVGNVWI 247
           + S+ RTSE +  +    S R  +  G +S  R KV+VEYFKMALDCFFAVWFVVGNVWI
Sbjct: 191 AFSISRTSEGDGRQTNTTSSRVSRYPGFISAARLKVIVEYFKMALDCFFAVWFVVGNVWI 250

Query: 248 FGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRG 307
           FGGHSSAA+APNLYRLC+VFL  SCIGYAMPFILC TICCCLPCI+SILG REDL Q RG
Sbjct: 251 FGGHSSAAEAPNLYRLCLVFLTFSCIGYAMPFILCTTICCCLPCIISILGYREDLTQPRG 310

Query: 308 ATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAK 367
           AT ESI+ALPT+KFKLKKSRSS D DN SS  +GGVVAAGT+ ER ISGEDAVCCICLAK
Sbjct: 311 ATPESINALPTHKFKLKKSRSSGD-DNGSSTSEGGVVAAGTDNERAISGEDAVCCICLAK 369

Query: 368 YANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGANARILGSI-SG 426
           YANN+ELRELPCSHFFHK+CVDKWLKINASCPLCKSEVG+      S     IL S+ SG
Sbjct: 370 YANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEVGEKNSDLTSQG---ILSSLSSG 426

Query: 427 TNDS---QWRGDRRADDGSITS 445
            ND+   Q R + R D+  + S
Sbjct: 427 ENDNHQQQQRSELRVDNDLLCS 448

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
TAIR|locus:2125652	453	AT4G32600 [Arabidopsis thalian	0.953	0.940	0.553	1.7e-121
TAIR|locus:2034210	407	AT1G80400 [Arabidopsis thalian	0.892	0.980	0.474	6.6e-97
TAIR|locus:2161740	343	AT5G55970 [Arabidopsis thalian	0.395	0.516	0.387	5.2e-43
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.590	0.647	0.331	4.8e-39
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.581	0.682	0.350	5.5e-38
TAIR|locus:2133877	335	AT4G26580 [Arabidopsis thalian	0.223	0.298	0.392	5.7e-38
TAIR|locus:2139717	390	AT4G11680 [Arabidopsis thalian	0.380	0.435	0.375	1.5e-37
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.362	0.472	0.382	5.6e-34
TAIR|locus:1005452975	359	RIE1 "RING-finger protein for	0.362	0.451	0.382	6.2e-33
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	0.559	0.659	0.325	1.3e-31

TAIR|locus:2125652 AT4G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 247/446 (55%), Positives = 289/446 (64%)

Query:    13 ETETFPLLMER-PEN-VNNCEHXXXXX--XXXXXXXXXXHDRTSNGLDSTRHEDGSSGSS 68
             + +TF   MER PEN ++  EH                 HDR SN L+  +HE+    S+
Sbjct:    15 QADTFSRFMERSPENNLSRNEHIIIDIPRNAAIASSSSSHDRISNVLEPLQHEE-ERPST 73

Query:    69 RNPTSQPSTSVNGSNTRNVAFTXXXXXXXXXXPLNSGLWISVEXXXXXXXXXXXXXXXXX 128
              +P + P  +   +++ +   +          PLNSGLWIS+E                 
Sbjct:    74 VSPMAAPQPATATASSSSSMRSNPRSVRRRRSPLNSGLWISIELFLTVGQIIAAIVVLSL 133

Query:   129 FRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPF 188
              +HEHPRAPLF WIVGYA GCVATLPLLYWRY  SNQ SE DS Q R +   LN  A PF
Sbjct:   134 SKHEHPRAPLFTWIVGYACGCVATLPLLYWRYYHSNQASEQDSGQHRPN---LNVAAGPF 190

Query:   189 SISVPRTSEVEDHRAPIASHRGGQNTGVLSP-RFKVLVEYFKMALDCFFAVWFVVGNVWI 247
             + S+ RTSE +  +    S RG +  G +S  R KV+VEYFKMALDCFFAVWFVVGNVWI
Sbjct:   191 AFSISRTSEADGRQTNTTSSRGSRYPGFISAARLKVIVEYFKMALDCFFAVWFVVGNVWI 250

Query:   248 FGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILGLREDLAQTRG 307
             FGGHSSAA+APNLYRLC+VFL  SCIGYAMPFILC TICCCLPCI+SILG REDL Q RG
Sbjct:   251 FGGHSSAAEAPNLYRLCLVFLTFSCIGYAMPFILCTTICCCLPCIISILGYREDLTQPRG 310

Query:   308 ATAESIDALPTYKFKLXXXXXXXXXXXXXXIGDGGVVAAGTEKERVISGEDAVCCICLAK 367
             AT ESI+ALPT+KFKL                +GGVVAAGT+ ER ISGEDAVCCICLAK
Sbjct:   311 ATPESINALPTHKFKLKKSRSNGDDNGSST-SEGGVVAAGTDNERAISGEDAVCCICLAK 369

Query:   368 YANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISGANARILGSIS-G 426
             YANN+ELRELPCSHFFHK+CVDKWLKINASCPLCKSEVG+      S     IL S+S G
Sbjct:   370 YANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEVGEKNSDLTSQG---ILTSLSSG 426

Query:   427 TNDS------QWRGDRRADDGSITSV 446
              ND+      Q R + R ++G   +V
Sbjct:   427 ENDNHQQQQQQQRSELRVENGLANNV 452

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2034210 AT1G80400 [Arabidopsis thaliana (taxid:3702)]

 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 195/411 (47%), Positives = 255/411 (62%)

Query:     1 MDVPSAELHTETETETFPLLMERPENVNNCEHXXXXXXXXXXXXXXXHDRTSNGLDSTRH 60
             MDV S   +T T T+  PLLM+   N  +                   + T  G +S + 
Sbjct:     1 MDVSSIVRNT-TLTDQDPLLMDHG-NREHIVDITSNDEEDSSSRSSLDELTPQG-NSHQG 57

Query:    61 EDGSSGSSRNPTSQPSTSVNGSNTRNVAFTXXXXXXX--XXXPLNSGLWISVEXXXXXXX 118
             E+    SS N T Q  T  +    R  +              PLNSGLWISVE       
Sbjct:    58 EETVLSSS-NATQQHPTHPSPPQQRPTSSRRGDNGNGRRTRSPLNSGLWISVELVVTVAQ 116

Query:   119 XXXXXXXXXXFRHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSS 178
                        + EHP APLF W++GY  GC+ATLP+LYWR+R  N+ +  DS Q R +S
Sbjct:   117 IVAAIVVMVLAKDEHPEAPLFTWVIGYTCGCLATLPILYWRFRTYNRATGQDSSQ-RATS 175

Query:   179 ARLNAPAAPFS-ISVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFA 237
             ++ N+ + P++ +SV + ++ E+     A+ R  Q    L  R   LV++FKMA+DCFFA
Sbjct:   176 SQGNSESTPYTAVSVAQAADEENSTGVSAAPRNNQVGESLRTRLNGLVDHFKMAIDCFFA 235

Query:   238 VWFVVGNVWIFGGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCATICCCLPCIVSILG 297
             VWFVVGNVWIFGGHSS +D+P LYRLCI FL  SCIGYAMPFILCATICCCLPC++S+LG
Sbjct:   236 VWFVVGNVWIFGGHSSPSDSPKLYRLCIAFLTFSCIGYAMPFILCATICCCLPCLISVLG 295

Query:   298 LREDLAQTRGATAESIDALPTYKFKLXXXXXXXXXXXXXXIGDGGVVAAGTEKERVISGE 357
              RE+ +QTRGATAE+I+ALP Y+FK                G+GG +  G++K+R+ISGE
Sbjct:   296 FRENFSQTRGATAEAINALPVYRFKSKSRNDLEFSEE----GEGGFLLLGSQKKRLISGE 351

Query:   358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408
             DA CCICL +Y +++++RELPCSH FH DCVDKWLKINA+CPLCK+EVG++
Sbjct:   352 DASCCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKINATCPLCKNEVGES 402

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2161740 AT5G55970 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 76/196 (38%), Positives = 113/196 (57%)

Query:   212 QNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGGH-SSAADAPNLYRLCIVFLAI 270
             Q  G    R   L+   + +L+ FFA+WFV+GNVW+F     S   AP L+ LC+  LA 
Sbjct:   163 QQRGREETRSSHLMNKCRTSLELFFAIWFVIGNVWVFDSRFGSFHHAPKLHVLCVSLLAW 222

Query:   271 SCIGYAMPFILCATICCCLPCIVSILGLREDLAQT-RGATAESIDALPTYKFKLXXXXXX 329
             + I Y+ PF+L   +CC +P I S+LG   ++  + R A+ + I +LP++KFK       
Sbjct:   223 NAICYSFPFLLFLFLCCLVPLISSLLGYNMNMGSSDRAASDDQISSLPSWKFK------- 275

Query:   330 XXXXXXXXIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVD 389
                     I D    A+ ++ +     +D  CCICLAKY + +E+R+LPCSH FH  CVD
Sbjct:   276 -------RIDDS---ASDSDSDSATVTDDPECCICLAKYKDKEEVRKLPCSHKFHSKCVD 325

Query:   390 KWLKINASCPLCKSEV 405
             +WL+I + CPLCK ++
Sbjct:   326 QWLRIISCCPLCKQDL 341

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 95/287 (33%), Positives = 143/287 (49%)

Query:   130 RHEHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPFS 189
             R EHP  PL  W++GYA  CV  +  +   YR+ N+       +  N +     P +  S
Sbjct:   123 RKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNR-------RRTNRTTTTTPPRSRSS 175

Query:   190 ISVPRTSEVEDHRAPIASHRGGQNT--GVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWI 247
              S   +S +E+       + G Q+   G L      + ++ + A   F  +W+++G  W+
Sbjct:   176 SSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYWV 235

Query:   248 F-GGHSSAADAPNLYRLCIVFLA------ISCIGYAMPFILCATICCCLPCIVSILGLRE 300
               GG   A ++P +Y L IVFL       + C+  A+  ++   +CCCLPCI+++L    
Sbjct:   236 SAGGQELAQESPRIYWLSIVFLGFDVFFVVFCV--ALACVIGIAVCCCLPCIIAVLYA-- 291

Query:   301 DLAQTRGATAESIDALPTYKFKLXXXXXXXXXXXXXXIGDGGVVAAGTEK--ERVISGED 358
              +A   GA+ E I+ L  +KF+                 +G +   GT+   E  +  ED
Sbjct:   292 -VADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQED 350

Query:   359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
             A CCICL+ Y +  ELRELPC H FH  CVDKWL INA+CPLCK  +
Sbjct:   351 AECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNI 397

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 100/285 (35%), Positives = 142/285 (49%)

Query:   132 EHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQVSEPDSVQSRNSSARLNAPAAPFSIS 191
             E+P  PL  WI+GY   C+  +  +   YR+ N      S + R+ S R ++ ++  S S
Sbjct:    99 ENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRN------SRRRRDLSPRSSSSSSSSSSS 152

Query:   192 VPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIF-GG 250
             +    E E       S       G L        ++ + A      +W+V+G  W+  GG
Sbjct:   153 M---DEEEGLGLSRNSDERYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGG 209

Query:   251 HSSAADAPNLYRLCIVFLA------ISCIGYAMPFILCATICCCLPCIVSILGLREDLAQ 304
                A  +P LY LCIVFL       + C+  A+  ++   +CCCLPCI+++L     +A+
Sbjct:   210 QELAQGSPQLYWLCIVFLGFDVFFVVFCV--ALACVIGIAVCCCLPCIIAVLYA---VAE 264

Query:   305 TRGATAESIDALPTYKFKLXXXXXXXXXXXXXXIGD-GGVVA-AGTEK--ERVISGEDAV 360
               GA+ E ID L  +KF+                GD GGV+   GT+   E  +  EDA 
Sbjct:   265 QEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAE 324

Query:   361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
             CCICL+ Y +  ELRELPC H FH  CVDKWL INA+CPLCK  +
Sbjct:   325 CCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNI 369

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2133877 AT4G26580 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.7e-38, Sum P(3) = 5.7e-38
 Identities = 40/102 (39%), Positives = 65/102 (63%)

Query:   224 LVEYFKMALDCFFAVWFVVGNVWIFGGH-SSAADAPNLYRLCIVFLAISCIGYAMPFILC 282
             L+   + +L+ FFA+WFV+GNVW+F     S   AP L+ LCI  LA + + Y+ PF+L 
Sbjct:   172 LMNKCRTSLELFFAIWFVIGNVWVFDSRFGSFHYAPILHVLCISLLAWNALCYSFPFLLF 231

Query:   283 ATICCCLPCIVSILGLREDLAQT-RGATAESIDALPTYKFKL 323
               +CC +P + S LG   ++  + +GA+ + I +LP++K+KL
Sbjct:   232 LLLCCVVPLVSSFLGYNMNVGSSEKGASDDQISSLPSWKYKL 273

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2139717 AT4G11680 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
 Identities = 71/189 (37%), Positives = 106/189 (56%)

Query:   226 EYFKMALDCFFAVWFVVGNVWIF-GGHSSAADAPNLYRLCIVFLA------ISCIGYAMP 278
             ++ + A   F  +W+++G  W+  GG + ++D+P LY LCI+FL       + C+  A+ 
Sbjct:   204 KHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCV--ALA 261

Query:   279 FILCATICCCLPCIVSILGLREDLAQTRGATAESIDALPTYKFKLXXXXXXXXXXXXXXI 338
              ++   +CCCLPCI++IL     +A   GA+   ID +P ++F                 
Sbjct:   262 CVIGLAVCCCLPCIIAILYA---VADQEGASKNDIDQMPKFRFTKTGNVEKLSGKAR--- 315

Query:   339 GDGGVVAAGTEK--ERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA 396
               G +   GT+   ER +S EDA CCICL +Y +  ELRELPC+H FH  C+DKWL IN+
Sbjct:   316 --GIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINS 373

Query:   397 SCPLCKSEV 405
              CPLCK  +
Sbjct:   374 RCPLCKFNI 382

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
 Identities = 67/175 (38%), Positives = 93/175 (53%)

Query:   238 VWFVVGNVWIF-GGHSSAADAPNLYRLCIVFLAISCIGYAMPFILCA-----TICCCLPC 291
             VW++VG  W+  GG     +A +LY L  VFLA   + +A+  ++ A      +CCCLPC
Sbjct:   168 VWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFD-VFFAIFCVVLACLIGIALCCCLPC 226

Query:   292 IVSILGLREDLAQTRGATAESIDALPTYKFKLXXXXXXXXXXXXXXIG-DGGVVAAGTEK 350
             I+++L     +A   GA+   +  LP Y+F                I  D      G E 
Sbjct:   227 IIALLYA---VAGQEGASEADLSILPKYRFHTMNNDEKQSDGGGKMIPVDAASENLGNE- 282

Query:   351 ERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
              RV+  EDA CCICL+ Y +  EL  LPC+H FH  C+ KWLK+NA+CPLCK  +
Sbjct:   283 -RVLLPEDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNI 336

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:1005452975 RIE1 "RING-finger protein for embryogenesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
 Identities = 67/175 (38%), Positives = 92/175 (52%)

Query:   238 VWFVVGNVWIF-GGHSSAADAPNLYRLCIVFLAISCIGYAMPFIL-CAT---ICCCLPCI 292
             +W+++G  W+  GG     +APNLY L ++FLAI         +L C     +CCCLPCI
Sbjct:   183 IWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCI 242

Query:   293 VSILGLREDLAQTRGATAESIDALPTYKFKLXXXXXXXXXXXXXX--IGDGGVVAAGTEK 350
             +++L     +A T G +   +  LP YKFK                 I   G+  A    
Sbjct:   243 IALLYA---VAGTEGVSEAELGVLPLYKFKAFHSNEKNITGPGKMVPIPINGLCLA---T 296

Query:   351 ERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
             ER +  EDA CCICL+ Y +  EL  LPC+H FH  C+ KWLK+ A+CPLCK  +
Sbjct:   297 ERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 92/283 (32%), Positives = 127/283 (44%)

Query:   132 EHPRAPLFEWIVGYAAGCVATLPLLYWRYRQSNQV-SEPDSVQSRNSSARLNAPAAPFSI 190
             E P  PL  WI+GY   C+  +  +   Y++     S P S +  ++   L+        
Sbjct:   109 EDPDVPLRLWIIGYNVQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNHESLSGSEDESDG 168

Query:   191 SVPRTSEVEDHRAPIASHRGGQNTGVLSPRFKVLVEYFKMALDCFFAVWFVVGNVWIFGG 250
                  ++ +DH      H    NT                    F  VW+++G  W+   
Sbjct:   169 YSINNTDDDDHGTSFTKHLESANT-------------------MFSFVWWIIGFYWVTAD 209

Query:   251 HSSAADA-PNLYRLCIVFLAISC----IGYAMPFILCATICCCLPCIVSILGLREDLAQT 305
               + A + P LY LC+ FLA       I  A+  ++   +CCCLPCI++IL     LA  
Sbjct:   210 TEALAQSSPQLYWLCVAFLAFDVMFVVICVAVASLIGIAVCCCLPCIIAILYA---LADQ 266

Query:   306 RGATAESIDALPTYKFKLXXXXXXXXXXXXXXIGDGGVVAA-GTEK--ERVISGEDAVCC 362
              GA  E I+ L   KFK                  GG++    TE   ER++  EDA C 
Sbjct:   267 EGAPDEEIERL--LKFKFLTVKNSEKVNGEIRETQGGIMTGLDTESQTERMLLSEDAECS 324

Query:   363 ICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
             ICL  Y +  ELRELPC H FH  CVDKWL+INA+CPLCK  +
Sbjct:   325 ICLCAYEDGVELRELPCRHHFHSLCVDKWLRINATCPLCKFNI 367

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	447
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-16
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	2e-10
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	8e-09
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-08
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	4e-08
smart00184	40	smart00184, RING, Ring finger	7e-08
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	2e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	1e-04
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	3e-04
smart00744	49	smart00744, RINGv, The RING-variant domain is a C4	3e-04
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	0.001
pfam12906	47	pfam12906, RINGv, RING-variant domain	0.002
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	0.002

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 21/45 (46%), Positives = 32/45 (71%)

Query: 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSE 404
            C ICL ++   +E+  LPC H FHK+C+DKWL+ + +CPLC++ 
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLK-INASCPLCKSEV 405
           C ICL ++   + +  LPC H F + C+DKWLK    +CPLC++ +
Sbjct: 2   CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.9 bits (137), Expect = 8e-09
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWL-KINASCPLCKSEV 405
           C IC++ +  ND LR LPC H FH  CVDKWL   +  CP+C++ +
Sbjct: 326 CAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 357 EDAVCCICL---------AKYANND-ELRELPCSHFFHKDCVDKWLKINASCPLCK 402
           ED VC IC           K   +D  +    C H FH  C+ +WLK   +CPLC+
Sbjct: 18  EDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKS 403
           E+  C ICL    +   +   PC H F ++C+ ++LK  + CP+C++
Sbjct: 1   EELECPICLDLLRD--PVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 48.3 bits (115), Expect = 7e-08
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLC 401
           C ICL +Y    +   LPC H F + C+ KWL+  N +CP+C
Sbjct: 1   CPICLEEYL--KDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA-SCPLC 401
           C ICL +    D +  LPC H F   C+  WL+    +CPLC
Sbjct: 1   CPICLEEPK--DPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 348 TEKERVISGEDAVCCICLAKY----------ANNDELRELPCSHFFHKDCVDKWLKINAS 397
           T  E  ++  D  C IC+ +             +   + LPC H  H  C+  WL+   +
Sbjct: 277 TATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQT 336

Query: 398 CPLCKSEV 405
           CP+C+  V
Sbjct: 337 CPICRRPV 344

Length = 491

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 361 CCI-CLAKYANNDELREL--PCSHFFHKDCVDKWLKINASCPLCKSE 404
            C  C       DE   +   C+H FH  C+ +WL     CPL +  
Sbjct: 33  TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQT 79

Length = 88

>gnl|CDD|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 8/50 (16%)

Query: 360 VCCICLAKYANNDELRELPCS-----HFFHKDCVDKWLKI--NASCPLCK 402
           +C IC  +    D L   PC       + H++C+++W+    N +C +CK
Sbjct: 1   ICRICHDEGDEGDPL-VSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Classical RING domain: C-x (2) -C-x (9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C. Length = 49

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 357 EDAVCCICLAK-YANNDELRE---LP-CSHFFHKDCVDKWLKINASCPLCKSE 404
           +D  C IC+ K Y    +      L  C+H F  +C+D W K   +CP+C++ 
Sbjct: 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225

Length = 238

>gnl|CDD|221845 pfam12906, RINGv, RING-variant domain

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 361 CCICLAKYANNDELRELPCS-----HFFHKDCVDKWLKI--NASCPLC 401
           C ICL     ++ L   PC       + H+ C+++WLK   N +C +C
Sbjct: 1   CRICLEGEEEDEPL-IRPCRCRGSLKYVHQSCLERWLKTSGNTTCEIC 47

Length = 47

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 10/53 (18%)

Query: 361  CCICLAKYANNDELRELP------CSHFFHKDCVDKWLKINAS--CPLCKSEV 405
            C IC +     D  R LP      C + FH  C+ KW   +A   CPLC+SE+
Sbjct: 1472 CAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522

Length = 1525

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.79
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.51
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.41
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.31
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.26
PHA02929	238	N1R/p28-like protein; Provisional	99.25
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.02
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.01
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.98
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.91
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.9
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.9
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.86
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.78
PHA02926	242	zinc finger-like protein; Provisional	98.71
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.62
PF14634	44	zf-RING_5: zinc-RING finger domain	98.58
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.57
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.56
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.55
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.53
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.45
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.45
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.44
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.42
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.41
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.39
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.31
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.18
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.03
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.97
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.97
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.95
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.86
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.85
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.81
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.79
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.77
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.75
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.69
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.68
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.68
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.59
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.48
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.45
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.34
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	97.15
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.13
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	96.99
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.81
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.79
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.75
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.5
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.5
PHA02862	156	5L protein; Provisional	96.49
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.43
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.35
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.27
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.27
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.23
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.21
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.17
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	96.09
COG5152	259	Uncharacterized conserved protein, contains RING a	95.59
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.33
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.99
PHA03096	284	p28-like protein; Provisional	94.77
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	94.55
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.55
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.39
KOG2660	331	consensus Locus-specific chromosome binding protei	94.31
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.29
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.29
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.18
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	94.01
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	93.9
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.84
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	93.75
KOG4739	233	consensus Uncharacterized protein involved in syna	93.18
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	92.94
KOG1609	323	consensus Protein involved in mRNA turnover and st	92.69
KOG1940	276	consensus Zn-finger protein [General function pred	92.27
PF04641	260	Rtf2: Rtf2 RING-finger	91.96
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.49
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	90.6
COG5236	493	Uncharacterized conserved protein, contains RING Z	90.39
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	89.93
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.9
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	89.57
KOG1001	674	consensus Helicase-like transcription factor HLTF/	88.68
COG5222	427	Uncharacterized conserved protein, contains RING Z	88.54
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	88.44
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	88.36
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	88.29
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	87.36
KOG3053	293	consensus Uncharacterized conserved protein [Funct	87.33
KOG3899	381	consensus Uncharacterized conserved protein [Funct	87.23
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	87.08
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	86.43
COG5175	480	MOT2 Transcriptional repressor [Transcription]	85.78
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	85.76
KOG0298	1394	consensus DEAD box-containing helicase-like transc	83.95
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	83.71
KOG3002	299	consensus Zn finger protein [General function pred	81.86
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	81.15
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	80.12

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.1e-19  Score=182.73  Aligned_cols=95  Identities=28%  Similarity=0.643  Sum_probs=77.3

Q ss_pred             hhhhcccHhhhhcCCceeeeecccCCCCCCCCCCCCCCCCcccccccccccccCCCceeeeecccccCCCcceEeccCCc
Q 013215          303 AQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHF  382 (447)
Q Consensus       303 ~~~rgas~~~I~~LP~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~  382 (447)
                      .+.+++.++.++++|.++|+.....+.                            ...|+|||++|++||++|.|||+|.
T Consensus       202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~----------------------------~~~CaIClEdY~~GdklRiLPC~H~  253 (348)
T KOG4628|consen  202 LRRNRLIKRLLKKLPVRTFTKGDDEDA----------------------------TDTCAICLEDYEKGDKLRILPCSHK  253 (348)
T ss_pred             hhhhhhHHHHHhhCCcEEeccccccCC----------------------------CceEEEeecccccCCeeeEecCCCc
Confidence            355688999999999999987432211                            1369999999999999999999999


Q ss_pred             ccHHHHHHHHhcCCC-CCccccccCCCCCCCCCccccccccCCC
Q 013215          383 FHKDCVDKWLKINAS-CPLCKSEVGDTVLGSISGANARILGSIS  425 (447)
Q Consensus       383 FH~~CId~WL~~~~t-CPlCR~~I~~~~~~~~~~~~~~~~~~~~  425 (447)
                      ||..|||+||..+.+ ||+||+++.+....+...+..+.+...+
T Consensus       254 FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~tp~~~~~~  297 (348)
T KOG4628|consen  254 FHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSEDTPLLSQGP  297 (348)
T ss_pred             hhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCCCccccCCC
Confidence            999999999987755 9999999999988877666555444444

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.51  E-value=4e-15  Score=107.48  Aligned_cols=43  Identities=44%  Similarity=1.252  Sum_probs=40.7

Q ss_pred             eeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccc
Q 013215          360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCK  402 (447)
Q Consensus       360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR  402 (447)
                      +|+||+++|.+++.+..|+|+|.||.+||.+|++.+.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            5999999999999999999999999999999999999999997

...

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=3e-13  Score=135.20  Aligned_cols=53  Identities=30%  Similarity=0.901  Sum_probs=44.8

Q ss_pred             cCCCceeeeeccc-ccCCC---------cceEeccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215          355 SGEDAVCCICLAK-YANND---------ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       355 s~ed~~C~ICL~~-y~~~d---------~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      ..+|..|.||+++ |+.+.         .-++|||+|+||.+|++.|+++++|||+||.++.-
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if  346 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF  346 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence            3457889999999 55442         34789999999999999999999999999999443

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=9.9e-13  Score=128.64  Aligned_cols=50  Identities=44%  Similarity=1.101  Sum_probs=46.5

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHh-cCCCCCccccccCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK-INASCPLCKSEVGD  407 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~  407 (447)
                      ..+|+|||++|-.+|+++.|||+|.||..||++|+. -+..||+||.+|.+
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            467999999999999999999999999999999997 68889999999865

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.26  E-value=2.6e-12  Score=102.98  Aligned_cols=45  Identities=40%  Similarity=0.974  Sum_probs=36.5

Q ss_pred             CceeeeecccccCC----------CcceEeccCCcccHHHHHHHHhcCCCCCccc
Q 013215          358 DAVCCICLAKYANN----------DELRELPCSHFFHKDCVDKWLKINASCPLCK  402 (447)
Q Consensus       358 d~~C~ICL~~y~~~----------d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR  402 (447)
                      +..|+||++.|.+.          -.+...+|+|.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            34599999999432          2456678999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.25  E-value=3.4e-12  Score=123.73  Aligned_cols=77  Identities=23%  Similarity=0.582  Sum_probs=56.5

Q ss_pred             hhhcccHhhhhcCCceeeeecccCCCCCCCCCCCCCCCCcccccccccccccCCCceeeeecccccCCCc----ceEe-c
Q 013215          304 QTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDE----LREL-P  378 (447)
Q Consensus       304 ~~rgas~~~I~~LP~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~s~ed~~C~ICL~~y~~~d~----lr~L-P  378 (447)
                      ..++..+..++.+|....+......                          ..++.+|+||++.+.+++.    +..+ +
T Consensus       146 ~k~~~~~~~i~~lp~vl~~~e~~~~--------------------------~~~~~eC~ICle~~~~~~~~~~~~~vl~~  199 (238)
T PHA02929        146 KKGKNYKKFLKTIPSVLSEYEKLYN--------------------------RSKDKECAICMEKVYDKEIKNMYFGILSN  199 (238)
T ss_pred             HhcchhHHHHHhcchhhhhhhhhhc--------------------------CCCCCCCccCCcccccCccccccceecCC
Confidence            4456688888888887554321100                          1235679999999876541    2344 5


Q ss_pred             cCCcccHHHHHHHHhcCCCCCccccccC
Q 013215          379 CSHFFHKDCVDKWLKINASCPLCKSEVG  406 (447)
Q Consensus       379 C~H~FH~~CId~WL~~~~tCPlCR~~I~  406 (447)
                      |+|.||.+||.+|++.+.+||+||.++.
T Consensus       200 C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        200 CNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            9999999999999999999999999875

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.7e-10  Score=112.91  Aligned_cols=56  Identities=29%  Similarity=0.715  Sum_probs=48.9

Q ss_pred             cccccCCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          351 ERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       351 e~~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      +..+...+.+|.|||+..+++   ..+||||+||+.||..|+..+..||+||....+..
T Consensus       232 ~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  232 LSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            334555678899999998888   89999999999999999999999999999987764

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.01  E-value=2.7e-10  Score=106.62  Aligned_cols=59  Identities=37%  Similarity=0.750  Sum_probs=48.1

Q ss_pred             ccCCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc----------------CCCCCccccccCCCCCCCCCc
Q 013215          354 ISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI----------------NASCPLCKSEVGDTVLGSISG  415 (447)
Q Consensus       354 ~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~----------------~~tCPlCR~~I~~~~~~~~~~  415 (447)
                      ..+++.+|.||++.+.++   ..++|+|.||+.||.+|+..                ..+||+||.+|......+..+
T Consensus        14 ~~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg   88 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG   88 (193)
T ss_pred             cCCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence            345678899999999877   67899999999999999852                357999999998876655444

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.1e-09  Score=104.52  Aligned_cols=57  Identities=32%  Similarity=0.667  Sum_probs=49.0

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc---CCCCCccccccCCCCCCCCCc
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI---NASCPLCKSEVGDTVLGSISG  415 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~~~~~~~~~~  415 (447)
                      ....+|.|||+.-+++   .+..|+|+||+-||.+||+.   +..||+||..|..++..+.++
T Consensus        45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG  104 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG  104 (230)
T ss_pred             CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence            4567899999998887   77889999999999999976   455899999999988877666

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.91  E-value=8e-10  Score=78.10  Aligned_cols=44  Identities=43%  Similarity=1.179  Sum_probs=37.0

Q ss_pred             eeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCcccccc
Q 013215          360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEV  405 (447)
Q Consensus       360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I  405 (447)
                      +|+||++.+  .+.+..++|+|.||..|++.|++. +..||+||.++
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998  334555669999999999999987 78899999764

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=6.1e-10  Score=120.59  Aligned_cols=64  Identities=33%  Similarity=0.819  Sum_probs=53.6

Q ss_pred             ccccCCCceeeeecccccCCCc--ceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCCCCCc
Q 013215          352 RVISGEDAVCCICLAKYANNDE--LRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSISG  415 (447)
Q Consensus       352 ~~~s~ed~~C~ICL~~y~~~d~--lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~~~~  415 (447)
                      +.....+..|+||++++..+..  .++|||+|+||..|+.+|++++++||+||..+......+..+
T Consensus       285 ~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~~~~~~  350 (543)
T KOG0802|consen  285 RGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVLWQIAA  350 (543)
T ss_pred             hhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhccccccccC
Confidence            3344568889999999998765  789999999999999999999999999999777766544433

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.90  E-value=4.5e-10  Score=83.26  Aligned_cols=47  Identities=32%  Similarity=0.895  Sum_probs=40.1

Q ss_pred             CceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      +..|.||++...+   +..+||+|. |+..|+.+|++.+.+||+||++|.+
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            5679999998655   589999999 9999999999999999999999853

...

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.86  E-value=1.9e-09  Score=88.20  Aligned_cols=50  Identities=38%  Similarity=0.834  Sum_probs=39.3

Q ss_pred             CCceeeeeccccc--------CCC--cceEeccCCcccHHHHHHHHhc---CCCCCccccccC
Q 013215          357 EDAVCCICLAKYA--------NND--ELRELPCSHFFHKDCVDKWLKI---NASCPLCKSEVG  406 (447)
Q Consensus       357 ed~~C~ICL~~y~--------~~d--~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~  406 (447)
                      +|+.|.||...|+        .|+  .+..-.|+|.||..||.+||..   +.+||+||++..
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            3677999999997        223  3434459999999999999964   678999998753

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.78  E-value=2.5e-09  Score=75.20  Aligned_cols=39  Identities=41%  Similarity=1.068  Sum_probs=33.9

Q ss_pred             eeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCcc
Q 013215          361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLC  401 (447)
Q Consensus       361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlC  401 (447)
                      |.||++.+.+  .+..++|+|.|+.+||.+|++.+.+||+|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8899999888  46789999999999999999999999998

>PHA02926 zinc finger-like protein; Provisional

Probab=98.71  E-value=6.5e-09  Score=98.68  Aligned_cols=51  Identities=24%  Similarity=0.741  Sum_probs=38.4

Q ss_pred             CCCceeeeecccccCC-----CcceEe-ccCCcccHHHHHHHHhcC------CCCCccccccC
Q 013215          356 GEDAVCCICLAKYANN-----DELREL-PCSHFFHKDCVDKWLKIN------ASCPLCKSEVG  406 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~-----d~lr~L-PC~H~FH~~CId~WL~~~------~tCPlCR~~I~  406 (447)
                      .++.+|+|||+..-+.     .....| +|+|.||..||++|.+.+      .+||+||..+.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            3467899999886332     123455 499999999999999753      45999998765

>smart00184 RING Ring finger

Probab=98.62  E-value=2.5e-08  Score=67.88  Aligned_cols=38  Identities=47%  Similarity=1.157  Sum_probs=33.1

Q ss_pred             eeeecccccCCCcceEeccCCcccHHHHHHHHh-cCCCCCcc
Q 013215          361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLK-INASCPLC  401 (447)
Q Consensus       361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlC  401 (447)
                      |.||++.   ......++|+|.||..|++.|++ .+.+||+|
T Consensus         1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899888   34568999999999999999998 67789998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.58  E-value=3e-08  Score=71.66  Aligned_cols=44  Identities=32%  Similarity=0.852  Sum_probs=39.5

Q ss_pred             eeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCcccc
Q 013215          360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKS  403 (447)
Q Consensus       360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~  403 (447)
                      .|.||+++|.+....+.++|+|.|+..|+.++......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            39999999976677899999999999999999977888999985

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.57  E-value=2e-08  Score=71.01  Aligned_cols=39  Identities=46%  Similarity=1.128  Sum_probs=34.9

Q ss_pred             eeeecccccCCCcceEeccCCcccHHHHHHHHh--cCCCCCcc
Q 013215          361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLK--INASCPLC  401 (447)
Q Consensus       361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~--~~~tCPlC  401 (447)
                      |.||++.+.++.  ..++|+|.|+..||.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            889999988873  6899999999999999998  56779998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00504 Ubox Modified RING finger domain

Probab=98.56  E-value=4.8e-08  Score=75.14  Aligned_cols=48  Identities=19%  Similarity=0.409  Sum_probs=42.6

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      ..|+||++-+.++   ..+||+|.|.+.||.+|++.+.+||+|+.++....
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~   49 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED   49 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence            4599999999987   67899999999999999998999999999885543

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.5e-08  Score=98.23  Aligned_cols=53  Identities=30%  Similarity=0.735  Sum_probs=45.2

Q ss_pred             CCceeeeecccccCCC-------cceEeccCCcccHHHHHHHH--hcCCCCCccccccCCCC
Q 013215          357 EDAVCCICLAKYANND-------ELRELPCSHFFHKDCVDKWL--KINASCPLCKSEVGDTV  409 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d-------~lr~LPC~H~FH~~CId~WL--~~~~tCPlCR~~I~~~~  409 (447)
                      +|..|+||=..+...+       ...+|.|+|+||..||+.|.  -+++|||-||..+.-+.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r  284 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR  284 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence            4678999998887655       68899999999999999996  56899999999886553

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=3.4e-08  Score=90.75  Aligned_cols=50  Identities=26%  Similarity=0.628  Sum_probs=43.1

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      +.|+|||+.|..... .-..|||+||++||+.-++....||+|++.|.+..
T Consensus       132 ~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~  181 (187)
T KOG0320|consen  132 YKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ  181 (187)
T ss_pred             cCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence            679999999987643 24669999999999999999999999999887653

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.45  E-value=8.5e-08  Score=68.77  Aligned_cols=38  Identities=39%  Similarity=0.963  Sum_probs=30.4

Q ss_pred             eeeecccccCCCcceEeccCCcccHHHHHHHHhcC----CCCCcc
Q 013215          361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN----ASCPLC  401 (447)
Q Consensus       361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~----~tCPlC  401 (447)
                      |+||++-|.++   ..|+|+|.|+..||.+|.+..    ..||+|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999   889999999999999999653    469998

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=5.5e-08  Score=77.37  Aligned_cols=48  Identities=35%  Similarity=0.843  Sum_probs=36.2

Q ss_pred             Cceeeeeccccc--------CCCc--ceEeccCCcccHHHHHHHHhc---CCCCCcccccc
Q 013215          358 DAVCCICLAKYA--------NNDE--LRELPCSHFFHKDCVDKWLKI---NASCPLCKSEV  405 (447)
Q Consensus       358 d~~C~ICL~~y~--------~~d~--lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I  405 (447)
                      +.+|-||...|.        .||.  +..=-|.|.||..||.+|+..   +..||+||++.
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            347999999997        3332  211239999999999999954   56799999875

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.44  E-value=1.4e-07  Score=75.72  Aligned_cols=40  Identities=30%  Similarity=0.664  Sum_probs=31.5

Q ss_pred             ccCCCcceEe--ccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215          368 YANNDELREL--PCSHFFHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       368 y~~~d~lr~L--PC~H~FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      ...+++....  -|+|.||..||.+||..+..||+||++..-
T Consensus        41 ~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~   82 (88)
T COG5194          41 MTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL   82 (88)
T ss_pred             CCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence            3355544333  399999999999999999999999987543

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=4.9e-07  Score=94.02  Aligned_cols=49  Identities=27%  Similarity=0.821  Sum_probs=39.3

Q ss_pred             ceeeeecccccC---CC-----------cceEeccCCcccHHHHHHHHh-cCCCCCccccccCC
Q 013215          359 AVCCICLAKYAN---ND-----------ELRELPCSHFFHKDCVDKWLK-INASCPLCKSEVGD  407 (447)
Q Consensus       359 ~~C~ICL~~y~~---~d-----------~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~  407 (447)
                      ..|+|||.+..-   +.           .....||+|+||..|+..|.. .+-.||.||.++.+
T Consensus       572 ~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  572 NDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            459999988751   11           144669999999999999998 67799999998854

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.41  E-value=1.2e-07  Score=98.30  Aligned_cols=49  Identities=29%  Similarity=0.634  Sum_probs=43.8

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ....|.||++.|.+.   ..+||+|.||..||..|+.....||+||..+...
T Consensus        25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            456799999999877   4789999999999999999888999999998865

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.39  E-value=1.9e-07  Score=69.25  Aligned_cols=42  Identities=29%  Similarity=0.975  Sum_probs=33.6

Q ss_pred             eeeeecccccCCCcceEeccC-----CcccHHHHHHHHhc--CCCCCccc
Q 013215          360 VCCICLAKYANNDELRELPCS-----HFFHKDCVDKWLKI--NASCPLCK  402 (447)
Q Consensus       360 ~C~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR  402 (447)
                      .|-||++ +.+++....+||.     |+||..|+.+|+..  +.+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3899999 4445555689985     99999999999944  55899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=3.6e-07  Score=88.85  Aligned_cols=52  Identities=31%  Similarity=0.671  Sum_probs=45.0

Q ss_pred             cCCCceeeeecccccCCCcceEeccCCcccHHHHHH-HHhcCCC-CCccccccCCCC
Q 013215          355 SGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDK-WLKINAS-CPLCKSEVGDTV  409 (447)
Q Consensus       355 s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~-WL~~~~t-CPlCR~~I~~~~  409 (447)
                      ...|.+|.||++..+..   ..+||+|+|+..||-. |-+++.. ||+||+.+..+.
T Consensus       212 p~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         212 PLADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             cccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            34588999999988877   7899999999999999 9888777 999999887653

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.18  E-value=3.9e-07  Score=100.46  Aligned_cols=49  Identities=39%  Similarity=0.944  Sum_probs=38.1

Q ss_pred             CCCceeeeecccccCCCcceEec------cCCcccHHHHHHHHhc--CCCCCccccccC
Q 013215          356 GEDAVCCICLAKYANNDELRELP------CSHFFHKDCVDKWLKI--NASCPLCKSEVG  406 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LP------C~H~FH~~CId~WL~~--~~tCPlCR~~I~  406 (447)
                      ....+|+||..-...-|  |.||      |+|.||..|+.+|++.  +.+||+||.+|.
T Consensus      1467 sG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            44678999988765211  4444      7899999999999976  678999998764

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.03  E-value=2.2e-06  Score=61.82  Aligned_cols=38  Identities=39%  Similarity=0.898  Sum_probs=22.7

Q ss_pred             eeeecccccCCC-cceEeccCCcccHHHHHHHHhcC----CCCC
Q 013215          361 CCICLAKYANND-ELRELPCSHFFHKDCVDKWLKIN----ASCP  399 (447)
Q Consensus       361 C~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~----~tCP  399 (447)
                      |+||.+ |.+.+ .-+.|||+|.|.++||+++++.+    .+||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 86644 45789999999999999999743    3577

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.97  E-value=3.1e-06  Score=67.72  Aligned_cols=51  Identities=18%  Similarity=0.494  Sum_probs=40.8

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVL  410 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~  410 (447)
                      +...|+||.+-|.++   ..+||+|.|-+.||.+||+. +.+||+|+.++.....
T Consensus         3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l   54 (73)
T PF04564_consen    3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL   54 (73)
T ss_dssp             GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred             cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence            456799999999999   78999999999999999988 8999999998877543

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=3.1e-06  Score=71.23  Aligned_cols=26  Identities=46%  Similarity=1.129  Sum_probs=25.0

Q ss_pred             cCCcccHHHHHHHHhcCCCCCccccc
Q 013215          379 CSHFFHKDCVDKWLKINASCPLCKSE  404 (447)
Q Consensus       379 C~H~FH~~CId~WL~~~~tCPlCR~~  404 (447)
                      |+|-||..||.+||+.+..||||.++
T Consensus        81 CNHaFH~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   81 CNHAFHFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             cchHHHHHHHHHHHhhcCcCCCcCcc
Confidence            99999999999999999999999876

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.95  E-value=2.8e-06  Score=92.46  Aligned_cols=54  Identities=26%  Similarity=0.626  Sum_probs=48.4

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLG  411 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~  411 (447)
                      ...|.+||..+.++......+|.|+||..||+.|-+.-.|||+||.++.+....
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~  176 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVL  176 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeee
Confidence            356999999999998888889999999999999999999999999998876443

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=8e-06  Score=83.11  Aligned_cols=49  Identities=35%  Similarity=0.919  Sum_probs=38.3

Q ss_pred             CceeeeecccccCCCcceEec-cCCcccHHHHHHHHhc---CCCCCccccccC
Q 013215          358 DAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKI---NASCPLCKSEVG  406 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~---~~tCPlCR~~I~  406 (447)
                      .++|.||.+-+....++..+- |+|+||..|+.+|+..   +.+||.||-.+.
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~   56 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ   56 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence            467999955555555777777 9999999999999965   468999994433

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.85  E-value=9.9e-06  Score=81.32  Aligned_cols=52  Identities=29%  Similarity=0.592  Sum_probs=40.2

Q ss_pred             Cceeeeeccc-ccCCC-cceEeccCCcccHHHHHHHH-hcCCCCCccccccCCCC
Q 013215          358 DAVCCICLAK-YANND-ELRELPCSHFFHKDCVDKWL-KINASCPLCKSEVGDTV  409 (447)
Q Consensus       358 d~~C~ICL~~-y~~~d-~lr~LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~~  409 (447)
                      +..|+||..+ |-.++ .+..-+|+|.||..||+..+ .....||.|+.++.+..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            5679999986 54444 33344899999999999965 55668999999988765

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=9.5e-06  Score=85.39  Aligned_cols=51  Identities=29%  Similarity=0.615  Sum_probs=40.9

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-----CCCCCccccccCCCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-----NASCPLCKSEVGDTVLG  411 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-----~~tCPlCR~~I~~~~~~  411 (447)
                      +..|+|||+....+   ..+.|||+||..||-+.+..     -..||+|+..|.....-
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~  241 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL  241 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence            78899999987776   34449999999999998754     35699999999885443

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.79  E-value=7.6e-06  Score=80.82  Aligned_cols=51  Identities=27%  Similarity=0.778  Sum_probs=44.2

Q ss_pred             eeeeecccccCCCcceEeccCCcccHHHHHHHHh-----------------------cCCCCCccccccCCCCC
Q 013215          360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLK-----------------------INASCPLCKSEVGDTVL  410 (447)
Q Consensus       360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-----------------------~~~tCPlCR~~I~~~~~  410 (447)
                      .|.|||-.|.+++...+++|.|+||..|+.+.|.                       ....||+||..|.....
T Consensus       117 qCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~  190 (368)
T KOG4445|consen  117 QCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN  190 (368)
T ss_pred             ceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence            4999999999999999999999999999988772                       13459999999987654

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=8.3e-06  Score=78.70  Aligned_cols=45  Identities=33%  Similarity=0.803  Sum_probs=40.6

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCcccc
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKS  403 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~  403 (447)
                      .+...|.||++.|.++   +.|||+|.|+..||..+......||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            3567899999999999   89999999999999999986677999994

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.75  E-value=5.1e-06  Score=66.11  Aligned_cols=49  Identities=27%  Similarity=0.711  Sum_probs=23.7

Q ss_pred             ceeeeecccccCCCcceEe-----ccCCcccHHHHHHHHhc-----------CCCCCccccccCC
Q 013215          359 AVCCICLAKYANNDELREL-----PCSHFFHKDCVDKWLKI-----------NASCPLCKSEVGD  407 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~L-----PC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~~  407 (447)
                      .+|.||.+.+.+++++-.+     .|++.||..||.+||..           ..+||.|+.+|.-
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            4699999987634322222     37899999999999942           1249999998753

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.69  E-value=1.2e-05  Score=80.58  Aligned_cols=49  Identities=33%  Similarity=0.699  Sum_probs=44.5

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL  410 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  410 (447)
                      ..|-||.+=|..+   ..+||+|-||.-||++.|..+..||+|+.++.+...
T Consensus        24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L   72 (442)
T KOG0287|consen   24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL   72 (442)
T ss_pred             HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence            4599999999888   899999999999999999999999999999887543

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=3.6e-05  Score=77.99  Aligned_cols=50  Identities=24%  Similarity=0.697  Sum_probs=41.4

Q ss_pred             CCCceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      +...+|.|||.+-.+-   ..|||.|+ .|..|.+.---+.+.||+||++|...
T Consensus       288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l  338 (349)
T KOG4265|consen  288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL  338 (349)
T ss_pred             cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence            4467899999987764   89999998 78999888655677899999998764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.68  E-value=1.3e-05  Score=82.89  Aligned_cols=49  Identities=31%  Similarity=0.802  Sum_probs=39.6

Q ss_pred             CCCceeeeecccccCCC-cceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215          356 GEDAVCCICLAKYANND-ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG  406 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  406 (447)
                      -|-.+|++||+.+.... -++...|+|-||..|+.+|-  ..+||+||.-..
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            34567999999997654 35666699999999999996  467999998765

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=2.9e-05  Score=76.92  Aligned_cols=54  Identities=24%  Similarity=0.402  Sum_probs=44.3

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCCCCCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVLGSIS  414 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~~~~~  414 (447)
                      +.+|.||+.+..-+   ..|+|+|.|+..||+-=.+. +.+||+||.+|.+.-.-.+.
T Consensus         7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~ps   61 (324)
T KOG0824|consen    7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPS   61 (324)
T ss_pred             CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchh
Confidence            46799999887766   78999999999999987765 55699999999887554443

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.48  E-value=5.1e-05  Score=74.75  Aligned_cols=47  Identities=26%  Similarity=0.641  Sum_probs=42.3

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ..|-||-+-|..+   ...+|+|-||.-||..-|..+.-||+||.+..+.
T Consensus        26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es   72 (391)
T COG5432          26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES   72 (391)
T ss_pred             HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence            4599999998887   7889999999999999999999999999987654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=8e-05  Score=76.47  Aligned_cols=50  Identities=34%  Similarity=0.947  Sum_probs=38.9

Q ss_pred             ceeeeecccccCCCc--ceEeccCCcccHHHHHHHHh--cCCCCCccccccCCC
Q 013215          359 AVCCICLAKYANNDE--LRELPCSHFFHKDCVDKWLK--INASCPLCKSEVGDT  408 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~--lr~LPC~H~FH~~CId~WL~--~~~tCPlCR~~I~~~  408 (447)
                      ..|+|||+.|+..-+  +..|-|+|.|-.+||++||.  ....||+|+.+-.+.
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr   58 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR   58 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH
Confidence            469999999986543  44455999999999999994  245699998765543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=8.9e-05  Score=75.87  Aligned_cols=52  Identities=29%  Similarity=0.770  Sum_probs=39.9

Q ss_pred             CCCceeeeecccccCCC----cceEec-cCCcccHHHHHHHH--hc-----CCCCCccccccCC
Q 013215          356 GEDAVCCICLAKYANND----ELRELP-CSHFFHKDCVDKWL--KI-----NASCPLCKSEVGD  407 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d----~lr~LP-C~H~FH~~CId~WL--~~-----~~tCPlCR~~I~~  407 (447)
                      ..+.+|.||++...+..    ....|| |+|.|+..||++|-  ++     ...||.||....-
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            45778999999876543    133456 99999999999998  33     5679999977544

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=97.15  E-value=0.00029  Score=80.87  Aligned_cols=59  Identities=31%  Similarity=0.705  Sum_probs=47.9

Q ss_pred             cccccCCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC----------CCCCccccccCCCC
Q 013215          351 ERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN----------ASCPLCKSEVGDTV  409 (447)
Q Consensus       351 e~~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~----------~tCPlCR~~I~~~~  409 (447)
                      +......|+.|-||+-+--......+|-|+|+||..|.+.-|.+.          -.||+|+.+|....
T Consensus      3479 s~tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3479 SATKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred             hhhhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence            334556688999999888777888999999999999998877542          35999999997754

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.00013  Score=54.78  Aligned_cols=47  Identities=21%  Similarity=0.610  Sum_probs=33.6

Q ss_pred             CceeeeecccccCCCcceEeccCCc-ccHHHH-HHHHhcCCCCCccccccCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHF-FHKDCV-DKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CI-d~WL~~~~tCPlCR~~I~~  407 (447)
                      +++|.||++.-.+.   ..--|+|+ .+.+|- +.|-..+.+||+||++|.+
T Consensus         7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d   55 (62)
T KOG4172|consen    7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD   55 (62)
T ss_pred             ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence            46899997764443   34449998 567774 4454579999999998753

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=9.8e-05  Score=74.69  Aligned_cols=50  Identities=30%  Similarity=0.623  Sum_probs=41.5

Q ss_pred             CceeeeecccccCCCcceEec-cCCcccHHHHHHHHhc-CCCCCccccccCCCCC
Q 013215          358 DAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVL  410 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~  410 (447)
                      +..|.|||+=+..-   +..+ |.|.||.+||.+=++. +++||.||+.+...-.
T Consensus        43 ~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs   94 (381)
T KOG0311|consen   43 QVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS   94 (381)
T ss_pred             hhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence            46799999887765   5556 9999999999999865 8899999999876543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.81  E-value=0.00036  Score=71.38  Aligned_cols=48  Identities=38%  Similarity=0.834  Sum_probs=39.4

Q ss_pred             CceeeeecccccC-CCcceEeccCCcccHHHHHHHHhcCC--CCCcccccc
Q 013215          358 DAVCCICLAKYAN-NDELRELPCSHFFHKDCVDKWLKINA--SCPLCKSEV  405 (447)
Q Consensus       358 d~~C~ICL~~y~~-~d~lr~LPC~H~FH~~CId~WL~~~~--tCPlCR~~I  405 (447)
                      +.-|-.|=+.|.- ++.+-.|||.|+||..|+...|.++.  +||.||+-+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr  415 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR  415 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            3459999998864 45688999999999999999997764  599999433

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.00059  Score=71.23  Aligned_cols=50  Identities=30%  Similarity=0.767  Sum_probs=44.5

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ..+.+|+||+.-+.++   ..+||+|-|+..||++-+..+..||+||.++.+-
T Consensus        82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~  131 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVEL  131 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccccc
Confidence            4567899999998888   6779999999999999889899999999999873

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.75  E-value=0.00066  Score=60.37  Aligned_cols=36  Identities=28%  Similarity=0.672  Sum_probs=31.3

Q ss_pred             CceeeeecccccCCCcceEeccC------CcccHHHHHHHHh
Q 013215          358 DAVCCICLAKYANNDELRELPCS------HFFHKDCVDKWLK  393 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~------H~FH~~CId~WL~  393 (447)
                      ..+|+||++.+.+++-+..++|+      |+||.+|+.+|-+
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            35799999999996678889986      9999999999943

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.50  E-value=0.0016  Score=66.96  Aligned_cols=50  Identities=26%  Similarity=0.803  Sum_probs=41.2

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--CCCCCccccccCCCCCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--NASCPLCKSEVGDTVLG  411 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~~~~~  411 (447)
                      ..|-||-+.   +..++.=||+|+.|..|+..|-..  .++||.||.+|......
T Consensus       370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v  421 (563)
T KOG1785|consen  370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV  421 (563)
T ss_pred             HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence            349999764   445789999999999999999843  68999999999887643

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.0021  Score=61.54  Aligned_cols=52  Identities=27%  Similarity=0.626  Sum_probs=42.3

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--------CCCCCccccccCCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--------NASCPLCKSEVGDTVL  410 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--------~~tCPlCR~~I~~~~~  410 (447)
                      +.-|..|--.++.+|.+ .|.|-|+||++|++.|-..        .-.||-|..+|.+...
T Consensus        50 ~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N  109 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN  109 (299)
T ss_pred             CCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence            34599999999988765 5679999999999999743        3459999999987643

>PHA02862 5L protein; Provisional

Probab=96.49  E-value=0.0021  Score=57.66  Aligned_cols=45  Identities=24%  Similarity=0.685  Sum_probs=35.0

Q ss_pred             ceeeeecccccCCCcceEeccC-----CcccHHHHHHHHhc--CCCCCccccccCC
Q 013215          359 AVCCICLAKYANNDELRELPCS-----HFFHKDCVDKWLKI--NASCPLCKSEVGD  407 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR~~I~~  407 (447)
                      +.|=||.++-+++    .-||.     -.-|.+|+.+|++.  +.+||+||.+..-
T Consensus         3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            5699999985433    46864     67899999999954  6679999988753

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.0012  Score=60.33  Aligned_cols=33  Identities=33%  Similarity=0.828  Sum_probs=29.0

Q ss_pred             cccCCCceeeeecccccCCCcceEeccCCcccH
Q 013215          353 VISGEDAVCCICLAKYANNDELRELPCSHFFHK  385 (447)
Q Consensus       353 ~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~  385 (447)
                      ++..+.-||.|||++++.++.+..|||-.+||+
T Consensus       172 VL~ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  172 VLKDDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             hhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            455556679999999999999999999999997

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.35  E-value=0.0017  Score=47.72  Aligned_cols=40  Identities=30%  Similarity=0.982  Sum_probs=27.9

Q ss_pred             eeeecccccCCCcceEeccC-----CcccHHHHHHHHh--cCCCCCcc
Q 013215          361 CCICLAKYANNDELRELPCS-----HFFHKDCVDKWLK--INASCPLC  401 (447)
Q Consensus       361 C~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~--~~~tCPlC  401 (447)
                      |-||+++-.+.+ .-..||+     -+.|..|+.+|+.  .+.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            679998877665 3467864     4889999999996  46779988

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.27  E-value=0.001  Score=51.83  Aligned_cols=47  Identities=21%  Similarity=0.561  Sum_probs=23.5

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      ..|.+|.+-+..+  +..-.|.|.|+..||..-+.  ..||+|+.+.-.+.
T Consensus         8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD   54 (65)
T PF14835_consen    8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD   54 (65)
T ss_dssp             TS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred             cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence            3499999887776  45566999999999988443  45999998876543

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.27  E-value=0.0038  Score=56.99  Aligned_cols=49  Identities=29%  Similarity=0.735  Sum_probs=36.0

Q ss_pred             CCCceeeeecccccCCCcceEeccC--C---cccHHHHHHHHhc--CCCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCS--H---FFHKDCVDKWLKI--NASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~--H---~FH~~CId~WL~~--~~tCPlCR~~I~~~  408 (447)
                      ..+.+|=||.++..+  .  .-||.  .   .-|.+|+.+|+..  +.+|++|+++..-.
T Consensus         6 ~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          6 LMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            346779999988532  2  35864  3   6699999999954  56799999886543

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.23  E-value=0.0021  Score=67.35  Aligned_cols=55  Identities=24%  Similarity=0.564  Sum_probs=45.5

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGS  412 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~  412 (447)
                      .++..|+||...+.++-.  ...|+|.|+..|+.+|+..+..||.|+..+.....-.
T Consensus        19 ~~~l~C~~C~~vl~~p~~--~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~   73 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQ--TTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP   73 (391)
T ss_pred             cccccCccccccccCCCC--CCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence            356789999999998832  2579999999999999999999999988877655443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.0015  Score=72.12  Aligned_cols=49  Identities=22%  Similarity=0.639  Sum_probs=38.7

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHh-cCCCCCccccccCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK-INASCPLCKSEVGDTV  409 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~  409 (447)
                      -..|+.|-..+.+-   ....|+|+||..||.+-+. +...||.|-..++...
T Consensus       643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            35699998776663   4555999999999999994 5778999988776543

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.17  E-value=0.0016  Score=49.84  Aligned_cols=41  Identities=22%  Similarity=0.638  Sum_probs=28.9

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--CCCCCc
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--NASCPL  400 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPl  400 (447)
                      ...|+|.+..|+++  ++-..|+|.|-++.|.+||+.  ...||.
T Consensus        11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            45699999999877  666789999999999999943  556998

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.09  E-value=0.0029  Score=65.41  Aligned_cols=47  Identities=34%  Similarity=0.775  Sum_probs=38.9

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--------CCCCCcccccc
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--------NASCPLCKSEV  405 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--------~~tCPlCR~~I  405 (447)
                      ..|+||+++....+....|||+|+|++.|+...+.+        .-.||-|+-.=
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~  239 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS  239 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence            459999999887789999999999999999999854        23488776543

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.59  E-value=0.0054  Score=57.75  Aligned_cols=44  Identities=23%  Similarity=0.534  Sum_probs=39.0

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCcccccc
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV  405 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I  405 (447)
                      ..|-||-.+|+.+   ....|+|+||..|..+=++...+|-+|-+..
T Consensus       197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            3799999999998   6778999999999999899999999996543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=0.016  Score=57.25  Aligned_cols=49  Identities=22%  Similarity=0.428  Sum_probs=38.1

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--CCCCCccccccC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--NASCPLCKSEVG  406 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~  406 (447)
                      ..+.+|++|-+.=..+  ....+|+|+||..||.+=+.-  ..+||.|-.++.
T Consensus       237 t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            4577899997764443  566779999999999987643  579999977765

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.99  E-value=0.0083  Score=50.52  Aligned_cols=33  Identities=27%  Similarity=0.716  Sum_probs=28.0

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHH
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVD  389 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId  389 (447)
                      .++..|++|-..+.. ......||+|+||..|++
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            345669999999977 578889999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PHA03096 p28-like protein; Provisional

Probab=94.77  E-value=0.014  Score=58.59  Aligned_cols=44  Identities=23%  Similarity=0.497  Sum_probs=32.2

Q ss_pred             ceeeeecccccCC----CcceEec-cCCcccHHHHHHHHhc---CCCCCccc
Q 013215          359 AVCCICLAKYANN----DELRELP-CSHFFHKDCVDKWLKI---NASCPLCK  402 (447)
Q Consensus       359 ~~C~ICL~~y~~~----d~lr~LP-C~H~FH~~CId~WL~~---~~tCPlCR  402 (447)
                      .+|.|||+.....    .....|+ |+|.|+..||..|-..   +.+||.||
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            6799999886543    2455788 9999999999999843   33444443

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=94.55  E-value=0.024  Score=63.37  Aligned_cols=51  Identities=29%  Similarity=0.738  Sum_probs=36.7

Q ss_pred             cCCCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhc-------CCCCCcccccc
Q 013215          355 SGEDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKI-------NASCPLCKSEV  405 (447)
Q Consensus       355 s~ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~-------~~tCPlCR~~I  405 (447)
                      +.+-.+|.||.+.+..-+.+=-= .|-|+||..||.+|-+.       .=.||-|+...
T Consensus       188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            34457899999998766543222 27899999999999854       22499998433

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.55  E-value=0.018  Score=42.55  Aligned_cols=44  Identities=20%  Similarity=0.563  Sum_probs=21.5

Q ss_pred             eeeecccccCCCcceEec--cCCcccHHHHHHHHh-cCCCCCcccccc
Q 013215          361 CCICLAKYANNDELRELP--CSHFFHKDCVDKWLK-INASCPLCKSEV  405 (447)
Q Consensus       361 C~ICL~~y~~~d~lr~LP--C~H~FH~~CId~WL~-~~~tCPlCR~~I  405 (447)
                      |++|.+++ +......+|  |++..+..|...-++ .+..||-||.+.
T Consensus         1 cp~C~e~~-d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEEL-DETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B---CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCccccc-ccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            67899988 444445666  678888888777665 478899999874

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=0.024  Score=57.77  Aligned_cols=49  Identities=35%  Similarity=0.568  Sum_probs=42.6

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      .||..|+||...   +-.....||+|.=|+.||.+-|-.++.|=.||..+..
T Consensus       420 sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            678899999654   4445789999999999999999999999999998875

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.31  E-value=0.014  Score=58.97  Aligned_cols=49  Identities=27%  Similarity=0.593  Sum_probs=40.1

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ...|.+|-.=|-|..  .+.-|-|-||+.||.+.|..+.+||.|...|.+.
T Consensus        15 ~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   15 HITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             ceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            457999976666652  2334999999999999999999999999888775

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.29  E-value=0.051  Score=54.99  Aligned_cols=49  Identities=22%  Similarity=0.465  Sum_probs=38.9

Q ss_pred             ccCCCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcCCCCCcccccc
Q 013215          354 ISGEDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEV  405 (447)
Q Consensus       354 ~s~ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I  405 (447)
                      +..+..+|++|+.+-.++   ..|. -|-+||..||-+.+.....||+=-.++
T Consensus       296 l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  296 LPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             CCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            345667899999997776   4444 389999999999999999999855444

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.29  E-value=0.019  Score=61.15  Aligned_cols=50  Identities=22%  Similarity=0.628  Sum_probs=39.7

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHh-----cCCCCCccccccCCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK-----INASCPLCKSEVGDTV  409 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-----~~~tCPlCR~~I~~~~  409 (447)
                      +..+|-+|-+.-++.   .+..|.|.||+.||..+..     .+-+||.|-..+.-+.
T Consensus       535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL  589 (791)
T ss_pred             CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence            356799998765554   7788999999999988873     3788999988776653

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.18  E-value=0.0034  Score=64.40  Aligned_cols=52  Identities=25%  Similarity=0.652  Sum_probs=46.6

Q ss_pred             ceeeeecccccCC-CcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215          359 AVCCICLAKYANN-DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL  410 (447)
Q Consensus       359 ~~C~ICL~~y~~~-d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  410 (447)
                      ..|+||.+.|... +.+..+-|+|.+|.+||.+||.....||.|+.++.....
T Consensus       197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~~  249 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNGF  249 (465)
T ss_pred             hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhhH
Confidence            3499999999887 788899999999999999999888899999999877654

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=94.01  E-value=0.048  Score=49.89  Aligned_cols=54  Identities=35%  Similarity=0.719  Sum_probs=37.8

Q ss_pred             CCceeeeecccccCCCcceEeccC-------------CcccHHHHHHHHhc-----------------------------
Q 013215          357 EDAVCCICLAKYANNDELRELPCS-------------HFFHKDCVDKWLKI-----------------------------  394 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~-------------H~FH~~CId~WL~~-----------------------------  394 (447)
                      ||..|+|||+-=.+.   ..|-|.             -.=|..|+|+.-+.                             
T Consensus         1 ed~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (162)
T PF07800_consen    1 EDVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQE   77 (162)
T ss_pred             CCccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccc
Confidence            467899999764444   444453             34589999997631                             


Q ss_pred             --CCCCCccccccCCCCCCCC
Q 013215          395 --NASCPLCKSEVGDTVLGSI  413 (447)
Q Consensus       395 --~~tCPlCR~~I~~~~~~~~  413 (447)
                        +..|||||.+|..+....+
T Consensus        78 ~~~L~CPLCRG~V~GWtvve~   98 (162)
T PF07800_consen   78 QPELACPLCRGEVKGWTVVEP   98 (162)
T ss_pred             cccccCccccCceeceEEchH
Confidence              2349999999999876543

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.90  E-value=0.019  Score=57.19  Aligned_cols=47  Identities=21%  Similarity=0.501  Sum_probs=41.3

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ..|-||...|..+   .+..|+|.|+..|--+=++....|++|-+.+...
T Consensus       242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~  288 (313)
T KOG1813|consen  242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS  288 (313)
T ss_pred             ccccccccccccc---hhhcCCceeehhhhccccccCCcceecccccccc
Confidence            3499999999998   7888999999999999899999999998776543

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.84  E-value=0.067  Score=52.18  Aligned_cols=57  Identities=18%  Similarity=0.351  Sum_probs=49.9

Q ss_pred             CCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcCCCCCccccccCCCCCCCC
Q 013215          357 EDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSI  413 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~~  413 (447)
                      ....|++|.+.+.+...+..|. |+|+|..+|+.+.++....||+|-.++.+......
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~L  277 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGL  277 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEee
Confidence            5678999999999988777775 99999999999999999999999999888765543

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.75  E-value=0.04  Score=56.37  Aligned_cols=44  Identities=25%  Similarity=0.667  Sum_probs=33.0

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG  406 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  406 (447)
                      .+.-|.||+++..+   ...+||+|+=+  |..- -+...+||+||+.|.
T Consensus       304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIR  347 (355)
T ss_pred             CCCceEEecCCccc---eeeecCCcEEE--chHH-HhhCCCCchhHHHHH
Confidence            34569999998777   48999999944  6544 344556999998774

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.18  E-value=0.03  Score=54.43  Aligned_cols=47  Identities=26%  Similarity=0.627  Sum_probs=34.6

Q ss_pred             eeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      .|--|.. +..+++...+.|.|+||..|...=.  ...||+||..|.-..
T Consensus         5 hCn~C~~-~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~   51 (233)
T KOG4739|consen    5 HCNKCFR-FPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQ   51 (233)
T ss_pred             Eeccccc-cCCCCceeeeechhhhhhhhcccCC--ccccccccceeeeee
Confidence            3665543 4458899999999999999975422  227999999965543

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=92.94  E-value=0.072  Score=55.12  Aligned_cols=28  Identities=25%  Similarity=0.942  Sum_probs=22.8

Q ss_pred             cCCcccHHHHHHHHhc-------------CCCCCccccccC
Q 013215          379 CSHFFHKDCVDKWLKI-------------NASCPLCKSEVG  406 (447)
Q Consensus       379 C~H~FH~~CId~WL~~-------------~~tCPlCR~~I~  406 (447)
                      |.-++|.+|+-+|+-.             +.+||.||+...
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            6788999999999932             456999999854

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=92.69  E-value=0.096  Score=52.41  Aligned_cols=52  Identities=31%  Similarity=0.748  Sum_probs=40.5

Q ss_pred             CceeeeecccccCCCc-ceEeccC-----CcccHHHHHHHHh--cCCCCCccccccCCCC
Q 013215          358 DAVCCICLAKYANNDE-LRELPCS-----HFFHKDCVDKWLK--INASCPLCKSEVGDTV  409 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~-lr~LPC~-----H~FH~~CId~WL~--~~~tCPlCR~~I~~~~  409 (447)
                      +..|-||..+...... ..+.||.     +..|..|+++|+.  .+.+|.+|........
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~  137 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVG  137 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecc
Confidence            4789999997765432 5678874     7789999999996  6778999998766553

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=92.27  E-value=0.059  Score=53.76  Aligned_cols=47  Identities=28%  Similarity=0.689  Sum_probs=40.1

Q ss_pred             eeeecccccCCC-cceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          361 CCICLAKYANND-ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       361 C~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      |+||.+.+-+.. .+..++|+|.-|..|.......+-+||+|.. +...
T Consensus       161 cPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~  208 (276)
T KOG1940|consen  161 CPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDM  208 (276)
T ss_pred             CchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHH
Confidence            999998876665 5678999999999999999888899999998 5443

>PF04641 Rtf2: Rtf2 RING-finger

Probab=91.96  E-value=0.14  Score=50.74  Aligned_cols=54  Identities=17%  Similarity=0.468  Sum_probs=42.5

Q ss_pred             CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCCCCC
Q 013215          357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLG  411 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~  411 (447)
                      ....|+|+..+|........| ||||+|-..+|..- +....||+|-.++.+....
T Consensus       112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI  166 (260)
T PF04641_consen  112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDII  166 (260)
T ss_pred             ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEE
Confidence            457799999999665555444 79999999999995 4456799999998876543

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.49  E-value=0.076  Score=53.33  Aligned_cols=44  Identities=30%  Similarity=0.621  Sum_probs=31.3

Q ss_pred             eeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215          360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       360 ~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      .|--|=..  -.-.-|.+||+|+||.+|-..  ...+.||+|-..|.+
T Consensus        92 fCd~Cd~P--I~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vqr  135 (389)
T KOG2932|consen   92 FCDRCDFP--IAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQR  135 (389)
T ss_pred             eecccCCc--ceeeecccccchhhhhhhhhc--CccccCcCcccHHHH
Confidence            45566333  223358899999999999654  456689999887765

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.60  E-value=0.18  Score=47.07  Aligned_cols=50  Identities=26%  Similarity=0.712  Sum_probs=33.3

Q ss_pred             eeeeecccccCC----CcceEeccCCcccHHHHHHHHhc-----------CCCCCccccccCCCC
Q 013215          360 VCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKI-----------NASCPLCKSEVGDTV  409 (447)
Q Consensus       360 ~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~-----------~~tCPlCR~~I~~~~  409 (447)
                      .|-||..---+|    +..--..|+.-||.-|+..||+.           -..||-|..+|.-+.
T Consensus       167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm  231 (234)
T KOG3268|consen  167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM  231 (234)
T ss_pred             cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence            377775322222    12334559999999999999954           134999998876543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.39  E-value=0.27  Score=50.24  Aligned_cols=48  Identities=29%  Similarity=0.704  Sum_probs=36.5

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHH--HhcCCCCCccccccC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKW--LKINASCPLCKSEVG  406 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~W--L~~~~tCPlCR~~I~  406 (447)
                      +|...|.||-+...-   ...+||+|..|--|--+-  |-....||+||.+-.
T Consensus        59 Een~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          59 EENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             cccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            345569999877654   479999999999996543  456788999998743

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.93  E-value=0.035  Score=55.25  Aligned_cols=45  Identities=24%  Similarity=0.624  Sum_probs=32.5

Q ss_pred             CCceeeeecccccCCCcceEeccCCcc-cHHHHHHHHhcCCCCCccccccCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFF-HKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~F-H~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      .+.-|+||++.-.   +...|+|+|.- +.+|-    ++-+.||+||+.|.+.
T Consensus       299 ~~~LC~ICmDaP~---DCvfLeCGHmVtCt~CG----krm~eCPICRqyi~rv  344 (350)
T KOG4275|consen  299 TRRLCAICMDAPR---DCVFLECGHMVTCTKCG----KRMNECPICRQYIVRV  344 (350)
T ss_pred             HHHHHHHHhcCCc---ceEEeecCcEEeehhhc----cccccCchHHHHHHHH
Confidence            3678999987644   45899999974 44554    3345899999987653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.90  E-value=0.16  Score=57.15  Aligned_cols=43  Identities=23%  Similarity=0.696  Sum_probs=33.8

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG  406 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  406 (447)
                      .+|..|--..+-+  ...--|+|.||..|+.   .....||.|+.+..
T Consensus       841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~  883 (933)
T KOG2114|consen  841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPELR  883 (933)
T ss_pred             eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence            4699998776655  4555699999999998   56678999998443

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=89.57  E-value=0.25  Score=37.46  Aligned_cols=45  Identities=22%  Similarity=0.577  Sum_probs=33.8

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ..|..|...=..+   ..+||+|+-...|.+-  .+-+-||+|-.++...
T Consensus         8 ~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    8 QPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFD   52 (55)
T ss_pred             eeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccCC
Confidence            4577776543343   7999999999999775  5566799999888664

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=88.68  E-value=0.17  Score=56.58  Aligned_cols=49  Identities=33%  Similarity=0.659  Sum_probs=39.6

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--CCCCCccccccCCCCCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--NASCPLCKSEVGDTVLG  411 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--~~tCPlCR~~I~~~~~~  411 (447)
                      ..|.||++    .+.....+|+|.|+.+|+.+-+..  ..-||+||..+.....-
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~  505 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL  505 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence            68999998    455678889999999999887744  44699999988776543

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.54  E-value=0.22  Score=49.85  Aligned_cols=52  Identities=27%  Similarity=0.541  Sum_probs=38.9

Q ss_pred             ceeeeecccccCCCcceEec-cCCcccHHHHHHHH-hcCCCCCcccc-ccCCCCCCCC
Q 013215          359 AVCCICLAKYANNDELRELP-CSHFFHKDCVDKWL-KINASCPLCKS-EVGDTVLGSI  413 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL-~~~~tCPlCR~-~I~~~~~~~~  413 (447)
                      ..|..|-.-..+.   .+.| |+|.|+.+||..-| .....||.|.. +|+-+...+.
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD  329 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPD  329 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCcc
Confidence            4599997776666   5557 79999999999776 66888999965 4555554443

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.44  E-value=0.29  Score=47.03  Aligned_cols=40  Identities=28%  Similarity=0.668  Sum_probs=29.1

Q ss_pred             eeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCC
Q 013215          361 CCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       361 C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      |-.|-+   .+..+..|||.|+ ++..|=..    -.+||+|+.....
T Consensus       161 Cr~C~~---~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGE---REATVLLLPCRHLCLCGICDES----LRICPICRSPKTS  201 (207)
T ss_pred             ceecCc---CCceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence            778854   4556899999865 67778654    4559999977654

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=88.36  E-value=0.17  Score=36.39  Aligned_cols=41  Identities=24%  Similarity=0.688  Sum_probs=21.2

Q ss_pred             eeeecccccCCCcceEeccCCcccHHHHHHHHhcCC--CCCcc
Q 013215          361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA--SCPLC  401 (447)
Q Consensus       361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~--tCPlC  401 (447)
                      |.+|-+-.-.|+....-.|+=.+|..|++++++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            445544444453333334777899999999997655  79988

; PDB: 3NW0_A 2CT0_A.

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.29  E-value=0.32  Score=48.67  Aligned_cols=47  Identities=32%  Similarity=0.745  Sum_probs=37.2

Q ss_pred             ceeeeecccccCCCc---ceEeccCCcccHHHHHHHHhc-CCCCCcccccc
Q 013215          359 AVCCICLAKYANNDE---LRELPCSHFFHKDCVDKWLKI-NASCPLCKSEV  405 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~---lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I  405 (447)
                      .+|-||=++|..++.   -+.|-|+|.|+..|+.+-+.. ...||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            359999999987743   356669999999999776644 44599999985

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.36  E-value=0.25  Score=55.91  Aligned_cols=35  Identities=26%  Similarity=0.629  Sum_probs=28.4

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHH
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL  392 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL  392 (447)
                      .+..|.+|...+... ...+-||+|.||++||.+=.
T Consensus       816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             CccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            356799998877654 67899999999999997754

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.33  E-value=0.34  Score=47.66  Aligned_cols=51  Identities=29%  Similarity=0.782  Sum_probs=36.3

Q ss_pred             CceeeeecccccCCCcc-eEecc-----CCcccHHHHHHHHhcC--------CCCCccccccCCC
Q 013215          358 DAVCCICLAKYANNDEL-RELPC-----SHFFHKDCVDKWLKIN--------ASCPLCKSEVGDT  408 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~l-r~LPC-----~H~FH~~CId~WL~~~--------~tCPlCR~~I~~~  408 (447)
                      |..|=||+..=+|+-.- =+-||     +|--|..|+..|+..+        -+||-|+.+....
T Consensus        20 eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv   84 (293)
T KOG3053|consen   20 ERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV   84 (293)
T ss_pred             ceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence            45577999876655322 24576     3899999999999432        2499999987654

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.23  E-value=0.38  Score=48.10  Aligned_cols=29  Identities=21%  Similarity=0.706  Sum_probs=23.8

Q ss_pred             cCCcccHHHHHHHH-------------hcCCCCCccccccCC
Q 013215          379 CSHFFHKDCVDKWL-------------KINASCPLCKSEVGD  407 (447)
Q Consensus       379 C~H~FH~~CId~WL-------------~~~~tCPlCR~~I~~  407 (447)
                      |..++|.+|+.+|+             +.+.+||+||++..-
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci  366 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI  366 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence            67889999999998             246789999998653

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.08  E-value=0.27  Score=36.18  Aligned_cols=32  Identities=25%  Similarity=0.723  Sum_probs=23.6

Q ss_pred             EeccC-CcccHHHHHHHHhcCCCCCccccccCC
Q 013215          376 ELPCS-HFFHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       376 ~LPC~-H~FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      ...|+ |..+..|+...|.+...||+|+.++..
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            55684 999999999999999999999998865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=86.43  E-value=0.5  Score=53.02  Aligned_cols=53  Identities=25%  Similarity=0.695  Sum_probs=39.9

Q ss_pred             CCCceeeeecccccCCCcceEeccC-----CcccHHHHHHHHhc--CCCCCccccccCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCS-----HFFHKDCVDKWLKI--NASCPLCKSEVGDTV  409 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~--~~tCPlCR~~I~~~~  409 (447)
                      +|+..|-||..+=..++++ --||+     -..|.+|+..|+.-  ...|-+|+.++.=+.
T Consensus        10 ~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~   69 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD   69 (1175)
T ss_pred             ccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence            4567799999886666655 45665     56899999999954  455999999876443

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=85.78  E-value=0.49  Score=48.23  Aligned_cols=53  Identities=23%  Similarity=0.583  Sum_probs=36.3

Q ss_pred             CCceeeeecccccCCCc-ceEeccCCcccHHHHHHHH-hcCCCCCccccccCCCC
Q 013215          357 EDAVCCICLAKYANNDE-LRELPCSHFFHKDCVDKWL-KINASCPLCKSEVGDTV  409 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~-lr~LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~~  409 (447)
                      |++.|+.|++++.-.|+ ...-||+--.|.-|..--- .-+..||-||+...+..
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            44559999999876553 4556688665666643322 23788999999887754

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.76  E-value=0.22  Score=54.44  Aligned_cols=48  Identities=31%  Similarity=0.598  Sum_probs=35.4

Q ss_pred             ceeeeecccccCCCcc-eEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          359 AVCCICLAKYANNDEL-RELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~l-r~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      ..|.||+..|...... +-|-|+|.-|..|+.+  -.|++|| |+++=.+..
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~De~~~~   60 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKRDEDSSL   60 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCccccchh
Confidence            4588999998876422 3444999999999987  4578899 877654443

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=83.95  E-value=0.3  Score=57.27  Aligned_cols=49  Identities=37%  Similarity=0.651  Sum_probs=39.7

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ...|.||++.....  -...-|+|.|++.|...|+..+..||.|+......
T Consensus      1153 ~~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~df 1201 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYASSRCPICKSIKGDF 1201 (1394)
T ss_pred             ccchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHhccCcchhhhhhhh
Confidence            44799999998733  14566999999999999999999999999544443

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.71  E-value=0.71  Score=50.57  Aligned_cols=52  Identities=35%  Similarity=0.812  Sum_probs=42.6

Q ss_pred             ccCCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCCC
Q 013215          354 ISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGS  412 (447)
Q Consensus       354 ~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~  412 (447)
                      +......|.||+.+.    ..+..+|.   |..|+.+|+..+..||+|...+..+....
T Consensus       475 l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~  526 (543)
T KOG0802|consen  475 LREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLS  526 (543)
T ss_pred             hhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccC
Confidence            344556799999988    56788899   89999999999999999998887765433

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=81.86  E-value=0.79  Score=46.49  Aligned_cols=45  Identities=22%  Similarity=0.648  Sum_probs=36.0

Q ss_pred             CCCceeeeecccccCCCcceEecc--CCcccHHHHHHHHhcCCCCCccccccCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPC--SHFFHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC--~H~FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      .+-.+|+||.+.+..+    ..-|  +|+-+..|-.   +....||.||.+++.
T Consensus        46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN   92 (299)
T ss_pred             hhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence            3456799999998887    4557  6999998864   567889999999984

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=81.15  E-value=1.7  Score=32.98  Aligned_cols=43  Identities=28%  Similarity=0.761  Sum_probs=34.8

Q ss_pred             CceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcCCCCCc--cccc
Q 013215          358 DAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPL--CKSE  404 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPl--CR~~  404 (447)
                      ...|.+|-+.|.+++.+.+=| |+-.+|++|-++    ...|-+  |..+
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~   50 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG   50 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence            346999999999888888888 999999999765    666755  6544

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=80.12  E-value=0.47  Score=52.71  Aligned_cols=52  Identities=33%  Similarity=0.653  Sum_probs=42.3

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc---CCCCCccccccCCCCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI---NASCPLCKSEVGDTVLGS  412 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~---~~tCPlCR~~I~~~~~~~  412 (447)
                      ..+|.||+..|.++   ..+.|.|.|...|+..=|..   ...||+|+..+.+.....
T Consensus        21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~E   75 (684)
T KOG4362|consen   21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRE   75 (684)
T ss_pred             hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccc
Confidence            46799999999988   67779999999999887644   446999998888766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	447
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		1e-09
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		1e-08
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		2e-08
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		3e-07
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		4e-07
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		3e-06

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG 406
           E  +C +C+  + +   LR LPC+H FH  CVDKWLK N +CP+C+++ G
Sbjct: 22  EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           C ICL+     +++R LPC H FH+ CVD+WL  N  CP+C+ ++
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCK 402
           G++  C IC ++Y   D   ELPC H+FHK CV  WL+ + +CP+C+
Sbjct: 38  GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 345 AAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSE 404
           ++GTE E V SG +  C +C   YA  + +R+LPC+H FH  C+  WL+ + SCP+C+  
Sbjct: 5   SSGTE-EHVGSGLE--CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61
Query: 405 V 405
           +
Sbjct: 62  L 62

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           +C +CL  +   DEL   PC H FH+ C+ KWL++   CPLC   V
Sbjct: 17  LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 361 CCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEV 405
           C +CLA+  + +E R LP C H FH +CVD WL  +++CPLC+  V
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	4e-28
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	6e-26
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	3e-25
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	8e-25
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-21
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	7e-21
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	7e-19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	8e-16
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	7e-15
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	1e-12
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-11
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	6e-11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	3e-10
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	5e-10
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-08
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-08
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-08
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	3e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	6e-08
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	9e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-07
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	5e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	4e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	5e-04
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	5e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	9e-06
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	3e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	4e-05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	5e-05
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	6e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	6e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	8e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	2e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-04
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	4e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-04
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	7e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  105 bits (263), Expect = 4e-28
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 28/98 (28%)

Query: 308 ATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAK 367
            ++ S   LP+Y+F                                   E  +C +C+  
Sbjct: 1   GSSGSSGQLPSYRFNPNNH----------------------------QSEQTLCVVCMCD 32

Query: 368 YANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           + +   LR LPC+H FH  CVDKWLK N +CP+C+++ 
Sbjct: 33  FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 99.0 bits (247), Expect = 6e-26
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 350 KERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           +E      +  C ICL+     +++R LPC H FH+ CVD+WL  N  CP+C+ ++
Sbjct: 6   EEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 97.1 bits (242), Expect = 3e-25
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 341 GGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPL 400
           G   ++G  KE        +C +CL  +   DEL   PC H FH+ C+ KWL++   CPL
Sbjct: 1   GSSGSSGKVKE---LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPL 57

Query: 401 CKSEV--GDTVLGSISG 415
           C   V     + G  SG
Sbjct: 58  CNMPVLQLAQLSGPSSG 74

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 96.6 bits (241), Expect = 8e-25
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 27/101 (26%)

Query: 305 TRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCIC 364
              A+ ESIDALP                                ++    G++  C IC
Sbjct: 14  NPPASKESIDALPEILVT---------------------------EDHGAVGQEMCCPIC 46

Query: 365 LAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
            ++Y   D   ELPC H+FHK CV  WL+ + +CP+C+   
Sbjct: 47  CSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 87.1 bits (216), Expect = 2e-21
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 341 GGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPL 400
           G   ++GTE+     G    C +C   YA  + +R+LPC+H FH  C+  WL+ + SCP+
Sbjct: 1   GSSGSSGTEEH---VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPV 57

Query: 401 CKSEV 405
           C+  +
Sbjct: 58  CRKSL 62

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 84.6 bits (210), Expect = 7e-21
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 355 SGEDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEV 405
             +   C +CLA+  + +E R LP C H FH +CVD WL  +++CPLC+  V
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 79.4 bits (196), Expect = 7e-19
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 345 AAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSE 404
           ++G+        ++  CCIC+    +      LPC+H F + C+DKW   + +CP+C+ +
Sbjct: 2   SSGSSGRVKQLTDEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQ 57

Query: 405 VGDT 408
           +   
Sbjct: 58  MTGA 61

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 70.9 bits (174), Expect = 8e-16
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 354 ISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           ++     C ICL     ++    LPC H F   C+ +W++ N +CPLCK  V
Sbjct: 1   MATVAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 67.7 bits (166), Expect = 7e-15
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 358 DAVCCICLAKYANNDEL-RELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
            + C ICL     +  +   LPC H  H+ C ++ LK    CPLC    
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 62.2 bits (151), Expect = 1e-12
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 358 DAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSE 404
              C  C A+    D +     C+H FH  C+  W+K N  CPLC+ +
Sbjct: 26  MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQD 73

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 58.0 bits (140), Expect = 3e-11
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 361 CCICLAKYA----NNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           C IC+  Y+    N   +    C H F   C+   LK   +CP C+ ++
Sbjct: 18  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 57.1 bits (138), Expect = 6e-11
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 356 GEDAVCCICLAKY----ANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           G    C IC+  Y     N   +    C H F   C+   LK   +CP C+ ++
Sbjct: 1   GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 345 AAGTEKERVISGEDAVCCICLAKYANNDELRE---LPCSHFFHKDCVDKWLKINASCPLC 401
           ++G+      S     C ICL              LPC H F   CV     +   C LC
Sbjct: 2   SSGSSGNTAPSLTVPECAICL------QTCVHPVSLPCKHVFCYLCVKGASWLGKRCALC 55

Query: 402 KSEVGDTVL 410
           + E+ +  L
Sbjct: 56  RQEIPEDFL 64

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 54.5 bits (131), Expect = 5e-10
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 361 CCICLAKYA----NNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           C IC+  Y+    N   +    C H F   C+   LK   +CP C+ ++
Sbjct: 13  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 16/65 (24%)

Query: 357 EDAVCCICLAKYANNDELRE-----LPCSHFFHKDCVDKWLK-----------INASCPL 400
           E+  C IC A   +  E+         C    H  C+++W K               CP 
Sbjct: 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF 366

Query: 401 CKSEV 405
           CK+++
Sbjct: 367 CKAKL 371

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG 406
           C IC   + N        C H+F + C  +  +    C +C    G
Sbjct: 18  CFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 51.8 bits (123), Expect = 2e-08
 Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 15/64 (23%)

Query: 356 GEDAVCCICLAKYANNDELRE---------------LPCSHFFHKDCVDKWLKINASCPL 400
                C IC     +     +                 C+H FH  C+ +WLK    CPL
Sbjct: 46  IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105

Query: 401 CKSE 404
              E
Sbjct: 106 DNRE 109

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408
              +C IC       D      C H F K C+ +    +  CP C   V  T
Sbjct: 14  PYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 15/63 (23%)

Query: 357 EDAVCCICLAKYANNDELRE---------------LPCSHFFHKDCVDKWLKINASCPLC 401
               C IC     +     +                 C+H FH  C+ +WLK    CPL 
Sbjct: 36  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

Query: 402 KSE 404
             E
Sbjct: 96  NRE 98

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 49.8 bits (119), Expect = 6e-08
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT 408
              +C +C   +   D    + C H F K C+ ++L+ +  CP+C  +V  T
Sbjct: 14  PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 50.4 bits (120), Expect = 9e-08
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 9/52 (17%)

Query: 357 EDAVCCICLAKYANNDELRE---LPCSHFFHKDCVDKWLKINASCPLCKSEV 405
            +  C IC       +   E   L C+H F   C+++W+K    CP+C+ ++
Sbjct: 63  NELQCIICS------EYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL-KINASCPLCKSEV 405
           E   C IC+ K    D      CS      C+ +WL +  A CP C++ +
Sbjct: 21  EVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 20/77 (25%)

Query: 351 ERVISGEDAVCCICLAKYANNDE---------------LRELPCSHFFHKDCVDKWLK-- 393
           E +    +  C IC+ K A                    R   CSH FH  C+       
Sbjct: 18  EELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG 77

Query: 394 ---INASCPLCKSEVGD 407
               +  CP CK+  G+
Sbjct: 78  NKDGSLQCPSCKTIYGE 94

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 349 EKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL-KINASCPLCKSEVGD 407
           E    +     +C IC     +   ++  PC H     C+  W       CP C+ E+  
Sbjct: 323 ELYCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379

Query: 408 T 408
           T
Sbjct: 380 T 380

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 4/47 (8%)

Query: 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--NASCPLCKSE 404
           +C IC +            C    H  CV K+ +      CP C   
Sbjct: 17  ICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 355 SGEDAVCCICLAKYANNDELRE----LPCSHFFHKDCVDKWLKINASCPLCKSEV 405
                 C IC+  Y+   +         C H F   C+   LK   +CP C+ ++
Sbjct: 4   GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 357 EDAVCCICLAKY----ANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
               C IC+  Y     N   +    C H F   C+   LK   +CP C+ ++
Sbjct: 71  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 345 AAGTEKERVISGEDAVCCICLAKYANNDELRELPCS-----HFFHKDCVDKWL--KINAS 397
           ++G+    +      +C IC  +  +   L   PC      HF H+ C+ +W+       
Sbjct: 2   SSGSSGTSITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRC 60

Query: 398 CPLCKSE 404
           C LCK E
Sbjct: 61  CELCKYE 67

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 333 DNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL 392
           +  +S+ D     +  +       E   C  C              C H   KDC+D+  
Sbjct: 27  EVLASLKDRPASGSPFQLFLSKVEETFQCICCQELV---FRPITTVCQHNVCKDCLDRSF 83

Query: 393 KINA-SCPLCKSEVG 406
           +    SCP C+ ++G
Sbjct: 84  RAQVFSCPACRYDLG 98

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 10/53 (18%)

Query: 357 EDAVCCICLAKYANNDELRE----LPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           +   C IC       +          CSH +   C+ K+L     CP C   V
Sbjct: 21  DLLRCGICF------EYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 10/54 (18%)

Query: 357 EDAVCCICLAKYANNDELRE---LPCSHFFHKDCVDKWLKINA-SCPLCKSEVG 406
           +  +C  C       + + +     C H   KDC+ +  K    SCP C+ ++G
Sbjct: 77  QSFMCVCCQ------ELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 4/70 (5%)

Query: 337 SIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-- 394
           ++    ++               +C IC +            C    H  CV K+ +   
Sbjct: 159 TLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNA 216

Query: 395 NASCPLCKSE 404
              CP C   
Sbjct: 217 EPRCPHCNDY 226

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 345 AAGTEKERVISGEDAVCCICLAKYANNDELRE---LPCSHFFHKDCVDKWL-KINASCPL 400
           +    K+ + S  +  C IC+      + L E   LPC+H   K C    + K +  CP 
Sbjct: 2   SMALPKDAIPSLSECQCGICM------EILVEPVTLPCNHTLCKPCFQSTVEKASLCCPF 55

Query: 401 CKSEVGD 407
           C+  V  
Sbjct: 56  CRRRVSS 62

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 40.3 bits (94), Expect = 5e-05
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 357 EDAVCCICLAKYANNDELREL--PCSHFFHKDCVDKWL-KINASCPLCKS 403
           +D  C  C      N  L+ +   C H   + CVD    +   +CP C +
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGT 51

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 10/55 (18%)

Query: 357 EDAVCCICLAKYANNDELRELPCS-----HFFHKDCVDKWLKI--NASCPLCKSE 404
           +  VC IC          R   C         H+ C+  WL I  N +C +C   
Sbjct: 5   DVPVCWICNE---ELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
            C  C A+       + LPC H     C++        CP+C++  
Sbjct: 8   RCQQCQAEA---KCPKLLPCLHTLCSGCLE---ASGMQCPICQAPW 47

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 345 AAGTEKERVISGEDAVCCICLAKYANNDEL-RELPCSHFFHKDCVDKWLKINA---SCPL 400
           ++G+        E   C IC+  +       + L C H   + C++K L  +     CP 
Sbjct: 2   SSGSSGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPF 61

Query: 401 CKSEVGDTVLGSISG 415
           C      T + S++ 
Sbjct: 62  CSKI---TRITSLTQ 73

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINAS-CPLCKSEVGDTVLGSISG 415
           +   C IC        +  E  C H F + C+ + LK+  S CP C+     T L S   
Sbjct: 22  KSISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVK 78

Query: 416 ANARILGSI 424
           +   IL S+
Sbjct: 79  SFLNILNSL 87

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 357 EDAVCCICLAKYANNDE-LRELPCSHFFHKDCVDKWLK-INASCPLCKSEVGD 407
           +   C +C+     +D       C +   + C  +     N  CP C+    +
Sbjct: 10  DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           +   C  C       + +    C H F  +CV   +     CP+C +  
Sbjct: 21  KLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPA 65

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 10/53 (18%)

Query: 357 EDAVCCICLAKYANNDELRE---LPCSHFFHKDCVDKWLKI-NASCPLCKSEV 405
           +   C  C         L       C H F + C+   L   +  C  C+  +
Sbjct: 14  DKYKCEKCH------LVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINAS-CPLCKSEV 405
               C ICL          + PC H F K C+ K ++     CP+    +
Sbjct: 17  SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 8/50 (16%)

Query: 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--------NASCPLCK 402
           C +CL +Y          C   F   C+ +++++          SCP   
Sbjct: 8   CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.8 bits (89), Expect = 9e-04
 Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 168 EPDSVQSRNSSARLNAP-AAPFSISVPRTSE 197
           E  +++   +S +L A  +AP ++++  T E
Sbjct: 18  EKQALKKLQASLKLYADDSAP-ALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.66
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.64
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.53
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.53
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.52
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.52
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.49
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.45
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.42
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.39
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.39
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.38
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.37
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.36
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.32
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.31
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.29
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.27
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.26
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.24
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.24
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.22
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.21
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.21
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.17
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.16
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.14
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.14
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.12
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.12
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.11
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.09
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.08
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.03
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.99
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.99
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.97
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.95
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.9
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.9
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.88
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.88
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.85
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.8
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.79
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.77
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.77
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.76
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.73
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.73
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.71
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.71
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.71
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.67
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.64
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.55
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.55
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.52
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.47
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.45
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.35
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.32
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.28
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.16
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.16
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.99
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.85
3nw0_A	238	Non-structural maintenance of chromosomes element	97.51
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.67
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	93.58
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	91.84
1we9_A	64	PHD finger family protein; structural genomics, PH	84.54
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	83.18
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	82.21

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.66  E-value=4.1e-17  Score=134.43  Aligned_cols=78  Identities=37%  Similarity=0.802  Sum_probs=66.6

Q ss_pred             hhhhcccHhhhhcCCceeeeecccCCCCCCCCCCCCCCCCcccccccccccccCCCceeeeecccccCCCcceEeccCCc
Q 013215          303 AQTRGATAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHF  382 (447)
Q Consensus       303 ~~~rgas~~~I~~LP~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~  382 (447)
                      ...+|++++.|++||.+++......                           ..++..|+||+++|..++.++.|||+|.
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~~~---------------------------~~~~~~C~IC~~~~~~~~~~~~l~C~H~   64 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDHGA---------------------------VGQEMCCPICCSEYVKGDVATELPCHHY   64 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTCSS---------------------------SSSCSEETTTTEECCTTCEEEEETTTEE
T ss_pred             cCCCCCCHHHHHhCCCeeecccccc---------------------------cCCCCCCcccChhhcCCCcEEecCCCCh
Confidence            3567999999999999988653211                           1235679999999999999999999999


Q ss_pred             ccHHHHHHHHhcCCCCCccccccCC
Q 013215          383 FHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       383 FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      ||..||++|++.+.+||+||+++..
T Consensus        65 Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           65 FHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             HHHHHHHHHHHcCCcCcCcCccCCC
Confidence            9999999999999999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=4.9e-17  Score=128.71  Aligned_cols=73  Identities=38%  Similarity=0.981  Sum_probs=61.0

Q ss_pred             cHhhhhcCCceeeeecccCCCCCCCCCCCCCCCCcccccccccccccCCCceeeeecccccCCCcceEeccCCcccHHHH
Q 013215          309 TAESIDALPTYKFKLKKSRSSNDRDNSSSIGDGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCV  388 (447)
Q Consensus       309 s~~~I~~LP~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CI  388 (447)
                      +...+++||.++|+..+..                            .++.+|+||+++|.+++.++.|||+|.||..||
T Consensus         2 s~~~i~~lp~~~~~~~~~~----------------------------~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci   53 (75)
T 1x4j_A            2 SSGSSGQLPSYRFNPNNHQ----------------------------SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCV   53 (75)
T ss_dssp             CCCCCSSCCCEEBCSSSCS----------------------------SSCCEETTTTEECCBTCEEEEETTTEEEETTHH
T ss_pred             cHhhHhhCCcEEecCcccc----------------------------CCCCCCeECCcccCCCCeEEEECCCCHhHHHHH
Confidence            3456788999888753211                            235679999999999999999999999999999


Q ss_pred             HHHHhcCCCCCccccccCCCC
Q 013215          389 DKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       389 d~WL~~~~tCPlCR~~I~~~~  409 (447)
                      ++|++.+.+||+||+++.+..
T Consensus        54 ~~w~~~~~~CP~Cr~~~~~~~   74 (75)
T 1x4j_A           54 DKWLKANRTCPICRADSGPSS   74 (75)
T ss_dssp             HHHHHHCSSCTTTCCCCCCCC
T ss_pred             HHHHHcCCcCcCcCCcCCCCC
Confidence            999999999999999987754

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=5.7e-15  Score=116.22  Aligned_cols=54  Identities=37%  Similarity=0.910  Sum_probs=49.2

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      .++.+|+||++.|.+++.++.|||+|.||..||.+|++.+.+||+||+++....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA   66 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence            346789999999999999999999999999999999999999999999997643

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.53  E-value=3.9e-15  Score=118.37  Aligned_cols=57  Identities=33%  Similarity=0.913  Sum_probs=51.3

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGS  412 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~  412 (447)
                      .++.+|+||++.|.+++.++.|||+|.||..||.+|++.+.+||+||+++.......
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   69 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT   69 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence            346789999999999999999999999999999999999999999999998865543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.52  E-value=3e-15  Score=111.04  Aligned_cols=50  Identities=44%  Similarity=1.038  Sum_probs=46.4

Q ss_pred             CCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcCCCCCccccccC
Q 013215          357 EDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEVG  406 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~  406 (447)
                      ++.+|+||+++|.+++.+..+| |+|.||..||.+|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4567999999999999999998 9999999999999999999999999874

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.52  E-value=6.8e-15  Score=114.25  Aligned_cols=54  Identities=37%  Similarity=1.030  Sum_probs=49.0

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      .++..|+||++.|..++.++.+||+|.||..||.+|++.+.+||+||.++....
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            346679999999999889999999999999999999999999999999987653

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.49  E-value=1.9e-14  Score=122.55  Aligned_cols=60  Identities=30%  Similarity=0.485  Sum_probs=50.2

Q ss_pred             CCceeeeecccccCCC---------------cceEeccCCcccHHHHHHHH-----hcCCCCCccccccCCCCCCCCCcc
Q 013215          357 EDAVCCICLAKYANND---------------ELRELPCSHFFHKDCVDKWL-----KINASCPLCKSEVGDTVLGSISGA  416 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d---------------~lr~LPC~H~FH~~CId~WL-----~~~~tCPlCR~~I~~~~~~~~~~~  416 (447)
                      .+..|+|||+.|.++.               .++.+||+|.||..||++||     +.+.+||+||..+.....+++.+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~  103 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGK  103 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCe
Confidence            3567999999997753               34478899999999999999     557899999999999888777663

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.4e-14  Score=115.39  Aligned_cols=51  Identities=31%  Similarity=0.712  Sum_probs=41.4

Q ss_pred             Cceeeeeccccc-----------CCCcceEec-cCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          358 DAVCCICLAKYA-----------NNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       358 d~~C~ICL~~y~-----------~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      +..|+||+++|.           .++.++.+| |+|.||.+||++||+.+.+||+||+++...
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            455777777764           456677777 999999999999999999999999987643

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.42  E-value=5.9e-14  Score=103.85  Aligned_cols=50  Identities=32%  Similarity=0.754  Sum_probs=44.0

Q ss_pred             CCceeeeecccccCCC-cceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215          357 EDAVCCICLAKYANND-ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG  406 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d-~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  406 (447)
                      ++.+|+||++.|.+++ .+..+||+|.||..||.+|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            4567999999997654 5788999999999999999999999999999874

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.4e-13  Score=111.09  Aligned_cols=57  Identities=32%  Similarity=0.681  Sum_probs=47.3

Q ss_pred             CCCceeeeecccccCCCcceEeccC-----CcccHHHHHHHHhcC--CCCCccccccCCCCCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCS-----HFFHKDCVDKWLKIN--ASCPLCKSEVGDTVLGSI  413 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~-----H~FH~~CId~WL~~~--~tCPlCR~~I~~~~~~~~  413 (447)
                      .++.+|.||+++|++++.+ .+||+     |.||.+||++||+.+  .+||+||+++.......+
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P   76 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG   76 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred             CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence            3456799999999988776 69997     999999999999775  589999999976654433

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.39  E-value=1.4e-13  Score=116.87  Aligned_cols=50  Identities=30%  Similarity=0.588  Sum_probs=43.3

Q ss_pred             CCceeeeecccccCCC---------------cceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215          357 EDAVCCICLAKYANND---------------ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG  406 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d---------------~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  406 (447)
                      ++..|+||++.|.+.-               .++.+||+|.||..||++||+.+.+||+||+++.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            4567999999998651               3677899999999999999999999999999853

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.3e-13  Score=106.34  Aligned_cols=52  Identities=25%  Similarity=0.670  Sum_probs=45.3

Q ss_pred             CCCceeeeecccccCC----CcceEeccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215          356 GEDAVCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      .++.+|+||++.|.+.    +.+..++|+|.||..||++|++.+.+||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            4567899999999875    345789999999999999999999999999998864

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.37  E-value=1.5e-13  Score=106.80  Aligned_cols=55  Identities=24%  Similarity=0.622  Sum_probs=47.6

Q ss_pred             CCCceeeeecccccCC----CcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215          356 GEDAVCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL  410 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  410 (447)
                      .++.+|+||++.|.+.    +....++|+|.||..||++|++.+.+||+||.++.....
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence            3567899999999764    556889999999999999999999999999999986543

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.36  E-value=1.7e-13  Score=104.11  Aligned_cols=53  Identities=25%  Similarity=0.629  Sum_probs=46.3

Q ss_pred             CCceeeeecccccCC----CcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          357 EDAVCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       357 ed~~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      ++.+|+||++.|.++    +.+..++|+|.||..||.+|++.+.+||+||.++....
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            456799999999864    45678999999999999999999999999999987654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2.8e-13  Score=105.91  Aligned_cols=55  Identities=31%  Similarity=0.588  Sum_probs=47.1

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLGSI  413 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~~~  413 (447)
                      .++.+|+||++.|.+.   ..+||+|.||..||.+|++.+.+||+||..+.......+
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p   67 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG   67 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCS
T ss_pred             CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCC
Confidence            3567899999999776   778999999999999999999999999999976544333

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.31  E-value=6.3e-13  Score=102.63  Aligned_cols=50  Identities=38%  Similarity=0.842  Sum_probs=44.0

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ++.+|+||++.+.++  ...+||+|.||..||.+|++.+.+||+||.++...
T Consensus         4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred             CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence            456799999998764  57899999999999999999999999999998643

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=7.7e-13  Score=102.81  Aligned_cols=50  Identities=34%  Similarity=0.949  Sum_probs=44.9

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL  410 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  410 (447)
                      ++.+|+||++.+.+    ..+||+|.||..||.+|++.+.+||+||.++.....
T Consensus        14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred             CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence            46789999999877    789999999999999999999999999999986543

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.27  E-value=4.5e-13  Score=115.66  Aligned_cols=50  Identities=30%  Similarity=0.627  Sum_probs=1.0

Q ss_pred             CCceeeeecccccCC-------------C--cceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215          357 EDAVCCICLAKYANN-------------D--ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG  406 (447)
Q Consensus       357 ed~~C~ICL~~y~~~-------------d--~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  406 (447)
                      +++.|+||+++|.+.             +  .+..++|+|.||..||++||+.+.+||+||+++.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            456799999999763             2  2334689999999999999999999999999854

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=3.1e-12  Score=100.18  Aligned_cols=51  Identities=25%  Similarity=0.570  Sum_probs=44.5

Q ss_pred             CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215          357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL  410 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  410 (447)
                      ++..|+||++.|.+.   ..+ +|+|.||..||.+|++.+.+||+||.++.....
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~   65 (72)
T 2djb_A           14 PYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP   65 (72)
T ss_dssp             GGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred             CCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence            467799999999885   454 999999999999999999999999999987543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=4.8e-12  Score=98.85  Aligned_cols=50  Identities=30%  Similarity=0.646  Sum_probs=43.3

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHh---cCCCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK---INASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~---~~~tCPlCR~~I~~~  408 (447)
                      .++..|+||++.|.+.   ..+||+|.||..||.+|++   .+.+||+||.++...
T Consensus        18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            4567899999999875   6779999999999999997   466899999998765

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=4.7e-12  Score=102.27  Aligned_cols=55  Identities=27%  Similarity=0.609  Sum_probs=47.1

Q ss_pred             CCCceeeeecccccCCCc-ceEeccCCcccHHHHHHHHhcC---CCCCccccccCCCCC
Q 013215          356 GEDAVCCICLAKYANNDE-LRELPCSHFFHKDCVDKWLKIN---ASCPLCKSEVGDTVL  410 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~-lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~I~~~~~  410 (447)
                      .++.+|+||++.|.+.+. .+.|||+|.||..||.+|++.+   .+||+||..+.....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i   71 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL   71 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence            346789999999998664 6788999999999999999876   789999999877543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=5.3e-12  Score=101.00  Aligned_cols=48  Identities=23%  Similarity=0.616  Sum_probs=43.2

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG  406 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  406 (447)
                      .++..|+||++.|.++   ..+||+|.||..||.+|++.+.+||+||.++.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            3467899999999876   57899999999999999999999999999986

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.21  E-value=7.2e-12  Score=98.81  Aligned_cols=51  Identities=20%  Similarity=0.560  Sum_probs=43.4

Q ss_pred             CCCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcC--CCCCccccccCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKIN--ASCPLCKSEVGDTV  409 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~--~tCPlCR~~I~~~~  409 (447)
                      .++..|+||++.|.++   ..+| |+|.||..||.+|++.+  .+||+||.++....
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2yur_A           13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD   66 (74)
T ss_dssp             CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred             CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence            3467899999999987   6799 99999999999999865  68999999765443

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=7.8e-12  Score=96.15  Aligned_cols=50  Identities=18%  Similarity=0.509  Sum_probs=43.3

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHH-hcCCCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL-KINASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL-~~~~tCPlCR~~I~~~  408 (447)
                      .++..|+||++.|.++   ..++|+|.||..||.+|+ +.+.+||+||.++...
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            3567899999999877   448999999999999999 5677999999998765

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.8e-11  Score=97.25  Aligned_cols=55  Identities=22%  Similarity=0.515  Sum_probs=45.1

Q ss_pred             cCCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC--CCCCccccccCCCCCC
Q 013215          355 SGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN--ASCPLCKSEVGDTVLG  411 (447)
Q Consensus       355 s~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~--~tCPlCR~~I~~~~~~  411 (447)
                      .....+|+||.+.+..++...  .|+|.||..||++||+.+  .+||+||++.......
T Consensus        12 ~~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~   68 (74)
T 2ct0_A           12 PDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK   68 (74)
T ss_dssp             SSSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred             cCCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence            344567999999999875444  799999999999999887  8999999987755433

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.16  E-value=5.5e-12  Score=111.31  Aligned_cols=48  Identities=27%  Similarity=0.860  Sum_probs=43.3

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      +..|+||++.|.++   ..+||+|.||..||.+|++.+.+||+||.++...
T Consensus        53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            45699999999876   6899999999999999999999999999998654

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.14  E-value=1.1e-11  Score=106.90  Aligned_cols=55  Identities=24%  Similarity=0.622  Sum_probs=48.1

Q ss_pred             CCCceeeeecccccCC----CcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215          356 GEDAVCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL  410 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  410 (447)
                      .++.+|+||++.|.++    +....++|+|.||..||++|++.+.+||+||..+.....
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l   63 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   63 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence            4567899999999865    556889999999999999999999999999999977654

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=3.6e-11  Score=91.42  Aligned_cols=43  Identities=30%  Similarity=0.686  Sum_probs=38.0

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHh---cCCCCCcc
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK---INASCPLC  401 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~---~~~tCPlC  401 (447)
                      .++..|+||++.|.++   ..+||+|.||..||.+|++   .+.+||+|
T Consensus        18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4567899999999876   6789999999999999998   56789998

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=4e-11  Score=95.73  Aligned_cols=51  Identities=29%  Similarity=0.627  Sum_probs=44.4

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc------CCCCCccccccCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI------NASCPLCKSEVGDTV  409 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~------~~tCPlCR~~I~~~~  409 (447)
                      .++.+|+||++.|.+.   ..+||+|.||..||.+|++.      ..+||+||..+....
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            3567899999999876   56799999999999999987      889999999988643

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.12  E-value=4.7e-11  Score=95.33  Aligned_cols=50  Identities=24%  Similarity=0.577  Sum_probs=44.1

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc------CCCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI------NASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~------~~tCPlCR~~I~~~  408 (447)
                      .++..|+||++.|.++   ..+||+|.||..||.+|++.      ...||+||.++...
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            3567899999999887   57899999999999999987      77899999998764

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.11  E-value=1.4e-11  Score=97.63  Aligned_cols=50  Identities=28%  Similarity=0.580  Sum_probs=43.6

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-------CCCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-------NASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-------~~tCPlCR~~I~~~  408 (447)
                      .++..|+||++.|.++   ..|||+|.||..||.+|++.       ..+||+||.++...
T Consensus        10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            3467899999999886   56899999999999999987       67899999998764

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.09  E-value=3.4e-11  Score=95.37  Aligned_cols=50  Identities=18%  Similarity=0.399  Sum_probs=44.3

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  408 (447)
                      .++..|+||++.|.++   ..+||+|.||..||.+|++. +.+||+||.++...
T Consensus         6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            3467899999999887   67899999999999999987 88999999998765

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.09  E-value=1.4e-11  Score=102.88  Aligned_cols=50  Identities=30%  Similarity=0.683  Sum_probs=43.4

Q ss_pred             CCceeeeecccccCCCcceE-eccCCcccHHHHHHHHhcC-CCCCccccccCCCC
Q 013215          357 EDAVCCICLAKYANNDELRE-LPCSHFFHKDCVDKWLKIN-ASCPLCKSEVGDTV  409 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~-LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~~  409 (447)
                      ++..|+||++.|.++   .. ++|+|.||..||.+|++.+ .+||+||.++....
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (100)
T 3lrq_A           21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE   72 (100)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence            456799999999875   45 8999999999999999887 79999999996644

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=5.1e-11  Score=88.71  Aligned_cols=43  Identities=30%  Similarity=0.869  Sum_probs=37.3

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHH---hcCCCCCcc
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWL---KINASCPLC  401 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL---~~~~tCPlC  401 (447)
                      .++..|+||++.|.++   ..|||+|.||..||.+|+   +.+.+||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3467899999999887   568999999999999995   467889998

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.06  E-value=6.8e-11  Score=90.56  Aligned_cols=53  Identities=26%  Similarity=0.520  Sum_probs=43.1

Q ss_pred             CCceeeeecc-cccCCCcc-eEeccCCcccHHHHHHHHhc-CCCCCccccccCCCC
Q 013215          357 EDAVCCICLA-KYANNDEL-RELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTV  409 (447)
Q Consensus       357 ed~~C~ICL~-~y~~~d~l-r~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~  409 (447)
                      ++..|+||++ .|.++... ..++|+|.||..||++|+.. +.+||+||..+.+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   57 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence            3567999999 78777543 45799999999999999754 568999999997654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.06  E-value=3e-11  Score=100.27  Aligned_cols=49  Identities=27%  Similarity=0.636  Sum_probs=43.1

Q ss_pred             CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ++..|+||++.|.++   ..+ ||+|.||..||.+|++.+.+||+||..+...
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   70 (99)
T 2y43_A           21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP   70 (99)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred             CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence            356799999999875   455 8999999999999999999999999998763

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.04  E-value=5.4e-11  Score=102.62  Aligned_cols=54  Identities=24%  Similarity=0.634  Sum_probs=46.3

Q ss_pred             CCCceeeeecccccCC----CcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          356 GEDAVCCICLAKYANN----DELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~----d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      .++..|+||++.|.+.    .....++|+|.||..||++|++.+.+||+||.++.+..
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~  127 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR  127 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence            3467799999999864    34578899999999999999999999999999987653

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.03  E-value=7.5e-11  Score=99.46  Aligned_cols=49  Identities=27%  Similarity=0.756  Sum_probs=43.3

Q ss_pred             CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ++..|+||++.|.++   ..+ ||+|.||..||.+|++.+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            456799999999875   455 9999999999999999999999999998764

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.99  E-value=1.1e-10  Score=100.86  Aligned_cols=49  Identities=29%  Similarity=0.649  Sum_probs=42.5

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC-CCCccccccCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA-SCPLCKSEVGDT  408 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~  408 (447)
                      ++..|+||++.|.++   ..+||+|.||..||..|++.+. +||+||.++...
T Consensus        51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  100 (124)
T 3fl2_A           51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRS  100 (124)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCC
Confidence            346799999999977   6789999999999999998544 899999999773

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.99  E-value=2e-10  Score=93.72  Aligned_cols=49  Identities=20%  Similarity=0.602  Sum_probs=42.4

Q ss_pred             CCCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcC--CCCCccccccCC
Q 013215          356 GEDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKIN--ASCPLCKSEVGD  407 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~--~tCPlCR~~I~~  407 (447)
                      .++..|+||++.|.++   ..+| |+|.||..||.+|++.+  .+||+||.++..
T Consensus        11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   62 (92)
T 3ztg_A           11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   62 (92)
T ss_dssp             CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred             CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence            4568899999999987   6889 99999999999999653  689999999743

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.97  E-value=1.5e-10  Score=97.65  Aligned_cols=50  Identities=34%  Similarity=0.662  Sum_probs=42.7

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC---CCCccccccCCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA---SCPLCKSEVGDTVL  410 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~---tCPlCR~~I~~~~~  410 (447)
                      +..|+||++.|.++   ..+||+|.||..||.+|++.+.   +||+||.++.....
T Consensus        21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   73 (112)
T 1jm7_A           21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (112)
T ss_dssp             HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence            45699999999876   4589999999999999998654   89999999887543

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.95  E-value=1.5e-10  Score=104.91  Aligned_cols=49  Identities=31%  Similarity=0.705  Sum_probs=41.9

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGD  407 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~  407 (447)
                      ++..|+||++.|.++  +..+||+|.||..||.+|++. +.+||+||.++..
T Consensus        53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            356799999999875  444499999999999999987 8889999999864

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.90  E-value=9.5e-11  Score=99.83  Aligned_cols=49  Identities=27%  Similarity=0.693  Sum_probs=42.9

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGD  407 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~  407 (447)
                      .++..|+||++.|.++   ..|||+|.||..||.+|++. +.+||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3467899999999876   67899999999999999976 7789999999864

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.90  E-value=2.8e-10  Score=102.12  Aligned_cols=49  Identities=27%  Similarity=0.634  Sum_probs=43.0

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC-CCCccccccCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA-SCPLCKSEVGDTV  409 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~~  409 (447)
                      +..|+||++.|.++   ..+||+|.||..||..|++... +||+||.++....
T Consensus        78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~  127 (150)
T 1z6u_A           78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY  127 (150)
T ss_dssp             HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTC
T ss_pred             CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCC
Confidence            46799999999887   5689999999999999998754 8999999998763

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.88  E-value=2e-10  Score=97.96  Aligned_cols=51  Identities=31%  Similarity=0.615  Sum_probs=44.3

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVLG  411 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~~  411 (447)
                      +..|+||++.|.++   ..+||+|.||..||.+|++. +.+||+||.++......
T Consensus        23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~   74 (116)
T 1rmd_A           23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE   74 (116)
T ss_dssp             HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred             CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence            46799999999876   56899999999999999987 78999999999876543

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.88  E-value=3.3e-10  Score=97.13  Aligned_cols=50  Identities=26%  Similarity=0.537  Sum_probs=43.5

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC-CCCccccccCCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA-SCPLCKSEVGDTV  409 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~~  409 (447)
                      ++..|+||++.|.++   ..++|+|.||..||.+|++.+. +||+||.++....
T Consensus        17 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   67 (118)
T 3hct_A           17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ   67 (118)
T ss_dssp             GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence            456799999999887   6689999999999999998765 9999999987643

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.85  E-value=5.9e-10  Score=85.71  Aligned_cols=48  Identities=25%  Similarity=0.501  Sum_probs=40.9

Q ss_pred             CCceeeeecccccCCCcceEe--ccCCc-ccHHHHHHHHhcCCCCCccccccCC
Q 013215          357 EDAVCCICLAKYANNDELREL--PCSHF-FHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~L--PC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      ++.+|.||++.+.+.   ..+  ||+|. |+.+|+.+|.+.+..||+||++|..
T Consensus         7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            456799999987665   444  99999 7999999999999999999998853

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.80  E-value=2e-09  Score=81.94  Aligned_cols=47  Identities=30%  Similarity=0.746  Sum_probs=37.6

Q ss_pred             CCceeeeecccccCCCcceEeccC--C---cccHHHHHHHHhc--CCCCCccccccC
Q 013215          357 EDAVCCICLAKYANNDELRELPCS--H---FFHKDCVDKWLKI--NASCPLCKSEVG  406 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~--H---~FH~~CId~WL~~--~~tCPlCR~~I~  406 (447)
                      +...|.||+++.  ++++ .+||+  |   .||..||++|+..  +.+||+||+++.
T Consensus         5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            456799999983  3445 69965  4   9999999999964  688999998864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.79  E-value=1.1e-09  Score=81.76  Aligned_cols=47  Identities=23%  Similarity=0.522  Sum_probs=40.2

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      ++..|+||++.|.+.   +.|||+|.||..||.+|   ..+||+||+.+....
T Consensus         5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence            456799999999987   78999999999999884   678999999987543

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.77  E-value=2.1e-09  Score=109.99  Aligned_cols=49  Identities=27%  Similarity=0.749  Sum_probs=43.6

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHh-cCCCCCccccccCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLK-INASCPLCKSEVGDTV  409 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~  409 (447)
                      +.+|+||++.+.+.   ..+||+|.||..||..|++ .+.+||+||.++....
T Consensus       332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            46899999998765   7899999999999999998 7889999999987754

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.77  E-value=2.8e-09  Score=85.36  Aligned_cols=54  Identities=17%  Similarity=0.439  Sum_probs=42.5

Q ss_pred             CCCceeeeecccccCCCcceEe--ccCCcccHHHHHHHHh-cCCCCCccccccCCCCC
Q 013215          356 GEDAVCCICLAKYANNDELREL--PCSHFFHKDCVDKWLK-INASCPLCKSEVGDTVL  410 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~L--PC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~~~  410 (447)
                      .++..|+||++.+...+ ...+  +|+|.||..|+.+|++ .+..||+||+.+.....
T Consensus         9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            35678999999986433 2344  4999999999999884 46789999999987654

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.76  E-value=3.2e-09  Score=86.14  Aligned_cols=50  Identities=8%  Similarity=0.128  Sum_probs=45.5

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      .++..|+||++-|.++   ..+||||.|++.||.+|+..+.+||+||.++...
T Consensus        12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            4578899999999998   7899999999999999999999999999988654

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.73  E-value=5.1e-09  Score=87.65  Aligned_cols=51  Identities=8%  Similarity=0.154  Sum_probs=46.4

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      .++..|+||++-|.++   ..+||||.|++.||.+|+..+.+||+||.++....
T Consensus        27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~   77 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM   77 (100)
T ss_dssp             STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred             cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence            5678899999999998   78999999999999999999999999999987643

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.73  E-value=7.7e-09  Score=86.25  Aligned_cols=51  Identities=14%  Similarity=0.134  Sum_probs=46.4

Q ss_pred             CCCceeeeecccccCCCcceEeccC-CcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCS-HFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      .++..|+||++-|.++   ..+||+ |.|++.||.+|+..+.+||+||.++....
T Consensus        20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~   71 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ   71 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred             cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence            5678899999999998   779999 99999999999998999999999987653

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.71  E-value=2.6e-09  Score=81.77  Aligned_cols=47  Identities=26%  Similarity=0.540  Sum_probs=40.2

Q ss_pred             CceeeeecccccCCCcceEe--ccCCc-ccHHHHHHHHhcCCCCCccccccCC
Q 013215          358 DAVCCICLAKYANNDELREL--PCSHF-FHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~L--PC~H~-FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      +..|.||++...+.   ..+  ||+|. |+..|+.+|.+.+.+||+||++|..
T Consensus         7 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            7 LKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             CCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            45699999987664   445  99998 9999999999988999999999853

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.71  E-value=1.7e-09  Score=95.97  Aligned_cols=50  Identities=18%  Similarity=0.373  Sum_probs=42.9

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC-CCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA-SCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~-tCPlCR~~I~~~  408 (447)
                      .++..|+||++.|.++   ..++|+|.||..||.+|++... +||+||.++...
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   79 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE   79 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred             CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence            3567899999999888   6689999999999999998654 899999987543

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.71  E-value=2.1e-09  Score=91.95  Aligned_cols=47  Identities=23%  Similarity=0.537  Sum_probs=41.4

Q ss_pred             CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCC
Q 013215          357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ++..|+||++.|.++   ..+ ||+|.||..||..|++  ..||+||..+...
T Consensus        21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (117)
T ss_dssp             HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence            467899999999877   566 9999999999999998  7899999998553

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.67  E-value=2e-09  Score=84.86  Aligned_cols=45  Identities=27%  Similarity=0.707  Sum_probs=39.0

Q ss_pred             CCceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ++..|.||++.+.+.   ..+||+|. |+..|+.+|    .+||+||.++...
T Consensus        23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   68 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK   68 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred             cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence            456799999988765   78899999 999999998    8899999988653

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.64  E-value=3.7e-09  Score=105.77  Aligned_cols=51  Identities=29%  Similarity=0.744  Sum_probs=40.1

Q ss_pred             CCceeeeecccccCCCcc----e-EeccCCcccHHHHHHHHhcC-----------CCCCccccccCC
Q 013215          357 EDAVCCICLAKYANNDEL----R-ELPCSHFFHKDCVDKWLKIN-----------ASCPLCKSEVGD  407 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~l----r-~LPC~H~FH~~CId~WL~~~-----------~tCPlCR~~I~~  407 (447)
                      +..+|+||++.+.++.++    . -.+|+|.||..||.+||+..           .+||.||++|..
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            456799999999884332    2 24599999999999999752           469999998864

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=3.4e-08  Score=76.80  Aligned_cols=48  Identities=27%  Similarity=0.656  Sum_probs=39.8

Q ss_pred             cCCCceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          355 SGEDAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       355 s~ed~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      ..++..|.||++...+   +..+||+|. |+..|+..    ...||+||.+|....
T Consensus        12 ~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~   60 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESF   60 (68)
T ss_dssp             CCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred             CCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence            3456789999998765   488999999 99999984    578999999987753

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=8.8e-09  Score=81.27  Aligned_cols=45  Identities=27%  Similarity=0.710  Sum_probs=38.0

Q ss_pred             CCceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      ++.+|.||++.+.+.   ..+||+|. |+..|+.+    ...||+||.++...
T Consensus        24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred             CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence            456799999998775   67899999 99999964    47899999998664

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.52  E-value=1.9e-08  Score=91.19  Aligned_cols=50  Identities=26%  Similarity=0.529  Sum_probs=43.2

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC-CCCCccccccCCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN-ASCPLCKSEVGDTV  409 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~~  409 (447)
                      ++..|+||++.|.++   ..++|+|.|+..||.+|++.+ .+||+||.++....
T Consensus        17 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   67 (170)
T 3hcs_A           17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ   67 (170)
T ss_dssp             GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence            457899999999887   568999999999999999764 49999999987653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.47  E-value=4.7e-08  Score=94.35  Aligned_cols=50  Identities=10%  Similarity=0.119  Sum_probs=43.6

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~  408 (447)
                      .++..|+||++-|.++   ..+||+|.|++.||.+|+.. ..+||+||.++...
T Consensus       206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~  256 (281)
T 2c2l_A          206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE  256 (281)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence            4567899999999998   78999999999999999976 45599999998654

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=4.2e-08  Score=80.87  Aligned_cols=49  Identities=18%  Similarity=0.472  Sum_probs=41.4

Q ss_pred             CCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcC------CCCCc--cccc-cCCC
Q 013215          357 EDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKIN------ASCPL--CKSE-VGDT  408 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~------~tCPl--CR~~-I~~~  408 (447)
                      ++..|+||++-|.++   ..+| |+|.|++.||.+|+..+      .+||+  |+.. +...
T Consensus         6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~   64 (94)
T 2yu4_A            6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS   64 (94)
T ss_dssp             SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred             cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence            467799999999988   6786 99999999999999764      58999  9877 5543

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.35  E-value=1.1e-07  Score=78.07  Aligned_cols=48  Identities=23%  Similarity=0.650  Sum_probs=39.5

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--------CCCCCc--cccc
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--------NASCPL--CKSE  404 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--------~~tCPl--CR~~  404 (447)
                      +..+|.||+++|..++-+..++|+|.|+.+|+..+++.        ..+||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            35679999999987765555689999999999999953        247999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.32  E-value=5.8e-08  Score=77.67  Aligned_cols=45  Identities=29%  Similarity=0.722  Sum_probs=38.4

Q ss_pred             CceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      +..|.||++.+.+.   ..+||+|. |+..|+..|    ..||+||.++....
T Consensus        18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~   63 (79)
T 2yho_A           18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQ   63 (79)
T ss_dssp             HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEE
T ss_pred             CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhCeE
Confidence            45799999987664   78999999 999999887    48999999998753

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.28  E-value=2.2e-07  Score=85.68  Aligned_cols=50  Identities=10%  Similarity=0.094  Sum_probs=43.6

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC-CCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN-ASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~  408 (447)
                      +++..|+||++-|.++   ..+||||.|+..||.+|+..+ .+||+|+.++...
T Consensus       104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            4567899999999998   678999999999999999764 5799999988654

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.16  E-value=2.3e-07  Score=93.87  Aligned_cols=46  Identities=26%  Similarity=0.764  Sum_probs=39.9

Q ss_pred             CCCceeeeecccccCCCcceEeccCCc-ccHHHHHHHHhcCCCCCccccccCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHF-FHKDCVDKWLKINASCPLCKSEVGDT  408 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~-FH~~CId~WL~~~~tCPlCR~~I~~~  408 (447)
                      .++..|+||++.+.+.   ..|||+|. ||..|+..|    ..||+||.+|...
T Consensus       293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~  339 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKGT  339 (345)
T ss_dssp             HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred             cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence            4567899999998775   78899999 999999988    7899999998653

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.16  E-value=4.1e-07  Score=69.27  Aligned_cols=50  Identities=12%  Similarity=0.171  Sum_probs=43.8

Q ss_pred             ceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCCCCCccccccCCCCCC
Q 013215          359 AVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINASCPLCKSEVGDTVLG  411 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~  411 (447)
                      ..|+||++-+.++   ..+ +|+|.|-+.||.+||+.+.+||+++.++......
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li   54 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV   54 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence            4699999999987   566 8999999999999999889999999998766544

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.99  E-value=1.6e-06  Score=84.03  Aligned_cols=52  Identities=25%  Similarity=0.498  Sum_probs=43.0

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC--CCCCc--cccccCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN--ASCPL--CKSEVGDTV  409 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~--~tCPl--CR~~I~~~~  409 (447)
                      ..+..|+||++-|.++  |+.+.|||.|++.||.+|++.+  .+||+  ||..+....
T Consensus       179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d  234 (267)
T 3htk_C          179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD  234 (267)
T ss_dssp             BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred             ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence            3467899999999887  4556899999999999999764  57999  999886544

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.85  E-value=5.4e-06  Score=68.80  Aligned_cols=46  Identities=30%  Similarity=0.502  Sum_probs=37.5

Q ss_pred             eeeecccccCCCcceEeccCCcccHHHHHHHHh-cCCCCCccccccCCC
Q 013215          361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLK-INASCPLCKSEVGDT  408 (447)
Q Consensus       361 C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~-~~~tCPlCR~~I~~~  408 (447)
                      |.+|--.+..  ..|.+||+|+|+.+|+..|.+ ...+||.|+.+|..-
T Consensus         4 C~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            4 CDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             CTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred             cCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence            6666555443  469999999999999999985 478899999998764

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.51  E-value=4.1e-05  Score=73.52  Aligned_cols=50  Identities=26%  Similarity=0.578  Sum_probs=40.2

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC--CCCccccccCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA--SCPLCKSEVGDT  408 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~--tCPlCR~~I~~~  408 (447)
                      .-.+|.||.+-...|.....  |+|.||..|+.+|++.+.  +||.|+.+....
T Consensus       179 ~i~~C~iC~~iv~~g~~C~~--C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCSSCEECSS--SCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHhCCcccCc--cChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            35679999998887744332  999999999999997654  899999976554

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=93.58  E-value=0.031  Score=42.84  Aligned_cols=48  Identities=27%  Similarity=0.452  Sum_probs=33.0

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCC----CCCccccccCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINA----SCPLCKSEVGD  407 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~----tCPlCR~~I~~  407 (447)
                      .+.+|.||.+   .++.+.=--|...||..|++..|....    .||.|+.+..+
T Consensus        11 ~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p   62 (66)
T 2lri_C           11 PGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP   62 (66)
T ss_dssp             TTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred             CCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence            4567999964   233222222789999999999886543    59999876543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=91.84  E-value=0.067  Score=43.52  Aligned_cols=35  Identities=17%  Similarity=0.423  Sum_probs=27.0

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHH
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKW  391 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~W  391 (447)
                      ++..|.||+++|.......-++|+|.|+..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            45679999987644433334899999999999984

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=84.54  E-value=0.18  Score=37.86  Aligned_cols=49  Identities=24%  Similarity=0.520  Sum_probs=33.4

Q ss_pred             CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHHh-----cCCCCCcccccc
Q 013215          357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLK-----INASCPLCKSEV  405 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~-----~~~tCPlCR~~I  405 (447)
                      ++..|.||...|.++.....= -|..-||..|+.--..     ..-.||.|+..-
T Consensus         5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~   59 (64)
T 1we9_A            5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS   59 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred             CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcC
Confidence            456799999998655433222 3889999999864321     345699998643

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=83.18  E-value=0.68  Score=37.09  Aligned_cols=34  Identities=21%  Similarity=0.662  Sum_probs=24.2

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHH
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKW  391 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~W  391 (447)
                      .|..|.|| +.|..++.+.---|+-+||..|+.+-
T Consensus        14 ~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           14 NDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCcccCcc-ccccccceeccccccccccHhhcccc
Confidence            57789998 55666533222226899999999996

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=82.21  E-value=0.23  Score=38.42  Aligned_cols=49  Identities=18%  Similarity=0.405  Sum_probs=32.1

Q ss_pred             CceeeeecccccCCCcceEe-ccCCcccHHHHHHHHhc----CCCCCccccccCC
Q 013215          358 DAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKI----NASCPLCKSEVGD  407 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~----~~tCPlCR~~I~~  407 (447)
                      +..|.||-.... ++.+..= -|.--||..|+..-+..    .-.||.|+..+.+
T Consensus        18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k   71 (75)
T 2k16_A           18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK   71 (75)
T ss_dssp             EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred             CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence            455889987753 3222222 27899999999764432    3459999877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	447
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	6e-17
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	9e-13
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	3e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-11
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	6e-09
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	2e-08
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	4e-08
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-07
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	8e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	7e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	1e-04
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	0.004

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 72.2 bits (177), Expect = 6e-17
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 357 EDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEV 405
           +   C +CLA+  + +E R LP C H FH +CVD WL  +++CPLC+  V
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 60.7 bits (147), Expect = 9e-13
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           C ICL     ++    LPC H F   C+ +W++ N +CPLCK  V
Sbjct: 8   CPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 3e-11
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 15/63 (23%)

Query: 357 EDAVCCICLAKYAN---------------NDELRELPCSHFFHKDCVDKWLKINASCPLC 401
               C IC     +                  +    C+H FH  C+ +WLK    CPL 
Sbjct: 20  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79

Query: 402 KSE 404
             E
Sbjct: 80  NRE 82

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 3e-11
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 349 EKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN-ASCPLCKSEVGD 407
           E    +     +C IC        +++  PC H     C+  W +     CP C+ E+  
Sbjct: 14  ELYCEMGSTFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 70

Query: 408 T 408
           T
Sbjct: 71  T 71

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 1e-09
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 357 EDAVCCICLAKYANNDELREL--PCSHFFHKDCVDKWLKIN-ASCPLCKSEV 405
           +D  C  C      N  L+ +   C H   + CVD        +CP C + +
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 6e-09
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           +   C  C A+       + LPC H     C++        CP+C++  
Sbjct: 5   QFLRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 48.3 bits (114), Expect = 2e-08
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 357 EDAVCCICLAKYANNDEL--RELPCSHFFHKDCVDKWLKIN--ASCPLCKSE 404
           +  VC IC  +  N               H+ C+  WL I+   +C +C   
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 4e-08
 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 361 CCICLAKYANND-ELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGD 407
           C +C+     +D       C +   + C  +     N  CP C+    +
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 20/78 (25%)

Query: 350 KERVISGEDAVCCICL---------------AKYANNDELRELPCSHFFHKDCVDKWLK- 393
            E +    +  C IC+                        R   CSH FH  C+      
Sbjct: 17  TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76

Query: 394 ----INASCPLCKSEVGD 407
                +  CP CK+  G+
Sbjct: 77  GNKDGSLQCPSCKTIYGE 94

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 8e-07
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 8/56 (14%)

Query: 355 SGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--------NASCPLCK 402
           S   + C +CL +Y          C   F   C+ +++++          SCP   
Sbjct: 2   SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 7e-06
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWL---KINASCPLCKSEV 405
           C ICL       E     C H F K C+ K L   K  + CPLCK+++
Sbjct: 24  CPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           +   C  C         L    C H F  +CV   +     CP+C +  
Sbjct: 21  KLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCI--GTGCPVCYTPA 65

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 361 CCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVLGSISGANAR 419
           C IC    A+     E  C H F + C+ + LK+  + CP C+     T L S   +   
Sbjct: 26  CQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLN 82

Query: 420 ILGS 423
           IL S
Sbjct: 83  ILNS 86

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 360 VCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEV 405
           +C I          +        F K  +++++K   + P+    +
Sbjct: 2   LCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.66
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.48
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.44
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.4
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.4
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.34
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.11
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.11
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.1
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.07
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.0
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.81
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.78
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.74
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.64
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.31
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	89.12
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	89.09
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	89.02
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	84.97

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.66  E-value=7.4e-18  Score=124.95  Aligned_cols=50  Identities=44%  Similarity=1.038  Sum_probs=46.3

Q ss_pred             CCceeeeecccccCCCcceEec-cCCcccHHHHHHHHhcCCCCCccccccC
Q 013215          357 EDAVCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEVG  406 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~  406 (447)
                      ++.+|+|||++|.+++.++.+| |+|.||.+||++||+.+.+||+||++|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            4567999999999999999886 9999999999999999999999999874

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=8.1e-15  Score=123.39  Aligned_cols=59  Identities=31%  Similarity=0.468  Sum_probs=48.1

Q ss_pred             CCceeeeecccccCC---------------CcceEeccCCcccHHHHHHHHhc-----CCCCCccccccCCCCCCCCCc
Q 013215          357 EDAVCCICLAKYANN---------------DELRELPCSHFFHKDCVDKWLKI-----NASCPLCKSEVGDTVLGSISG  415 (447)
Q Consensus       357 ed~~C~ICL~~y~~~---------------d~lr~LPC~H~FH~~CId~WL~~-----~~tCPlCR~~I~~~~~~~~~~  415 (447)
                      .+..|+||+++|.+.               ..++.++|+|+||.+||++||+.     +.+||+||+.+......++++
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~qP~~  102 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG  102 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCCCCC
Confidence            456799999998642               24667889999999999999975     347999999998888777755

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.44  E-value=1.3e-14  Score=111.62  Aligned_cols=47  Identities=40%  Similarity=0.911  Sum_probs=42.0

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGD  407 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~  407 (447)
                      .+|+||++.|.+.  ++.+||+|.||.+||.+||+.+.+||+||++|..
T Consensus         6 d~C~IC~~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           6 ERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCccCCcCccCC--cEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            4599999999754  5778999999999999999999999999998854

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.7e-14  Score=104.15  Aligned_cols=48  Identities=19%  Similarity=0.449  Sum_probs=41.6

Q ss_pred             eeeeecccccCCCc-ceEeccCCcccHHHHHHHHhc-CCCCCccccccCC
Q 013215          360 VCCICLAKYANNDE-LRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGD  407 (447)
Q Consensus       360 ~C~ICL~~y~~~d~-lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~  407 (447)
                      +|+|||++|..++. ++.++|+|.||.+||++|++. +.+||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            69999999987765 455689999999999999975 5679999999875

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.4e-14  Score=113.38  Aligned_cols=49  Identities=31%  Similarity=0.613  Sum_probs=41.7

Q ss_pred             CceeeeecccccCCC---------------cceEeccCCcccHHHHHHHHhcCCCCCccccccC
Q 013215          358 DAVCCICLAKYANND---------------ELRELPCSHFFHKDCVDKWLKINASCPLCKSEVG  406 (447)
Q Consensus       358 d~~C~ICL~~y~~~d---------------~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~  406 (447)
                      ++.|+||++++.+..               .+..++|+|.||..||++||+.+.+||+||++..
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            345999998886533               3677899999999999999999999999999864

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.9e-13  Score=104.07  Aligned_cols=53  Identities=25%  Similarity=0.492  Sum_probs=42.4

Q ss_pred             CCceeeeecccccCCC--cceEeccCCcccHHHHHHHHhc-CCCCCccccccCCCC
Q 013215          357 EDAVCCICLAKYANND--ELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTV  409 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d--~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~  409 (447)
                      |+..|+||++++..+.  .+..++|+|.||.+||.+||+. +.+||+||+++.+..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            4677999999875443  3456789999999999999955 568999999986643

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4e-13  Score=106.14  Aligned_cols=52  Identities=25%  Similarity=0.668  Sum_probs=43.8

Q ss_pred             CCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCCCCC
Q 013215          357 EDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVLG  411 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~~  411 (447)
                      +...|.||++.+.+.   +.+||+|.||..||.+||+. +.+||+||.+|......
T Consensus        22 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          22 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             CTTBCTTTSSSBCCE---ECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCCCccCCCcCCCe---EEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            345799999988764   78999999999999999974 57899999999876543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.9e-12  Score=93.95  Aligned_cols=47  Identities=23%  Similarity=0.482  Sum_probs=40.3

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTVL  410 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  410 (447)
                      ..+|+||++.|.++   +.|||+|.||..||++|   +.+||+||+++.....
T Consensus         6 ~l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           6 FLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             CCCCcccCcccCCC---EEecCCCHHhHHHHHcC---CCcCcCCCCcccCCCC
Confidence            35799999999876   78899999999999876   6789999999976543

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.11  E-value=1.2e-11  Score=92.23  Aligned_cols=48  Identities=29%  Similarity=0.717  Sum_probs=38.4

Q ss_pred             CCCceeeeecccccCCCcceEecc-----CCcccHHHHHHHHh--cCCCCCccccccC
Q 013215          356 GEDAVCCICLAKYANNDELRELPC-----SHFFHKDCVDKWLK--INASCPLCKSEVG  406 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC-----~H~FH~~CId~WL~--~~~tCPlCR~~I~  406 (447)
                      +++..|.||++++.+.   ...||     .|+||..||.+|++  .+.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            3567899999998765   33444     59999999999994  4678999999875

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=6.9e-12  Score=92.47  Aligned_cols=48  Identities=15%  Similarity=0.263  Sum_probs=42.9

Q ss_pred             eeeeecccccCCCcceEec-cCCcccHHHHHHHHhcCCCCCccccccCCCCC
Q 013215          360 VCCICLAKYANNDELRELP-CSHFFHKDCVDKWLKINASCPLCKSEVGDTVL  410 (447)
Q Consensus       360 ~C~ICL~~y~~~d~lr~LP-C~H~FH~~CId~WL~~~~tCPlCR~~I~~~~~  410 (447)
                      .|+||++.++++   ..+| |+|.||++||.+||+.+.+||+||.++..+..
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dL   50 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   50 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhc
Confidence            499999999887   5665 99999999999999999999999999877654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=2.1e-11  Score=97.63  Aligned_cols=52  Identities=33%  Similarity=0.598  Sum_probs=44.7

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCCCCCCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTVLGSI  413 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~~~~~  413 (447)
                      ..|+||++.|.++   ..+||+|.|+..||.+|++. +.+||+||.++.+....++
T Consensus        24 l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P   76 (86)
T d1rmda2          24 ISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP   76 (86)
T ss_dssp             TBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred             cCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCH
Confidence            5699999999887   78999999999999999975 5689999999987665544

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=6.4e-11  Score=97.54  Aligned_cols=48  Identities=33%  Similarity=0.699  Sum_probs=41.2

Q ss_pred             ceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC---CCCCccccccCCCC
Q 013215          359 AVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN---ASCPLCKSEVGDTV  409 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~---~tCPlCR~~I~~~~  409 (447)
                      ..|+||++.|.++   ..+||+|.||..||.+|++.+   ..||+||.++....
T Consensus        22 l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             cCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            4699999999877   568999999999999999664   47999999986544

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.5e-10  Score=92.89  Aligned_cols=48  Identities=21%  Similarity=0.444  Sum_probs=39.8

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhcCCCCCccccccCCCC
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEVGDTV  409 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~~tCPlCR~~I~~~~  409 (447)
                      ...|+||++.|.++  +...+|+|.||..||.+|+..  +||.||.++....
T Consensus        22 ~l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~~--~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          22 LLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIGT--GCPVCYTPAWIQD   69 (97)
T ss_dssp             TTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTTT--BCSSSCCBCSCSS
T ss_pred             cCCCccCCchhhcC--ceeCCCCCchhHHHHHHHHhc--cccccCCcCchhh
Confidence            45799999999877  444589999999999999954  5999999887643

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.78  E-value=1.3e-09  Score=85.05  Aligned_cols=52  Identities=19%  Similarity=0.383  Sum_probs=45.0

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhcC-CCCCccccccCCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKIN-ASCPLCKSEVGDTVL  410 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~~-~tCPlCR~~I~~~~~  410 (447)
                      +++..|+||++-|.++   ..++|+|.|++.||.+|++.+ .+||.|+.++.....
T Consensus         6 P~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l   58 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL   58 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred             CccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccc
Confidence            3678899999999998   678999999999999999764 579999999876543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=1.4e-09  Score=85.23  Aligned_cols=51  Identities=10%  Similarity=0.107  Sum_probs=44.5

Q ss_pred             CCCceeeeecccccCCCcceEeccCCcccHHHHHHHHhc-CCCCCccccccCCCC
Q 013215          356 GEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI-NASCPLCKSEVGDTV  409 (447)
Q Consensus       356 ~ed~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~-~~tCPlCR~~I~~~~  409 (447)
                      +++..|+||++-|.++   ..+||||.|+..||.+||.. +.+||+||.++....
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~   56 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ   56 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             CccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCccccccccc
Confidence            4678899999999998   67899999999999999965 568999999987653

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1e-08  Score=83.59  Aligned_cols=54  Identities=13%  Similarity=0.145  Sum_probs=47.2

Q ss_pred             cCCCceeeeecccccCCCcceEeccC-CcccHHHHHHHHhcCCCCCccccccCCCCCC
Q 013215          355 SGEDAVCCICLAKYANNDELRELPCS-HFFHKDCVDKWLKINASCPLCKSEVGDTVLG  411 (447)
Q Consensus       355 s~ed~~C~ICL~~y~~~d~lr~LPC~-H~FH~~CId~WL~~~~tCPlCR~~I~~~~~~  411 (447)
                      .+++..|+||++-|.++   ..+||+ |.|.+.||.+||+.+.+||+|+.++......
T Consensus        19 ~P~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~   73 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR   73 (98)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE
T ss_pred             CcHHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccchhhc
Confidence            45689999999999998   789976 5799999999999999999999998776543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.8e-08  Score=77.77  Aligned_cols=46  Identities=22%  Similarity=0.594  Sum_probs=36.8

Q ss_pred             CceeeeecccccCCCcceEeccCCcccHHHHHHHHhc--------CCCCCcccc
Q 013215          358 DAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKI--------NASCPLCKS  403 (447)
Q Consensus       358 d~~C~ICL~~y~~~d~lr~LPC~H~FH~~CId~WL~~--------~~tCPlCR~  403 (447)
                      ..+|.||++++...+.+..++|+|.||.+|+..|++.        .-+||.|+-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            3469999999987766667789999999999999953        125998653

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.12  E-value=0.062  Score=39.86  Aligned_cols=48  Identities=25%  Similarity=0.657  Sum_probs=28.1

Q ss_pred             CCceeeeecccccCCCcceEec--cC-CcccHHHHHHHHhc----CCCCCccccccCC
Q 013215          357 EDAVCCICLAKYANNDELRELP--CS-HFFHKDCVDKWLKI----NASCPLCKSEVGD  407 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~LP--C~-H~FH~~CId~WL~~----~~tCPlCR~~I~~  407 (447)
                      ++..++||..... ++.+...-  |. .-||..|+.  |+.    +-.||.|+.+-.+
T Consensus        14 ~e~~~CiC~~~~~-~~~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~~gp   68 (71)
T d1wesa_          14 NEPTYCLCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDSGP   68 (71)
T ss_dssp             SSCCCSTTCCCCC-SSEECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSCCSC
T ss_pred             CCCCEEEeCCCCC-CCEEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCccccCc
Confidence            3445779987643 33222221  44 469999984  333    3459999865433

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.09  E-value=0.032  Score=40.22  Aligned_cols=51  Identities=25%  Similarity=0.548  Sum_probs=34.7

Q ss_pred             CCceeeeecccccCCCcceEe-ccCCcccHHHHHHHH---h--cCCCCCccccccCC
Q 013215          357 EDAVCCICLAKYANNDELREL-PCSHFFHKDCVDKWL---K--INASCPLCKSEVGD  407 (447)
Q Consensus       357 ed~~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL---~--~~~tCPlCR~~I~~  407 (447)
                      .+..|.||...+.+++....= -|+..||..|+..=.   .  .+-.||.|+..-.+
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~~p   61 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP   61 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcCCC
Confidence            345699999988776653333 389999999986311   1  24569999865433

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.039  Score=37.92  Aligned_cols=43  Identities=28%  Similarity=0.582  Sum_probs=28.1

Q ss_pred             eeeeecccccCCCcceEe-ccCCcccHHHHHHHHhcCC----CCCcccc
Q 013215          360 VCCICLAKYANNDELREL-PCSHFFHKDCVDKWLKINA----SCPLCKS  403 (447)
Q Consensus       360 ~C~ICL~~y~~~d~lr~L-PC~H~FH~~CId~WL~~~~----tCPlCR~  403 (447)
                      .|.||-..-..+ .+..= -|...||..|++.-+....    .||.||.
T Consensus         2 ~C~vC~~~~~~~-~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCC-CEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            488886553333 22221 2789999999998775433    4999974

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.97  E-value=0.16  Score=37.98  Aligned_cols=49  Identities=20%  Similarity=0.473  Sum_probs=31.6

Q ss_pred             ceeeeecccccCCCcceEe---ccCCcccHHHHHH----HHh-----cCCCCCccccccCCC
Q 013215          359 AVCCICLAKYANNDELREL---PCSHFFHKDCVDK----WLK-----INASCPLCKSEVGDT  408 (447)
Q Consensus       359 ~~C~ICL~~y~~~d~lr~L---PC~H~FH~~CId~----WL~-----~~~tCPlCR~~I~~~  408 (447)
                      ...|||-..+.++..+ ..   -|..-||..|+.-    ...     .+-.||.|+..-.+.
T Consensus        16 ~~~C~C~~~~~~~~~i-~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~~ps   76 (78)
T d1wewa_          16 KVRCVCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS   76 (78)
T ss_dssp             CCCCSSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred             ccEeECCCccCCCcEE-EEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcCCCC
Confidence            3445999887665433 44   3889999999831    111     136699998665443