Citrus Sinensis ID: 013216
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | 2.2.26 [Sep-21-2011] | |||||||
| Q99JW2 | 408 | Aminoacylase-1 OS=Mus mus | yes | no | 0.876 | 0.960 | 0.452 | 2e-99 | |
| Q6AYS7 | 408 | Aminoacylase-1A OS=Rattus | yes | no | 0.876 | 0.960 | 0.447 | 4e-99 | |
| Q6PTT0 | 408 | Aminoacylase-1B OS=Rattus | yes | no | 0.863 | 0.946 | 0.446 | 4e-99 | |
| Q55DP8 | 408 | Aminoacylase-1 OS=Dictyos | yes | no | 0.854 | 0.936 | 0.447 | 5e-96 | |
| Q03154 | 408 | Aminoacylase-1 OS=Homo sa | yes | no | 0.863 | 0.946 | 0.441 | 7e-96 | |
| Q5RFB0 | 408 | Aminoacylase-1 OS=Pongo a | yes | no | 0.863 | 0.946 | 0.437 | 2e-95 | |
| P37111 | 407 | Aminoacylase-1 OS=Sus scr | yes | no | 0.865 | 0.950 | 0.436 | 7e-95 | |
| Q55DL1 | 485 | Probable carboxypeptidase | no | no | 0.740 | 0.682 | 0.251 | 7e-19 | |
| Q55FR8 | 519 | Probable carboxypeptidase | no | no | 0.255 | 0.219 | 0.404 | 3e-16 | |
| Q08BT9 | 512 | Probable carboxypeptidase | no | no | 0.259 | 0.226 | 0.376 | 2e-13 |
| >sp|Q99JW2|ACY1_MOUSE Aminoacylase-1 OS=Mus musculus GN=Acy1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 363 bits (931), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 186/411 (45%), Positives = 251/411 (61%), Gaps = 19/411 (4%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY A F+ +A L L Q +E + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGGAITFLEERARQLGLSCQKIEVVPGFVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP LPSILLNSHTDVVP W H PF A DS+G I+ARGSQDMK V +QYLEA+R
Sbjct: 67 GTNPSLPSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGSQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K I S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWVRVTSTGKPGHASRFIEDTAAEKLHKVISSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASR 322
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSASFDFRVAPDVDMKAFEKQLQRWCQEAGE 299
Query: 323 NMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDA 382
+TFE Q KF P +T TD S+PWW A + N L +PEIFPA+TD+
Sbjct: 300 GVTFEFAQ---------KFTEPRMTPTDDSDPWWAAFSGACKAMNLTL-EPEIFPAATDS 349
Query: 383 RYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
RY R G+PA+GFSPM TP+LLHDHNE L++ +L+G+DIY ++ A AS
Sbjct: 350 RYIRAVGIPALGFSPMNRTPVLLHDHNERLHEDIFLRGVDIYTGLLSALAS 400
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Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Mus musculus (taxid: 10090) EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|Q6AYS7|ACY1A_RAT Aminoacylase-1A OS=Rattus norvegicus GN=Acy1a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 184/411 (44%), Positives = 254/411 (61%), Gaps = 19/411 (4%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY +A F+ +A L L Q +E A + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGSAVTFLEERARQLGLSCQKIEVAPGYVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP L SILLNSHTDVVP W H PF A DS+G I+ARG+QDMK V +QYLEA+R
Sbjct: 67 GTNPLLHSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGAQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K + S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWIRVTSTGKPGHASRFIEDTAAEKLHKVVNSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASR 322
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEKQLQSWCQEAGE 299
Query: 323 NMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDA 382
+TFE Q KF P +T TD ++PWW A ++ N L +PEIFPA+TD+
Sbjct: 300 GVTFEFAQ---------KFTEPRMTPTDDTDPWWAAFSGACKEMNLTL-EPEIFPAATDS 349
Query: 383 RYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
RY R G+PA+GFSPM TP+LLHDHNE L++A +L+G+DIY ++ A AS
Sbjct: 350 RYIRAVGIPALGFSPMNRTPVLLHDHNERLHEAVFLRGVDIYTRLVAALAS 400
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Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q6PTT0|ACY1B_RAT Aminoacylase-1B OS=Rattus norvegicus GN=Acy1b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 181/405 (44%), Positives = 248/405 (61%), Gaps = 19/405 (4%)
Query: 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
+ FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L
Sbjct: 13 VTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTL 72
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
SILLNSHTDVVP WSH PF A DS+G I+ RG+QDMKCV +QYLEA++RLK G
Sbjct: 73 SSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYTRGAQDMKCVSIQYLEAVKRLKVEG 132
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
+ R+++++FVPDEE+GGH G E F H F++L G LDEGLA+ T+ + FY+ER
Sbjct: 133 HRFPRTIHMTFVPDEEVGGHQGMELFVQRHEFHALRAGFALDEGLANPTDAFTVFYSERS 192
Query: 211 PWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSV 268
PWW+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SV
Sbjct: 193 PWWVRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSV 251
Query: 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEL 328
N+ L+ G N+ P+ A FD RV P D ++ E ++ A +TFE
Sbjct: 252 NLTKLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEEQLQSWCQEAGEGVTFEF 305
Query: 329 GQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER 388
Q KF P +T TD ++PWW A ++ L +PEIFPA+TD+RY R
Sbjct: 306 AQ---------KFTEPRMTPTDDTDPWWAAFSGACKEMTLTL-EPEIFPAATDSRYIRAV 355
Query: 389 GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
G+PA+GFSPM TP+LLHDHNE L++A +L+G+DIY ++ A AS
Sbjct: 356 GIPALGFSPMNRTPVLLHDHNERLHEAVFLRGVDIYTRLVAALAS 400
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Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q55DP8|ACY1_DICDI Aminoacylase-1 OS=Dictyostelium discoideum GN=acy1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (901), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 180/402 (44%), Positives = 249/402 (61%), Gaps = 20/402 (4%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR +L+I T P PDY +++KF++ +A+ ++ + P++L+K G P L ++
Sbjct: 13 FREFLKIRTDHPTPDYESSTKFLVEKAKEYNIPYEVYR-ETGTPIVLMKIEGLEPNLKTV 71
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSH DVVP+ W PF A D GNIF RG+QDMKCV MQ+LE RR+ SG +
Sbjct: 72 LLNSHVDVVPAVHDSWKVDPFSAWKDESGNIFGRGTQDMKCVCMQFLEVARRIVQSGQKL 131
Query: 154 VRSVYLSFVPDEEIGGH-DGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPW 212
R+++LSFVPDEEIGG G EKF + F LN+G+ LDEGLAS T D+ FY ER PW
Sbjct: 132 KRTLHLSFVPDEEIGGSGKGMEKFVYTEKFRQLNIGLCLDEGLASPTNDFTVFYGERAPW 191
Query: 213 WLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGL----KAEGEVVSV 268
W+ I A G GHG++ + +A+E L ++I + FR QF+ + G K G+V S+
Sbjct: 192 WVHITAVGNAGHGSRFIEGTAIEKLMRTINKMLAFRQEQFESLHHGQHECGKKLGDVTSL 251
Query: 269 NMAFLKAGTP--SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
N+ LKAG P N F N+ P++AEAGFDIR+PPT + + +I +EW A ++F
Sbjct: 252 NLTVLKAGIPIDHSNNFSYNVIPTQAEAGFDIRIPPTVNLDQFLDQI-KEWT-AEEGLSF 309
Query: 327 ELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFR 386
+ + + +T DS N WW +E+ +K + L EIFPA+TD+R+ R
Sbjct: 310 KFASYIPKNE---------MTKLDSDNKWWENFKESCKKMDINL-VTEIFPAATDSRFIR 359
Query: 387 ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESII 428
G+PA GFSP+ NTPILLHDHNEFLN+ YL+GIDI+ II
Sbjct: 360 NLGIPAFGFSPINNTPILLHDHNEFLNEKVYLRGIDIFMGII 401
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Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q03154|ACY1_HUMAN Aminoacylase-1 OS=Homo sapiens GN=ACY1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 179/405 (44%), Positives = 244/405 (60%), Gaps = 19/405 (4%)
Query: 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
+ FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L
Sbjct: 13 VTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTL 72
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
SILLNSHTDVVP WSH PF A DS+G I+ARG+QDMKCV +QYLEA+RRLK G
Sbjct: 73 SSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEG 132
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
+ R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+ + FY+ER
Sbjct: 133 HRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERS 192
Query: 211 PWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSV 268
PWW+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SV
Sbjct: 193 PWWVRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSV 251
Query: 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEL 328
N+ L+ G N+ P+ A FD RV P D ++ E ++ A +T E
Sbjct: 252 NLTKLEGGV------AYNVIPATMSASFDFRVAPDVDFKAFEEQLQSWCQAAGEGVTLEF 305
Query: 329 GQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER 388
Q K+ P +T TD SNPWW + N L +PEI PA+TD RY R
Sbjct: 306 AQ---------KWMHPQVTPTDDSNPWWAAFSRVCKDMNLTL-EPEIMPAATDNRYIRAV 355
Query: 389 GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
G+PA+GFSPM TP+LLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 356 GVPALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLLPALAS 400
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Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q5RFB0|ACY1_PONAB Aminoacylase-1 OS=Pongo abelii GN=ACY1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 349 bits (896), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 244/405 (60%), Gaps = 19/405 (4%)
Query: 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
+ FR YL+I T QP PDY A F +A L L Q +E A + +L WPG+NP L
Sbjct: 13 VTLFRQYLRIRTVQPKPDYGAAVAFFEERARQLGLGCQKVEVAPGYVVTVLTWPGTNPTL 72
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
SILLNSHTDVVP WSH PF A DS+G I+ARG+QDMKC+ +QYLEA+RRLK G
Sbjct: 73 SSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCISIQYLEAVRRLKVEG 132
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
+ R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+ + FY+ER
Sbjct: 133 HRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERS 192
Query: 211 PWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSV 268
PWW+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SV
Sbjct: 193 PWWVRVTSTGRPGHASRFMEDTAAEKLHKVVSSILAFREKEWQRLQSNPHLK-EGSVTSV 251
Query: 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEL 328
N+ L+ G N+ P+ A FD RV P D ++ E ++ A +T E
Sbjct: 252 NLTKLEGGV------AYNVIPATMSASFDFRVAPDVDFKAFEEQLQSWCQAAGEGVTLEF 305
Query: 329 GQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER 388
Q K+ P +T TD SNPWW + L +PEI PA+TD RY R
Sbjct: 306 AQ---------KWMHPQVTPTDDSNPWWAAFSRVCKDMKLTL-EPEIMPAATDNRYIRAV 355
Query: 389 GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
G+PA+GFSPM TP+LLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 356 GIPALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLLPALAS 400
|
Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P37111|ACY1_PIG Aminoacylase-1 OS=Sus scrofa GN=ACY1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 348 bits (892), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 176/403 (43%), Positives = 238/403 (59%), Gaps = 16/403 (3%)
Query: 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
+ FR YL+I T QP PDY A F+ +A L L Q +E + +L WPG+NP L
Sbjct: 13 VTLFRQYLRIRTVQPEPDYGAAVAFLEERARQLGLGCQKVEVVPGHVVTVLTWPGTNPTL 72
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
SILLNSHTDVVP WSH PF D+ G I+ RG+QDMKCV +QYLEA+RRLK G
Sbjct: 73 SSILLNSHTDVVPVFKEHWSHDPFEGFKDADGYIYGRGAQDMKCVSIQYLEAVRRLKVEG 132
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
R+++++FVPDEE+GGH G E F F +L G LDEGLAS T+ + FY+ER
Sbjct: 133 HHFPRTIHMTFVPDEEVGGHQGMELFVKRPEFQALRAGFALDEGLASPTDAFTVFYSERS 192
Query: 211 PWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNM 270
PWWL + + G PGHG++ +++A E L K I S+ FR + +++ G V SVN+
Sbjct: 193 PWWLRVTSTGKPGHGSRFIEDTAAEKLHKVINSILAFREKEKQRLQSNQLKPGAVTSVNL 252
Query: 271 AFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQ 330
L+ G N+ P+ A FD RV P D ++ E ++ A +TFE Q
Sbjct: 253 TMLEGGV------AYNVVPATMSACFDFRVAPDVDLKAFEEQLQSWCQAAGEGVTFEFVQ 306
Query: 331 FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGL 390
K+ +T+TD S+PWW + L + EI PASTDARY R G+
Sbjct: 307 ---------KWMETQVTSTDDSDPWWAAFSGVFKDMKLAL-ELEICPASTDARYIRAAGV 356
Query: 391 PAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
PA+GFSPM +TP+LLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 357 PALGFSPMNHTPVLLHDHDERLHEAVFLRGVDIYTQLLSALAS 399
|
Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q55DL1|CBPS1_DICDI Probable carboxypeptidase S-like 1 OS=Dictyostelium discoideum GN=DDB_G0270582 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 164/389 (42%), Gaps = 58/389 (14%)
Query: 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKC 134
NK +L +W GS+ L +LLNSH DVVP S+W+ +P+G NI+ RGS D K
Sbjct: 88 NKYSLLFEWTGSDKTLKPLLLNSHYDVVPVTESEWTFNPWGE--IRNDNIYGRGSIDNKV 145
Query: 135 VGMQYLEAIRRLKASGF-QPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDE 193
+ M +E+I + A+ + QP+R++YL F DEE+GG +G A N + + DE
Sbjct: 146 IVMATMESIEAILANNYTQPIRTIYLCFGHDEELGGLNGHRMIARHFRENLVRAEAIFDE 205
Query: 194 GLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFD 253
G ++ + + +I G G Y ++ N F ++ ++
Sbjct: 206 GCPFLASNFVPGFHD------IIAGVGVFEKGYLFYKLTSKVNSFTH-SAIPPKESAIGI 258
Query: 254 LVKAGLKAE---------------------GEVVSVNMAFLKAGTPSPNGFVM------- 285
L KA K E GE + N FL A T + M
Sbjct: 259 LSKALAKIESNPFAPIENIEKKNQLLQLFNGETIKSN-PFLDAMTKTTTALSMIHAGTKP 317
Query: 286 NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPI 345
N+ P+ A A R+ E ++ RI++ +T E+ F + + + P
Sbjct: 318 NIIPTTASAWVSHRIINGNSIEYVKSRILD--LINDTRITMEIEGFLEPSPI----SSPF 371
Query: 346 LTATDSSNPWWNLLEEAVRKANGKLG---KPEIFPASTDARYFRERGLPAIGFSPMANT- 401
TA + +L++ + + G P A+TD R++ + F P+
Sbjct: 372 TTA-------YQILKQTIYQQFGGYNVKVVPTQLMANTDTRHYWDITDNIYRFMPIVGNF 424
Query: 402 --PILLHDHNEFLNQAEYLKGIDIYESII 428
+ +H NE ++ +Y+K I Y+ +I
Sbjct: 425 MDFVSIHGSNEKISIDDYIKTIHFYKKLI 453
|
Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 7 EC: . EC: - |
| >sp|Q55FR8|CBPS2_DICDI Probable carboxypeptidase S-like 2 OS=Dictyostelium discoideum GN=DDB_G0267984 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 7/121 (5%)
Query: 79 ILLKWPGSNPQLPSILLNSHTDVVPSE-PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGM 137
++ W G + L ILL H DVVP+ KW+H PF H+D I+ RG+ D K M
Sbjct: 132 LVYNWKGLDESLKPILLAGHIDVVPTLFLDKWTHPPFSGHIDDT-YIWGRGTMDDKGSVM 190
Query: 138 QYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG---IVLDEG 194
LE++ L + GF+P RS+Y +F DEE+GG++GA F + F++ +G +LDEG
Sbjct: 191 AILESVEDLLSQGFKPQRSIYFAFGHDEELGGNNGA--FNINKYFDTNEIGPFEFILDEG 248
Query: 195 L 195
L
Sbjct: 249 L 249
|
Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 7 EC: . EC: - |
| >sp|Q08BT9|P20D1_XENTR Probable carboxypeptidase PM20D1 OS=Xenopus tropicalis GN=pm20d1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQY 139
L K GS+ L +L +H DVVP+ P W PF + G I+ RG+ D K +
Sbjct: 116 LFKVQGSDHNLLPYMLLAHIDVVPAPPESWEVPPFSGE-ERDGYIYGRGTLDDKNCVIGI 174
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLA 196
L+++ L G +P RS Y+ DEEI GH GA+K + + + VLDEGLA
Sbjct: 175 LQSLEFLLKRGHKPRRSFYIGLGHDEEISGHKGAQKIVEKLQSQGVKLAFVLDEGLA 231
|
Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 7 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | ||||||
| 118486005 | 448 | unknown [Populus trichocarpa] | 0.935 | 0.933 | 0.817 | 0.0 | |
| 224102765 | 448 | predicted protein [Populus trichocarpa] | 0.935 | 0.933 | 0.812 | 0.0 | |
| 225428336 | 466 | PREDICTED: aminoacylase-1-like [Vitis vi | 0.970 | 0.931 | 0.772 | 0.0 | |
| 224132462 | 456 | predicted protein [Populus trichocarpa] | 0.941 | 0.923 | 0.805 | 0.0 | |
| 255546696 | 459 | Aminoacylase-1, putative [Ricinus commun | 0.988 | 0.962 | 0.753 | 0.0 | |
| 449444431 | 448 | PREDICTED: aminoacylase-1-like [Cucumis | 0.993 | 0.991 | 0.741 | 0.0 | |
| 356577275 | 449 | PREDICTED: aminoacylase-1-like [Glycine | 0.928 | 0.924 | 0.771 | 0.0 | |
| 30691732 | 433 | Peptidase M20/M25/M40 family protein [Ar | 0.935 | 0.965 | 0.737 | 0.0 | |
| 30691729 | 430 | Peptidase M20/M25/M40 family protein [Ar | 0.928 | 0.965 | 0.730 | 0.0 | |
| 357438965 | 451 | Aminoacylase-1 [Medicago truncatula] gi| | 0.937 | 0.929 | 0.742 | 0.0 |
| >gi|118486005|gb|ABK94846.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/421 (81%), Positives = 380/421 (90%), Gaps = 3/421 (0%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
D +II RF+ YLQI+T+QP P Y ++ F+++QA+ + LESQ++EF +NKPLILLKWPGS
Sbjct: 31 DAAIISRFQQYLQINTAQPTPQYQQSADFLISQAKFIGLESQSIEFVQNKPLILLKWPGS 90
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P LPSILLNSHTDVVP E KW+HHPFGAH+DS GNIFARGSQDMKCVGMQYLEAIRRL
Sbjct: 91 DPTLPSILLNSHTDVVPVEHHKWTHHPFGAHVDSHGNIFARGSQDMKCVGMQYLEAIRRL 150
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
K+SGF P+RSVYLSFVPDEEIGGHDGA KFADS +FNS+NVGIVLDEGLAS E+YR FY
Sbjct: 151 KSSGFVPLRSVYLSFVPDEEIGGHDGAAKFADSDIFNSMNVGIVLDEGLASPDENYRTFY 210
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266
AERCPWW+VIKA GAPGHGAKLYDNSAMENL KSIESVRRFRASQFDLVKAGLKAEGEV+
Sbjct: 211 AERCPWWMVIKATGAPGHGAKLYDNSAMENLLKSIESVRRFRASQFDLVKAGLKAEGEVI 270
Query: 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
SVNM FLKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D ESLERRI EEWAP SRNMTF
Sbjct: 271 SVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPVSRNMTF 330
Query: 327 ELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFR 386
QFKQ+ S+HDK GRP++T TDSSNPWW+LLEEAVRKANGKLGKPEIFPASTDARYFR
Sbjct: 331 ---QFKQQVSIHDKSGRPVVTKTDSSNPWWSLLEEAVRKANGKLGKPEIFPASTDARYFR 387
Query: 387 ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDEASRDE 446
+ GLPAIGFSPMANTPILLHDHNEFLNQ EYLKGI IYE+IIKAYASY++H+ D ++RDE
Sbjct: 388 QLGLPAIGFSPMANTPILLHDHNEFLNQDEYLKGIHIYEAIIKAYASYIEHTSDGSTRDE 447
Query: 447 L 447
L
Sbjct: 448 L 448
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102765|ref|XP_002312793.1| predicted protein [Populus trichocarpa] gi|222849201|gb|EEE86748.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/421 (81%), Positives = 379/421 (90%), Gaps = 3/421 (0%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
D +II RF+ YLQI+T+QP P Y ++ F+++QA+ + LESQ++EF +NKPLILLKWPGS
Sbjct: 31 DAAIISRFQQYLQINTAQPTPQYQQSADFLISQAKFIGLESQSIEFVQNKPLILLKWPGS 90
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P LPSILLNSHTDVVP E KW+HHPFGAH+DS GNIFARGSQDMKCVGMQYLEAIRRL
Sbjct: 91 DPTLPSILLNSHTDVVPVEHHKWTHHPFGAHVDSHGNIFARGSQDMKCVGMQYLEAIRRL 150
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
K+SGF P+RSVYLSFVPDEEIGGHDGA KFADS +FNS+NVGIVLDEGLAS E+YR FY
Sbjct: 151 KSSGFVPLRSVYLSFVPDEEIGGHDGAAKFADSDIFNSMNVGIVLDEGLASPDENYRTFY 210
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266
AERCPWW+VIKA GAPGHGAKLYDNSAMENL KSIESVRRFRASQFDLVKAGLKAEGEV+
Sbjct: 211 AERCPWWMVIKATGAPGHGAKLYDNSAMENLLKSIESVRRFRASQFDLVKAGLKAEGEVI 270
Query: 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
SVNM FLKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D ESLERRI EEWAP SRNMTF
Sbjct: 271 SVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPVSRNMTF 330
Query: 327 ELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFR 386
QFKQ+ S+HDK RP++T TDSSNPWW+LLEEAVRKANGKLGKPEIFPASTDARYFR
Sbjct: 331 ---QFKQQVSIHDKSVRPVVTKTDSSNPWWSLLEEAVRKANGKLGKPEIFPASTDARYFR 387
Query: 387 ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDEASRDE 446
+ GLPAIGFSPMANTPILLHDHNEFLNQ EYLKGI IYE+IIKAYASY++H+ + ++RDE
Sbjct: 388 QLGLPAIGFSPMANTPILLHDHNEFLNQDEYLKGIHIYEAIIKAYASYIEHTSNGSTRDE 447
Query: 447 L 447
L
Sbjct: 448 L 448
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428336|ref|XP_002283140.1| PREDICTED: aminoacylase-1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/439 (77%), Positives = 389/439 (88%), Gaps = 5/439 (1%)
Query: 14 FYQLII----FSSPAKSDDS-IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ 68
FY L I FS+ DDS I+ RF+ YLQI+T+QPNP+Y A+ FI++QA+++SL SQ
Sbjct: 28 FYALFILSLLFSTVGADDDSSIVSRFQRYLQINTAQPNPNYYEAADFIVSQAQSISLHSQ 87
Query: 69 TLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARG 128
TLEF K KP++LLKWPGSNP LPSILLNSHTDVVP+E KW+H PF AH+D G+I+ARG
Sbjct: 88 TLEFVKGKPIVLLKWPGSNPNLPSILLNSHTDVVPAEHHKWTHPPFDAHVDGNGDIYARG 147
Query: 129 SQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG 188
SQDMKCVG+QYLEAIRRLK+SGFQP+R+VYLSFVPDEEIGGHDGAEKFADS F +NVG
Sbjct: 148 SQDMKCVGLQYLEAIRRLKSSGFQPLRTVYLSFVPDEEIGGHDGAEKFADSDEFKKMNVG 207
Query: 189 IVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFR 248
IVLDEGLAS E+YRAFYAER PWWLVI+A GAPGHGAKLYDN+AMEN+ KSIESVRRFR
Sbjct: 208 IVLDEGLASPNENYRAFYAERSPWWLVIRATGAPGHGAKLYDNTAMENILKSIESVRRFR 267
Query: 249 ASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAES 308
A+QFDLVK+GLK+EGEV+SVNM FLKAGTPSP GFVMNLQPSEAEAGFDIR+PPT D S
Sbjct: 268 AAQFDLVKSGLKSEGEVISVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRIPPTADQVS 327
Query: 309 LERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANG 368
LE+RI EEWAPASRNMTFELGQFKQ+ S++DKFG+P+LTATDSSNPWW LLEEAV+K N
Sbjct: 328 LEKRIAEEWAPASRNMTFELGQFKQKVSVYDKFGKPVLTATDSSNPWWTLLEEAVKKVNE 387
Query: 369 KLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESII 428
KLG+PEIFPASTDARYFR+ GLPAIGFSPM NTPILLHDHNEFLNQAEYL+GI+IYESII
Sbjct: 388 KLGRPEIFPASTDARYFRQLGLPAIGFSPMKNTPILLHDHNEFLNQAEYLRGIEIYESII 447
Query: 429 KAYASYVQHSKDEASRDEL 447
KAYAS+ +H++DE ++EL
Sbjct: 448 KAYASFNEHTRDEDRKEEL 466
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132462|ref|XP_002328282.1| predicted protein [Populus trichocarpa] gi|222837797|gb|EEE76162.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/421 (80%), Positives = 378/421 (89%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
D +II RF+ YLQI+T+QP+P Y ++ F+++QA+++ LE Q++EFA+NKPL+LLKWPGS
Sbjct: 36 DAAIISRFQQYLQINTAQPSPLYQQSADFLISQAKSIGLEFQSIEFAQNKPLVLLKWPGS 95
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P LPSILLNSHTDVVP E KW+HHPFGAH+DS GNIFARGSQDMKCVGMQYLEAIRRL
Sbjct: 96 DPTLPSILLNSHTDVVPVEQHKWAHHPFGAHVDSDGNIFARGSQDMKCVGMQYLEAIRRL 155
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
K+SGF P+RSVYLSFVPDEEIG DGA+KFADS +FNS+NVGI LDEGLAS +E+YR FY
Sbjct: 156 KSSGFHPLRSVYLSFVPDEEIGSCDGAKKFADSDIFNSMNVGIALDEGLASPSENYRTFY 215
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266
AER PWWLVIKA G PGHGAKLYDNSAMENL KS+ES+RRFRASQFDLVKAGLKAEGEV
Sbjct: 216 AERNPWWLVIKATGPPGHGAKLYDNSAMENLLKSVESIRRFRASQFDLVKAGLKAEGEVF 275
Query: 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
SVN FLKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D ESLER+ EEWAP SRNMTF
Sbjct: 276 SVNTVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERQFAEEWAPVSRNMTF 335
Query: 327 ELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFR 386
+LGQFK++AS+HDKFGRP+LT TDSSNPWW+LLEEAVRKANGKL KPEIFPASTDARYFR
Sbjct: 336 QLGQFKEKASIHDKFGRPMLTKTDSSNPWWSLLEEAVRKANGKLSKPEIFPASTDARYFR 395
Query: 387 ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDEASRDE 446
E+GLPAIGFSPMANTPILLHDHNEFLNQ EYLKGI+IYESIIKAYASYV +SRDE
Sbjct: 396 EQGLPAIGFSPMANTPILLHDHNEFLNQDEYLKGINIYESIIKAYASYVGDKSTRSSRDE 455
Query: 447 L 447
L
Sbjct: 456 L 456
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546696|ref|XP_002514407.1| Aminoacylase-1, putative [Ricinus communis] gi|223546504|gb|EEF48003.1| Aminoacylase-1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/446 (75%), Positives = 375/446 (84%), Gaps = 4/446 (0%)
Query: 3 NRHRLLHICFVFYQLIIFSSP-AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAE 61
N ++H C + + + + S SII RF+ YLQI+T+QPNP Y A++FI+++A+
Sbjct: 17 NLFLIIHACLILTNPVALAEEDSSSSSSIISRFQQYLQINTAQPNPHYQEAAEFIISEAK 76
Query: 62 ALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQ 121
++ LE Q +E K KPL+LLKW GSNP LPSILL SHTDVVP E KWS+ FGAHLDS
Sbjct: 77 SIGLEFQCIELVKGKPLVLLKWQGSNPTLPSILLYSHTDVVPVEQHKWSYPAFGAHLDSD 136
Query: 122 GNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181
GNI+ARGSQDMKCVGMQYLEA+RRL +SGF P+RSVY+ F PDEEIGGHDGAEKFA S +
Sbjct: 137 GNIYARGSQDMKCVGMQYLEAVRRLMSSGFHPLRSVYILFSPDEEIGGHDGAEKFAHSDI 196
Query: 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSI 241
F S+NVGIVLDEGLAS TE+YR FYAER PWWLVIKA GAPGHGAKLYDNSAMENL KSI
Sbjct: 197 FKSMNVGIVLDEGLASPTEEYRPFYAERSPWWLVIKAIGAPGHGAKLYDNSAMENLLKSI 256
Query: 242 ESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVP 301
E++RRFRASQFDLVK+GLKAEGEVVSVNM LKAGTPSP GFVMNLQPSEAEAGFDIRVP
Sbjct: 257 ETIRRFRASQFDLVKSGLKAEGEVVSVNMVSLKAGTPSPTGFVMNLQPSEAEAGFDIRVP 316
Query: 302 PTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEE 361
P D ESLERRI EEW PASRNMTF QFKQ+A LHDKFGRP+LT TDSSNPWW LLEE
Sbjct: 317 PIADPESLERRIAEEWGPASRNMTF---QFKQKAILHDKFGRPLLTKTDSSNPWWALLEE 373
Query: 362 AVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGI 421
AV+KANGKLGKPEIFPA+TDARYFRE GLPAIGFSPMANTP+LLHDHNEFLNQAEYLKGI
Sbjct: 374 AVQKANGKLGKPEIFPAATDARYFRELGLPAIGFSPMANTPLLLHDHNEFLNQAEYLKGI 433
Query: 422 DIYESIIKAYASYVQHSKDEASRDEL 447
DIY SI+K YASYV H+ E +DEL
Sbjct: 434 DIYASIVKVYASYVNHASSEVVKDEL 459
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444431|ref|XP_004139978.1| PREDICTED: aminoacylase-1-like [Cucumis sativus] gi|449475686|ref|XP_004154523.1| PREDICTED: aminoacylase-1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/449 (74%), Positives = 378/449 (84%), Gaps = 5/449 (1%)
Query: 1 MRNRHRLLHICFVFYQLIIFSSPA--KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILA 58
++ H LL I +F+ L I +S S +II RF+ YLQI+T QP+P Y A+ FI++
Sbjct: 3 FKSLHFLLSIITLFFFLSISTSEQDPSSPSAIISRFQQYLQINTVQPSPQYYEAADFIIS 62
Query: 59 QAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHL 118
QA++LSLES T+EF + KPL++LKWPGSNP+LPSILLNSHTDVVP+E KW+H P GAH+
Sbjct: 63 QAKSLSLESHTIEFVEGKPLVILKWPGSNPELPSILLNSHTDVVPAEHKKWTHPPLGAHI 122
Query: 119 DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD 178
DS GNI+ARGSQDMKCVGMQYLEAIRRLKASGFQP+RSVYLSFVPDEEIGGH GAEKFA+
Sbjct: 123 DSHGNIYARGSQDMKCVGMQYLEAIRRLKASGFQPLRSVYLSFVPDEEIGGHGGAEKFAE 182
Query: 179 SHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLF 238
S F LNV IVLDEGL S E+YR FY E+ PWWLVIKA GAPGHGA+LYDN+A+ENLF
Sbjct: 183 SDEFKKLNVAIVLDEGLPSPGENYRVFYGEKSPWWLVIKAVGAPGHGARLYDNTALENLF 242
Query: 239 KSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298
KSIE+VRRFRASQFDL+KAGLK EG+VVSVNM FLK+G PSP GFVMNLQPSEAEAGFD+
Sbjct: 243 KSIETVRRFRASQFDLIKAGLKTEGDVVSVNMVFLKSGIPSPTGFVMNLQPSEAEAGFDV 302
Query: 299 RVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNL 358
RVPPTT+ ESLERRI EEWAPASRNMTFE FKQ+ S+++KFG+P LTA D SNP WNL
Sbjct: 303 RVPPTTNPESLERRIAEEWAPASRNMTFE---FKQKESIYNKFGKPALTAIDKSNPRWNL 359
Query: 359 LEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYL 418
LEEAVR ANGKL PEIFPASTDARYFR GLPAIGFSPM NTPILLHDHNEFLNQAEYL
Sbjct: 360 LEEAVRNANGKLANPEIFPASTDARYFRNLGLPAIGFSPMVNTPILLHDHNEFLNQAEYL 419
Query: 419 KGIDIYESIIKAYASYVQHSKDEASRDEL 447
KGI++YESIIKAYASY E+ +DEL
Sbjct: 420 KGIEVYESIIKAYASYDGDKPMESFKDEL 448
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577275|ref|XP_003556753.1| PREDICTED: aminoacylase-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/415 (77%), Positives = 362/415 (87%)
Query: 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPS 92
RF+ YL+I+T+QP P Y A+ F+++Q +ALSLESQ++EF KPL+LLKW GSNP LPS
Sbjct: 35 RFQQYLKINTAQPTPRYHEAADFLISQGKALSLESQSIEFVAGKPLVLLKWEGSNPNLPS 94
Query: 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQ 152
ILL SHTDVVPSE SKW+HHPF AHLDS G IF+RGSQDMKCVGMQYLEA+R LK+ F+
Sbjct: 95 ILLYSHTDVVPSEHSKWTHHPFSAHLDSSGRIFSRGSQDMKCVGMQYLEALRLLKSHNFR 154
Query: 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPW 212
P+RS+YL+F PDEEIGGHDGAEKFADS +F S+NVG+VLDEGLAS YR+FYAER PW
Sbjct: 155 PLRSLYLAFSPDEEIGGHDGAEKFADSSIFQSMNVGVVLDEGLASPDPHYRSFYAERSPW 214
Query: 213 WLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAF 272
WLVIKA G PGHGAKLYDNSAMENLFKSIES+RRFR+SQFDL+KAG KAEG+VVSVNM F
Sbjct: 215 WLVIKAFGVPGHGAKLYDNSAMENLFKSIESIRRFRSSQFDLIKAGFKAEGDVVSVNMVF 274
Query: 273 LKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFK 332
LKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D ESLERRI EEWAP+SRNM+F LGQFK
Sbjct: 275 LKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPSSRNMSFTLGQFK 334
Query: 333 QRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPA 392
Q+A DK G+PILT TDSSNPWW LLE AV+KA GKLGKPE+FPA+TD+RYFRERGLPA
Sbjct: 335 QKAHTRDKSGKPILTKTDSSNPWWALLENAVQKAGGKLGKPEVFPAATDSRYFRERGLPA 394
Query: 393 IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDEASRDEL 447
IGFSPMANTP+LLHDHNEFL++ EYLKGI IYESIIK YAS + +D AS+DEL
Sbjct: 395 IGFSPMANTPVLLHDHNEFLHKDEYLKGIKIYESIIKVYASLDDNGRDGASKDEL 449
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30691732|ref|NP_849516.1| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] gi|332661495|gb|AEE86895.1| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/426 (73%), Positives = 361/426 (84%), Gaps = 8/426 (1%)
Query: 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILL 81
S DD+I+ RF+ YL+I+T QPNP+Y A FI++QA+ LSLESQT+EF K KPL+LL
Sbjct: 16 SAVAGDDAIVSRFQEYLRINTVQPNPEYYKAVDFIISQAKPLSLESQTIEFVKGKPLLLL 75
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLE 141
KW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+ARGSQDMKCVGMQYLE
Sbjct: 76 KWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHMDHHGDIYARGSQDMKCVGMQYLE 135
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
AIR+L+ASGF+P+RSVYLSFVPDEEIGGHDGAEKFA+S +F SLN+ IVLDEGL S TE
Sbjct: 136 AIRKLQASGFKPLRSVYLSFVPDEEIGGHDGAEKFAESQLFKSLNIAIVLDEGLPSPTES 195
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKA 261
YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RRFRASQFDL+KAG A
Sbjct: 196 YRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRRFRASQFDLLKAGGIA 255
Query: 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
EG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP+ DAE+LERR+VEEWAPA+
Sbjct: 256 EGDVVSVNMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPSVDAEALERRLVEEWAPAA 315
Query: 322 RNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTD 381
RNM+FELGQFKQ+ + G+ LTA D SNPWW LLE AV++A G+ KPEIFPASTD
Sbjct: 316 RNMSFELGQFKQKLT-----GKQFLTAADDSNPWWGLLENAVKEAGGRTSKPEIFPASTD 370
Query: 382 ARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDE 441
ARYFR+ G+PA GFSP++NTP LLHDHNE+L +AEYLKGI++Y SIIKAYASY S
Sbjct: 371 ARYFRKAGVPAFGFSPISNTPSLLHDHNEYLGKAEYLKGIEVYVSIIKAYASYESKS--- 427
Query: 442 ASRDEL 447
SRDEL
Sbjct: 428 GSRDEL 433
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30691729|ref|NP_568036.2| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] gi|18650600|gb|AAL75900.1| AT4g38220/F20D10_340 [Arabidopsis thaliana] gi|332661494|gb|AEE86894.1| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/426 (73%), Positives = 358/426 (84%), Gaps = 11/426 (2%)
Query: 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILL 81
S DD+I+ RF+ YL+I+T QPNP+Y A FI++QA+ LSLESQT+EF K KPL+LL
Sbjct: 16 SAVAGDDAIVSRFQEYLRINTVQPNPEYYKAVDFIISQAKPLSLESQTIEFVKGKPLLLL 75
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLE 141
KW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+ARGSQDMKCVGMQYLE
Sbjct: 76 KWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHMDHHGDIYARGSQDMKCVGMQYLE 135
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
AIR+L+ASGF+P+RSVYLSFVPDEEIGGHDGAEKFA+S +F SLN+ IVLDEGL S TE
Sbjct: 136 AIRKLQASGFKPLRSVYLSFVPDEEIGGHDGAEKFAESQLFKSLNIAIVLDEGLPSPTES 195
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKA 261
YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RRFRASQFDL+KAG A
Sbjct: 196 YRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRRFRASQFDLLKAGGIA 255
Query: 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
EG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP+ DAE+LERR+VEEWAPA+
Sbjct: 256 EGDVVSVNMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPSVDAEALERRLVEEWAPAA 315
Query: 322 RNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTD 381
RNM+FE FKQ+ + G+ LTA D SNPWW LLE AV++A G+ KPEIFPASTD
Sbjct: 316 RNMSFE---FKQKLT-----GKQFLTAADDSNPWWGLLENAVKEAGGRTSKPEIFPASTD 367
Query: 382 ARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDE 441
ARYFR+ G+PA GFSP++NTP LLHDHNE+L +AEYLKGI++Y SIIKAYASY S
Sbjct: 368 ARYFRKAGVPAFGFSPISNTPSLLHDHNEYLGKAEYLKGIEVYVSIIKAYASYESKS--- 424
Query: 442 ASRDEL 447
SRDEL
Sbjct: 425 GSRDEL 430
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357438965|ref|XP_003589759.1| Aminoacylase-1 [Medicago truncatula] gi|355478807|gb|AES60010.1| Aminoacylase-1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/419 (74%), Positives = 360/419 (85%)
Query: 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNP 88
+II RF+ YLQI T+ P P+YT +S+F+++ +++LSLESQT+E KP+I+LKW G++P
Sbjct: 33 NIISRFQQYLQIKTNHPTPNYTQSSQFLISLSKSLSLESQTIELVPGKPIIILKWAGTSP 92
Query: 89 QLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA 148
+LPSI+L SHTDVVP+E KW HHPF AH+D +G I+ARGSQDMKCV MQYLEA+R LK+
Sbjct: 93 ELPSIMLYSHTDVVPAEHDKWVHHPFKAHVDDEGRIYARGSQDMKCVSMQYLEAVRILKS 152
Query: 149 SGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAE 208
FQP R+VYL F PDEEIGGHDGAEKF+ S F LNVGIVLDEGLAS E YRAFYAE
Sbjct: 153 WDFQPKRTVYLVFAPDEEIGGHDGAEKFSLSKDFQDLNVGIVLDEGLASPDEHYRAFYAE 212
Query: 209 RCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSV 268
R PWWLVIKA GAPGHG+KLYDNSAMENL KSIES+RRFRASQFDL+KAGLKAEG+VVS+
Sbjct: 213 RSPWWLVIKAVGAPGHGSKLYDNSAMENLLKSIESIRRFRASQFDLIKAGLKAEGDVVSI 272
Query: 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEL 328
NMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPPT DAESLERRI EEWAP+ RNM+F L
Sbjct: 273 NMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADAESLERRIAEEWAPSCRNMSFRL 332
Query: 329 GQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER 388
GQFKQ+ S+ D G+P++T TDSSNPWW LLE AV+++ GKLGKPEIFPASTDARYFR
Sbjct: 333 GQFKQKLSVLDASGKPVITKTDSSNPWWALLENAVQESGGKLGKPEIFPASTDARYFRRV 392
Query: 389 GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDEASRDEL 447
GLPAIGFSPMANTPILLHDHNE+L++ EYLKGI +YESIIKAYAS+ + KD S+DEL
Sbjct: 393 GLPAIGFSPMANTPILLHDHNEYLHKDEYLKGIKVYESIIKAYASFDERVKDGTSKDEL 451
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | ||||||
| TAIR|locus:2120958 | 433 | AQI "aquaporin interactor" [Ar | 0.964 | 0.995 | 0.721 | 1e-171 | |
| TAIR|locus:2194884 | 438 | AT1G44820 [Arabidopsis thalian | 0.950 | 0.970 | 0.537 | 5.6e-132 | |
| TAIR|locus:2205846 | 435 | AT1G44180 [Arabidopsis thalian | 0.950 | 0.977 | 0.553 | 1.3e-130 | |
| MGI|MGI:87913 | 408 | Acy1 "aminoacylase 1" [Mus mus | 0.874 | 0.958 | 0.453 | 1e-91 | |
| ZFIN|ZDB-GENE-040426-755 | 420 | acy1 "aminoacylase 1" [Danio r | 0.872 | 0.928 | 0.440 | 3.5e-91 | |
| UNIPROTKB|Q6AYS7 | 408 | Acy1a "Aminoacylase-1A" [Rattu | 0.874 | 0.958 | 0.449 | 4.5e-91 | |
| RGD|2030 | 408 | Acy1 "aminoacylase 1" [Rattus | 0.854 | 0.936 | 0.451 | 1.2e-90 | |
| UNIPROTKB|F1MR63 | 501 | ACY1 "Uncharacterized protein" | 0.854 | 0.762 | 0.459 | 2.5e-90 | |
| UNIPROTKB|B4DNW0 | 498 | ACY1 "cDNA FLJ60317, highly si | 0.854 | 0.767 | 0.446 | 2.5e-88 | |
| UNIPROTKB|Q03154 | 408 | ACY1 "Aminoacylase-1" [Homo sa | 0.854 | 0.936 | 0.446 | 2.5e-88 |
| TAIR|locus:2120958 AQI "aquaporin interactor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1669 (592.6 bits), Expect = 1.0e-171, P = 1.0e-171
Identities = 318/441 (72%), Positives = 369/441 (83%)
Query: 7 LLHICFVFYQLIIFSSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE 66
LL + V +++ S DD+I+ RF+ YL+I+T QPNP+Y A FI++QA+ LSLE
Sbjct: 3 LLRLLLVV--VVLHLSAVAGDDAIVSRFQEYLRINTVQPNPEYYKAVDFIISQAKPLSLE 60
Query: 67 SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFA 126
SQT+EF K KPL+LLKW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+A
Sbjct: 61 SQTIEFVKGKPLLLLKWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHMDHHGDIYA 120
Query: 127 RGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186
RGSQDMKCVGMQYLEAIR+L+ASGF+P+RSVYLSFVPDEEIGGHDGAEKFA+S +F SLN
Sbjct: 121 RGSQDMKCVGMQYLEAIRKLQASGFKPLRSVYLSFVPDEEIGGHDGAEKFAESQLFKSLN 180
Query: 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRR 246
+ IVLDEGL S TE YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RR
Sbjct: 181 IAIVLDEGLPSPTESYRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRR 240
Query: 247 FRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDA 306
FRASQFDL+KAG AEG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP+ DA
Sbjct: 241 FRASQFDLLKAGGIAEGDVVSVNMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPSVDA 300
Query: 307 ESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKA 366
E+LERR+VEEWAPA+RNM+FELGQFKQ+ + G+ LTA D SNPWW LLE AV++A
Sbjct: 301 EALERRLVEEWAPAARNMSFELGQFKQKLT-----GKQFLTAADDSNPWWGLLENAVKEA 355
Query: 367 NGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYES 426
G+ KPEIFPASTDARYFR+ G+PA GFSP++NTP LLHDHNE+L +AEYLKGI++Y S
Sbjct: 356 GGRTSKPEIFPASTDARYFRKAGVPAFGFSPISNTPSLLHDHNEYLGKAEYLKGIEVYVS 415
Query: 427 IIKAYASYVQHSKDEASRDEL 447
IIKAYASY SK SRDEL
Sbjct: 416 IIKAYASY--ESKS-GSRDEL 433
|
|
| TAIR|locus:2194884 AT1G44820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1294 (460.6 bits), Expect = 5.6e-132, P = 5.6e-132
Identities = 230/428 (53%), Positives = 312/428 (72%)
Query: 7 LLHICFVFYQLIIFSSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE 66
LL +F + S + +D+ I RF+ YL+ +T+ PNP+YT F++ QA+++ L
Sbjct: 6 LLWTLIIFSIIFSLQSSSSEEDTPITRFQQYLRFNTAHPNPNYTAPISFLINQAQSIGLT 65
Query: 67 SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFA 126
++T+EF KP++L+ W GSNP LPSIL NSH D VP+E KW++ PF AH G+I+A
Sbjct: 66 TKTIEFISGKPILLITWLGSNPNLPSILFNSHLDSVPAESEKWTYPPFSAHKTIDGHIYA 125
Query: 127 RGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186
RG+QD KC+G+QYLE+IR LK+ GF P+R++++S+VP+EEIGG DG KFA S F LN
Sbjct: 126 RGAQDDKCIGVQYLESIRNLKSRGFSPLRTIHISYVPEEEIGGFDGMMKFAASSEFKDLN 185
Query: 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRR 246
+G +DEG A+ +++R FYA+R PW VIKA G PGHGAKLYDNSAMENL KS+E + R
Sbjct: 186 LGFAMDEGQANPGDEFRVFYADRVPWHFVIKAEGIPGHGAKLYDNSAMENLMKSVELISR 245
Query: 247 FRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDA 306
FR SQFD VKAG A EV+SVN +LKAGTP+ GFVMN+QPSEAEAG+D+R+PP D
Sbjct: 246 FRESQFDFVKAGKAAYSEVISVNPVYLKAGTPTTTGFVMNMQPSEAEAGYDLRLPPMADP 305
Query: 307 ESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKA 366
+ +++RI EEWAP+ RNMT+ + +++ L D GRPI+T + SNPWW++ ++AV
Sbjct: 306 DVMKKRIAEEWAPSIRNMTYSI---QEKGKLRDHLGRPIMTPVNDSNPWWSIFKQAVEAM 362
Query: 367 NGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYES 426
GKL KPEI ++TD+R+ R G+P GFSPM NTPILLHDHNEFL ++KGI++YES
Sbjct: 363 GGKLAKPEILASTTDSRFIRTLGIPTFGFSPMTNTPILLHDHNEFLKDTVFMKGIEVYES 422
Query: 427 IIKAYASY 434
+I A +S+
Sbjct: 423 VISALSSF 430
|
|
| TAIR|locus:2205846 AT1G44180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
Identities = 238/430 (55%), Positives = 309/430 (71%)
Query: 7 LLHICFVFYQLIIFSSPAKSD--DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS 64
LL F+F + S +K + D+ I RF+ YL+ +T+ PNP+YT F+L QA ++
Sbjct: 6 LLWTLFLFSFIFSLQSHSKEEEEDTPITRFQQYLRFNTAHPNPNYTAPISFLLDQARSIG 65
Query: 65 LESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNI 124
L S+T+EF KP++LL W GSN L SIL NSH D VP+E KW H PF AH G+I
Sbjct: 66 LTSRTIEFVPGKPVLLLTWLGSNLNLSSILFNSHLDSVPAESEKWIHPPFSAHRTIDGHI 125
Query: 125 FARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184
+ARG+QD KC+G+QYLEAIR LK+ F P+R++++S+VP+EEIGG G KFA S F
Sbjct: 126 YARGAQDDKCIGVQYLEAIRNLKSRSFSPLRTIHISYVPEEEIGGFGGMMKFAASSEFKD 185
Query: 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESV 244
LN+G V+DEG AS +++R FYAER PW L I+A G PGHGAKLYDNSAMENL KS+E +
Sbjct: 186 LNLGFVMDEGQASPGDEFRVFYAERTPWHLAIRANGMPGHGAKLYDNSAMENLMKSVELI 245
Query: 245 RRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTT 304
RFR SQFD VKAG A EV+SVN +LKAGTPS GFVMN+QPSEAE G+D+R+PP
Sbjct: 246 SRFRESQFDFVKAGKAANSEVISVNPVYLKAGTPSTTGFVMNMQPSEAEVGYDLRLPPMA 305
Query: 305 DAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVR 364
D +L++RI EEWAP+ RNMT+ L KQ+ L D GRPI+T T+ +NPWW++ ++AV
Sbjct: 306 DPVALKKRIAEEWAPSIRNMTYTL---KQQGKLTDHLGRPIMTTTNDTNPWWSIFKQAVE 362
Query: 365 KANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 424
GKL KPEI ++TD+R+ R G+P +GFSPM NTPIL+HDHNEFL ++KGI +Y
Sbjct: 363 ATGGKLAKPEILISTTDSRFIRTLGIPVLGFSPMINTPILVHDHNEFLKDTVFMKGIGVY 422
Query: 425 ESIIKAYASY 434
ES+I A +S+
Sbjct: 423 ESVISALSSF 432
|
|
| MGI|MGI:87913 Acy1 "aminoacylase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 187/412 (45%), Positives = 253/412 (61%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY A F+ +A L L Q +E + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGGAITFLEERARQLGLSCQKIEVVPGFVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP LPSILLNSHTDVVP W H PF A DS+G I+ARGSQDMK V +QYLEA+R
Sbjct: 67 GTNPSLPSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGSQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K I S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWVRVTSTGKPGHASRFIEDTAAEKLHKVISSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-AS 321
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ + W A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSASFDFRVAPDVDMKAFEKQL-QRWCQEAG 298
Query: 322 RNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTD 381
+TFE Q KF P +T TD S+PWW A + N L +PEIFPA+TD
Sbjct: 299 EGVTFEFAQ---------KFTEPRMTPTDDSDPWWAAFSGACKAMNLTL-EPEIFPAATD 348
Query: 382 ARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
+RY R G+PA+GFSPM TP+LLHDHNE L++ +L+G+DIY ++ A AS
Sbjct: 349 SRYIRAVGIPALGFSPMNRTPVLLHDHNERLHEDIFLRGVDIYTGLLSALAS 400
|
|
| ZFIN|ZDB-GENE-040426-755 acy1 "aminoacylase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
Identities = 180/409 (44%), Positives = 251/409 (61%)
Query: 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPG 85
++D + FR YL++ T P PDY A KF+ AE L+L + +E + + ++ W G
Sbjct: 20 AEDPSVTLFREYLRLKTVHPEPDYDAALKFLERMAEELALPMKKVEVCPGRVVAIISWIG 79
Query: 86 SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
S P+L S++LNSHTDVVP W HHPF A D+ GNI+ARG+QDMK V +QY+EAIRR
Sbjct: 80 SRPELKSVVLNSHTDVVPVYEEHWEHHPFAAVKDADGNIYARGAQDMKSVTIQYIEAIRR 139
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAF 205
LKA+G + R+++L+FVPDEE+GGH G E F F LN+G LDEGLA+ T Y F
Sbjct: 140 LKAAGKRFSRTIHLTFVPDEEVGGHKGMETFVKHPEFQKLNMGFALDEGLANPTNAYTVF 199
Query: 206 YAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG-LKAEGE 264
Y ER PWW+ ++ G+PGHG++ +N+A E L + I S FR + + G+
Sbjct: 200 YGERNPWWITVRCPGSPGHGSRFVENTAAEKLRRVINSFLEFREKEKQRLNTSECFTLGD 259
Query: 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA-PASRN 323
V ++NM +K G N+ P+E + FD+R+PPT + + E +I + W A +
Sbjct: 260 VTTINMTMVKGGV------AYNVVPAEMDVSFDLRIPPTVNLQEFEEKI-KVWCREAGED 312
Query: 324 MTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDAR 383
+T++ Q K LT+TD ++PWW + N L K EIFPA+TD+R
Sbjct: 313 VTYDFAQ---------KHMDQNLTSTDENDPWWQAFSSTCKAMNMTL-KKEIFPAATDSR 362
Query: 384 YFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432
+ RE GLPAIGFSPM TPILLHDHNE+LN+ +L+GI +YE +I A A
Sbjct: 363 FIREVGLPAIGFSPMDLTPILLHDHNEYLNEQVFLQGIQVYERLIPALA 411
|
|
| UNIPROTKB|Q6AYS7 Acy1a "Aminoacylase-1A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 185/412 (44%), Positives = 256/412 (62%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY +A F+ +A L L Q +E A + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGSAVTFLEERARQLGLSCQKIEVAPGYVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP L SILLNSHTDVVP W H PF A DS+G I+ARG+QDMK V +QYLEA+R
Sbjct: 67 GTNPLLHSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGAQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K + S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWIRVTSTGKPGHASRFIEDTAAEKLHKVVNSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-AS 321
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ + W A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEKQL-QSWCQEAG 298
Query: 322 RNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTD 381
+TFE Q KF P +T TD ++PWW A ++ N L +PEIFPA+TD
Sbjct: 299 EGVTFEFAQ---------KFTEPRMTPTDDTDPWWAAFSGACKEMNLTL-EPEIFPAATD 348
Query: 382 ARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
+RY R G+PA+GFSPM TP+LLHDHNE L++A +L+G+DIY ++ A AS
Sbjct: 349 SRYIRAVGIPALGFSPMNRTPVLLHDHNERLHEAVFLRGVDIYTRLVAALAS 400
|
|
| RGD|2030 Acy1 "aminoacylase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 182/403 (45%), Positives = 249/403 (61%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L SI
Sbjct: 16 FRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSI 75
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A DS+G I+ RG+QDMKCV +QYLEA++RLK G +
Sbjct: 76 LLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYTRGAQDMKCVSIQYLEAVKRLKVEGHRF 135
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++++FVPDEE+GGH G E F H F++L G LDEGLA+ T+ + FY+ER PWW
Sbjct: 136 PRTIHMTFVPDEEVGGHQGMELFVQRHEFHALRAGFALDEGLANPTDAFTVFYSERSPWW 195
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SVN+
Sbjct: 196 VRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSVNLT 254
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFELGQ 330
L+ G N+ P+ A FD RV P D ++ E ++ + W A +TFE Q
Sbjct: 255 KLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEEQL-QSWCQEAGEGVTFEFAQ 307
Query: 331 FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGL 390
KF P +T TD ++PWW A ++ L +PEIFPA+TD+RY R G+
Sbjct: 308 ---------KFTEPRMTPTDDTDPWWAAFSGACKEMTLTL-EPEIFPAATDSRYIRAVGI 357
Query: 391 PAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
PA+GFSPM TP+LLHDHNE L++A +L+G+DIY ++ A AS
Sbjct: 358 PALGFSPMNRTPVLLHDHNERLHEAVFLRGVDIYTRLVAALAS 400
|
|
| UNIPROTKB|F1MR63 ACY1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 185/403 (45%), Positives = 251/403 (62%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F +A L L Q +E A + + +L WPG+NP+L S+
Sbjct: 109 FRQYLRIRTLQPEPDYGAAVAFFEERALQLGLGCQKVEVAPGRVVTVLTWPGTNPKLSSV 168
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A D+ G I+ RG+QDMKCV +QYLEA+RRLKA G
Sbjct: 169 LLNSHTDVVPVFQEYWSHDPFEAFKDADGYIYGRGAQDMKCVSIQYLEAVRRLKAEGHHF 228
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++L+FVPDEEIGGH G E F F +L G LDEGLA+ T+ + FY+ER PWW
Sbjct: 229 PRTIHLTFVPDEEIGGHQGMELFVKRPEFQALRAGFALDEGLANPTDAFTVFYSERSPWW 288
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGHG++ +++A E L K + S+ FR + +++ LK EG V SVN+
Sbjct: 289 VRVTSTGKPGHGSRFIEDTAAEKLHKVVSSILAFREKERQRLQSDPQLK-EGAVTSVNLT 347
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFELGQ 330
L+ G N+ P+ A FD RV P D ++ E ++ ++W A+ +TFE Q
Sbjct: 348 ILEGGV------AYNVVPATMSASFDFRVAPDVDLKAFEGQL-QDWCQAAGEGVTFEFAQ 400
Query: 331 FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGL 390
K+ P +T TD S+PWW A + N L +PEIFPA+TD+RY R G+
Sbjct: 401 ---------KWTEPQVTPTDDSDPWWAAFSGACKDMNLTL-EPEIFPAATDSRYLRAVGV 450
Query: 391 PAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
PA+GFSPM TPILLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 451 PALGFSPMNRTPILLHDHDERLHEAVFLRGVDIYTRLLPALAS 493
|
|
| UNIPROTKB|B4DNW0 ACY1 "cDNA FLJ60317, highly similar to Aminoacylase-1 (EC 3.5.1.14)" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 180/403 (44%), Positives = 246/403 (61%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L SI
Sbjct: 106 FRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSI 165
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A DS+G I+ARG+QDMKCV +QYLEA+RRLK G +
Sbjct: 166 LLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRF 225
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+ + FY+ER PWW
Sbjct: 226 PRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERSPWW 285
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SVN+
Sbjct: 286 VRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSVNLT 344
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFELGQ 330
L+ G N+ P+ A FD RV P D ++ E ++ + W A+ +T E Q
Sbjct: 345 KLEGGV------AYNVIPATMSASFDFRVAPDVDFKAFEEQL-QSWCQAAGEGVTLEFAQ 397
Query: 331 FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGL 390
K+ P +T TD SNPWW + N L +PEI PA+TD RY R G+
Sbjct: 398 ---------KWMHPQVTPTDDSNPWWAAFSRVCKDMNLTL-EPEIMPAATDNRYIRAVGV 447
Query: 391 PAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
PA+GFSPM TP+LLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 448 PALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLLPALAS 490
|
|
| UNIPROTKB|Q03154 ACY1 "Aminoacylase-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 180/403 (44%), Positives = 246/403 (61%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L SI
Sbjct: 16 FRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSI 75
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A DS+G I+ARG+QDMKCV +QYLEA+RRLK G +
Sbjct: 76 LLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRF 135
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+ + FY+ER PWW
Sbjct: 136 PRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERSPWW 195
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SVN+
Sbjct: 196 VRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSVNLT 254
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFELGQ 330
L+ G N+ P+ A FD RV P D ++ E ++ + W A+ +T E Q
Sbjct: 255 KLEGGV------AYNVIPATMSASFDFRVAPDVDFKAFEEQL-QSWCQAAGEGVTLEFAQ 307
Query: 331 FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGL 390
K+ P +T TD SNPWW + N L +PEI PA+TD RY R G+
Sbjct: 308 ---------KWMHPQVTPTDDSNPWWAAFSRVCKDMNLTL-EPEIMPAATDNRYIRAVGV 357
Query: 391 PAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
PA+GFSPM TP+LLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 358 PALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLLPALAS 400
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q99JW2 | ACY1_MOUSE | 3, ., 5, ., 1, ., 1, 4 | 0.4525 | 0.8769 | 0.9607 | yes | no |
| Q6PTT0 | ACY1B_RAT | 3, ., 5, ., 1, ., 1, 4 | 0.4469 | 0.8635 | 0.9460 | yes | no |
| Q55DP8 | ACY1_DICDI | 3, ., 5, ., 1, ., 1, 4 | 0.4477 | 0.8545 | 0.9362 | yes | no |
| Q03154 | ACY1_HUMAN | 3, ., 5, ., 1, ., 1, 4 | 0.4419 | 0.8635 | 0.9460 | yes | no |
| Q5RFB0 | ACY1_PONAB | 3, ., 5, ., 1, ., 1, 4 | 0.4370 | 0.8635 | 0.9460 | yes | no |
| P37111 | ACY1_PIG | 3, ., 5, ., 1, ., 1, 4 | 0.4367 | 0.8657 | 0.9508 | yes | no |
| Q6AYS7 | ACY1A_RAT | 3, ., 5, ., 1, ., 1, 4 | 0.4476 | 0.8769 | 0.9607 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.5.1.14 | 0.914 |
| 3rd Layer | 3.5.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 447 | |||
| cd05646 | 391 | cd05646, M20_AcylaseI_like, M20 Aminoacylase-I lik | 0.0 | |
| TIGR01880 | 400 | TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid am | 0.0 | |
| cd05675 | 426 | cd05675, M20_yscS_like, M20 Peptidase, carboxypept | 2e-53 | |
| cd08659 | 365 | cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylo | 6e-52 | |
| pfam01546 | 310 | pfam01546, Peptidase_M20, Peptidase family M20/M25 | 3e-45 | |
| COG0624 | 409 | COG0624, ArgE, Acetylornithine deacetylase/Succiny | 2e-42 | |
| cd05674 | 441 | cd05674, M20_yscS, M20 Peptidase, carboxypeptidase | 2e-40 | |
| PRK08262 | 486 | PRK08262, PRK08262, hypothetical protein; Provisio | 2e-34 | |
| PRK07906 | 426 | PRK07906, PRK07906, hypothetical protein; Provisio | 3e-33 | |
| PRK08651 | 394 | PRK08651, PRK08651, succinyl-diaminopimelate desuc | 1e-31 | |
| TIGR01910 | 375 | TIGR01910, DapE-ArgE, acetylornithine deacetylase | 1e-29 | |
| cd03895 | 399 | cd03895, M20_ArgE_DapE_like2, M20 Peptidases with | 7e-24 | |
| cd08011 | 390 | cd08011, M20_ArgE_DapE_like6, M20 Peptidases with | 2e-23 | |
| cd03873 | 237 | cd03873, Zinc_peptidase_like, Zinc peptidases M18, | 4e-21 | |
| PRK09133 | 472 | PRK09133, PRK09133, hypothetical protein; Provisio | 2e-17 | |
| PRK08588 | 377 | PRK08588, PRK08588, succinyl-diaminopimelate desuc | 1e-14 | |
| cd05650 | 393 | cd05650, M20_ArgE_DapE_like1, M20 Peptidases with | 4e-13 | |
| PRK06837 | 427 | PRK06837, PRK06837, acetylornithine deacetylase; P | 9e-13 | |
| TIGR01246 | 370 | TIGR01246, dapE_proteo, succinyl-diaminopimelate d | 1e-11 | |
| PRK06915 | 422 | PRK06915, PRK06915, acetylornithine deacetylase; V | 2e-11 | |
| cd03894 | 372 | cd03894, M20_ArgE, M20 Peptidase acetylornithine d | 1e-10 | |
| cd03873 | 237 | cd03873, Zinc_peptidase_like, Zinc peptidases M18, | 4e-10 | |
| cd05649 | 376 | cd05649, M20_ArgE_DapE_like4, M20 Peptidases with | 6e-10 | |
| cd05651 | 342 | cd05651, M20_ArgE_DapE_like5, M20 Peptidases with | 2e-09 | |
| cd05652 | 335 | cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases | 4e-09 | |
| TIGR01892 | 364 | TIGR01892, AcOrn-deacetyl, acetylornithine deacety | 5e-09 | |
| cd05653 | 341 | cd05653, M20_ArgE_LysK, M20 Peptidase acetylornith | 8e-09 | |
| cd03891 | 366 | cd03891, M20_DapE_proteobac, M20 Peptidase proteob | 8e-09 | |
| PRK13983 | 400 | PRK13983, PRK13983, diaminopimelate aminotransfera | 8e-09 | |
| cd05680 | 437 | cd05680, M20_dipept_like_3, Uncharacterized M20 Di | 1e-08 | |
| cd02697 | 395 | cd02697, M20_like, M20 Zn-peptidases include exope | 1e-08 | |
| TIGR01887 | 447 | TIGR01887, dipeptidaselike, dipeptidase, putative | 4e-08 | |
| PRK13013 | 427 | PRK13013, PRK13013, succinyl-diaminopimelate desuc | 5e-08 | |
| PRK13009 | 375 | PRK13009, PRK13009, succinyl-diaminopimelate desuc | 6e-08 | |
| cd03896 | 359 | cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspar | 1e-07 | |
| cd08013 | 377 | cd08013, M20_ArgE_DapE_like3, M20 Peptidases with | 2e-07 | |
| cd08012 | 423 | cd08012, M20_ArgE-related, M20 Peptidases with sim | 3e-07 | |
| PRK07522 | 385 | PRK07522, PRK07522, acetylornithine deacetylase; P | 1e-06 | |
| PRK07205 | 444 | PRK07205, PRK07205, hypothetical protein; Provisio | 2e-06 | |
| PRK08554 | 438 | PRK08554, PRK08554, peptidase; Reviewed | 3e-06 | |
| PRK06446 | 436 | PRK06446, PRK06446, hypothetical protein; Provisio | 5e-06 | |
| cd03891 | 366 | cd03891, M20_DapE_proteobac, M20 Peptidase proteob | 8e-06 | |
| PRK08596 | 421 | PRK08596, PRK08596, acetylornithine deacetylase; V | 9e-06 | |
| cd05676 | 466 | cd05676, M20_dipept_like_CNDP, M20 cytosolic nonsp | 1e-05 | |
| cd03888 | 453 | cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptida | 3e-05 | |
| PRK09104 | 464 | PRK09104, PRK09104, hypothetical protein; Validate | 3e-05 | |
| cd05678 | 466 | cd05678, M20_dipept_like_1, Uncharacterized M20 Di | 4e-05 | |
| PRK13009 | 375 | PRK13009, PRK13009, succinyl-diaminopimelate desuc | 5e-05 | |
| cd03888 | 453 | cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptida | 5e-05 | |
| PRK13004 | 399 | PRK13004, PRK13004, peptidase; Reviewed | 7e-05 | |
| cd03885 | 363 | cd03885, M20_CPDG2, M20 Peptidase Glutamate carbox | 9e-05 | |
| PRK07473 | 376 | PRK07473, PRK07473, carboxypeptidase; Provisional | 9e-05 | |
| PRK05111 | 383 | PRK05111, PRK05111, acetylornithine deacetylase; P | 9e-05 | |
| PRK08201 | 456 | PRK08201, PRK08201, hypothetical protein; Provisio | 1e-04 | |
| cd03893 | 428 | cd03893, M20_Dipept_like, M20 Dipeptidases | 2e-04 | |
| TIGR01886 | 466 | TIGR01886, dipeptidase, dipeptidase PepV | 5e-04 | |
| PRK07318 | 466 | PRK07318, PRK07318, dipeptidase PepV; Reviewed | 7e-04 | |
| cd05681 | 430 | cd05681, M20_dipept_like_4, Uncharacterized M20 Di | 0.001 | |
| cd03885 | 363 | cd03885, M20_CPDG2, M20 Peptidase Glutamate carbox | 0.002 | |
| TIGR01902 | 336 | TIGR01902, dapE-lys-deAc, N-acetyl-ornithine/N-ace | 0.002 |
| >gnl|CDD|193524 cd05646, M20_AcylaseI_like, M20 Aminoacylase-I like subfamily | Back alignment and domain information |
|---|
Score = 646 bits (1669), Expect = 0.0
Identities = 234/407 (57%), Positives = 281/407 (69%), Gaps = 17/407 (4%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
+D + RFR YL+I T PNPDY A +F+ QA+ L L + +E KP+++L W GS
Sbjct: 1 EDEAVTRFREYLRIRTVHPNPDYDAAVEFLKRQAKELGLPVKVIEVVPGKPIVVLTWEGS 60
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P+LPSILLNSHTDVVP KW+H PF AH D GNI+ARG+QDMKCVG+QYLEAIRRL
Sbjct: 61 DPELPSILLNSHTDVVPVFEEKWTHDPFSAHKDEDGNIYARGAQDMKCVGIQYLEAIRRL 120
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
KASGF+P R+++LSFVPDEEIGGHDG EKF + F LNVG LDEGLAS TE+YR FY
Sbjct: 121 KASGFKPKRTIHLSFVPDEEIGGHDGMEKFVKTEEFKKLNVGFALDEGLASPTEEYRVFY 180
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKA-GLKAEGEV 265
ER PWW+VI A G PGHG+KL DN+A E L K IE FR QF +K+ G G+V
Sbjct: 181 GERSPWWVVITASGTPGHGSKLLDNTAGEKLMKVIEKFMEFREEQFQRLKSNGKLTIGDV 240
Query: 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMT 325
SVN+ LK G MN+ PSEAEAGFDIR+PPT D E E+RI E A A R +T
Sbjct: 241 TSVNLTMLKG------GVQMNVVPSEAEAGFDIRIPPTVDLEEFEKRIKEWCAEAGRGVT 294
Query: 326 FELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYF 385
+E Q T D SNPWW+ ++AV+K GK KPEIFPA+TD+RY
Sbjct: 295 YEFEQKGPEVD---------PTPLDDSNPWWDAFKKAVKKM-GKKLKPEIFPAATDSRYI 344
Query: 386 RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432
R G+PA+GFSPM NTPILLHDHNEFLN+ +L+GI+IYE II A A
Sbjct: 345 RALGIPALGFSPMNNTPILLHDHNEFLNEDVFLRGIEIYEKIIPALA 391
|
Peptidase M20 family, Aminoacylase-I like (AcyI-like; Acylase I; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. Acylase I is involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate) and is considered as a potential target of antimicrobial agents. Porcine AcyI is also shown to deacetylate certain quorum-sensing N-acylhomoserine lactones, while the rat enzyme has been implicated in degradation of chemotactic peptides of commensal bacteria. Prokaryotic arginine synthesis usually involves the transfer of an acetyl group to glutamate by ornithine acetyltransferase in order to form ornithine. However, Escherichia coli acetylornithine deacetylase (acetylornithinase, ArgE) (EC 3.5.1.16) catalyzes the deacylation of N2-acetyl-L-ornithine to yield ornithine and acetate. Phylogenetic evidence suggests that the clustering of the arg genes in one continuous sequence pattern arose in an ancestor common to Enterobacteriaceae and Vibrionaceae, where ornithine acetyltransferase was lost and replaced by a deacylase. Length = 391 |
| >gnl|CDD|233615 TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid amidohydrolase | Back alignment and domain information |
|---|
Score = 606 bits (1564), Expect = 0.0
Identities = 231/414 (55%), Positives = 293/414 (70%), Gaps = 17/414 (4%)
Query: 21 SSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLIL 80
SS +D + RFR YL+I+T QPNPDY F++ QA+ L L +T+EF KP+++
Sbjct: 2 SSSKWEEDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVV 61
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
L WPGSNP+LPSILLNSHTDVVP W+H PF A D GNI+ARG+QDMKCVG+QYL
Sbjct: 62 LTWPGSNPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYL 121
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE 200
EA+R LKASGF+ R++++SFVPDEEIGGHDG EKFA + F +LN+G LDEGLAS +
Sbjct: 122 EAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKALNLGFALDEGLASPDD 181
Query: 201 DYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLK 260
YR FYAER PWW+V+ A G PGHG+KL +N+AME L KS+ES+RRFR SQF L+++
Sbjct: 182 VYRVFYAERVPWWVVVTAPGNPGHGSKLMENTAMEKLEKSVESIRRFRESQFQLLQSNPD 241
Query: 261 -AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP 319
A G+V SVN+ LK G S N+ PSEAEAGFDIR+ P+ D E +E R+ E A
Sbjct: 242 LAIGDVTSVNLTKLKGGVQS------NVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCAD 295
Query: 320 ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAS 379
A +T+E Q G+P++T D SNPWW ++AV K G KPEI P S
Sbjct: 296 AGEGVTYEFSQ---------HSGKPLVTPHDDSNPWWVAFKDAV-KEMGCTFKPEILPGS 345
Query: 380 TDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
TD+RY R G+PA+GFSPM NTP+LLHDHNEFLN+A +L+GI+IY+++I A AS
Sbjct: 346 TDSRYIRAAGVPALGFSPMNNTPVLLHDHNEFLNEAVFLRGIEIYQTLISALAS 399
|
This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids. Length = 400 |
| >gnl|CDD|193550 cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like | Back alignment and domain information |
|---|
Score = 183 bits (468), Expect = 2e-53
Identities = 109/424 (25%), Positives = 181/424 (42%), Gaps = 67/424 (15%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
+ ++IDT+ P + T A++++ A+ + ++ + LE A + ++ + PG++P P +
Sbjct: 4 LQELIRIDTTNPPGNETRAAEYLAARLKEAGIDIEILESAPGRANLVARLPGTDPSAPPL 63
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LL H DVVP++P WS PF + G ++ RG+ DMK + L A+RRLK GF+P
Sbjct: 64 LLLGHLDVVPADPEDWSVDPFSGEIKD-GYVYGRGAVDMKGMVAMMLAALRRLKREGFKP 122
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVLDE-GLASTTED-----YRAF 205
R + L+F DEE GG GA+ ++H +F+ ++E G S + Y
Sbjct: 123 DRDLILAFTADEEAGGEYGAKWLVENHPDLFD--GAEFAINEGGGGSLDDGGKPRLYPIQ 180
Query: 206 YAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQF-----DLVKAGLK 260
AE+ WL + A G GHG+ ++A+ L E++ R A +F + +A +
Sbjct: 181 TAEKGYAWLRLTATGPGGHGSMPRPDNAIYRL---AEALARLGAYRFPVRLTETTRAYFE 237
Query: 261 A-----EGEVVSVNMAFLKAGTP---------------------SPN----GFVMNLQPS 290
G + + P G N+ P
Sbjct: 238 QLAEITGGPLDAAMKRLAADPLDEAAAALGSADPLLHATLRTTCVPTMLEAGHKENVIPQ 297
Query: 291 EAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATD 350
EA A D R+ P D E + + + + EL RP A+
Sbjct: 298 EATATVDCRILPGVDEEEVLATLKK--LLGDPAVEVEL------------VHRPPAPASP 343
Query: 351 SSNPWWNLLEEAVRKA-NGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTP---ILLH 406
P ++ +E A+ G P + TD+++FR G+P GFSP+ P H
Sbjct: 344 LDTPLYDAIEAALAAEDPGAPVVPYMSSGGTDSKFFRALGIPTYGFSPLFLPPDDDSGAH 403
Query: 407 DHNE 410
+E
Sbjct: 404 GLDE 407
|
Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group contains proteins that have been uncharacterized to date with similarity to vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis. Length = 426 |
| >gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 6e-52
Identities = 95/402 (23%), Positives = 154/402 (38%), Gaps = 54/402 (13%)
Query: 38 LQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97
+ I + P + ++ E L + + E A +P ++ G P++LLN
Sbjct: 7 VAIPSVNPPGGEAEVADYLAELLEDLGIPVEVDEVAPGRPNLVATIGGGRG--PTLLLNG 64
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK--CVGMQYLEAIRRLKASGFQPVR 155
H D VP W++ PF ++ G ++ RG+ DMK M L A+ L +G
Sbjct: 65 HLDTVPVGDEDWTYDPFEGEIED-GRLYGRGACDMKGGLAAM--LAALAELAEAGVPLPG 121
Query: 156 SVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE--DYRAFYAERCPWW 213
V L+ DEE G GA + + IV E A +
Sbjct: 122 RVTLAATVDEETG-SLGARALLERGYALRPDAAIV--------GEPTSLDICIAHKGSLR 172
Query: 214 LVIKARGAPGHGA--KLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV---VSV 268
L + A G HG+ +L N A+ L K I ++ + L AE + ++
Sbjct: 173 LRVTATGKAAHGSRPELGVN-AIYALAKVIGALEELPFA--------LPAEHPLLGPPTL 223
Query: 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEL 328
N+ +K G +N+ P EA DIR+ P D + + + L
Sbjct: 224 NVGVIKGGE------QVNVVPDEATLELDIRLVPGEDPDEVLAELEAL-----------L 266
Query: 329 GQFKQRASL-HDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE 387
Q A + D P TD +P L A+ G+ K P +TDA Y +
Sbjct: 267 AQVPPPADVEVDLSVPPPPVVTDPDSPLVQALAAAIADVTGRPPKVRGVPGATDASYLAK 326
Query: 388 RGLPAIGFSPMANTPI-LLHDHNEFLNQAEYLKGIDIYESII 428
G+P + F P + H +E+++ E L+ +IY +
Sbjct: 327 AGIPTVVFGP---GDLAQAHQPDEYVSIDELLRAAEIYARLA 365
|
Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) like family of enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this family are mostly bacterial and have been inferred by homology as being related to both, ArgE and DapE. This family also includes N-acetyl-L-citrulline deacetylase (ACDase; acetylcitrulline deacetylase), a unique, novel enzyme found in Xanthomonas campestris, a plant pathogen, in which N-acetyl-L-ornithine is the substrate for transcarbamoylation reaction, and the product is N-acetyl-L-citrulline. Thus, in the arginine biosynthesis pathway, ACDase subsequently catalyzes the hydrolysis of N-acetyl-L-citrulline to acetate and L-citrulline. Length = 365 |
| >gnl|CDD|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40 | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 3e-45
Identities = 81/343 (23%), Positives = 128/343 (37%), Gaps = 39/343 (11%)
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LL H DVVP + W+H PF ++ G ++ RG DMK + LEA+R LK +G +
Sbjct: 1 LLRGHMDVVPIGETGWTHPPFSWTIE-DGKMYGRGHDDMKGGLLAALEALRALK-AGGKL 58
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL--NVGIVLDEGLASTTEDYRAFYAERCP 211
++ L F PDEE GG +GA + L + G+V + R
Sbjct: 59 KGTIKLLFQPDEEGGGFEGARALIEDGAIFGLHPDQGVVGEPTGLPGGTGIRG-----SL 113
Query: 212 WWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMA 271
+ GA HG+ + +A+ ++ + + S+ VV +
Sbjct: 114 DLFLTVIGGAGHHGSPPHGGNAIALAAAALILLLQLIVSRGVDPLDPA-----VVGI--- 165
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESL--ERRIVEEWAPASRNMTFELG 329
GT G N EA R + +L E A+ + E
Sbjct: 166 ----GTVGGGGGSNNNVIPEAAFLRGRRRTLDEELRALVEEEEEAIAAGAAAAGVVEEEE 221
Query: 330 QFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERG 389
+ RP T + LEEA ++ +PE DA +F E G
Sbjct: 222 DY-----------RPPYPVTVNDPALVAALEEAAKELGLGP-EPEPSGGGEDAAFFAEVG 269
Query: 390 L--PAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKA 430
L P +GF P H NE+++ + KG + +++
Sbjct: 270 LGIPMLGFGPGDGALA--HSPNEYVDLDDLEKGAKVLARLLEE 310
|
This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases. Length = 310 |
| >gnl|CDD|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 2e-42
Identities = 97/413 (23%), Positives = 157/413 (38%), Gaps = 22/413 (5%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPL-ILLKWPG 85
D I+E + ++I + + A++ + E L E + E L+ G
Sbjct: 12 LDDILELLKELVRIPSVSAGEE-AEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLG 70
Query: 86 SNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVG--MQYLEA 142
P++LL H DVVP+ W+ PF + G ++ RG+ DMK G L A
Sbjct: 71 GGDGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIK-DGKLYGRGAADMK--GGLAAALYA 127
Query: 143 IRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN--VGIVLDEGLASTTE 200
+ LKA+G + V L F DEE GG G + + IV + L S
Sbjct: 128 LSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEPTLESEGG 187
Query: 201 DYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLK 260
D + WL + +G GH + + + +IE++ DL G
Sbjct: 188 D-IIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGFD 246
Query: 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA 320
++V + G G +N+ P EAEA DIR+ P D + + +
Sbjct: 247 GP-LGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEA----- 300
Query: 321 SRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST 380
+ + + G P L +P L EA + G + +
Sbjct: 301 --ELRAIAPKEGVEYEIEPGLGEPPLP-VPGDSPLVAALAEAAEELLGLPPEVSTGGGTH 357
Query: 381 DARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
DAR+F G+PA+ F P L H NE++ + +KG + ++ A
Sbjct: 358 DARFFARLGIPAVIFGPGDIG--LAHQPNEYVELEDLVKGAKVLARLLYELAE 408
|
Length = 409 |
| >gnl|CDD|193549 cd05674, M20_yscS, M20 Peptidase, carboxypeptidase yscS | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-40
Identities = 113/472 (23%), Positives = 181/472 (38%), Gaps = 104/472 (22%)
Query: 31 IERFRAYLQIDT------SQPNPDYTNASKFILAQAEALSLESQTLEFAK-NKPLILLKW 83
ER ++I T + D+ KF + L + L+ N +L W
Sbjct: 1 AERLSGAVRIPTVSYDDMVDEDEDWDPFYKFHDYLEKTYPLVHKALKLEVVNTYGLLYTW 60
Query: 84 PGSNPQLPSILLNSHTDVVPSEP---SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
GS+P L ILL +H DVVP P +W+H PF H+D G I+ RG+ D K + L
Sbjct: 61 EGSDPSLKPILLMAHQDVVPVNPGTEDEWTHPPFSGHIDD-GYIWGRGALDDKNSLIAIL 119
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE 200
EA+ L A GFQP R++YL+F DEE+GG GA A+ +++ VLDEG A
Sbjct: 120 EAVEALLAEGFQPERTIYLAFGHDEEVGGTRGAAAIAELLERYGVDLAFVLDEGGAILEG 179
Query: 201 DYRAF-------------YAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRF 247
+ Y + + + RG GH + ++A+ L ++I R
Sbjct: 180 LFPGVGTPVALIGVAEKGYLD-----VRLTVRGPGGHSSMPPPHTAIGILAEAIT---RL 231
Query: 248 RASQFD-----------------------LVKAGLKAEGEVVSVNMAFLKAGTPSPNGFV 284
+ F L+ A L ++ + + +G+P+ N V
Sbjct: 232 EDNPFPPRLTPPNPAMLQCLAPHSPFAPRLLLANLWLFEPLLKLRLL---SGSPATNALV 288
Query: 285 -------M-------NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQ 330
+ N+ P EA A + R+ P E + + + L
Sbjct: 289 RTTTAVTIINGGVKANVLPEEASATVNFRILPGDTVEEVLEHVKRAIDDIAVKYELLLSL 348
Query: 331 FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGK--LGKPEIFPASTDARYF--- 385
+ + + + P W LL +R+ + P + +TD R++
Sbjct: 349 SSEPSP-----------VSPTDGPAWELLAGTIRQVYFPDVVVAPYLMTGNTDTRHYWNL 397
Query: 386 -----RERGLPAIGFSPMANTPILL---HDHNEFLNQAEYLKGIDIYESIIK 429
R FSP+ T L H NE ++ YL+ I Y +I+
Sbjct: 398 TKNIYR--------FSPIRLTGEDLARIHGVNERISVDNYLRAIRFYYELIQ 441
|
Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group mostly contains proteins that have been uncharacterized to date, but also includes vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis. Length = 441 |
| >gnl|CDD|236208 PRK08262, PRK08262, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-34
Identities = 119/468 (25%), Positives = 186/468 (39%), Gaps = 86/468 (18%)
Query: 27 DDSIIERFRAYLQIDT-SQPNPDYTNASKFI-----LAQA-----EALSLE---SQTLEF 72
+D+ ER ++ T S + +A+ F L ++ AL E +L
Sbjct: 43 EDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGGHSL-- 100
Query: 73 AKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP---SKWSHHPFGAHLDSQGNIFARGS 129
L W GS+P L I+L +H DVVP P W+H PF + G ++ RG+
Sbjct: 101 -------LYTWKGSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIA-DGYVWGRGA 152
Query: 130 QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189
D K + LEA L A GFQP R++YL+F DEE+GG GA A+ + V +
Sbjct: 153 LDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGL-GARAIAE--LLKERGVRL 209
Query: 190 --VLDEGLASTTEDYRAF--------YAERCPWWLVIKARGAPGHGAKLYDNSAMENLFK 239
VLDEG A T AE+ L + AR GH + +A+ L +
Sbjct: 210 AFVLDEGGAITEGVLPGVKKPVALIGVAEKGYATLELTARATGGHSSMPPRQTAIGRLAR 269
Query: 240 SIESVR------RFR---ASQFDLVKAGLKAEGEVVSVNMAFLK-------AGTPSPNGF 283
++ + R R A FD + + VV N+ + A +P
Sbjct: 270 ALTRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAM 329
Query: 284 V-------M-------NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELG 329
+ M N+ P A A + R+ P ES+ + A A + E+
Sbjct: 330 LRTTTAPTMLKGSPKDNVLPQRATATVNFRILPGDSVESVLAHVRR--AVADDRVEIEV- 386
Query: 330 QFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLG-KPEIFPASTDARYFRER 388
L +++TDS + LL +R+ + P + +TD+R++
Sbjct: 387 -------LGGNSEPSPVSSTDS--AAYKLLAATIREVFPDVVVAPYLVVGATDSRHYSGI 437
Query: 389 GLPAIGFSPMANTP---ILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
FSP+ +P H NE ++ A Y + I Y +I+ A
Sbjct: 438 SDNVYRFSPLRLSPEDLARFHGTNERISVANYARMIRFYYRLIENAAG 485
|
Length = 486 |
| >gnl|CDD|181163 PRK07906, PRK07906, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-33
Identities = 105/411 (25%), Positives = 169/411 (41%), Gaps = 75/411 (18%)
Query: 35 RAYLQIDTS----QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
++IDT+ A++++ + + LE LE A + ++ + PG++P
Sbjct: 6 SELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSR 65
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK-CVGMQYLEAIRRLKAS 149
P++L++ H DVVP+E + WS HPF + G ++ RG+ DMK M L +R L +
Sbjct: 66 PALLVHGHLDVVPAEAADWSVHPFSGEI-RDGYVWGRGAVDMKDMDAM-MLAVVRHLART 123
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVLDEGLASTTEDYRAFY- 206
G +P R + +FV DEE GG GA D+H +F + I G + T Y
Sbjct: 124 GRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEGVTEAISEVGGFSLTVPGRDRLYL 183
Query: 207 ---AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQF-----DLVKAG 258
AE+ W+ + ARG GHG+ + D++A+ L E+V R ++ V+A
Sbjct: 184 IETAEKGLAWMRLTARGRAGHGSMVNDDNAVTRL---AEAVARIGRHRWPLVLTPTVRAF 240
Query: 259 LKAEGEVV-----------------------------SVNMAFLKAGTPSPNGFVMNLQP 289
L E+ + N LKA G+ +N+ P
Sbjct: 241 LDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKA------GYKVNVIP 294
Query: 290 SEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTAT 349
AEA D R P + E + E LG +R +H T
Sbjct: 295 GTAEAVVDGRFLPGREEE-FLATVDE-----------LLGPDVEREWVHRD----PALET 338
Query: 350 DSSNPWWNLLEEAVRKANGKLGK--PEIFPASTDARYFRERGLPAIGFSPM 398
P + + A+ A + P + TDA+ F G+ GF+P+
Sbjct: 339 PFDGPLVDAMNAALL-AEDPGARVVPYMLSGGTDAKAFSRLGIRCYGFAPL 388
|
Length = 426 |
| >gnl|CDD|236323 PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 90/428 (21%), Positives = 156/428 (36%), Gaps = 75/428 (17%)
Query: 30 IIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAKNKP---------LI 79
I+E + ++I T P +Y ++F+ E L ++ +E LI
Sbjct: 8 IVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLI 67
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK---CVG 136
+ G+ P + N H DVVP + PF + G ++ RG+ DMK
Sbjct: 68 ARRGSGN----PHLHFNGHYDVVPPGEGWSVNVPFEPKVKD-GKVYGRGASDMKGGIAAL 122
Query: 137 MQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLA 196
+ E + ++ L+ VPDEE GG G + +++ E
Sbjct: 123 LAAFERLDPAGDG------NIELAIVPDEETGGT-GTGYLVE--EGKVTPDYVIVGEP-- 171
Query: 197 STTEDYRAFYAERCPWWLVIKARGAPGHGA--KLYDNS--AMENLFKSIESVRRFRASQF 252
+ D R W V+K G H + L N+ A + + ++S S++
Sbjct: 172 -SGLDN-ICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSKY 229
Query: 253 DLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERR 312
+ + V++ ++ GT N+ P D R+ P AE +
Sbjct: 230 EYDDE--RGAKPTVTLGGPTVEGGT------KTNIVPGYCAFSIDRRLIPEETAEEVRDE 281
Query: 313 I---VEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWN--------LLEE 361
+ ++E AP L + I T S + L E
Sbjct: 282 LEALLDEVAP----------------ELGIEVEFEI---TPFSEAFVTDPDSELVKALRE 322
Query: 362 AVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGI 421
A+R+ G K I TDAR+F +G+P + + P L H +E++ + K
Sbjct: 323 AIREVLGVEPKKTISLGGTDARFFGAKGIPTVVYGPGE--LELAHAPDEYVEVKDVEKAA 380
Query: 422 DIYESIIK 429
+YE ++K
Sbjct: 381 KVYEEVLK 388
|
Length = 394 |
| >gnl|CDD|233632 TIGR01910, DapE-ArgE, acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 75/407 (18%), Positives = 153/407 (37%), Gaps = 46/407 (11%)
Query: 31 IERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQ----TLEFAKNKPLILLKWPG 85
+E + + I + + P + + +I + T + K +++K PG
Sbjct: 1 VELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPG 60
Query: 86 SNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + S++ N H DVVP+ + W PF ++ G ++ RG+ DMK + L A++
Sbjct: 61 NGNE-KSLIFNGHYDVVPAGDLELWKTDPFKP-VEKDGKLYGRGATDMKGGLVALLYALK 118
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
++ +G +P ++ L V DEE G G F + ++ +
Sbjct: 119 AIREAGIKPNGNIILQSVVDEESGE-AGTLYLLQRGYFKDADGVLI-----PEPSGGDNI 172
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263
+ W ++ +G H + +A+ L K I + + E
Sbjct: 173 VIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELN--------------ELEE 218
Query: 264 EVVSVNMAFLKAGTPSPNGFVM------NLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317
+ + N G + N V+ N P E D+R+ P + + + ++I+E+
Sbjct: 219 HIYARNSYGFIPGPITFNPGVIKGGDWVNSVPDYCEFSIDVRIIPEENLDEV-KQIIEDV 277
Query: 318 -APASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIF 376
S++ + T + LE ++K G + +
Sbjct: 278 VKALSKSDGW-------LYENEPVVKWSGPNETPPDSRLVKALEAIIKKVRGIEPEVLVS 330
Query: 377 PASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 423
TDAR+ R+ G+P+I + P H NE+++ ++ +
Sbjct: 331 TGGTDARFLRKAGIPSIVYGPGDLE--TAHQVNEYISIKNLVESTKV 375
|
This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 375 |
| >gnl|CDD|193515 cd03895, M20_ArgE_DapE_like2, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 79/354 (22%), Positives = 122/354 (34%), Gaps = 85/354 (24%)
Query: 91 PSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMK--CVGMQYLEAIRRLK 147
S++LN H DVVP+ W+ PF ++ G ++ RG+ DMK L A+ L+
Sbjct: 74 RSLILNGHIDVVPAGDLDLWTRDPFSPVIED-GWLYGRGAGDMKGGLAAA--LFAVEALR 130
Query: 148 ASGFQPVRSVYLSFVPDEEIGGH------------DGA---EKFADSHVFNSLNVGIVLD 192
A+G + V V +EE GG+ D A E VG++
Sbjct: 131 AAGIRLAGDVAFQSVVEEECGGNGALATLLRGYRADAAIIPEPTGLK--IVPAQVGVL-- 186
Query: 193 EGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQ 251
W ++ G P H A Y+ +A+E + I ++R A
Sbjct: 187 --------------------WFRLRVPGRPAHAATRYEGVNAIEKAYALIAALRELEAEW 226
Query: 252 FDLVKAGLKAEGEV-VSVNMAFLKAGT-PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESL 309
V L A+ +++N+ ++ G PS V P E I V P
Sbjct: 227 NARVTHPLFADHPHPINLNVGKIEGGDWPSS---V----PDRCELEGRIGVYPGETPAEA 279
Query: 310 ERRIVEEWAPASRNMTFELGQFKQRASLHDKFGR---PILT---------ATDSSNPWWN 357
+ I E+ A+ D + P + D +P
Sbjct: 280 KAEI-EDAI--------------AEAAAADPWLAEHPPEVEWFGFQAEGGELDLDHPLVQ 324
Query: 358 LLEEAVRKANGKLGKPEIFPASTDARYFRERG-LPAIGFSPMANTPILLHDHNE 410
L A G + E A TDAR F G +P + + P H +E
Sbjct: 325 ALAAAHEDVTGTPPEIEAATAGTDARLFVLYGDIPTLVYGPGDTR--NAHGPDE 376
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 399 |
| >gnl|CDD|193559 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 89/414 (21%), Positives = 154/414 (37%), Gaps = 62/414 (14%)
Query: 39 QIDT-SQPNPDYTNASKFILAQAEALSLESQ-----------TLEFAKNKP-LILLKWPG 85
+I T + P +Y ++++ + E L E + P I++ G
Sbjct: 9 RIPTVNPPGENYEECAEYLKERLEELGFEVEIIEVPDEYLDKYYPRHPGNPRFIVVARLG 68
Query: 86 SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
P P + N H DVVP WS PF + G I+ RG+ DMK + A+
Sbjct: 69 EGP--PRLHFNGHYDVVPPGDG-WSVDPFKPVV-KDGRIYGRGASDMKGGIAAAIAALEA 124
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD------SHVFNSLNVGIVLDEGLASTT 199
L +G P V +FVPDEE GG G + +V ++ E +
Sbjct: 125 LAEAGVPPNGPVEAAFVPDEESGGETGTGYLVEEGGIRPDYV--------IIAEP---SG 173
Query: 200 EDYRAFYAERCPWWLVIKARGAPGHG--AKLYDN-----SAM-ENLFKSIESVRRFRASQ 251
D + R W ++ +G HG L N S + L ++++ R S+
Sbjct: 174 LD-NIWIGHRGIVWGEVRVKGKQAHGSTPWLGINAFEKASVIALELQEALKPRLSSRKSK 232
Query: 252 FDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLER 311
++ +V + GT N+ P D R+ P + E + +
Sbjct: 233 YE----YEDERTANPTVTLGGEAEGTGK-----TNIVPGYFRFSIDRRLIPEENLEEVRK 283
Query: 312 RIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLG 371
IV+ A + + K + T + L EA+R+ G
Sbjct: 284 EIVDLLERAEEGIKHRF-EVKSLMIVS-------AEFTPPDSSVVEALREAIREVLGVEP 335
Query: 372 KPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 425
+ I P D RY++ +G+ A+ + P L H +E+++ + ++ I +Y
Sbjct: 336 RKTICPGGLDLRYYKRKGIDAVAYGP--GELDLAHAPDEYVDIEDLVRVIKVYA 387
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 390 |
| >gnl|CDD|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42 | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 4e-21
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPS 92
+ ++I + + I + E L ++ +E + +++++ G P
Sbjct: 1 LLKELIRIPSVTGEEA--EFADRIARELEELGID---VEVDAHIGNLIVEYGGGEK--PP 53
Query: 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQ 152
+LL +H DVVP+ + W PF G ++ RG+ D K LEA+R LK +GF+
Sbjct: 54 VLLMAHIDVVPAGDTWWWEFPFAVDTLKDGRLYGRGAADDKGSVAALLEALRDLKENGFK 113
Query: 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL-NVGIVLDEG 194
P ++ +F DEE GG GA + VLD G
Sbjct: 114 PKGTIIFAFTADEEAGGSAGAGLALWLLEEGLKVDYLFVLDGG 156
|
Zinc peptidases play vital roles in metabolic and signaling pathways throughout all kingdoms of life. This family corresponds to several clans in the MEROPS database, including the MH clan, which contains 4 families (M18, M20, M28, M42). The peptidase M20 family includes carboxypeptidases such as the glutamate carboxypeptidase from Pseudomonas, the thermostable carboxypeptidase Ss1 of broad specificity from archaea and yeast Gly-X carboxypeptidase. The dipeptidases include bacterial dipeptidase, peptidase V (PepV), a eukaryotic, non-specific dipeptidase, and two Xaa-His dipeptidases (carnosinases). There is also the bacterial aminopeptidase, peptidase T (PepT) that acts only on tripeptide substrates and has therefore been termed a tripeptidase. Peptidase family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. However, several enzymes in this family utilize other first row transition metal ions such as cobalt and manganese. Each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Glutamate carbxypeptidase II and plasma glutamate carboxypeptidase hydrolyze dipeptides. Peptidase families M18 and M42 contain metalloaminopeptidases. M18 is widely distributed in bacteria and eukaryotes. However, only yeast aminopeptidase I and mammalian aspartyl aminopeptidase have been characterized in detail. Some of M42 (also known as glutamyl aminopeptidase) enzymes exhibit aminopeptidase specificity while others also have acylaminoacylpeptidase activity (i.e. hydrolysis of acylated N-terminal residues). Length = 237 |
| >gnl|CDD|236388 PRK09133, PRK09133, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 87/404 (21%), Positives = 153/404 (37%), Gaps = 75/404 (18%)
Query: 79 ILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQ 138
++ + G++P+ P ILL +H DVV ++ W+ PF ++ G + RG+ D K
Sbjct: 91 LVARLRGTDPKKP-ILLLAHMDVVEAKREDWTRDPF-KLVEENGYFYGRGTSDDKADAAI 148
Query: 139 YLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAST 198
++ + RLK GF+P R + L+ DEE +G A++H ++ L+EG T
Sbjct: 149 WVATLIRLKREGFKPKRDIILALTGDEEGTPMNGVAWLAENHRDL-IDAEFALNEGGGGT 207
Query: 199 TED------YRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVR--RFRAS 250
++ E+ ++ GH ++ ++A+ L ++ + RF
Sbjct: 208 LDEDGKPVLLTVQAGEKTYADFRLEVTNPGGHSSRPTKDNAIYRLAAALSRLAAYRFPVM 267
Query: 251 QFDLVKAGLKAEGEVVSVNMA-----FLKAGT-----------PSPNGFV---------- 284
D+ +A K + + +A F PS N +
Sbjct: 268 LNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLE 327
Query: 285 ----MNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDK 340
N P A A + R+ P E++ + + A +
Sbjct: 328 GGHAENALPQRATANVNCRIFPGDTIEAVRATLKQ--VVADPAIK--------------- 370
Query: 341 FGRPILTATDSS----NPWWNLLEEAVRKANGKL--GKPEIFPA----STDARYFRERGL 390
I D S +P + +AV K + G P + P+ +TD RY R G+
Sbjct: 371 ----ITRIGDPSPSPASPLRPDIMKAVEKLTAAMWPGVP-VIPSMSTGATDGRYLRAAGI 425
Query: 391 PAIGFSPMANTPILLHDH--NEFLNQAEYLKGIDIYESIIKAYA 432
P G S + P H NE + A + +G D ++K A
Sbjct: 426 PTYGVSGLFGDPDDTFAHGLNERIPVASFYEGRDFLYELVKDLA 469
|
Length = 472 |
| >gnl|CDD|181490 PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 86/356 (24%), Positives = 143/356 (40%), Gaps = 55/356 (15%)
Query: 91 PSILLNSHTDVV-PSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS 149
P + L+ H DVV + KW++ PF + G ++ RG+ DMK + A+ LK
Sbjct: 60 PVLALSGHMDVVAAGDVDKWTYDPFELT-EKDGKLYGRGATDMKSGLAALVIAMIELKEQ 118
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAER 209
G ++ L EE+G GA++ + + L+ +++ E + YA +
Sbjct: 119 GQLLNGTIRLLATAGEEVGEL-GAKQLTEKGYADDLD-ALIIGE-----PSGHGIVYAHK 171
Query: 210 CPWWLVIKARGAPGHGAKLYDNSAMENL-FKSIESVRRFRASQ---FDLVKAGLKAEGEV 265
+ + G H S+M L +I+ + F Q FD +K G +
Sbjct: 172 GSMDYKVTSTGKAAH-------SSMPELGVNAIDPLLEFYNEQKEYFDSIKKHNPYLGGL 224
Query: 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERR---IVEEW-APAS 321
V G +N P EAE F+IR P D + + I+ E +
Sbjct: 225 THVVTII-NGGEQ------VNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQNGA 277
Query: 322 RNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKP---EIFPA 378
++ ++ + RP+ + DS L++ A A +G+ P
Sbjct: 278 AQLSLDI--------YSNH--RPVASDKDSK-----LVQLAKDVAKSYVGQDIPLSAIPG 322
Query: 379 STDARYFRERG--LPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 431
+TDA F ++ P I F P T H +E++ + YLK IDIY+ II Y
Sbjct: 323 ATDASSFLKKKPDFPVIIFGPGNNLTA---HQVDEYVEKDMYLKFIDIYKEIIIQY 375
|
Length = 377 |
| >gnl|CDD|193527 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 81/357 (22%), Positives = 132/357 (36%), Gaps = 60/357 (16%)
Query: 76 KPLILLKWPGSNPQLPSILLNSHTDVVP-SEPSKWSHHPFGAHLDSQGNIFARGSQD--M 132
+P I+ + PG++ ++ + SH DVVP + S W PF + I+ RG +D
Sbjct: 59 RPNIVARIPGADTS-RTLWIISHMDVVPPGDLSLWKTDPFKPVVKG-DKIYGRGVEDNGQ 116
Query: 133 KCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV--FNSLNVGIV 190
V A + LK G P ++ L+FV DEE G G + H F ++ +V
Sbjct: 117 AIVSSLL--AAKALKDLGITPKYNLGLAFVADEETGSRYGIKYLLKKHPELFKKDDLILV 174
Query: 191 LDEGLA--STTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD-NSAMENLFKSIESVRRF 247
D G S E AE+ WL + +G H + + +A K I ++ R
Sbjct: 175 PDAGNPDGSMIE-----IAEKSILWLKVTVKGKQCHASTPEEGINAHRAASKLILALDRL 229
Query: 248 RASQFDLVKAGLKAEGEVVSVNMAFL---------KAGTPSPNGFVMNLQPSEAEAGFDI 298
+F+ + F K N +N P FD
Sbjct: 230 LHEKFN-------------KRDPLFDPPYSTFEPTKKEANVDN---INTIPGRDVFYFDC 273
Query: 299 RVPPTTDAESLE---RRIVEEWAPASR-NMTFELGQFKQRASLHDKFGRPILTATDSSNP 354
R+ P + + R I +E + E+ Q + T +
Sbjct: 274 RILPEYSLDEVLETVREIAKEVEEKYGVKIEVEVVQREDAPP-----------PTPPDSE 322
Query: 355 WWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEF 411
L+ A+++ G KP T A + R +G+PA+ +S + T H NE+
Sbjct: 323 IVRRLKRAIKEVRGIEPKPGGIGGGTVAAFLRRKGIPAVVWSTLDETA---HQPNEY 376
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial and archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 393 |
| >gnl|CDD|180721 PRK06837, PRK06837, acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-13
Identities = 83/371 (22%), Positives = 136/371 (36%), Gaps = 64/371 (17%)
Query: 85 GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKC--VGMQYLE 141
+ S++L H DVVP P WS PF + G ++ RG+ DMK M +
Sbjct: 92 PAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVI-VDGWMYGRGAADMKAGLAAMLF-- 148
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
A+ L+A+G P V+ V +EE G +GA ++L G D L
Sbjct: 149 ALDALRAAGLAPAARVHFQSVIEEESTG-NGA--------LSTLQRGYRADACLIPEPTG 199
Query: 202 YRAFYAERCPWWLVIKARGAPGH------GAKLYDNSAMENLFKSIESVRRFRASQFDLV 255
+ A+ W ++ RGAP H GA +A++ + I+++R A +++
Sbjct: 200 EKLVRAQVGVIWFRLRVRGAPVHVREAGTGA-----NAIDAAYHLIQALRELEA-EWNAR 253
Query: 256 KAGLKAEGEV---VSVNMAFLKAG-----TPSPNGFVMNLQPSEAEAGFDIRVP--PTTD 305
KA +V ++ N+ +K G P A D R+ P
Sbjct: 254 KASDPHFEDVPHPINFNVGIIKGGDWASSVP-------------AWCDLDCRIAIYPGVT 300
Query: 306 AESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRK 365
A + I A A+R+ F L S L A
Sbjct: 301 AADAQAEIEACLAAAARDDRF-LSNNPPEVVWSGFLAEG-YVLEPGSEA-EAALARAHAA 357
Query: 366 ANGKLGKPEIFPASTDARYFR-ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 424
G + + A TD R++ G+PA+ + P H +E ++ ++
Sbjct: 358 VFGGPLRSFVTTAYTDTRFYGLYYGIPALCYGPSGEGI---HGFDERVD-------LESV 407
Query: 425 ESIIKAYASYV 435
+ K A +V
Sbjct: 408 RKVTKTIALFV 418
|
Length = 427 |
| >gnl|CDD|162269 TIGR01246, dapE_proteo, succinyl-diaminopimelate desuccinylase, proteobacterial clade | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 89/406 (21%), Positives = 146/406 (35%), Gaps = 76/406 (18%)
Query: 47 PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106
P+ I + E L E + + F K L + G P + HTDVVP+ P
Sbjct: 16 PNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGTGE----PVLAFAGHTDVVPAGP 71
Query: 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL--KASGFQPVRSVYLSFVP 163
+WS PF G ++ RG+ DMK ++ A R K + S+ L
Sbjct: 72 EEQWSSPPFEPVERD-GKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKG--SISLLITS 128
Query: 164 DEEIGGHDGAEKFAD--------------SHVFNSLNVGIVLDEG-LASTTEDYRAFYAE 208
DEE DG +K + + +G V+ G S T +
Sbjct: 129 DEEGTAIDGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRGSITGN------- 181
Query: 209 RCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV--- 265
+ +G GH A Y + A + K+ ++ A ++D EG
Sbjct: 182 -------LTIKGIQGHVA--YPHLANNPIHKAAPALAELTAIKWD--------EGNEFFP 224
Query: 266 -VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNM 324
S+ + + AGT N+ P E F++R E L++R+
Sbjct: 225 PTSLQITNIHAGTG-----ANNVIPGELYVQFNLRFSTEVSDEILKQRVEA--------- 270
Query: 325 TFELGQFKQRASLHDKF-GRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDAR 383
L Q L G P LT + EA+ + NG + ++D R
Sbjct: 271 --ILDQHGLDYDLEWSLSGEPFLTND---GKLIDKAREAIEETNGIKPELSTGGGTSDGR 325
Query: 384 YFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIK 429
+ G + F P+ T +H NE ++ + K D+Y+ +++
Sbjct: 326 FIALMGAEVVEFGPVNAT---IHKVNECVSIEDLEKLSDVYQDLLE 368
|
This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum , and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason [Amino acid biosynthesis, Aspartate family]. Length = 370 |
| >gnl|CDD|180745 PRK06915, PRK06915, acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 92 SILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
S++LN H DVVP + ++W HHP+ + G I+ RG+ DMK + L A+ L SG
Sbjct: 95 SMILNGHIDVVPEGDVNQWDHHPYSGEV-IGGRIYGRGTTDMKGGNVALLLAMEALIESG 153
Query: 151 FQPVRSVYLSFVPDEEIGG 169
+ V V +EE GG
Sbjct: 154 IELKGDVIFQSVIEEESGG 172
|
Length = 422 |
| >gnl|CDD|193514 cd03894, M20_ArgE, M20 Peptidase acetylornithine deacetylase | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRRL 146
++L+ HTDVVP + +WS PF + G ++ RG+ DMK C L A L
Sbjct: 58 GGLVLSGHTDVVPVDGQRWSSDPFTLT-ERDGRLYGRGTCDMKGFLACA----LAAAPEL 112
Query: 147 KASGFQPVRSVYLSFVPDEEIG 168
A+ + R ++L+F DEE+G
Sbjct: 113 AAADLK--RPLHLAFSYDEEVG 132
|
Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16) subfamily. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 372 |
| >gnl|CDD|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42 | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 353 NPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFL 412
P+ + L A GK TD RYF E G+P + P H NE +
Sbjct: 168 TPFVDALLAAAEDVGGKPVPAISIGGGTDGRYFAELGIPGVTLGPPGTA--NYHSPNETV 225
Query: 413 NQAEYLKGIDIY 424
+ K I +
Sbjct: 226 SLESLEKAIKVL 237
|
Zinc peptidases play vital roles in metabolic and signaling pathways throughout all kingdoms of life. This family corresponds to several clans in the MEROPS database, including the MH clan, which contains 4 families (M18, M20, M28, M42). The peptidase M20 family includes carboxypeptidases such as the glutamate carboxypeptidase from Pseudomonas, the thermostable carboxypeptidase Ss1 of broad specificity from archaea and yeast Gly-X carboxypeptidase. The dipeptidases include bacterial dipeptidase, peptidase V (PepV), a eukaryotic, non-specific dipeptidase, and two Xaa-His dipeptidases (carnosinases). There is also the bacterial aminopeptidase, peptidase T (PepT) that acts only on tripeptide substrates and has therefore been termed a tripeptidase. Peptidase family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. However, several enzymes in this family utilize other first row transition metal ions such as cobalt and manganese. Each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Glutamate carbxypeptidase II and plasma glutamate carboxypeptidase hydrolyze dipeptides. Peptidase families M18 and M42 contain metalloaminopeptidases. M18 is widely distributed in bacteria and eukaryotes. However, only yeast aminopeptidase I and mammalian aspartyl aminopeptidase have been characterized in detail. Some of M42 (also known as glutamyl aminopeptidase) enzymes exhibit aminopeptidase specificity while others also have acylaminoacylpeptidase activity (i.e. hydrolysis of acylated N-terminal residues). Length = 237 |
| >gnl|CDD|193526 cd05649, M20_ArgE_DapE_like4, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 76/374 (20%), Positives = 127/374 (33%), Gaps = 73/374 (19%)
Query: 85 GSNPQLPSILLNSHTDVVP-SEPSKWSHHPFGAHLDSQGNIFARGSQDMK--CVGMQYLE 141
G IL ++H D VP + +W PFG ++ G I+ RG+ DMK M Y
Sbjct: 49 GGGKP-KIILFDAHIDTVPVGDREQWRFDPFGGEIE-DGRIYGRGTSDMKGGLAAMVY-- 104
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG---IVLDEGLAST 198
A + LK G ++Y++ EE +G A ++ + +V+ E +
Sbjct: 105 AAKILKDLGLDFAGTIYVTGTVHEED--CEG---VAWRYIIEEDGIKPDFVVIGE--PTD 157
Query: 199 TEDYRAFYAERCPWWLVIKARGAPGHGA--KLYDNSAMENLFKSIESVRRFRASQFDLVK 256
R +R + ++ +G H + + N+ + + + I +R + ++
Sbjct: 158 LNIKR---GQRGRAEIRVETKGRSAHSSAPERGVNAIYK-MARIITELRELNPPEHPVLG 213
Query: 257 AGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEE 316
G + V F PS + P D R E+ E V
Sbjct: 214 KGT------LVVTDIFSS--PPS-----ASAVPDYCRITLDRR---LLVGETRE--SVLA 255
Query: 317 WAPASRNMTFELGQFKQRASLHDK-----FGRPILTATDSSN----PWWNLLE------- 360
++ K L K P T P W E
Sbjct: 256 ----------QIRDLKAVKGLEAKVSVATGKEPSYTGEVIEAERYFPAWLNEEDHELVKA 305
Query: 361 --EAVRKANGKLGKPEIFPASTDARYFR-ERGLPAIGFSPMANTPILLHDHNEFLNQAEY 417
EA + G + + ST+ + E G+P IGF P L H NE++ +
Sbjct: 306 ALEAYKALFGD-PLIDKWRFSTNGSHIAGEAGIPTIGFGPGDE--ELAHTPNEYVELEQL 362
Query: 418 LKGIDIYESIIKAY 431
+K Y +I
Sbjct: 363 VKAAAGYAAIPLEL 376
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial and archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 376 |
| >gnl|CDD|193528 cd05651, M20_ArgE_DapE_like5, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 32/231 (13%)
Query: 88 PQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
P+ILLNSH D V P+ W+ PF ++ G ++ GS D + L L
Sbjct: 54 EGKPTILLNSHHDTVK--PNAGWTRDPFEP-VEEGGKLYGLGSNDAGASLVSLLATFLHL 110
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
+ G ++ +EEI G +G E L++ IV TE A
Sbjct: 111 YSEGPLKYNLIFA-ASAEEEISGKNGLESLLPE--LPPLDLAIV-----GEPTEMQPAI- 161
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV- 265
AE+ L A+G GH A+ ++A ++K+++ ++ R +F L G V
Sbjct: 162 AEKGLLVLDCTAKGKAGHAARNEGDNA---IYKALDDIQWLRNFRFPKKSELL---GPVK 215
Query: 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEE 316
++V ++AGT N+ P DIR TT+A + E I E
Sbjct: 216 MTVTQ--IQAGTQH------NVVPDSCTFTVDIR---TTEAYTNE-EIFEI 254
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 342 |
| >gnl|CDD|193529 cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 67/257 (26%), Positives = 95/257 (36%), Gaps = 45/257 (17%)
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK-CVGMQ 138
+ +PGS Q P +LL SH D VP PF + I+ RGS D K V Q
Sbjct: 49 VYAYPGSKRQ-PRVLLTSHIDTVP---------PFIPYSIDGDFIYGRGSVDAKGSVAAQ 98
Query: 139 YLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS-HVFNSLNVGIVLDEGLAS 197
+ A L A G V L FV EE GG DG + D + ++ G + LAS
Sbjct: 99 II-AAEELLAEGEIGEGDVGLLFVVGEETGG-DGMKAANDLGLGWEAVIFGEPTELKLAS 156
Query: 198 TTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKS-IESVRRFRASQFDLVK 256
+ F + A+G H S L S IE + A L
Sbjct: 157 GHKGALRF---------NVTAKGKAAH-------SGYPELGISAIEKLLEALA---KLRD 197
Query: 257 AGLKAEGEV--VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLE--RR 312
A L + + ++N+ ++ G + N+ P+ AEA IR+ E + R
Sbjct: 198 ADLPSSELLGPTTLNIGLIEGGVAA------NVIPAHAEASVAIRL-AADPPEVKDIVER 250
Query: 313 IVEEWAPASRNMTFELG 329
V + F
Sbjct: 251 AVAGILTEDIELVFTSE 267
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly fungal, and have been inferred by homology as being related to both ArgE and DapE. Length = 335 |
| >gnl|CDD|130947 TIGR01892, AcOrn-deacetyl, acetylornithine deacetylase (ArgE) | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 67/307 (21%), Positives = 117/307 (38%), Gaps = 34/307 (11%)
Query: 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQ 152
+ L+ HTDVVP + + W+ PF + G ++ RG+ DMK L A L A +
Sbjct: 61 LALSGHTDVVPYDDAAWTRDPFRLT-EKDGRLYGRGTCDMKGFLACALAAAPDLAAEQLK 119
Query: 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPW 212
+ ++L+ DEE+G GA K ++ ++ E A +
Sbjct: 120 --KPLHLALTADEEVGCT-GAPKMIEAGAGRPR--HAIIGE-----PTRLIPVRAHKGYA 169
Query: 213 WLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV--VSVNM 270
+ RG GH + Y +S + +F++ ++R L++ L ++N+
Sbjct: 170 SAEVTVRGRSGHSS--YPDSGVNAIFRAGRFLQRLVHLADTLLREDLDEGFTPPYTTLNI 227
Query: 271 AFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQ 330
++ G N+ P E F+ R P D E L +++E A A
Sbjct: 228 GVIQGGKAV------NIIPGACEFVFEWRPIPGMDPEELL-QLLETIAQALVRDEPGFEV 280
Query: 331 FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGL 390
+ S T+ L + + +G PE+ T+A F+E G
Sbjct: 281 QIEVVSTDPGV------NTEPDAE----LVAFLEELSGN--APEVVSYGTEAPQFQELGA 328
Query: 391 PAIGFSP 397
A+ P
Sbjct: 329 EAVVCGP 335
|
This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes [Amino acid biosynthesis, Glutamate family]. Length = 364 |
| >gnl|CDD|193530 cd05653, M20_ArgE_LysK, M20 Peptidase acetylornithine deacetylase/acetyl-lysine deacetylase | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 90/404 (22%), Positives = 138/404 (34%), Gaps = 109/404 (26%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE-PSKWS 110
++F+ + L E+ E A N ++ +K G P++LL H D VP P +
Sbjct: 23 LAEFLAEIMKELGFEAWIDE-AGN--VVAVKGSGG----PTVLLLGHIDTVPGFIPVRIE 75
Query: 111 HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170
G ++ RG+ D K + A R R V + +EE
Sbjct: 76 ----------GGVLYGRGAVDAKGPLAAMILAAARANEPL--GCRLV-VIGAVEEESSSK 122
Query: 171 DGAEKFADSHV-FNSLNVGIVLDE--GLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK 227
GA DS+ + + +G E G T YR L I+ G GH +
Sbjct: 123 -GARHLRDSYPRPDYVIIG----EPSGWDGITLGYRGRL------LLKIRCEGPSGHSSG 171
Query: 228 LYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNL 287
+N A+E+L + +++ E SV +K+GT SPNG
Sbjct: 172 PEEN-AIEDLIDAWNAIKE---------WLENYNSFEFDSVTPTLIKSGT-SPNG----- 215
Query: 288 QPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILT 347
P EAE D+R+PP E L + + LT
Sbjct: 216 TPEEAELTIDVRLPPGVSPEEL------------------------LSEIAGLAPGCELT 251
Query: 348 ATDS--------SNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERG---------- 389
D +NP A+RK GKP R R+ G
Sbjct: 252 VLDRTPPVRVDRNNPLVRAFRRAIRKQG---GKP---------RLVRKTGTSDMNVLAPA 299
Query: 390 --LPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 431
P + + P + L H NE ++ AEY + I + ++
Sbjct: 300 WTCPIVAYGPGDSR--LDHTPNEHIDLAEYERAIKVLVRALEEL 341
|
Peptidase M20 family, acetylornithine deacetylase (ArgE)/acetyl-lysine deacetylase (LysK) subfamily. Proteins in this subfamily are mainly archaeal with related bacterial species and are deacetylases with specificity for both N-acetyl-ornithine and N-acetyl-lysine found within a lysine biosynthesis operon. ArgE catalyzes the conversion of N-acetylornithine to ornithine, while LysK, a homolog of ArgE, has deacetylating activities for both N-acetyllysine and N-acetylornithine at almost equal efficiency. These results suggest that LysK which may share an ancestor with ArgE functions not only for lysine biosynthesis, but also for arginine biosynthesis in species such as Thermus thermophilus. The substrate specificity of ArgE is quite broad in that several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 341 |
| >gnl|CDD|193511 cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 8e-09
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRR 145
P + HTDVVP + WS PF + G ++ RG+ DMK +L A R
Sbjct: 55 PHLCFAGHTDVVPPGDEEGWSSPPFSPTIK-DGMLYGRGAADMKGGIAA----FLAAAER 109
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDG 172
A S+ DEE +G
Sbjct: 110 FVAEYPDHKGSISFLITSDEEGPAING 136
|
Peptidase M20 family, proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE; aspartyl dipeptidase; succinyl-diaminopimelate desuccinylase) subfamily. DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. It has been shown that DapE is essential for cell growth and proliferation. DapEs have been purified from Escherichia coli and Haemophilus influenzae, while the genes that encode for DapEs have been sequenced from several bacterial sources such as Corynebacterium glutamicum, Helicobacter pylori, Neisseria meningitidis and Mycobacterium tuberculosis. DapE is a small, dimeric enzyme that requires two zinc atoms per molecule for full enzymatic activity. All of the amino acids that function as metal binding ligands are strictly conserved in DapE. Length = 366 |
| >gnl|CDD|237578 PRK13983, PRK13983, diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 84/360 (23%), Positives = 133/360 (36%), Gaps = 68/360 (18%)
Query: 77 PLILLKWPGSNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQD--MK 133
P I+ K PG + + ++ + SH DVVP + S W PF + G I+ RGS+D
Sbjct: 64 PNIVAKIPGGDGKR-TLWIISHMDVVPPGDLSLWETDPFKPVVKD-GKIYGRGSEDNGQG 121
Query: 134 CVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVL 191
V A++ L G +P ++ L+FV DEE G G + H +F ++ +V
Sbjct: 122 IVSSLL--ALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVP 179
Query: 192 DEGLA--STTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMEN-------LFKSIE 242
D G S E AE+ WL +G H S EN
Sbjct: 180 DAGNPDGSFIE-----IAEKSILWLKFTVKGKQCHA------STPENGINAHRAAADFAL 228
Query: 243 SVRRFRASQFDLVKAGLKAEGEVVSVNMA-F----LKAGTPSPNGFVMNLQPSEAEAGFD 297
+ +F+ A+ + + F +A + N P FD
Sbjct: 229 ELDEALHEKFN-------AKDPLFDPPYSTFEPTKKEANVDNINTI-----PGRDVFYFD 276
Query: 298 IRVPPTTDAESLERRI------VEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDS 351
RV P D + + + I EE + E+ Q +Q T
Sbjct: 277 CRVLPDYDLDEVLKDIKEIADEFEEEYGVK--IEVEIVQREQAPP-----------PTPP 323
Query: 352 SNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEF 411
+ L+ A+++ G K T A + R++G PA+ +S + T H NE+
Sbjct: 324 DSEIVKKLKRAIKEVRGIEPKVGGIGGGTVAAFLRKKGYPAVVWSTLDETA---HQPNEY 380
|
Length = 400 |
| >gnl|CDD|193555 cd05680, M20_dipept_like_3, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 77 PLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCV 135
P++ +W P P++L+ H DV P +P W PF + G I+ARG+ D K
Sbjct: 51 PIVYAEWLH-APGAPTVLVYGHYDVQPPDPLELWESPPFEPTIR-DGRIYARGASDDKGQ 108
Query: 136 GMQYLEAIRR-LKASGFQPVRSVYLSFVPDEEIGG 169
+L+A+ L +G PV +L +EEIG
Sbjct: 109 VFTHLKALEALLAVTGRLPVNVKFL-IEGEEEIGS 142
|
Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 437 |
| >gnl|CDD|193494 cd02697, M20_like, M20 Zn-peptidases include exopeptidases | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 93/347 (26%), Positives = 132/347 (38%), Gaps = 54/347 (15%)
Query: 58 AQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSK-WSHHPFGA 116
A A +ES T LI+ G P P++ LN+H DVVP P W+H P+GA
Sbjct: 50 AVVRAAGMESAT-------NLIVRHRFGDGP--PTVALNAHGDVVP--PGGGWTHDPYGA 98
Query: 117 HLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176
++ G ++ RG+ K Y A+R L ASG +V L F DEE GG G
Sbjct: 99 EIE-DGWLYGRGAAVSKSDFATYTFALRALIASGAPLNGTVELHFTYDEETGGEAGP--- 154
Query: 177 ADSHVFNSLNVGIVLDEGLA------STTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD 230
G +LD+GL S Y A L + RG H A
Sbjct: 155 -----------GWLLDQGLTRPDYAISAGFSYGVVTAHNGCLHLEVTVRGKSAHAAWPDT 203
Query: 231 N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289
A+E K + ++ +R + A V + L G S G N+ P
Sbjct: 204 GCDALEAATKLLNALYAYRDTLAQRTSA-------VPGIGSPTLVVGLIS-GGINTNVVP 255
Query: 290 SEAEAGFDIRVPPTTDAESLE---RRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPIL 346
D R+ P E +E R ++E +T ++ +R L RP L
Sbjct: 256 DRVTFRLDRRIIPEEQPEEVEAELRAVIERAVRGVPGITVDV----KRILL----ARP-L 306
Query: 347 TATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAI 393
S P L++ G+ P TDAR + E G+P +
Sbjct: 307 VPLPGSAPLVAALQQQAEAVFGEPVPAVGVPLYTDARLYAEAGIPTV 353
|
Peptidase M20 family; uncharacterized subfamily. These hypothetical proteins have been inferred by homology to be exopeptidases: carboxypeptidases, dipeptidases and a specialized aminopeptidase. In general, the peptidase hydrolyzes the late products of protein degradation in order to complete the conversion of proteins to free amino acids. Members of this subfamily may bind metal ions such as zinc. Length = 395 |
| >gnl|CDD|233618 TIGR01887, dipeptidaselike, dipeptidase, putative | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 76/391 (19%), Positives = 121/391 (30%), Gaps = 86/391 (21%)
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSV 157
H DVVP W+ PF + G I+ RG+ D K + A++ LK G + + +
Sbjct: 75 HLDVVP-AGDGWTSPPFEPTIK-DGRIYGRGTLDDKGPTIAAYYAMKILKELGLKLKKKI 132
Query: 158 -----------------YLS--------FVPDEE---IGGHDGAEKF------------- 176
Y F PD E I G G
Sbjct: 133 RFIFGTDEESGWKCIDYYFEHEEMPDIGFTPDAEFPIIYGEKGITTLEIKFKDDTEGDVV 192
Query: 177 --------ADSHVFNSLNVGIVLDEGLASTTEDYRAFYA-------ERCPWWLVIKARGA 221
A + V + I + + F A E L I G
Sbjct: 193 LESFKAGEAYNMVPDHATAVISGKKLTEVEQLKFVFFIAKELEGDFEVNDGTLTITLEGK 252
Query: 222 PGHGA--KLYDNSAMENLFKSIESVRRFRAS----QFDLVKAGLKAEGEVVSVNMAFLKA 275
HG+ + N+A L + + + QF GE + + +
Sbjct: 253 SAHGSAPEKGINAATY-LALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIKFHDDVS 311
Query: 276 GTPSPNGFVMNLQPSEA-EAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQR 334
G + N V++ + +EA G ++R P D ++ + E A S + L + +
Sbjct: 312 GDLTMNVGVIDYENAEAGLIGLNVRYPVGNDPDT---MLKNELAKESGVVEVTLNGYLK- 367
Query: 335 ASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIG 394
P+ D P L + K G G+P T AR G +
Sbjct: 368 ---------PLYVPKDD--PLVQTLMKVYEKQTGDEGEPVAIGGGTYARLM-PNG---VA 412
Query: 395 FSPM-ANTPILLHDHNEFLNQAEYLKGIDIY 424
F + +H NE++ + L IY
Sbjct: 413 FGALFPGEEDTMHQANEYIMIDDLLLATAIY 443
|
This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific. Length = 447 |
| >gnl|CDD|237268 PRK13013, PRK13013, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 5/136 (3%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
+ NSH DVV W+ PFG + G I+ RG+ DMK + A A
Sbjct: 85 DCVHFNSHHDVVEVG-HGWTRDPFGGEVKD-GRIYGRGACDMKGGLAASIIAAEAFLAVY 142
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
S+ +S DEE GG G A+ F+ V V+ + R R
Sbjct: 143 PDFAGSIEISGTADEESGGFGGVAYLAEQGRFSPDRVQHVI---IPEPLNKDRICLGHRG 199
Query: 211 PWWLVIKARGAPGHGA 226
WW ++ RG HG+
Sbjct: 200 VWWAEVETRGRIAHGS 215
|
Length = 427 |
| >gnl|CDD|237265 PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 6e-08
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK 133
P + HTDVVP + W+ PF + G ++ RG+ DMK
Sbjct: 59 PHLCFAGHTDVVPPGDLEAWTSPPFEPTIR-DGMLYGRGAADMK 101
|
Length = 375 |
| >gnl|CDD|193516 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 71/361 (19%), Positives = 121/361 (33%), Gaps = 78/361 (21%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111
++++ + L LE ++ N ++ + GS PS+LL++H D V E + +
Sbjct: 20 RAEYVAERLRELGLEDVYIDERGN---VIGRRKGSGG-GPSLLLSAHLDTVFPEGTDVT- 74
Query: 112 HPFGAHLDSQGNIFARGSQDMKCVGMQ-YLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170
+ G ++ G D G+ L A R L+A+G + + EE G
Sbjct: 75 ----VRREG-GRLYGPGIGDDTA-GLAALLAAARALRAAGIELAGDLLFVANVGEEGLGD 128
Query: 171 DGAEKF--------ADSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGA 221
+ D + + + G + G+ S I G
Sbjct: 129 LRGVRHLFDHGGVAIDGFIAIDGTDPGRITHGGVGSR--------------RFRITFSGP 174
Query: 222 PGHGAKL-YDNSAMENLFKSIESVRRFRASQFDLVK--AGLKAEGEVVSVNMAFLKAGTP 278
GH SA+ L ++I + +R G G SVN
Sbjct: 175 GGHSWGAFGHPSAIHALGRAIAELADWRVPSAPKTTFNVGRIGGGT--SVN-------AI 225
Query: 279 SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLER---RIVEEWAPASRNMTFELGQFKQRA 335
+EAE D+R ++ER V E + ++ ++
Sbjct: 226 ----------AAEAEMELDLRSNSRDALAAVEREFLAAVAEARARAPGVSLDI------- 268
Query: 336 SLHDKFG-RPILTATDSSNPWWNLLEEAVRKANGKLG--KPEIFPASTDARYFRERGLPA 392
+ G RP S L +A R A +G +P + STDA G+PA
Sbjct: 269 ---EPIGDRPAGETPPDS-----PLVQAARAAWRAVGGAEPVLSSGSTDANVPLSLGIPA 320
Query: 393 I 393
+
Sbjct: 321 V 321
|
Peptidase M20 family, Poly(aspartic acid) hydrolase (PAA hydrolase)-like subfamily. PAA hydrolase enzymes are involved in alpha,beta-poly(D,L-aspartic acid) (tPAA) biodegradation. PAA is being extensively studied as a replacement for commercial polycarboxylate components since it can be degraded by enzymes from isolated tPAA degrading bacteria. Thus far, two types of PAA degrading bacteria (Sphingomonas sp. KT-1 and Pedobacter sp. KP-2) have been investigated in detail; the former can completely degrade tPAA of low-molecular weights below 5000, while the latter can degrade high molecular weight tPAA to release oligo(aspartic acid) (OAA) as a product, suggesting two kinds of PAA degrading enzymes. It has been shown that PAA hydrolase-1 from Sphingomonas sp. KT-1 hydrolyzes beta,beta-aspartic acid units in tPAA to produce OAA, and it is suggested that PAA hydrolase-2 hydrolyzes OAA to aspartic acid. Length = 359 |
| >gnl|CDD|193561 cd08013, M20_ArgE_DapE_like3, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 21/149 (14%)
Query: 28 DSIIERFRAYLQIDTSQPN-----PDYTNASKFILAQAEALSLESQTLEFAKNKPLIL-- 80
D +++ + ++ID+S P + +I +E LE +P ++
Sbjct: 1 DDVVDLTQTLVRIDSSNPTLGPGGAGEAEIAAYIADWLRHRGIEVHRLEGTPGRPSVVGV 60
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK---CVGM 137
L+ G S++LN H D V + P + + G ++ RG+ DMK M
Sbjct: 61 LRGTGGGR---SLMLNGHIDTVS--LGGYEGDPLSGRI-ADGRLYGRGAYDMKGGLAAMM 114
Query: 138 QYLEAIRRLKASGFQPVRSVYLSFVPDEE 166
L ++ G V L+ V DEE
Sbjct: 115 AALATAKKSPLRG-----DVILAAVADEE 138
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly fungal and bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 377 |
| >gnl|CDD|193560 cd08012, M20_ArgE-related, M20 Peptidases with simlarity to acetylornithine deacetylases | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 36 AYLQIDTSQPNPDYTNASKFILAQAEALS------LESQTLEFAKNKPLILLKWPGSNPQ 89
LQ + P+ NA + +L + S LE + + + + + +++++PG+
Sbjct: 18 KTLQNNPPALVPEEDNAVRHVLETLKPYSTENGGPLEIEHVAYPEGRGNLIVEYPGTGEG 77
Query: 90 LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGN-IFARGSQDMKCVGMQYL--EAIRRL 146
+ SH DVVP+ P W PF L G+ ++ RG+ D C+G L + R+L
Sbjct: 78 KILSFVGSHMDVVPANPEAWEFDPF--SLSIDGDKLYGRGTTD--CLGHVALVTDLFRQL 133
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDG 172
R+V F+ +EE G
Sbjct: 134 AERKPALKRTVVAVFIANEENSEIPG 159
|
Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16)-related subfamily. Proteins in this subfamily have not yet been characterized, but have been predicted to have deacetylase activity. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 423 |
| >gnl|CDD|236039 PRK07522, PRK07522, acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRRL 146
I+L+ HTDVVP + W+ PF G ++ RG+ DMK L A+ L
Sbjct: 65 GGIVLSGHTDVVPVDGQAWTSDPFRLTERD-GRLYGRGTCDMKGFIAAA----LAAVPEL 119
Query: 147 KASGFQPVRSVYLSFVPDEEIG 168
A+ + R ++L+F DEE+G
Sbjct: 120 AAAPLR--RPLHLAFSYDEEVG 139
|
Length = 385 |
| >gnl|CDD|235965 PRK07205, PRK07205, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 85 GSNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAI 143
G +L +IL H DVVP + S W PF A G +F RG+QD K M L A+
Sbjct: 72 GQGEELLAIL--CHLDVVPEGDLSDWQTPPFEAVE-KDGCLFGRGTQDDKGPSMAALYAV 128
Query: 144 RRLKASGFQPVRSVYLSFVPDEEI 167
+ L +G Q + + F DEE
Sbjct: 129 KALLDAGVQFNKRIRFIFGTDEET 152
|
Length = 444 |
| >gnl|CDD|236285 PRK08554, PRK08554, peptidase; Reviewed | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111
KFI E+ +ES+ +E K+ + G P +L +H DVVP P +W+
Sbjct: 29 CPKFIKDTLESWGIESELIE--KDGYYAVYGEIGEG--KPKLLFMAHFDVVPVNPEEWNT 84
Query: 112 HPFGAHLDSQGN-IFARGSQDMKCVGMQYLEAIRRLKASGFQPVR-SVYLSFVPDEEIGG 169
PF L +G+ + RGS D K + A++ L +P+ V +F DEEIGG
Sbjct: 85 EPF--KLTVKGDKAYGRGSADDKGNVASVMLALKELSK---EPLNGKVIFAFTGDEEIGG 139
Query: 170 HDG---AEKFAD 178
AEK +
Sbjct: 140 AMAMHIAEKLRE 151
|
Length = 438 |
| >gnl|CDD|235802 PRK06446, PRK06446, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 92 SILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
++L+ +H DV P +P S+W PF A +++ G I+ARG+ D K M L AI+ L
Sbjct: 64 TLLIYNHYDVQPVDPLSEWKRDPFSATIEN-GRIYARGASDNKGTLMARLFAIKHLIDKH 122
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEG 194
V +V + +EEIG + E F + + N L V+ EG
Sbjct: 123 KLNV-NVKFLYEGEEEIGSPN-LEDFIEKNK-NKLKADSVIMEG 163
|
Length = 436 |
| >gnl|CDD|193511 cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 8e-06
Identities = 43/148 (29%), Positives = 60/148 (40%), Gaps = 26/148 (17%)
Query: 286 NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPI 345
N+ P E EA F+IR AESL+ RI + T E G P
Sbjct: 240 NVIPGELEAMFNIRFSTEHTAESLKARIEAILDKHGLDYTLEWEL----------SGEPF 289
Query: 346 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST-----DARYFRERGLPAIGFSPMAN 400
LT + + A++K G PE+ ST DAR+ G P + F +
Sbjct: 290 LTKP---GKLVDAVSAAIKKVTGI--TPEL---STSGGTSDARFIAAYGCPVVEFGLVNA 341
Query: 401 TPILLHDHNEFLNQAEYLKGIDIYESII 428
T +H NE ++ A+ K IYE I+
Sbjct: 342 T---IHKVNERVSVADLEKLTAIYERIL 366
|
Peptidase M20 family, proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE; aspartyl dipeptidase; succinyl-diaminopimelate desuccinylase) subfamily. DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. It has been shown that DapE is essential for cell growth and proliferation. DapEs have been purified from Escherichia coli and Haemophilus influenzae, while the genes that encode for DapEs have been sequenced from several bacterial sources such as Corynebacterium glutamicum, Helicobacter pylori, Neisseria meningitidis and Mycobacterium tuberculosis. DapE is a small, dimeric enzyme that requires two zinc atoms per molecule for full enzymatic activity. All of the amino acids that function as metal binding ligands are strictly conserved in DapE. Length = 366 |
| >gnl|CDD|181495 PRK08596, PRK08596, acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLP-SILLNSHTDVVPSEPSK-W 109
A +FI L + N P ++ G+ S+++N H DV + W
Sbjct: 38 AQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAW 97
Query: 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQ-YLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
+PF + G ++ RG+ DMK G+ L AI+ L +G + + V EE+G
Sbjct: 98 ETNPFEPTIK-DGWLYGRGAADMKG-GLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVG 155
|
Length = 421 |
| >gnl|CDD|193551 cd05676, M20_dipept_like_CNDP, M20 cytosolic nonspecific dipeptidases including anserinase and serum carnosinase | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 28 DSIIERFRAYLQI--DTSQPN--PDYTNASKFILAQAEAL-------SLESQTLEFAKNK 76
D I+R + I ++ P P+ +++ + + L L QTL +
Sbjct: 10 DEYIDRLAEAVAIPSVSADPEKRPEVIRMMEWVADRLKKLGATVELVDLGKQTLPGEELP 69
Query: 77 -PLILLKWPGSNPQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKC 134
P ++L GS+P ++L+ H DV P++ W PF + G ++ RGS D K
Sbjct: 70 LPPVILGRLGSDPSKKTVLIYGHLDVQPAKLEDGWDTDPFTLT-EKDGKLYGRGSTDDKG 128
Query: 135 VGMQYLEAIRRLKASG 150
+ +L AI + G
Sbjct: 129 PVLGWLNAIEAYQKLG 144
|
Peptidase M20 family, CNDP (cytosolic nonspecific dipeptidase) subfamily including anserinase (Xaa-methyl-His dipeptidase, EC 3.4.13.5), 'serum' carnosinase (beta-alanyl-L-histidine dipeptidase; EC 3.4.13.20), and some uncharacterized proteins. Two genes, CN1 and CN2, coding for proteins that degrade carnosine (beta-alanyl-L-histidine) and homocarnosine (gamma-aminobutyric acid-L-histidine), two naturally occurring dipeptides with potential neuroprotective and neurotransmitter functions, have been identified. CN1 encodes for serum carnosinase and has narrow substrate specificity for Xaa-His dipeptides, where Xaa can be beta-alanine (carnosine), N-methyl beta-alanine, alanine, glycine and gamma-aminobutyric acid (homocarnosine). CN2 corresponds to the cytosolic nonspecific dipeptidase (CNDP; EC 3.4.13.18) and is not limited to Xaa-His dipeptides. CNDP requires Mn(2+) for full activity and does not hydrolyze homocarnosine. Anserinase is a dipeptidase that mainly catalyzes the hydrolysis of N-alpha-acetylhistidine. Length = 466 |
| >gnl|CDD|193509 cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 49/232 (21%), Positives = 82/232 (35%), Gaps = 43/232 (18%)
Query: 214 LVIKARGAPGHGAK--------------LYDNSAMENLFKSIESVRRFRASQFDLVKAGL 259
+VI +G H + L D ++ + + + K G+
Sbjct: 248 VVITVKGKSAHASTPEKGVNAITYLAKFLADLPLDGAAKAFLKFLAKLLGEDYYGEKLGI 307
Query: 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP 319
E EV L + N ++N E E DIR P T D E + +++ + A
Sbjct: 308 AFEDEV----SGPL-----TLNPGIINYDDGELELTIDIRYPVTADPEDIVKQLKK--AA 356
Query: 320 ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAS 379
A T E + +P+ DS P L + + G+ KP
Sbjct: 357 AEYGFTVE----------VIEHLKPLYVPPDS--PLVKTLLDVYEEVTGEEAKPIAIGGG 404
Query: 380 TDARYFRERGLPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIY-ESIIK 429
T AR G + F P +H +E+++ + LK + IY E+I +
Sbjct: 405 TYARLL-PNG---VAFGPLFPGEEGTMHQADEYISIDDLLKALKIYAEAIYE 452
|
Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminal, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Length = 453 |
| >gnl|CDD|236379 PRK09104, PRK09104, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 16/153 (10%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNK------PLILL 81
D+ +ER A L+I + +P Y + A+ L + +L F + P+++
Sbjct: 17 DASLERLFALLRIPSISTDPAYAADCR---KAADWLVADLASLGFEASVRDTPGHPMVVA 73
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGN----IFARGSQDMKCVG 136
G P +L H DV P +P W PF + + I ARG+ D K
Sbjct: 74 HHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQL 133
Query: 137 MQYLEAIRRLKA-SGFQPVRSVYLSFVPDEEIG 168
M ++EA R KA +G PVR L F +EE G
Sbjct: 134 MTFVEACRAWKAVTGSLPVRVTIL-FEGEEESG 165
|
Length = 464 |
| >gnl|CDD|193553 cd05678, M20_dipept_like_1, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 27/163 (16%)
Query: 30 IIERFRAYLQI--DTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN 87
+ FR L I D + P NA ++ E +Q L PL+L + P +
Sbjct: 1 SLPEFRELLSIPNDATDPADIQKNA-DWLEKAFEKRGFTTQRLP-TGGLPLLLAERP-TA 57
Query: 88 PQLPSILLNSHTDVVPSEPSKW-SHHPF---------------------GAHLDSQGNIF 125
+IL +H D P +PSKW PF +D + IF
Sbjct: 58 GARKTILFYAHFDGQPVDPSKWDQKSPFTPVLKEKDADGNWTLPNWDLLKQEIDPEWRIF 117
Query: 126 ARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
AR + D K + +L A+ LKA+G P ++ + +EE G
Sbjct: 118 ARSASDDKGPIIMFLAALDALKAAGIPPAVNIKVILDSEEEKG 160
|
Peptidase M20 family, unknown dipeptidase-like subfamily 1 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 466 |
| >gnl|CDD|237265 PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 5e-05
Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 33/163 (20%)
Query: 275 AGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQR 334
AGT N+ P E EA F+ R AESL+ R+ L +
Sbjct: 238 AGTG-----ATNVIPGELEAQFNFRFSTEHTAESLKARVEA-----------ILDKHGLD 281
Query: 335 ASLHDKF-GRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST-----DARYFRER 388
+L G P LT + + A+ G PE+ ST DAR+ +
Sbjct: 282 YTLEWTLSGEPFLTPP---GKLVDAVVAAIEAVTGI--TPEL---STSGGTSDARFIADY 333
Query: 389 GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 431
G + F P+ T +H NE ++ A+ K IYE I++
Sbjct: 334 GAQVVEFGPVNAT---IHKVNECVSVADLEKLTRIYERILERL 373
|
Length = 375 |
| >gnl|CDD|193509 cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 98 HTDVVPSEPSKWSHHPFGAHL-DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156
H DVVP W+ PF + D G ++ RG+ D K + L A++ LK G +
Sbjct: 79 HLDVVP-AGEGWTTDPFEPTIKD--GKLYGRGTSDDKGPAIAALYALKALKDLGLPLKKR 135
Query: 157 VYLSFVPDEEIG 168
+ L F DEE G
Sbjct: 136 IRLIFGTDEESG 147
|
Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminal, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Length = 453 |
| >gnl|CDD|183836 PRK13004, PRK13004, peptidase; Reviewed | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 85 GSNPQLPSILLNSHTDVVP-SEPSKWSHHPFGAHLDSQGNIFARGSQDMK 133
G +L I ++H D V + W PF D G I+ RG+ D K
Sbjct: 66 GHGKKL--IAFDAHIDTVGIGDIKNWDFDPFEGEED-DGRIYGRGTSDQK 112
|
Length = 399 |
| >gnl|CDD|193506 cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 9e-05
Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 23/120 (19%)
Query: 58 AQAEALSLESQTLEFAKNK-PLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGA 116
+ EAL E + + ++ + G P ILL H D V P G
Sbjct: 30 EELEALGFEVERIPGPDEFGDHLVATFKGGGG--PRILLLGHLDTV---------FPKG- 77
Query: 117 HLDSQ------GNIFARGSQDMK--CVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
L + + G DMK V L A++ LKA G + + DEEIG
Sbjct: 78 TLAFRPFRVDGDRAYGPGVADMKGGIVVA--LYALKALKALGLLDDLPITVLLNSDEEIG 135
|
Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells. Length = 363 |
| >gnl|CDD|168961 PRK07473, PRK07473, carboxypeptidase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 9e-05
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGA----HLDSQGN-IFARGSQDMKCVG 136
++P P IL+ H D V HP G +GN + G DMK
Sbjct: 67 RFPHPRQGEPGILIAGHMDTV---------HPVGTLEKLPWRREGNKCYGPGILDMKGGN 117
Query: 137 MQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
LEAIR+L +G + + F PDEE+G
Sbjct: 118 YLALEAIRQLARAGITTPLPITVLFTPDEEVG 149
|
Length = 376 |
| >gnl|CDD|235346 PRK05111, PRK05111, acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 9e-05
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 29 SIIERFRAYLQIDT---SQPNPDYTNASKFI--LAQ-AEAL--SLESQTLEFAKNKPLIL 80
S IE +RA + + + P D +N + I LA E L ++E Q + + K L
Sbjct: 6 SFIEMYRALIATPSISATDPALDQSNRA-VIDLLAGWFEDLGFNVEIQPVPGTRGK-FNL 63
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGN-IFARGSQDMKCVGMQY 139
L GS +LL HTD VP + +W+ PF L ++ G+ DMK
Sbjct: 64 LASLGSGEG--GLLLAGHTDTVPFDEGRWTRDPF--TLTEHDGKLYGLGTADMKGFFAFI 119
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
LEA+R + + + + +Y+ DEE GA FA++
Sbjct: 120 LEALRDIDLTKLK--KPLYILATADEE-TSMAGARAFAEAT 157
|
Length = 383 |
| >gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 28 DSIIERFRAYLQIDT----SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKW 83
++ +E + +L+I + S+ D A++++ E LE + P++ W
Sbjct: 14 EAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADW 73
Query: 84 PGSNPQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEA 142
P P++L+ H DV P +P W PF + G ++ARG+ D K +L+A
Sbjct: 74 L-HAPGKPTVLIYGHYDVQPVDPLNLWETPPFEPTI-RDGKLYARGASDDKGQVFMHLKA 131
Query: 143 IRR-LKASGFQPVRSVYLSFVPDEEIG 168
+ LK G PV +V +EEIG
Sbjct: 132 VEALLKVEGTLPV-NVKFCIEGEEEIG 157
|
Length = 456 |
| >gnl|CDD|193513 cd03893, M20_Dipept_like, M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 77 PLILLKWPGSNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCV 135
P +L P P++LL +H DV P+ + W PF + G ++ RG+ D K
Sbjct: 52 PAVLAHRPAP-EGAPTVLLYAHYDVQPAGDEDAWDSDPFTL-TERDGRLYGRGAADDKGG 109
Query: 136 GMQYLEAIRRLKASGFQPVRSVYLSFVPD--EEIGGHDGAEKFADSH 180
+L A+R L G PV + + + EEIG G E + H
Sbjct: 110 IAAHLAALRALGGLGDLPVG---VKVIIEGEEEIGS-PGLEALLEEH 152
|
Peptidase M20 family, dipeptidase-like subfamily. This group contains a large variety of enzymes, including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase), canosinase, DUG2 type proteins, as well as many proteins inferred by homology to be dipeptidases. These enzymes have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Substrates of CNDP are varied and not limited to Xaa-His dipeptides. DUG2 proteins contain a metallopeptidase domain and a large N-terminal WD40 repeat region, and are involved in the alternative pathway of glutathione degradation. Length = 428 |
| >gnl|CDD|130941 TIGR01886, dipeptidase, dipeptidase PepV | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSV 157
H DVVP+ W+ PF +D +G I+ARG+ D K + A++ LK G P + +
Sbjct: 86 HMDVVPAG-EGWTRDPFEPEID-EGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKI 143
Query: 158 YLSFVPDEEIG 168
+EE G
Sbjct: 144 RFVVGTNEETG 154
|
This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme , has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 466 |
| >gnl|CDD|235988 PRK07318, PRK07318, dipeptidase PepV; Reviewed | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSV 157
H DVVP W P+ + G I+ARG+ D K M A++ +K G + V
Sbjct: 87 HLDVVP-AGDGWDTDPYEPVI-KDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKV 144
Query: 158 YLSFVPDEEIGGHD 171
DEE G
Sbjct: 145 RFIVGTDEESGWKC 158
|
Length = 466 |
| >gnl|CDD|193556 cd05681, M20_dipept_like_4, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 31 IERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQ 89
+E R L+I + S N ++ + E L E + L P++ ++ +
Sbjct: 2 LEDLRELLRIPSVSAQNRGIEETAELLKELLEELGAEVEILP-TDGHPVVYAEFDSGAAK 60
Query: 90 LPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR-LK 147
++L +H DV P+EP +W PF + G ++ARG+ D K M L A+R L
Sbjct: 61 --TLLFYNHYDVQPAEPLEEWQSDPFALT-ERGGKLYARGAADDKGELMARLAALRAYLA 117
Query: 148 ASGFQPVRSVYLSFVPD--EEIG 168
G PV + F+ + EE+G
Sbjct: 118 EHGKLPVN---IKFLVEGEEEVG 137
|
Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 430 |
| >gnl|CDD|193506 cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMT 325
+VN+ + GT S N+ P AEA D+R +AE +E +
Sbjct: 217 TTVNVGVISGGTAS------NVVPDHAEAEVDVRFTTAEEAERVEAAL-RALVAT----P 265
Query: 326 FELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAS---TDA 382
G + GRP + T +S L E A ++ +LG A+ +D
Sbjct: 266 PVPG---TTVEVTGGIGRPPMEPTPASEA---LFELA-QEIAAELGLGLEEEATGGGSDG 318
Query: 383 RYFRERGLPAI-GFSPM 398
+ G+P + G P+
Sbjct: 319 NFTAALGVPTLDGLGPV 335
|
Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells. Length = 363 |
| >gnl|CDD|130957 TIGR01902, dapE-lys-deAc, N-acetyl-ornithine/N-acetyl-lysine deacetylase | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 84/397 (21%), Positives = 130/397 (32%), Gaps = 83/397 (20%)
Query: 45 PNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104
P+ NA+KF+ ++ L L+ ++ A N IL K G ILL H D VP
Sbjct: 12 PSGKEANAAKFLEEISKDLGLKL-IIDDAGN--FILGK--GDGH--KKILLAGHVDTVPG 64
Query: 105 E-PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVP 163
P K G ++ RG+ D K + + A L G + V +S +
Sbjct: 65 YIPVKIE----------GGLLYGRGAVDAKGPLIAMIFATWLLNEKGIK----VIVSGLV 110
Query: 164 DEEIGGHDGAEKFADSHVFNSLNVGIVLDE--GLASTTEDYRAFYAERCPWWLVIKARGA 221
DEE GA + D + +++ E G T Y+ L I G
Sbjct: 111 DEE-SSSKGAREVID----KNYPFYVIVGEPSGAEGITLGYKGSLQ------LKIMCEGT 159
Query: 222 PGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPN 281
P H + +A E L + + + K + S N
Sbjct: 160 PFHSS--SAGNAAELLIDYSKKIIEVYKQPENYDKPSIVPTIIRFGE----------SYN 207
Query: 282 GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKF 341
P++ E FD+R PP E + I + E+
Sbjct: 208 DT-----PAKLELHFDLRYPPNNKPEEAIKEIT-----DKFPICLEI------------V 245
Query: 342 GRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAS------TDARYFRERGLPAIGF 395
+NP A+RK K P + + A + +P + +
Sbjct: 246 DETPPYKVSRNNPLVRAFVRAIRKQGMK---PRLKKKTGTSDMNILAPIW---TVPMVAY 299
Query: 396 SPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432
P +T L H E ++ AEYL GI I+
Sbjct: 300 GPGDST--LDHTPQEKISLAEYLIGIKTLMLAIEELW 334
|
This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade. Length = 336 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| TIGR01880 | 400 | Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase | 100.0 | |
| PRK08588 | 377 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| PRK06915 | 422 | acetylornithine deacetylase; Validated | 100.0 | |
| KOG2275 | 420 | consensus Aminoacylase ACY1 and related metalloexo | 100.0 | |
| PRK13013 | 427 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| PRK06837 | 427 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK13983 | 400 | diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK08596 | 421 | acetylornithine deacetylase; Validated | 100.0 | |
| PRK09133 | 472 | hypothetical protein; Provisional | 100.0 | |
| PRK13009 | 375 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| TIGR01910 | 375 | DapE-ArgE acetylornithine deacetylase or succinyl- | 100.0 | |
| TIGR01246 | 370 | dapE_proteo succinyl-diaminopimelate desuccinylase | 100.0 | |
| PRK08201 | 456 | hypothetical protein; Provisional | 100.0 | |
| PRK07906 | 426 | hypothetical protein; Provisional | 100.0 | |
| TIGR01892 | 364 | AcOrn-deacetyl acetylornithine deacetylase (ArgE). | 100.0 | |
| PRK06446 | 436 | hypothetical protein; Provisional | 100.0 | |
| PRK07522 | 385 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK08651 | 394 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| PRK05111 | 383 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK13004 | 399 | peptidase; Reviewed | 100.0 | |
| TIGR03526 | 395 | selenium_YgeY putative selenium metabolism hydrola | 100.0 | |
| TIGR03320 | 395 | ygeY M20/DapE family protein YgeY. Members of this | 100.0 | |
| PRK07338 | 402 | hypothetical protein; Provisional | 100.0 | |
| PRK06133 | 410 | glutamate carboxypeptidase; Reviewed | 100.0 | |
| PRK07473 | 376 | carboxypeptidase; Provisional | 100.0 | |
| PRK09104 | 464 | hypothetical protein; Validated | 100.0 | |
| PRK08262 | 486 | hypothetical protein; Provisional | 100.0 | |
| PRK07907 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK08737 | 364 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK00466 | 346 | acetyl-lysine deacetylase; Validated | 100.0 | |
| PRK07079 | 469 | hypothetical protein; Provisional | 100.0 | |
| PRK08652 | 347 | acetylornithine deacetylase; Provisional | 100.0 | |
| COG0624 | 409 | ArgE Acetylornithine deacetylase/Succinyl-diaminop | 100.0 | |
| PRK04443 | 348 | acetyl-lysine deacetylase; Provisional | 100.0 | |
| TIGR01886 | 466 | dipeptidase dipeptidase PepV. This model represent | 100.0 | |
| TIGR01900 | 373 | dapE-gram_pos succinyl-diaminopimelate desuccinyla | 100.0 | |
| PRK13007 | 352 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| PRK07205 | 444 | hypothetical protein; Provisional | 100.0 | |
| TIGR01883 | 361 | PepT-like peptidase T-like protein. This model rep | 100.0 | |
| PRK13381 | 404 | peptidase T; Provisional | 100.0 | |
| TIGR01902 | 336 | dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d | 100.0 | |
| PRK07318 | 466 | dipeptidase PepV; Reviewed | 100.0 | |
| PLN02280 | 478 | IAA-amino acid hydrolase | 100.0 | |
| PRK06156 | 520 | hypothetical protein; Provisional | 100.0 | |
| PLN02693 | 437 | IAA-amino acid hydrolase | 100.0 | |
| PRK08554 | 438 | peptidase; Reviewed | 100.0 | |
| PRK05469 | 408 | peptidase T; Provisional | 100.0 | |
| TIGR01887 | 447 | dipeptidaselike dipeptidase, putative. This model | 100.0 | |
| TIGR01893 | 477 | aa-his-dipept aminoacyl-histidine dipeptidase. | 100.0 | |
| TIGR01882 | 410 | peptidase-T peptidase T. This model represents a t | 100.0 | |
| PRK15026 | 485 | aminoacyl-histidine dipeptidase; Provisional | 100.0 | |
| TIGR01891 | 363 | amidohydrolases amidohydrolase. This model represe | 100.0 | |
| PRK12893 | 412 | allantoate amidohydrolase; Reviewed | 100.0 | |
| PRK12892 | 412 | allantoate amidohydrolase; Reviewed | 100.0 | |
| PRK09290 | 413 | allantoate amidohydrolase; Reviewed | 100.0 | |
| KOG2276 | 473 | consensus Metalloexopeptidases [Amino acid transpo | 100.0 | |
| PRK12891 | 414 | allantoate amidohydrolase; Reviewed | 100.0 | |
| PRK12890 | 414 | allantoate amidohydrolase; Reviewed | 100.0 | |
| COG1473 | 392 | AbgB Metal-dependent amidase/aminoacylase/carboxyp | 100.0 | |
| TIGR01879 | 401 | hydantase amidase, hydantoinase/carbamoylase famil | 100.0 | |
| TIGR03176 | 406 | AllC allantoate amidohydrolase. This enzyme cataly | 100.0 | |
| PRK13590 | 591 | putative bifunctional OHCU decarboxylase/allantoat | 100.0 | |
| PRK13799 | 591 | unknown domain/N-carbamoyl-L-amino acid hydrolase | 100.0 | |
| PF01546 | 189 | Peptidase_M20: Peptidase family M20/M25/M40 This f | 99.95 | |
| COG2195 | 414 | PepD Di- and tripeptidases [Amino acid transport a | 99.94 | |
| COG4187 | 553 | RocB Arginine degradation protein (predicted deacy | 99.85 | |
| PRK10199 | 346 | alkaline phosphatase isozyme conversion aminopepti | 99.76 | |
| TIGR03106 | 343 | trio_M42_hydro hydrolase, peptidase M42 family. Th | 99.71 | |
| PRK09961 | 344 | exoaminopeptidase; Provisional | 99.7 | |
| TIGR03107 | 350 | glu_aminopep glutamyl aminopeptidase. This model r | 99.6 | |
| COG1363 | 355 | FrvX Cellulase M and related proteins [Carbohydrat | 99.55 | |
| PF07687 | 111 | M20_dimer: Peptidase dimerisation domain This fami | 99.53 | |
| PRK09864 | 356 | putative peptidase; Provisional | 99.51 | |
| KOG2194 | 834 | consensus Aminopeptidases of the M20 family [Postt | 98.82 | |
| PF04389 | 179 | Peptidase_M28: Peptidase family M28; InterPro: IPR | 98.75 | |
| PF05343 | 292 | Peptidase_M42: M42 glutamyl aminopeptidase; InterP | 98.27 | |
| KOG3946 | 338 | consensus Glutaminyl cyclase [Posttranslational mo | 98.25 | |
| COG2234 | 435 | Iap Predicted aminopeptidases [General function pr | 97.56 | |
| KOG2195 | 702 | consensus Transferrin receptor and related protein | 97.28 | |
| KOG2526 | 555 | consensus Predicted aminopeptidases - M20/M25/M40 | 97.01 | |
| PF05450 | 234 | Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri | 95.74 | |
| PF05343 | 292 | Peptidase_M42: M42 glutamyl aminopeptidase; InterP | 94.46 | |
| PRK02256 | 462 | putative aminopeptidase 1; Provisional | 92.64 | |
| COG4882 | 486 | Predicted aminopeptidase, Iap family [General func | 90.91 | |
| cd00433 | 468 | Peptidase_M17 Cytosol aminopeptidase family, N-ter | 89.77 | |
| PTZ00371 | 465 | aspartyl aminopeptidase; Provisional | 88.91 | |
| PF00883 | 311 | Peptidase_M17: Cytosol aminopeptidase family, cata | 88.03 | |
| PRK02813 | 428 | putative aminopeptidase 2; Provisional | 87.9 | |
| PRK05015 | 424 | aminopeptidase B; Provisional | 86.48 | |
| PRK00913 | 483 | multifunctional aminopeptidase A; Provisional | 81.61 | |
| PRK02256 | 462 | putative aminopeptidase 1; Provisional | 80.14 |
| >TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-61 Score=482.86 Aligned_cols=391 Identities=58% Similarity=1.021 Sum_probs=324.3
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC
Q 013216 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~ 105 (447)
..++++++|++|++|||+++..++.+++++|.++|+++|++++.++...+++|+++.++|+++..|+|+|+|||||||++
T Consensus 7 ~~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~ 86 (400)
T TIGR01880 7 EEDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVF 86 (400)
T ss_pred chHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCC
Confidence 35788999999999999986556789999999999999999887765457889999998765445899999999999998
Q ss_pred CCCCCcCCCceee-CCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccC
Q 013216 106 PSKWSHHPFGAHL-DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (447)
Q Consensus 106 ~~~W~~~Pf~~~~-~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (447)
+..|+++||.+.+ + ||++||||++|||++++++|.|++.|.+.+..++++|.|+|+++||+|+..|++.+++++.+..
T Consensus 87 ~~~W~~~Pf~~~~~~-dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~ 165 (400)
T TIGR01880 87 REHWTHPPFSAFKDE-DGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKA 165 (400)
T ss_pred cccCccCCccceecC-CCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccC
Confidence 7889999999987 5 8999999999999999999999999999888889999999999999976469999998766666
Q ss_pred CceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHHHHhc-cccCC
Q 013216 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG-LKAEG 263 (447)
Q Consensus 185 ~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~-~~~~~ 263 (447)
.++.+++|.|..+|+....++.++||..+++|+++|+++|++.|...||+..++.++..|..+....++.+... ....+
T Consensus 166 ~~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~G~~~Hs~~~~~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 245 (400)
T TIGR01880 166 LNLGFALDEGLASPDDVYRVFYAERVPWWVVVTAPGNPGHGSKLMENTAMEKLEKSVESIRRFRESQFQLLQSNPDLAIG 245 (400)
T ss_pred CceEEEEcCCCcccccccceeEEeeEEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCcccccc
Confidence 67888888776666655689999999999999999999999986545999999999999887654333322211 01112
Q ss_pred CcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCC
Q 013216 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGR 343 (447)
Q Consensus 264 ~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (447)
..+|++++.+++|. ..|+||++|++.+|+|+.|.++.+++.++|+++++....+++++ +.. ....
T Consensus 246 ~~~t~~v~~i~gG~------~~nvIP~~a~~~~diR~~p~~~~~~~~~~i~~~i~~~~~~~~~~---~~~------~~~~ 310 (400)
T TIGR01880 246 DVTSVNLTKLKGGV------QSNVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCADAGEGVTYE---FSQ------HSGK 310 (400)
T ss_pred ccceeecceeccCC------cCCcCCCccEEEEEEeeCCCCCHHHHHHHHHHHHhccCCceEEE---Eee------cCCC
Confidence 24789999999887 88999999999999999999999999999999987533345555 331 2223
Q ss_pred CcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013216 344 PILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 423 (447)
Q Consensus 344 p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~ 423 (447)
|+..+.+.++|+++.+++++++.+... .+..+.|++|+++++..|+|++.|||+......+|++||+++++++.+++++
T Consensus 311 ~~~~~~~~~~~lv~~l~~a~~~~~~~~-~~~~~~g~tDa~~~~~~gip~v~fgp~~~~~~~aH~~dE~i~i~~l~~~~~~ 389 (400)
T TIGR01880 311 PLVTPHDDSNPWWVAFKDAVKEMGCTF-KPEILPGSTDSRYIRAAGVPALGFSPMNNTPVLLHDHNEFLNEAVFLRGIEI 389 (400)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCee-cceeecCcchHHHHHhCCCCeEEECCccCCcccccCCCCceEHHHHHHHHHH
Confidence 333345668999999999999976543 4566789999999999999999999986433468999999999999999999
Q ss_pred HHHHHHHHHh
Q 013216 424 YESIIKAYAS 433 (447)
Q Consensus 424 ~~~~l~~l~~ 433 (447)
|.+++..+..
T Consensus 390 ~~~~l~~~~~ 399 (400)
T TIGR01880 390 YQTLISALAS 399 (400)
T ss_pred HHHHHHHhhc
Confidence 9999998864
|
This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids. |
| >PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-58 Score=456.11 Aligned_cols=371 Identities=22% Similarity=0.324 Sum_probs=307.9
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~ 106 (447)
+++.+++|++|++|||+| ++|.+++++|.++|+++|++++.++..++++|+++++ |.+ .|+|+|+|||||||+++
T Consensus 1 ~~~~~~~l~~Lv~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~-g~~--~~~il~~~H~DtVp~~~ 75 (377)
T PRK08588 1 EEEKIQILADIVKINSVN--DNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEI-GSG--SPVLALSGHMDVVAAGD 75 (377)
T ss_pred ChHHHHHHHHHhcCCCCC--CcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEe-CCC--CceEEEEeeecccCCCC
Confidence 367899999999999986 6899999999999999999988766555778999998 443 38999999999999975
Q ss_pred -CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCC
Q 013216 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (447)
Q Consensus 107 -~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (447)
+.|+++||.+.++ ||++||||++|||++++++|.|++.|.+.+..++++|.|+|++|||+|+ .|++.+++++.+.+.
T Consensus 76 ~~~w~~~Pf~~~~~-~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~-~G~~~~~~~~~~~~~ 153 (377)
T PRK08588 76 VDKWTYDPFELTEK-DGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGE-LGAKQLTEKGYADDL 153 (377)
T ss_pred cccCcCCCCCeEEE-CCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCc-hhHHHHHhcCccCCC
Confidence 7899999999997 9999999999999999999999999999888888999999999999886 699999998766666
Q ss_pred ceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCC
Q 013216 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264 (447)
Q Consensus 186 ~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 264 (447)
|.+++. +|+. ..++.+++|..+++|+++|+++|+|.|+.| |||..+++++..++.+... +... .....
T Consensus 154 d~~i~~-----ep~~-~~i~~~~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~----~~~~-~~~~~ 222 (377)
T PRK08588 154 DALIIG-----EPSG-HGIVYAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDS----IKKH-NPYLG 222 (377)
T ss_pred CEEEEe-----cCCC-ceeEEEEEEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhh----hccc-CccCC
Confidence 766664 4543 568899999999999999999999999999 9999999999998765321 1100 01112
Q ss_pred cceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC--CCCceEeeccccccccccccCC
Q 013216 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFELGQFKQRASLHDKFG 342 (447)
Q Consensus 265 ~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 342 (447)
.++++++.+++|. ..|+||++|++.+|+|+.|.++.+++.++|+++++.. ..+.+++ ++. ...
T Consensus 223 ~~t~~v~~i~gG~------~~nvip~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~---~~~------~~~ 287 (377)
T PRK08588 223 GLTHVVTIINGGE------QVNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQNGAAQLS---LDI------YSN 287 (377)
T ss_pred CCceeeeEEeCCC------cCCcCCCeEEEEEEeccCCCCCHHHHHHHHHHHHHHHhhccCCceE---EEE------ecC
Confidence 4689999999887 8999999999999999999999999999999888632 2233444 331 223
Q ss_pred CCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHH--cCCCeEEEccCCCCCCCCCCCCccccHHHHHHH
Q 013216 343 RPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE--RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKG 420 (447)
Q Consensus 343 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~--~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~ 420 (447)
.|++ ..+.++++++.+++++++..+..+.....+|++|+++|.. .++|++.|||+... ..|++||+++++++.++
T Consensus 288 ~~p~-~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~g~tD~~~~~~~~~~ip~i~~Gpg~~~--~~H~~~E~i~~~~l~~~ 364 (377)
T PRK08588 288 HRPV-ASDKDSKLVQLAKDVAKSYVGQDIPLSAIPGATDASSFLKKKPDFPVIIFGPGNNL--TAHQVDEYVEKDMYLKF 364 (377)
T ss_pred CCCc-CCCCCCHHHHHHHHHHHHhhCCCCceecCCCcccHHHHhhhcCCCCEEEECCCCCc--cCCCCCceeEHHHHHHH
Confidence 3443 3456899999999999997554334455678999999875 37899999998432 69999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 013216 421 IDIYESIIKAYAS 433 (447)
Q Consensus 421 ~~~~~~~l~~l~~ 433 (447)
+++|..++..+++
T Consensus 365 ~~~~~~~~~~~~~ 377 (377)
T PRK08588 365 IDIYKEIIIQYLK 377 (377)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988754
|
|
| >PRK06915 acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-58 Score=466.26 Aligned_cols=384 Identities=21% Similarity=0.322 Sum_probs=310.5
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec-----------------CCCCeEEEEec
Q 013216 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA-----------------KNKPLILLKWP 84 (447)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~-----------------~~~~nl~~~~~ 84 (447)
..+.+.+++++++++|++|||+| ++|.+++++|.++|+++|++++.++.. .+++||++.++
T Consensus 11 ~~~~~~~~~~~~l~~lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nlia~~~ 88 (422)
T PRK06915 11 YIESHEEEAVKLLKRLIQEKSVS--GDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPNIVATLK 88 (422)
T ss_pred HHHhhHHHHHHHHHHHHhCCCCC--cchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCceEEEEEc
Confidence 34667789999999999999995 789999999999999999998755321 25789999998
Q ss_pred CCCCCCCeEEEeeccccCCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeec
Q 013216 85 GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVP 163 (447)
Q Consensus 85 g~~~~~~~ill~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 163 (447)
|.++ .|+|+|+|||||||+++ +.|+++||.++++ ||++||||++|||++++++|.|++.|.+.+.+++++|.|+|++
T Consensus 89 g~~~-~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~-~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~~~~~~ 166 (422)
T PRK06915 89 GSGG-GKSMILNGHIDVVPEGDVNQWDHHPYSGEVI-GGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIFQSVI 166 (422)
T ss_pred CCCC-CCeEEEEeeccccCCCCcccCcCCCCCceEE-CCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 7654 48999999999999986 7899999999997 9999999999999999999999999999887888999999999
Q ss_pred CcccCcccCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHH
Q 013216 164 DEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIE 242 (447)
Q Consensus 164 ~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~ 242 (447)
+||+|+ .|+..++.++. +.|.+++. +|+. ..++.+++|..+++|+++|+++|+|.|+.| ||+..+++++.
T Consensus 167 dEE~g~-~G~~~~~~~~~--~~d~~i~~-----ep~~-~~i~~~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~~~~~~~ 237 (422)
T PRK06915 167 EEESGG-AGTLAAILRGY--KADGAIIP-----EPTN-MKFFPKQQGSMWFRLHVKGKAAHGGTRYEGVSAIEKSMFVID 237 (422)
T ss_pred ccccCC-cchHHHHhcCc--CCCEEEEC-----CCCC-ccceeecccEEEEEEEEEeeccccCCCCcCcCHHHHHHHHHH
Confidence 999886 58888877643 35666653 4654 568899999999999999999999999999 99999999999
Q ss_pred HHHhchhhhHHHHHhc-cccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCC
Q 013216 243 SVRRFRASQFDLVKAG-LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321 (447)
Q Consensus 243 ~l~~~~~~~~~~~~~~-~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~ 321 (447)
.|+.+........... .......++++++.+++|. ..|+||+.|++.+|+|+.|.++.+++.++|++.++...
T Consensus 238 ~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~------~~nvvP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~~~~ 311 (422)
T PRK06915 238 HLRKLEEKRNDRITDPLYKGIPIPIPINIGKIEGGS------WPSSVPDSVILEGRCGIAPNETIEAAKEEFENWIAELN 311 (422)
T ss_pred HHHHHHHHhccccCCCcccCCCCCceEeEEEeeCCC------CCCccCcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 9987653110000000 0001123589999999887 88999999999999999999999999999998876322
Q ss_pred CC------ceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHc-CCCeEE
Q 013216 322 RN------MTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER-GLPAIG 394 (447)
Q Consensus 322 ~~------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~-g~p~~~ 394 (447)
.. ..++ ++.. .....|. .++.++++++.++++++++.+..+.....+|++|+++|.+. |+|++.
T Consensus 312 ~~~~~~~~~~~~---v~~~----~~~~~~~--~~~~d~~lv~~l~~a~~~~~G~~~~~~~~~g~tD~~~~~~~~giP~v~ 382 (422)
T PRK06915 312 DVDEWFVEHPVE---VEWF----GARWVPG--ELEENHPLMTTLEHNFVEIEGNKPIIEASPWGTDGGLLTQIAGVPTIV 382 (422)
T ss_pred ccChhhhcCCce---EEee----cccCCcc--cCCCCCHHHHHHHHHHHHHhCCCCeeceeeeeccHHHHhccCCCCEEE
Confidence 11 1123 2210 0112233 46678999999999999985544344566789999999988 899999
Q ss_pred EccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhhc
Q 013216 395 FSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYV 435 (447)
Q Consensus 395 ~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~~ 435 (447)
|||+... .+|++||+++++++.+++++|+.++..+++..
T Consensus 383 fGpg~~~--~aH~~dE~v~~~~l~~~~~~~~~ll~~~~~~~ 421 (422)
T PRK06915 383 FGPGETK--VAHYPNEYIEVDKMIAAAKIIALTLLDWCEVK 421 (422)
T ss_pred ECCCCcc--ccCCCCceeEHHHHHHHHHHHHHHHHHHhCCC
Confidence 9998654 69999999999999999999999999998754
|
|
| >KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-58 Score=431.99 Aligned_cols=404 Identities=49% Similarity=0.815 Sum_probs=354.9
Q ss_pred HHhhhcCCCCC-hhHHHHHHHhhhcccCCCCCCChh-HHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeE
Q 013216 16 QLIIFSSPAKS-DDSIIERFRAYLQIDTSQPNPDYT-NASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93 (447)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~l~~l~~ips~s~~~~e~-~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i 93 (447)
...+...+... +...+..++++++|||+-|.++.. .+++++..+.+.+|+.++.++..++.++++.+++|++|..++|
T Consensus 12 l~~~~~~a~~~e~~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~si 91 (420)
T KOG2275|consen 12 LRSGSVSAGPHEENISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSI 91 (420)
T ss_pred hhcCCCCCCccccchHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccce
Confidence 33344444443 467899999999999997777776 9999999999999999998888788999999999999999999
Q ss_pred EEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCH
Q 013216 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (447)
Q Consensus 94 ll~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (447)
+|++|+||||+..+.|+++||++..+++|.|||||++|||+..++.|+|++.|+..|.+++++|.+.|.+|||.|+..|+
T Consensus 92 lL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm 171 (420)
T KOG2275|consen 92 LLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGM 171 (420)
T ss_pred eeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchH
Confidence 99999999999989999999999986699999999999999999999999999999999999999999999999877899
Q ss_pred HHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHH
Q 013216 174 EKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFD 253 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~ 253 (447)
+.+.+..++.+..+++++|+|+..+.....+.+++||..+++|++.|.+||+|.|....++..+.+++..+.+++..+++
T Consensus 172 ~~fa~~~~~~~l~~~filDEG~~se~d~~~vfyaEkg~w~~~v~~~G~~GHss~~~~nTa~~~l~klv~~~~~fr~~q~~ 251 (420)
T KOG2275|consen 172 KEFAKTEEFKKLNLGFILDEGGATENDFATVFYAEKGPWWLKVTANGTPGHSSYPPPNTAIEKLEKLVESLEEFREKQVD 251 (420)
T ss_pred HHHhhhhhhcccceeEEecCCCCCcccceeEEEEeeceeEEEEEecCCCCCCCCCCCccHHHHHHHHHHHHHHhHHHHHH
Confidence 99988667777788999999977676656889999999999999999999999987779999999999999999877777
Q ss_pred HHHhc-cccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHH-HHHhccCCCCceEeeccc
Q 013216 254 LVKAG-LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRI-VEEWAPASRNMTFELGQF 331 (447)
Q Consensus 254 ~~~~~-~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i-~~~~~~~~~~~~~~~~~~ 331 (447)
.+.+. ....+..+|++++.++||. +.|++|+.+++.+|+|..+..+.+++.+++ .+..++...++.++ +
T Consensus 252 ~l~~~p~~~~~~vtT~Nv~~i~GGv------~~N~~P~~~ea~~dirv~~~~d~~~i~~~l~~~w~~~~~eg~t~~---f 322 (420)
T KOG2275|consen 252 LLASGPKLALGDVTTINVGIINGGV------QSNVLPETFEAAFDIRVRPHVDVKAIRDQLEDEWAEEAGEGVTLE---F 322 (420)
T ss_pred HhhcCCceeccceeEEeeeeeeccc------ccCcCchhheeeeeeEeccCCCHHHHHHHHHHHhhhhcCCceEEe---c
Confidence 66544 3455678999999999998 999999999999999999999999999999 55665555667777 6
Q ss_pred cccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCcc
Q 013216 332 KQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEF 411 (447)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~ 411 (447)
.+.. ...++..++.+.+.|++..+..++++.+++. .+..++|++|.+++++.|+|++.|.|+.+.+-..|..||+
T Consensus 323 ~~~~----~~~~~~~t~~~~s~p~w~~~~~a~~~~~~k~-~~~i~~gstdsr~~rn~gvp~~~fsp~~nt~~~~H~hnE~ 397 (420)
T KOG2275|consen 323 SQKV----ILDYPPVTPTDDSNPFWTAFAGALKDEGGKG-YPEIGPGSTDSRHIRNEGVPAIGFSPIINTPMLLHDHNEF 397 (420)
T ss_pred cCcc----cCCCCCCCCCCCCChHHHHHHHHHHHhcCcc-ceeecccccccchhhhcCcchhcccccccccceecchhhh
Confidence 5421 1155556677888999999999999998876 6778899999999999999999999998877789999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHh
Q 013216 412 LNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 412 v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
+....+.+++++|..++..++.
T Consensus 398 l~~~~~l~gi~~~~~~i~~~~~ 419 (420)
T KOG2275|consen 398 LNEKVFLRGIEIYYTIIVNLAN 419 (420)
T ss_pred hCchhhhhhhhHHHHHHHhhcC
Confidence 9999999999999998877653
|
|
| >PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-58 Score=462.98 Aligned_cols=392 Identities=19% Similarity=0.300 Sum_probs=310.0
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCC-ChhHHHHHHHHHHHHCCCceEEEeecC--------CCCeEEEEecCCCCCCCeE
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAK--------NKPLILLKWPGSNPQLPSI 93 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s~~~-~e~~~~~~i~~~l~~~G~~~~~~~~~~--------~~~nl~~~~~g~~~~~~~i 93 (447)
.+.+.++++++|++|++|||+++.+ +|.+++++|.++|+++|++++.++..+ +++|++++++|..+ .|+|
T Consensus 9 ~~~~~~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~-~~~i 87 (427)
T PRK13013 9 IEARRDDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGARD-GDCV 87 (427)
T ss_pred HHHhHHHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCCC-CCEE
Confidence 4556789999999999999998654 567999999999999999988664321 25799999977543 4889
Q ss_pred EEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCH
Q 013216 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (447)
Q Consensus 94 ll~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (447)
+|+||+||||++ +.|+++||++.++ ||+|||||++|||++++++|.|++.|++.+.+++++|.|+|+++||+|+..|.
T Consensus 88 ~l~gH~DvVp~~-~~W~~~Pf~~~~~-dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~ 165 (427)
T PRK13013 88 HFNSHHDVVEVG-HGWTRDPFGGEVK-DGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEESGGFGGV 165 (427)
T ss_pred EEEeccccCCCC-CCCcCCCCCceEE-CCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCChhHH
Confidence 999999999986 6799999999997 99999999999999999999999999998877889999999999999875688
Q ss_pred HHHHcccccc--CCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhh
Q 013216 174 EKFADSHVFN--SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRAS 250 (447)
Q Consensus 174 ~~~~~~~~~~--~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~ 250 (447)
.++++++.++ +.|++++. +|+....+..+++|..+++|+++|+++|++.|+.| ||+..++++|..|+.+...
T Consensus 166 ~~l~~~~~~~~~~~d~~i~~-----ep~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l~~~~~~ 240 (427)
T PRK13013 166 AYLAEQGRFSPDRVQHVIIP-----EPLNKDRICLGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEIEERLFP 240 (427)
T ss_pred HHHHhcCCccccCCCEEEEe-----cCCCCCceEEeeeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHHHHHHHhhh
Confidence 8888776555 45766665 45543468899999999999999999999999999 9999999999999753211
Q ss_pred hHHHHHhccc---cCCCcceeeeeeeecCCCCC----CCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC---
Q 013216 251 QFDLVKAGLK---AEGEVVSVNMAFLKAGTPSP----NGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--- 320 (447)
Q Consensus 251 ~~~~~~~~~~---~~~~~~t~~~~~i~~g~~~~----~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--- 320 (447)
..+....... .....++++++.|++|.... +....|+||++|++.+|+|+.|.++.+++.++|+++++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~~~~~~~~~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~~~i~~~~~~ 320 (427)
T PRK13013 241 LLATRRTAMPVVPEGARQSTLNINSIHGGEPEQDPDYTGLPAPCVADRCRIVIDRRFLIEEDLDEVKAEITALLERLKRA 320 (427)
T ss_pred hhhcccccCCCCCcccCCCceeeeEEeCCCccccccccccccccCCceEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1100000000 00124689999999986321 0112399999999999999999999999999998887631
Q ss_pred CCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcC-C-CeEEEccC
Q 013216 321 SRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERG-L-PAIGFSPM 398 (447)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g-~-p~~~~gp~ 398 (447)
..+++++ ++. ....|++ ..+.++++++.+.+++++..+..+....++|++|++++.+.| + |++.|||+
T Consensus 321 ~~~~~~~---~~~------~~~~~p~-~~~~~~~lv~~l~~a~~~~~g~~~~~~~~~g~~D~~~~~~~g~~~~~v~fGPg 390 (427)
T PRK13013 321 RPGFAYE---IRD------LFEVLPT-MTDRDAPVVRSVAAAIERVLGRQADYVVSPGTYDQKHIDRIGKLKNCIAYGPG 390 (427)
T ss_pred CCCceeE---EEE------cccCCcc-cCCCCCHHHHHHHHHHHHhhCCCCceeecCccCCHHHHHhcCCCCCEEEECCC
Confidence 2344455 331 1233333 356678999999999998655443455667889999999987 4 69999998
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhh
Q 013216 399 ANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 399 ~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
... .+|++|||++++++.+++++|+.++..+++.
T Consensus 391 ~~~--~aH~~nE~v~i~~l~~~~~~l~~~l~~~~~~ 424 (427)
T PRK13013 391 ILD--LAHQPDEWVGIADMVDSAKVMALVLADLLAG 424 (427)
T ss_pred Ccc--ccCCCCceeEHHHHHHHHHHHHHHHHHHhcc
Confidence 653 6999999999999999999999999998753
|
|
| >PRK06837 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=451.28 Aligned_cols=381 Identities=19% Similarity=0.271 Sum_probs=309.1
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec-----------------CCCCeEEEEec
Q 013216 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA-----------------KNKPLILLKWP 84 (447)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~-----------------~~~~nl~~~~~ 84 (447)
..+.+.++++++|++|++|||+| ++|.+++++|.++|+++|++++.++.. ++++||++.++
T Consensus 14 ~i~~~~~~~~~~l~~li~ipS~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~ 91 (427)
T PRK06837 14 AVDAGFDAQVAFTQDLVRFPSTR--GAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAPNVVGTYR 91 (427)
T ss_pred HHHhhhHHHHHHHHHHhccCCCC--CcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCceEEEEec
Confidence 34557789999999999999996 688999999999999999998764321 36789999998
Q ss_pred CCCCCCCeEEEeeccccCCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeec
Q 013216 85 GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVP 163 (447)
Q Consensus 85 g~~~~~~~ill~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 163 (447)
|.+++.|+|+|+|||||||+++ +.|+++||+++++ +|+|||||++|||++++++|.|++.|++.+..++++|.|+|++
T Consensus 92 g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~-~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~i~~~~~~ 170 (427)
T PRK06837 92 PAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIV-DGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAARVHFQSVI 170 (427)
T ss_pred CCCCCCCeEEEEeecccCCCCCccccccCCCCcEEE-CCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEEEe
Confidence 7655568999999999999986 7899999999997 9999999999999999999999999999888888999999999
Q ss_pred CcccCcccCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHH
Q 013216 164 DEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIE 242 (447)
Q Consensus 164 ~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~ 242 (447)
+||.++ .|+..++..+. ..|.+++. +|+. ..++++++|..+++|+++|+++|+|.|+.| ||+..+++++.
T Consensus 171 dEE~~g-~g~~~~~~~~~--~~d~~iv~-----ep~~-~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~ 241 (427)
T PRK06837 171 EEESTG-NGALSTLQRGY--RADACLIP-----EPTG-EKLVRAQVGVIWFRLRVRGAPVHVREAGTGANAIDAAYHLIQ 241 (427)
T ss_pred ccccCC-HhHHHHHhcCc--CCCEEEEc-----CCCC-CccccccceeEEEEEEEEeeccccCCcccCcCHHHHHHHHHH
Confidence 999876 48877776543 25666654 4554 578899999999999999999999999999 99999999999
Q ss_pred HHHhchhhhHHHH-Hhc-cccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC
Q 013216 243 SVRRFRASQFDLV-KAG-LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA 320 (447)
Q Consensus 243 ~l~~~~~~~~~~~-~~~-~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~ 320 (447)
.|+.+........ ... .......++++++.+++|. ..|+||+.|++.+++|+.|.++.+++.++|++.++..
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG~------~~nvVP~~~~~~~~ir~~p~~~~~~v~~~i~~~~~~~ 315 (427)
T PRK06837 242 ALRELEAEWNARKASDPHFEDVPHPINFNVGIIKGGD------WASSVPAWCDLDCRIAIYPGVTAADAQAEIEACLAAA 315 (427)
T ss_pred HHHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCCC------CCCccCCEEEEEEEEeECCCCCHHHHHHHHHHHHHHH
Confidence 9987643211000 000 0011123588999999886 8899999999999999999999999999998887632
Q ss_pred CCC--------ceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHH-cCCC
Q 013216 321 SRN--------MTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE-RGLP 391 (447)
Q Consensus 321 ~~~--------~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~-~g~p 391 (447)
... .+++ +. ....+++ .++.++|+++.+.+++++..+..+.+..++|++|++++.+ .|+|
T Consensus 316 ~~~~~~~~~~~~~~~---~~-------~~~~~p~-~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~g~tDa~~~~~~~gip 384 (427)
T PRK06837 316 ARDDRFLSNNPPEVV---WS-------GFLAEGY-VLEPGSEAEAALARAHAAVFGGPLRSFVTTAYTDTRFYGLYYGIP 384 (427)
T ss_pred HhcChhhhhCCCeEE---EE-------ecccCCc-CCCCCCHHHHHHHHHHHHHhCCCCeeeEEeeccchHHHhccCCCC
Confidence 111 1222 11 1123333 5677899999999999986544435567789999999985 7999
Q ss_pred eEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhh
Q 013216 392 AIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 392 ~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
++.|||+.. .+|++||+++++++.+++++|+.++..++..
T Consensus 385 ~v~~Gp~~~---~~H~~nE~i~i~~l~~~~~~~~~~l~~~~~~ 424 (427)
T PRK06837 385 ALCYGPSGE---GIHGFDERVDLESVRKVTKTIALFVAEWCGV 424 (427)
T ss_pred EEEECCCCC---ccCCCCceEEHHHHHHHHHHHHHHHHHHhCC
Confidence 999999864 5999999999999999999999999988743
|
|
| >PRK13983 diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-56 Score=446.45 Aligned_cols=380 Identities=21% Similarity=0.308 Sum_probs=306.3
Q ss_pred CChhHHHHHHHhhhcccCCCCC---CChhHHHHHHHHHHHHCCCc-eEEEeecC----C--CCeEEEEecCCCCCCCeEE
Q 013216 25 KSDDSIIERFRAYLQIDTSQPN---PDYTNASKFILAQAEALSLE-SQTLEFAK----N--KPLILLKWPGSNPQLPSIL 94 (447)
Q Consensus 25 ~~~~~~~~~l~~l~~ips~s~~---~~e~~~~~~i~~~l~~~G~~-~~~~~~~~----~--~~nl~~~~~g~~~~~~~il 94 (447)
...++++++|++|++|||+|+. .+|.+++++|.++|+++|++ ++.++..+ + ++|+++.++|..+ .++|+
T Consensus 2 ~~~~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~-~~~ll 80 (400)
T PRK13983 2 ELRDEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDG-KRTLW 80 (400)
T ss_pred chHHHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCC-CCeEE
Confidence 3457899999999999999853 35889999999999999998 77654321 1 6899999987543 37999
Q ss_pred EeeccccCCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCH
Q 013216 95 LNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (447)
Q Consensus 95 l~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (447)
|+|||||||+++ +.|+.+||.+.++ +|+|||||++|||++++++|.|++.|.+.+.+++++|.|+|+++||.|+..|+
T Consensus 81 l~~H~Dtvp~~~~~~W~~~p~~~~~~-~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~ 159 (400)
T PRK13983 81 IISHMDVVPPGDLSLWETDPFKPVVK-DGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGI 159 (400)
T ss_pred EEeeccccCCCCcccccCCCCcceee-CCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccH
Confidence 999999999976 7899999999997 99999999999999999999999999998888899999999999998864599
Q ss_pred HHHHcc--ccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHh-chh
Q 013216 174 EKFADS--HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRR-FRA 249 (447)
Q Consensus 174 ~~~~~~--~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~-~~~ 249 (447)
+++++. +.+.+.|++++.+.| .|++ ..++.+++|..+++|+++|+++|+|.|+.| ||+..+++++..+.. +..
T Consensus 160 ~~~~~~~~~~~~~~d~~i~~~~~--~~~~-~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 236 (400)
T PRK13983 160 QYLLKKHPELFKKDDLILVPDAG--NPDG-SFIEIAEKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHE 236 (400)
T ss_pred HHHHhhcccccCCCCEEEEecCC--CCCC-ceeEEeecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999976 445556878877644 4554 357889999999999999999999999999 999999999999876 322
Q ss_pred hhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCC--CCceEe
Q 013216 250 SQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS--RNMTFE 327 (447)
Q Consensus 250 ~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~--~~~~~~ 327 (447)
. +... .. .......+++++.+.+|. ...|+||++|++.+|+|++|.++.+++.++|+++++... .+.+++
T Consensus 237 ~-~~~~-~~-~~~~~~~~~~~~~~~~g~-----~~~nvvp~~~~~~~diR~~p~~~~~~v~~~l~~~~~~~~~~~~~~v~ 308 (400)
T PRK13983 237 K-FNAK-DP-LFDPPYSTFEPTKKEANV-----DNINTIPGRDVFYFDCRVLPDYDLDEVLKDIKEIADEFEEEYGVKIE 308 (400)
T ss_pred h-hccc-cc-ccCCCCcccccceeecCC-----cCCcccCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhccccCccee
Confidence 1 1100 00 000112356666666552 278999999999999999999999999999998887422 233444
Q ss_pred eccccccccccccC-CCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCC
Q 013216 328 LGQFKQRASLHDKF-GRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLH 406 (447)
Q Consensus 328 ~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H 406 (447)
+.. .. ..|++ .++.++++++.+.+++++..+..+.+..++|++|++++...|+|++.|||+.. .+|
T Consensus 309 ---~~~------~~~~~~~~-~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~g~td~~~~~~~gip~v~~Gp~~~---~~H 375 (400)
T PRK13983 309 ---VEI------VQREQAPP-PTPPDSEIVKKLKRAIKEVRGIEPKVGGIGGGTVAAFLRKKGYPAVVWSTLDE---TAH 375 (400)
T ss_pred ---EEE------eeccCCcc-CCCCCcHHHHHHHHHHHHhcCCCceeeeecCcHHHHHHHHcCCCEEEeCCccc---cCC
Confidence 331 11 23332 46778999999999999976654466667889999999989999999999864 599
Q ss_pred CCCccccHHHHHHHHHHHHHHHHH
Q 013216 407 DHNEFLNQAEYLKGIDIYESIIKA 430 (447)
Q Consensus 407 ~~~E~v~~~~l~~~~~~~~~~l~~ 430 (447)
++||+++++++.+++++|..++..
T Consensus 376 ~~nE~v~i~~l~~~~~~~~~~~~~ 399 (400)
T PRK13983 376 QPNEYAKISNLIEDAKVFALLLLE 399 (400)
T ss_pred CCCceeeHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998753
|
|
| >PRK08596 acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=448.88 Aligned_cols=388 Identities=20% Similarity=0.276 Sum_probs=310.7
Q ss_pred CCChhHHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCC-CCeEEEeecccc
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQ-LPSILLNSHTDV 101 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~-~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~-~~~ill~~H~Dt 101 (447)
+...++++++|++|++|||+|+. .+|.+++++|.++|+++|++++.++..++++|+++.++|+++. .|+|+|+|||||
T Consensus 9 ~~~~~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~lll~~H~Dt 88 (421)
T PRK08596 9 ELRKDELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLIINGHMDV 88 (421)
T ss_pred HhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEEEeccccc
Confidence 34568899999999999999864 3688999999999999999998776555788999999876432 367999999999
Q ss_pred CCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccc
Q 013216 102 VPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (447)
Q Consensus 102 vp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (447)
||+++ +.|+.+||.+.++ ||+|||||++|||++++++|.|++.|.+.+..++++|.|+|+++||+|+ .|++++++++
T Consensus 89 Vp~~~~~~W~~~Pf~~~~~-~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~-~G~~~~~~~~ 166 (421)
T PRK08596 89 AEVSADEAWETNPFEPTIK-DGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGE-AGTLQCCERG 166 (421)
T ss_pred cCCCCccccccCCCCcEEE-CCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCC-cCHHHHHhcC
Confidence 99987 6799999999997 9999999999999999999999999999988889999999999999986 6999999875
Q ss_pred cccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeec----------CCccCCCCCC-CHHHHHHHHHHHHHhchh
Q 013216 181 VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGA----------PGHGAKLYDN-SAMENLFKSIESVRRFRA 249 (447)
Q Consensus 181 ~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~----------~~Hs~~p~~g-nai~~~~~~i~~l~~~~~ 249 (447)
. ..|++++.+ |+. . .+.+++|...+.++++|. .+|++.|+.| ||+..++++|..|+.+..
T Consensus 167 ~--~~d~~i~~e-----p~~-~-~~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~~ 237 (421)
T PRK08596 167 Y--DADFAVVVD-----TSD-L-HMQGQGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELER 237 (421)
T ss_pred C--CCCEEEECC-----CCC-C-ccccccceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHHHHHHHHH
Confidence 3 257788875 443 2 247889988888888875 3699999988 999999999999987643
Q ss_pred hhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCC-------
Q 013216 250 SQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASR------- 322 (447)
Q Consensus 250 ~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~------- 322 (447)
. +.............++++++.|++|. ..|+||++|++.+|+|+.|+++.+++.++|+++++....
T Consensus 238 ~-~~~~~~~~~~~~~~~t~~v~~i~gG~------~~nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~ 310 (421)
T PRK08596 238 H-WAVMKSYPGFPPGTNTINPAVIEGGR------HAAFIADECRLWITVHFYPNETYEQVIKEIEEYIGKVAAADPWLRE 310 (421)
T ss_pred H-HhhcccCccCCCCCcceeeeeeeCCC------CCCccCceEEEEEEeeeCCCCCHHHHHHHHHHHHHHHHhcChhhhh
Confidence 2 11100000001123688999999887 899999999999999999999999999999988763211
Q ss_pred -CceEeecccccccccc-ccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCC
Q 013216 323 -NMTFELGQFKQRASLH-DKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMAN 400 (447)
Q Consensus 323 -~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~ 400 (447)
...++ +.....+. .....|++ .++.++|+++++.+++++..+..+.+...+|++|++++..+|+|++.|||+..
T Consensus 311 ~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~g~tD~~~~~~~gip~v~~Gpg~~ 386 (421)
T PRK08596 311 NPPQFK---WGGESMIEDRGEIFPSL-EIDSEHPAVKTLSSAHESVLSKNAILDMSTTVTDGGWFAEFGIPAVIYGPGTL 386 (421)
T ss_pred CCceeE---EecccccccccccCCCc-cCCCCchHHHHHHHHHHHHhCCCCeeeEEeeecchhhhhhcCCCEEEECCCcc
Confidence 11222 10000000 01234544 56778999999999999986655455566789999999999999999999864
Q ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhhc
Q 013216 401 TPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYV 435 (447)
Q Consensus 401 ~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~~ 435 (447)
. .+|++||+++++++.+++++|..++..+++.+
T Consensus 387 ~--~~H~~~E~v~i~~~~~~~~~~~~~l~~~~~~~ 419 (421)
T PRK08596 387 E--EAHSVNEKVEIEQLIEYTKVITAFIYEWCHTK 419 (421)
T ss_pred c--ccCCCCceEEHHHHHHHHHHHHHHHHHHhCCC
Confidence 3 69999999999999999999999999998765
|
|
| >PRK09133 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-56 Score=453.00 Aligned_cols=384 Identities=21% Similarity=0.322 Sum_probs=305.9
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEee---cCCCCeEEEEecCCCCCCCeEEEeeccc
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF---AKNKPLILLKWPGSNPQLPSILLNSHTD 100 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~---~~~~~nl~~~~~g~~~~~~~ill~~H~D 100 (447)
+.+.++++++|++|++|||+++.++|.++++||.++|+++|++++.++. .++++||++.++|+++ .++|+|+||||
T Consensus 33 ~~~~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~-~~~lll~~H~D 111 (472)
T PRK09133 33 TADQQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDP-KKPILLLAHMD 111 (472)
T ss_pred chhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCC-CCcEEEEeecc
Confidence 3477889999999999999987678899999999999999998754432 2367899999987654 37899999999
Q ss_pred cCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcc-cCcccCHHHHHcc
Q 013216 101 VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE-IGGHDGAEKFADS 179 (447)
Q Consensus 101 tvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE-~g~~~G~~~~~~~ 179 (447)
|||+++++|+++||+++++ ||+|||||++|||++++++|.|++.|.+.+..++++|.|+|+++|| +|+ .|++.++++
T Consensus 112 tVp~~~~~W~~dPf~~~~~-dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~-~G~~~l~~~ 189 (472)
T PRK09133 112 VVEAKREDWTRDPFKLVEE-NGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPM-NGVAWLAEN 189 (472)
T ss_pred cCCCChhcCCCCCCcceEe-CCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCcc-chHHHHHHH
Confidence 9999877899999999997 9999999999999999999999999999887888999999999999 564 799999876
Q ss_pred cc-ccCCceEEEEecCC------cCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhh--
Q 013216 180 HV-FNSLNVGIVLDEGL------ASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRAS-- 250 (447)
Q Consensus 180 ~~-~~~~~~~~~~d~g~------~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~-- 250 (447)
.. .-..+++++ +.+. .+|+. ..++.++||..+++|+++|+++|+|.|+..|||..++++|..|..+...
T Consensus 190 ~~~~~~~~~~i~-e~~~~~~~~~gept~-~~i~~g~kG~~~~~i~v~G~~~Hss~p~~~nAi~~l~~~l~~l~~~~~~~~ 267 (472)
T PRK09133 190 HRDLIDAEFALN-EGGGGTLDEDGKPVL-LTVQAGEKTYADFRLEVTNPGGHSSRPTKDNAIYRLAAALSRLAAYRFPVM 267 (472)
T ss_pred HhhccCeEEEEE-CCCccccCCCCCceE-EEeeeecceeEEEEEEEecCCCCCCCCCCCChHHHHHHHHHHHhhCCCCCc
Confidence 43 113466666 5433 23443 4577899999999999999999999987559999999999999764210
Q ss_pred -------hHHHH---------------H-------------h-ccccCCCcceeeeeeeecCCCCCCCccccccCCceEE
Q 013216 251 -------QFDLV---------------K-------------A-GLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEA 294 (447)
Q Consensus 251 -------~~~~~---------------~-------------~-~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~ 294 (447)
.++.+ . . ........+|++++.+++|. ..|+||++|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gG~------~~NvVP~~a~~ 341 (472)
T PRK09133 268 LNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLEGGH------AENALPQRATA 341 (472)
T ss_pred cCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEecCC------cCccCCCceEE
Confidence 00000 0 0 00000124688999999886 89999999999
Q ss_pred EEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhc-CCCCCc
Q 013216 295 GFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKAN-GKLGKP 373 (447)
Q Consensus 295 ~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~ 373 (447)
.+|+|+.|.++.+++.++|+++++. .+++++ +. ....+. .+.+.+.++++.++++.++.+ +....+
T Consensus 342 ~lDiR~~p~~~~e~v~~~I~~~i~~--~~v~v~---~~-------~~~~~~-~~~~~~~~l~~~l~~~~~~~~~g~~~~~ 408 (472)
T PRK09133 342 NVNCRIFPGDTIEAVRATLKQVVAD--PAIKIT---RI-------GDPSPS-PASPLRPDIMKAVEKLTAAMWPGVPVIP 408 (472)
T ss_pred EEEEEeCCchhHHHHHHHHHHHhcC--CCEEEE---Ec-------cCCCCC-CCCCCCcHHHHHHHHHHHHHCCCCceec
Confidence 9999999999999999999988863 334444 21 111222 245567899999999999874 433244
Q ss_pred eecCCCcchHHHHHcCCCeEE----EccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 374 EIFPASTDARYFRERGLPAIG----FSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 374 ~~~~g~~D~~~~~~~g~p~~~----~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
..++|+||++++...|+|++. |||+... ..|++|||++++++.+++++|..++..+++
T Consensus 409 ~~~~ggtDa~~~~~~gip~~~~~~i~gp~~~~--~aH~~dE~v~i~~l~~~~~~l~~~l~~l~~ 470 (472)
T PRK09133 409 SMSTGATDGRYLRAAGIPTYGVSGLFGDPDDT--FAHGLNERIPVASFYEGRDFLYELVKDLAG 470 (472)
T ss_pred cccccccchHHHHhcCCCceeecCcccCcccc--cCCCCCCceeHHHHHHHHHHHHHHHHHhhc
Confidence 567799999999999999984 6666543 689999999999999999999999988754
|
|
| >PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=437.61 Aligned_cols=369 Identities=21% Similarity=0.306 Sum_probs=298.3
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC-
Q 013216 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP- 106 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~- 106 (447)
.++++++++|++|||.| ++|.+++++|.++|+++|++++.++. ++++|+++.+ |. ++|+|+|+||+||||+++
T Consensus 2 ~~~~~~l~~Lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~~~-~~~~n~~~~~-g~--~~~~i~l~~H~D~Vp~g~~ 75 (375)
T PRK13009 2 SDVLELAQDLIRRPSVT--PDDAGCQDLLAERLEALGFTCERMDF-GDVKNLWARR-GT--EGPHLCFAGHTDVVPPGDL 75 (375)
T ss_pred chHHHHHHHHhCCCCCC--CchhhHHHHHHHHHHHcCCeEEEecc-CCCcEEEEEe-cC--CCCEEEEEeecccCCCCCc
Confidence 36789999999999996 67889999999999999999886654 3678999987 54 358999999999999976
Q ss_pred CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccc--cC
Q 013216 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF--NS 184 (447)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~--~~ 184 (447)
+.|+++||.++++ ||++||||++|||++++++|.|++.|++.+..++++|+|+|+++||.++..|++.+++.... ..
T Consensus 76 ~~w~~~Pf~~~~~-~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~ 154 (375)
T PRK13009 76 EAWTSPPFEPTIR-DGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEK 154 (375)
T ss_pred ccCCCCCCCcEEE-CCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcC
Confidence 7999999999997 99999999999999999999999999998877889999999999998655699988764221 13
Q ss_pred CceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCC
Q 013216 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263 (447)
Q Consensus 185 ~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 263 (447)
.|++++.+.....+. ...++.+++|..+++|+++|+++|++.|+.| ||+..+++++..|..+.... . ....
T Consensus 155 ~d~~i~~ep~~~~~~-~~~i~~g~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~------~-~~~~ 226 (375)
T PRK13009 155 IDYCIVGEPTSTERL-GDVIKNGRRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDE------G-NEFF 226 (375)
T ss_pred CCEEEEcCCCcccCC-CCeEEEecceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccC------C-CccC
Confidence 566666542111111 1247889999999999999999999999988 99999999999987643210 0 0011
Q ss_pred CcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCC
Q 013216 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGR 343 (447)
Q Consensus 264 ~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (447)
..++++++.|++|.. ..|+||++|++.+|+|++|.++.+++.++|++.++.. +.+++ ++. .....
T Consensus 227 ~~~~~~i~~i~~G~~-----~~nvip~~~~~~~diR~~~~~~~e~i~~~i~~~~~~~--~~~~~---~~~-----~~~~~ 291 (375)
T PRK13009 227 PPTSLQITNIDAGTG-----ATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDKH--GLDYT---LEW-----TLSGE 291 (375)
T ss_pred CCceEEEEEEecCCC-----CCcccCCcEEEEEEEecCCCCCHHHHHHHHHHHHHhc--CCCeE---EEE-----ecCCC
Confidence 235788999987742 6799999999999999999999999999999888632 33444 331 01234
Q ss_pred CcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013216 344 PILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 423 (447)
Q Consensus 344 p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~ 423 (447)
|.. .+ ++++++.+.+++++..+..+.+...+|++|++++.+.|+|++.|||+.. ..|++||+++++++.+++++
T Consensus 292 p~~--~~-~~~~~~~l~~a~~~~~g~~~~~~~~~g~tda~~~~~~g~p~v~~Gp~~~---~~H~~~E~i~~~~l~~~~~~ 365 (375)
T PRK13009 292 PFL--TP-PGKLVDAVVAAIEAVTGITPELSTSGGTSDARFIADYGAQVVEFGPVNA---TIHKVNECVSVADLEKLTRI 365 (375)
T ss_pred ccc--CC-CcHHHHHHHHHHHHHhCCCceeeccCCCccHHHHHHcCCCeEEeccCcc---cCCCCCCcEEHHHHHHHHHH
Confidence 443 23 3899999999999876554355566788999999999999999999865 59999999999999999999
Q ss_pred HHHHHHHHH
Q 013216 424 YESIIKAYA 432 (447)
Q Consensus 424 ~~~~l~~l~ 432 (447)
|..++..+.
T Consensus 366 ~~~~~~~~~ 374 (375)
T PRK13009 366 YERILERLL 374 (375)
T ss_pred HHHHHHHHh
Confidence 999998875
|
|
| >TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-56 Score=441.64 Aligned_cols=365 Identities=20% Similarity=0.344 Sum_probs=297.3
Q ss_pred HHHHhhhcccCCC-CCCChhHHHHHHHHHHHHCCCceEEEeecCCCC----eEEEEecCCCCCCCeEEEeeccccCCCCC
Q 013216 32 ERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALSLESQTLEFAKNKP----LILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (447)
Q Consensus 32 ~~l~~l~~ips~s-~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~----nl~~~~~g~~~~~~~ill~~H~Dtvp~~~ 106 (447)
++|++|++|||+| ++++|.++++||.++|+++|++++..+...+.. |+++.++|.+ .+|+|+|++||||||+++
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~ill~~H~DtVp~~~ 80 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNG-NEKSLIFNGHYDVVPAGD 80 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCC-CCCEEEEecccccccCCC
Confidence 6799999999987 467899999999999999999988765433333 4677777754 358999999999999975
Q ss_pred -CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCC
Q 013216 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (447)
Q Consensus 107 -~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (447)
++|+++||.+.++ +|++||||++|||++++++|.|++.|.+.+..++++|.|+|+++||.|+ .|++.+++++.+.+.
T Consensus 81 ~~~w~~~Pf~~~~~-~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~-~G~~~~~~~~~~~~~ 158 (375)
T TIGR01910 81 LELWKTDPFKPVEK-DGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGE-AGTLYLLQRGYFKDA 158 (375)
T ss_pred hhhCcCCCCCcEEE-CCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCc-hhHHHHHHcCCCCCC
Confidence 8999999999997 9999999999999999999999999999887789999999999999986 699999988766556
Q ss_pred ceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCC
Q 013216 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264 (447)
Q Consensus 186 ~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 264 (447)
|+.++.+ |++...++.+++|..+++|+++|+++|+|.|+.| ||+..++++|..|..+.....+.... .....
T Consensus 159 d~~i~~~-----~~~~~~v~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~--~~~~~ 231 (375)
T TIGR01910 159 DGVLIPE-----PSGGDNIVIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSY--GFIPG 231 (375)
T ss_pred CEEEECC-----CCCCCceEEEecceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc--cccCC
Confidence 7777654 4434678899999999999999999999999998 99999999999998764321110000 01123
Q ss_pred cceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCC--CCceEeeccccccccccccCC
Q 013216 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS--RNMTFELGQFKQRASLHDKFG 342 (447)
Q Consensus 265 ~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 342 (447)
.++++++.+++|. ..|+||++|++.+|+|+.|.++.+++.++|+++++... .+++++ +.. ...
T Consensus 232 ~~t~~i~~i~gG~------~~nviP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~------~~~ 296 (375)
T TIGR01910 232 PITFNPGVIKGGD------WVNSVPDYCEFSIDVRIIPEENLDEVKQIIEDVVKALSKSDGWLYE---NEP------VVK 296 (375)
T ss_pred CccccceeEECCC------CcCcCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhcCcHHhh---CCC------eee
Confidence 4689999999887 89999999999999999999999999999999887422 334444 321 122
Q ss_pred CCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHH
Q 013216 343 RPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGID 422 (447)
Q Consensus 343 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~ 422 (447)
.|.....+.++++++++.+++++..+..+.+....|++|++++.+.|+|++.|||+... ..|++||+++++++.++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~tD~~~~~~~gip~v~~Gpg~~~--~~H~~~E~v~~~~~~~~~~ 374 (375)
T TIGR01910 297 WSGPNETPPDSRLVKALEAIIKKVRGIEPEVLVSTGGTDARFLRKAGIPSIVYGPGDLE--TAHQVNEYISIKNLVESTK 374 (375)
T ss_pred ecCCcCCCCCCHHHHHHHHHHHHHhCCCCeEeeeccchhHHHHHHcCCcEEEECCCCcc--ccCCCCceeEHHHHHHHhh
Confidence 23112467789999999999998654433555677999999999999999999998543 6999999999999999876
Q ss_pred H
Q 013216 423 I 423 (447)
Q Consensus 423 ~ 423 (447)
+
T Consensus 375 ~ 375 (375)
T TIGR01910 375 V 375 (375)
T ss_pred C
Confidence 3
|
This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research. |
| >TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-55 Score=433.75 Aligned_cols=365 Identities=21% Similarity=0.306 Sum_probs=294.4
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC-CCC
Q 013216 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKW 109 (447)
Q Consensus 31 ~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~-~~W 109 (447)
+++|++|++|||+| ++|.+++++|.++|+++||+++.++. ++++|+++.. |. +.|+|+|+||+||||+++ +.|
T Consensus 2 ~~~l~~lv~ips~s--~~e~~~~~~i~~~l~~~G~~~~~~~~-~~~~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W 75 (370)
T TIGR01246 2 TELAKELISRPSVT--PNDAGCQDIIAERLEKLGFEIEWMHF-GDTKNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQW 75 (370)
T ss_pred hHHHHHHhcCCCCC--cchHHHHHHHHHHHHHCCCEEEEEec-CCCceEEEEe-cC--CCcEEEEEccccccCCCCcccc
Confidence 67899999999996 67889999999999999999886654 3667999986 43 348999999999999986 799
Q ss_pred CcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcccc--ccCCce
Q 013216 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV--FNSLNV 187 (447)
Q Consensus 110 ~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~--~~~~~~ 187 (447)
+++||++..+ ||++||||++|||+++++++.|++.|++.+.+++++|+|+|+++||.++..|++.+++... ....|+
T Consensus 76 ~~~p~~~~~~-dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~ 154 (370)
T TIGR01246 76 SSPPFEPVER-DGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDY 154 (370)
T ss_pred ccCCCCcEEE-CCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCE
Confidence 9999999997 9999999999999999999999999999887788999999999999875459998876321 123577
Q ss_pred EEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcc
Q 013216 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266 (447)
Q Consensus 188 ~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 266 (447)
+++.+.+...+.+ ..++.+++|..+++++++|+++|++.|+.+ ||+..+++++..|+.+... .. ......+
T Consensus 155 ~i~~ep~~~~~~~-~~i~~~~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~------~~-~~~~~~~ 226 (370)
T TIGR01246 155 CIVGEPSSVKKLG-DVIKNGRRGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWD------EG-NEFFPPT 226 (370)
T ss_pred EEEcCCCCcccCC-ceEEEeeeEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhc------cC-CccCCCC
Confidence 7765432111111 247889999999999999999999999998 9999999999988754211 00 0011235
Q ss_pred eeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcc
Q 013216 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPIL 346 (447)
Q Consensus 267 t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 346 (447)
+++++.+++|.. ..|+||++|++.+|+|++|.++.+++.++|+++++.. +..++ ++. .....|..
T Consensus 227 t~~i~~i~~g~~-----~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~--~~~~~---v~~-----~~~~~p~~ 291 (370)
T TIGR01246 227 SLQITNIHAGTG-----ANNVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQH--GLDYD---LEW-----SLSGEPFL 291 (370)
T ss_pred ceEeeeeecCCC-----CCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHc--CCCEE---EEE-----ecCCccee
Confidence 889999998742 5799999999999999999999999999999888632 33444 331 01233432
Q ss_pred cccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q 013216 347 TATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYES 426 (447)
Q Consensus 347 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~ 426 (447)
.+ ++++++.+.+++++..+..+.+...+|++|++++...|+|++.|||+.. ..|++||+++++++.+++++|.+
T Consensus 292 --~~-~~~~~~~~~~a~~~~~g~~~~~~~~~g~~d~~~~~~~g~p~~~~Gp~~~---~~H~~~E~i~i~~l~~~~~~~~~ 365 (370)
T TIGR01246 292 --TN-DGKLIDKAREAIEETNGIKPELSTGGGTSDGRFIALMGAEVVEFGPVNA---TIHKVNECVSIEDLEKLSDVYQD 365 (370)
T ss_pred --CC-CCHHHHHHHHHHHHHhCCCCceecCCCCchHHHHHHcCCCEEEecCCcc---cCCCCCceeEHHHHHHHHHHHHH
Confidence 33 8999999999999875544355566788999999999999999999875 58999999999999999999999
Q ss_pred HHHHH
Q 013216 427 IIKAY 431 (447)
Q Consensus 427 ~l~~l 431 (447)
++..|
T Consensus 366 ~l~~~ 370 (370)
T TIGR01246 366 LLENL 370 (370)
T ss_pred HHHhC
Confidence 98764
|
This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason. |
| >PRK08201 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-55 Score=443.87 Aligned_cols=390 Identities=19% Similarity=0.265 Sum_probs=301.3
Q ss_pred CCChhHHHHHHHhhhcccCCCCC----CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeecc
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHT 99 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~----~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~ 99 (447)
+.+.++++++|++|++|||+|+. .++.++++||.++|+++|++...+....+++||++.+.|. +++|+|+|+||+
T Consensus 10 ~~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~-~~~~~lll~gH~ 88 (456)
T PRK08201 10 RERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHA-PGKPTVLIYGHY 88 (456)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCC-CCCCEEEEEecc
Confidence 45678999999999999999742 2467899999999999999743333344788999988664 345899999999
Q ss_pred ccCCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHc
Q 013216 100 DVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD 178 (447)
Q Consensus 100 Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~ 178 (447)
||||+++ +.|+++||++.++ ||+|||||++|||++++++|.|++.|.+.+..++++|.|++++|||+|+ .|+..+++
T Consensus 89 DvVp~~~~~~W~~dPf~~~~~-~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g~~~~l~ 166 (456)
T PRK08201 89 DVQPVDPLNLWETPPFEPTIR-DGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGS-PNLDSFVE 166 (456)
T ss_pred CCcCCCchhcccCCCCceEeE-CCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCC-ccHHHHHH
Confidence 9999987 6799999999997 9999999999999999999999999988766678899999999999987 58888887
Q ss_pred ccc--ccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCC--ccCCCC-CC-CHHHHHHHHHHHHHhchhh--
Q 013216 179 SHV--FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPG--HGAKLY-DN-SAMENLFKSIESVRRFRAS-- 250 (447)
Q Consensus 179 ~~~--~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~--Hs~~p~-~g-nai~~~~~~i~~l~~~~~~-- 250 (447)
+.. + ..|++++.+.+...++. ..+++++||..+++|+++|+++ |||.|. .+ |||..++++|..|.++...
T Consensus 167 ~~~~~~-~~d~~ii~e~~~~~~~~-~~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~~~ 244 (456)
T PRK08201 167 EEKDKL-AADVVLISDTTLLGPGK-PAICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVA 244 (456)
T ss_pred hhHHhc-cCCEEEEeCCCcCCCCC-EEEEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhcCCCCCCEe
Confidence 532 3 24777877654322322 4699999999999999999998 998765 45 9999999999999763210
Q ss_pred --------------hHHHHHh------------ccc-cC-----------CCcceeeeeeeecCCCCCCCccccccCCce
Q 013216 251 --------------QFDLVKA------------GLK-AE-----------GEVVSVNMAFLKAGTPSPNGFVMNLQPSEA 292 (447)
Q Consensus 251 --------------~~~~~~~------------~~~-~~-----------~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~ 292 (447)
.+..... +.. .. ...+|++++.|++|. .++...|+||++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~--~~~~~~NvVP~~a 322 (456)
T PRK08201 245 VEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGYTALERTWARPTLELNGVYGGF--QGEGTKTVIPAEA 322 (456)
T ss_pred cCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcchHHHHHHHhCCcEEEEeeecCC--CCCCCceEECcce
Confidence 0000000 000 00 013588899888875 2334689999999
Q ss_pred EEEEeeecCCCCCHHHHHHHHHHHhccC-CCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCC
Q 013216 293 EAGFDIRVPPTTDAESLERRIVEEWAPA-SRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLG 371 (447)
Q Consensus 293 ~~~~d~R~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~ 371 (447)
++.+|+|+.|.++.+++.++|+++++.. ..+.+++ +.. ....|++ .++.++++++++.+++++.++..+
T Consensus 323 ~~~~diR~~p~~~~e~v~~~i~~~l~~~~~~~~~v~---~~~------~~~~~~~-~~~~~~~~~~~l~~a~~~~~g~~~ 392 (456)
T PRK08201 323 HAKITCRLVPDQDPQEILDLIEAHLQAHTPAGVRVT---IRR------FDKGPAF-VAPIDHPAIQAAARAYEAVYGTEA 392 (456)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEE---EEE------CCCcCce-ecCCCCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999888742 1233444 321 1233443 467789999999999998765442
Q ss_pred CceecCCCc---chHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013216 372 KPEIFPAST---DARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 372 ~~~~~~g~~---D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~ 432 (447)
.. ...|++ |+.++...|+|++.|||+... .++|++||+++++++.+++++|..++..++
T Consensus 393 ~~-~~~gg~~~~~~~~~~~~gip~v~~GpG~~~-~~~H~~nE~v~i~~l~~~~~~l~~~~~~~~ 454 (456)
T PRK08201 393 AF-TRMGGSIPVVETFSSQLHIPIVLMGFGLPS-ENFHAPNEHFHLENFDKGLRTLVEYWHQLA 454 (456)
T ss_pred ee-cCCCCcHHHHHHHHHHhCCCEEEecCCCCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence 22 233445 677777789999999998532 269999999999999999999999999874
|
|
| >PRK07906 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=438.41 Aligned_cols=376 Identities=28% Similarity=0.474 Sum_probs=295.3
Q ss_pred HHHHHhhhcccCCCCC----CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC
Q 013216 31 IERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (447)
Q Consensus 31 ~~~l~~l~~ips~s~~----~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~ 106 (447)
+++|++|++|||+|+. ++|.++++||.++|+++|++++.++..++++|+++.++|.+++.++|+|++|+||||+++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~ 81 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEA 81 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCc
Confidence 6789999999999842 578899999999999999999877655577899999987655558999999999999987
Q ss_pred CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccc--cccC
Q 013216 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFNS 184 (447)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~~~ 184 (447)
+.|+++||++.++ ||++||||++|||++++++|.|++.|++.+..++++|.|+|+++||+|+..|++.++++. .+..
T Consensus 82 ~~W~~~Pf~~~~~-dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~~~~ 160 (426)
T PRK07906 82 ADWSVHPFSGEIR-DGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEG 160 (426)
T ss_pred ccCccCCCCceee-CCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHhccc
Confidence 7899999999997 999999999999999999999999999998888999999999999998656999998753 2322
Q ss_pred CceEEEEecCCc-----CcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhh--------
Q 013216 185 LNVGIVLDEGLA-----STTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQ-------- 251 (447)
Q Consensus 185 ~~~~~~~d~g~~-----~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~-------- 251 (447)
.+ .++.+.+.. .+.....++.++||..+++|+++|+++|+|.|+..||+..++++|..|..+....
T Consensus 161 ~~-~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~~v~v~G~~~Hss~p~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~ 239 (426)
T PRK07906 161 VT-EAISEVGGFSLTVPGRDRLYLIETAEKGLAWMRLTARGRAGHGSMVNDDNAVTRLAEAVARIGRHRWPLVLTPTVRA 239 (426)
T ss_pred hh-eEEECCCceeeccCCCccEEEEEeccceEEEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccCHHHHH
Confidence 22 233332221 1111245889999999999999999999999875599999999999997643210
Q ss_pred -HHHHHh--cc--------------------ccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHH
Q 013216 252 -FDLVKA--GL--------------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAES 308 (447)
Q Consensus 252 -~~~~~~--~~--------------------~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~ 308 (447)
++.+.. +. ......+|++++.|++|. +.|+||++|++.+|+|+.|.++ ++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG~------~~NviP~~~~~~~d~R~~p~~~-~~ 312 (426)
T PRK07906 240 FLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAGY------KVNVIPGTAEAVVDGRFLPGRE-EE 312 (426)
T ss_pred HHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEeccC------ccccCCCceEEEEEEeECCCCc-HH
Confidence 000000 00 000013589999999887 8999999999999999999886 77
Q ss_pred HHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCC-CCCceecCCCcchHHHHH
Q 013216 309 LERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGK-LGKPEIFPASTDARYFRE 387 (447)
Q Consensus 309 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~g~~D~~~~~~ 387 (447)
+.+.|++++.. .++++ +. .. .|++ .++.++++++.+++++++.++. .+.+....|+||+++|..
T Consensus 313 i~~~i~~~~~~---~v~~~---~~-------~~-~~~~-~~~~~~~~v~~l~~a~~~~~~~~~~~~~~~~ggtDa~~~~~ 377 (426)
T PRK07906 313 FLATVDELLGP---DVERE---WV-------HR-DPAL-ETPFDGPLVDAMNAALLAEDPGARVVPYMLSGGTDAKAFSR 377 (426)
T ss_pred HHHHHHHHhCC---CeEEE---Ee-------cC-CCCC-CCCCCcHHHHHHHHHHHHHCCCCeEeeeeecccCcHHHHHh
Confidence 88888776641 34444 32 22 3333 3567899999999999987532 223445678899999999
Q ss_pred cCCCeEEEccCCCC-----CCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 013216 388 RGLPAIGFSPMANT-----PILLHDHNEFLNQAEYLKGIDIYESIIKA 430 (447)
Q Consensus 388 ~g~p~~~~gp~~~~-----~~~~H~~~E~v~~~~l~~~~~~~~~~l~~ 430 (447)
.|+|++.|||+... ..++|++||+++++++.+++++|+.++..
T Consensus 378 ~g~p~~~~gp~~~~~~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~ 425 (426)
T PRK07906 378 LGIRCYGFAPLRLPPDLDFAALFHGVDERVPVDALRFGVRVLDRFLRT 425 (426)
T ss_pred cCCceEEEeccccCccccccccCcCCCCceeHHHHHHHHHHHHHHHHh
Confidence 99999999997521 13689999999999999999999999865
|
|
| >TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=430.62 Aligned_cols=358 Identities=20% Similarity=0.268 Sum_probs=286.7
Q ss_pred HHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecC--CCCeEEEEecCCCCCCCeEEEeeccccCCCCCCCC
Q 013216 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK--NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKW 109 (447)
Q Consensus 32 ~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~--~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W 109 (447)
++|++|++|||+|+. ++.+++++|.++|+++|++++.++..+ +++||++.+.++ +.++|+|+|||||||.+++.|
T Consensus 1 ~~l~~lv~i~S~s~~-~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~--~~~~i~l~~H~Dtvp~~~~~w 77 (364)
T TIGR01892 1 EILTKLVAFDSTSFR-PNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPS--GAGGLALSGHTDVVPYDDAAW 77 (364)
T ss_pred ChHHHhhCcCCcCCc-cHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCC--CCCeEEEEcccccccCCCCcC
Confidence 368999999999732 347999999999999999988765432 368999998553 347899999999999988899
Q ss_pred CcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEE
Q 013216 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189 (447)
Q Consensus 110 ~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~ 189 (447)
+++||++.++ +|++||||++|||++++++|.|++.|++.+ ++++|.|+|+++||+|+ .|++++++++.+ +.|.++
T Consensus 78 ~~~Pf~~~~~-~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~g~-~G~~~~~~~~~~-~~d~~i 152 (364)
T TIGR01892 78 TRDPFRLTEK-DGRLYGRGTCDMKGFLACALAAAPDLAAEQ--LKKPLHLALTADEEVGC-TGAPKMIEAGAG-RPRHAI 152 (364)
T ss_pred CCCCCcceee-CCEEEecCccccchHHHHHHHHHHHHHhcC--cCCCEEEEEEeccccCC-cCHHHHHHhcCC-CCCEEE
Confidence 9999999997 999999999999999999999999998754 57899999999999986 699999987653 346655
Q ss_pred EEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCccee
Q 013216 190 VLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSV 268 (447)
Q Consensus 190 ~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~ 268 (447)
+. +|+. ..++.+++|..+++|+++|+++|++.|+.| ||+..+++++..|+.+....... ..........+++
T Consensus 153 ~~-----ep~~-~~~~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~-~~~~~~~~~~~~~ 225 (364)
T TIGR01892 153 IG-----EPTR-LIPVRAHKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLLRE-DLDEGFTPPYTTL 225 (364)
T ss_pred EC-----CCCC-ceeEEeeceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhccC-CCCccCCCCCceE
Confidence 53 5654 456778999999999999999999999999 99999999999998764211000 0000000124689
Q ss_pred eeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC---CCCceEeeccccccccccccCCCCc
Q 013216 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA---SRNMTFELGQFKQRASLHDKFGRPI 345 (447)
Q Consensus 269 ~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ 345 (447)
+++.+++|. ..|+||++|++.+|+|+.|.++.+++.++|+++++.. .++.+++ ++. ....|+
T Consensus 226 ~i~~i~gg~------~~nviP~~~~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~v~---~~~------~~~~~~ 290 (364)
T TIGR01892 226 NIGVIQGGK------AVNIIPGACEFVFEWRPIPGMDPEELLQLLETIAQALVRDEPGFEVQ---IEV------VSTDPG 290 (364)
T ss_pred EEeeeecCC------CCcccCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhhCCCceEE---EEE------ccCCCC
Confidence 999999886 8999999999999999999999999999999888632 3445555 431 233444
Q ss_pred ccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013216 346 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 425 (447)
Q Consensus 346 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~ 425 (447)
+ ..+.++++++.+.++... . +...++++|+++|...|+|++.|||+... ..|++||+++++++.+++++|.
T Consensus 291 ~-~~~~~~~~v~~~~~~~~~---~---~~~~~~~tD~~~~~~~gip~v~~Gpg~~~--~~H~~~E~i~i~~l~~~~~~~~ 361 (364)
T TIGR01892 291 V-NTEPDAELVAFLEELSGN---A---PEVVSYGTEAPQFQELGAEAVVCGPGDIR--QAHQPDEYVEIEDLVRCRAVLA 361 (364)
T ss_pred c-CCCCCCHHHHHHHHHhCC---C---CceecccccHHHHHhCCCcEEEECCCChH--hCCCCCceeeHHHHHHHHHHHH
Confidence 3 456678999988765422 2 23456789999999999999999998643 6899999999999999999998
Q ss_pred HHH
Q 013216 426 SII 428 (447)
Q Consensus 426 ~~l 428 (447)
.++
T Consensus 362 ~~~ 364 (364)
T TIGR01892 362 RLV 364 (364)
T ss_pred HhC
Confidence 763
|
This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes. |
| >PRK06446 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=435.56 Aligned_cols=383 Identities=19% Similarity=0.233 Sum_probs=295.3
Q ss_pred hHHHHHHHhhhcccCCCCCCC-hhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC
Q 013216 28 DSIIERFRAYLQIDTSQPNPD-YTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~~~~-e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~ 106 (447)
++++++|++|++|||+|+.++ +.++++||.++|+++|++++..+. .+++||++.+++ + .+|+|+|+|||||||+++
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~-~~~~~lia~~~~-~-~~~~vll~gH~DvVp~~~ 78 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERT-KGHPVVYGEINV-G-AKKTLLIYNHYDVQPVDP 78 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEec-CCCCEEEEEecC-C-CCCEEEEEecccCCCCCc
Confidence 578999999999999974322 279999999999999999987654 378899999853 2 358999999999999987
Q ss_pred -CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcccc-ccC
Q 013216 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV-FNS 184 (447)
Q Consensus 107 -~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~-~~~ 184 (447)
+.|+++||++.++ ||+|||||++|||++++++|.|++.|++.+ .++.+|.|+|+++||+|+ .|++.++++.. .-+
T Consensus 79 ~~~W~~~Pf~~~~~-dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~-~g~~~~l~~~~~~~~ 155 (436)
T PRK06446 79 LSEWKRDPFSATIE-NGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGS-PNLEDFIEKNKNKLK 155 (436)
T ss_pred cccccCCCCceEEE-CCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCC-HhHHHHHHHHHHHhC
Confidence 8899999999997 999999999999999999999999988765 578899999999999987 68888887632 223
Q ss_pred CceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEee--cCCccCCCCCC-CHHHHHHHHHHHHHhchh------------
Q 013216 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAKLYDN-SAMENLFKSIESVRRFRA------------ 249 (447)
Q Consensus 185 ~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G--~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~------------ 249 (447)
.|++++ +.....+.+...++.++||..+++++++| +++|+|.|+.+ ||+..+++++.+|.+...
T Consensus 156 ~d~vi~-E~~~~~~~~~~~i~~~~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 234 (436)
T PRK06446 156 ADSVIM-EGAGLDPKGRPQIVLGVKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVR 234 (436)
T ss_pred CCEEEE-CCCCccCCCCeEEEEecCeEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCC
Confidence 466553 32222233345789999999999999999 99999999888 999999999999976420
Q ss_pred ----hhHHHHHh------------c------------cccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecC
Q 013216 250 ----SQFDLVKA------------G------------LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVP 301 (447)
Q Consensus 250 ----~~~~~~~~------------~------------~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~ 301 (447)
.....+.. + .......++++++.+++|.. ++...|+||++|++.+|+|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~t~nv~~i~~g~~--~~~~~nvvP~~a~~~~d~R~~ 312 (436)
T PRK06446 235 ELTEEERELLKKYDIDVEELRKALGFKELKYSDREKIAEALLTEPTCNIDGFYSGYT--GKGSKTIVPSRAFAKLDFRLV 312 (436)
T ss_pred CCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCcccHHHHHHhCCcEEEeeeecccc--CCCCCcEecCceEEEEEEEcC
Confidence 00000000 0 00011246899999988742 222679999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceec-CCCc
Q 013216 302 PTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIF-PAST 380 (447)
Q Consensus 302 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~g~~ 380 (447)
|.++.+++.++|+++++.....++++ +. ....|. .++.++|+++.+.+++++..+..+..... +|++
T Consensus 313 p~~~~~~v~~~l~~~~~~~~~~~~~~---~~-------~~~~p~--~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~~g~~ 380 (436)
T PRK06446 313 PNQDPYKIFELLKKHLQKVGFNGEII---VH-------GFEYPV--RTSVNSKVVKAMIESAKRVYGTEPVVIPNSAGTQ 380 (436)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEE---Ec-------CCccee--ecCCCCHHHHHHHHHHHHHhCCCCceecCCCCcc
Confidence 99999999999999987432334444 22 233443 35568999999999999986543233323 4566
Q ss_pred chHHHHH-cCCCeE--EEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013216 381 DARYFRE-RGLPAI--GFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 381 D~~~~~~-~g~p~~--~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~ 432 (447)
|+++|.+ .|+|++ .|||+..+ .++|++||+++++++.+++++|..++..++
T Consensus 381 d~~~~~~~~gip~v~~~~g~g~~~-~~~H~~dE~i~i~~l~~~~~~~~~~~~~~~ 434 (436)
T PRK06446 381 PMGLFVYKLGIRDIVSAIGVGGYY-SNAHAPNENIRIDDYYKAIKHTEEFLKLYS 434 (436)
T ss_pred hHHHHHHHhCCCcceeecccCCCC-cCCcCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 8887755 699975 36665322 379999999999999999999999998775
|
|
| >PRK07522 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=432.24 Aligned_cols=368 Identities=21% Similarity=0.253 Sum_probs=293.5
Q ss_pred hHHHHHHHhhhcccCCCCCCCh-hHHHHHHHHHHHHCCCceEEEeec-CCCCeEEEEecCCCCCCCeEEEeeccccCCCC
Q 013216 28 DSIIERFRAYLQIDTSQPNPDY-TNASKFILAQAEALSLESQTLEFA-KNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~~~~e-~~~~~~i~~~l~~~G~~~~~~~~~-~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~ 105 (447)
.+++++|++|++|||+| +++ .+++++|.++|+++|++++.++.. .+++||++.+++. ..|+|+|+|||||||++
T Consensus 4 ~~~~~~l~~lv~i~S~s--~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~--~~~~ill~~H~Dtv~~~ 79 (385)
T PRK07522 4 MSSLDILERLVAFDTVS--RDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPA--DRGGIVLSGHTDVVPVD 79 (385)
T ss_pred hhHHHHHHHHhCCCCcC--CCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCC--CCCeEEEEeecccccCC
Confidence 57899999999999987 454 599999999999999998765433 2568999998544 24899999999999998
Q ss_pred CCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccc--c
Q 013216 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF--N 183 (447)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~--~ 183 (447)
++.|+.+||++.++ ||++||||++|||++++++|.|++.|.+.+ ++++|.|+|+++||.|+ .|++++++.... .
T Consensus 80 ~~~W~~~pf~~~~~-~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~dEE~g~-~G~~~l~~~~~~~~~ 155 (385)
T PRK07522 80 GQAWTSDPFRLTER-DGRLYGRGTCDMKGFIAAALAAVPELAAAP--LRRPLHLAFSYDEEVGC-LGVPSMIARLPERGV 155 (385)
T ss_pred CCCCCCCCCceEEE-CCEEEeccccccchHHHHHHHHHHHHHhCC--CCCCEEEEEEeccccCC-ccHHHHHHHhhhcCC
Confidence 88999999999997 999999999999999999999999998864 57899999999999886 699999875321 1
Q ss_pred CCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccC
Q 013216 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (447)
Q Consensus 184 ~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 262 (447)
..|++++. +|+. ..++.+++|..+++|+++|+++|+|.|+.+ ||+..+++++..|+++...............
T Consensus 156 ~~d~~i~~-----ep~~-~~~~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 229 (385)
T PRK07522 156 KPAGCIVG-----EPTS-MRPVVGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAPGPFDALFD 229 (385)
T ss_pred CCCEEEEc-----cCCC-CeeeeeecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhhcCCCCcCCC
Confidence 24555543 4654 578899999999999999999999999888 9999999999999875432110000000000
Q ss_pred CCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--------CCCCceEeecccccc
Q 013216 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--------ASRNMTFELGQFKQR 334 (447)
Q Consensus 263 ~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--------~~~~~~~~~~~~~~~ 334 (447)
...++++++.+++|. ..|+||++|++.+|+|+.|.++.+++.++|++.++. ..++++++ ++.
T Consensus 230 ~~~~t~~i~~i~gG~------~~nviP~~a~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~v~---~~~- 299 (385)
T PRK07522 230 PPYSTLQTGTIQGGT------ALNIVPAECEFDFEFRNLPGDDPEAILARIRAYAEAELLPEMRAVHPEAAIE---FEP- 299 (385)
T ss_pred CCcceeEEeeeecCc------cccccCCceEEEEEEccCCCCCHHHHHHHHHHHHHhhcchhhhhhcCCCcEE---EEe-
Confidence 113688999999876 889999999999999999999999999999988864 12344454 331
Q ss_pred ccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccH
Q 013216 335 ASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQ 414 (447)
Q Consensus 335 ~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~ 414 (447)
...+|++ ..+.++++++.++++..+ . ......+++|+++|+..|+|++.|||+... .+|++||++++
T Consensus 300 -----~~~~~~~-~~~~~~~~v~~~~~~~~~----~-~~~~~~~~td~~~~~~~gip~v~~Gpg~~~--~~H~~~E~i~i 366 (385)
T PRK07522 300 -----LSAYPGL-DTAEDAAAARLVRALTGD----N-DLRKVAYGTEAGLFQRAGIPTVVCGPGSIE--QAHKPDEFVEL 366 (385)
T ss_pred -----ccCCCCC-CCCCCcHHHHHHHHHhCC----C-CcceEeeecchHHhccCCCCEEEECCCChh--hCCCCCccccH
Confidence 2234444 456678988888775433 2 122345789999999889999999998654 69999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013216 415 AEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 415 ~~l~~~~~~~~~~l~~l~ 432 (447)
+++.+++++|..++..++
T Consensus 367 ~~l~~~~~~~~~~~~~~~ 384 (385)
T PRK07522 367 AQLAACEAFLRRLLASLA 384 (385)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998875
|
|
| >PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-54 Score=431.12 Aligned_cols=377 Identities=24% Similarity=0.369 Sum_probs=301.3
Q ss_pred CCChhHHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecCC--------CCeEEEEecCCCCCCCeEE
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKN--------KPLILLKWPGSNPQLPSIL 94 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~-~~e~~~~~~i~~~l~~~G~~~~~~~~~~~--------~~nl~~~~~g~~~~~~~il 94 (447)
++..++++++|++|++|||+|++ .++.++++||.++|+++|++++..+...+ ++|+++.. +.+ .|+|+
T Consensus 2 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~il 78 (394)
T PRK08651 2 EAMMFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARR-GSG--NPHLH 78 (394)
T ss_pred chhHHHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEe-CCC--CceEE
Confidence 34678999999999999999853 45778999999999999999887654322 35678765 332 38999
Q ss_pred EeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHH
Q 013216 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (447)
Q Consensus 95 l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (447)
|+|||||||.++..|+.+||.+.++ +|++||||++|||++++++|.|++.|.+.+ +++|.|+|+++||+|+ .|++
T Consensus 79 l~~HlDtvp~~~~~~~~~Pf~~~~~-~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~-~G~~ 153 (394)
T PRK08651 79 FNGHYDVVPPGEGWSVNVPFEPKVK-DGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGG-TGTG 153 (394)
T ss_pred EEeeeeeecCCCCccccCCCCcEEE-CCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccc-hhHH
Confidence 9999999999864479999999997 999999999999999999999999998765 6899999999999986 7999
Q ss_pred HHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHH
Q 013216 175 KFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFD 253 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~ 253 (447)
++++++.++ .|.+++.+ |+....++.+++|..+++|+++|+++|++.|+.| ||+..+++++..|..+......
T Consensus 154 ~~~~~~~~~-~d~~i~~~-----~~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~ 227 (394)
T PRK08651 154 YLVEEGKVT-PDYVIVGE-----PSGLDNICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKS 227 (394)
T ss_pred HHHhccCCC-CCEEEEec-----CCCCCceEEecccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhc
Confidence 999876554 46666654 4442368889999999999999999999999988 9999999999999765331110
Q ss_pred HHHhccccCCCcceeeeee--eecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC--CCCceEeec
Q 013216 254 LVKAGLKAEGEVVSVNMAF--LKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFELG 329 (447)
Q Consensus 254 ~~~~~~~~~~~~~t~~~~~--i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~ 329 (447)
... ........++++++. +++|. ..|+||++|++.+|+|+.|.++.+++.++|+++++.. ..+++++
T Consensus 228 ~~~-~~~~~~~~~~~~ig~~~i~gG~------~~nviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~~~~~~-- 298 (394)
T PRK08651 228 KYE-YDDERGAKPTVTLGGPTVEGGT------KTNIVPGYCAFSIDRRLIPEETAEEVRDELEALLDEVAPELGIEVE-- 298 (394)
T ss_pred ccc-ccccccCCCceeecceeeeCCC------CCCccCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhccCCCee--
Confidence 000 000011234677777 77776 8999999999999999999999999999999888732 2344444
Q ss_pred cccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCC
Q 013216 330 QFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHN 409 (447)
Q Consensus 330 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~ 409 (447)
+.. ....|++ ..+.++++++.+++++++..+..+.+..+.|++|+++|...|+|++.|||+... ..|++|
T Consensus 299 -i~~------~~~~~~~-~~~~~~~l~~~~~~a~~~~~g~~~~~~~~~g~tD~~~~~~~gip~v~~Gpg~~~--~~H~~~ 368 (394)
T PRK08651 299 -FEI------TPFSEAF-VTDPDSELVKALREAIREVLGVEPKKTISLGGTDARFFGAKGIPTVVYGPGELE--LAHAPD 368 (394)
T ss_pred -EEE------ecccCCc-cCCCCCHHHHHHHHHHHHHhCCCCceeeecCcccHHHHhhCCCcEEEECCCChH--hcCCCC
Confidence 331 1223333 356678999999999999654433556677999999999999999999998643 699999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHh
Q 013216 410 EFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 410 E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
|+++++++.+++++|.+++..+++
T Consensus 369 E~i~~~~l~~~~~i~~~~i~~l~~ 392 (394)
T PRK08651 369 EYVEVKDVEKAAKVYEEVLKRLAK 392 (394)
T ss_pred ceeEHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998854
|
|
| >PRK05111 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-54 Score=430.14 Aligned_cols=368 Identities=21% Similarity=0.287 Sum_probs=292.4
Q ss_pred hhHHHHHHHhhhcccCCCCCC-----ChhHHHHHHHHHHHHCCCceEEEeec--CCCCeEEEEecCCCCCCCeEEEeecc
Q 013216 27 DDSIIERFRAYLQIDTSQPNP-----DYTNASKFILAQAEALSLESQTLEFA--KNKPLILLKWPGSNPQLPSILLNSHT 99 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~-----~e~~~~~~i~~~l~~~G~~~~~~~~~--~~~~nl~~~~~g~~~~~~~ill~~H~ 99 (447)
.++++++|++|++|||+|+.. ++.++++||.++|+++|++++.++.. .+++|+++++ |.+ .++|+|+|||
T Consensus 4 ~~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~-g~~--~~~il~~~H~ 80 (383)
T PRK05111 4 LPSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASL-GSG--EGGLLLAGHT 80 (383)
T ss_pred chHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEe-CCC--CCeEEEEeee
Confidence 347999999999999997422 24679999999999999998866542 2567999998 543 2679999999
Q ss_pred ccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcc
Q 013216 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (447)
Q Consensus 100 Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (447)
||||+.+..|+.+||++.++ ||++||||++|||++++++|.|++.|.+.+ ++++|.|+|+++||+|+ .|+++++++
T Consensus 81 Dvvp~~~~~W~~~Pf~~~~~-~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~g~-~G~~~~~~~ 156 (383)
T PRK05111 81 DTVPFDEGRWTRDPFTLTEH-DGKLYGLGTADMKGFFAFILEALRDIDLTK--LKKPLYILATADEETSM-AGARAFAEA 156 (383)
T ss_pred ceecCCCCcCcCCCCccEEE-CCEEEecccccccHHHHHHHHHHHHHhhcC--CCCCeEEEEEeccccCc-ccHHHHHhc
Confidence 99999877899999999997 999999999999999999999999998753 57899999999999986 699999987
Q ss_pred ccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhc
Q 013216 180 HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (447)
Q Consensus 180 ~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~ 258 (447)
+.+. .|++++. +|+. ..++.+++|..+++|+++|+++|+|.|+.| ||+..+++++..|+.+.....+....
T Consensus 157 ~~~~-~d~~i~~-----ep~~-~~~~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~- 228 (383)
T PRK05111 157 TAIR-PDCAIIG-----EPTS-LKPVRAHKGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYHN- 228 (383)
T ss_pred CCCC-CCEEEEc-----CCCC-CceeecccceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCCC-
Confidence 6554 3665553 4654 456789999999999999999999999999 99999999999987754211000000
Q ss_pred cccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC--CCCceEeecccccccc
Q 013216 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFELGQFKQRAS 336 (447)
Q Consensus 259 ~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~ 336 (447)
.......++++++.+++|. ..|+||++|++.+|+|+.|.++.+++.++|++.++.. ..+.+++ +..
T Consensus 229 ~~~~~~~~t~~i~~i~gg~------~~NvVP~~~~~~~diR~~p~~~~~~v~~~i~~~i~~~~~~~~~~~~---~~~--- 296 (383)
T PRK05111 229 PAFTVPYPTLNLGHIHGGD------APNRICGCCELHFDIRPLPGMTLEDLRGLLREALAPVSERWPGRIT---VAP--- 296 (383)
T ss_pred ccCCCCCCceeEeeeecCC------cCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhCCCeEE---Eec---
Confidence 0000124689999999887 8999999999999999999999999999999888632 2334555 331
Q ss_pred ccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHH
Q 013216 337 LHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAE 416 (447)
Q Consensus 337 ~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~ 416 (447)
.....|++ ..+.++++++.+.+++ +.. +...++++|+.++...|+|++.|||+... .+|++||++++++
T Consensus 297 --~~~~~~~~-~~~~~~~l~~~~~~~~---g~~---~~~~~~~~Da~~~~~~g~p~v~~G~g~~~--~~H~~~E~v~~~~ 365 (383)
T PRK05111 297 --LHPPIPGY-ECPADHQLVRVVEKLL---GHK---AEVVNYCTEAPFIQQLGCPTLVLGPGSIE--QAHQPDEYLELSF 365 (383)
T ss_pred --cccCCCCc-CCCCCCHHHHHHHHHh---CCC---CceeeeeccHHHHHhcCCCEEEECCCchH--hCcCCCCcccHHH
Confidence 01233433 3456788888876654 222 22345789999999999999999998633 6999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013216 417 YLKGIDIYESIIKAYA 432 (447)
Q Consensus 417 l~~~~~~~~~~l~~l~ 432 (447)
+.+++++|..++..++
T Consensus 366 l~~~~~i~~~~~~~~~ 381 (383)
T PRK05111 366 IKPTRELLRQLIHHFC 381 (383)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998875
|
|
| >PRK13004 peptidase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-54 Score=430.36 Aligned_cols=380 Identities=17% Similarity=0.195 Sum_probs=302.4
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeecccc
Q 013216 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (447)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dt 101 (447)
..+.+.+++++++++|++|||+| ++|.+++++|.++|+++|+++..++ +..|+++.+.+. .|+|+|++|+||
T Consensus 9 ~~~~~~~~~~~~l~~lv~ips~s--~~e~~~a~~l~~~l~~~G~~~~~~~---~~~n~~a~~~~~---~~~i~~~~H~Dt 80 (399)
T PRK13004 9 LAEKYKADMTRFLRDLIRIPSES--GDEKRVVKRIKEEMEKVGFDKVEID---PMGNVLGYIGHG---KKLIAFDAHIDT 80 (399)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCcEEEEc---CCCeEEEEECCC---CcEEEEEeccCc
Confidence 44567789999999999999986 7899999999999999999865443 456999988543 289999999999
Q ss_pred CCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccc
Q 013216 102 VPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (447)
Q Consensus 102 vp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (447)
||+++ ++|+++||++.++ ||++||||++|||++++++|.|++.|.+.+..++++|.|+|+++||.++..|+++++++.
T Consensus 81 Vp~~~~~~w~~~P~~~~~~-~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~ 159 (399)
T PRK13004 81 VGIGDIKNWDFDPFEGEED-DGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEED 159 (399)
T ss_pred cCCCChhhcccCCCccEEE-CCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhc
Confidence 99976 7899999999997 999999999999999999999999999988778999999999999964325788888764
Q ss_pred cccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhcc
Q 013216 181 VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (447)
Q Consensus 181 ~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~ 259 (447)
.+. .|++++.+ |+. ..++.+++|..+++|+++|+++|++.|+.| ||+..+++++..|+.+..... .
T Consensus 160 ~~~-~d~~i~~e-----~~~-~~i~~~~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~~----~-- 226 (399)
T PRK13004 160 KIK-PDFVVITE-----PTD-LNIYRGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLK----E-- 226 (399)
T ss_pred CCC-CCEEEEcc-----CCC-CceEEecceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccccc----c--
Confidence 443 57777753 443 578899999999999999999999999999 999999999999987643210 0
Q ss_pred ccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccc-c-c--
Q 013216 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQ-R-A-- 335 (447)
Q Consensus 260 ~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~-~-~-- 335 (447)
.......+++++.+++|. ...|+||++|++.+|+|+.|.++.+++.++|+++......+.+++ +.. . +
T Consensus 227 ~~~~~~~~~~v~~i~~g~-----~~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~v~---~~~~~~~~~ 298 (399)
T PRK13004 227 DPFLGKGTLTVSDIFSTS-----PSRCAVPDSCAISIDRRLTVGETWESVLAEIRALPAVKKANAKVS---MYNYDRPSY 298 (399)
T ss_pred CCcCCCceEEEeeeecCC-----CCCCccCCEEEEEEEEcCCCCCCHHHHHHHHHHHHhhccccceEE---EecccCCCc
Confidence 001112467888887653 279999999999999999999999999999988854222233343 210 0 0
Q ss_pred ---cccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHH-HHcCCCeEEEccCCCCCCCCCCCCcc
Q 013216 336 ---SLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYF-RERGLPAIGFSPMANTPILLHDHNEF 411 (447)
Q Consensus 336 ---~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~-~~~g~p~~~~gp~~~~~~~~H~~~E~ 411 (447)
.+......|++ .++.++|+++.+.+++++..+..+.+...++++|++.+ +.+|+|++.|||+... .+|++||+
T Consensus 299 ~~~~~~~~~~~p~~-~~~~~~~~~~~l~~a~~~~~g~~~~~~~~~~~td~~~~~~~~Gip~v~~Gpg~~~--~aH~~nE~ 375 (399)
T PRK13004 299 TGLVYPTECYFPTW-LYPEDHEFVKAAVEAYKGLFGKAPEVDKWTFSTNGVSIAGRAGIPTIGFGPGKEP--LAHAPNEY 375 (399)
T ss_pred cccccccccccccc-ccCCCCHHHHHHHHHHHHHhCCCCeecccccccCCeEEehhcCCCEEEECCCccc--ccCCCCce
Confidence 00011233444 46778999999999999985543244456678887765 4679999999998643 69999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Q 013216 412 LNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 412 v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
++++++.+++++|..++..+++.
T Consensus 376 i~i~~l~~~~~~~~~~~~~~~~~ 398 (399)
T PRK13004 376 TWKEQLVKAAAMYAAIPKSLLKK 398 (399)
T ss_pred eEHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999853
|
|
| >TIGR03526 selenium_YgeY putative selenium metabolism hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-54 Score=429.29 Aligned_cols=377 Identities=16% Similarity=0.167 Sum_probs=297.8
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccC
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtv 102 (447)
.+...+++++++++|++|||+| ++|.+++++|.++|+++|+++...+ ...|+++.+ |.+ .++|+|+||+|||
T Consensus 8 ~~~~~~~~~~~l~~Lv~ips~s--~~e~~~~~~l~~~l~~~g~~~~~~~---~~~~v~~~~-g~~--~~~l~l~~H~DtV 79 (395)
T TIGR03526 8 AEKYRGDMIRFLRDLVAIPSES--GDEGRVALRIKQEMEKLGFDKVEID---PMGNVLGYI-GHG--PKLIAMDAHIDTV 79 (395)
T ss_pred HHHHHHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCceEEEc---CCCcEEEEe-CCC--CCEEEEEeecccc
Confidence 3456689999999999999986 7888999999999999999854332 345899987 442 3789999999999
Q ss_pred CCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcccc
Q 013216 103 PSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (447)
Q Consensus 103 p~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (447)
|+++ +.|+++||.+.++ ||++||||++|||++++++|.|++.|.+.+..++.++.|+++++||.++..|...+++++.
T Consensus 80 p~~~~~~W~~~Pf~~~~~-~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~ 158 (395)
T TIGR03526 80 GIGDMDQWQFDPYEGYED-EEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDK 158 (395)
T ss_pred CCCCcccccCCCCceEEE-CCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccC
Confidence 9976 7899999999997 9999999999999999999999999999887677899999999999532246777776654
Q ss_pred ccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccc
Q 013216 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (447)
Q Consensus 182 ~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 260 (447)
+. .|++++. +|+. ..+..+++|..+++|+++|+++|++.|+.| ||+..+++++..|+.+.... .. ..
T Consensus 159 ~~-~d~~i~~-----ep~~-~~i~~g~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~----~~-~~ 226 (395)
T TIGR03526 159 IK-PEFVVIT-----EPTD-MNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANL----VE-DP 226 (395)
T ss_pred CC-CCEEEec-----CCCC-ceEEEEcceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhh----cC-Cc
Confidence 43 5777664 4654 578899999999999999999999999999 99999999999998754311 00 00
Q ss_pred cCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccc--cccc-
Q 013216 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQ--RASL- 337 (447)
Q Consensus 261 ~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~--~~~~- 337 (447)
.....+++++.+++|.. ..|+||++|++.+|+|+.|.++.+++.++|+++++......+++ +.. .+..
T Consensus 227 -~~~~~~~~v~~i~~g~~-----~~nviP~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~ 297 (395)
T TIGR03526 227 -FLGKGTLTVSEIFFSSP-----SRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQGAEAEVE---MYEYDRPSYT 297 (395)
T ss_pred -ccCccceeeeeeecCCC-----CCCccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHhcCCcceEE---Eecccccccc
Confidence 11125888898886632 78999999999999999999999999999998876322223333 211 0000
Q ss_pred ----cccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcch-HHHHHcCCCeEEEccCCCCCCCCCCCCccc
Q 013216 338 ----HDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDA-RYFRERGLPAIGFSPMANTPILLHDHNEFL 412 (447)
Q Consensus 338 ----~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~-~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v 412 (447)
......|++ .++.++|+++++.+++++.++..+.....++++|+ .++++.|+|++.|||+... .+|++||++
T Consensus 298 ~~~~~~~~~~p~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~p~v~~Gpg~~~--~aH~~dE~i 374 (395)
T TIGR03526 298 GLVYPTECYFPTW-VLPEDHLITKAALETYKRLFGKEPGVDKWTFSTNGVSIMGRHGIPVIGFGPGDED--QAHAPNEKT 374 (395)
T ss_pred ccccccccccCcc-ccCCCCHHHHHHHHHHHHHhCCCCceeeeeeecccceehhhcCCCEEEECCcchh--hccCCCceE
Confidence 001123443 46778999999999999987654344455677787 4667789999999998643 699999999
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 013216 413 NQAEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 413 ~~~~l~~~~~~~~~~l~~l~ 432 (447)
+++++.+++++|..++..++
T Consensus 375 ~i~~l~~~~~~~~~~~~~~~ 394 (395)
T TIGR03526 375 WKEDLVKAAAMYAAIPTVYL 394 (395)
T ss_pred EHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999875
|
SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types. |
| >TIGR03320 ygeY M20/DapE family protein YgeY | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-54 Score=429.44 Aligned_cols=377 Identities=16% Similarity=0.169 Sum_probs=296.7
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCC
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp 103 (447)
+...+++++++++|++|||+| ++|.+++++|.++|+++|++...++ .+.|+++.+ |. +.|+|+|+|||||||
T Consensus 9 ~~~~~~~~~~~~~lv~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~---~~~n~~~~~-g~--~~~~l~l~~H~DtVp 80 (395)
T TIGR03320 9 KKYRGDMIRFLRDLVAIPSES--GDEKRVAERIKEEMEKLGFDKVEID---PMGNVLGYI-GH--GPKLIAMDAHIDTVG 80 (395)
T ss_pred HHHHHHHHHHHHHHHcCCCCC--CchHHHHHHHHHHHHHhCCcEEEEC---CCCCEEEEe-CC--CCcEEEEEecccccC
Confidence 446688999999999999985 7788999999999999999753332 345899987 43 237899999999999
Q ss_pred CCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccc
Q 013216 104 SEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF 182 (447)
Q Consensus 104 ~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 182 (447)
+++ ..|+++||.+.++ ||++||||++|||++++++|.|++.|.+.+..++++|.|+++++||.++..+.+.++++..+
T Consensus 81 ~~~~~~w~~~Pf~~~~~-~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~~ 159 (395)
T TIGR03320 81 IGDSKQWQFDPYEGYED-EEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDGI 159 (395)
T ss_pred CCCccccccCCCceEEE-CCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcCC
Confidence 976 7899999999997 99999999999999999999999999998877788999999999997542345666655434
Q ss_pred cCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhcccc
Q 013216 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKA 261 (447)
Q Consensus 183 ~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~ 261 (447)
. .|++++. +|+. ..++.+++|..+++|+++|+++|+|.|+.| ||+..+++++..|+.+.... . ...
T Consensus 160 ~-~d~~iv~-----ep~~-~~i~~g~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~----~--~~~ 226 (395)
T TIGR03320 160 K-PEFVVIT-----EPTD-MNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANL----V--EDP 226 (395)
T ss_pred C-CCEEEEc-----CCCc-cceEEecceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhh----c--CCc
Confidence 3 5777765 4654 578899999999999999999999999999 99999999999998754211 0 000
Q ss_pred CCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccc--cccc--
Q 013216 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQ--RASL-- 337 (447)
Q Consensus 262 ~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~--~~~~-- 337 (447)
.....+++++.+.+|.. ..|+||++|++.+|+|+.|.++.+++.++|++++......++++ +.. .+..
T Consensus 227 ~~~~~t~~v~~i~~g~~-----~~NviP~~~~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~ 298 (395)
T TIGR03320 227 FLGKGTLTVSEIFFSSP-----SRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQGAEAKVE---MYNYDRPSYTG 298 (395)
T ss_pred ccCcCceeeeeeecCCC-----CcCccCCEEEEEEEEecCCCCCHHHHHHHHHHHHhhcCCCceEe---eeccCcccccc
Confidence 11124788888886632 78999999999999999999999999999998875322223333 210 0000
Q ss_pred ---cccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcch-HHHHHcCCCeEEEccCCCCCCCCCCCCcccc
Q 013216 338 ---HDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDA-RYFRERGLPAIGFSPMANTPILLHDHNEFLN 413 (447)
Q Consensus 338 ---~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~-~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~ 413 (447)
......|++ .++.++|+++.+.+++++..+..+.....++++|+ .++...|+|++.|||+... ++|++|||++
T Consensus 299 ~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~p~v~~Gpg~~~--~aH~~nE~v~ 375 (395)
T TIGR03320 299 LVYPTECYFPTW-VLPEDHLITKAALETYKRLFGKEPGVDKWTFSTNGVSIMGRHGIPVIGFGPGDED--QAHAPNEKTW 375 (395)
T ss_pred cccccccccCcc-ccCCCCHHHHHHHHHHHHHhCCCCceeecceecccceehhhcCCCEEEECCCchh--hccCCCcEEE
Confidence 000123433 46778999999999999986654344455677787 5777889999999998653 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013216 414 QAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 414 ~~~l~~~~~~~~~~l~~l~~ 433 (447)
++++.+++++|..++..++.
T Consensus 376 i~~l~~~~~~~~~~~~~~~~ 395 (395)
T TIGR03320 376 KEDLVRAAAMYAAIPTVYLE 395 (395)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999998863
|
Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown. |
| >PRK07338 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-54 Score=431.54 Aligned_cols=366 Identities=18% Similarity=0.250 Sum_probs=296.9
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecC--------------CCCeEEEEecCC
Q 013216 22 SPAKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAK--------------NKPLILLKWPGS 86 (447)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~ips~s~~-~~e~~~~~~i~~~l~~~G~~~~~~~~~~--------------~~~nl~~~~~g~ 86 (447)
+.+.+.+++++.|.+|++|||.|.. ..+.++++||.++|+++|++++..+..+ ..+||++++++.
T Consensus 11 ~~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~~~ 90 (402)
T PRK07338 11 LIDDRQAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPALHVSVRPE 90 (402)
T ss_pred HHhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeEEEEECCC
Confidence 3456789999999999999998632 1246899999999999999988654221 226999998654
Q ss_pred CCCCCeEEEeeccccCCCCCCCCCcCCCcee--eCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecC
Q 013216 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAH--LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164 (447)
Q Consensus 87 ~~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~--~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~ 164 (447)
. .++|+|+|||||||+++ +||++. ++ ||+|||||++|||++++++|.|++.|.+.+.+++++|.|+|+++
T Consensus 91 ~--~~~lll~gH~DvVp~~~-----~Pf~~~~~~~-~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~d 162 (402)
T PRK07338 91 A--PRQVLLTGHMDTVFPAD-----HPFQTLSWLD-DGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLINPD 162 (402)
T ss_pred C--CccEEEEeecCccCCCC-----CcccCCeEee-CCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEECC
Confidence 2 35799999999999863 799986 76 99999999999999999999999999988877788999999999
Q ss_pred cccCcccCHHHHHccccccCCceEEEEecCCcCcCC-cceeEeeeeeeEEEEEEEeecCCccCC-CCCC-CHHHHHHHHH
Q 013216 165 EEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE-DYRAFYAERCPWWLVIKARGAPGHGAK-LYDN-SAMENLFKSI 241 (447)
Q Consensus 165 EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~-~~~i~~~~~G~~~~~i~v~G~~~Hs~~-p~~g-nai~~~~~~i 241 (447)
||+|+ .|++.++++... ..+++++++ |+. ...+..+++|..+++|+++|+++|+|. |+.| ||+..+++++
T Consensus 163 EE~g~-~g~~~~~~~~~~-~~~~~i~~e-----p~~~~~~v~~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~~i 235 (402)
T PRK07338 163 EEIGS-PASAPLLAELAR-GKHAALTYE-----PALPDGTLAGARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAAELA 235 (402)
T ss_pred cccCC-hhhHHHHHHHhc-cCcEEEEec-----CCCCCCcEEeecceeEEEEEEEEeEcccCCCCcccCccHHHHHHHHH
Confidence 99986 689988886432 346777775 332 246778899999999999999999996 7888 9999999999
Q ss_pred HHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC-
Q 013216 242 ESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA- 320 (447)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~- 320 (447)
..|+.+... ...++++++.+++|. ..|+||++|++.+|+|+.|.++.+++.++|+++++..
T Consensus 236 ~~l~~l~~~------------~~~~t~~vg~i~gG~------~~nvVP~~a~~~~d~R~~~~~~~~~v~~~i~~~~~~~~ 297 (402)
T PRK07338 236 LALHALNGQ------------RDGVTVNVAKIDGGG------PLNVVPDNAVLRFNIRPPTPEDAAWAEAELKKLIAQVN 297 (402)
T ss_pred HHHHhhhcc------------CCCcEEEEEEEecCC------CCceeccccEEEEEeccCCHHHHHHHHHHHHHHHhccc
Confidence 999775421 123589999999886 8999999999999999999999999999999998743
Q ss_pred -CCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeE-EEccC
Q 013216 321 -SRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAI-GFSPM 398 (447)
Q Consensus 321 -~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~-~~gp~ 398 (447)
..+++++ +.. ....|++.....+.++++.++++.++.+... ....++|++|++++...|+|++ .|||+
T Consensus 298 ~~~~~~~~---~~~------~~~~~p~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~g~tDa~~~~~~giP~v~~~Gpg 367 (402)
T PRK07338 298 QRHGVSLH---LHG------GFGRPPKPIDAAQQRLFEAVQACGAALGLTI-DWKDSGGVCDGNNLAAAGLPVVDTLGVR 367 (402)
T ss_pred cCCCeEEE---EEc------cccCCCCCCCcchHHHHHHHHHHHHHcCCCc-ccccCCccchHHHHhhcCCCeEeccCCC
Confidence 3455555 331 1233443223344589999999988876554 4456779999999999999999 79998
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 399 ANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 399 ~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
.. ..|++|||++++++.+++++|+.++..++.
T Consensus 368 ~~---~~H~~~E~v~i~~l~~~~~~~~~~l~~~~~ 399 (402)
T PRK07338 368 GG---NIHSEDEFVILDSLVERAQLSALILMRLAQ 399 (402)
T ss_pred CC---CCCCccceEehhhHHHHHHHHHHHHHHHhc
Confidence 54 589999999999999999999999998753
|
|
| >PRK06133 glutamate carboxypeptidase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=426.43 Aligned_cols=367 Identities=17% Similarity=0.237 Sum_probs=295.0
Q ss_pred CChhHHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecC-CCCeEEEEecCCCCCCCeEEEeeccccC
Q 013216 25 KSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAK-NKPLILLKWPGSNPQLPSILLNSHTDVV 102 (447)
Q Consensus 25 ~~~~~~~~~l~~l~~ips~s~~-~~e~~~~~~i~~~l~~~G~~~~~~~~~~-~~~nl~~~~~g~~~~~~~ill~~H~Dtv 102 (447)
.+.++++++|++|++|||+|+. .++.++++||.++|+++|++++..+..+ ..+||+++++|++ .|+|+|+||||||
T Consensus 34 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~--~~~ill~~H~D~V 111 (410)
T PRK06133 34 QEQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTG--KRRIMLIAHMDTV 111 (410)
T ss_pred HhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCC--CceEEEEeecCcc
Confidence 4667899999999999999743 2245899999999999999988665422 3579999997653 4899999999999
Q ss_pred CCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccc
Q 013216 103 PSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF 182 (447)
Q Consensus 103 p~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 182 (447)
|++ ..|+.+||. .+ +|++||||++|||++++++|.|++.|.+.+.+++++|.|+|+++||.|+ .|++.++++..
T Consensus 112 p~~-~~w~~~Pf~--~~-~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~G~~~~~~~~~- 185 (410)
T PRK06133 112 YLP-GMLAKQPFR--ID-GDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGS-PGSRELIAELA- 185 (410)
T ss_pred CCC-CccCCCCEE--EE-CCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCC-ccHHHHHHHHh-
Confidence 986 459999996 65 9999999999999999999999999999887778999999999999986 69999997643
Q ss_pred cCCceEEEEecCCcCcCCc-ceeEeeeeeeEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhcc
Q 013216 183 NSLNVGIVLDEGLASTTED-YRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (447)
Q Consensus 183 ~~~~~~~~~d~g~~~p~~~-~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~ 259 (447)
.+.|.+++++ |+.. ..++.+++|..+++|+++|+++|+| .|+.| ||+..+++++..|+.+...
T Consensus 186 ~~~d~~i~~e-----p~~~~~~v~~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~~~--------- 251 (410)
T PRK06133 186 AQHDVVFSCE-----PGRAKDALTLATSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLGDP--------- 251 (410)
T ss_pred ccCCEEEEeC-----CCCCCCCEEEeccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhccCC---------
Confidence 3457777775 3322 3578899999999999999999985 69988 9999999999988765321
Q ss_pred ccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc-CCCCceEeecccccccccc
Q 013216 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFELGQFKQRASLH 338 (447)
Q Consensus 260 ~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~ 338 (447)
...++++++.+++|. ..|+||++|++.+|+|+.|.++.+++.++|+++++. ...+.+++ ++.
T Consensus 252 ---~~~~t~~~~~i~gG~------~~nvIP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~~~~---~~~----- 314 (410)
T PRK06133 252 ---AKGTTLNWTVAKAGT------NRNVIPASASAQADVRYLDPAEFDRLEADLQEKVKNKLVPDTEVT---LRF----- 314 (410)
T ss_pred ---CCCeEEEeeEEECCC------CCceeCCccEEEEEEEECCHHHHHHHHHHHHHHHhccCCCCeEEE---EEe-----
Confidence 123578999999886 899999999999999999999999999999999874 22344555 331
Q ss_pred ccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCc--eecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHH
Q 013216 339 DKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKP--EIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAE 416 (447)
Q Consensus 339 ~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~ 416 (447)
...+|++.....+.++++.++++.++.+... .+ ..++|++|+++++..|+|++.+|++..+ .+.|++||++++++
T Consensus 315 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~g~tDa~~~~~~gip~v~~g~G~~~-~~aH~~nE~i~i~~ 391 (410)
T PRK06133 315 -ERGRPPLEANAASRALAEHAQGIYGELGRRL-EPIDMGTGGGTDAAFAAGSGKAAVLEGFGLVG-FGAHSNDEYIELNS 391 (410)
T ss_pred -ccccCCcccCcchHHHHHHHHHHHHHcCCCc-cccccCCCCCchHHHHHhcCCCceEecccCCC-CCCCCCCcEEEccc
Confidence 1234443223334578888888887765543 22 4567999999999999998874433221 26999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013216 417 YLKGIDIYESIIKAYAS 433 (447)
Q Consensus 417 l~~~~~~~~~~l~~l~~ 433 (447)
+.+++++|..++.++++
T Consensus 392 ~~~~~~~~~~~~~~~~~ 408 (410)
T PRK06133 392 IVPRLYLLTRMIMELSR 408 (410)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998875
|
|
| >PRK07473 carboxypeptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=421.00 Aligned_cols=362 Identities=15% Similarity=0.232 Sum_probs=291.5
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCCChh---HHHHHHHHHHHHCCCceEEEeecCCC-CeEEEEecCCCCCCCeEEEeec
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQPNPDYT---NASKFILAQAEALSLESQTLEFAKNK-PLILLKWPGSNPQLPSILLNSH 98 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s~~~~e~---~~~~~i~~~l~~~G~~~~~~~~~~~~-~nl~~~~~g~~~~~~~ill~~H 98 (447)
...+.++++++|++|++|||.+ +++. ++++|+.++|+++|++++.++..++. +|+++.+++.+++.|+|+|+||
T Consensus 6 ~~~~~~~~~~~l~~Lv~i~S~s--~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH 83 (376)
T PRK07473 6 LPFDSEAMLAGLRPWVECESPT--WDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGH 83 (376)
T ss_pred CCcCHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEec
Confidence 4556889999999999999986 4444 66779999999999999876543332 5899998654334589999999
Q ss_pred cccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHc
Q 013216 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD 178 (447)
Q Consensus 99 ~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~ 178 (447)
|||||+. ..|+.+||. ++ ||++||||++|||++++++|.|+++|.+.+..++.+|.|+|+++||+|+ .|++.+++
T Consensus 84 ~DtV~~~-~~~~~~p~~--~~-~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~-~g~~~~~~ 158 (376)
T PRK07473 84 MDTVHPV-GTLEKLPWR--RE-GNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGT-PSTRDLIE 158 (376)
T ss_pred CCCCCCC-CCccCCCeE--EE-CCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCC-ccHHHHHH
Confidence 9999875 369999994 75 8999999999999999999999999999887777899999999999986 69999998
Q ss_pred cccccCCceEEEEecCCcCcCC-cceeEeeeeeeEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhHHHH
Q 013216 179 SHVFNSLNVGIVLDEGLASTTE-DYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLV 255 (447)
Q Consensus 179 ~~~~~~~~~~~~~d~g~~~p~~-~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~~~~~~~~~~ 255 (447)
++.. ..|++++.+ |+. ...++.+++|..+++|+++|+++|+| .|+.| ||+..+++++.+|+.+..
T Consensus 159 ~~~~-~~d~~iv~e-----p~~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~------ 226 (376)
T PRK07473 159 AEAA-RNKYVLVPE-----PGRPDNGVVTGRYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT------ 226 (376)
T ss_pred Hhhc-cCCEEEEeC-----CCCCCCCEEEECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC------
Confidence 6433 357888875 443 23689999999999999999999986 58988 999999999999876532
Q ss_pred HhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccc
Q 013216 256 KAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRA 335 (447)
Q Consensus 256 ~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 335 (447)
..++++++.|++|. ..|+||++|++.+++|.......+++.+++.+.+. ...+++++ +..
T Consensus 227 --------~~~~~~vg~i~gg~------~~n~VP~~~~~~~d~r~~~~~~~~~~~~~i~~~~~-~~~~~~~~---~~~-- 286 (376)
T PRK07473 227 --------EDCTFSVGIVHGGQ------WVNCVATTCTGEALSMAKRQADLDRGVARMLALSG-TEDDVTFT---VTR-- 286 (376)
T ss_pred --------CCceEeEeeEEcCC------CCcCCCCceEEEEEEEeCCHhHHHHHHHHHHHhhC-cCCCeEEE---EEc--
Confidence 12488999999887 89999999999999999887788887777766655 22345555 331
Q ss_pred cccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEE-EccCCCCCCCCCCCCccccH
Q 013216 336 SLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIG-FSPMANTPILLHDHNEFLNQ 414 (447)
Q Consensus 336 ~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~-~gp~~~~~~~~H~~~E~v~~ 414 (447)
....|++.....+.++++.++++.+..+.+. ....++|+||+++++..|+|++. |||++. ..|++|||+++
T Consensus 287 ----~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~g~tDa~~~~~~giP~v~g~Gpg~~---~~H~~dE~v~i 358 (376)
T PRK07473 287 ----GVTRPVWEPDAGTMALYEKARAIAGQLGLSL-PHGSAGGGSDGNFTGAMGIPTLDGLGVRGA---DYHTLNEHIEV 358 (376)
T ss_pred ----cccCCCCCCChhHHHHHHHHHHHHHHcCCCC-ccccCccccHhhhHHhcCCCEEEeccCCCC---CCCCCCceEec
Confidence 1234444222333478889888877777654 44566789999999999999995 999864 58999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013216 415 AEYLKGIDIYESIIKAY 431 (447)
Q Consensus 415 ~~l~~~~~~~~~~l~~l 431 (447)
+++.+++++|++++..+
T Consensus 359 ~~l~~~~~vl~~~l~~~ 375 (376)
T PRK07473 359 DSLAERGRLMAGLLATL 375 (376)
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 99999999999998754
|
|
| >PRK09104 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=431.70 Aligned_cols=393 Identities=20% Similarity=0.240 Sum_probs=302.6
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCC----ChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeec
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s~~~----~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H 98 (447)
.+.+.++++++|++|++|||+|+.. ++.+++++|.++|+++|++++.++.. +++||+++++|.+++.|+|+|+||
T Consensus 12 ~~~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~-~~~~l~a~~~g~~~~~~~lll~gH 90 (464)
T PRK09104 12 IDANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTP-GHPMVVAHHEGPTGDAPHVLFYGH 90 (464)
T ss_pred HHHhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCEEEEEecCCCCCCCEEEEEec
Confidence 3557889999999999999998432 24688999999999999999876643 778999999875455699999999
Q ss_pred cccCCCCC-CCCCcCCCceeeCCCC-----cEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccC
Q 013216 99 TDVVPSEP-SKWSHHPFGAHLDSQG-----NIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (447)
Q Consensus 99 ~Dtvp~~~-~~W~~~Pf~~~~~~~g-----~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (447)
+||||+++ +.|+++||++.++ ++ +|||||++|||++++++|.|++.|++.+..++++|.|+|+++||+|+ .|
T Consensus 91 ~DvVp~~~~~~W~~~Pf~~~~~-~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g 168 (464)
T PRK09104 91 YDVQPVDPLDLWESPPFEPRIK-ETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEEESGS-PS 168 (464)
T ss_pred ccCCCCCCcccCCCCCCcceEe-cCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccCC-cc
Confidence 99999987 7799999999997 75 59999999999999999999999999776678899999999999987 58
Q ss_pred HHHHHcccc-ccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEee--cCCccCC-CCCC-CHHHHHHHHHHHHHhc
Q 013216 173 AEKFADSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAK-LYDN-SAMENLFKSIESVRRF 247 (447)
Q Consensus 173 ~~~~~~~~~-~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G--~~~Hs~~-p~~g-nai~~~~~~i~~l~~~ 247 (447)
+..++.+.. ....|++++.+.+...+. ...++.++||..+++|+++| +++|+|. |+.+ ||+..+++++.+|.+.
T Consensus 169 ~~~~l~~~~~~~~~d~~iv~E~~~~~~~-~~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~~l~~l~~~ 247 (464)
T PRK09104 169 LVPFLEANAEELKADVALVCDTGMWDRE-TPAITTSLRGLVGEEVTITAADRDLHSGLFGGAAANPIRVLTRILAGLHDE 247 (464)
T ss_pred HHHHHHhhHHhcCCCEEEEeCCCCCCCC-CeEEEeecCCeEEEEEEEEeCCCCccccccCCccCCHHHHHHHHHHhccCC
Confidence 888776532 123588888875543222 35788999999999999999 6899997 5677 9999999999998763
Q ss_pred hhh-------------------hHHH--------HHh-cccc------------CCCcceeeeeeeecCCCCCCCccccc
Q 013216 248 RAS-------------------QFDL--------VKA-GLKA------------EGEVVSVNMAFLKAGTPSPNGFVMNL 287 (447)
Q Consensus 248 ~~~-------------------~~~~--------~~~-~~~~------------~~~~~t~~~~~i~~g~~~~~~~~~n~ 287 (447)
... .++. +.. +... ....+|++++.+++|.. ++...|+
T Consensus 248 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~--~~~~~nv 325 (464)
T PRK09104 248 TGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGRSVLEQIWSRPTCEINGIWGGYT--GEGFKTV 325 (464)
T ss_pred CCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccHHHHHHHhhCCeEEEeccccCCC--CCCCccE
Confidence 110 0000 000 0000 01136889999988752 2236799
Q ss_pred cCCceEEEEeeecCCCCCHHHHHHHHHHHhccC-CCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHh
Q 013216 288 QPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA-SRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKA 366 (447)
Q Consensus 288 iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~ 366 (447)
||++|++.+|+|++|.++.+++.++|+++++.. ....+++ +.. ....|++ .++.++++++.+.+++++.
T Consensus 326 vP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~~~~~~~v~---~~~------~~~~~~~-~~~~~~~~v~~l~~~~~~~ 395 (464)
T PRK09104 326 IPAEASAKVSFRLVGGQDPAKIREAFRAYVRARLPADCSVE---FHD------HGGSPAI-ALPYDSPALAAAKAALSDE 395 (464)
T ss_pred ecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEE---EEe------cCCCCce-ECCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988632 1234444 321 1233443 4677899999999999987
Q ss_pred cCCCCCceecCCCc-chHHHH-HcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013216 367 NGKLGKPEIFPAST-DARYFR-ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 367 ~~~~~~~~~~~g~~-D~~~~~-~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~ 432 (447)
.+..+.....+|++ |++.|. ..|+|++.|||+... ..+|++||+++++++.+++++|.+++..++
T Consensus 396 ~~~~~~~~~~~g~~~~~~~~~~~~gip~v~~g~G~~~-~~aH~~nE~i~i~~l~~~~~~~~~ll~~~~ 462 (464)
T PRK09104 396 WGKPAVLIGSGGSIPIVGDFKRILGMDSLLVGFGLDD-DRIHSPNEKYDLESFHKGIRSWARILAALA 462 (464)
T ss_pred hCCCceecCCCCcHHHHHHHHHHhCCCEEEecCCCCC-CCCcCCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence 65542333333333 355554 469999999987432 369999999999999999999999998875
|
|
| >PRK08262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=431.70 Aligned_cols=384 Identities=25% Similarity=0.353 Sum_probs=293.9
Q ss_pred CChhHHHHHHHhhhcccCCCCCCCh-------hHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEee
Q 013216 25 KSDDSIIERFRAYLQIDTSQPNPDY-------TNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (447)
Q Consensus 25 ~~~~~~~~~l~~l~~ips~s~~~~e-------~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~ 97 (447)
.+.++++++|++|++|||+|+..+. .++++||.++|+.+|+.++..+.. + +|+++.++|.+++.++|+|+|
T Consensus 41 ~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~-~-~~vv~~~~g~~~~~~~ill~g 118 (486)
T PRK08262 41 VDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVG-G-HSLLYTWKGSDPSLKPIVLMA 118 (486)
T ss_pred CCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEEC-C-ccEEEEEECCCCCCCeEEEEC
Confidence 4788999999999999999853322 257888888888899988766543 3 588888887655558999999
Q ss_pred ccccCCCCC---CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHH
Q 013216 98 HTDVVPSEP---SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (447)
Q Consensus 98 H~Dtvp~~~---~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (447)
||||||+++ ..|+++||+++++ ||+|||||++|||++++++|.|++.|++.+..++++|+|+|+++||+|+ .|++
T Consensus 119 H~DvVp~~~~~~~~W~~~Pf~~~~~-dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~-~G~~ 196 (486)
T PRK08262 119 HQDVVPVAPGTEGDWTHPPFSGVIA-DGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGG-LGAR 196 (486)
T ss_pred cccccCCCCCCcccCccCCCceEee-CCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCC-cCHH
Confidence 999999974 5799999999997 9999999999999999999999999999887788999999999999987 5999
Q ss_pred HHHccccccCCceEEEEecCC----------cCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHH
Q 013216 175 KFADSHVFNSLNVGIVLDEGL----------ASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESV 244 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~d~g~----------~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l 244 (447)
.+++.....+.+..++++.+. .+|+ ..+..++||..+++|+++|+++|+|.|+..||+..++++|..|
T Consensus 197 ~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~--~~i~~~~kG~~~~~i~v~G~~~Hss~p~~~nai~~l~~~l~~l 274 (486)
T PRK08262 197 AIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPV--ALIGVAEKGYATLELTARATGGHSSMPPRQTAIGRLARALTRL 274 (486)
T ss_pred HHHHHHHHhcCCEEEEEeCCceecccccCCCCceE--EeeEEeeeeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 888642211122233333221 1232 2567789999999999999999999986679999999999999
Q ss_pred Hhchhh---------hHHHHHh---------------------------ccccCCCcceeeeeeeecCCCCCCCcccccc
Q 013216 245 RRFRAS---------QFDLVKA---------------------------GLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQ 288 (447)
Q Consensus 245 ~~~~~~---------~~~~~~~---------------------------~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~i 288 (447)
+.+... .++.+.. ........+|++++.|++|. ..|+|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG~------~~NvI 348 (486)
T PRK08262 275 EDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGSP------KDNVL 348 (486)
T ss_pred hhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecCC------ccccC
Confidence 874210 1110100 00001124688999999886 88999
Q ss_pred CCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcC
Q 013216 289 PSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANG 368 (447)
Q Consensus 289 P~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~ 368 (447)
|++|++.+|+|++|.++.+++.++|+++++.. +++++ +.. ....|++ ..+.++++++.+++++++.++
T Consensus 349 P~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~--~~~v~---~~~------~~~~~~~-~~~~~~~lv~~l~~a~~~~~g 416 (486)
T PRK08262 349 PQRATATVNFRILPGDSVESVLAHVRRAVADD--RVEIE---VLG------GNSEPSP-VSSTDSAAYKLLAATIREVFP 416 (486)
T ss_pred CCccEEEEEEEeCCCCCHHHHHHHHHHHhccC--ceEEE---Eec------CCCCCCC-CCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999888743 44444 321 1223333 356789999999999999876
Q ss_pred C-CCCceecCCCcchHHHHHcCCCe-----EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhh
Q 013216 369 K-LGKPEIFPASTDARYFRERGLPA-----IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 369 ~-~~~~~~~~g~~D~~~~~~~g~p~-----~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
. ...+..+.|+||+++|...+.++ +.|||+.. ...|++||+++++++.+++++|..++..++++
T Consensus 417 ~~~~~~~~~~g~tDa~~~~~~~p~~~~~~~~~~gpg~~--~~~Ht~dE~i~i~~l~~~~~i~~~~l~~~~~~ 486 (486)
T PRK08262 417 DVVVAPYLVVGATDSRHYSGISDNVYRFSPLRLSPEDL--ARFHGTNERISVANYARMIRFYYRLIENAAGL 486 (486)
T ss_pred CCccccceecccccHHHHHHhcCCeEEECCccCCcccc--cCCCCCCCceeHHHHHHHHHHHHHHHHHhhcC
Confidence 3 22334567899999998764333 34555433 26899999999999999999999999988753
|
|
| >PRK07907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=427.04 Aligned_cols=389 Identities=19% Similarity=0.232 Sum_probs=297.1
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCC----CChhHHHHHHHHHHHHCCC-ceEEEeecCCCCeEEEEecCCCCCCCeEEEe
Q 013216 22 SPAKSDDSIIERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSL-ESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (447)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~ips~s~~----~~e~~~~~~i~~~l~~~G~-~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~ 96 (447)
..+.+.++++++|++|++|||+|+. .++.+++++|.++|+++|+ +++.++ .++++|+++.+++.. +.|+|+|+
T Consensus 12 ~i~~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~nl~a~~~~~~-~~~~lll~ 89 (449)
T PRK07907 12 RVAELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVS-ADGAPAVIGTRPAPP-GAPTVLLY 89 (449)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEe-cCCCCEEEEEecCCC-CCCEEEEE
Confidence 3456788999999999999999853 2467899999999999998 677665 347889999997643 35899999
Q ss_pred eccccCCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHH
Q 013216 97 SHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (447)
Q Consensus 97 ~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (447)
||+||||+++ +.|+++||++.++ ||+|||||++|||++++++|.|++.| +.+++++|.|+++++||+|+ .|+++
T Consensus 90 gH~DvVp~~~~~~W~~~Pf~~~~~-~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~-~g~~~ 164 (449)
T PRK07907 90 AHHDVQPPGDPDAWDSPPFELTER-DGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGS-PSLER 164 (449)
T ss_pred cccCCCCCCCccccCCCCceeEEE-CCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCC-ccHHH
Confidence 9999999976 6899999999997 99999999999999999999999998 34567899999999999987 69999
Q ss_pred HHcccc-ccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEe--ecCCccCCC-CCC-CHHHHHHHHHHHHHhchhh
Q 013216 176 FADSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKAR--GAPGHGAKL-YDN-SAMENLFKSIESVRRFRAS 250 (447)
Q Consensus 176 ~~~~~~-~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~--G~~~Hs~~p-~~g-nai~~~~~~i~~l~~~~~~ 250 (447)
++++.. ..+.|++++.|.+.... +.+.++.++||..+++++++ |+++|+|.| ..+ ||+..+++++.+|.+....
T Consensus 165 ~l~~~~~~~~~d~~iv~E~~~~~~-~~p~i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l~~~~~~ 243 (449)
T PRK07907 165 LLAEHPDLLAADVIVIADSGNWSV-GVPALTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATLHDEDGN 243 (449)
T ss_pred HHHhchHhhcCCEEEEecCCcCCC-CCeEEEEecCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhhCCCCCC
Confidence 988642 22357788887543211 12368899999999999998 889999975 445 9999999999999764210
Q ss_pred ----------hH-----H--HHHh--cc-------------ccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEee
Q 013216 251 ----------QF-----D--LVKA--GL-------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298 (447)
Q Consensus 251 ----------~~-----~--~~~~--~~-------------~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~ 298 (447)
.+ + .... +. ......++++++.|++|. ++.+.|+||++|++.+|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~---~g~~~nvIP~~a~~~~di 320 (449)
T PRK07907 244 VAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPP---VAGASNALPPSARARLSL 320 (449)
T ss_pred EeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCC---CCCCCCEecCceEEEEEE
Confidence 00 0 0000 00 000124688888888753 344889999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHhccCCC-CceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecC
Q 013216 299 RVPPTTDAESLERRIVEEWAPASR-NMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFP 377 (447)
Q Consensus 299 R~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (447)
|+.|.++.+++.+.|+++++.... +.+++ ++. .....|. .++.++|+++.+.+++++..+..+.....+
T Consensus 321 R~~p~~~~e~v~~~l~~~l~~~~~~~~~~~---~~~-----~~~~~p~--~~~~~~~~~~~l~~a~~~~~g~~~~~~~~~ 390 (449)
T PRK07907 321 RVAPGQDAAEAQDALVAHLEAHAPWGAHVT---VER-----GDAGQPF--AADASGPAYDAARAAMREAWGKDPVDMGMG 390 (449)
T ss_pred EcCCCCCHHHHHHHHHHHHHhcCCCCcEEE---EEE-----CCCcCce--eCCCCCHHHHHHHHHHHHHhCCCceecCCC
Confidence 999999999999999988874322 34444 331 0133444 356689999999999999866542333334
Q ss_pred CCcc-hHHHHH-c-CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013216 378 ASTD-ARYFRE-R-GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 378 g~~D-~~~~~~-~-g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~ 432 (447)
|+++ ...|.+ . ++|++.|||+... .++|++||+++++++.+++++|+.++..+.
T Consensus 391 g~~~~~~~~~~~~~~~~~v~~Gpg~~~-~~aH~~nE~i~i~~l~~~~~~~~~~l~~~~ 447 (449)
T PRK07907 391 GSIPFIAELQEAFPQAEILVTGVEDPK-TRAHSPNESVHLGELERAAVAEALLLARLA 447 (449)
T ss_pred CcHHHHHHHHHhcCCCcEEEeccCCCC-CCCcCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 4433 233433 3 4789999998632 268999999999999999999999999884
|
|
| >PRK08737 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=412.35 Aligned_cols=353 Identities=20% Similarity=0.238 Sum_probs=273.8
Q ss_pred hhHHHHHHHhhhcccCCCCC--CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPN--PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~--~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~ 104 (447)
.++++++|++|++|||.++. .++.++++++.++|+ |++++.++...+++|+++.. | .|+|+|+||+||||+
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~-g----~~~lll~gH~DtVp~ 77 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVR-G----TPKYLFNVHLDTVPD 77 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEc-C----CCeEEEEeeeCCCCC
Confidence 45789999999999998753 347899999999996 99888766555778999863 3 278999999999999
Q ss_pred CCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccC
Q 013216 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (447)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (447)
++ .|+++||.+.++ ||+|||||++|||++++++|.|++. +.++|.|+|++|||.|+..|++.+++.+. +
T Consensus 78 ~~-~w~~~Pf~~~~~-~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~--~ 146 (364)
T PRK08737 78 SP-HWSADPHVMRRT-DDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAFLFSSDEEANDPRCVAAFLARGI--P 146 (364)
T ss_pred CC-CCCCCCCceEEE-CCEEEEECcccchHHHHHHHHHHHc-------cCCCEEEEEEcccccCchhhHHHHHHhCC--C
Confidence 74 799999999997 9999999999999999999999863 35799999999999986469888888653 3
Q ss_pred CceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCC-CCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccC
Q 013216 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (447)
Q Consensus 185 ~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p-~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 262 (447)
.+++++. +|+. ..++.++||..+++|+++|+++|+|.| +.| |||..+++++.++.++.... ..... ..
T Consensus 147 ~~~~iv~-----Ept~-~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~---~~~~~-~~ 216 (364)
T PRK08737 147 YEAVLVA-----EPTM-SEAVLAHRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESL---AHARF-GG 216 (364)
T ss_pred CCEEEEc-----CCCC-ceeEEecceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhh---hhhcc-CC
Confidence 4666654 6775 678999999999999999999999998 478 99999999988765432111 00000 01
Q ss_pred CCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCC
Q 013216 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFG 342 (447)
Q Consensus 263 ~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (447)
...++++++.+++|. +.|+||++|++.+|+|+.|.++.+++.++|+++++.. .+.++ +... ...
T Consensus 217 ~~~~t~~vg~i~GG~------~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~~~~~--~~~~~---~~~~-----~~~ 280 (364)
T PRK08737 217 LTGLRFNIGRVEGGI------KANMIAPAAELRFGFRPLPSMDVDGLLATFAGFAEPA--AATFE---ETFR-----GPS 280 (364)
T ss_pred CCCCceEEeeEecCC------CCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHHHHHc--CCceE---EEec-----cCC
Confidence 123589999999987 8999999999999999999999999999997776532 23333 2100 111
Q ss_pred CCcccccCCCChHHHHH-HHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHH
Q 013216 343 RPILTATDSSNPWWNLL-EEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGI 421 (447)
Q Consensus 343 ~p~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~ 421 (447)
.|.. ..+. .+++..+ +++.+..+... ....+++||+++|...|+|++.|||+... ++|++||+++++++.+++
T Consensus 281 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~tDa~~~~~~Gip~v~~GpG~~~--~aHt~dE~i~i~~l~~~~ 354 (364)
T PRK08737 281 LPSG-DIAR-AEERRLAARDVADALDLPI--GNAVDFWTEASLFSAAGYTALVYGPGDIA--QAHTADEFVTLDQLQRYA 354 (364)
T ss_pred CCCc-ccCc-chHHHHHHHHHHhhhcCCC--CceeccccCHHHHHHcCCCEEEECCCChh--hccCCCcceeHHHHHHHH
Confidence 2222 1222 3566544 44555444332 22346789999999999999999998653 699999999999999999
Q ss_pred HHHHHHHH
Q 013216 422 DIYESIIK 429 (447)
Q Consensus 422 ~~~~~~l~ 429 (447)
++|.+++.
T Consensus 355 ~~~~~~~~ 362 (364)
T PRK08737 355 ESVHRIIN 362 (364)
T ss_pred HHHHHHhc
Confidence 99999875
|
|
| >PRK00466 acetyl-lysine deacetylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-52 Score=408.68 Aligned_cols=339 Identities=22% Similarity=0.234 Sum_probs=280.3
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCC
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp 103 (447)
++..++++++|++|++|||.| ++|.++++||.++|+++|++++..+. .|++. .| .++|+|+||+||||
T Consensus 6 ~~~~~~~~~~l~~lv~i~s~s--~~e~~~~~~l~~~l~~~g~~~~~~~~----~~~~~--~g----~~~lll~gH~DtVp 73 (346)
T PRK00466 6 ELVKQKAKELLLDLLSIYTPS--GNETNATKFFEKISNELNLKLEILPD----SNSFI--LG----EGDILLASHVDTVP 73 (346)
T ss_pred HHHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHcCCeEEEecC----CCcEe--cC----CCeEEEEeccccCC
Confidence 344578899999999999974 78999999999999999998876542 25553 33 26799999999998
Q ss_pred CCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcccccc
Q 013216 104 SEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN 183 (447)
Q Consensus 104 ~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 183 (447)
. +|.+.++ ||+|||||++|||++++++|.|++.|.+.+ .++.|+|++|||+|+ .|++.+++++.
T Consensus 74 ~--------~~~~~~~-~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~-~G~~~l~~~~~-- 137 (346)
T PRK00466 74 G--------YIEPKIE-GEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTS-IGAKELVSKGF-- 137 (346)
T ss_pred C--------CCCceee-CCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCC-ccHHHHHhcCC--
Confidence 4 2566786 999999999999999999999999998875 358999999999876 69999998753
Q ss_pred CCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHHHHhccccCC
Q 013216 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263 (447)
Q Consensus 184 ~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 263 (447)
..|.+++. +|+....+++++||..+++|+++|+++|+|.|+. ||+..+++++..|.++... .
T Consensus 138 ~~d~~i~~-----ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p~~-nAi~~~~~~l~~l~~~~~~------------~ 199 (346)
T PRK00466 138 NFKHIIVG-----EPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSAKS-NLIVDISKKIIEVYKQPEN------------Y 199 (346)
T ss_pred CCCEEEEc-----CCCCCCceEEEeeEEEEEEEEEEeeccccCCCCc-CHHHHHHHHHHHHHhcccc------------C
Confidence 35766664 5665457899999999999999999999998865 9999999999988654211 1
Q ss_pred CcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCC
Q 013216 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGR 343 (447)
Q Consensus 264 ~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (447)
..++++++.+++|. ..|+||++|++.+|+|+.|+++.+++.++|++.+.. ++++ +. ...
T Consensus 200 ~~~t~~~~~i~gG~------~~NvvP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~----~~~~---~~--------~~~ 258 (346)
T PRK00466 200 DKPSIVPTIIRAGE------SYNVTPAKLYLHFDVRYAINNKRDDLISEIKDKFQE----CGLK---IV--------DET 258 (346)
T ss_pred CCCcceeeEEecCC------cCcccCCceEEEEEEEeCCCCCHHHHHHHHHHHHhh----CcEe---ec--------cCC
Confidence 12578899999886 899999999999999999999999999999888863 3343 22 233
Q ss_pred CcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013216 344 PILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 423 (447)
Q Consensus 344 p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~ 423 (447)
|++ ..+.++|+++.+.+++++.+.++ .+...+|++|+++|.+.++|++.|||+... .+|++|||++++++.+++++
T Consensus 259 ~~~-~~~~~~~lv~~l~~a~~~~g~~~-~~~~~~g~tD~~~~~~~~~~~v~fGpg~~~--~aH~~nE~i~i~~l~~~~~~ 334 (346)
T PRK00466 259 PPV-KVSINNPVVKALMRALLKQNIKP-RLVRKAGTSDMNILQKITTSIATYGPGNSM--LEHTNQEKITLDEIYIAVKT 334 (346)
T ss_pred CCc-ccCCCCHHHHHHHHHHHHhCCCc-eEEecCCcCcHHHHHHhCCCEEEECCCCcc--cccCCCceeeHHHHHHHHHH
Confidence 333 45677999999999999976543 555667899999999988899999998654 69999999999999999999
Q ss_pred HHHHHHHHHh
Q 013216 424 YESIIKAYAS 433 (447)
Q Consensus 424 ~~~~l~~l~~ 433 (447)
|..++..++.
T Consensus 335 ~~~~i~~l~~ 344 (346)
T PRK00466 335 YMLAIEELWQ 344 (346)
T ss_pred HHHHHHHHHh
Confidence 9999998864
|
|
| >PRK07079 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=421.16 Aligned_cols=388 Identities=18% Similarity=0.200 Sum_probs=293.7
Q ss_pred hhHHHHHHHhhhcccCCCCC-CChhHHHHHHH----HHHHHCCCceEEEeec--CCCCeEEEEecCCCCCCCeEEEeecc
Q 013216 27 DDSIIERFRAYLQIDTSQPN-PDYTNASKFIL----AQAEALSLESQTLEFA--KNKPLILLKWPGSNPQLPSILLNSHT 99 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~-~~e~~~~~~i~----~~l~~~G~~~~~~~~~--~~~~nl~~~~~g~~~~~~~ill~~H~ 99 (447)
.++++++|++|++|||+|+. .++.++++++. ++|+++|++++.++.. .+++||++.+.+.+ ..|+|+|+||+
T Consensus 16 ~~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~~-~~~~lll~gH~ 94 (469)
T PRK07079 16 SGAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERIEDD-ALPTVLIYGHG 94 (469)
T ss_pred cHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeCCCC-CCCEEEEEccc
Confidence 35899999999999999853 34557777764 5899999999876643 36789999986543 35899999999
Q ss_pred ccCCCCCCCCC--cCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHc-CCCCceeEEEEeecCcccCcccCHHHH
Q 013216 100 DVVPSEPSKWS--HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS-GFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (447)
Q Consensus 100 Dtvp~~~~~W~--~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~-~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (447)
||||++++.|+ ++||+++++ ||+|||||++|||++++++|.|++.|.+. +.++.++|.|++++|||+|+ .|++.+
T Consensus 95 DvVp~~~~~W~~~~~Pf~~~~~-dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~~dEE~g~-~G~~~l 172 (469)
T PRK07079 95 DVVRGYDEQWREGLSPWTLTEE-GDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLLIEMGEEIGS-PGLAEV 172 (469)
T ss_pred CCCCCChHHhcccCCCCccccc-CCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCC-ccHHHH
Confidence 99998777899 599999997 99999999999999999999999998764 46788999999999999987 699999
Q ss_pred Hcccc-ccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeec--CCccCCCCCC---CHHHHHHHHHHHHHhchhh
Q 013216 177 ADSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGA--PGHGAKLYDN---SAMENLFKSIESVRRFRAS 250 (447)
Q Consensus 177 ~~~~~-~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~--~~Hs~~p~~g---nai~~~~~~i~~l~~~~~~ 250 (447)
+++.. ....|++++.+.+...++. +.+++++||..+++|+++|+ +.||+ ++.| ||+..++.+|..+.+....
T Consensus 173 ~~~~~~~~~~d~~iv~e~~~~~~~~-~~i~~g~kG~~~~~v~v~G~~~~~hs~-~~~g~~~nai~~l~~ai~~l~~~~~~ 250 (469)
T PRK07079 173 CRQHREALAADVLIASDGPRLSAER-PTLFLGSRGAVNFRLRVNLRDGAHHSG-NWGGLLRNPGTVLAHAIASLVDARGR 250 (469)
T ss_pred HHHhHHhcCCCEEEEeCCCccCCCC-eEEEEecceEEEEEEEEeeCCCCCCCC-ccccccCCHHHHHHHHHHHhCCCCCC
Confidence 98753 1235788887654333333 56899999999999999997 44665 4443 9999999999988542100
Q ss_pred --------------hHHHHHhccc----------------------cCCCcceeeeeeeecCCCCCCCccccccCCceEE
Q 013216 251 --------------QFDLVKAGLK----------------------AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEA 294 (447)
Q Consensus 251 --------------~~~~~~~~~~----------------------~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~ 294 (447)
....+..... ..-..+|++++.|++|.. ....|+||++|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv~~i~gG~~---~~~~NvVP~~a~~ 327 (469)
T PRK07079 251 IQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGWNTLEVLAFKTGNP---DAPVNAIPGSARA 327 (469)
T ss_pred EecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhCCceEEEeeecCCC---CCcceEecCceEE
Confidence 0000000000 001125789999998842 1258999999999
Q ss_pred EEeeecCCCCCHHHHHHHHHHHhccCC-CCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCc
Q 013216 295 GFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKP 373 (447)
Q Consensus 295 ~~d~R~~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 373 (447)
.+|+|++|+++.+++.++|+++++... ..++++ +. ....|. .++.++|+++.+.+++++.++..+..
T Consensus 328 ~vdiR~~P~~~~e~v~~~l~~~i~~~~~~~v~~~---~~-------~~~~p~--~~~~~~~~v~~l~~a~~~~~g~~~~~ 395 (469)
T PRK07079 328 VCQLRFVVGTDWENLAPHLRAHLDAHGFPMVEVT---VE-------RGSPAT--RLDPDDPWVRWALASIARTTGKKPAL 395 (469)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEE---Ee-------CCCCce--ecCCCCHHHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999987432 233444 22 223333 36778999999999999886543222
Q ss_pred e-ecCCCcchHHHHH-cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhhc
Q 013216 374 E-IFPASTDARYFRE-RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYV 435 (447)
Q Consensus 374 ~-~~~g~~D~~~~~~-~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~~ 435 (447)
. ..+|++|+++|.. .|+|++.||++..+ ...|++||+++++++.+++++|..++..+++..
T Consensus 396 ~~~~~g~~d~~~~~~~~giP~v~~g~~~~~-~~~H~~dE~v~l~~l~~~~~~~~~~~~~~~~~~ 458 (469)
T PRK07079 396 LPNLGGSLPNDVFADILGLPTLWVPHSYPA-CSQHAPNEHLLASVAREGLQIMAGLFWDLGEQG 458 (469)
T ss_pred ecCCCcchhHHHHHHHhCCCEEEecCCCCC-ccCcCCCCCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 2 2346678888875 69999977554322 257999999999999999999999999997543
|
|
| >PRK08652 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=405.05 Aligned_cols=344 Identities=20% Similarity=0.247 Sum_probs=282.0
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCCC
Q 013216 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPS 107 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~ 107 (447)
+++++++++|++|||.| ++|.++++||.++|+++|++++.... .+.+|+++ + +.|+|+|+|||||||...
T Consensus 2 ~~~~~~~~~lv~ips~s--~~e~~~~~~l~~~l~~~G~~v~~~~~-~~~~~~~~---~---~~~~i~l~~H~D~vp~~~- 71 (347)
T PRK08652 2 ERAKELLKQLVKIPSPS--GQEDEIALHIMEFLESLGYDVHIESD-GEVINIVV---N---SKAELFVEVHYDTVPVRA- 71 (347)
T ss_pred hhHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCEEEEEec-CceeEEEc---C---CCCEEEEEccccccCCCC-
Confidence 67899999999999986 78899999999999999999876443 23567776 2 238999999999999752
Q ss_pred CCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCce
Q 013216 108 KWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (447)
Q Consensus 108 ~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~ 187 (447)
+| .++ ||++||||++|||++++++|.|++.|.+.. ++++|.|+|++|||.|+ .|++.++++. . .|+
T Consensus 72 ----~~---~~~-~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~dEE~g~-~G~~~~~~~~--~-~d~ 137 (347)
T PRK08652 72 ----EF---FVD-GVYVYGTGACDAKGGVAAILLALEELGKEF--EDLNVGIAFVSDEEEGG-RGSALFAERY--R-PKM 137 (347)
T ss_pred ----CC---EEE-CCEEEeccchhhhHHHHHHHHHHHHHhhcc--cCCCEEEEEecCcccCC-hhHHHHHHhc--C-CCE
Confidence 23 365 999999999999999999999999998653 45799999999999986 6999998753 2 367
Q ss_pred EEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcc
Q 013216 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266 (447)
Q Consensus 188 ~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 266 (447)
+++.+ |+. ..+.++++|..+++|+++|+++|++.|+.| ||+..+++++..|+.+..... .. . .+
T Consensus 138 ~i~~e-----p~~-~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~~----~~---~--~~ 202 (347)
T PRK08652 138 AIVLE-----PTD-LKVAIAHYGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKALG----KY---F--DP 202 (347)
T ss_pred EEEec-----CCC-CceeeecccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhhh----cc---c--CC
Confidence 77774 543 468899999999999999999999999998 999999999999977543210 00 1 13
Q ss_pred eeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcc
Q 013216 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPIL 346 (447)
Q Consensus 267 t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 346 (447)
+++++.+++|. ..|+||++|++.+|+|++|.++.+++.++|+++++. .+++++ +. ... |.+
T Consensus 203 ~~~~~~i~gg~------~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~--~~v~~~---~~-------~~~-~~~ 263 (347)
T PRK08652 203 HIGIQEIIGGS------PEYSIPALCRLRLDARIPPEVEVEDVLDEIDPILDE--YTVKYE---YT-------EIW-DGF 263 (347)
T ss_pred CCcceeeecCC------CCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHh--cCceEE---Ee-------ccC-Ccc
Confidence 56666788776 889999999999999999999999999999988853 345555 32 122 333
Q ss_pred cccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q 013216 347 TATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYES 426 (447)
Q Consensus 347 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~ 426 (447)
..+.++++++.+.+++++.+..+ .+..++|++|+++|...|+|++.|||+... ..|++|||++++++.+++++|.+
T Consensus 264 -~~~~~~~lv~~l~~a~~~~g~~~-~~~~~~g~tDa~~~~~~gip~v~~Gpg~~~--~~H~~nE~i~i~~l~~~~~~l~~ 339 (347)
T PRK08652 264 -ELDEDEEIVQLLEKAMKEVGLEP-EFTVMRSWTDAINFRYNGTKTVVWGPGELD--LCHTKFERIDVREVEKAKEFLKA 339 (347)
T ss_pred -cCCCCCHHHHHHHHHHHHhCCCC-CcCcCCccchhHHHHHCCCCEEEECCCchh--hcCCCCceeeHHHHHHHHHHHHH
Confidence 35678999999999999995443 566678899999999999999999998653 69999999999999999999999
Q ss_pred HHHHHHh
Q 013216 427 IIKAYAS 433 (447)
Q Consensus 427 ~l~~l~~ 433 (447)
++..++.
T Consensus 340 ~~~~~~~ 346 (347)
T PRK08652 340 LNEILLE 346 (347)
T ss_pred HHHHHhc
Confidence 9988753
|
|
| >COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=407.09 Aligned_cols=382 Identities=24% Similarity=0.408 Sum_probs=299.8
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCC--CCeEEEEecCCCCCCCeEEEeeccccC
Q 013216 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKN--KPLILLKWPGSNPQLPSILLNSHTDVV 102 (447)
Q Consensus 25 ~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~--~~nl~~~~~g~~~~~~~ill~~H~Dtv 102 (447)
...++++++|++|++|||+| ...+.++++++.++|+++|+.++....... .+|+++.+.+..+. |+|+|+||+|||
T Consensus 10 ~~~~~~~~~l~~lv~~~s~s-~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~l~l~~H~DvV 87 (409)
T COG0624 10 DLLDDILELLKELVRIPSVS-AGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGG-PTLLLGGHLDVV 87 (409)
T ss_pred HhhHHHHHHHHHHhcCCCCC-cccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCC-CeEEEecccccc
Confidence 35678889999999999997 578889999999999999999887665432 57999999765433 899999999999
Q ss_pred CCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcccc
Q 013216 103 PSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (447)
Q Consensus 103 p~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (447)
|+++ ..|+++||.++++ +|+|||||++||||++++++.|++.+.+.+..++++|.+++++|||+|+ .|+..++.++.
T Consensus 88 P~g~~~~W~~~Pf~~~~~-dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~-~~~~~~~~~~~ 165 (409)
T COG0624 88 PAGGGEDWTTDPFEPTIK-DGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGG-AGGKAYLEEGE 165 (409)
T ss_pred CCCCcccCccCCCccEEE-CCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCC-cchHHHHHhcc
Confidence 9998 8999999999997 8999999999999999999999999999877788999999999999998 68887777653
Q ss_pred c---cCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCC--CCCC-CHHHHHHHHHHHH----Hhchhhh
Q 013216 182 F---NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK--LYDN-SAMENLFKSIESV----RRFRASQ 251 (447)
Q Consensus 182 ~---~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~--p~~g-nai~~~~~~i~~l----~~~~~~~ 251 (447)
. ...|+.++.+... .......++.++||..+++|+++|+++|+|. |+.+ |++..+...+..+ .++....
T Consensus 166 ~~~~~~~d~~i~~E~~~-~~~~~~~~~~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~ 244 (409)
T COG0624 166 EALGIRPDYEIVGEPTL-ESEGGDIIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEG 244 (409)
T ss_pred hhhccCCCEEEeCCCCC-cccCCCeEEEcceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhccccccc
Confidence 2 3457777776411 1123356777999999999999999999998 7777 9554444444443 3222111
Q ss_pred HHHHHhccccCCCcceeeeeeeecCCC--CCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCC--CCceEe
Q 013216 252 FDLVKAGLKAEGEVVSVNMAFLKAGTP--SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS--RNMTFE 327 (447)
Q Consensus 252 ~~~~~~~~~~~~~~~t~~~~~i~~g~~--~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~--~~~~~~ 327 (447)
+ ....+++++.+.++.. ..++...|+||++|++.+|+|+.|.++.+++.++|++.++... .+++++
T Consensus 245 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~~~ 314 (409)
T COG0624 245 F----------DGPLGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVEYE 314 (409)
T ss_pred c----------cCCccccccccccCCcccccCCccCceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccccCceEE
Confidence 0 0024666666665553 2445567999999999999999999999998888888776432 244555
Q ss_pred eccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCC
Q 013216 328 LGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHD 407 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~ 407 (447)
+.. ....++. .++.++++++.+.+++++..+........++++|+.|++..++|++.|||+..+ .+|+
T Consensus 315 ---~~~------~~~~~~~-~~~~~~~~v~~l~~~~~~~~g~~~~~~~~G~~~da~~~~~~~~~~~~fgp~~~~--~~H~ 382 (409)
T COG0624 315 ---IEP------GLGEPPL-PVPGDSPLVAALAEAAEELLGLPPEVSTGGGTHDARFFARLGIPAVIFGPGDIG--LAHQ 382 (409)
T ss_pred ---ecc------ccCCccc-cCCCchHHHHHHHHHHHHhhCCCceecCCCCcchHHHHHhcCCeeEEECCCCcc--cccC
Confidence 321 1223332 567789999999999999754432333444568999999999899999999854 7999
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 408 HNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 408 ~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
+|||++++++.+++++|..+++.+++
T Consensus 383 ~~E~v~i~~l~~~~~~~~~~l~~l~~ 408 (409)
T COG0624 383 PNEYVELEDLVKGAKVLARLLYELAE 408 (409)
T ss_pred CCceeeHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999874
|
|
| >PRK04443 acetyl-lysine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=396.46 Aligned_cols=342 Identities=19% Similarity=0.218 Sum_probs=273.7
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~ 106 (447)
.++++++|++|++|||++ ++|.++++|+.++|+++|++++..+ ..|+++++ |. +.|+|+|+||+||||..
T Consensus 5 ~~~~~~~l~~Lv~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~----~~n~i~~~-~~--~~~~l~~~~H~DtVp~~- 74 (348)
T PRK04443 5 ALEARELLKGLVEIPSPS--GEEAAAAEFLVEFMESHGREAWVDE----AGNARGPA-GD--GPPLVLLLGHIDTVPGD- 74 (348)
T ss_pred hHHHHHHHHHHHcCCCCC--CChHHHHHHHHHHHHHcCCEEEEcC----CCcEEEEc-CC--CCCEEEEEeeccccCCC-
Confidence 467999999999999985 7889999999999999999887432 34899987 33 24899999999999953
Q ss_pred CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCc
Q 013216 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (447)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~ 186 (447)
.|| +++ ||++||||++|||+++++++.|++.| +.+++++|.|+++++||+|+. |...++.+. + ..|
T Consensus 75 -----~p~--~~~-~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~-~~~~~l~~~-~-~~d 140 (348)
T PRK04443 75 -----IPV--RVE-DGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSS-GGARLVADR-E-RPD 140 (348)
T ss_pred -----CCc--Eee-CCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCCh-hHHHHHHhc-c-CCC
Confidence 365 466 99999999999999999999999998 346789999999999999874 555555543 2 357
Q ss_pred eEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCc
Q 013216 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV 265 (447)
Q Consensus 187 ~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 265 (447)
++++. +|++...++.++||..+++|+++|+++|||.| + ||+..+++++..|..+... ..........
T Consensus 141 ~~iv~-----Ept~~~~i~~~~kG~~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~~-----~~~~~~~~~~ 208 (348)
T PRK04443 141 AVIIG-----EPSGWDGITLGYKGRLLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFEA-----NDGRERVFDQ 208 (348)
T ss_pred EEEEe-----CCCCccceeeecccEEEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHhc-----Cccccccccc
Confidence 77776 46553468899999999999999999999977 5 9999999999998765320 0000001123
Q ss_pred ceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCc
Q 013216 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPI 345 (447)
Q Consensus 266 ~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 345 (447)
++++++.+.. ..|+||++|++.+|+|+.|.++.++++++|++.+. .++++ +. .. .|+
T Consensus 209 ~~~~i~~i~~--------~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i~~~~~----~~~~~---~~-------~~-~~~ 265 (348)
T PRK04443 209 VTPKLVDFDS--------SSDGLTVEAEMTVGLRLPPGLSPEEAREILDALLP----TGTVT---FT-------GA-VPA 265 (348)
T ss_pred cceeeeEEec--------CCCCCCceEEEEEEEccCCCCCHHHHHHHHHHhCC----CcEEE---Ee-------cC-CCc
Confidence 5677777772 56999999999999999999999999999988874 23344 32 22 333
Q ss_pred ccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHH-cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013216 346 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE-RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 424 (447)
Q Consensus 346 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~-~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~ 424 (447)
+ .++.++|+++.+.+++++.++.+ .....+|++|+++|.+ .|+|++.|||+... .+|++|||++++++.+++++|
T Consensus 266 ~-~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~g~tD~~~~~~~~gip~v~~Gpg~~~--~~H~~dE~i~i~~l~~~~~~~ 341 (348)
T PRK04443 266 Y-MVSKRTPLARAFRVAIREAGGTP-RLKRKTGTSDMNVVAPAWGCPMVAYGPGDSD--LDHTPDEHLPLAEYLRAIAVL 341 (348)
T ss_pred e-ecCCCCHHHHHHHHHHHHhcCCc-ceeccccCCcHHHHhhhcCCCEEEECCCCcc--ccCCCcccccHHHHHHHHHHH
Confidence 3 35678999999999999987754 4445679999999986 59999999998653 689999999999999999999
Q ss_pred HHHHHHH
Q 013216 425 ESIIKAY 431 (447)
Q Consensus 425 ~~~l~~l 431 (447)
..++..|
T Consensus 342 ~~~~~~l 348 (348)
T PRK04443 342 TDVLERL 348 (348)
T ss_pred HHHHhhC
Confidence 9998754
|
|
| >TIGR01886 dipeptidase dipeptidase PepV | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-50 Score=407.63 Aligned_cols=369 Identities=20% Similarity=0.293 Sum_probs=280.9
Q ss_pred CCChhHHHHHHHhhhcccCCCCC----------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeE
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPN----------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~----------~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i 93 (447)
+++.++++++|++|++|||+++. .++.++++++.++|+++||+++.++ |+++.+.+. ++.++|
T Consensus 9 ~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~------~~~~~~~~~-~~~~~l 81 (466)
T TIGR01886 9 EARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFD------NYAGHVEYG-AGDERL 81 (466)
T ss_pred HHhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEec------CCceeEEec-CCCCEE
Confidence 45678999999999999999742 3467788899999999999988654 233333222 234899
Q ss_pred EEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCH
Q 013216 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (447)
Q Consensus 94 ll~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (447)
+|+|||||||++ +.|+++||+++++ ||+|||||++|||++++++|.|+++|++.+.+++++|.|+++++||+|+ .|+
T Consensus 82 ~~~gH~DvVp~~-~~W~~~Pf~~~~~-dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g~ 158 (466)
T TIGR01886 82 GIIGHMDVVPAG-EGWTRDPFEPEID-EGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGW-VDM 158 (466)
T ss_pred EEEeecccCCCC-CCCcCCCCCeEEE-CCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCc-ccH
Confidence 999999999997 5799999999997 9999999999999999999999999999998889999999999999986 699
Q ss_pred HHHHccccccCCceEEEEecCCc----CcCCcce---------------------------------eE-----------
Q 013216 174 EKFADSHVFNSLNVGIVLDEGLA----STTEDYR---------------------------------AF----------- 205 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~d~g~~----~p~~~~~---------------------------------i~----------- 205 (447)
+++++++.. .|++++.|.+.. +++. .. ++
T Consensus 159 ~~~~~~~~~--~d~~~~~d~~~~~~~ge~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~ 235 (466)
T TIGR01886 159 DYYFKHEET--PDFGFSPDAEFPIINGEKGN-FTLELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKAA 235 (466)
T ss_pred HHHHhcCcC--CCEEEECCCCceeEEEecce-EEEEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHH
Confidence 999986542 355544332100 1111 00 11
Q ss_pred ----eeeeeeE---------EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhch--hhhHHHHHh---------c--
Q 013216 206 ----YAERCPW---------WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFR--ASQFDLVKA---------G-- 258 (447)
Q Consensus 206 ----~~~~G~~---------~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~--~~~~~~~~~---------~-- 258 (447)
.+++|.. +++|+++|+++|+|.|+.| |||..|++++..+..-. ...++.+.. .
T Consensus 236 ~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 315 (466)
T TIGR01886 236 YESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKLG 315 (466)
T ss_pred HHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccCC
Confidence 1244433 7889999999999999999 99999999887631100 000011100 0
Q ss_pred ---cccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccc
Q 013216 259 ---LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRA 335 (447)
Q Consensus 259 ---~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 335 (447)
.......+|++++.|++|. . | ++|++.+|+|++|.++.+++.++|++.+.. .++++ +..
T Consensus 316 ~~~~~~~~g~~S~nvgvI~gG~------~-~---~~~~l~iD~R~~Pge~~eev~~eI~~~i~~---~~~v~---~~~-- 377 (466)
T TIGR01886 316 IAFHDELMGDLAMNAGMFDFDH------A-N---KESKLLLNFRYPQGTSPETMQKQVLDKFGG---IVDVT---YNG-- 377 (466)
T ss_pred CcccccCcCceEEEeEEEEEec------C-C---ceEEEEEEEecCCCCCHHHHHHHHHHHHhc---ccEEE---Eec--
Confidence 0011224689999999884 3 3 799999999999999999999999888863 23344 210
Q ss_pred cccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHH
Q 013216 336 SLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQA 415 (447)
Q Consensus 336 ~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~ 415 (447)
....|.+ ++.++++++.+.+++++..+..+.+..++|+||+++|.. ++|...|||+... ++|++|||++++
T Consensus 378 ----~~~~P~~--~~~ds~lv~~l~~a~~~v~G~~~~~~~~~ggTDa~~~~~-~i~~gv~gPG~~~--~aH~~dE~V~i~ 448 (466)
T TIGR01886 378 ----HFEEPHY--VPGSDPLVQTLLKVYEKHTGKKGHEVIIGGGTYGRLLER-GVAYGAMFEGGPD--VMHQANEFMMLD 448 (466)
T ss_pred ----ccCCCcc--cCCCCHHHHHHHHHHHHHhCCCCceeeecCccHHHhccc-ccccccccCCCCC--CccCCCcceEHH
Confidence 1234554 456789999999999998665545566789999999984 6888888898654 689999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013216 416 EYLKGIDIYESIIKAYA 432 (447)
Q Consensus 416 ~l~~~~~~~~~~l~~l~ 432 (447)
++.+++++|..++..++
T Consensus 449 el~~a~~iy~~~i~~l~ 465 (466)
T TIGR01886 449 DLILAAAIYAEAIYELA 465 (466)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999885
|
This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus. |
| >TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=393.94 Aligned_cols=343 Identities=19% Similarity=0.203 Sum_probs=263.4
Q ss_pred HHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC---CCC
Q 013216 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP---SKW 109 (447)
Q Consensus 33 ~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~---~~W 109 (447)
+|++|++|||+| ++|.+++++|.++|+++|+.-..++.. ..||++++.+. + .++|+|+|||||||+++ ..|
T Consensus 1 ll~~Lv~ipS~s--~~e~~~~~~i~~~l~~~g~~~~~~~~~--~~nvva~~~~~-~-~~~l~l~gH~DtVp~~~~~~~~W 74 (373)
T TIGR01900 1 LLQQIMDIFSPS--DHEGPIADEIEAALNNLELEGLEVFRF--GDNVLARTDFG-K-ASRVILAGHIDTVPIADNFPPKW 74 (373)
T ss_pred ChHHHhCCCCCC--chHHHHHHHHHHHHhhccccCceEEEE--CCEEEEecCCC-C-CCeEEEeCccccccCCCCChhhh
Confidence 478999999986 789999999999999997542112222 23999997432 2 47899999999999974 469
Q ss_pred CcCCC--------ceeeCCCCcEEecCcccchhHHHHHHHHHHHHHH--cCCCCceeEEEEeecCcccCc-ccCHHHHHc
Q 013216 110 SHHPF--------GAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA--SGFQPVRSVYLSFVPDEEIGG-HDGAEKFAD 178 (447)
Q Consensus 110 ~~~Pf--------~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~--~~~~~~~~i~~~~~~~EE~g~-~~G~~~~~~ 178 (447)
+++|| .+.++ ||+|||||++|||++++++|.|++.|.+ .+..++++|.|+|+++||+++ ..|++.+++
T Consensus 75 ~~~p~~~~~~~~~~~~~~-~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~ 153 (373)
T TIGR01900 75 LEPGDSLIREEIAHAHPE-DGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRD 153 (373)
T ss_pred ccCccccccccccccccc-CCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHHH
Confidence 98775 46786 9999999999999999999999999964 345678999999999999863 249999987
Q ss_pred ccc-ccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHH
Q 013216 179 SHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVK 256 (447)
Q Consensus 179 ~~~-~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~ 256 (447)
+.. +...|++++. +|+. ..++.+++|..+++|+++|+++|+|.|+.| ||+..+++++..|+.+......
T Consensus 154 ~~~~~~~~d~~iv~-----Ept~-~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~--- 224 (373)
T TIGR01900 154 AHPDWLAADFAIIG-----EPTG-GGIEAGCNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVN--- 224 (373)
T ss_pred hCcccccCCEEEEE-----CCCC-CcccccceeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhccccc---
Confidence 642 2245766665 4664 578999999999999999999999999999 9999999999999876431110
Q ss_pred hccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc-----------CC--CC
Q 013216 257 AGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-----------AS--RN 323 (447)
Q Consensus 257 ~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~-----------~~--~~ 323 (447)
.......++++++.|++|. ..|+||++|++.+|+|+.|.++.+++.+.|+++++. .. .+
T Consensus 225 --~~~~~~~~t~~v~~I~GG~------~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 296 (373)
T TIGR01900 225 --IDGLDYREGLNATFCEGGK------ANNVIPDEARMHLNFRFAPDKDLAEAKALMMGADAGAELGNGEHVAEGGEFDG 296 (373)
T ss_pred --ccCCcccceEEEEEEeCCC------CCcccCCeEEEEEEEecCCCcCHHHHHHHHHhhhhhhhhhHHHHHHhhccccc
Confidence 0011123589999999886 899999999999999999999999999998654321 00 00
Q ss_pred -ceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCC
Q 013216 324 -MTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTP 402 (447)
Q Consensus 324 -~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~ 402 (447)
..++ ++. ....|.. .++.++++++.+.+++++..+..+. ...|+||+++|...|+|++.|||+...
T Consensus 297 ~~~~~---~~~------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~g~tD~~~~~~~gip~v~~Gpg~~~- 363 (373)
T TIGR01900 297 QDGIE---IAM------EDEAGGA-LPGLGAPLAQDLIDAVGEEKGRDPL--AKFGWTDVARFSALGIPALNFGAGDPL- 363 (373)
T ss_pred cccce---EEE------cccCCCC-CCCCCCHHHHHHHHHHHhccCCCcc--cccCCccHHHHHhcCCCEEEeCCCChh-
Confidence 0122 210 1122222 2455789999999999998665422 367889999999889999999998754
Q ss_pred CCCCCCCcccc
Q 013216 403 ILLHDHNEFLN 413 (447)
Q Consensus 403 ~~~H~~~E~v~ 413 (447)
++|++|||++
T Consensus 364 -~aH~~dE~v~ 373 (373)
T TIGR01900 364 -FAHKHDEQCP 373 (373)
T ss_pred -hccCCCCCCC
Confidence 6999999985
|
This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546. |
| >PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-49 Score=387.81 Aligned_cols=342 Identities=18% Similarity=0.228 Sum_probs=273.7
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHC-CCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL-SLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~-G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~ 105 (447)
.+++++++++|++|||+| ++|.++++||.++|+++ |+++... ..|+++++.+. . .++|+|+|||||||+.
T Consensus 6 ~~~~~~~l~~li~ips~s--~~e~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~~~-~-~~~i~l~~H~Dtvp~~ 76 (352)
T PRK13007 6 AADLAELTAALVDIPSVS--GDEKALADAVEAALRALPHLEVIRH-----GNSVVARTDLG-R-PSRVVLAGHLDTVPVA 76 (352)
T ss_pred HHHHHHHHHHHhcCCCCC--chHHHHHHHHHHHHHhCcCceEEec-----CCeEEEEccCC-C-CCeEEEEccccccCCC
Confidence 478999999999999985 78999999999999996 8876531 24899998432 2 3679999999999986
Q ss_pred CCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcc-cCHHHHHccc-ccc
Q 013216 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH-DGAEKFADSH-VFN 183 (447)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-~G~~~~~~~~-~~~ 183 (447)
+ ||.+.++ ||++||||++|||+++|++|.|++.|. +++++|.|+|+++||+++. .|++.++++. .+.
T Consensus 77 ~------~~~~~~~-~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~~ 145 (352)
T PRK13007 77 D------NLPSRRE-GDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEWL 145 (352)
T ss_pred C------CCCccee-CCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhccccc
Confidence 3 5667786 999999999999999999999999983 3678999999999998642 4888888753 233
Q ss_pred CCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccC
Q 013216 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (447)
Q Consensus 184 ~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 262 (447)
+.|++++.+ |+. ..++.+++|..+++|+++|+++|+|.|+.+ ||+..++++|..|+.+...... ....
T Consensus 146 ~~d~~i~~e-----p~~-~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~-----~~~~ 214 (352)
T PRK13007 146 AGDFAILLE-----PTD-GVIEAGCQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVV-----VDGL 214 (352)
T ss_pred CCCEEEEec-----CCC-CceEeeccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccc-----cCCC
Confidence 467777764 543 468899999999999999999999999988 9999999999999875432100 0001
Q ss_pred CCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCC
Q 013216 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFG 342 (447)
Q Consensus 263 ~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (447)
....+++++.+++|. ..|+||++|++.+|+|++|.++.+++.++|++++.... +++ +. ...
T Consensus 215 ~~~~~~~~~~i~gG~------~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~---~~~---~~-------~~~ 275 (352)
T PRK13007 215 TYREGLNAVRISGGV------AGNVIPDECVVNVNYRFAPDRSLEEALAHVREVFDGFA---EVE---VT-------DLA 275 (352)
T ss_pred CccceeEeEeEecCC------cCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHHhcccc---EEE---ee-------ccc
Confidence 112478899999886 89999999999999999999999999999998886322 444 32 122
Q ss_pred CCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHH
Q 013216 343 RPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGID 422 (447)
Q Consensus 343 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~ 422 (447)
.|. ....++++++.+.+++ +.. +....|++|++++...|+|++.|||+... ..|++||+++++++.++++
T Consensus 276 ~~~--~~~~~~~~~~~~~~~~---g~~---~~~~~g~td~~~~~~~Gip~v~~Gpg~~~--~~H~~~E~v~i~~l~~~~~ 345 (352)
T PRK13007 276 PGA--RPGLDHPAAAALVAAV---GGE---VRAKYGWTDVARFSALGIPAVNFGPGDPA--LAHQRDEHVPVAQITACAR 345 (352)
T ss_pred CCC--CCCCCCHHHHHHHHHh---CCC---CccccccchHHHHHhCCCCEEEeCCCchh--hccCCCCceEHHHHHHHHH
Confidence 333 3456889998888863 332 23356889999999999999999998653 7999999999999999999
Q ss_pred HHHHHH
Q 013216 423 IYESII 428 (447)
Q Consensus 423 ~~~~~l 428 (447)
+|..++
T Consensus 346 ~~~~~~ 351 (352)
T PRK13007 346 ILRRWL 351 (352)
T ss_pred HHHHHh
Confidence 999876
|
|
| >PRK07205 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=396.82 Aligned_cols=368 Identities=20% Similarity=0.241 Sum_probs=263.7
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCC--------hhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEE
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNPD--------YTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILL 95 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~~--------e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill 95 (447)
+++.++++++|++|++|||+|+... ..+.++++.++|+++|++++..+ .+ .++++.+ |. +.++|+|
T Consensus 7 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~-~~~~~~~-g~--~~~~lll 80 (444)
T PRK07205 7 EKVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDP--KG-YYGYAEI-GQ--GEELLAI 80 (444)
T ss_pred HHhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcC--CC-eEEEEEe-cC--CCcEEEE
Confidence 5578899999999999999974321 14678888899999999887543 23 3666665 44 3478999
Q ss_pred eeccccCCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHH
Q 013216 96 NSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (447)
Q Consensus 96 ~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (447)
+||+||||+++ +.|+++||++.++ ||+|||||++|||++++++|.|++.|++.+.+++++|.|+|++|||+|+ .|++
T Consensus 81 ~gH~DvVp~~~~~~W~~~Pf~~~v~-dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~-~g~~ 158 (444)
T PRK07205 81 LCHLDVVPEGDLSDWQTPPFEAVEK-DGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLW-RCMN 158 (444)
T ss_pred EEeeccCCCCCcccCCCCCCceEEE-CCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCc-ccHH
Confidence 99999999976 7899999999997 9999999999999999999999999999988888999999999999987 6898
Q ss_pred HHHccccccC----Cc--eEEEEec-CC------cCcCCcceeEee-----------ee--------------ee----E
Q 013216 175 KFADSHVFNS----LN--VGIVLDE-GL------ASTTEDYRAFYA-----------ER--------------CP----W 212 (447)
Q Consensus 175 ~~~~~~~~~~----~~--~~~~~d~-g~------~~p~~~~~i~~~-----------~~--------------G~----~ 212 (447)
.+++...... .+ ..++... |. .+|+....+..+ ++ |. .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~ 238 (444)
T PRK07205 159 RYNEVEEQATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVK 238 (444)
T ss_pred HHHhCCCCCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeec
Confidence 8887432110 01 1011110 00 012211000000 22 21 2
Q ss_pred EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhc--c------------ccCCCcceeeeeeeecCC
Q 013216 213 WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAG--L------------KAEGEVVSVNMAFLKAGT 277 (447)
Q Consensus 213 ~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~--~------------~~~~~~~t~~~~~i~~g~ 277 (447)
+.+++++|+++|+|.|+.| |||..+++++..++.+.. .+.+... . ......++++++
T Consensus 239 ~~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nvg------ 310 (444)
T PRK07205 239 ENEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPA--LDFLANVIGEDATGLNIFGDIEDEPSGKLSFNIA------ 310 (444)
T ss_pred CcEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHH--HHHHHHhcCCCCccccCCccccCCCcCCceEEeE------
Confidence 3489999999999999988 999999999988764321 1101000 0 000011233332
Q ss_pred CCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCCChHHH
Q 013216 278 PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWN 357 (447)
Q Consensus 278 ~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 357 (447)
..|+||++|++.+|+|+.|.++.+++.++|+++++. .+++++ .. ....|. ..+.++++++
T Consensus 311 ------~~nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~--~~v~~~---~~-------~~~~p~--~~~~~~~lv~ 370 (444)
T PRK07205 311 ------GLTITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQE--YGLTYE---EF-------DYLAPL--YVPLDSELVS 370 (444)
T ss_pred ------EEEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHH--cCcEEE---Ee-------cCCCce--eeCCCcHHHH
Confidence 458999999999999999999999999999888753 234333 21 122332 3567899999
Q ss_pred HHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEc---cCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 358 LLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFS---PMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~g---p~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
.+.+++++..+....+..++|++|+.+ ..|++.|| |+... .+|++||+++++++.+++++|..++..++.
T Consensus 371 ~l~~~~~~~~g~~~~~~~~gg~~~~~~----~~~~i~~G~~~Pg~~~--~aH~~nE~v~i~~l~~~~~~l~~~l~~l~~ 443 (444)
T PRK07205 371 TLMSVYQEKTGDDSPAQSSGGATFART----MPNCVAFGALFPGAPQ--TEHQANEHIVLEDLYRAMDIYAEAIYRLTT 443 (444)
T ss_pred HHHHHHHHHhCCCCceEEeccHHHHHh----CCCcEEECCccCCCCC--CCcCcccCccHHHHHHHHHHHHHHHHHHhc
Confidence 999999987544323444556566543 25788999 65433 699999999999999999999999988753
|
|
| >TIGR01883 PepT-like peptidase T-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=389.17 Aligned_cols=349 Identities=20% Similarity=0.232 Sum_probs=282.5
Q ss_pred HHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecC---CCCeEEEEecCCCCCCCeEEEeeccccCCCC
Q 013216 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK---NKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (447)
Q Consensus 29 ~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~---~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~ 105 (447)
+++++|++|++|||+| ++|.+++++|.++|+++|++++..+..+ +++|+++.++|..+ .|+|+|.||+||||++
T Consensus 1 ~~~~~~~~l~~i~s~s--~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~i~l~~H~D~V~~~ 77 (361)
T TIGR01883 1 RLKKYFLELIQIDSES--GKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVK-FDTIFFCGHMDTVPPG 77 (361)
T ss_pred ChHHHHHHHeecCCCC--CcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCC-CCcEEEEeeccccCCC
Confidence 4688999999999986 7899999999999999999987654321 36899999987643 4899999999999986
Q ss_pred CCCCCcCCCceeeCCCCcEEecCc----ccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcccc
Q 013216 106 PSKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (447)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~----~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (447)
+ ||.+.++ +|++||||+ +|||++++++|.+++.|.+.+ .++++|.|+|+++||.|+ .|++.+.+..
T Consensus 78 ~------~~~~~~~-~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~-~G~~~~~~~~- 147 (361)
T TIGR01883 78 A------GPEPVVE-DGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGL-IGMRLFDESK- 147 (361)
T ss_pred C------CCCceec-CCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCc-hhHhHhChhh-
Confidence 3 4556676 999999999 999999999999999998876 467899999999999885 6999887542
Q ss_pred ccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhcc
Q 013216 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (447)
Q Consensus 182 ~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~ 259 (447)
. ..+++++++.+ .....++.+++|..+++++++|+++|+| .|+.| ||+..+++++..|.....
T Consensus 148 ~-~~~~~~~~~~~----~~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~~---------- 212 (361)
T TIGR01883 148 I-TAAYGYCLDAP----GEVGNIQLAAPTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGRI---------- 212 (361)
T ss_pred c-CcceeEEEeCC----CCcceEEecCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccccCC----------
Confidence 2 24677777632 1223578899999999999999999985 69999 999999999988854211
Q ss_pred ccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC--CCCceEeeccccccccc
Q 013216 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFELGQFKQRASL 337 (447)
Q Consensus 260 ~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 337 (447)
...++++++.+++|. ..|+||++|++.+|+|..|..+.+.+.++|++.++.. ..+.+++ +..
T Consensus 213 ---~~~~~~~i~~i~gG~------~~nvVP~~~~~~~diR~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~---~~~---- 276 (361)
T TIGR01883 213 ---DEETTANIGSFSGGV------NTNIVQDEQLIVAEARSLSFRKAEAQVQTMRERFEQAAEKYGATLE---EET---- 276 (361)
T ss_pred ---CCccccccceeecCC------ccCccCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCEEE---EEE----
Confidence 112578888889887 8999999999999999999998888888888877632 2344444 331
Q ss_pred cccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHH
Q 013216 338 HDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEY 417 (447)
Q Consensus 338 ~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l 417 (447)
....|.+ .++.++++++.+++++++.+..+ ....+.|++|++++...|+|++.|||+.. .+|++||+++++++
T Consensus 277 --~~~~~~~-~~~~~~~lv~~l~~a~~~~g~~~-~~~~~~g~tD~~~~~~~giP~v~~G~g~~---~~Hs~~E~v~i~~~ 349 (361)
T TIGR01883 277 --RLIYEGF-KIHPQHPLMNIFKKAAKKIGLKT-SEIFSGGGSDANVLNEKGVPTVNLSAGYV---HAHTEKETISIEQL 349 (361)
T ss_pred --Eeccccc-cCCCCCHHHHHHHHHHHHcCCCc-EEEecCcccHHHHHhhCCCceEEECCCcc---cCcCcceeEEHHHH
Confidence 1223333 45668899999999999876544 44556789999999988999999999974 69999999999999
Q ss_pred HHHHHHHHHHH
Q 013216 418 LKGIDIYESII 428 (447)
Q Consensus 418 ~~~~~~~~~~l 428 (447)
.+++++|..++
T Consensus 350 ~~~~~~~~~~~ 360 (361)
T TIGR01883 350 VKLAELVIALA 360 (361)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
|
This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene. |
| >PRK13381 peptidase T; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-49 Score=394.19 Aligned_cols=360 Identities=19% Similarity=0.237 Sum_probs=278.1
Q ss_pred HHHHHHHhhhcccCCCC--------CCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccc
Q 013216 29 SIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTD 100 (447)
Q Consensus 29 ~~~~~l~~l~~ips~s~--------~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~D 100 (447)
+.++.|.+|++|||+|. +.++.++++||.++|+++|++...++ +++||+++++|++++.|+|+|+||+|
T Consensus 2 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~---~~~nvi~~~~g~~~~~~~lll~~H~D 78 (404)
T PRK13381 2 QLTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVID---EHAIVTAKLPGNTPGAPRIGFIAHLD 78 (404)
T ss_pred cHHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEc---CCeEEEEEEecCCCCCCeEEEEEEec
Confidence 46889999999999973 23578999999999999999655443 77899999987765558999999999
Q ss_pred cCCCCCC--------CCCcCCCcee------------------eCCCCcEEecCc----ccchhHHHHHHHHHHHHHHcC
Q 013216 101 VVPSEPS--------KWSHHPFGAH------------------LDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASG 150 (447)
Q Consensus 101 tvp~~~~--------~W~~~Pf~~~------------------~~~~g~l~GrG~----~D~k~~~a~~l~a~~~l~~~~ 150 (447)
|||+++. .|+.+||.+. .+ ++++||||+ +|||++++++|.|++.|.+.+
T Consensus 79 ~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~ 157 (404)
T PRK13381 79 TVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQG-EDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE 157 (404)
T ss_pred CCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccC-CcEEeCCCccccccccHHHHHHHHHHHHHHHhcC
Confidence 9998753 2554444332 23 677999999 999999999999999998875
Q ss_pred CCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCC-CC
Q 013216 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-LY 229 (447)
Q Consensus 151 ~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~-p~ 229 (447)
.++++|.|+|+++||+|+ .|++.++.+. +. .|+.+++|.+ +|+ .+..+++|..+++|+++|+++|++. |+
T Consensus 158 -~~~g~i~~~~~~dEE~g~-~G~~~~~~~~-~~-~d~~~~~~~~--~~~---~i~~~~~G~~~~~v~v~Gk~aHa~~~p~ 228 (404)
T PRK13381 158 -VEHGDIVVAFVPDEEIGL-RGAKALDLAR-FP-VDFAYTIDCC--ELG---EVVYENFNAASAEITITGVTAHPMSAKG 228 (404)
T ss_pred -CCCCCEEEEEEccccccc-ccHHHHHHhc-CC-CCEEEEecCC--Ccc---eEEEecCcceEEEEEEEeEecCCCCCcc
Confidence 467899999999999986 6999997653 33 5778887755 343 4677899999999999999999875 78
Q ss_pred CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHH
Q 013216 230 DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAES 308 (447)
Q Consensus 230 ~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~ 308 (447)
.| |||..+++++.+|+.+..... ......+++++.+++ .|++|++.+|+|+.|.++.+.
T Consensus 229 ~g~NAI~~a~~~i~~l~~~~~~~~--------~~~~~~~i~v~~i~g------------~p~~~~~~~diR~~~~~~~e~ 288 (404)
T PRK13381 229 VLVNPILMANDFISHFPRQETPEH--------TEGREGYIWVNDLQG------------NVNKAKLKLIIRDFDLDGFEA 288 (404)
T ss_pred cCcCHHHHHHHHHHhCCccCCCCC--------CCCcccEEEEEeEEe------------CcceEEEEEEEecCCHHHHHH
Confidence 78 999999999999876532110 001112344444332 289999999999999999999
Q ss_pred HHHHHHHHhccC--CCC-ceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHH
Q 013216 309 LERRIVEEWAPA--SRN-MTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYF 385 (447)
Q Consensus 309 i~~~i~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~ 385 (447)
+.++|+++++.. ..+ .+++ +... .....|.. .+..++++++.+++++++.+..+ ....+.+++|+++|
T Consensus 289 i~~~i~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~-~~~~~~~lv~~l~~a~~~~g~~~-~~~~~~g~tDa~~~ 359 (404)
T PRK13381 289 RKQFIEEVVAKINAKYPTARVS---LTLT----DQYSNISN-SIKDDRRAVDLAFDAMKELGIEP-KVIPMRGGTDGAAL 359 (404)
T ss_pred HHHHHHHHHHHHHHHcCCcEEE---EEEE----eCCchhhc-ccccCHHHHHHHHHHHHHcCCCe-eeccCCccchHHHH
Confidence 999998887632 222 3344 3210 01111222 35668999999999998876543 33456789999999
Q ss_pred HHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 386 RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 386 ~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
...|+|++.|||+.. .+|++|||++++++.+++++|..++..+++
T Consensus 360 ~~~giP~v~~GpG~~---~aH~~dE~v~i~~l~~~~~v~~~~~~~~~~ 404 (404)
T PRK13381 360 SAKGLPTPNLFTGAH---NFHSRFEFLPVSSFVKSYEVTITICLLAAK 404 (404)
T ss_pred hcCCCCeEEECcccc---CCcCcceeEEHHHHHHHHHHHHHHHHHhcC
Confidence 988999999999975 489999999999999999999999988764
|
|
| >TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=381.53 Aligned_cols=333 Identities=23% Similarity=0.294 Sum_probs=267.7
Q ss_pred HHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCCCCCCc
Q 013216 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111 (447)
Q Consensus 32 ~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W~~ 111 (447)
++|++|++|||.| ++|.++++||.++|+++|+++. .+ ...|+++.. +. +.|+|+|+|||||||.
T Consensus 1 ~~l~~lv~i~s~s--~~e~~~~~~l~~~l~~~g~~~~-~~---~~~~~~~~~-~~--~~~~i~~~~H~D~vp~------- 64 (336)
T TIGR01902 1 ELLKDLLEIYSPS--GKEANAAKFLEEISKDLGLKLI-ID---DAGNFILGK-GD--GHKKILLAGHVDTVPG------- 64 (336)
T ss_pred ChHHHHhcCCCCC--cchHHHHHHHHHHHHHcCCEEE-EC---CCCcEEEEe-CC--CCceEEEEccccccCC-------
Confidence 3689999999986 7889999999999999999874 23 334888865 33 3589999999999985
Q ss_pred CCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEE
Q 013216 112 HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVL 191 (447)
Q Consensus 112 ~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~ 191 (447)
+|...++ ||++||||++|||++++++|.|++.|.+.+ .+|.|++++|||+|+ .|++.++++.. .+++++.
T Consensus 65 -~~~~~~~-~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~-~G~~~~~~~~~---~~~~ii~ 134 (336)
T TIGR01902 65 -YIPVKIE-GGLLYGRGAVDAKGPLIAMIFATWLLNEKG----IKVIVSGLVDEESSS-KGAREVIDKNY---PFYVIVG 134 (336)
T ss_pred -CcccEEe-CCEEEEecccCCCcHHHHHHHHHHHHHhCC----CcEEEEEEeCcccCC-ccHHHHHhhcC---CCEEEEe
Confidence 3556776 999999999999999999999999997643 589999999999986 79999988643 2355665
Q ss_pred ecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHH-hchhhhHHHHHhccccCCCcceeee
Q 013216 192 DEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVR-RFRASQFDLVKAGLKAEGEVVSVNM 270 (447)
Q Consensus 192 d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~-~~~~~~~~~~~~~~~~~~~~~t~~~ 270 (447)
+|++...++.++||..+++++++|+++|+|.|. +|+..+..+++.|. .+... . .-+.+++++
T Consensus 135 -----ept~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~--~ai~~~~~~~~~l~~~~~~~--------~--~~~~~~~~~ 197 (336)
T TIGR01902 135 -----EPSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG--NAAELLIDYSKKIIEVYKQP--------E--NYDKPSIVP 197 (336)
T ss_pred -----cCCCCcceeeeeeeEEEEEEEEEecCcccCCCh--hHHHHHHHHHHHHHHHhccc--------c--CCCCCccee
Confidence 466545689999999999999999999999765 68999999888886 22210 0 001246778
Q ss_pred eeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccC
Q 013216 271 AFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATD 350 (447)
Q Consensus 271 ~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 350 (447)
+.+++|. ..|+||++|++++|+|+.|.++.+++.++|++. ..++++ +. ....|. .++
T Consensus 198 ~~i~gg~------~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~~-----~~~~~~---~~-------~~~~p~--~~~ 254 (336)
T TIGR01902 198 TIIRFGE------SYNDTPAKLELHFDLRYPPNNKPEEAIKEITDK-----FPICLE---IV-------DETPPY--KVS 254 (336)
T ss_pred EEEEccC------CCcCCCceEEEEEEEeeCCCCCHHHHHHHHHhc-----cCceEE---EE-------eccCce--ecC
Confidence 8888776 899999999999999999999999998888751 123333 22 233343 356
Q ss_pred CCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHc-CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 013216 351 SSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER-GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIK 429 (447)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~-g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~ 429 (447)
.++|+++.+++++++.+..+ .+....|++|++++.+. |+|++.|||+... .+|++||+++++++.+++++|..++.
T Consensus 255 ~~~~lv~~~~~a~~~~~~~~-~~~~~~g~tD~~~~~~~~g~p~v~~Gpg~~~--~aH~~nE~v~i~~l~~~~~~~~~~l~ 331 (336)
T TIGR01902 255 RNNPLVRAFVRAIRKQGMKP-RLKKKTGTSDMNILAPIWTVPMVAYGPGDST--LDHTPQEKISLAEYLIGIKTLMLAIE 331 (336)
T ss_pred CCCHHHHHHHHHHHHcCCCe-EEeeccccCccceeccccCCCeEEECCCCcc--cCCCCcceeEHHHHHHHHHHHHHHHH
Confidence 78999999999999987543 44456788999999886 9999999998754 68999999999999999999999999
Q ss_pred HHHh
Q 013216 430 AYAS 433 (447)
Q Consensus 430 ~l~~ 433 (447)
.++.
T Consensus 332 ~l~~ 335 (336)
T TIGR01902 332 ELWQ 335 (336)
T ss_pred HHhc
Confidence 8854
|
This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade. |
| >PRK07318 dipeptidase PepV; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=397.72 Aligned_cols=370 Identities=19% Similarity=0.274 Sum_probs=273.8
Q ss_pred CCChhHHHHHHHhhhcccCCCCC----------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeE
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPN----------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~----------~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i 93 (447)
+.+.++++++|++|++|||+++. .++.++++|+.++|+++|++++.++ |+++.+.... +.++|
T Consensus 10 ~~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~------n~~~~~~~~~-~~~~l 82 (466)
T PRK07318 10 EKRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD------NYAGHIEYGE-GEEVL 82 (466)
T ss_pred HHhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec------CccceEEECC-CCCEE
Confidence 45778999999999999999743 2467899999999999999988554 5565554222 34789
Q ss_pred EEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCH
Q 013216 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (447)
Q Consensus 94 ll~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (447)
+|+||+||||++ ..|+++||.++++ ||+|||||++|||+++++++.|++.|++.+..++++|.|+|++|||+|+ .|+
T Consensus 83 ~l~gH~DvVp~~-~~W~~~Pf~~~~~-dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~-~G~ 159 (466)
T PRK07318 83 GILGHLDVVPAG-DGWDTDPYEPVIK-DGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGW-KCM 159 (466)
T ss_pred EEEEecCCCCCC-CCCCCCCcceEEE-CCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCc-hhH
Confidence 999999999987 4799999999997 9999999999999999999999999999888888999999999999987 799
Q ss_pred HHHHccccccCCceEEEEecCC----cC----------------------------cCCc--------------------
Q 013216 174 EKFADSHVFNSLNVGIVLDEGL----AS----------------------------TTED-------------------- 201 (447)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~d~g~----~~----------------------------p~~~-------------------- 201 (447)
+++++.+... ++.++.|... .+ +++.
T Consensus 160 ~~l~~~~~~~--~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~ 237 (466)
T PRK07318 160 DYYFEHEEAP--DFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLIAA 237 (466)
T ss_pred HHHHHhCCCC--CEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcCccceecCcccEEEEecCCHHHHHHH
Confidence 9999864221 2222222100 00 1100
Q ss_pred ---ceeEeeeeeeE-----EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhh--hHHHHHh-------------
Q 013216 202 ---YRAFYAERCPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRAS--QFDLVKA------------- 257 (447)
Q Consensus 202 ---~~i~~~~~G~~-----~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~--~~~~~~~------------- 257 (447)
+.+..++||.. +++|+++|+++|++.|+.| |||..++++|..|...... .++.+..
T Consensus 238 ~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (466)
T PRK07318 238 FEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLGI 317 (466)
T ss_pred HHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCCC
Confidence 00112567755 7999999999999999999 9999999999988642110 0111100
Q ss_pred -ccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeecccccccc
Q 013216 258 -GLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRAS 336 (447)
Q Consensus 258 -~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 336 (447)
........+|++++.+++|. .. .|++.+|+|+.|..+.+++.++|++.++. .+++++ +.
T Consensus 318 ~~~~~~~g~~t~nvg~i~gg~------~~-----~~~~~iDiR~~p~~~~~~v~~~i~~~~~~--~~~~~~---~~---- 377 (466)
T PRK07318 318 AYEDDVMGDLTMNVGVFSFDE------EK-----GGTLGLNFRYPVGTDFEKIKAKLEKLIGV--TGVELS---EH---- 377 (466)
T ss_pred cccCCCccCeEEEeeEEEEec------Cc-----EEEEEEEEeCCCCCCHHHHHHHHHHHHHh--cCeEEE---Ec----
Confidence 00001123578888888764 21 79999999999999999999999888753 234443 22
Q ss_pred ccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHH
Q 013216 337 LHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAE 416 (447)
Q Consensus 337 ~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~ 416 (447)
....|.. .+.++++++.+++++++..+..+.+..++|++|++++.. ++|...++|+.. .++|++||++++++
T Consensus 378 ---~~~~p~~--~~~d~~lv~~l~~a~~~~~g~~~~~~~~~ggtDa~~~~~-~i~~Gp~~pg~~--~~aH~~dE~v~i~~ 449 (466)
T PRK07318 378 ---EHQKPHY--VPKDDPLVKTLLKVYEKQTGLKGEEQVIGGGTYARLLKR-GVAFGAMFPGSE--DTMHQANEYIEIDD 449 (466)
T ss_pred ---cCCCcee--eCCCCHHHHHHHHHHHHHhCCCCCeeEEcchHhHhhCCC-eEEeCCCCCCCC--CCCcCCCcceeHHH
Confidence 2333433 466899999999999986544435566788999999964 444222224433 25899999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013216 417 YLKGIDIYESIIKAYAS 433 (447)
Q Consensus 417 l~~~~~~~~~~l~~l~~ 433 (447)
+.+++++|..++..+++
T Consensus 450 l~~~~~v~~~~l~~~~~ 466 (466)
T PRK07318 450 LIKAAAIYAEAIYELAK 466 (466)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998863
|
|
| >PLN02280 IAA-amino acid hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=385.71 Aligned_cols=367 Identities=14% Similarity=0.130 Sum_probs=283.6
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~ 106 (447)
.+.+.++.+.++++|+. +++|.+++++|.++|+++|++++... +..|+++.+ |.++ .|+|+|+||||+||+++
T Consensus 96 ~~~l~~l~r~lh~~PEl--s~~E~~t~~~i~~~L~~~G~~~~~~~---~~~~vva~~-g~~~-~~~I~l~gh~DaVP~~e 168 (478)
T PLN02280 96 VAWLKSVRRKIHENPEL--AFEEYKTSELVRSELDRMGIMYRYPL---AKTGIRAWI-GTGG-PPFVAVRADMDALPIQE 168 (478)
T ss_pred HHHHHHHHHHHhcCCCC--CCcHHHHHHHHHHHHHHCCCeEEecC---CCCEEEEEE-CCCC-CCEEEEEEecCCCcccC
Confidence 45566677778888886 48999999999999999999987532 567999998 5433 38999999999999976
Q ss_pred -CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCC
Q 013216 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (447)
Q Consensus 107 -~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (447)
.+|+++| ++ +|++|||| +|+++|+++.|++.|.+.+.+++++|.|+|++|||+| .|++++++++.+++.
T Consensus 169 ~~~w~~~p----~~-~G~~h~cG---hd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g--~Ga~~li~~g~~~~~ 238 (478)
T PLN02280 169 AVEWEHKS----KV-AGKMHACG---HDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAG--NGAKRMIGDGALDDV 238 (478)
T ss_pred CCCCCCCC----CC-CCeEEeCC---CcHHHHHHHHHHHHHHhccccCCceEEEEeccccccc--chHHHHHHCCCCcCC
Confidence 6799999 44 89999999 3569999999999998887778999999999999986 399999999888777
Q ss_pred ceEEEEecCCcCcCCcc--eeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccC
Q 013216 186 NVGIVLDEGLASTTEDY--RAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (447)
Q Consensus 186 ~~~~~~d~g~~~p~~~~--~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 262 (447)
|..+.++.+..+|++.. ......+|..+++|+++|+++|++.|+.| ||+..+++++..|+.+.... ...
T Consensus 239 d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~--------~~~ 310 (478)
T PLN02280 239 EAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSRE--------ANP 310 (478)
T ss_pred CEEEEEecCCCCCCceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcc--------cCC
Confidence 77777765433443211 11223459999999999999999999999 99999999999987753211 011
Q ss_pred CCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeecccccccccccc
Q 013216 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDK 340 (447)
Q Consensus 263 ~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 340 (447)
....+++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|+++++. ..++++++ ++.. .
T Consensus 311 ~~~~tvnvg~I~GG~------~~NvIPd~~~l~~diR~~~~e~~e~l~~~I~~~~~~~a~~~g~~~~---v~~~-----~ 376 (478)
T PLN02280 311 LDSQVVSVTTMDGGN------NLDMIPDTVVLGGTFRAFSNTSFYQLLKRIQEVIVEQAGVFRCSAT---VDFF-----E 376 (478)
T ss_pred CCCcEEEEEEEEccC------CCCEeCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEE---EEEe-----c
Confidence 123588999999887 999999999999999999999999999999988763 23455554 3310 1
Q ss_pred CCCCcccccCCCChHHHHHHHHHHHhcCCC--CCceecCCCcchHHHHHcCCCeEEE--ccCCC---CCCCCCCCCcccc
Q 013216 341 FGRPILTATDSSNPWWNLLEEAVRKANGKL--GKPEIFPASTDARYFRERGLPAIGF--SPMAN---TPILLHDHNEFLN 413 (447)
Q Consensus 341 ~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~g~~D~~~~~~~g~p~~~~--gp~~~---~~~~~H~~~E~v~ 413 (447)
...+.++++.++.++++.++++..+..+.. .......|++|+++|... +|++.| |++.. .....|+++|+++
T Consensus 377 ~~~~~~pp~~n~~~l~~~~~~~a~~~~G~~~~~~~~~~~g~tD~~~~~~~-vP~i~~glG~~~~~~G~~~~~Htp~e~id 455 (478)
T PLN02280 377 KQNTIYPPTVNNDAMYEHVRKVAIDLLGPANFTVVPPMMGAEDFSFYSQV-VPAAFYYIGIRNETLGSTHTGHSPYFMID 455 (478)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHhcCccccccCCCCeeechHHHHHhh-CCEEEEEEeecCCCCCCCCCCCCCCCcCC
Confidence 112223345668899999999887764432 111234688999999985 998866 44321 1126899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013216 414 QAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 414 ~~~l~~~~~~~~~~l~~l~~ 433 (447)
+++|..++++|+.++..+..
T Consensus 456 ~~~L~~~~~~~~~~~~~~l~ 475 (478)
T PLN02280 456 EDVLPIGAAVHAAIAERYLI 475 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988764
|
|
| >PRK06156 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=387.69 Aligned_cols=372 Identities=20% Similarity=0.310 Sum_probs=275.4
Q ss_pred CChhHHHHHHHhhhcccCCCCC---CCh----hHHHHHHHHHHHHCCCceEEEeecCCCCeEE--EEecCCCCCCCeEEE
Q 013216 25 KSDDSIIERFRAYLQIDTSQPN---PDY----TNASKFILAQAEALSLESQTLEFAKNKPLIL--LKWPGSNPQLPSILL 95 (447)
Q Consensus 25 ~~~~~~~~~l~~l~~ips~s~~---~~e----~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~--~~~~g~~~~~~~ill 95 (447)
++.++++++|++|++|||+|+. ++| ..+++||.++|+++|++++.. + |++ +.++|. +.|+|+|
T Consensus 43 ~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~----~--~~v~~~~~~g~--~~~~l~l 114 (520)
T PRK06156 43 KYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNV----D--NRVLEIGLGGS--GSDKVGI 114 (520)
T ss_pred hhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEec----C--CeEEEEEecCC--CCCeEEE
Confidence 4567899999999999999742 122 356789999999999988632 2 444 566654 3489999
Q ss_pred eeccccCCCCCCCCCc-----CCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcc
Q 013216 96 NSHTDVVPSEPSKWSH-----HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170 (447)
Q Consensus 96 ~~H~Dtvp~~~~~W~~-----~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 170 (447)
.|||||||+++..|++ +||.+.++ ||++||||++|||+++++++.|++.|.+.+.+++++|.|+|++|||.|+
T Consensus 115 ~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~-~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~- 192 (520)
T PRK06156 115 LTHADVVPANPELWVLDGTRLDPFKVTLV-GDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDG- 192 (520)
T ss_pred EEecCccCCCCccCccCCccCCCCceEEE-CCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCc-
Confidence 9999999998788999 99999997 9999999999999999999999999999888888999999999999987
Q ss_pred cCHHHHHccccccCCceEEEEecCC----cCcCC----------------------------------cc----------
Q 013216 171 DGAEKFADSHVFNSLNVGIVLDEGL----ASTTE----------------------------------DY---------- 202 (447)
Q Consensus 171 ~G~~~~~~~~~~~~~~~~~~~d~g~----~~p~~----------------------------------~~---------- 202 (447)
.|++.++.++.. .++.+++|... .+|+. ..
T Consensus 193 ~G~~~~~~~~~~--~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~~~~ 270 (520)
T PRK06156 193 DPLKYYLERYTP--PDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGDPAA 270 (520)
T ss_pred hhHHHHHHhcCC--CCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCCHHH
Confidence 699999876432 24444444210 01110 00
Q ss_pred ----------eeEeeeeeeE---------EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchh-hhH----HHHHh
Q 013216 203 ----------RAFYAERCPW---------WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRA-SQF----DLVKA 257 (447)
Q Consensus 203 ----------~i~~~~~G~~---------~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~-~~~----~~~~~ 257 (447)
....+++|.. +++|+++|+++|+|.|+.| |||..+++++..|+++.. ... +.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~~ 350 (520)
T PRK06156 271 LAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDGDLPHNHAADAARYIND 350 (520)
T ss_pred HHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 0011223443 8999999999999999999 999999999999876211 100 11110
Q ss_pred --cc------------ccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC--C
Q 013216 258 --GL------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--S 321 (447)
Q Consensus 258 --~~------------~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~ 321 (447)
+. ......++++++.+++|. +.|++.+|+|++|.++.+++.++|++.++.. .
T Consensus 351 ~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~gg~------------~~~~l~iDiR~~p~~~~eev~~~I~~~i~~~~~~ 418 (520)
T PRK06156 351 LVGLDYLGEKFGVAYKDDFMGPLTLSPTVVGQDD------------KGTEVTVNLRRPVGKTPELLKGEIADALAAWQAK 418 (520)
T ss_pred hhCCCCccCcCCccccCCCccCcEEeeeEEEEeC------------CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 00 000012345555555442 5899999999999999999999999887632 2
Q ss_pred CCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCC
Q 013216 322 RNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANT 401 (447)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~ 401 (447)
.+++++ +.. ....|. ..+.++|+++.+.+++++..+..+.+..++|+||++++. +++.|||+..+
T Consensus 419 ~gv~ve---~~~------~~~~p~--~~~~d~~lv~~l~~a~~~~~G~~~~~~~~~ggTDa~~~~----~~v~fGP~~~g 483 (520)
T PRK06156 419 HQVALD---IDY------YWGEPM--VRDPKGPWLKTLLDVFGHFTGLDAKPVAIAGSTNAKLFP----NAVSFGPAMPG 483 (520)
T ss_pred cCceEE---Eee------cCCCce--eeCCCCHHHHHHHHHHHHHhCCCCceeeecChhhhhhCC----ccEEEcCCCCC
Confidence 344455 321 122333 356689999999999998866544666778999999874 58999997332
Q ss_pred -CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhhc
Q 013216 402 -PILLHDHNEFLNQAEYLKGIDIYESIIKAYASYV 435 (447)
Q Consensus 402 -~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~~ 435 (447)
...+|++||+++++++.+++++|..++..+++++
T Consensus 484 ~~~~aHt~dE~V~ie~l~~~~~i~~~~l~~l~~~~ 518 (520)
T PRK06156 484 VKYTGHTENEFKTVEQFMLDLQMYTEMLIRIGNLP 518 (520)
T ss_pred CCCCCcCcccCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 2358999999999999999999999999998743
|
|
| >PLN02693 IAA-amino acid hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=373.93 Aligned_cols=365 Identities=17% Similarity=0.148 Sum_probs=283.0
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC
Q 013216 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~ 105 (447)
..+++++++++|+++|+.| ++|.+++++|.++|+++|++++. . .+.+|+++.+ |.++ +|+|+|+|||||||++
T Consensus 45 ~~~~~~~~r~~lh~~PE~s--~~E~~ta~~i~~~L~~~G~~~~~-~--~~~~~via~~-g~~~-g~~i~l~~h~DaVp~~ 117 (437)
T PLN02693 45 VFDWMVRIRRKIHENPELG--YEEFETSKLIRSELDLIGIKYRY-P--VAITGIIGYI-GTGE-PPFVALRADMDALPIQ 117 (437)
T ss_pred hHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHHHHCCCeeEe-c--CCCcEEEEEE-CCCC-CCEEEEEeecCCCcCC
Confidence 3467899999999999985 89999999999999999998763 2 1567999998 4333 4899999999999997
Q ss_pred C-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccC
Q 013216 106 P-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (447)
Q Consensus 106 ~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (447)
+ .+|+++||. +|++|||| ||+++|+++.|++.|.+.+..++++|.|+|+++||. + .|++.+++++.+++
T Consensus 118 e~~~~~~~p~~-----~G~~hacG---hkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~-~-~Ga~~~i~~g~~~~ 187 (437)
T PLN02693 118 EAVEWEHKSKI-----PGKMHACG---HDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEG-L-SGAKKMREEGALKN 187 (437)
T ss_pred CCCCCCCCCCC-----CCCEECCc---chHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccc-h-hhHHHHHHCCCCCC
Confidence 6 679999983 79999766 699999999999999988766789999999999994 3 59999999887765
Q ss_pred CceEEEEecCCcCcCCcceeEe----eeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhcc
Q 013216 185 LNVGIVLDEGLASTTEDYRAFY----AERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (447)
Q Consensus 185 ~~~~~~~d~g~~~p~~~~~i~~----~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~ 259 (447)
.+..+..+.....+.+ .+.. ..+|..+++|+++|+++|+|.|+.| |||..+++++.+|+.+.....
T Consensus 188 ~~~iig~h~~p~~~~g--~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~------- 258 (437)
T PLN02693 188 VEAIFGIHLSPRTPFG--KAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRET------- 258 (437)
T ss_pred CCEEEEEecCCCCCCe--eEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccC-------
Confidence 5655544432111211 1221 1468889999999999999999999 999999999999987632110
Q ss_pred ccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccccccc
Q 013216 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASL 337 (447)
Q Consensus 260 ~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~ 337 (447)
.+....+++++.+++|. +.|+||++|++.+|+|+.+. .+.+.++|+++++. ..++.+++ ++..
T Consensus 259 -~~~~~~ti~vg~i~GG~------~~NvVPd~a~~~~diR~~~~--~~~i~~~i~~i~~~~a~~~g~~~e---~~~~--- 323 (437)
T PLN02693 259 -DPLDSKVVTVSKVNGGN------AFNVIPDSITIGGTLRAFTG--FTQLQQRIKEIITKQAAVHRCNAS---VNLT--- 323 (437)
T ss_pred -CCCCCcEEEEEEEEcCC------CCceECCeEEEEEEEecCCH--HHHHHHHHHHHHHHHHHHhCCcEE---EEEe---
Confidence 01123689999999887 99999999999999999986 46888999888763 23455555 3310
Q ss_pred cccCCCCcccccCCCChHHHHHHHHHHHhcCCCCC--ceecCCCcchHHHHHcCCCeE--EEccCCCC--CCCCCCCCcc
Q 013216 338 HDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGK--PEIFPASTDARYFRERGLPAI--GFSPMANT--PILLHDHNEF 411 (447)
Q Consensus 338 ~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~g~~D~~~~~~~g~p~~--~~gp~~~~--~~~~H~~~E~ 411 (447)
....|++.++.++.++++.+.+++++..+.... .....|++|++++.+ .+|.+ .+|++... ....|+|+|+
T Consensus 324 --~~~~~~~~~~~nd~~l~~~~~~~~~~~~G~~~~~~~~~~~gseDf~~~~~-~vP~~~~~lG~~~~~~~~~~~H~~~f~ 400 (437)
T PLN02693 324 --PNGREPMPPTVNNMDLYKQFKKVVRDLLGQEAFVEAAPEMGSEDFSYFAE-TIPGHFSLLGMQDETNGYASSHSPLYR 400 (437)
T ss_pred --ecCccCCCCccCCHHHHHHHHHHHHHhcCCcceeecCCCceechHHHHHH-HhhhhEEEEecCCCCCCCCCCCCCCcC
Confidence 123445556777889999999999997553311 223458999999998 48875 66665211 1368999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Q 013216 412 LNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 412 v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
++.+.+..++++|+.++..+++.
T Consensus 401 ~de~~l~~~~~~~~~~~~~~l~~ 423 (437)
T PLN02693 401 INEDVLPYGAAIHATMAVQYLKE 423 (437)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988654
|
|
| >PRK08554 peptidase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=376.65 Aligned_cols=375 Identities=20% Similarity=0.222 Sum_probs=266.4
Q ss_pred HHHHHHHhhhcccCCCCCC----ChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCC
Q 013216 29 SIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (447)
Q Consensus 29 ~~~~~l~~l~~ips~s~~~----~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~ 104 (447)
+++++|++|++|||+++.. .+.++++++.++|+++|++++.++.. +.+|+++.+ |. +.++|+|.|||||||+
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~-~~~~l~~~~-~~--~~~~l~l~gH~DtVp~ 77 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKD-GYYAVYGEI-GE--GKPKLLFMAHFDVVPV 77 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecC-CceEEEEEe-CC--CCCEEEEEeccccCCC
Confidence 5789999999999987322 26789999999999999998876643 567999997 43 2378999999999999
Q ss_pred CCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccc--cc
Q 013216 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VF 182 (447)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~ 182 (447)
+++.|+++||.+.++ ||++||||++|||++++++|.|++.|.+.+ ++++|.|+|++|||+|+. +...+++.. ..
T Consensus 78 ~~~~w~~~Pf~~~~~-~g~lyGrG~~DmKgg~aa~l~A~~~l~~~~--~~~~i~l~~~~dEE~g~~-~~~~~~~~~~~~~ 153 (438)
T PRK08554 78 NPEEWNTEPFKLTVK-GDKAYGRGSADDKGNVASVMLALKELSKEP--LNGKVIFAFTGDEEIGGA-MAMHIAEKLREEG 153 (438)
T ss_pred CccccccCCceeEEE-CCEEEECCcccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccCcc-ccHHHHHHHHhcC
Confidence 876799999999997 999999999999999999999999997743 678999999999999874 444655432 11
Q ss_pred cCCceEEEEecCCcCcCCcceeEeeeeee-------------------EEEEEEEeec-CCccCCCCCC---CHHHHHHH
Q 013216 183 NSLNVGIVLDEGLASTTEDYRAFYAERCP-------------------WWLVIKARGA-PGHGAKLYDN---SAMENLFK 239 (447)
Q Consensus 183 ~~~~~~~~~d~g~~~p~~~~~i~~~~~G~-------------------~~~~i~v~G~-~~Hs~~p~~g---nai~~~~~ 239 (447)
...+++++.+ |+....++.+++|. .++.+++.|. .+|++.+..+ +++..+++
T Consensus 154 ~~~~~~iv~E-----pt~~~~~~~~~kg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~ 228 (438)
T PRK08554 154 KLPKYMINAD-----GIGMKPIIRRRKGFGVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASH 228 (438)
T ss_pred CCCCEEEEeC-----CCCCcchhhcCCceEEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHHHHHH
Confidence 2357778775 44322222333333 2333444454 4999987665 45777776
Q ss_pred HHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCC---C--------------------------CCcccccc--
Q 013216 240 SIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPS---P--------------------------NGFVMNLQ-- 288 (447)
Q Consensus 240 ~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~---~--------------------------~~~~~n~i-- 288 (447)
++..+..+.......... ........++++.....|... . -+...|++
T Consensus 229 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~g~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~i 307 (438)
T PRK08554 229 FLRESNVLAVSLEGKFLK-GNVVPGEVTLTYLEPGEGEEVEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNVYSF 307 (438)
T ss_pred HHhhcCceEEEEeeeeee-cCcccceeEEEEecCCCCccccccccHHHHHHHHHHHHHHhhccccccccceeeccceEEe
Confidence 665554321000000000 000000112222221112100 0 01155666
Q ss_pred -CCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhc
Q 013216 289 -PSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKAN 367 (447)
Q Consensus 289 -P~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~ 367 (447)
|+.|++.+|+|+.+ .+.+++.++|++.++...++++++ +.. ....|.. .++.++++++.+++++++.+
T Consensus 308 ~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~~~~~~---~~~------~~~~~~~-~~~~~~~lv~~~~~~~~~~g 376 (438)
T PRK08554 308 AEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLPEAEVE---IRT------NEKAGYL-FTPPDEEIVKVALRVLKELG 376 (438)
T ss_pred cCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCCCceEE---EEe------ccCCCCc-CCCCChHHHHHHHHHHHHhC
Confidence 99999999999988 689999999998886433455555 431 1122332 35678999999999999976
Q ss_pred CCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013216 368 GKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 368 ~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~ 432 (447)
... .+...+|+||+++++..|+|++.|||+.. +.|++|||++++++.+++++|.+++..|+
T Consensus 377 ~~~-~~~~~~GgtDa~~~~~~Gip~v~~Gp~~~---~~H~~~E~v~i~~l~~~~~i~~~~i~~l~ 437 (438)
T PRK08554 377 EDA-EPVEGPGASDSRYFTPYGVKAIDFGPKGG---NIHGPNEYVEIDSLKKMPEVYKRIALRLL 437 (438)
T ss_pred CCc-EEEecCCchHHHHHHhcCCCceEECCCCC---CCCCCcceEEHHHHHHHHHHHHHHHHHHh
Confidence 544 66777899999999999999999999865 59999999999999999999999998875
|
|
| >PRK05469 peptidase T; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=380.99 Aligned_cols=363 Identities=20% Similarity=0.194 Sum_probs=276.2
Q ss_pred hHHHHHHHhhhcccCCCCC--------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC-CCCCeEEEeec
Q 013216 28 DSIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN-PQLPSILLNSH 98 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~~--------~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~-~~~~~ill~~H 98 (447)
+++++.|++|++|||+|.. .++.+++++|.++|+++|++...++ ..+||++.++|+. ++.|+|+|+||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~---~~~~v~~~~~g~~~~~~~~i~l~~H 78 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLD---ENGYVMATLPANVDKDVPTIGFIAH 78 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEC---CCeEEEEEecCCCCCCCCeEEEEEe
Confidence 5789999999999999733 3478999999999999999743343 3458999998753 34599999999
Q ss_pred cccCCCCC----------------------CCCCcCCCceeeC---CCCcEEecCc----ccchhHHHHHHHHHHHHHHc
Q 013216 99 TDVVPSEP----------------------SKWSHHPFGAHLD---SQGNIFARGS----QDMKCVGMQYLEAIRRLKAS 149 (447)
Q Consensus 99 ~Dtvp~~~----------------------~~W~~~Pf~~~~~---~~g~l~GrG~----~D~k~~~a~~l~a~~~l~~~ 149 (447)
|||||+.+ ..|.++||.+... ..+.+||||+ +|||++++++|.|++.|.+.
T Consensus 79 ~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~ 158 (408)
T PRK05469 79 MDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAH 158 (408)
T ss_pred ccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhC
Confidence 99998754 2344555554443 1267999998 99999999999999999888
Q ss_pred CCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCC-C
Q 013216 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-L 228 (447)
Q Consensus 150 ~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~-p 228 (447)
+..++++|+|+|+++||+| .|++.++.+. + ..++.++++.+ +.+ .+..+.+|..+++|+++|+++|++. |
T Consensus 159 ~~~~~g~v~~~f~~dEE~g--~Ga~~~~~~~-~-~~~~~~~~~~~---~~g--~~~~~~~g~~~~~i~v~Gk~~Ha~~~p 229 (408)
T PRK05469 159 PEIKHGDIRVAFTPDEEIG--RGADKFDVEK-F-GADFAYTVDGG---PLG--ELEYENFNAASAKITIHGVNVHPGTAK 229 (408)
T ss_pred CCCCCCCEEEEEecccccC--CCHHHhhhhh-c-CCcEEEEecCC---Ccc--eEEeccCceeEEEEEEeeecCCCCCCc
Confidence 7667899999999999986 4998886432 2 24667777642 333 4667789999999999999999875 7
Q ss_pred CCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHH
Q 013216 229 YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAE 307 (447)
Q Consensus 229 ~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~ 307 (447)
+.| ||+..+++++..|+.+.... .......+++++.++ ..|++|++.+|+|+.+.++.+
T Consensus 230 ~~g~nAi~~~~~~i~~l~~~~~~~--------~~~~~~~~i~~g~i~------------ggp~~~~i~~diR~~~~e~~e 289 (408)
T PRK05469 230 GKMVNALLLAADFHAMLPADETPE--------TTEGYEGFYHLTSIK------------GTVEEAELSYIIRDFDREGFE 289 (408)
T ss_pred ccccCHHHHHHHHHHhCCCCCCCC--------CCCCceEEEEEEEEE------------EccceEEEEEEEecCCHHHHH
Confidence 888 99999999999887543210 000111234444444 347999999999999999999
Q ss_pred HHHHHHHHHhccC--CC-CceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHH
Q 013216 308 SLERRIVEEWAPA--SR-NMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARY 384 (447)
Q Consensus 308 ~i~~~i~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~ 384 (447)
.+.++|+++++.. .+ +.+++ ++.. ..+.+....+..++++++.+++++++.+... ....+.|++|+++
T Consensus 290 ~i~~~i~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~lv~~~~~a~~~~g~~~-~~~~~~ggtD~~~ 360 (408)
T PRK05469 290 ARKALMQEIAKKVNAKYGEGRVE---LEIK-----DQYYNMREKIEPHPHIVDLAKQAMEDLGIEP-IIKPIRGGTDGSQ 360 (408)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEE---EEEe-----ehhhhhhhhhcCCHHHHHHHHHHHHHcCCCc-EEecCCCcccHHH
Confidence 9999999888742 12 34444 3210 1222222246778999999999999876443 3345679999999
Q ss_pred HHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhh
Q 013216 385 FRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 385 ~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
|...|+|++.|||+.. ..|++||+++++++.+++++|..++..++..
T Consensus 361 ~~~~giP~v~~gpG~~---~~H~~~E~v~i~~l~~~~~~~~~~~~~~~~~ 407 (408)
T PRK05469 361 LSFMGLPCPNIFTGGH---NFHGKFEFVSLESMEKAVEVIVEIAELTAER 407 (408)
T ss_pred HhhCCCceEEECcCcc---cCcCcceeeEHHHHHHHHHHHHHHHHHHhcC
Confidence 9988999999999864 5999999999999999999999999888754
|
|
| >TIGR01887 dipeptidaselike dipeptidase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=368.95 Aligned_cols=360 Identities=19% Similarity=0.277 Sum_probs=262.9
Q ss_pred hHHHHHHHhhhcccCCC----CC------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEec-CCCCCCCeEEEe
Q 013216 28 DSIIERFRAYLQIDTSQ----PN------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP-GSNPQLPSILLN 96 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s----~~------~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~-g~~~~~~~ill~ 96 (447)
++++++|++|++|||+| +. .++.++++++.++|+++|++++.+. |+.+... +. +.|+|+|+
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~------~~~~~~~~~~--~~~~l~l~ 73 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVD------NYAGYAEYGQ--GEEYLGIL 73 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEec------CceEEEEeCC--CCCeEEEE
Confidence 47899999999999997 21 1246899999999999999987443 3333322 22 34789999
Q ss_pred eccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHH
Q 013216 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (447)
Q Consensus 97 ~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (447)
|||||||+++ .|+++||+++++ ||+|||||++|||+++++++.|++.|.+.+.+++++|.|+|++|||+|+ .|++.+
T Consensus 74 gH~D~Vp~~~-~W~~~Pf~~~~~-~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g~~~~ 150 (447)
T TIGR01887 74 GHLDVVPAGD-GWTSPPFEAEIK-DGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGW-ACIDYY 150 (447)
T ss_pred eecCCCCCCC-CCcCCCCceEEE-CCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCc-HhHHHH
Confidence 9999999975 799999999997 9999999999999999999999999999888889999999999999986 699988
Q ss_pred HccccccC----Cce---EEEEecC----------------------CcCcCCcc----eeEeeee--------------
Q 013216 177 ADSHVFNS----LNV---GIVLDEG----------------------LASTTEDY----RAFYAER-------------- 209 (447)
Q Consensus 177 ~~~~~~~~----~~~---~~~~d~g----------------------~~~p~~~~----~i~~~~~-------------- 209 (447)
++...... .|. +++...| ..+|++.. ..+++++
T Consensus 151 l~~~~~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~ 230 (447)
T TIGR01887 151 FEHEEAPDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFI 230 (447)
T ss_pred HHhcCCCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhh
Confidence 87532110 111 1111110 01243311 1345555
Q ss_pred -----eeE-----EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHH--hchhhhHHHHHh-------cc----cc---C
Q 013216 210 -----CPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVR--RFRASQFDLVKA-------GL----KA---E 262 (447)
Q Consensus 210 -----G~~-----~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~--~~~~~~~~~~~~-------~~----~~---~ 262 (447)
|.. +++|+++|+++|+|.|+.| |||..+++++..+. ......++.+.. +. .. .
T Consensus 231 ~~~~~g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 310 (447)
T TIGR01887 231 AKELEGSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDV 310 (447)
T ss_pred hcCcceEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCC
Confidence 766 8999999999999999999 99999999999886 222111221110 00 00 0
Q ss_pred CCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCC
Q 013216 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFG 342 (447)
Q Consensus 263 ~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (447)
...++++++.|++| .|+.|++.+|+|++|+++.+++.+++.+.+.. ..... +. ...
T Consensus 311 ~~~~t~nvg~I~~g-----------~p~~~~~~~d~R~~p~~~~e~~~~~i~~~~~~---~~~~~---~~-------~~~ 366 (447)
T TIGR01887 311 SGDLTMNVGVIDYE-----------NAEAGLIGLNVRYPVGNDPDTMLKNELAKESG---IVEVT---EN-------GYL 366 (447)
T ss_pred cCCcEEEEEEEEEe-----------CCcEEEEEEEEecCCCCCHHHHHHHHHHHhhC---cEEEE---Ec-------cCC
Confidence 12357888888765 28899999999999999999887877654421 11112 11 123
Q ss_pred CCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCC-CCCCCCCCccccHHHHHHHH
Q 013216 343 RPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANT-PILLHDHNEFLNQAEYLKGI 421 (447)
Q Consensus 343 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~-~~~~H~~~E~v~~~~l~~~~ 421 (447)
.|.+ .+.++|+++.+.+++++..+..+.+...+|++|++++. +++.|||...+ ..++|++||+++++++..++
T Consensus 367 ~p~~--~~~~~~lv~~l~~~~~~~~g~~~~~~~~~ggtda~~~~----~~i~~Gp~~pG~~~~aH~~dE~v~i~~l~~~~ 440 (447)
T TIGR01887 367 KPLY--VPKDDPLVQTLMKVYEKQTGDEGTPVAIGGGTYARLME----NGVAFGALFPGEEDTMHQANEYIMIDDLLLAT 440 (447)
T ss_pred CCeE--ECCCCHHHHHHHHHHHHHhCCCCCeeEecchhhhhhCC----CcEEeCCCCCCCCCCccCCCcceeHHHHHHHH
Confidence 4554 36679999999999999866554556678889988763 46889965221 23689999999999999999
Q ss_pred HHHHHHH
Q 013216 422 DIYESII 428 (447)
Q Consensus 422 ~~~~~~l 428 (447)
++|.+++
T Consensus 441 ~i~~~~~ 447 (447)
T TIGR01887 441 AIYAEAI 447 (447)
T ss_pred HHHHHhC
Confidence 9998864
|
This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific. |
| >TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=373.43 Aligned_cols=363 Identities=19% Similarity=0.236 Sum_probs=267.9
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC--CCCCeEEEeeccccCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDVVPS 104 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~--~~~~~ill~~H~Dtvp~ 104 (447)
.++++++|++|++|||. +++|.++++|+.++|+++|++++..+ ..|+++.++|+. ++.|+|+|.|||||||+
T Consensus 3 ~~~~~~~l~~l~~i~s~--s~~e~~~~~~l~~~l~~~G~~~~~~~----~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~ 76 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRP--SKNEKEVSNFIVNWAKKLGLEVKQDE----VGNVLIRKPATPGYENHPPIVLQGHMDMVCE 76 (477)
T ss_pred HHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHHHHcCCeEEEeC----CCeEEEEEcCCCCCCCCCeEEEEeeccccCC
Confidence 57899999999999986 47899999999999999999987543 349999997642 24588999999999999
Q ss_pred CC----CCCCcCCCceeeCCCCcEEecCcc---cchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHH
Q 013216 105 EP----SKWSHHPFGAHLDSQGNIFARGSQ---DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (447)
Q Consensus 105 ~~----~~W~~~Pf~~~~~~~g~l~GrG~~---D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (447)
++ ..|+.+||++.++ ||++||||++ |||++++++|.+++. .+. ++++|.|+|++|||+|+ .|++.+.
T Consensus 77 ~~~~~~~~w~~~p~~~~~~-~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~~-~~~~i~~~~~~dEE~g~-~Gs~~l~ 150 (477)
T TIGR01893 77 KNEDSLHDFEKDPIELIID-GDWLKARGTTLGADNGIGVAMGLAILED---NNL-KHPPLELLFTVDEETGM-DGALGLD 150 (477)
T ss_pred CCCCCCCCCCCCCeEEEEe-CCEEEECCccccccccHHHHHHHHHHhc---CCC-CCCCEEEEEEeccccCc-hhhhhcC
Confidence 75 4799999999997 9999999996 999999999988764 333 56799999999999885 6999986
Q ss_pred ccccccCCceEEEEecCCc------CcCCc-ce----eEee--eeeeEEEEEEEee-cCCccCC-CCCC--CHHHHHHHH
Q 013216 178 DSHVFNSLNVGIVLDEGLA------STTED-YR----AFYA--ERCPWWLVIKARG-APGHGAK-LYDN--SAMENLFKS 240 (447)
Q Consensus 178 ~~~~~~~~~~~~~~d~g~~------~p~~~-~~----i~~~--~~G~~~~~i~v~G-~~~Hs~~-p~~g--nai~~~~~~ 240 (447)
... +. .++.++.|.... +|+.. .. +.+. ++|..+++|+++| +++|+|. |+.+ ||+..++++
T Consensus 151 ~~~-~~-~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~ 228 (477)
T TIGR01893 151 ENW-LS-GKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARV 228 (477)
T ss_pred hhh-cC-CcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHH
Confidence 542 22 245555552100 12211 01 1111 5799999999999 9999986 7665 999999999
Q ss_pred HHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC
Q 013216 241 IESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA 320 (447)
Q Consensus 241 i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~ 320 (447)
|..+.... .++++.+.+|. +.|+||++|++.+|+|..+....+.+.+.+++.++..
T Consensus 229 i~~l~~~~------------------~~~v~~~~gg~------~~N~ip~~~~~~~diR~~~~~~l~~~~~~~~~~~~~~ 284 (477)
T TIGR01893 229 LNELKENL------------------NFRLSDIKGGS------KRNAIPREAKALIAIDENDVKLLENLVKNFQSKFKSE 284 (477)
T ss_pred HHhhhhcC------------------CeEEEEEeCCC------cccccCCceEEEEEEChhHHHHHHHHHHHHHHHHHHH
Confidence 99886531 34566666665 8888888888888888766666655555554443311
Q ss_pred C----CCceEeecccc----------------------------------------------------------------
Q 013216 321 S----RNMTFELGQFK---------------------------------------------------------------- 332 (447)
Q Consensus 321 ~----~~~~~~~~~~~---------------------------------------------------------------- 332 (447)
. .+++++..++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~t~n~g~i~~~~~~~~~~i~~R~~~~~ 364 (477)
T TIGR01893 285 YSELEPNITIEVSKRENSVKVFSENTTDKLINALNGLPNGVQSVSDEEPGLVESSLNLGVVKTKENKVIFTFLIRSSVES 364 (477)
T ss_pred hcccCCCeEEEEEECCCcccccCHHHHHHHHHHHHHCCccceeeccCCCCeEEeeeeEEEEEEcCCEEEEEEEeCCCCch
Confidence 1 11111100000
Q ss_pred ---------------ccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHc--CCCeEEE
Q 013216 333 ---------------QRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER--GLPAIGF 395 (447)
Q Consensus 333 ---------------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~--g~p~~~~ 395 (447)
....+......|++ .++.++|+++.+.+++++..+..+.+...+|++|+++|.+. ++|++.|
T Consensus 365 ~~~~i~~~i~~~~~~~~~~v~~~~~~~p~-~~~~d~plv~~l~~a~~~~~g~~~~~~~~~Ggtd~~~~~~~~~~i~~v~~ 443 (477)
T TIGR01893 365 DKDYVTEKIESIAKLAGARVEVSAGYPSW-QPDPQSNLLDTARKVYSEMFGEDPEVKVIHAGLECGIISSKIPDIDMISI 443 (477)
T ss_pred hHHHHHHHHHHHhhhcCeEEEEecCCCcc-cCCCCCHHHHHHHHHHHHHHCCCCeEEEeecCccHHHHHhhCCCceEEEe
Confidence 00001111233443 46788999999999999987655455677899999999876 7888999
Q ss_pred ccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013216 396 SPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 431 (447)
Q Consensus 396 gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l 431 (447)
||+.. +.|+|||+++++++.+++++|.+++..+
T Consensus 444 Gp~~~---~~H~~nE~i~i~~l~~~~~~~~~ll~~~ 476 (477)
T TIGR01893 444 GPNIY---DPHSPNERVSISSVEKVWDFLVKVLERL 476 (477)
T ss_pred CCCCC---CCCCCCceeeHHHHHHHHHHHHHHHHhc
Confidence 99764 6999999999999999999999998654
|
|
| >TIGR01882 peptidase-T peptidase T | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=370.45 Aligned_cols=356 Identities=15% Similarity=0.178 Sum_probs=271.3
Q ss_pred hHHHHHHHhhhcccCCCC--------CCChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCCCCC-CCeEEEee
Q 013216 28 DSIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNPQ-LPSILLNS 97 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~--------~~~e~~~~~~i~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~~~~-~~~ill~~ 97 (447)
+++++.+.+|++|+|.|. +..+++++++|.++|+++|++ ++. +. +..||+|.++|+.+. .|+|+|.+
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~-d~--~~gnv~~~~~~~~~~~~~~i~~~a 79 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHY-DE--KNGYVIATIPSNTDKDVPTIGFLA 79 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEE-cC--CceEEEEEecCCCCCCCCEEEEEE
Confidence 688999999999999872 113448999999999999997 553 42 245999999886431 38999999
Q ss_pred ccccCCCCC-C-------------------------CCCcCCCce------e-eCCCCcEEecCcccchhHHHHHHHHHH
Q 013216 98 HTDVVPSEP-S-------------------------KWSHHPFGA------H-LDSQGNIFARGSQDMKCVGMQYLEAIR 144 (447)
Q Consensus 98 H~Dtvp~~~-~-------------------------~W~~~Pf~~------~-~~~~g~l~GrG~~D~k~~~a~~l~a~~ 144 (447)
|||||+... . .|.++||+. . .+ ++.+|| +|||+++|++|.|++
T Consensus 80 HmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~-g~~l~G---~D~KgglAa~l~A~~ 155 (410)
T TIGR01882 80 HVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTD-GTTLLG---ADDKAGIAEIMTAAD 155 (410)
T ss_pred ecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcC-CCEeec---ccCHHHHHHHHHHHH
Confidence 999998522 2 689999994 3 44 679999 999999999999999
Q ss_pred HHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCc
Q 013216 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGH 224 (447)
Q Consensus 145 ~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~H 224 (447)
.|.+.+..++++|.|+|+++||+|. |++.+..+. + ..+++++++. +|++ .+.+..+|..+++|+++|+++|
T Consensus 156 ~L~e~~~~~~g~I~~~ft~dEE~g~--Ga~~l~~~~-~-~~~~~~~i~g---ep~g--~i~~~~~g~~~~~I~v~Gk~aH 226 (410)
T TIGR01882 156 YLINHPEIKHGTIRVAFTPDEEIGR--GAHKFDVKD-F-NADFAYTVDG---GPLG--ELEYETFSAAAAKITIQGNNVH 226 (410)
T ss_pred HHHhCCCCCCCCEEEEEECcccCCc--Ccchhhhhh-c-CccEEEEeCC---CCCC--eEEEccccceEEEEEEEEEecC
Confidence 9988643468899999999999863 888876433 2 3567777773 4655 3566667999999999999999
Q ss_pred cCCC-CCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCC
Q 013216 225 GAKL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPP 302 (447)
Q Consensus 225 s~~p-~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~ 302 (447)
++.+ +.+ ||+..+..++..+...... ..++-+.+.+++| ..|.+|++|++.+|+|+.+
T Consensus 227 a~~~~~~g~nAi~~a~~~~~~l~~~~~~-------------~~t~~~~g~i~~g-------~i~giPd~a~l~~diR~~~ 286 (410)
T TIGR01882 227 PGTAKGKMINAAQIAIDLHNLLPEDDRP-------------EYTEGREGFFHLL-------SIDGTVEEAKLHYIIRDFE 286 (410)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCcCCC-------------ccccceeEEEEEE-------eEEEecCEEEEEEEEecCC
Confidence 9976 456 8988888776655432110 0011112334444 5677999999999999999
Q ss_pred CCCHHHHHHHHHHHhccC--CCC---ceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecC
Q 013216 303 TTDAESLERRIVEEWAPA--SRN---MTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFP 377 (447)
Q Consensus 303 ~~~~~~i~~~i~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (447)
.++.+.+.++|+++++.. ..+ ++++ +. ..+.+.......++++++.+.+++++++..+ ....+.
T Consensus 287 ~e~~e~i~~~i~~i~~~~~~~~g~~~v~~~---~~-------~~~~~~~~~~~~~~~lv~~~~~a~~~~G~~~-~~~~~~ 355 (410)
T TIGR01882 287 KENFQERKELMKRIVEKMNNEYGQDRIKLD---MN-------DQYYNMAEKIEKVMEIVDIAKQAMENLGIEP-KISPIR 355 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceEEEE---EE-------eeecChhhccCCCHHHHHHHHHHHHHhCCCC-cccccc
Confidence 999999999999888632 222 2333 22 1222221245678999999999999877654 444567
Q ss_pred CCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 378 ASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 378 g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
|++|+++|...|+|++.|||+.. +.|++|||++++++.+++++|.+++...++
T Consensus 356 ggtDa~~~~~~Gip~~~~G~G~~---~aHt~dE~v~i~~l~~~~~~~~~li~~~~~ 408 (410)
T TIGR01882 356 GGTDGSQLSYMGLPTPNIFAGGE---NMHGRFEYISVDNMVKAVDVIVEIAKLNEE 408 (410)
T ss_pred eechHHHHHhCCCCCCeEcCCcc---cCcCCceEEEHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999864 599999999999999999999999987653
|
This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides. |
| >PRK15026 aminoacyl-histidine dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=358.20 Aligned_cols=360 Identities=17% Similarity=0.207 Sum_probs=276.4
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC--CCCCeEEEeeccccC
Q 013216 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDVV 102 (447)
Q Consensus 25 ~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~--~~~~~ill~~H~Dtv 102 (447)
....+++++|++|++|||.| ++|.++++++.++++++|++++..+ ..|+++.+++.. .+.|+|+|.||||||
T Consensus 7 ~~~~~~~~~l~~Lv~ips~S--~~e~~~~~~l~~~~~~~G~~~~~d~----~gnvi~~~~~~~g~~~~~~v~l~gH~DtV 80 (485)
T PRK15026 7 LSPQPLWDIFAKICSIPHPS--YHEEQLAEYIVGWAKEKGFHVERDQ----VGNILIRKPATAGMENRKPVVLQAHLDMV 80 (485)
T ss_pred cCHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHhCCCEEEEEe----cCeEEEEEcCCCCCCCCCEEEEEeeeccc
Confidence 35678999999999999974 7888999999999999999987543 238999876431 235889999999999
Q ss_pred CCCC----CCCCcCCCceeeCCCCcEEecCc---ccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHH
Q 013216 103 PSEP----SKWSHHPFGAHLDSQGNIFARGS---QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (447)
Q Consensus 103 p~~~----~~W~~~Pf~~~~~~~g~l~GrG~---~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (447)
|+++ .+|+++||++.++ ||++||||+ +|||++++++|.++ .+.+. .+++|.|+|++|||+|+ .|++.
T Consensus 81 ~~~~~~~~~~w~~~P~~~~i~-~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~-~~~~i~~l~t~dEE~G~-~ga~~ 154 (485)
T PRK15026 81 PQKNNDTVHDFTKDPIQPYID-GEWVKARGTTLGADNGIGMASALAVL---ADENV-VHGPLEVLLTMTEEAGM-DGAFG 154 (485)
T ss_pred CCCCCCccccCCCCCceEEEc-CCEEEeCCccccCccHHHHHHHHHHH---HhCCC-CCCCEEEEEEcccccCc-HhHHH
Confidence 9975 3799999999997 999999999 59999999988775 44454 37899999999999986 79999
Q ss_pred HHccccccCCceEEEEecCCcCcCCcceeEeee------------------eeeEEEEEEEee-cCCccCC-CCCC--CH
Q 013216 176 FADSHVFNSLNVGIVLDEGLASTTEDYRAFYAE------------------RCPWWLVIKARG-APGHGAK-LYDN--SA 233 (447)
Q Consensus 176 ~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~------------------~G~~~~~i~v~G-~~~Hs~~-p~~g--na 233 (447)
+.. ..+ ..++.+++|.. ....++.+. +|..+++|+++| ++||||. |+.| ||
T Consensus 155 l~~-~~~-~~~~~i~~e~~-----~~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nA 227 (485)
T PRK15026 155 LQS-NWL-QADILINTDSE-----EEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNA 227 (485)
T ss_pred hhh-ccC-CcCEEEEeCCC-----CCCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCccH
Confidence 854 333 45888998753 112232222 577889999999 9999995 7776 99
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHH
Q 013216 234 MENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRI 313 (447)
Q Consensus 234 i~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i 313 (447)
+..++++|..+.. .++++++.++||+ +.|+||++|++.+++|.......+.+.+.+
T Consensus 228 i~~la~~l~~~~~------------------~~~~~v~~i~GG~------~~NaIp~~a~a~i~~~~~~~~~~~~~~~~~ 283 (485)
T PRK15026 228 NKLLVRFLAGHAE------------------ELDLRLIDFNGGT------LRNAIPREAFATIAVAADKVDALKSLVNTY 283 (485)
T ss_pred HHHHHHHHHHhHh------------------hCCeEEEEEeCCC------ccCCCCCCcEEEEEEChhHHHHHHHHHHHH
Confidence 9999999887531 1589999999998 999999999999999987655555555544
Q ss_pred HHHhcc----CCCCceEee----------------------------------------------cc-----------cc
Q 013216 314 VEEWAP----ASRNMTFEL----------------------------------------------GQ-----------FK 332 (447)
Q Consensus 314 ~~~~~~----~~~~~~~~~----------------------------------------------~~-----------~~ 332 (447)
++.+.. ...++.++. +. +.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Gv~~~s~~~~g~v~~S~Nlg~v~~~~~~~~i~~~ 363 (485)
T PRK15026 284 QEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCL 363 (485)
T ss_pred HHHHHHHhcccCCCeEEEEEEccccccccCHHHHHHHHHHHHHCCcccEEeccCCCCeEEeeeEEEEEEEeCCEEEEEEE
Confidence 333320 001111100 00 00
Q ss_pred ccc----------------------cccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHc--
Q 013216 333 QRA----------------------SLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER-- 388 (447)
Q Consensus 333 ~~~----------------------~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~-- 388 (447)
.+. .+.....+|++ ..++++|+++.+.++++++.+..+.+...++++|++.|.+.
T Consensus 364 ~Rs~~~~~~~~i~~~i~~~~~~~g~~~~~~~~~p~w-~~~~ds~lv~~l~~~y~e~~G~~~~~~~ihaglEcG~~~~~~p 442 (485)
T PRK15026 364 IRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGW-QPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYP 442 (485)
T ss_pred ecCCCchHHHHHHHHHHHHHHHcCcEEEEeCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEEehHHHHHhhCC
Confidence 000 00123456666 56778999999999999998776566778899999999865
Q ss_pred CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013216 389 GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 431 (447)
Q Consensus 389 g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l 431 (447)
++|++.|||... .+|+|||+++++++...++++..++..+
T Consensus 443 ~i~~VsfGP~~~---~~HspdE~v~I~s~~~~~~~l~~~l~~~ 482 (485)
T PRK15026 443 EMDMVSIGPTIT---GPHSPDEQVHIESVGHYWTLLTELLKEI 482 (485)
T ss_pred CCCEEEECCCCC---CCCCCCcEEEhHHHHHHHHHHHHHHHhh
Confidence 899999999976 4899999999999988888888888776
|
|
| >TIGR01891 amidohydrolases amidohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=353.82 Aligned_cols=346 Identities=18% Similarity=0.213 Sum_probs=269.1
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCCCCCC
Q 013216 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWS 110 (447)
Q Consensus 31 ~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W~ 110 (447)
.+++++|++|||+| ++|.+++++|.++|+++|++++... .+..|+++++++..+ .|+|+|.|||||||+++ |+
T Consensus 2 ~~~~~~L~~ips~s--~~E~~~a~~l~~~l~~~g~~~~~~~--~~~~~vva~~~~~~~-~~~i~l~gH~DtVp~~~--~~ 74 (363)
T TIGR01891 2 TDIRRHLHEHPELS--FEEFKTSSLIAEALESLGIEVRRGV--GGATGVVATIGGGKP-GPVVALRADMDALPIQE--QT 74 (363)
T ss_pred hHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCceEecC--CCCcEEEEEEeCCCC-CCEEEEEeccCCCCccc--cc
Confidence 57899999999986 7899999999999999999987522 245799999876433 48999999999999864 67
Q ss_pred cCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEE
Q 013216 111 HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIV 190 (447)
Q Consensus 111 ~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~ 190 (447)
.+||.+. + ||++||||+ ++++++++.|++.|++.+..++++|.|+|++|||.+ .|++.+++++.+++.|.+++
T Consensus 75 ~~pf~~~-~-~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~~~~~d~~i~ 147 (363)
T TIGR01891 75 DLPYKST-N-PGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGG--GGATKMIEDGVLDDVDAILG 147 (363)
T ss_pred CCCcccC-C-CCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCc--chHHHHHHCCCCCCcCEEEE
Confidence 7999986 5 899999997 478899999999988876667899999999999985 59999998876766788888
Q ss_pred EecCCcCcCCc--ceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcce
Q 013216 191 LDEGLASTTED--YRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVS 267 (447)
Q Consensus 191 ~d~g~~~p~~~--~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t 267 (447)
++.....+.+. .....+++|..+++++++|+++|++.|+.| ||+..+++++.+++.+..... .....++
T Consensus 148 ~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~--------~~~~~~~ 219 (363)
T TIGR01891 148 LHPDPSIPAGTVGLRPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNV--------DPSRPAV 219 (363)
T ss_pred ECCCCCCCCeEEEECCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccC--------CCCCCcE
Confidence 76422222221 112346689999999999999999999988 999999999999976532110 0112358
Q ss_pred eeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC--CCCceEeeccccccccccccCCCCc
Q 013216 268 VNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFELGQFKQRASLHDKFGRPI 345 (447)
Q Consensus 268 ~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 345 (447)
++++.+++|. ..|+||++|++.+|+|+.|.++.+++.++|+++++.. ..+.+++ ++. ...+|.
T Consensus 220 ~~i~~i~gG~------~~nvvP~~~~~~~diR~~~~~~~e~~~~~i~~~~~~~~~~~~~~ve---~~~------~~~~p~ 284 (363)
T TIGR01891 220 VTVGIIEAGG------APNVIPDKASMSGTVRSLDPEVRDQIIDRIERIVEGAAAMYGAKVE---LNY------DRGLPA 284 (363)
T ss_pred EEEEEEEcCC------CCcEECCeeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCeEE---EEE------ecCCCC
Confidence 9999999886 8999999999999999999999999999999888632 2345555 442 123443
Q ss_pred ccccCCCChHHHHHHHHHHHhcCC-C--CCceecCCCcchHHHHHcCCCe-EEEccCCCCC----CCCCCCCccccHHHH
Q 013216 346 LTATDSSNPWWNLLEEAVRKANGK-L--GKPEIFPASTDARYFRERGLPA-IGFSPMANTP----ILLHDHNEFLNQAEY 417 (447)
Q Consensus 346 ~~~~~~~~~~~~~~~~a~~~~~~~-~--~~~~~~~g~~D~~~~~~~g~p~-~~~gp~~~~~----~~~H~~~E~v~~~~l 417 (447)
...++++++.++++++++.+. . ..+..++|++|+++++.. +|+ +.|.|..... ...|++++.++.+-+
T Consensus 285 ---~~~~~~l~~~l~~a~~~~~g~~~~~~~~~~~~gg~Da~~~~~~-~P~~~~f~~~~~~~~~~~~~~h~~~~~~~~~~~ 360 (363)
T TIGR01891 285 ---VTNDPALTQILKEVARHVVGPENVAEDPEVTMGSEDFAYYSQK-VPGAFFFLGIGNEGTGLSHPLHHPRFDIDEEAL 360 (363)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCccceeccCCCCccccCHHHHHHh-CCeeEEEEecCCCCCCCCCCCCCCCCcCChHHh
Confidence 235789999999999996442 1 123356799999999986 786 5677776422 468999988887655
|
This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site. |
| >PRK12893 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=356.16 Aligned_cols=353 Identities=17% Similarity=0.217 Sum_probs=269.7
Q ss_pred CCChhHHHHHHHhhhcccCCCC--------CCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEE
Q 013216 24 AKSDDSIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILL 95 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~--------~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill 95 (447)
+.+.++++++|++|++|||.++ +++|.++++||.++|+++|++++.. +..|++++++|.++..|+|+|
T Consensus 6 ~~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~----~~~n~~a~~~g~~~~~~~l~l 81 (412)
T PRK12893 6 RINGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD----AIGNLFGRRAGTDPDAPPVLI 81 (412)
T ss_pred ccCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEeCCCCCCCCEEEE
Confidence 3457899999999999998643 3348899999999999999998752 345999999876543589999
Q ss_pred eeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccC----ccc
Q 013216 96 NSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHD 171 (447)
Q Consensus 96 ~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~ 171 (447)
.||+||||++ |. .|+|++++++|.|++.|.+.+..++++|.|+|++|||+| ++.
T Consensus 82 ~~H~DtVp~~----------------g~------~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~ 139 (412)
T PRK12893 82 GSHLDTQPTG----------------GR------FDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAML 139 (412)
T ss_pred EecccCCCCC----------------Cc------ccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccc
Confidence 9999999964 22 355789999999999999988888999999999999986 236
Q ss_pred CHHHHHcccccc------C-------------------------CceEEEEe--cCCc-Cc-CCcceeEeeeeeeEEEEE
Q 013216 172 GAEKFADSHVFN------S-------------------------LNVGIVLD--EGLA-ST-TEDYRAFYAERCPWWLVI 216 (447)
Q Consensus 172 G~~~~~~~~~~~------~-------------------------~~~~~~~d--~g~~-~p-~~~~~i~~~~~G~~~~~i 216 (447)
|++.+......+ . .+.++-++ .|.. ++ .....++.++||..+++|
T Consensus 140 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~kG~~~~~i 219 (412)
T PRK12893 140 GSGVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEGLPIGVVTGIQGIRWLEV 219 (412)
T ss_pred cHHHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCCCcEEEEeeecccEEEEE
Confidence 888776542100 0 01111111 1100 01 113568899999999999
Q ss_pred EEeecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecC-CCCCCCccccccCCce
Q 013216 217 KARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEA 292 (447)
Q Consensus 217 ~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g-~~~~~~~~~n~iP~~~ 292 (447)
+++|+++|+|. |+ .| |||..+++++..|+.+.... ...++++++.+++| . ..|+||++|
T Consensus 220 ~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~~-----------~~~~~~~vg~i~ggg~------~~NvVP~~a 282 (412)
T PRK12893 220 TVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAAL-----------APDGVATVGRLRVEPN------SRNVIPGKV 282 (412)
T ss_pred EEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHhc-----------CCCceEEEEEEEeeCC------CceEECCee
Confidence 99999999886 74 67 99999999999997753211 11357888888864 4 899999999
Q ss_pred EEEEeeecCCCCCHHHHHHHHHHHhccC--CCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCC
Q 013216 293 EAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKL 370 (447)
Q Consensus 293 ~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ 370 (447)
++.+|+|+.|.++.+++.++|+++++.. .++++++ +.. ....|+ ...++++++.++++.++++...
T Consensus 283 ~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~v~---~~~------~~~~~~---~~~d~~l~~~l~~~~~~~g~~~ 350 (412)
T PRK12893 283 VFTVDIRHPDDARLDAMEAALRAACAKIAAARGVQVT---VET------VWDFPP---VPFDPALVALVEAAAEALGLSH 350 (412)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEE---EEE------EecCCC---cCCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999888632 2445555 331 122332 3446889999999998876543
Q ss_pred CCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhh
Q 013216 371 GKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 371 ~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
.+....|++|+++|.+.+++++.|||+... ..|++||+++++++.+++++|..++..+++.
T Consensus 351 -~~~~~~g~tD~~~~~~~~p~~v~~gp~~~~--~~Hs~dE~v~i~~l~~~~~i~~~ll~~~~~~ 411 (412)
T PRK12893 351 -MRMVSGAGHDAMFLARVAPAAMIFVPCRGG--ISHNEAEDTEPADLAAGANVLLHAVLELAGR 411 (412)
T ss_pred -cccCCccHHHHHHHHhhCCEEEEEeecCCC--CCCCccccCCHHHHHHHHHHHHHHHHHhhcc
Confidence 444567889999999875457899998653 6899999999999999999999999988653
|
|
| >PRK12892 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=355.40 Aligned_cols=349 Identities=17% Similarity=0.160 Sum_probs=268.4
Q ss_pred CCChhHHHHHHHhhhcccC-------CCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEe
Q 013216 24 AKSDDSIIERFRAYLQIDT-------SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips-------~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~ 96 (447)
..+.+++++++++|++|+| .|.+++|.++++||.++|+++|++++.. +++|++++++|.+++ |+|+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~----~~~nl~a~~~g~~~~-~~l~l~ 80 (412)
T PRK12892 6 RIDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID----GIGNVFGRLPGPGPG-PALLVG 80 (412)
T ss_pred cccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEecCCCCC-CeEEEE
Confidence 3456789999999999988 3345678899999999999999998752 456999999886554 889999
Q ss_pred eccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccC----cccC
Q 013216 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDG 172 (447)
Q Consensus 97 ~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G 172 (447)
||+||||++ |++|| |++++++|.|++.|.+.+..++++|.|++++|||.+ +..|
T Consensus 81 gH~DtVp~~----------------g~~dg------~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G 138 (412)
T PRK12892 81 SHLDSQNLG----------------GRYDG------ALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLG 138 (412)
T ss_pred ccccCCCCC----------------Ccccc------hHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCcccc
Confidence 999999974 34444 459999999999999999889999999999999984 4569
Q ss_pred HHHHHccccc----------cC-------------CceEEE-------------EecCCc-CcCC-cceeEeeeeeeEEE
Q 013216 173 AEKFADSHVF----------NS-------------LNVGIV-------------LDEGLA-STTE-DYRAFYAERCPWWL 214 (447)
Q Consensus 173 ~~~~~~~~~~----------~~-------------~~~~~~-------------~d~g~~-~p~~-~~~i~~~~~G~~~~ 214 (447)
++.++++... .. .|..++ .+.|.. +|++ ...++.++||..++
T Consensus 139 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~ 218 (412)
T PRK12892 139 SRAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADRARPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQY 218 (412)
T ss_pred HHHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhcccccccCccEEEEEEeccCHhHhhCCCcEEEEEEeccceEE
Confidence 9988753110 00 011111 111110 1212 14689999999999
Q ss_pred EEEEeecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecC-CCCCCCccccccCC
Q 013216 215 VIKARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPS 290 (447)
Q Consensus 215 ~i~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g-~~~~~~~~~n~iP~ 290 (447)
+|+++|+++|++. |+ .+ ||+..+++++..|+.+.... . ..++++++.+++| . ..|+||+
T Consensus 219 ~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~~----------~-~~~~~~vg~i~gg~~------~~NvIP~ 281 (412)
T PRK12892 219 RITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPRV----------C-GPAVVTVGRVALDPG------SPSIIPG 281 (412)
T ss_pred EEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc----------C-CCcEEEEEEEEecCC------CCeEECC
Confidence 9999999999876 54 56 99999999999997642210 1 1258899999975 4 8999999
Q ss_pred ceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcC
Q 013216 291 EAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANG 368 (447)
Q Consensus 291 ~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~ 368 (447)
+|++.+|+|+.|.++.+++.++|+++++. ..++++++ +.. ...+|+ ...++++++.+++++++.+.
T Consensus 282 ~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~e---~~~------~~~~~~---~~~d~~lv~~~~~a~~~~g~ 349 (412)
T PRK12892 282 RVEFSFDARHPSPPVLQRLVALLEALCREIARRRGCRVS---VDR------IAEYAP---APCDAALVDALRAAAEAAGG 349 (412)
T ss_pred eEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEE---EEE------EecCCC---cCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999988873 22445555 431 122333 34568999999999999554
Q ss_pred CCCCceecCCCcchHHHHHcCCC-eEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013216 369 KLGKPEIFPASTDARYFRERGLP-AIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 369 ~~~~~~~~~g~~D~~~~~~~g~p-~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~ 432 (447)
.. .+...+|++|+++|++. +| ++.|||+... ..|++||+++++++.+++++|..++..++
T Consensus 350 ~~-~~~~~~g~tDa~~~~~~-ip~~~~~gp~~~~--~~H~~~E~v~i~~l~~~~~il~~~l~~~~ 410 (412)
T PRK12892 350 PY-LEMPSGAGHDAQNMARI-APSAMLFVPSKGG--ISHNPAEDTSPADLAQGARVLADTLRRLA 410 (412)
T ss_pred Cc-cccCcchHHHHHHHHhH-CCEEEEEeccCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 43 44556789999999887 77 4679998653 68999999999999999999999998775
|
|
| >PRK09290 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=351.54 Aligned_cols=348 Identities=20% Similarity=0.241 Sum_probs=266.7
Q ss_pred ChhHHHHHHHhhhcc-cCC-------CCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEee
Q 013216 26 SDDSIIERFRAYLQI-DTS-------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (447)
Q Consensus 26 ~~~~~~~~l~~l~~i-ps~-------s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~ 97 (447)
+.+++++.+++|++| +.. |.+++|.++++||.++|+++|++++.. +++||+++++|..+..|+|+|.|
T Consensus 5 ~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~----~~~nl~a~~~g~~~~~~~l~l~g 80 (413)
T PRK09290 5 DAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD----AVGNLFGRLEGRDPDAPAVLTGS 80 (413)
T ss_pred CHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEecCCCCCCCEEEEec
Confidence 468899999999999 422 235678999999999999999998752 45699999976543358899999
Q ss_pred ccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccC----cccCH
Q 013216 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGA 173 (447)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~ 173 (447)
||||||++ |..|+|+++|+++.|++.|.+.+..++++|.|++++|||.| +..|+
T Consensus 81 H~DtVp~~----------------------g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~ 138 (413)
T PRK09290 81 HLDTVPNG----------------------GRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGS 138 (413)
T ss_pred CccCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccH
Confidence 99999974 12477999999999999999988888899999999999984 34688
Q ss_pred HHHHcccc-----------------------ccCCceEEEE---------------ecC-CcCcCC-cceeEeeeeeeEE
Q 013216 174 EKFADSHV-----------------------FNSLNVGIVL---------------DEG-LASTTE-DYRAFYAERCPWW 213 (447)
Q Consensus 174 ~~~~~~~~-----------------------~~~~~~~~~~---------------d~g-~~~p~~-~~~i~~~~~G~~~ 213 (447)
+.+++... + +.|++++. +.| ..+|+. ...++.++||..+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~ 217 (413)
T PRK09290 139 RVFTGALTPEDALALRDADGVSFAEALAAIGY-DGDEAVGAARARRDIKAFVELHIEQGPVLEAEGLPIGVVTGIVGQRR 217 (413)
T ss_pred HHHHcccCHHHHHhccCCCCCCHHHHHHHcCC-ChhhccccccCCCCccEEEEEEeccCHHHHHCCCcEEEEeeeeccEE
Confidence 87764311 1 11322211 000 012332 2468899999999
Q ss_pred EEEEEeecCCccC-CC-CCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecC-CCCCCCccccccC
Q 013216 214 LVIKARGAPGHGA-KL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQP 289 (447)
Q Consensus 214 ~~i~v~G~~~Hs~-~p-~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g-~~~~~~~~~n~iP 289 (447)
++|+++|+++|++ .| +.| |||..+++++..|+.+.... ....+++++.+++| . +.|+||
T Consensus 218 ~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~-----------~~~~~~~~g~i~~g~~------~~NvIP 280 (413)
T PRK09290 218 YRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH-----------GPDLVATVGRLEVKPN------SVNVIP 280 (413)
T ss_pred EEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc-----------CCCeEEEEEEEEEcCC------CCeEEC
Confidence 9999999999988 58 467 99999999999997653210 11247888888864 3 889999
Q ss_pred CceEEEEeeecCCCCCHHHHHHHHHHHhccC--CCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhc
Q 013216 290 SEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKAN 367 (447)
Q Consensus 290 ~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~ 367 (447)
++|++.+|+|+.|.++.+++.++|+++++.. ..+++++ +.. ...+|+ ...++++++.+.+++++.+
T Consensus 281 ~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~~~~~~e---~~~------~~~~~~---~~~d~~lv~~l~~a~~~~g 348 (413)
T PRK09290 281 GEVTFTLDIRHPDDAVLDALVAELRAAAEAIAARRGVEVE---IEL------ISRRPP---VPFDPGLVAALEEAAERLG 348 (413)
T ss_pred CEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEE---EEE------EecCCC---ccCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999888732 2345555 331 123333 3457899999999998875
Q ss_pred CCCCCceecCCCcchHHHHHcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 368 GKLGKPEIFPASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 368 ~~~~~~~~~~g~~D~~~~~~~g~p~-~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
... .+....|++|+++|.. ++|+ +.|||+... ..|++||+++++++.+++++|+.++..+++
T Consensus 349 ~~~-~~~~~~g~tDa~~~~~-~iP~~~~~gp~~~~--~~H~~dE~v~i~~l~~~~~v~~~~l~~l~~ 411 (413)
T PRK09290 349 LSY-RRLPSGAGHDAQILAA-VVPTAMIFVPSVGG--ISHNPAEFTSPEDCAAGANVLLHALLELAE 411 (413)
T ss_pred CCc-cccCCccchHHHHHhc-cCCEEEEEeccCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 433 4445678999999964 6997 678887653 589999999999999999999999998864
|
|
| >KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=320.46 Aligned_cols=397 Identities=20% Similarity=0.345 Sum_probs=306.5
Q ss_pred HHhhhcCCCCChhHHHHHHHhhhcccCCCCCC----ChhHHHHHHHHHHHHCCCceEEEeecC----------CCCeEEE
Q 013216 16 QLIIFSSPAKSDDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAK----------NKPLILL 81 (447)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~l~~ips~s~~~----~e~~~~~~i~~~l~~~G~~~~~~~~~~----------~~~nl~~ 81 (447)
++-.|++.+.+.+++++.|+++++|+|+|..+ ...++++|++++|.++|-.++..+... ..|-|++
T Consensus 4 l~~~fq~id~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~ 83 (473)
T KOG2276|consen 4 LTKVFQSIDLNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLG 83 (473)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhh
Confidence 34567788999999999999999999998544 356889999999999998777666431 1223344
Q ss_pred EecCCCCCCCeEEEeeccccCCCC-CCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEE
Q 013216 82 KWPGSNPQLPSILLNSHTDVVPSE-PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLS 160 (447)
Q Consensus 82 ~~~g~~~~~~~ill~~H~Dtvp~~-~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~ 160 (447)
++ |++|++++++++||||++|.. +++|..+||+.+++ ||+|||||++|+||++++.+.|++++.+.|+.++.||+|+
T Consensus 84 ~~-Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~-~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~ 161 (473)
T KOG2276|consen 84 VL-GSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTED-DGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFV 161 (473)
T ss_pred cc-cCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEE-CCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEE
Confidence 43 888999999999999999998 59999999999998 9999999999999999999999999999999999999999
Q ss_pred eecCcccCcccCHHHHHccc---cccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEee--cCCccCCCCCC---C
Q 013216 161 FVPDEEIGGHDGAEKFADSH---VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAKLYDN---S 232 (447)
Q Consensus 161 ~~~~EE~g~~~G~~~~~~~~---~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G--~~~Hs~~p~~g---n 232 (447)
|.+-||.|+ .|...++++. .+.++|+.++.|. .+--+..+.+.+|.||...+.++|.| +..|||. +.| .
T Consensus 162 ~EgmEEsgS-~~L~~l~~~~kD~~~~~vD~vciSdn-yWlg~kkPcltyGlRG~~yf~i~v~g~~~DlHSGv-fGG~~hE 238 (473)
T KOG2276|consen 162 FEGMEESGS-EGLDELIEKEKDKFFKDVDFVCISDN-YWLGTKKPCLTYGLRGVIYFQIEVEGPSKDLHSGV-FGGVVHE 238 (473)
T ss_pred EEechhccC-ccHHHHHHHHhhhhhccCCEEEeeCc-eeccCCCcccccccccceeEEEEEeeccccccccc-ccchhHH
Confidence 999999998 6888888753 3557887777663 33234557788999999999999999 6789986 334 7
Q ss_pred HHHHHHHHHHHHHhchhh----------------h---HHHHH-------h--c------------cccCCCcceeeeee
Q 013216 233 AMENLFKSIESVRRFRAS----------------Q---FDLVK-------A--G------------LKAEGEVVSVNMAF 272 (447)
Q Consensus 233 ai~~~~~~i~~l~~~~~~----------------~---~~~~~-------~--~------------~~~~~~~~t~~~~~ 272 (447)
|+..|..++..|...+.+ + ++.+. + + +......++..+..
T Consensus 239 ~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~~~k~~~l~~rWryPSLsihg 318 (473)
T KOG2276|consen 239 AMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPTDDKKRILMHRWRYPSLSIHG 318 (473)
T ss_pred HHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccccccCchHHHhhhhcccCccceec
Confidence 888888888887653321 0 00000 0 0 00112356777888
Q ss_pred eecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc-----C-CCCceEeeccccccccccccCCCCcc
Q 013216 273 LKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-----A-SRNMTFELGQFKQRASLHDKFGRPIL 346 (447)
Q Consensus 273 i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~p~~ 346 (447)
|+|.- ++.++..+||.++.-.|++|++|.++.+.+.+.+.++++. . ...++++ +. ..+.|..
T Consensus 319 IeGaF--s~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~nS~N~l~~~---~~-------~~~~~Wv 386 (473)
T KOG2276|consen 319 IEGAF--SGPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNSPNKLKVS---MG-------HAGAPWV 386 (473)
T ss_pred cccee--eCCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEe---ec-------CCCCcee
Confidence 77543 4445889999999999999999999999998888776652 1 1234444 32 3445543
Q ss_pred cccCCCChHHHHHHHHHHHhcCCCCCceecCCCc--chHHHHHc-CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013216 347 TATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST--DARYFRER-GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 423 (447)
Q Consensus 347 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~--D~~~~~~~-g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~ 423 (447)
.+++++-+.++++|++.+++.. ......|+| -..-|+.. +.+++.+ |.+..+.+.|+.||++++..+.++.++
T Consensus 387 --~d~~~~~y~a~krA~~~v~gve-Pd~~ReGgSIPvt~tfQ~~~~~~V~ll-P~G~~dD~aHsqNEkl~i~N~~~G~k~ 462 (473)
T KOG2276|consen 387 --SDPDDPHYLALKRAIETVYGVE-PDFTREGGSIPVTLTFQDITGKSVLLL-PYGASDDGAHSQNEKLNITNYVEGTKV 462 (473)
T ss_pred --cCCCchhHHHHHHHHHHhhCCC-CCccccCCccceehHHHHHhCCCeEEe-cccccccchhhhcccccHHHHhhhHHH
Confidence 6778999999999999998765 223334555 45667776 7777766 444334589999999999999999999
Q ss_pred HHHHHHHHHh
Q 013216 424 YESIIKAYAS 433 (447)
Q Consensus 424 ~~~~l~~l~~ 433 (447)
++.++.++++
T Consensus 463 l~ay~~el~~ 472 (473)
T KOG2276|consen 463 LAAYISELAQ 472 (473)
T ss_pred HHHHHHHHhc
Confidence 9999998864
|
|
| >PRK12891 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=347.75 Aligned_cols=350 Identities=17% Similarity=0.205 Sum_probs=266.7
Q ss_pred hhHHHHHHHhhhcccC-C-------CCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeec
Q 013216 27 DDSIIERFRAYLQIDT-S-------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips-~-------s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H 98 (447)
..++++.+..|-+|.+ . +.+++|.++++||.++|+++|++++.. ...||++.++|.+++.|+|+|.||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~----~~gNl~a~~~g~~~~~~~l~~~~H 84 (414)
T PRK12891 9 GERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVD----AMGNLFARRAGRDPDAAPVMTGSH 84 (414)
T ss_pred HHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEC----CCCCEEEEecCCCCCCCeEEEEec
Confidence 4589999999999842 1 235678999999999999999998864 345999999886555689999999
Q ss_pred cccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCc----ccCHH
Q 013216 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----HDGAE 174 (447)
Q Consensus 99 ~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----~~G~~ 174 (447)
|||||++ |..|||++++++|.|++.|++.+..++++|.|++++|||.++ +.|++
T Consensus 85 ~DtVp~g----------------------g~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~ 142 (414)
T PRK12891 85 ADSQPTG----------------------GRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSG 142 (414)
T ss_pred ccCCCCC----------------------ccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHH
Confidence 9999974 235999999999999999999999999999999999999852 24665
Q ss_pred HHH------------------------cccccc-------CCceEE--EEecCCc-CcCC-cceeEeeeeeeEEEEEEEe
Q 013216 175 KFA------------------------DSHVFN-------SLNVGI--VLDEGLA-STTE-DYRAFYAERCPWWLVIKAR 219 (447)
Q Consensus 175 ~~~------------------------~~~~~~-------~~~~~~--~~d~g~~-~p~~-~~~i~~~~~G~~~~~i~v~ 219 (447)
.+. +.+... ..+..+ ..+.|.. ++++ ...++.+++|..+++|+++
T Consensus 143 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~ 222 (414)
T PRK12891 143 VFFGVYPLEYLLSRRDDTGRTLGEHLARIGYAGAEPVGGYPVHAAYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLT 222 (414)
T ss_pred HHhCCCCHHHHHhccCCCCCCHHHHHHHCCCCcccccccCCCCEEEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEE
Confidence 442 211100 001112 2221211 1111 3578999999999999999
Q ss_pred ecCCccC-CCC-CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEE
Q 013216 220 GAPGHGA-KLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGF 296 (447)
Q Consensus 220 G~~~Hs~-~p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~ 296 (447)
|+++|+| .|+ .+ |||..++++|..|+.+... .....+++++.|++|. .+.|+||++|++.+
T Consensus 223 Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~-----------~~~~~t~~vg~I~gG~-----~~~NvVP~~~~~~~ 286 (414)
T PRK12891 223 GVDAHAGTTPMAFRRDALVGAARMIAFLDALGRR-----------DAPDARATVGMIDARP-----NSRNTVPGECFFTV 286 (414)
T ss_pred eECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCeEEEEEEEEeeC-----CCcceECCeEEEEE
Confidence 9999988 476 46 9999999999999775321 0123589999999862 17899999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCce
Q 013216 297 DIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPE 374 (447)
Q Consensus 297 d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 374 (447)
|+|+.|.++.+.+.++|+++++. ..++++++ +.. ....|+ ...++++++.++++++..+... ...
T Consensus 287 diR~~~~e~~e~v~~~i~~~~~~~~~~~~~~~~---~~~------~~~~~~---~~~d~~lv~~l~~a~~~~G~~~-~~~ 353 (414)
T PRK12891 287 EFRHPDDAVLDRLDAALRAELARIADETGLRAD---IEQ------IFGYAP---APFAPGCIDAVRDAARALGLSH-MDI 353 (414)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHHHHhCCEEE---EEE------EecCCC---cCCCHHHHHHHHHHHHHcCCCc-eec
Confidence 99999999999999999988863 23455555 431 123333 3457899999999988766543 344
Q ss_pred ecCCCcchHHHHHcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhh
Q 013216 375 IFPASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 375 ~~~g~~D~~~~~~~g~p~-~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
.+.|++|+.++.. ++|+ +.|||+... ..|++||+++++++..++++|..++..++.-
T Consensus 354 ~~~ggtDa~~~~~-giPt~~~~gp~~~~--~aH~~dE~v~i~~l~~~~~il~~~l~~~~~~ 411 (414)
T PRK12891 354 VSGAGHDACFAAR-GAPTGMIFVPCVDG--LSHNEAEAITPEWFAAGADVLLRAVLQSAQE 411 (414)
T ss_pred CCcchHHHHHHHh-hCCEEEEEEcCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHhhh
Confidence 5678999888754 7997 689998764 6899999999999999999999999988653
|
|
| >PRK12890 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=346.27 Aligned_cols=350 Identities=17% Similarity=0.194 Sum_probs=266.5
Q ss_pred ChhHHHHHHHhhhcccCC-------CCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeec
Q 013216 26 SDDSIIERFRAYLQIDTS-------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~-------s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H 98 (447)
+.+++++.+.+|.+||.. |.+++|.++++||.++|+++|++++.. .+.|++++++|..+..|+|+|.||
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~----~~~nlia~~~g~~~~~~~l~~~~H 82 (414)
T PRK12890 7 NGERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD----AAGNLFGRLPGRDPDLPPLMTGSH 82 (414)
T ss_pred CHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc----CCCcEEEEeCCCCCCCCEEEEeCc
Confidence 457899999999998822 224679999999999999999998854 345999999876444589999999
Q ss_pred cccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCc----ccCHH
Q 013216 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----HDGAE 174 (447)
Q Consensus 99 ~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----~~G~~ 174 (447)
|||||++ |..|||++++++|.|++.|.+.+..++++|.|++++|||.|+ +.|++
T Consensus 83 ~DtVp~~----------------------g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~ 140 (414)
T PRK12890 83 LDTVPNG----------------------GRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSR 140 (414)
T ss_pred ccCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHH
Confidence 9999974 346899999999999999999888889999999999999742 35776
Q ss_pred HHHcccc----c----------------c--CCceEEE---------------EecCCc-C-cCCcceeEeeeeeeEEEE
Q 013216 175 KFADSHV----F----------------N--SLNVGIV---------------LDEGLA-S-TTEDYRAFYAERCPWWLV 215 (447)
Q Consensus 175 ~~~~~~~----~----------------~--~~~~~~~---------------~d~g~~-~-p~~~~~i~~~~~G~~~~~ 215 (447)
.+.+... + . ..|...+ .+.|.. . ......++.++||..+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~ 220 (414)
T PRK12890 141 ALAGTLDVEAVLATRDDDGTTLAEALRRIGGDPDALPGALRPPGAVAAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQA 220 (414)
T ss_pred HHHcccChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEE
Confidence 6544211 0 0 0111111 011100 0 011256889999999999
Q ss_pred EEEeecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecC-CCCCCCccccccCCc
Q 013216 216 IKARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSE 291 (447)
Q Consensus 216 i~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g-~~~~~~~~~n~iP~~ 291 (447)
|+++|+++|+|. |+ .+ |||..+++++.+|+.+.... ...++++++.+++| . +.|+||++
T Consensus 221 i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~~-----------~~~~~~~~g~i~~gg~------~~NvIP~~ 283 (414)
T PRK12890 221 VTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARAL-----------LHDLVATVGRLDVEPN------AINVVPGR 283 (414)
T ss_pred EEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHhc-----------CCCeEEEEEEEEECCC------CceEECCe
Confidence 999999999986 75 55 99999999999998753211 02357888988864 4 89999999
Q ss_pred eEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCC
Q 013216 292 AEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGK 369 (447)
Q Consensus 292 ~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~ 369 (447)
|++.+|+|+.|.++.+++.++|+++++. ...+++++ +.. ....|. ...++++++.+.+++++.+..
T Consensus 284 a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~~---~~~------~~~~~~---~~~~~~l~~~l~~~~~~~g~~ 351 (414)
T PRK12890 284 VVFTLDLRSPDDAVLEAAEAALLAELEAIAAARGVRIE---LER------LSRSEP---VPCDPALVDAVEAAAARLGYP 351 (414)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEE---EEE------eecCCC---cCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999887763 22345555 431 122333 345689999999999887544
Q ss_pred CCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 370 LGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 370 ~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
. ....+.|++|+++|...+++++.|||+... ..|++||+++++++.+++++|..++..+++
T Consensus 352 ~-~~~~~~g~tDa~~~~~~gp~~~~~gp~~~~--~aHs~dE~v~i~~l~~~~~i~~~ll~~l~~ 412 (414)
T PRK12890 352 S-RRMPSGAGHDAAAIARIGPSAMIFVPCRGG--ISHNPEEAMDPEDLAAGARVLLDAVLRLDR 412 (414)
T ss_pred c-eecCCcccHHHHHHHhhCCEEEEEecCCCC--CCCCcCccCCHHHHHHHHHHHHHHHHHHhh
Confidence 3 344567899999999988667789998653 689999999999999999999999998854
|
|
| >COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=331.18 Aligned_cols=368 Identities=21% Similarity=0.231 Sum_probs=296.1
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCC
Q 013216 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (447)
Q Consensus 25 ~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~ 104 (447)
...++++++.++|+++|+++ .+|.+++++|.++|+++|+++. +...+...+++.++|..++ |+|.|+++||.+|.
T Consensus 9 ~~~~~l~~~rr~lH~~PEL~--f~E~~Ta~~i~~~L~~~g~~~~--~~~~~~TGvva~~~~g~~g-~tIalRAD~DALPi 83 (392)
T COG1473 9 ELKDELIEWRRDLHEHPELG--FEEYRTAAYIAEKLEELGFEVV--EVGGGKTGVVATLKGGKPG-PTIALRADMDALPI 83 (392)
T ss_pred hhhHHHHHHHHHHhhCCccc--hhHHHHHHHHHHHHHHcCCeeE--eccCCceEEEEEEcCCCCC-CEEEEEeecccCcc
Confidence 56789999999999999995 8999999999999999999933 3222356899999876553 69999999999999
Q ss_pred CCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccC
Q 013216 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (447)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (447)
.++ +.-||.+.. +|++|+||+. ++.+++|.+++.|.+...+++++|+|+|+|+||+++ |++.|++++.+++
T Consensus 84 ~E~--t~~~~~S~~--~G~mHACGHD---~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~--Ga~~mi~~G~~~~ 154 (392)
T COG1473 84 QEE--TGLPFASKN--PGVMHACGHD---GHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG--GAKAMIEDGVFDD 154 (392)
T ss_pred ccc--cCCCcccCC--CCCcccCCch---HHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccc--cHHHHHhcCCccc
Confidence 752 347898865 6899999976 899999999999998866799999999999999875 8999999999988
Q ss_pred -CceEEEEecCCcCcCCcceeEee--eeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccc
Q 013216 185 -LNVGIVLDEGLASTTEDYRAFYA--ERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (447)
Q Consensus 185 -~~~~~~~d~g~~~p~~~~~i~~~--~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 260 (447)
+|.++-++.....|.+...+..| .-+...++++++|+++|++.|+.+ ||+.+++.++..|+.+..+..++
T Consensus 155 ~vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p------ 228 (392)
T COG1473 155 FVDAVFGLHPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDP------ 228 (392)
T ss_pred cccEEEEecCCCCCCCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCC------
Confidence 89888887533224455555555 356788999999999999999999 99999999999999875533221
Q ss_pred cCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeecccccccccc
Q 013216 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLH 338 (447)
Q Consensus 261 ~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~ 338 (447)
.....++++.+++|. +.|+||+.+++.+++|+.+....+.+.++|+++++. ..++++++ +.
T Consensus 229 --~~~~vv~vg~~~aG~------a~NVIpd~A~l~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~g~~~e---i~------ 291 (392)
T COG1473 229 --LDSAVVTVGKIEAGT------AANVIPDSAELEGTIRTFSDEVREKLEARIERIAKGIAAAYGAEAE---ID------ 291 (392)
T ss_pred --ccCeEEEEEEecCCC------cCCcCCCeeEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhCCeEE---EE------
Confidence 112478889999887 889999999999999999999999999999998873 45677776 44
Q ss_pred ccCCCCcccccCCCChHHHHHHHHHHHhcCCC---CCc-eecCCCcchHHHHHcCCCeEEEccCCCC-C---CCCCCCCc
Q 013216 339 DKFGRPILTATDSSNPWWNLLEEAVRKANGKL---GKP-EIFPASTDARYFRERGLPAIGFSPMANT-P---ILLHDHNE 410 (447)
Q Consensus 339 ~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~-~~~~g~~D~~~~~~~g~p~~~~gp~~~~-~---~~~H~~~E 410 (447)
+...++++.+|..+++.+++++++..++. ... ..+.|++|+++|... +|...|-.|... . ...|+|..
T Consensus 292 ---~~~~~p~~~Nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsEDf~~~~~~-~Pg~~~~lG~~~~~~~~~~~H~p~~ 367 (392)
T COG1473 292 ---YERGYPPVVNDPALTDLLAEAAEEVGGEEVVVVELPPSMAGSEDFGYYLEK-VPGAFFFLGTGSADGGTYPLHHPKF 367 (392)
T ss_pred ---ecCCCCCccCCHHHHHHHHHHHHHhccccceecccCCCCCccchHHHHHHh-CCeeEEEeecCcCCCCcccccCCcC
Confidence 22223456788999999999999987532 122 234599999999988 675433333222 1 23899999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHh
Q 013216 411 FLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 411 ~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
.++.+.+..+++++..+...+..
T Consensus 368 ~~de~~l~~g~~~~~~~~~~~~~ 390 (392)
T COG1473 368 DFDEAALATGVKLLAALALLYLA 390 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999887754
|
|
| >TIGR01879 hydantase amidase, hydantoinase/carbamoylase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=338.90 Aligned_cols=346 Identities=15% Similarity=0.171 Sum_probs=261.2
Q ss_pred HHHHHHHhhhcccCC--------CCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccc
Q 013216 29 SIIERFRAYLQIDTS--------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTD 100 (447)
Q Consensus 29 ~~~~~l~~l~~ips~--------s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~D 100 (447)
++++.+..+-+|.+. +.+++|.++++||.++|+++|++++.. ...||+++++|+.++.|.|+|.||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~~----~~~nl~a~~~g~~~~~~~l~~~~H~D 77 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRFD----EVGNLIGRKEGTEPPLEVVLSGSHID 77 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEEe----cCCcEEEEecCCCCCCCEEEEecccc
Confidence 456666777666321 235679999999999999999998753 34599999988765458999999999
Q ss_pred cCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccC----cccCHHHH
Q 013216 101 VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGAEKF 176 (447)
Q Consensus 101 tvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~~~~ 176 (447)
|||.+ |+++ .+.+++++|.+++.|++.+.+++++|.|+++++||.+ ++.|++.+
T Consensus 78 tV~~g----------------g~~d------g~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~ 135 (401)
T TIGR01879 78 TVVNG----------------GNFD------GQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNM 135 (401)
T ss_pred cCCCC----------------CccC------CHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHH
Confidence 99974 3333 3458999999999999999989999999999999973 34788888
Q ss_pred Hcccccc--------------------CCceEE---------------EEecCCc-C-cCCcceeEeeeeeeEEEEEEEe
Q 013216 177 ADSHVFN--------------------SLNVGI---------------VLDEGLA-S-TTEDYRAFYAERCPWWLVIKAR 219 (447)
Q Consensus 177 ~~~~~~~--------------------~~~~~~---------------~~d~g~~-~-p~~~~~i~~~~~G~~~~~i~v~ 219 (447)
+...... +.+..+ .++.|.. + .+....++.+++|..+++|+++
T Consensus 136 ~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~ 215 (401)
T TIGR01879 136 VGLANPEDVRNICDAKGISFAEAMKACGPDLPNQPLRPRGDIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLN 215 (401)
T ss_pred hcccchhHHHhCcCCCCCCHHHHHHHcCCCcccccccccccccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEE
Confidence 6422000 001111 1111111 0 1112578999999999999999
Q ss_pred ecCCccCCCC--CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEE
Q 013216 220 GAPGHGAKLY--DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGF 296 (447)
Q Consensus 220 G~~~Hs~~p~--~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~ 296 (447)
|+++|++.++ .+ ||+..+++++..|+.+.... ....+.+++.+++|. ...|+||++|++.+
T Consensus 216 G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~-----------~~~~~~~vg~i~~g~-----~~~NvVP~~a~~~~ 279 (401)
T TIGR01879 216 GESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM-----------GDPTVGTVGKVEARP-----NGVNVIPGKVTFTL 279 (401)
T ss_pred EECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-----------CCCeEEEEEEEEecC-----CceEEECCEEEEEE
Confidence 9999998643 46 99999999999998753211 112367888888752 17899999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCce
Q 013216 297 DIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPE 374 (447)
Q Consensus 297 d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 374 (447)
|+|+.|.++.+++.++|+++++. ...+++++ ++. ....|+ ...++++++.+.+++++++... ...
T Consensus 280 diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~---~~~------~~~~~~---~~~d~~lv~~l~~a~~~~g~~~-~~~ 346 (401)
T TIGR01879 280 DLRHTDAAVLRDFTQQLENDIKAISDERDIGID---IER------WMDEEP---VPCSEELVAALTELCERLGYNA-RVM 346 (401)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHHHHcCceEE---EEE------eecCCC---cCCCHHHHHHHHHHHHHcCCCc-ccc
Confidence 99999999999999999988863 22345555 431 122232 4558899999999999876554 344
Q ss_pred ecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013216 375 IFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 431 (447)
Q Consensus 375 ~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l 431 (447)
.++++||+++|...++|++.|||+... .+|++||+++++++.+++++|.+++.++
T Consensus 347 ~~~ggtDa~~~~~~~~~~v~fgPg~~~--~aH~~dE~v~~e~l~~~~~vl~~~i~~l 401 (401)
T TIGR01879 347 VSGAGHDAQILAPIVPIGMIFIPSING--ISHNPAEWSNITDCAEGAKVLYLMVYQL 401 (401)
T ss_pred ccchHHHHHHHHhhCCEEEEEecCCCC--CcCCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 567899999999988899999999764 6899999999999999999999998753
|
Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546. |
| >TIGR03176 AllC allantoate amidohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=326.96 Aligned_cols=347 Identities=14% Similarity=0.169 Sum_probs=265.1
Q ss_pred hHHHHHHHhhhcccCC--------CCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeecc
Q 013216 28 DSIIERFRAYLQIDTS--------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHT 99 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~--------s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~ 99 (447)
.++++.+.+|-+|.+. ..+..+.++.+|+.+||+++|++++... ..|++++++|..++.|+|++.+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~----~gN~~~~~~g~~~~~~~i~~gsHl 78 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDD----VGNLYGRLVGTEFPEETILTGSHI 78 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcC----CCcEEEEecCCCCCCCeEEEeccc
Confidence 4677888888887321 1255688999999999999999987533 239999999988778999999999
Q ss_pred ccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccC----cccCHHH
Q 013216 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGAEK 175 (447)
Q Consensus 100 Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~~~ 175 (447)
||||.+ |.-|.+.|+++.|++++.|++++.+++++|.++++.+||.+ ++.|++.
T Consensus 79 Dtv~~g----------------------G~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~ 136 (406)
T TIGR03176 79 DTVVNG----------------------GNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKN 136 (406)
T ss_pred cCCCCC----------------------CccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHH
Confidence 999976 22345569999999999999999999999999999999965 1457777
Q ss_pred HHcc---c-c--cc--------------------------CCceE--EEEecCCcC--cCCcceeEeeeeeeEEEEEEEe
Q 013216 176 FADS---H-V--FN--------------------------SLNVG--IVLDEGLAS--TTEDYRAFYAERCPWWLVIKAR 219 (447)
Q Consensus 176 ~~~~---~-~--~~--------------------------~~~~~--~~~d~g~~~--p~~~~~i~~~~~G~~~~~i~v~ 219 (447)
+... . . .. .++.. +.++.|..- ......++.+.+|..+++|+|+
T Consensus 137 ~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~ 216 (406)
T TIGR03176 137 IFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAPTVRDDIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLK 216 (406)
T ss_pred HhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCcccccccccccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEE
Confidence 7631 0 0 00 01111 223223321 2224678999999999999999
Q ss_pred ecCCccCCCC-C-C-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeec-CCCCCCCccccccCCceEEE
Q 013216 220 GAPGHGAKLY-D-N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKA-GTPSPNGFVMNLQPSEAEAG 295 (447)
Q Consensus 220 G~~~Hs~~p~-~-g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~-g~~~~~~~~~n~iP~~~~~~ 295 (447)
|+++|+|.|+ . + ||+..+++++..+..+... ....++++++.+++ |. +.|+||++|++.
T Consensus 217 GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~-----------~~~~~~~tvG~I~~gg~------~~NvIP~~a~~~ 279 (406)
T TIGR03176 217 GEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE-----------IGDPLVLTFGKVEPVPN------TVNVVPGETTFT 279 (406)
T ss_pred EECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCcEEEEEEEEEcCC------ceEEECCeEEEE
Confidence 9999999855 3 3 9999999999998764221 11224788999984 44 899999999999
Q ss_pred EeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCc
Q 013216 296 FDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKP 373 (447)
Q Consensus 296 ~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 373 (447)
+|+|+.+.++.+.+.++|++.++. ...+++++ +.. .....| ...++++++.+.+++++.++.. ..
T Consensus 280 ~DiR~~~~~~~e~v~~~i~~~i~~ia~~~g~~~e---i~~-----~~~~~p----~~~d~~lv~~l~~a~~~~~~~~-~~ 346 (406)
T TIGR03176 280 IDCRHTDAAVLRNFTKELENDMKAIADEMDITID---IDL-----WMDEAP----VPMNKEIVAIIEQLAKAEKLNY-RL 346 (406)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEE---EEE-----EecCCC----CCCCHHHHHHHHHHHHHcCCCc-ee
Confidence 999999999999988888887763 23455565 431 012222 3447899999999999987654 44
Q ss_pred eecCCCcchHHHHHcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 374 EIFPASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 374 ~~~~g~~D~~~~~~~g~p~-~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
..+++++|+++|.+. +|+ +.|||+..+ ..|+|||+++++++.+++++|..++..+++
T Consensus 347 ~~sggg~Da~~~~~~-vP~~~ifgp~~~g--~~H~p~E~v~~e~l~~g~~vl~~~l~~l~~ 404 (406)
T TIGR03176 347 MHSGAGHDAQIFAPR-VPTAMIFVPSIGG--ISHNPAERTNIEDLVEGVKTLADMLYELAY 404 (406)
T ss_pred cCcccHHHHHHHHHH-CCEEEEEEeCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 456689999999987 776 689998654 689999999999999999999999999876
|
This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. |
| >PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=330.95 Aligned_cols=356 Identities=16% Similarity=0.156 Sum_probs=266.4
Q ss_pred hhcCCCCChhHHHHHHHhhhcccCCC-----------CCCChhHHHHHHHHHHHHCCC-ceEEEeecCCCCeEEEEecCC
Q 013216 19 IFSSPAKSDDSIIERFRAYLQIDTSQ-----------PNPDYTNASKFILAQAEALSL-ESQTLEFAKNKPLILLKWPGS 86 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~l~~ips~s-----------~~~~e~~~~~~i~~~l~~~G~-~~~~~~~~~~~~nl~~~~~g~ 86 (447)
++.......+++++.+.+|-+|+... .+..+.++++|+.+||+++|+ +++. + ...|++++++|.
T Consensus 172 ~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~-D---~~GNl~~~~~g~ 247 (591)
T PRK13590 172 KFGAEPVLGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHI-D---AVGNVVGRYKGS 247 (591)
T ss_pred HhCCCchHHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeE-C---CCCCEEEEecCC
Confidence 34455566788999999999986521 134567999999999999999 7664 3 334999999987
Q ss_pred CCCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcc
Q 013216 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (447)
Q Consensus 87 ~~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (447)
+++.|+|++.+||||||.+ |+ .|+++|++++|++++.|.+.++.++++|.|+++++||
T Consensus 248 ~~~~~~v~~gsHlDTV~~g----------------G~------~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EE 305 (591)
T PRK13590 248 TPQAKRLLTGSHYDTVRNG----------------GK------YDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEE 305 (591)
T ss_pred CCCCCeEEEecccccCCCC----------------CC------cccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCc
Confidence 7667899999999999864 33 4677899999999999999998888999999999999
Q ss_pred cC----cccCHHHHH--------cc----cc----------c------------cCCceE--EEEecCCc--CcCCccee
Q 013216 167 IG----GHDGAEKFA--------DS----HV----------F------------NSLNVG--IVLDEGLA--STTEDYRA 204 (447)
Q Consensus 167 ~g----~~~G~~~~~--------~~----~~----------~------------~~~~~~--~~~d~g~~--~p~~~~~i 204 (447)
.+ ++.|++.+. +. +. + ..+... +.++.|.. .......+
T Consensus 306 g~rF~~~~~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~~~gv 385 (591)
T PRK13590 306 GQRYKATFLGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDLPLGI 385 (591)
T ss_pred cccCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCceEE
Confidence 63 235777532 10 00 0 001111 11222211 00113679
Q ss_pred EeeeeeeEEEEEEEeecCCccCC-CCC-C-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeec-CCCCC
Q 013216 205 FYAERCPWWLVIKARGAPGHGAK-LYD-N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKA-GTPSP 280 (447)
Q Consensus 205 ~~~~~G~~~~~i~v~G~~~Hs~~-p~~-g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~-g~~~~ 280 (447)
+.+.+|..+++|+|+|+++|+|. |.. + ||+..+++++..++.+... ...++++++.+.. |.
T Consensus 386 V~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~------------~~~~v~tVG~i~~~Gg--- 450 (591)
T PRK13590 386 VTSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ------------DGDSVGTVGMLEVPGG--- 450 (591)
T ss_pred EeeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc------------CCCcEEEEEEEEECCC---
Confidence 99999999999999999999997 443 4 9999999999988764210 0113567777763 32
Q ss_pred CCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccccccccccCCCCcccccCCCChHHHH
Q 013216 281 NGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNL 358 (447)
Q Consensus 281 ~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 358 (447)
..|+||++|++.+|+|+.+.++.+.+.++|++.++. ...+++++ ++. ....| ++..+.++++.
T Consensus 451 ---~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~~g~~ve---i~~------~~~~~---~~~~d~~lv~~ 515 (591)
T PRK13590 451 ---SINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICERRGLRYT---LEE------TMRAA---AAPSAPAWQQR 515 (591)
T ss_pred ---CCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEE---EEE------eecCC---CcCCCHHHHHH
Confidence 899999999999999999999999998888877763 23456666 441 12222 35667899999
Q ss_pred HHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013216 359 LEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~ 432 (447)
+.+++++++... ....++|++|+++|...+++++.|||+..+ ...|+++||++++++.+++++|..++..++
T Consensus 516 ~~~aa~~~G~~~-~~~~sggg~Da~~~a~~~p~~mifgpg~~~-g~sH~p~E~v~~edL~~g~~vl~~ll~~l~ 587 (591)
T PRK13590 516 WEAAVAALGLPL-FRMPSGAGHDAMKLHEIMPQAMLFVRGENA-GISHNPLESSTADDMQLAVQAFQHLLDQLA 587 (591)
T ss_pred HHHHHHHcCCCc-ccCCcchhHHHHHHHHHCCEEEEEEeeCCC-CCCCCCccCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999876654 344567899999999987778999998531 268999999999999999999999998875
|
|
| >PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=323.22 Aligned_cols=359 Identities=13% Similarity=0.102 Sum_probs=267.8
Q ss_pred hcCCCCChhHHHHHHHhhhcccC---CC--------CCCChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCCC
Q 013216 20 FSSPAKSDDSIIERFRAYLQIDT---SQ--------PNPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSN 87 (447)
Q Consensus 20 ~~~~~~~~~~~~~~l~~l~~ips---~s--------~~~~e~~~~~~i~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~~ 87 (447)
+.....-.+++++.+.+|-+|+. .. .+..+.++.+|+.+||+++|++ ++..+ ..||+++++|.+
T Consensus 173 ~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~----~gNv~~~~~g~~ 248 (591)
T PRK13799 173 FGYTPAIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDA----VGNVVGRYKAAD 248 (591)
T ss_pred hCCChhHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECC----CCCEEEEcCCCC
Confidence 44555667889999999999962 11 2345679999999999999998 87533 249999999877
Q ss_pred CCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCccc
Q 013216 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (447)
Q Consensus 88 ~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (447)
++.|.|++.+|+||||. +|+++|+ .|++++|.+++.|++.+.+++++|.|++..+||.
T Consensus 249 ~~~p~v~~gSHlDTV~~----------------gG~~DG~------~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg 306 (591)
T PRK13799 249 DDAKTLITGSHYDTVRN----------------GGKYDGR------EGIFLAIACVKELHEQGERLPFHFEVIAFAEEEG 306 (591)
T ss_pred CCCCeEEEeccccccCC----------------CCccccH------HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCc
Confidence 67799999999999985 5666666 5999999999999999999999999999999996
Q ss_pred C----cccCHHHHHc------------ccc-----ccC-----------------Cce--EEEEecCCc--CcCCcceeE
Q 013216 168 G----GHDGAEKFAD------------SHV-----FNS-----------------LNV--GIVLDEGLA--STTEDYRAF 205 (447)
Q Consensus 168 g----~~~G~~~~~~------------~~~-----~~~-----------------~~~--~~~~d~g~~--~p~~~~~i~ 205 (447)
. ++.|++.+.- ++. +.. ++. .+.++.|+. ......+++
T Consensus 307 ~rF~~~~~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~igvV 386 (591)
T PRK13799 307 QRFKATFLGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDIPLGIV 386 (591)
T ss_pred cCCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCcEEEE
Confidence 2 3457777751 111 000 011 111122211 011246789
Q ss_pred eeeeeeEEEEEEEeecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCC
Q 013216 206 YAERCPWWLVIKARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNG 282 (447)
Q Consensus 206 ~~~~G~~~~~i~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~ 282 (447)
.+.+|..+++|+|+|+++|+|. |. .+ ||+..+++++..++.+... .....++++++.++.+.
T Consensus 387 ~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~----------~~~~~~v~tVG~I~~~~----- 451 (591)
T PRK13799 387 TSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQ----------DQHASLVATMGQLNVPS----- 451 (591)
T ss_pred eeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHh----------cCCCCcEEEEEEEEecC-----
Confidence 9999999999999999999997 43 35 9999999999999764221 01112467788887531
Q ss_pred ccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccccccccccCCCCcccccCCCChHHHHHH
Q 013216 283 FVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLE 360 (447)
Q Consensus 283 ~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 360 (447)
++.|+||++|++.+|+|+.+.++.+.+.++|++.++. ...+++++ ++. ....| ++.++.++++.+.
T Consensus 452 ga~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~g~~~e---i~~------~~~~~---~~~~d~~lv~~~~ 519 (591)
T PRK13799 452 GSTNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAARRGIEYK---AEL------AMKAA---AAPCAPELMKQLE 519 (591)
T ss_pred CCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEE---EEE------EecCC---CcCCCHHHHHHHH
Confidence 1789999999999999999999999888777766652 22445555 431 12222 3466788999999
Q ss_pred HHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 361 EAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 361 ~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
+++++.+... ....+++++|+++|...+++++.|+|++.. ...|+|+||++++++..++++|.+++..+++
T Consensus 520 ~a~~~~G~~~-~~~~sgag~Da~~~a~~~p~amif~~~g~~-g~sHsp~E~v~~edL~~g~~vl~~~l~~l~~ 590 (591)
T PRK13799 520 AATDAAGVPL-FELASGAGHDAMKIAEIMDQAMLFTRCGNA-GISHNPLESMTADDMELSADAFLDFLNNFAE 590 (591)
T ss_pred HHHHHcCCCc-eecCcchHHHHHHHHhhCCEEEEEEecCCC-CCCCCccccCCHHHHHHHHHHHHHHHHHHhh
Confidence 9988877654 334567899999999998889999886432 2589999999999999999999999988753
|
|
| >PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-27 Score=211.06 Aligned_cols=183 Identities=31% Similarity=0.541 Sum_probs=149.4
Q ss_pred EEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCH
Q 013216 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (447)
Q Consensus 94 ll~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (447)
+|++||||||. .++|+++||++..+ +|++||||++|+|+++++++.|++.|++.+.+++++|.|+|+++||+|+..|+
T Consensus 1 ll~~H~Dtv~~-~~~w~~~pf~~~~~-~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~ 78 (189)
T PF01546_consen 1 LLYAHMDTVPG-PEGWKHDPFELSIE-DGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGA 78 (189)
T ss_dssp EEEEES-BCST-GGGSSSSTTSEEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHH
T ss_pred CccccccccCC-cCcCCCCCcccEEE-CCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchh
Confidence 68999999995 78999999999997 99999999999999999999999999998889999999999999999974599
Q ss_pred HHHHccc--cccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhh
Q 013216 174 EKFADSH--VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQ 251 (447)
Q Consensus 174 ~~~~~~~--~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~ 251 (447)
+.+++++ ...+.++.++.+ |+.. ....
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~e-----~~~~-~~~~--------------------------------------------- 107 (189)
T PF01546_consen 79 KHLLEEGAFFGLHPDYVIIGE-----PTGK-GGVG--------------------------------------------- 107 (189)
T ss_dssp HHHHHHCEEEEEEESEEEECE-----CETT-SEEE---------------------------------------------
T ss_pred hhhhhhccccccccccccccc-----cccc-cccc---------------------------------------------
Confidence 9999873 112234444432 2221 1111
Q ss_pred HHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccc
Q 013216 252 FDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQF 331 (447)
Q Consensus 252 ~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 331 (447)
.
T Consensus 108 ---------------------------------------------------------------------------~---- 108 (189)
T PF01546_consen 108 ---------------------------------------------------------------------------S---- 108 (189)
T ss_dssp ---------------------------------------------------------------------------H----
T ss_pred ---------------------------------------------------------------------------c----
Confidence 2
Q ss_pred cccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHH---HcCCCeEEEccCCCCCCCCCCC
Q 013216 332 KQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFR---ERGLPAIGFSPMANTPILLHDH 408 (447)
Q Consensus 332 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~---~~g~p~~~~gp~~~~~~~~H~~ 408 (447)
..+.++++.+.+++++.++....+...++++|++++. ..++|++.|||+.. .+|++
T Consensus 109 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tD~~~~~~~~~~~~~~i~~G~~~~---~~H~~ 167 (189)
T PF01546_consen 109 ------------------DNDPPLVQALQAAAQEVGGEPPEPVASGGGTDAGFLAEVKGLGIPAIGFGPGGS---NAHTP 167 (189)
T ss_dssp ------------------CTCHHHHHHHHHHHHHTTSSEEEEEEESSSSTHHHHHCHHHTTEEEEEEESCEE---STTST
T ss_pred ------------------cccHHHHHHHHHHHHHHhhccccccceeccccchhhhhhhccccceeeeCCCCC---CCCCC
Confidence 2245799999999999987323667888999999999 56899999999984 69999
Q ss_pred CccccHHHHHHHHHHHHHHHH
Q 013216 409 NEFLNQAEYLKGIDIYESIIK 429 (447)
Q Consensus 409 ~E~v~~~~l~~~~~~~~~~l~ 429 (447)
||+++++++.+++++|+.+++
T Consensus 168 ~E~i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 168 DEYIDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp T-EEEHHHHHHHHHHHHHHHH
T ss_pred CcEecHHHHHHHHHHHHHHHh
Confidence 999999999999999999886
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B .... |
| >COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=215.92 Aligned_cols=362 Identities=19% Similarity=0.177 Sum_probs=266.6
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceE-EEee-------cCCCCeEEEEecCCCCCCCeEEEee
Q 013216 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ-TLEF-------AKNKPLILLKWPGSNPQLPSILLNS 97 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~-~~~~-------~~~~~nl~~~~~g~~~~~~~ill~~ 97 (447)
..+++++.+.++++||+.| .++++++.++..|++.+|+.++ .+.. ..+..-+.++++++.+--|.+-+.+
T Consensus 3 ~~~~l~~~F~~~~kI~~~S--~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~s 80 (414)
T COG2195 3 KMERLLDRFLELVKIPTQS--KHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFIS 80 (414)
T ss_pred chHHHHHHHHHHeeCCCCC--CCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeeccccccccccccc
Confidence 5678999999999999985 7888999999999999999883 1111 1121135566777655457899999
Q ss_pred ccccCCCC-----CCCC---------------------CcCCCceeeCCCCcEEecCc----ccchhHHHHHHHHHHHHH
Q 013216 98 HTDVVPSE-----PSKW---------------------SHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLK 147 (447)
Q Consensus 98 H~Dtvp~~-----~~~W---------------------~~~Pf~~~~~~~g~l~GrG~----~D~k~~~a~~l~a~~~l~ 147 (447)
|+||+|.. +.+| .++|.......+.-+.-.|+ +|+|+|++.++.++..+.
T Consensus 81 h~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~ 160 (414)
T COG2195 81 HHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLR 160 (414)
T ss_pred cccccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHh
Confidence 99999642 1334 13344333321133444565 699999999999999999
Q ss_pred HcC-CCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccC
Q 013216 148 ASG-FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA 226 (447)
Q Consensus 148 ~~~-~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~ 226 (447)
+.. .-++++|++.|+++||.|+ .|+..+.-. ++. +++++.+|+| + ...+.+...+...+++++.|+..|++
T Consensus 161 ~~~~~i~h~~i~~g~s~~Ee~g~-rg~~~~~~a-~f~-a~~ay~iDGg---~--~g~i~~ea~~~~~~~~~~~g~~~h~~ 232 (414)
T COG2195 161 EKHPEIPHGGIRGGFSPDEEIGG-RGAANKDVA-RFL-ADFAYTLDGG---P--VGEIPREAFNAAAVRATIVGPNVHPG 232 (414)
T ss_pred hcCccccccCeEEEecchHHhhh-hhhhhccHH-hhh-cceeEecCCC---c--cCeeeeeccchheeeeeeeccCcCcc
Confidence 762 3478999999999999986 688776543 443 5789999943 2 24788888999999999999999988
Q ss_pred CCC-CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCC
Q 013216 227 KLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTT 304 (447)
Q Consensus 227 ~p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~ 304 (447)
... .. |++..+.+++..+..... ...++...+..+.+. ..|.|.+.+.....+|..+..
T Consensus 233 ~a~~~~i~a~~~a~e~~~~~~~~~~-------------~e~t~~~~Gv~~~~~------~~~~V~~~s~~~~~iR~~d~~ 293 (414)
T COG2195 233 SAKGKMINALLLAAEFILELPLEEV-------------PELTEGPEGVYHLGD------STNSVEETSLNLAIIRDFDNL 293 (414)
T ss_pred chHHHHhhHHHhhhhhhhcCCcccc-------------cccccccceEEeccc------cccchhhhhhhhhhhhhcchh
Confidence 643 22 666655555554432111 012455566666665 889999999999999999987
Q ss_pred CHHHHHHHHHHHhcc----CC--CCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCC
Q 013216 305 DAESLERRIVEEWAP----AS--RNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPA 378 (447)
Q Consensus 305 ~~~~i~~~i~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g 378 (447)
..+..+..++++++. .. .+++++ + ...||.+ ....++++++.+++++++++.++ ......|
T Consensus 294 ~~~s~~~~~~~~~~~~~~~~g~~~~~~~~---~--------~~~Yp~~-~~~~~~~iv~~a~~a~~~l~~~p-~v~~i~g 360 (414)
T COG2195 294 LFRARKDSMKDVVEEMAASLGKLAGAELE---V--------KDSYPGW-KIKPDSPLVDLAKKAYKELGIKP-KVKPIHG 360 (414)
T ss_pred HHHHhHHHHHHHHHHHHHHhhhccceEEE---E--------eccccCc-CCCCCchHHHHHHHHHHHhCCCc-eEEEeec
Confidence 777777777776652 11 334444 3 2456665 56778999999999999999884 7778889
Q ss_pred CcchHHHHHcCCCe--EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 379 STDARYFRERGLPA--IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 379 ~~D~~~~~~~g~p~--~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
|+|++.+...|+|+ +..|| .. +.|+++|+++++++.+.+.++..++..+.+
T Consensus 361 Gtd~~~is~~g~p~~~i~~Gp-~~---n~Hs~~E~v~I~s~ek~~~~l~~l~~~~~~ 413 (414)
T COG2195 361 GTDGGVLSFKGLPTPNISTGP-GE---NPHSPDEFVSIESMEKAVQVLVELLKLAAA 413 (414)
T ss_pred ccchhhhhccCCCCceEeccc-cc---CCCCccceeehHHHHHHHHHHHHHHHHhhc
Confidence 99999999998775 46666 44 599999999999999999999998887653
|
|
| >COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=178.25 Aligned_cols=276 Identities=18% Similarity=0.163 Sum_probs=192.0
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCC-ceE-------EEeecC-CCCeEEEEecCCCCCCCeEEEe
Q 013216 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSL-ESQ-------TLEFAK-NKPLILLKWPGSNPQLPSILLN 96 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~-~~~-------~~~~~~-~~~nl~~~~~g~~~~~~~ill~ 96 (447)
..+++.++..+|++-||++.+.+|...+++|...|.++.. +.. -++..+ ++.||+|-++|.. .+++|++.
T Consensus 6 s~e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~-~k~tvvl~ 84 (553)
T COG4187 6 SSERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGT-SKRTVVLH 84 (553)
T ss_pred hHHHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCC-CCceEEEe
Confidence 3789999999999999999899999999999999888752 111 112122 7889999999843 46899999
Q ss_pred eccccCCCCC-CCCCcCCCcee-----------e---------CCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCce
Q 013216 97 SHTDVVPSEP-SKWSHHPFGAH-----------L---------DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVR 155 (447)
Q Consensus 97 ~H~Dtvp~~~-~~W~~~Pf~~~-----------~---------~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~ 155 (447)
||+|||...+ ...+.-.|.+. . +.++||+|||+.|||+|+|+.|++++.+.+++ ...+
T Consensus 85 gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~~-~~~G 163 (553)
T COG4187 85 GHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAART-DRQG 163 (553)
T ss_pred eccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhCC-CCCC
Confidence 9999999875 22332233330 0 15789999999999999999999999999874 5789
Q ss_pred eEEEEeecCcccCcccCHHHHHccc-ccc---CCc--eEEEEecCCc-CcC-CcceeEeeeeeeEEEEEEEeecCCccCC
Q 013216 156 SVYLSFVPDEEIGGHDGAEKFADSH-VFN---SLN--VGIVLDEGLA-STT-EDYRAFYAERCPWWLVIKARGAPGHGAK 227 (447)
Q Consensus 156 ~i~~~~~~~EE~g~~~G~~~~~~~~-~~~---~~~--~~~~~d~g~~-~p~-~~~~i~~~~~G~~~~~i~v~G~~~Hs~~ 227 (447)
||.|+.+||||..+ .|++..+..- .+. .++ .+|+.|.-.. .++ ..-.++.|..|....-+-|.|...|.|.
T Consensus 164 NlLf~a~pdEE~~s-~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG~etHvG~ 242 (553)
T COG4187 164 NLLFMAVPDEEVES-RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVGCETHVGY 242 (553)
T ss_pred cEEEEeccchhhhc-ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEeeccccCC
Confidence 99999999999886 6888776531 111 122 2444442110 111 1236888999999999999999999999
Q ss_pred CCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCc-ceeeeeeeecCCCCCCCcccc-ccCCceEEEEeeecCCCC
Q 013216 228 LYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV-VSVNMAFLKAGTPSPNGFVMN-LQPSEAEAGFDIRVPPTT 304 (447)
Q Consensus 228 p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~-~t~~~~~i~~g~~~~~~~~~n-~iP~~~~~~~d~R~~~~~ 304 (447)
|+.| ||-..+++++..|+. +....+... +. ..+. +.+.....+-+ .| +.|.++.+.|++=+.. .
T Consensus 243 ~f~Gvnan~maSei~~~le~-N~~l~dr~~-Ge--~t~PPs~L~qkDlKe~--------Y~VqTp~~a~~~fN~l~h~-~ 309 (553)
T COG4187 243 PFEGVNANFMASEITRRLEL-NADLADRVD-GE--ITPPPSCLEQKDLKES--------YNVQTPERAWLYFNWLYHS-R 309 (553)
T ss_pred cccCCCHHHHHHHHHHHhhc-ChhhhhhhC-Ce--eCCCcHhhhhhhhhhh--------ccccCcchhhhhheehhhc-C
Confidence 9999 999999998888753 222222211 10 0111 12222333332 23 3688888888887664 5
Q ss_pred CHHHHHHHHHHHh
Q 013216 305 DAESLERRIVEEW 317 (447)
Q Consensus 305 ~~~~i~~~i~~~~ 317 (447)
+.+++.+++++.+
T Consensus 310 ta~~~~d~l~~~a 322 (553)
T COG4187 310 TAKELFDRLKEEA 322 (553)
T ss_pred CHHHHHHHHHHHH
Confidence 6666766665433
|
|
| >PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=159.73 Aligned_cols=122 Identities=18% Similarity=0.218 Sum_probs=97.0
Q ss_pred CCCChhHHHHHHHHHHHHCCCceEEEeec--------C--------CCCeEEEEecCCCCCCCeEEEeeccccCCCCC-C
Q 013216 45 PNPDYTNASKFILAQAEALSLESQTLEFA--------K--------NKPLILLKWPGSNPQLPSILLNSHTDVVPSEP-S 107 (447)
Q Consensus 45 ~~~~e~~~~~~i~~~l~~~G~~~~~~~~~--------~--------~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~-~ 107 (447)
.+++|.++++||.++|+++|++++..... . ...||++.++|+. .+.|+|.||+|||++.. .
T Consensus 50 gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~~ 127 (346)
T PRK10199 50 GSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKA--PQQIIIMAHLDTYAPQSDA 127 (346)
T ss_pred CCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCC--CCeEEEEEEcCcCCCCCCC
Confidence 46789999999999999999988754311 1 1257999998853 37899999999997542 2
Q ss_pred CCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcc
Q 013216 108 KWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (447)
Q Consensus 108 ~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (447)
+| ++. .+-++++|++|||+|++++|++++.|.+.+ ++++|.|+++++||.|. .|+++++++
T Consensus 128 ~~---~~~-----~~g~~~~GA~DnasGvA~lLe~ar~l~~~~--~~~~I~fv~~~~EE~Gl-~GS~~~~~~ 188 (346)
T PRK10199 128 DV---DAN-----LGGLTLQGMDDNAAGLGVMLELAERLKNVP--TEYGIRFVATSGEEEGK-LGAENLLKR 188 (346)
T ss_pred cc---ccC-----CCCcccCCccccHHHHHHHHHHHHHHhhCC--CCCcEEEEEECCcccCc-HHHHHHHHh
Confidence 21 111 233899999999999999999999998654 67899999999999985 799999986
|
|
| >TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-15 Score=145.23 Aligned_cols=134 Identities=20% Similarity=0.240 Sum_probs=106.7
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCC--
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS-- 104 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~-- 104 (447)
.+.++++|++|+++||+| +.|.++++++.++|+++|++++. + +..|+++.++|.. +.++|+|.||||+|..
T Consensus 2 ~~~~~~lLk~Lv~~~s~S--G~E~~V~~~l~~~l~~~g~ev~~-D---~~Gnlia~~~g~~-~~~~v~l~aHmDevG~~V 74 (343)
T TIGR03106 2 TDYLTETLLALLAIPSPT--GFTDAVVRYVAERLEDLGIEYEL-T---RRGAIRATLPGRE-ATPARAVVTHLDTLGAMV 74 (343)
T ss_pred hHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHcCCeEEE-C---CCeEEEEEECCCC-CCCeEEEEEeecccccee
Confidence 466899999999999975 88999999999999999998774 3 4559999987743 2479999999999933
Q ss_pred --------------CCC----------------C------C--C-------------cCCCc---ee-------------
Q 013216 105 --------------EPS----------------K------W--S-------------HHPFG---AH------------- 117 (447)
Q Consensus 105 --------------~~~----------------~------W--~-------------~~Pf~---~~------------- 117 (447)
++- + + . .++++ ..
T Consensus 75 ~~I~~~G~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~ 154 (343)
T TIGR03106 75 RELKDNGRLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVR 154 (343)
T ss_pred eEECCCCeEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHH
Confidence 100 0 0 0 00111 00
Q ss_pred -----------------eCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCc
Q 013216 118 -----------------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG 169 (447)
Q Consensus 118 -----------------~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~ 169 (447)
. +++++|||+ .|||+++++++.+++.|.+.+.+++.+|+++|+.+||.|+
T Consensus 155 lGV~~Gd~v~~~~~~~~~-~~~~i~gr~-~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 155 LGISVGDFVAFDPQPEFL-ANGFIVSRH-LDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGS 221 (343)
T ss_pred cCCCCCCEEEECCccEEe-cCCEEEEEe-cccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCc
Confidence 1 478999998 9999999999999999998877788999999999999984
|
This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family. |
| >PRK09961 exoaminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=145.03 Aligned_cols=256 Identities=16% Similarity=0.239 Sum_probs=173.3
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC-----
Q 013216 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE----- 105 (447)
Q Consensus 31 ~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~----- 105 (447)
+++|++|+++|++| +.|.++++++.++|+++|.+++. + +..|+++.+.|. +.|+|+|.||||+|+.-
T Consensus 3 ~~~L~~L~~~~s~s--G~E~~v~~~i~~~l~~~~~~v~~-D---~~Gnvi~~~~g~--~~~~v~l~aHmDevg~~V~~I~ 74 (344)
T PRK09961 3 LSLLKALSEADAIA--SSEQEVRQILLEEADRLQKEVRF-D---GLGSVLIRLNES--TGPKVMICAHMDEVGFMVRSIS 74 (344)
T ss_pred HHHHHHHHhCCCCC--CChHHHHHHHHHHHHhhCCEEEE-C---CCCCEEEEEcCC--CCCEEEEEeccceeceEEEEEC
Confidence 46799999999985 89999999999999999998763 3 556999988663 34799999999999431
Q ss_pred --------C-CCCCc----------------------------CCCc-eeeC----------------------------
Q 013216 106 --------P-SKWSH----------------------------HPFG-AHLD---------------------------- 119 (447)
Q Consensus 106 --------~-~~W~~----------------------------~Pf~-~~~~---------------------------- 119 (447)
+ .+|.. +++. ..++
T Consensus 75 ~~G~l~~~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~ 154 (344)
T PRK09961 75 REGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQV 154 (344)
T ss_pred CCceEEEEeCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEE
Confidence 0 12210 1111 1111
Q ss_pred -CCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEecCCcCc
Q 013216 120 -SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAST 198 (447)
Q Consensus 120 -~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p 198 (447)
.++++.||. .|++.++++++.+++.+.+. +++.+++++|+..||.|. .|++..... ++ .|+++++|.+.
T Consensus 155 ~~~~~i~gka-lDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~-rGa~~aa~~--i~-pd~~I~vDv~~--- 224 (344)
T PRK09961 155 LPHQRVMGKA-FDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGL-RGGQTATRA--VS-PDVAIVLDTAC--- 224 (344)
T ss_pred ecCCEEEEee-chhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccch-HHHHHHHhc--cC-CCEEEEEeccC---
Confidence 356788866 99999999999999999765 367899999999999995 798876542 32 47777776421
Q ss_pred CCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCC
Q 013216 199 TEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTP 278 (447)
Q Consensus 199 ~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~ 278 (447)
|.-.|... ......+
T Consensus 225 -------------------------~~d~~~~~-----------------------------------~~~~~~l----- 239 (344)
T PRK09961 225 -------------------------WAKNFDYG-----------------------------------AANHRQI----- 239 (344)
T ss_pred -------------------------CCCCCCCC-----------------------------------CCccccc-----
Confidence 00000000 0000000
Q ss_pred CCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCCChHHHH
Q 013216 279 SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNL 358 (447)
Q Consensus 279 ~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 358 (447)
..+..+. +. . . ....+.++.+.
T Consensus 240 ------------------------------------------g~Gp~i~---~~---------D-~---~~i~~~~l~~~ 261 (344)
T PRK09961 240 ------------------------------------------GNGPMLV---LS---------D-K---SLIAPPKLTAW 261 (344)
T ss_pred ------------------------------------------CCCceEE---Ec---------c-C---CcCCCHHHHHH
Confidence 1111111 00 0 0 01224566666
Q ss_pred HHHHHHHhcCCCCCceec-CCCcchHHHHH--cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013216 359 LEEAVRKANGKLGKPEIF-PASTDARYFRE--RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 431 (447)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~-~g~~D~~~~~~--~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l 431 (447)
+++++++.+.+. +.... +|+||++.+.. .|+|++.+||+.. ..|+++|+++++++..++++|..++..+
T Consensus 262 l~~~A~~~~Ip~-Q~~~~~ggGTDa~~~~~~~~Giptv~ig~p~r---y~Hs~~E~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 262 IETVAAEIGIPL-QADMFSNGGTDGGAVHLTGTGVPTVVMGPATR---HGHCAASIADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred HHHHHHHcCCCc-EEEecCCCcchHHHHHHhCCCCCEEEechhhh---cccChhheEEHHHHHHHHHHHHHHHHHc
Confidence 667776666443 32222 36799997765 6999999999865 5999999999999999999999998665
|
|
| >TIGR03107 glu_aminopep glutamyl aminopeptidase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-13 Score=132.20 Aligned_cols=149 Identities=15% Similarity=0.205 Sum_probs=109.5
Q ss_pred HHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC------
Q 013216 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE------ 105 (447)
Q Consensus 32 ~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~------ 105 (447)
++|++|+++|++| +.|.++++++.++|++++.+++. + +..|+++.++|...+.|+|+|.||||+|+.-
T Consensus 2 ~~L~~L~~~~gpS--G~E~~v~~~i~~~l~~~~~~v~~-D---~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~ 75 (350)
T TIGR03107 2 NKIKEVTELQGTS--GFEHPIRDYLRQDITPLVDQVET-D---GLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKP 75 (350)
T ss_pred hHHHHHHhCCCCC--CCcHHHHHHHHHHHHhhCCEEEE-C---CCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECC
Confidence 5699999999985 89999999999999999987664 3 3449999987641234799999999999210
Q ss_pred -------C-CCCC-------------cC--CCcee-------------------------eC------------------
Q 013216 106 -------P-SKWS-------------HH--PFGAH-------------------------LD------------------ 119 (447)
Q Consensus 106 -------~-~~W~-------------~~--Pf~~~-------------------------~~------------------ 119 (447)
+ .+|. .+ ++.+. ++
T Consensus 76 ~G~l~~~~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd 155 (350)
T TIGR03107 76 DGTFRVVELGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGD 155 (350)
T ss_pred CceEEEEeCCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCC
Confidence 0 1110 11 10000 00
Q ss_pred ------------CCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCce
Q 013216 120 ------------SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (447)
Q Consensus 120 ------------~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~ 187 (447)
.++++.||+ .|++.++++++.+++.|.+. +++.+++++|+..||.|. .|++..... ++ .|+
T Consensus 156 ~v~~~~~~~~~~~~~~i~~ka-lDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~-rGA~~aa~~--i~-pD~ 228 (350)
T TIGR03107 156 VIVPQTETILTANGKNVISKA-WDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGL-RGAHVSTTK--FN-PDI 228 (350)
T ss_pred EEEECCCeEEEcCCCEEEEec-cccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCc-hhhhhHHhh--CC-CCE
Confidence 235677777 89999999999999999865 467899999999999995 799876442 32 478
Q ss_pred EEEEec
Q 013216 188 GIVLDE 193 (447)
Q Consensus 188 ~~~~d~ 193 (447)
+|++|.
T Consensus 229 aI~vDv 234 (350)
T TIGR03107 229 FFAVDC 234 (350)
T ss_pred EEEEec
Confidence 888885
|
This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes |
| >COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=125.87 Aligned_cols=152 Identities=20% Similarity=0.330 Sum_probs=113.1
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC--
Q 013216 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE-- 105 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~-- 105 (447)
++++++|++|..+|+.| +.|.++.+++.+.|++++.+++. + +..|+++.++|.+ +.+.|++.||||++..-
T Consensus 2 ~~~~~~LkeL~~~~gps--G~E~eVr~~~~~el~~~~~ev~~-D---~lGnlia~~~g~~-g~~~imi~AHmDEiG~mV~ 74 (355)
T COG1363 2 EELLELLKELLEAPGPS--GYEEEVRDVLKEELEPLGDEVEV-D---RLGNLIAKKGGKN-GPPKVMIAAHMDEIGFMVK 74 (355)
T ss_pred hHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHHHHhCCceEE-c---CCCcEEEEecCCC-CCccEEEEeecceeeeeEE
Confidence 56789999999999975 89999999999999999998874 3 4459999998832 33669999999999110
Q ss_pred -----------C-CCCCcC---------------CCceee-------------------------C--------------
Q 013216 106 -----------P-SKWSHH---------------PFGAHL-------------------------D-------------- 119 (447)
Q Consensus 106 -----------~-~~W~~~---------------Pf~~~~-------------------------~-------------- 119 (447)
+ .+|... ++.+.+ +
T Consensus 75 ~I~~~G~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI 154 (355)
T COG1363 75 EIEDDGFLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGI 154 (355)
T ss_pred EECCCceEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCC
Confidence 0 112100 111110 0
Q ss_pred ---------------CCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccC
Q 013216 120 ---------------SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (447)
Q Consensus 120 ---------------~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (447)
.++++-+|. .|+|.++++++.+++.| + +.+++.+++|+|+..||.|. .|++....+ ++
T Consensus 155 ~vGd~v~~~~~~~~l~~~~i~ska-lDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGl-rGA~~~a~~--i~- 227 (355)
T COG1363 155 RVGDFVVFDPRFRELANGRVVSKA-LDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGL-RGAKTSAFR--IK- 227 (355)
T ss_pred CCCCEEEEcCceEEecCCcEEeee-ccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhcc-chhhccccc--cC-
Confidence 346666665 89999999999999999 5 66789999999999999995 788776542 32
Q ss_pred CceEEEEec
Q 013216 185 LNVGIVLDE 193 (447)
Q Consensus 185 ~~~~~~~d~ 193 (447)
.|+++.+|.
T Consensus 228 pd~aiavd~ 236 (355)
T COG1363 228 PDIAIAVDV 236 (355)
T ss_pred CCEEEEEec
Confidence 467777765
|
|
| >PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 [] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-14 Score=115.79 Aligned_cols=104 Identities=22% Similarity=0.316 Sum_probs=88.3
Q ss_pred eeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhH-HHHHhccccCCCcceeeeeeeecCCCCCCCc
Q 013216 206 YAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQF-DLVKAGLKAEGEVVSVNMAFLKAGTPSPNGF 283 (447)
Q Consensus 206 ~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~-~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~ 283 (447)
++++|..+++|+++|+++|+|.|+.+ ||+..+++++..|..+..... .. .......++++++.+++|.
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~~----~~~~~~~~~~~~~~i~gG~------ 70 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFRP----EEFFPGPPTLNIGSIEGGT------ 70 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTSTH----HHCTCTSEEEEEEEEEEES------
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhccccccc----ccccccccceeEeecccCC------
Confidence 57899999999999999999999999 999999999999987643210 00 0112345799999999997
Q ss_pred cccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc
Q 013216 284 VMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP 319 (447)
Q Consensus 284 ~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~ 319 (447)
..|+||++|++++++|+.|.++.+++++.|++.+++
T Consensus 71 ~~n~ip~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 71 APNVIPDEATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp STTEESSEEEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred cCCEECCEEEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988863
|
This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A .... |
| >PRK09864 putative peptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-12 Score=122.24 Aligned_cols=145 Identities=19% Similarity=0.254 Sum_probs=108.6
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC-----
Q 013216 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE----- 105 (447)
Q Consensus 31 ~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~----- 105 (447)
+++|++|+++|++| +.|.++++++.++|++++.+++. + +..|+++.. |. +.++|+|.||||+|+.-
T Consensus 3 ~~~L~~L~~~~g~S--G~E~~v~~~l~~~l~~~~dev~~-D---~~GNli~~~-g~--~~~kvml~AHmDevG~mV~~I~ 73 (356)
T PRK09864 3 IELLQQLCEASAVS--GDEQEVRDILINTLEPCVNEITF-D---GLGSFVARK-GN--KGPKVAVVGHMDEVGFMVTHID 73 (356)
T ss_pred HHHHHHHHcCCCCC--CchHHHHHHHHHHHHHhCCEEEE-C---CCCCEEEEe-CC--CCcEEEEEecccccCEEEEEEC
Confidence 46799999999985 89999999999999999998763 3 344999986 53 33799999999999211
Q ss_pred --------C-CCCC-------------c-C-CCceee------------------------C------------------
Q 013216 106 --------P-SKWS-------------H-H-PFGAHL------------------------D------------------ 119 (447)
Q Consensus 106 --------~-~~W~-------------~-~-Pf~~~~------------------------~------------------ 119 (447)
+ .+|. . . ++.+.+ +
T Consensus 74 ~~G~l~~~~lGG~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD 153 (356)
T PRK09864 74 ESGFLRFTTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGD 153 (356)
T ss_pred CCCeEEEEeCCCcCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCC
Confidence 0 1221 1 1 122111 0
Q ss_pred -----------CCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceE
Q 013216 120 -----------SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG 188 (447)
Q Consensus 120 -----------~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~ 188 (447)
.++++.||. .|++.++++++.+++.|.+ ++.+++++|+..||.|. .|++..... ++ +|++
T Consensus 154 ~v~~~~~~~~l~~~~i~~ka-lDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGl-rGA~~aa~~--i~-PDia 224 (356)
T PRK09864 154 FISPEANFACWGEDKVVGKA-LDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGL-RGAQTSAEH--IK-PDVV 224 (356)
T ss_pred EEEECCCcEEEcCCEEEEEe-CccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcch-HHHHHHHhc--CC-CCEE
Confidence 356677776 8999999999999998854 67899999999999995 799886543 32 4788
Q ss_pred EEEec
Q 013216 189 IVLDE 193 (447)
Q Consensus 189 ~~~d~ 193 (447)
|++|.
T Consensus 225 IavDv 229 (356)
T PRK09864 225 IVLDT 229 (356)
T ss_pred EEEec
Confidence 88885
|
|
| >KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-08 Score=105.09 Aligned_cols=147 Identities=27% Similarity=0.337 Sum_probs=109.9
Q ss_pred ChhHHHHHHHhhhcc-cCCCCC-CChhHHHHHHHHHHHHCCCceEE----Eee-----------------cCCCCeEEEE
Q 013216 26 SDDSIIERFRAYLQI-DTSQPN-PDYTNASKFILAQAEALSLESQT----LEF-----------------AKNKPLILLK 82 (447)
Q Consensus 26 ~~~~~~~~l~~l~~i-ps~s~~-~~e~~~~~~i~~~l~~~G~~~~~----~~~-----------------~~~~~nl~~~ 82 (447)
..++.++.+.++.++ |....+ .+|..+.+++.+.+++..-..+. .+. ..+..||+..
T Consensus 55 ~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVk 134 (834)
T KOG2194|consen 55 SEARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVK 134 (834)
T ss_pred HHHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEe
Confidence 456788889999988 544322 35667888888888775322221 111 1244699999
Q ss_pred ecCCCC-CCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEe
Q 013216 83 WPGSNP-QLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSF 161 (447)
Q Consensus 83 ~~g~~~-~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 161 (447)
+.+... ....|++.+|+|+||.++ ||.|+..++++||+++|.+.+....+..+|+|+|
T Consensus 135 i~~k~~~~~~~lLlnaHfDSvpt~~---------------------gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLf 193 (834)
T KOG2194|consen 135 ISPKNGNDKNALLLNAHFDSVPTGP---------------------GATDDGSGVASMLEALRVLSKSDKLLTHSVVFLF 193 (834)
T ss_pred cCCCCCCccceeeeeccccccCCCC---------------------CCCcchhHHHHHHHHHHHhhcCCCcccccEEEEe
Confidence 865433 334799999999999874 7788899999999999999998877899999999
Q ss_pred ecCcccCcccCHHHHHcccccc-CCceEEEEecC
Q 013216 162 VPDEEIGGHDGAEKFADSHVFN-SLNVGIVLDEG 194 (447)
Q Consensus 162 ~~~EE~g~~~G~~~~~~~~~~~-~~~~~~~~d~g 194 (447)
-.+||.+ +.|+..++.++.+. .+...+++|.+
T Consensus 194 NgaEE~~-L~gsH~FItQH~w~~~~ka~INLea~ 226 (834)
T KOG2194|consen 194 NGAEESG-LLGSHAFITQHPWSKNIKAVINLEAA 226 (834)
T ss_pred cCcccch-hhhcccceecChhhhhhheEEecccc
Confidence 9999988 58999999976543 35677777753
|
|
| >PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-08 Score=90.46 Aligned_cols=86 Identities=28% Similarity=0.385 Sum_probs=67.2
Q ss_pred eEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCccc
Q 013216 92 SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD 171 (447)
Q Consensus 92 ~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~ 171 (447)
.|++.||+|+++.. .++ -++.|+.|+..|++++|++++.|.+.+.+++++|+|+|..+||.|. .
T Consensus 2 ~ivi~aH~Ds~~~~--------------~~~-~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl-~ 65 (179)
T PF04389_consen 2 YIVIGAHYDSVGGD--------------ADG-SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGL-L 65 (179)
T ss_dssp EEEEEEE--BESCC--------------C-T-CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTS-H
T ss_pred EEEEEeecCCCCCc--------------CCC-cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCc-c
Confidence 58999999999822 123 6677999999999999999999999877788999999999999985 7
Q ss_pred CHHHHHccc--cccCCceEEEEec
Q 013216 172 GAEKFADSH--VFNSLNVGIVLDE 193 (447)
Q Consensus 172 G~~~~~~~~--~~~~~~~~~~~d~ 193 (447)
|++.++++. ...++.+.+++|.
T Consensus 66 GS~~~~~~~~~~~~~~~~~inlD~ 89 (179)
T PF04389_consen 66 GSRAFVEHDHEELDNIAAVINLDM 89 (179)
T ss_dssp HHHHHHHHHHCHHHHEEEEEEECS
T ss_pred chHHHHHhhhcccccceeEEeccc
Confidence 999999732 2334566788875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A .... |
| >PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-06 Score=80.81 Aligned_cols=67 Identities=28% Similarity=0.375 Sum_probs=54.3
Q ss_pred CCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEec
Q 013216 120 SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDE 193 (447)
Q Consensus 120 ~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~ 193 (447)
.++++.||. .|++.++++++.+++.|.+.+ +..+++|+|+..||.|. .|+.....+ + ++|+++++|.
T Consensus 124 ~~~~i~gka-lDdR~g~~~lle~l~~l~~~~--~~~~v~~v~tvqEEvG~-rGA~~aa~~--i-~PD~ai~vD~ 190 (292)
T PF05343_consen 124 GNGRIVGKA-LDDRAGCAVLLELLRELKEKE--LDVDVYFVFTVQEEVGL-RGAKTAAFR--I-KPDIAIAVDV 190 (292)
T ss_dssp TTTEEEETT-HHHHHHHHHHHHHHHHHTTSS---SSEEEEEEESSCTTTS-HHHHHHHHH--H--CSEEEEEEE
T ss_pred CCCEEEEEe-CCchhHHHHHHHHHHHHhhcC--CCceEEEEEEeeeeecC-cceeecccc--c-CCCEEEEEee
Confidence 466688887 899999999999999998864 45999999999999995 799887653 2 2477888875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A .... |
| >KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=72.56 Aligned_cols=134 Identities=18% Similarity=0.173 Sum_probs=97.1
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCC-------CCeEEEEecCCCCCCCeEEEeec
Q 013216 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKN-------KPLILLKWPGSNPQLPSILLNSH 98 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~-------~~nl~~~~~g~~~~~~~ill~~H 98 (447)
+..++.+.|.-+. +|.+-++.+..++.++|++.|+.+|+.++.....+. -.|+++++..+ ....+++.+|
T Consensus 49 ~~~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~--A~r~lVlach 125 (338)
T KOG3946|consen 49 DWNRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPN--ASRYLVLACH 125 (338)
T ss_pred CHHHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCC--cchheeeecc
Confidence 4555666644433 344334677889999999999999999886443321 23899998654 3477999999
Q ss_pred cccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCC----CCceeEEEEeecCcc-------c
Q 013216 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGF----QPVRSVYLSFVPDEE-------I 167 (447)
Q Consensus 99 ~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~----~~~~~i~~~~~~~EE-------~ 167 (447)
+|+--.. ++. =+|+.|...++|+++..++.|.+.-. .....+.++|.-+|| .
T Consensus 126 ydsk~~p---------------~~~--~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~ 188 (338)
T KOG3946|consen 126 YDSKIFP---------------GGM--FVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPE 188 (338)
T ss_pred cccccCC---------------Ccc--eEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCc
Confidence 9996543 222 23899999999999999999977422 345689999999998 3
Q ss_pred CcccCHHHHHcc
Q 013216 168 GGHDGAEKFADS 179 (447)
Q Consensus 168 g~~~G~~~~~~~ 179 (447)
++.+|++++.++
T Consensus 189 DSlYGsRhLA~~ 200 (338)
T KOG3946|consen 189 DSLYGSRHLAAK 200 (338)
T ss_pred cccchHHHHHHH
Confidence 457899998774
|
|
| >COG2234 Iap Predicted aminopeptidases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00024 Score=72.39 Aligned_cols=102 Identities=25% Similarity=0.242 Sum_probs=71.9
Q ss_pred eEEEEecCCCCCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeE
Q 013216 78 LILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSV 157 (447)
Q Consensus 78 nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i 157 (447)
|+++++.++......+...+|.|.+-... +++ +..-.+.|+.|+..|++++|++++.|.... ++.+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------a~~--~s~~~~~GA~DNasGva~llEiAr~l~~~~--p~~~v 252 (435)
T COG2234 186 NVAATISGSSQIIEAIIGTAHSDSLGLLG---------AHI--DSVPTGPGADDNASGVAALLELARVLKGNP--PKRTV 252 (435)
T ss_pred EEeeeeecccccceEEEeccCCCceeeec---------ccc--cCCcCCCCcccccHHHHHHHHHHHHHhcCC--CCceE
Confidence 66666665522334566666666665542 112 234445699999999999999999998875 78999
Q ss_pred EEEeecCcccCcccCHHHHHcccc---ccCCceEEEEec
Q 013216 158 YLSFVPDEEIGGHDGAEKFADSHV---FNSLNVGIVLDE 193 (447)
Q Consensus 158 ~~~~~~~EE~g~~~G~~~~~~~~~---~~~~~~~~~~d~ 193 (447)
.|++...||.|. .|+.+++.+.. .......+++|.
T Consensus 253 ~f~~~~aEE~Gl-~GS~~~~~~~~~~~~~~~~~viN~Dm 290 (435)
T COG2234 253 RFVAFGAEESGL-LGSEAYVKRLSKDLDKKIALVINLDM 290 (435)
T ss_pred EEEEecchhhcc-cccHHHHhcCCcchhhhhheEEeccc
Confidence 999999999985 79999998754 222334566663
|
|
| >KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00073 Score=71.38 Aligned_cols=82 Identities=24% Similarity=0.295 Sum_probs=63.3
Q ss_pred CCCeEEEEecCCCCCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHH---HHcCC
Q 013216 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL---KASGF 151 (447)
Q Consensus 75 ~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l---~~~~~ 151 (447)
...|++|.++|+.....-|++.+|-|..-.+ +.|...|.+.++...+.+ ++.|+
T Consensus 337 ki~NIig~I~Gs~epD~~ViigahrDSw~~G-----------------------a~dp~sGta~Ll~i~~~~~~~~k~gw 393 (702)
T KOG2195|consen 337 KIQNIIGKIEGSEEPDRYVIIGAHRDSWTFG-----------------------AIDPNSGTALLLEIARALSKLKKRGW 393 (702)
T ss_pred eeeeEEEEEecCcCCCeEEEEeccccccccC-----------------------CcCCCccHHHHHHHHHHHHHHHHcCC
Confidence 3469999999955445789999998885542 555556767666665554 56789
Q ss_pred CCceeEEEEeecCcccCcccCHHHHHccc
Q 013216 152 QPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (447)
Q Consensus 152 ~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (447)
+|+++|+|+...+||-|. .|+-.+++..
T Consensus 394 rP~RtI~F~sWdAeEfGl-iGStE~~E~~ 421 (702)
T KOG2195|consen 394 RPRRTILFASWDAEEFGL-LGSTEWAEEY 421 (702)
T ss_pred CccceEEEEEccchhccc-cccHHHHHHH
Confidence 999999999999999986 6888888754
|
|
| >KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0035 Score=60.94 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=73.0
Q ss_pred CCCeEEEEec-C-----CCCCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHH
Q 013216 75 NKPLILLKWP-G-----SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA 148 (447)
Q Consensus 75 ~~~nl~~~~~-g-----~~~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~ 148 (447)
..+|+.|++. | .+...|+|++.+|+||....|. +--|+.-+..|+.++|..++.+.+
T Consensus 192 ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~-----------------lsvgADSNGSGvvaLLelarlfSk 254 (555)
T KOG2526|consen 192 KILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPG-----------------LSVGADSNGSGVVALLELARLFSK 254 (555)
T ss_pred ccceEEeecccccccccccccCCeEEEEEeccccccCCC-----------------CCCCCCCCCccHHHHHHHHHHHHH
Confidence 3468999886 3 2346899999999999987641 111445555788899999999887
Q ss_pred cC----CCCceeEEEEeecCcccCcccCHHHHHcc--cccc-CCceEEEEec
Q 013216 149 SG----FQPVRSVYLSFVPDEEIGGHDGAEKFADS--HVFN-SLNVGIVLDE 193 (447)
Q Consensus 149 ~~----~~~~~~i~~~~~~~EE~g~~~G~~~~~~~--~~~~-~~~~~~~~d~ 193 (447)
.- -..++|+.|+.+.+.-.. ..|.++.++- ..+. .+|+++|+|.
T Consensus 255 ly~ypsTrakYnLlF~lt~aG~lN-yqGTkkWLe~dd~~lq~nVdfaiCLdt 305 (555)
T KOG2526|consen 255 LYDYPSTRAKYNLLFILTAAGKLN-YQGTKKWLEFDDADLQKNVDFAICLDT 305 (555)
T ss_pred HhcCcccccceeEEEEEccCcccc-ccchhhhhhcchHHHHhcccEEEEhhh
Confidence 42 235789999999876654 4799888872 2333 5789999974
|
|
| >PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.052 Score=50.08 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=57.3
Q ss_pred CeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHc---CCCCceeEEEEeecCccc
Q 013216 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS---GFQPVRSVYLSFVPDEEI 167 (447)
Q Consensus 91 ~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~---~~~~~~~i~~~~~~~EE~ 167 (447)
|.|++.+.||+...-. +- +.|+.+.-.|++++|+++++|.+. ...++++|.|.|..+|--
T Consensus 1 ~iIlv~armDs~s~F~--------------~~---s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~ 63 (234)
T PF05450_consen 1 PIILVVARMDSFSFFH--------------DL---SPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESF 63 (234)
T ss_pred CEEEEEecccchhccc--------------CC---CCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccc
Confidence 5789999999987641 22 358888889999999999999875 235789999999999999
Q ss_pred CcccCHHHHHcc
Q 013216 168 GGHDGAEKFADS 179 (447)
Q Consensus 168 g~~~G~~~~~~~ 179 (447)
|. .|.+.++.+
T Consensus 64 dY-iGS~R~vyD 74 (234)
T PF05450_consen 64 DY-IGSSRFVYD 74 (234)
T ss_pred cc-cchHHHHHH
Confidence 86 688888764
|
Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane |
| >PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.048 Score=52.22 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHHhcCCCCCc-eecCCCcchHHHHHc--CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013216 351 SSNPWWNLLEEAVRKANGKLGKP-EIFPASTDARYFRER--GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 423 (447)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~g~~D~~~~~~~--g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~ 423 (447)
.+..+.+.+.+++++.+.+. +. ....++||+..++.. |+|+..++.... ..|+|.|.++++++...+++
T Consensus 221 ~~~~l~~~l~~~A~~~~Ip~-Q~~~~~~ggTDa~~~~~~~~Gi~t~~i~iP~r---y~Hs~~e~~~~~Di~~~~~L 292 (292)
T PF05343_consen 221 PNPKLVDKLREIAEENGIPY-QREVFSGGGTDAGAIQLSGGGIPTAVISIPCR---YMHSPVEVIDLDDIEATIDL 292 (292)
T ss_dssp SHHHHHHHHHHHHHHTT--E-EEEEESSSSSTHHHHHTSTTSSEEEEEEEEEB---STTSTTEEEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCe-EEEecCCcccHHHHHHHcCCCCCEEEEecccc---cCCCcceEEEHHHHHHHhhC
Confidence 35689999999999988765 33 344689999999865 899887775544 38999999999999988764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A .... |
| >PRK02256 putative aminopeptidase 1; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.23 Score=50.58 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHHhcCCCCCce-e----c-CCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013216 352 SNPWWNLLEEAVRKANGKLGKPE-I----F-PASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 425 (447)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~-~----~-~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~ 425 (447)
+..+...+.+++++.+.+. +.. . . +|+||+-.+++.|+|++-+|.... ..|++.|-+..+|+...++++.
T Consensus 381 ~~~~~~~i~~iA~~~~Ip~-Q~~~~~r~d~~~GgTig~~~s~~Gi~tvdiGiP~l---~MHS~rE~~~~~D~~~~~~ll~ 456 (462)
T PRK02256 381 NAEFVAEVRNLFNKNNVVW-QTAELGKVDQGGGGTIAKFLANYGMEVIDCGVALL---SMHSPFEIASKADIYETYKAYK 456 (462)
T ss_pred CHHHHHHHHHHHHHcCCCE-EEEEeecCCCCCcChHHHHHcCCCCcEEEechhhh---ccccHHHHhhHHHHHHHHHHHH
Confidence 6678888999999887765 332 2 2 579998888878999999987766 4999999999999999999888
Q ss_pred HHHH
Q 013216 426 SIIK 429 (447)
Q Consensus 426 ~~l~ 429 (447)
.++.
T Consensus 457 ~f~~ 460 (462)
T PRK02256 457 AFLE 460 (462)
T ss_pred HHHh
Confidence 7653
|
|
| >COG4882 Predicted aminopeptidase, Iap family [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.72 Score=44.43 Aligned_cols=73 Identities=21% Similarity=0.146 Sum_probs=49.3
Q ss_pred CeEEEEecCCCCCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCcee
Q 013216 77 PLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156 (447)
Q Consensus 77 ~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~ 156 (447)
+|+++.-.+ ....+++.+|+|+=-.+ ..|+-.|++..+.++..|..++ ..
T Consensus 179 y~~Ia~~~~---en~vv~i~AH~DHW~~G-----------------------~tDN~lg~~~AV~~~~~lr~~~----~~ 228 (486)
T COG4882 179 YNVIAVDGG---ENGVVLIGAHLDHWYTG-----------------------FTDNILGVAQAVETAGRLRGRG----LA 228 (486)
T ss_pred EEEEEecCC---CCCceEEeechhhhhhc-----------------------ccchhhhHHHHHHHHHHHhhcC----cc
Confidence 356655322 23689999999985543 3455569999999999988775 35
Q ss_pred EEEEeecCcccCcc--------cCHHHHHcc
Q 013216 157 VYLSFVPDEEIGGH--------DGAEKFADS 179 (447)
Q Consensus 157 i~~~~~~~EE~g~~--------~G~~~~~~~ 179 (447)
+.++..++||.|+. -|++.++++
T Consensus 229 ~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~ 259 (486)
T COG4882 229 AGLVVFTAEEHGMPGMASFYWAAGSRGLLKE 259 (486)
T ss_pred eeEEEEeccccCCCCCcceeecccchHHHhh
Confidence 66777778998752 255666654
|
|
| >cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains | Back alignment and domain information |
|---|
Probab=89.77 E-value=5.9 Score=40.62 Aligned_cols=125 Identities=15% Similarity=0.101 Sum_probs=76.6
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec----CCCCeEEEEecCCCCCCCeEEEeeccccCCCC
Q 013216 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (447)
Q Consensus 30 ~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~----~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~ 105 (447)
.+.+.|+|++-|.-- -.-...++++.+.+++.|++++.++.. .+...+++.=+|+.. .|.++...+...-+
T Consensus 156 ~~~~aRdL~n~P~n~--~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~p~lv~l~Y~g~~~-- 230 (468)
T cd00433 156 GVNLARDLVNTPAND--LTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEE-PPRLIVLEYKGKGA-- 230 (468)
T ss_pred HHHHHHHhhcCCccc--CCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCC-CCEEEEEEECCCCC--
Confidence 456678888888731 344678999999999999999987642 244456666566643 35555444432211
Q ss_pred CCCCCcCCCceeeCCCCcEEecCc---------ccc---hhHHHHHHHHHHHHHHcCCCCceeEEEEeecCccc
Q 013216 106 PSKWSHHPFGAHLDSQGNIFARGS---------QDM---KCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (447)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~---------~D~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (447)
...|....= .|.-|=-|- .+| ++|.|+.+++++++.+.+ ++.+|+.+....|-.
T Consensus 231 ----~~~~i~LVG--KGiTFDsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~--~~vnV~~i~~~~EN~ 296 (468)
T cd00433 231 ----SKKPIALVG--KGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELK--LPVNVVGVLPLAENM 296 (468)
T ss_pred ----CCCcEEEEc--CceEecCCCccccCccChhhccccchhHHHHHHHHHHHHHcC--CCceEEEEEEeeecC
Confidence 011211110 122221111 223 377889999999999986 578999999888864
|
Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants. |
| >PTZ00371 aspartyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.1 Score=45.80 Aligned_cols=80 Identities=13% Similarity=0.146 Sum_probs=61.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCce----ecCCCcchHHHH--HcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013216 350 DSSNPWWNLLEEAVRKANGKLGKPE----IFPASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 423 (447)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~g~~D~~~~~--~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~ 423 (447)
..+..+...+++++++.+.+. +.. ..+||++++.+. +.|+|++-+|.... ..|++.|-+...|+...+++
T Consensus 372 ~td~~~~a~i~~la~~~~Ip~-Q~~~~~~d~~~GsTig~i~~s~~Gi~tvDiGiP~l---~MHS~rE~~~~~D~~~~~~l 447 (465)
T PTZ00371 372 ATNGVTASLLKAIAKKANIPI-QEFVVKNDSPCGSTIGPILSSNLGIRTVDIGIPQL---AMHSIREMCGVVDIYYLVKL 447 (465)
T ss_pred ccCHHHHHHHHHHHHHcCCCE-EEEEecCCCCCcchHHHHHHhCCCCcEEEechhhc---ccccHHHHccHHHHHHHHHH
Confidence 346788889999999987654 221 233577766543 46999999998766 49999999999999999999
Q ss_pred HHHHHHHHHh
Q 013216 424 YESIIKAYAS 433 (447)
Q Consensus 424 ~~~~l~~l~~ 433 (447)
|..++..+..
T Consensus 448 ~~af~~~~~~ 457 (465)
T PTZ00371 448 IKAFFTNYSK 457 (465)
T ss_pred HHHHHHhhhh
Confidence 9988875433
|
|
| >PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.03 E-value=5.9 Score=38.10 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=71.4
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec-----------------CCCCe-EEEEecCCC-CCCC
Q 013216 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA-----------------KNKPL-ILLKWPGSN-PQLP 91 (447)
Q Consensus 31 ~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~-----------------~~~~n-l~~~~~g~~-~~~~ 91 (447)
+.+.|+|++.|.- .-.-...++++++.++++|++++.++.. ...|. ++.++.|.+ ...+
T Consensus 1 vn~aRdL~n~P~n--~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~ 78 (311)
T PF00883_consen 1 VNLARDLVNTPPN--ILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKK 78 (311)
T ss_dssp HHHHHHHHHS-TT--TSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSE
T ss_pred ChHHHhhhCCChh--hcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCc
Confidence 3567889999883 2355688999999999999999877642 01122 334555544 3345
Q ss_pred eEEEeec---cccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCccc
Q 013216 92 SILLNSH---TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (447)
Q Consensus 92 ~ill~~H---~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (447)
+|+|.|- +|+=-.. ++..+.+. +=-.+++|.|+.+.+++++.+.+ ++.+|+.+....|-.
T Consensus 79 ~i~LVGKGiTFDtGG~~------------lKp~~~M~--~Mk~DM~GAAaV~ga~~aia~lk--~~vnV~~~l~~~EN~ 141 (311)
T PF00883_consen 79 PIALVGKGITFDTGGLS------------LKPSGGME--GMKYDMGGAAAVLGAMRAIAKLK--LPVNVVAVLPLAENM 141 (311)
T ss_dssp EEEEEEEEEEEEE-TTS------------SSCSTTGG--GGGGGGHHHHHHHHHHHHHHHCT---SSEEEEEEEEEEE-
T ss_pred cEEEEcceEEEecCCcc------------CCCCcchh--hcccCcchHHHHHHHHHHHHHcC--CCceEEEEEEccccc
Confidence 6666653 2221110 00011111 11334578899999999999976 568999988888754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A .... |
| >PRK02813 putative aminopeptidase 2; Provisional | Back alignment and domain information |
|---|
Probab=87.90 E-value=1.1 Score=45.44 Aligned_cols=75 Identities=9% Similarity=0.093 Sum_probs=57.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCCcee----cCCCcchHHHH--HcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013216 351 SSNPWWNLLEEAVRKANGKLGKPEI----FPASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 424 (447)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~----~~g~~D~~~~~--~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~ 424 (447)
.+......+++++++.+.+. +... ++||+|++.+. +.|+|++-+|.... ..|++.|-+..+|+...++++
T Consensus 346 t~~~~~a~~~~ia~~~~Ip~-Q~~v~~~d~~gGstig~i~~s~~Gi~tvdiGiP~l---~MHS~~E~~~~~D~~~~~~l~ 421 (428)
T PRK02813 346 TDAESAAVFKLLCEKAGVPY-QEFVNRSDMPCGSTIGPITAARLGIRTVDVGAPML---AMHSARELAGVKDHAYLIKAL 421 (428)
T ss_pred cCHHHHHHHHHHHHHcCCCE-EEEEecCCCCCccHHHHHHHhCCCCcEEEeChhhc---ccccHHHHccHHHHHHHHHHH
Confidence 36778888899999887654 2222 23677777554 46999999997766 499999999999999999988
Q ss_pred HHHHH
Q 013216 425 ESIIK 429 (447)
Q Consensus 425 ~~~l~ 429 (447)
..++.
T Consensus 422 ~~f~~ 426 (428)
T PRK02813 422 TAFFS 426 (428)
T ss_pred HHHhc
Confidence 77653
|
|
| >PRK05015 aminopeptidase B; Provisional | Back alignment and domain information |
|---|
Probab=86.48 E-value=14 Score=36.96 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=71.7
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHC---CCceEEEeec----CCCCeEEEEecCCCCCCCeEEEeeccccC
Q 013216 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL---SLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (447)
Q Consensus 30 ~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~---G~~~~~~~~~----~~~~nl~~~~~g~~~~~~~ill~~H~Dtv 102 (447)
.+.+.|+|++-|.-- -.-...++.+.++++++ +++++.++.. .+...+++.=+|+. .|+.++.-+|.
T Consensus 102 ~~~~aRdLvn~P~n~--ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~--~pP~lv~L~Y~-- 175 (424)
T PRK05015 102 IIDWVRDTINAPAEE--LGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSE--RPPVLLALDYN-- 175 (424)
T ss_pred HHHHHHHHhcCCccc--CCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCC--CCCEEEEEEec--
Confidence 466788899888742 23456777777777776 5777766542 24445666656654 24444333332
Q ss_pred CCCCCCCCcCCCc-eeeCCCCcEEecCc-------------ccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccC
Q 013216 103 PSEPSKWSHHPFG-AHLDSQGNIFARGS-------------QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168 (447)
Q Consensus 103 p~~~~~W~~~Pf~-~~~~~~g~l~GrG~-------------~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g 168 (447)
|.++. ..|.. +-+- .|.-|=-|- +|| +|.|+.+.+++.+.+.+ ++.+|++++...|-.-
T Consensus 176 ~~g~~---~~~v~~aLVG-KGITFDSGG~sLKps~~M~~MK~DM-gGAAaV~ga~~~a~~~~--l~~nV~~il~~aENmi 248 (424)
T PRK05015 176 PTGDP---DAPVYACLVG-KGITFDSGGYSIKPSAGMDSMKSDM-GGAATVTGALALAITRG--LNKRVKLFLCCAENLI 248 (424)
T ss_pred CCCCC---CCCeeEEEec-CceEecCCCccCCCCcCHHHhhcch-hHHHHHHHHHHHHHhcC--CCceEEEEEEecccCC
Confidence 33221 11221 1110 122221111 233 56688888888888875 5789999999988643
|
|
| >PRK00913 multifunctional aminopeptidase A; Provisional | Back alignment and domain information |
|---|
Probab=81.61 E-value=21 Score=36.68 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=75.2
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec----CCCCeEEEEecCCCCCCCeEEEeeccccCCCC
Q 013216 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (447)
Q Consensus 30 ~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~----~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~ 105 (447)
.+.+.|+|++.|.-- -.-...++++++.++++|++++.++.. .|...+++.=+|+.. .|.++...+. +..
T Consensus 173 ~~~~aRdL~n~P~n~--~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~prli~l~Y~---g~~ 246 (483)
T PRK00913 173 GVNLARDLVNEPPNI--LTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSAN-PPRLIVLEYK---GGK 246 (483)
T ss_pred HHHHHHHhhCCChhh--cCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCC-CCeEEEEEEC---CCC
Confidence 456678888888731 244578888899999999999877643 244456666566642 3555544432 110
Q ss_pred CCCCCcCCCce-----eeCCCCcEEecC--ccc---chhHHHHHHHHHHHHHHcCCCCceeEEEEeecCccc
Q 013216 106 PSKWSHHPFGA-----HLDSQGNIFARG--SQD---MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (447)
Q Consensus 106 ~~~W~~~Pf~~-----~~~~~g~l~GrG--~~D---~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (447)
.|... ++|.+|.=.-.+ -.+ +++|.|+.+++++++.+.+ ++.+|+.+....|-.
T Consensus 247 ------~~i~LVGKGITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~lk--l~vnV~~v~~l~ENm 310 (483)
T PRK00913 247 ------KPIALVGKGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAELK--LPVNVVGVVAACENM 310 (483)
T ss_pred ------CeEEEEcCceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHcC--CCceEEEEEEeeccC
Confidence 11111 111111100011 022 2377788999999999976 578999999988864
|
|
| >PRK02256 putative aminopeptidase 1; Provisional | Back alignment and domain information |
|---|
Probab=80.14 E-value=3 Score=42.63 Aligned_cols=49 Identities=33% Similarity=0.457 Sum_probs=37.7
Q ss_pred CCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHH
Q 013216 121 QGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (447)
Q Consensus 121 ~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (447)
++.+.|++ -|++.++.+++.++..+. ++...++++++..||.|+ .|+..
T Consensus 251 ~efI~s~r-LDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs-~ga~g 299 (462)
T PRK02256 251 RSLIGAYG-QDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGS-EGNTG 299 (462)
T ss_pred cceeeccc-cccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCC-cchhh
Confidence 55666665 899999999999987653 356789999999999986 45443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 447 | ||||
| 1q7l_A | 198 | Zn-binding Domain Of The T347g Mutant Of Human Amin | 2e-53 | ||
| 1q7l_B | 88 | Zn-binding Domain Of The T347g Mutant Of Human Amin | 7e-19 | ||
| 3ic1_A | 377 | Crystal Structure Of Zinc-Bound Succinyl-Diaminopim | 1e-06 | ||
| 3pfo_A | 433 | Crystal Structure Of A Putative Acetylornithine Dea | 3e-06 | ||
| 1vgy_A | 393 | Crystal Structure Of Succinyl Diaminopimelate Desuc | 5e-06 | ||
| 1lfw_A | 470 | Crystal Structure Of Pepv Length = 470 | 1e-05 | ||
| 3ct9_A | 356 | Crystal Structure Of A Putative Zinc Peptidase (Np_ | 3e-04 | ||
| 4h2k_A | 269 | Crystal Structure Of The Catalytic Domain Of Succin | 6e-04 |
| >pdb|1Q7L|A Chain A, Zn-binding Domain Of The T347g Mutant Of Human Aminoacylase- I Length = 198 | Back alignment and structure |
|
| >pdb|1Q7L|B Chain B, Zn-binding Domain Of The T347g Mutant Of Human Aminoacylase- I Length = 88 | Back alignment and structure |
|
| >pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate Desuccinylase From Haemophilus Influenzae Length = 377 | Back alignment and structure |
|
| >pdb|3PFO|A Chain A, Crystal Structure Of A Putative Acetylornithine Deacetylase (Rpa2325) From Rhodopseudomonas Palustris Cga009 At 1.90 A Resolution Length = 433 | Back alignment and structure |
|
| >pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate Desuccinylase Length = 393 | Back alignment and structure |
|
| >pdb|1LFW|A Chain A, Crystal Structure Of Pepv Length = 470 | Back alignment and structure |
|
| >pdb|3CT9|A Chain A, Crystal Structure Of A Putative Zinc Peptidase (Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.31 A Resolution Length = 356 | Back alignment and structure |
|
| >pdb|4H2K|A Chain A, Crystal Structure Of The Catalytic Domain Of Succinyl-Diaminopimelate Desuccinylase From Haemophilus Influenzae Length = 269 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Length = 198 | Back alignment and structure |
|---|
Score = 253 bits (649), Expect = 2e-83
Identities = 97/196 (49%), Positives = 126/196 (64%)
Query: 21 SSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLIL 80
S + + + FR YL+I T QP PDY A F A L L Q +E A + +
Sbjct: 3 SKGPEEEHPSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTV 62
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
L WPG+NP L SILLNSHTDVVP WSH PF A DS+G I+ARG+QDMKCV +QYL
Sbjct: 63 LTWPGTNPTLSSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYL 122
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE 200
EA+RRLK G + R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+
Sbjct: 123 EAVRRLKVEGHRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTD 182
Query: 201 DYRAFYAERCPWWLVI 216
+ FY+ER PWW+ +
Sbjct: 183 AFTVFYSERSPWWVRV 198
|
| >3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Length = 433 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 1e-41
Identities = 73/426 (17%), Positives = 137/426 (32%), Gaps = 46/426 (10%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP--- 84
+ + + +Q + + +++ Q + T A K
Sbjct: 26 NDQVAFLQRMVQFRS--VRGEEAPQQEWLAQQFADRGYKVDTFSLADVDIASHPKAAPMD 83
Query: 85 --------------GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGS 129
S+ + S++L H DVVP P WS P+ A + G + RG+
Sbjct: 84 TIDPAGSMQVVATADSDGKGRSLILQGHIDVVPEGPVDLWSDPPYEAKVR-DGWMIGRGA 142
Query: 130 QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189
QDMK + A+ ++ +G+ P V++ V +EE G+ GA G
Sbjct: 143 QDMKGGVSAMIFALDAIRTAGYAPDARVHVQTVTEEESTGN-GALSTLMR--------GY 193
Query: 190 VLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD-NSAMENLFKSIESVRRFR 248
D L + A+ W ++ RG P H A SA+ + I + +
Sbjct: 194 RADACLIPEPTGHTLTRAQVGAVWFRLRVRGTPVHVAYSETGTSAILSAMHLIRAFEEYT 253
Query: 249 ASQFD--LVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDA 306
+ + N+ +K G + + + E + +
Sbjct: 254 KELNAQAVRDPWFGQVKNPIKFNVGIIKGGDWA------SSTAAWCELDCRLGLLTGDTP 307
Query: 307 ESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKA 366
+ R I + A A +F L + P + ++L A + A
Sbjct: 308 QEAMRGIEKCLADAQATDSF-LSENPAELVWSGFQADPAVCEPGG--VAEDVLTAAHKAA 364
Query: 367 NGKLGKPEIFPASTDARYF-RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 425
+ A D RY+ + G+PA+ + P H +E ++ K
Sbjct: 365 FNAPLDARLSTAVNDTRYYSVDYGIPALCYGP---YGQGPHAFDERIDLESLRKTTLSIA 421
Query: 426 SIIKAY 431
+ +
Sbjct: 422 LFVAEW 427
|
| >1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 1e-41
Identities = 68/413 (16%), Positives = 133/413 (32%), Gaps = 47/413 (11%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNA-SKFILAQAEALSLESQTLEFAKNK--PLILLKWP 84
++I+ + I+T + + A F+ A+ + L + A I+ K
Sbjct: 19 PAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIK 78
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGM-QYLEAI 143
G ++LL SH D V + + PF ++ + G D K G L +
Sbjct: 79 GRGG--KNLLLMSHMDTVYLKGI-LAKAPF--RVE-GDKAYGPGIADDKG-GNAVILHTL 131
Query: 144 RRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYR 203
+ LK G + ++ + F DEE G G+ + + + + ++ D +
Sbjct: 132 KLLKEYGVRDYGTITVLFNTDEEKGSF-GSRDLIQEEAKLA-DYVLSFE---PTSAGDEK 186
Query: 204 AFYAERCPWWLVIKARGAPGHGAKLYDN--SAMENLFKSIESVRRFRASQFDLVKAGLKA 261
++ + G H + +A+ + +
Sbjct: 187 LSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMN------------IDD 234
Query: 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
+ + + N KAG S N+ P+ A D+R D ++ + + E
Sbjct: 235 KAKNLRFNWTIAKAGNVS------NIIPASATLNADVRYARNEDFDAAMKTLEERAQQKK 288
Query: 322 RNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTD 381
+ GRP A + + ++A G LG E TD
Sbjct: 289 LPEA--------DVKVIVTRGRPAFNAGEGGKKLVDKAVAYYKEAGGTLGVEERTGGGTD 340
Query: 382 ARYFRERGLPAI-GFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433
A Y G P I D E+++ + + + + +I +
Sbjct: 341 AAYAALSGKPVIESLGLPGFGYH--SDKAEYVDISAIPRRLYMAARLIMDLGA 391
|
| >1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Length = 88 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-35
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 353 NPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFL 412
NPWW + N L +PEI PA+ D RY R G+PA+GFSPM TP+LLHDH+E L
Sbjct: 1 NPWWAAFSRVCKDMNLTL-EPEIMPAAGDNRYIRAVGVPALGFSPMNRTPVLLHDHDERL 59
Query: 413 NQAEYLKGIDIYESIIKAYASYVQHSKD 440
++A +L+G+DIY ++ A AS D
Sbjct: 60 HEAVFLRGVDIYTRLLPALASVPALPSD 87
|
| >1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Length = 470 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 2e-34
Identities = 72/470 (15%), Positives = 141/470 (30%), Gaps = 88/470 (18%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE---FAKNKPLILLKWP 84
D+I++ + ID+S+ + T +A++ + F
Sbjct: 14 DAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFANYAGRV 73
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + H DVVP W+ PF +D +G I+ RGS D K + +
Sbjct: 74 NFGAGDKRLGIIGHMDVVP-AGEGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGML 132
Query: 145 RLKASGFQPVRSVYLS-------------------------FVPDEE------------- 166
LK +GF+P + + F PD E
Sbjct: 133 LLKEAGFKPKKKIDFVLGTNEETNWVGIDYYLKHEPTPDIVFSPDAEYPIINGEQGIFTL 192
Query: 167 ---IGGHDGAEKFADSHVFNSLNVGIVLDEGLASTT-----------EDYRAFYAERCPW 212
D + + + A+ + E + A +
Sbjct: 193 EFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYESFLADKELDGSF 252
Query: 213 -----WLVIKARGAPGHGAKLYD-NSAMENLFKSIESV----RRFRASQFDLVKAGLKAE 262
I G H + ++ L ++ R F
Sbjct: 253 EINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFY 312
Query: 263 GEVVSVNMAFLKAGTPSPN-GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
G+ + + G + + +A ++R P TD +++ ++++++++
Sbjct: 313 GKKLGIFHHDDLMGDLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSGI- 371
Query: 322 RNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTD 381
++ + S+P L + K GK G + T
Sbjct: 372 ----LDVTYNGFEEPHY----------VPGSDPMVQTLLKVYEKQTGKPGHEVVIGGGTY 417
Query: 382 ARYFRERGLPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIY-ESIIK 429
R F + F N P+++H NEF+ + + I IY E+I +
Sbjct: 418 GRLFE----RGVAFGAQPENGPMVMHAANEFMMLDDLILSIAIYAEAIYE 463
|
| >2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Length = 364 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 8e-31
Identities = 77/411 (18%), Positives = 143/411 (34%), Gaps = 69/411 (16%)
Query: 28 DSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
I+E ++ + P + + FI+ + ++ ++ +++L G
Sbjct: 6 QHIVELTSDLIRFPSMHSRPEQISRCAGFIMDWCAQNGIHAERMDHDGIPSVMVLPEKGR 65
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEA 142
+LL +H DVV F ++ ++ RG+ D K + + +
Sbjct: 66 ----AGLLLMAHIDVVD-----AEDDLFVPRVE-NDRLYGRGANDDKYAVALGLVMFRDR 115
Query: 143 IRRLKASGFQPVR-SVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
+ LKA+G ++ L DEEIGG +GA K + + +G
Sbjct: 116 LNALKAAGRSQKDMALGLLITGDEEIGGMNGAAKALPLIRADYVVAL----DG----GNP 167
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAK--LYDNSAMENLFKSIESVRRFRA-SQFDLVKAG 258
+ E+ + + G HGA+ + N A++ L + ++ A D
Sbjct: 168 QQVITKEKGIIDIKLTCTGKAAHGARPWMGVN-AVDLLMEDYTRLKTLFAEENEDHWHR- 225
Query: 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318
+VN+ ++AG N P AE F+IRV D +L +I + +
Sbjct: 226 --------TVNLGRIRAGE------STNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVS 271
Query: 319 PASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPA 378
++ P+ A DS P+ L GK
Sbjct: 272 ----------------GTVSIVRTVPVFLAADS--PYTERLLALSGATAGKAH------G 307
Query: 379 STDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIK 429
++DARY E GL + + + H +E L+ D + +
Sbjct: 308 ASDARYLGENGLTGVVWGAEGFNTL--HSRDECLHIPSLQSIYDPLMQLAR 356
|
| >3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Length = 492 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 5e-30
Identities = 75/474 (15%), Positives = 136/474 (28%), Gaps = 92/474 (19%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE---FAKNKPLILLKWP 84
D II + L I++ + + + + +AL + F + +
Sbjct: 34 DQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRI 93
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + + H DVVP W +PF + + I ARG+ D K + AI+
Sbjct: 94 EAGKGNDVLGILCHVDVVP-AGDGWDSNPFEPVVT-EDAIIARGTLDDKGPTIAAYYAIK 151
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDG------------------------AEK----- 175
L+ + +++ DEE EK
Sbjct: 152 ILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTF 211
Query: 176 ------------------------FADSHVFNSLNVGIVLDEGLASTTEDYRAFYA---- 207
+ V + +++ E + +D+ F
Sbjct: 212 DLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHL 271
Query: 208 ----ERCPWWLVIKARGAPGHGAKLYD-NSAMENLFKSIESVR----RFRASQFDLVKAG 258
LV+ G HG +A L K + S+ F
Sbjct: 272 QGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLF 331
Query: 259 LKAEGEVVSVNMAFLKAGTPSPN-GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317
GE + + G + N G + + G ++R P + E R E
Sbjct: 332 NSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEI 391
Query: 318 APASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFP 377
+LG+ P + P+ L A R + +P
Sbjct: 392 QQY--GFEVKLGK----------VQPPHYVDKND--PFVQKLVTAYRNQTNDMTEPYTIG 437
Query: 378 ASTDARYFRERGLPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIY-ESIIK 429
T AR + F +++ L+H NE++ + + IY E+I
Sbjct: 438 GGTYARNLD----KGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYS 487
|
| >2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Length = 369 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 9e-28
Identities = 73/420 (17%), Positives = 113/420 (26%), Gaps = 78/420 (18%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS-LESQTLEFAKNKPLILLKWPGS 86
S +E + DT P L + + ++ +
Sbjct: 9 ASTLEHLETLVSFDTRNPPRAIAAEGGIFDYLRAQLPGFQVEVIDHGDGAVSLYAVRGT- 67
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEA 142
P L N H D VP P WS P + + G D+K + + A
Sbjct: 68 ----PKYLFNVHLDTVPDSP-HWSADPHVMRRT-EDRVIGLGVCDIKGAAAAL----VAA 117
Query: 143 IRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE-- 200
F DEE F L E
Sbjct: 118 ANAGD-------GDAAFLFSSDEEANDPRCIAAFLARG----------LPYDAVLVAEPT 160
Query: 201 DYRAFYAERCPWWLVIKARGAPGHGAKLYD--NSAMENLFKSIESVRRFRASQFDLVKAG 258
A A R ++++ G GH + D SA+ + + L A
Sbjct: 161 MSEAVLAHRGISSVLMRFAGRAGHASGKQDPAASALHQA---MRWGGKALDHVESLAHA- 216
Query: 259 LKAEGEV--VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEE 316
G + + N+ + G N+ AE F R P+ D + L
Sbjct: 217 --RFGGLTGLRFNIGRVDGGI------KANMIAPAAELRFGFRPLPSMDVDGLLATFAGF 268
Query: 317 WAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKP--E 374
PA+ + + F P L + D A R L P
Sbjct: 269 ADPAAAHFE-------------ETFRGPSLPSGDI--ARAEERRLAARDVADALDLPIGN 313
Query: 375 IFPASTDARYFRERGLPAIGFSP----MANTPILLHDHNEFLNQAEYLKGIDIYESIIKA 430
T+A F G A+ + P A H +EF+ A+ + ++ II
Sbjct: 314 AVDFWTEASLFSAGGYTALVYGPGDIAQA------HTADEFVTLAQLQRYVESVNRIING 367
|
| >3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Length = 356 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 72/377 (19%), Positives = 131/377 (34%), Gaps = 73/377 (19%)
Query: 65 LESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNI 124
+E++ ++ + + P + + P+ILLNSH D V + W PF + G +
Sbjct: 41 IEAEGMQTGRKGNNVWCLSPMFDLKKPTILLNSHIDTVKPV-NGWRKDPFTPREE-NGKL 98
Query: 125 FARGSQDMK----CVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
+ GS D + L+ +L + ++ +EE+ G +G E
Sbjct: 99 YGLGSNDAGASVVSL----LQVFLQLCRTSQN--YNLIYLASCEEEVSGKEGIESVLPGL 152
Query: 181 VFNSLNVGIVLDEGLASTTE--DYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLF 238
++ IV E + + AE+ L + A G GH A+ ++A+ +
Sbjct: 153 P--PVSFAIVG--------EPTEMQPAIAEKGLMVLDVTATGKAGHAARDEGDNAIYKVL 202
Query: 239 KSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298
I R +R + G V +++ + AGT N V+ P + DI
Sbjct: 203 NDIAWFRDYRFEKES------PLLGPV-KMSVTVINAGT-QHN--VV---PDKCTFVVDI 249
Query: 299 RVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNL 358
R E L I + A ++ +F L + D +P+
Sbjct: 250 RSNELYSNEDLFAEIRKHIACDAKARSFRLN----------------SSRIDEKHPF--- 290
Query: 359 LEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSP----MANTPILLHDHNEFLNQ 414
V+KA P P +D ++ P + H E++
Sbjct: 291 ----VQKAVKMGRIPFGSPTLSDQALM---SFASVKIGPGRSSRS------HTAEEYIML 337
Query: 415 AEYLKGIDIYESIIKAY 431
E + I IY ++
Sbjct: 338 KEIEEAIGIYLDLLDGL 354
|
| >3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Length = 369 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 8e-23
Identities = 60/357 (16%), Positives = 102/357 (28%), Gaps = 76/357 (21%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRRL 146
++L H D VP + ++ G ++ G+ DMK L L
Sbjct: 70 SRVMLAGHIDTVPIAD------NLPSRVE-DGIMYGCGTVDMKSGLAVY----LHTFATL 118
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE--DYRA 204
S + + L EE+ H H+ + + D LA E
Sbjct: 119 ATST-ELKHDLTLIAYECEEVADHLNGLG----HIRDEHPEWLAAD--LALLGEPTGGWI 171
Query: 205 FYAERCPWWLVIKARGAPGHGAK--LYDNSAMENLFKSIESVRRFRASQ----FDLVKAG 258
+ + + A G H A+ L DN AM L I V ++A++ + G
Sbjct: 172 EAGCQGNLRIKVTAHGVRAHSARSWLGDN-AMHKLSPIISKVAAYKAAEVNIDGLTYREG 230
Query: 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318
L +V +G + N+ P A + R P D +VE
Sbjct: 231 L----NIVFCE-----SGVAN------NVIPDLAWMNLNFRFAPNRDLNEAIEHVVETLE 275
Query: 319 PASR-NMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEI-F 376
+ + + + + + A G +
Sbjct: 276 LDGQDGIEWAVE------------DGAGGALPGLGQQ----VTSGLIDAVG--REKIRAK 317
Query: 377 PASTDARYFRERGLPAIGFSP----MANTPILLHDHNEFLNQAEYLKGIDIYESIIK 429
TD F G+PA+ F A H +E + I + +
Sbjct: 318 FGWTDVSRFSAMGIPALNFGAGDPSFA------HKRDEQCPVEQITDVAAILKQYLS 368
|
| >3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Length = 396 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 68/428 (15%), Positives = 138/428 (32%), Gaps = 82/428 (19%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPL----ILLKW 83
++ F +QID+ + + + + AL L+ + E AK+ L ++
Sbjct: 24 QRLLNTFLELVQIDS--ETGNESTIQPILKEKFIALGLDVKEDEAAKHPKLGANNLVCTM 81
Query: 84 PGSNPQ--LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQ----DMKCVGM 137
+ + +P + L SH D V + P + G I++ G+ D K
Sbjct: 82 NSTIEEGEVPKLYLTSHMDTVVPA---INVKPI---VKDDGYIYSDGTTILGADDKAGLA 135
Query: 138 QYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLD-EGLA 196
LE ++ +K P + EE G GA++ +S + ++ + G +D
Sbjct: 136 AMLEVLQVIKEQQI-PHGQIQFVITVGEESGLI-GAKEL-NSELLDA-DFGYAIDASADV 191
Query: 197 STTEDYRAFYAERCPWWLVIKARGAPGH-GAKLYDNSAMENLFKSIESVRRFRASQFDLV 255
TT A + K G H SA+ K+I ++ +
Sbjct: 192 GTTV-VGAPTQ----MLISAKIIGKTAHASTPKEGVSAINIAAKAISRMKLGQVD----- 241
Query: 256 KAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERR--- 312
E+ + N+ G+ + N+ E + R + D E ++ +
Sbjct: 242 --------EITTANIGKFHGGSAT------NIVADEVILEAEAR---SHDPERIKTQVKH 284
Query: 313 ---IVEEWAPASRNMTFELGQFKQRASLHDKFG-RPILTATDSSNPWWNLLEEAVRKANG 368
+ E A + +A + + + + + + +++
Sbjct: 285 MTDVFETTA----------SELGGKAEVTVEQSYPGFKINDNEA------VVKIAQESAR 328
Query: 369 KLG-KPEIFPAS--TDARYFRERGLPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIY 424
LG + +D G+P++ +H NE +
Sbjct: 329 NLGLSANTIISGGGSDGSIINTFGIPSVILGVGYEK----IHTTNERMPIKSLNLLASQV 384
Query: 425 ESIIKAYA 432
IIK A
Sbjct: 385 LEIIKIVA 392
|
| >3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Length = 377 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 7e-19
Identities = 65/367 (17%), Positives = 126/367 (34%), Gaps = 78/367 (21%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRR 145
P I HTDVVP+ + ++WS PF A + G ++ RG+ DMK + A
Sbjct: 60 PVIAFAGHTDVVPTGDENQWSSPPFSAEII-DGMLYGRGAADMKGSLAA----MIVAAEE 114
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAS--TTEDY- 202
+ ++ L DEE DG ++ + + + ++
Sbjct: 115 YVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMAR----DEKITYCMVGEPSSAKNL 170
Query: 203 --RAFYAERCPWWLVIKARGAPGHGA--KLYDN--SAMENLFKSIESVR------RFRAS 250
R + +G GH A L +N + + + + F +
Sbjct: 171 GDVVKNGRRGSITGNLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDKGNEFFPPT 230
Query: 251 QFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLE 310
++ +++ AGT N+ P+E F++R E ++
Sbjct: 231 SL-----------QIANIH-----AGTG-----SNNVIPAELYIQFNLRYCTEVTDEIIK 269
Query: 311 RRIVEEWAPASRNMTFELGQFKQRASLHDKF-GRPILTATDSSNPWWNLLEEAVRKANGK 369
+++ E L + + + G+P LT + + A+ + G
Sbjct: 270 QKVAE-----------MLEKHNLKYRIEWNLSGKPFLTK---PGKLLDSITSAIEETIGI 315
Query: 370 LGKPEIFPAST-----DARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 424
P+ T D R+ G + F P+ +T +H NE ++ + K +IY
Sbjct: 316 --TPKA---ETGGGTSDGRFIALMGAEVVEFGPLNST---IHKVNECVSVEDLGKCGEIY 367
Query: 425 ESIIKAY 431
++
Sbjct: 368 HKMLVNL 374
|
| >1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Length = 393 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 75/364 (20%), Positives = 123/364 (33%), Gaps = 72/364 (19%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRR 145
P + HTDVVP+ KW PF G ++ RG+ DMK C ++ A R
Sbjct: 63 PVVCFAGHTDVVPTGPVEKWDSPPFEPAER-DGRLYGRGAADMKTSIAC----FVTACER 117
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG-IVLDE--GLASTTEDY 202
A S+ L DEE DG K D + ++ E + +
Sbjct: 118 FVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMI 177
Query: 203 RAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAE 262
+ L +K G GH A Y + A+ + ++ +D E
Sbjct: 178 KNGRRGSLSGNLTVK--GKQGHIA--YPHLAINPVHTFAPALLELTQEVWD--------E 225
Query: 263 G---------EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRI 313
G ++ ++N GT N+ P E F+ R + L++R+
Sbjct: 226 GNEYFPPTSFQISNIN-----GGTG-----ATNVIPGELNVKFNFRFSTESTEAGLKQRV 275
Query: 314 VEEWAPASRNMTFELGQFKQRASLHDKF-GRPILTATDSSNPWWNLLEEAVRKANGKLGK 372
L + + L G+P LT + ++ A+ + G +
Sbjct: 276 HA-----------ILDKHGVQYDLQWSCSGQPFLTQ---AGKLTDVARAAIAETCGI--E 319
Query: 373 PEIFPAST-----DARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESI 427
E+ ST D R+ + I P T +H NE + + K +YE I
Sbjct: 320 AEL---STTGGTSDGRFIKAMAQELIELGPSNAT---IHQINENVRLNDIPKLSAVYEGI 373
Query: 428 IKAY 431
+
Sbjct: 374 LVRL 377
|
| >3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Length = 373 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 65/424 (15%), Positives = 125/424 (29%), Gaps = 76/424 (17%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK----NKPLILLKW 83
+ ++ F +Q+D+ + + K + + L +E + ++
Sbjct: 6 ERLVNEFMELVQVDS-ETKFEAEIC-KVLTKKFTDLGVEVFEDDTMAVTGHGAGNLICTL 63
Query: 84 PGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQY 139
P + + +I SH D V P G I + G+ D K
Sbjct: 64 PATKDGVDTIYFTSHMDTVV--PGNGIKPSIK-----DGYIVSDGTTILGADDKAGLASM 116
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLD-EGLAST 198
EAIR LK P ++ EE G GA+ D + G LD +G
Sbjct: 117 FEAIRVLKEKNI-PHGTIEFIITVGEESGLV-GAKAL-DRERITA-KYGYALDSDGKVGE 172
Query: 199 TEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMEN-LFKSIESVRRFRASQFDLVKA 257
A + RG H + + + + +++ + + D
Sbjct: 173 IV-VAAPTQ----AKVNAIIRGKTAHAGVAPEK--GVSAITIAAKAIAKMPLGRID---- 221
Query: 258 GLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERR----- 312
+ N+ + GT N+ + + R E +E +
Sbjct: 222 ------SETTANIGRFEGGTQ------TNIVCDHVQIFAEARS---LINEKMEAQVAKMK 266
Query: 313 -IVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLG 371
E A ++ G ++ + + A K
Sbjct: 267 EAFETTA-KEMGGHADVEVNVMYPGFKFADGDHVV----------EVAKRAAEKIG---R 312
Query: 372 KPEIFPAS--TDARYFRERGLPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIYESII 428
P + + +DA G+P + + +H NE + E K ++ +II
Sbjct: 313 TPSLHQSGGGSDANVIAGHGIPTVNLAVGYEE----IHTTNEKIPVEELAKTAELVVAII 368
Query: 429 KAYA 432
+ A
Sbjct: 369 EEVA 372
|
| >3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 1e-15
Identities = 76/452 (16%), Positives = 141/452 (31%), Gaps = 94/452 (20%)
Query: 28 DSIIERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFAK----NKPLILLK 82
+ +IERF Y++IDT S + + + + L E + + + + ++
Sbjct: 27 EELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTMDDNGYVMAT 86
Query: 83 WPGSNP-QLPSILLNSHTDVVPSEPSK--------------------------WSHHPFG 115
P + +P I +H D K P
Sbjct: 87 LPANTDKDVPVIGFLAHLDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPEL 146
Query: 116 AHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD 171
I G+ D K + + A+ L + + ++F PDEEIG
Sbjct: 147 PSYKGHTIITTDGTTLLGADDKAGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEEIGR-- 204
Query: 172 GAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGH--GAKLY 229
G F D F + + ++D G E Y +F A + G H AK
Sbjct: 205 GPAHF-DVEAFGA-SFAYMMDGGPLGGLE-YESFNAAGA----KLTFNGTNTHPGTAKNK 257
Query: 230 DNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289
+A + + + A ++ G + +N
Sbjct: 258 MRNATKLAMEFNGHLPVEEAPEYTEGYEGF--------------------YHLLSLNGDV 297
Query: 290 SEAEAGFDIRVPPTTDAESLERR------IVEEWAPASRNMTFELGQFKQRASLHDKFGR 343
+++A + IR D ++ E R IV++ L ++D++
Sbjct: 298 EQSKAYYIIR---DFDRKNFEARKNTIENIVKQMQEKYGQDAVVL-------EMNDQY-Y 346
Query: 344 PILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPA--STDARYFRERGLPAIGFSP-MAN 400
+L + ++ EA++ N +P I P TD GLP N
Sbjct: 347 NMLEKIEPVREIVDIAYEAMKSLN---IEPNIHPIRGGTDGSQLSYMGLPTPNIFTGGEN 403
Query: 401 TPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432
H E+++ K + + I + +
Sbjct: 404 ----YHGKFEYVSVDVMEKAVQVIIEIARRFE 431
|
| >1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Length = 417 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 4e-15
Identities = 88/457 (19%), Positives = 137/457 (29%), Gaps = 97/457 (21%)
Query: 28 DSIIERFRAYLQIDT-SQPNPDYT-------NASKFILAQAEALSLESQTLEFAKNKPLI 79
D ++ERF Y+ +DT S+ + + Q E + L + TL +
Sbjct: 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSEKGT---L 58
Query: 80 LLKWPGSNP-QLPSILLNSHTDVVPSEPSK-------------------------WSHHP 113
+ P + +P+I SH D P K P
Sbjct: 59 MATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFP 118
Query: 114 FGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG 169
L Q I G D K + + A+ LK + P + ++F PDEE+G
Sbjct: 119 VLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNPI-PHGDIKVAFTPDEEVGK 177
Query: 170 HDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLY 229
GA+ F D F + +D G E + F A + IK G H
Sbjct: 178 --GAKHF-DVEAFGA-QWAYTVDGGGVGELE-FENFNA----ASVNIKIVGNNVHPG--- 225
Query: 230 DNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289
+A + ++ R A V A E F + M
Sbjct: 226 --TAKGVMVNALSLAARIHA----EVPADEAPET--TEGYEGFYHLAS-------MKGTV 270
Query: 290 SEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTAT 349
AE + IR E+ +R+++E K+ L
Sbjct: 271 DRAEMHYIIRDFDRKQFEARKRKMME--------------IAKKVGKGLHPDCYIELVIE 316
Query: 350 DSSNPWWNLLE------EAVRKANGKLG-KPEIFPAS--TDARYFRERGLPAIGFSP-MA 399
DS + + ++A PE+ P TD GLP
Sbjct: 317 DSYYNMREKVVEHPHILDIAQQAMRDCHITPEMKPIRGGTDGAQLSFMGLPCPNLFTGGY 376
Query: 400 NTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQ 436
N H +EF+ K + + I + A Q
Sbjct: 377 N----YHGKHEFVTLEGMEKAVQVIVRIAELTAKRGQ 409
|
| >2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Length = 481 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 10/146 (6%)
Query: 28 DSIIERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
E R + + + ++ + + E + E P ++ + S
Sbjct: 44 QHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESYTA-PFVMAHFKSS 102
Query: 87 NPQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
P +++ +H D VP++ + W+ PF + G ++ RG D K L A+R+
Sbjct: 103 RPDAKTLIFYNHYDTVPADGDQVWTEDPFTLSVR-NGFMYGRGVDDDKGHITARLSALRK 161
Query: 146 LKASGFQ-PVRSVYLSFVPD--EEIG 168
PV +SF+ + EE
Sbjct: 162 YMQHHDDLPVN---ISFIMEGAEESA 184
|
| >2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Length = 481 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 24/150 (16%)
Query: 289 PSEAEAGFDIRVPPTTDAESLERRI---VEEWAPASRNMTFELGQFKQRASLHDKFGRPI 345
P+EA A ++R+ P + + +I +++ + + LG
Sbjct: 348 PAEASAKLEVRLVPGLEPHDVLEKIRKQLDKNGFDKVELYYTLG------------EMSY 395
Query: 346 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAS----TDARYFRERGLPAIGFSPMANT 401
+ + P + E +K + + P + F +P + F + N
Sbjct: 396 RSDMSA--PAILNVIELAKKFYPQ--GVSVLPTTAGTGPMHTVFDALEVPMVAF-GLGNA 450
Query: 402 PILLHDHNEFLNQAEYLKGIDIYESIIKAY 431
H +E + A+Y I++ E +I++Y
Sbjct: 451 NSRDHGGDENVRIADYYTHIELVEELIRSY 480
|
| >3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Length = 472 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS---LESQTLEFAKNK------- 76
+ I+ Y++I P+ D + QA +S + +
Sbjct: 17 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNR 76
Query: 77 -PLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKC 134
PL+ ++ PG ++LL H D P HP+ L G ++ RG D
Sbjct: 77 TPLLFMEIPG--QIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLK-NGLLYGRGGADDGY 133
Query: 135 VGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
L AIR L+ G R + + EE G + +
Sbjct: 134 SAYASLTAIRALEQQGLPYPRCILI-IEACEESGS-YDLPFYIELL 177
|
| >3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Length = 472 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 29/173 (16%), Positives = 52/173 (30%), Gaps = 38/173 (21%)
Query: 276 GTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLE---RRIVEEWAPASRNMTFELGQFK 332
G P+ N+ +R+PP D E+ + + + P + + F++
Sbjct: 319 GFPAIADAG-NVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKI---- 373
Query: 333 QRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERG-LP 391
G A S+ EA K A Y E G +P
Sbjct: 374 ------QNGGSKGWNAPLLSDWLAKAASEASMTYYDK-----------PAAYMGEGGTIP 416
Query: 392 AIGF-------SPMANTPILLHD---H--NEFLNQAEYLKGIDIYESIIKAYA 432
+ + T +L H NEFL+ K ++ +++
Sbjct: 417 FMSMLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFS 469
|
| >3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Length = 268 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS 149
P + HTDVVP+ S+W PF + G + RG+ DMK + A+ R A
Sbjct: 63 PLFVFAGHTDVVPAGPLSQWHTPPFEPTVI-DGFLHGRGAADMKGSLACMIVAVERFIAE 121
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEK 175
S+ DEE +G +
Sbjct: 122 HPDHQGSIGFLITSDEEGPFINGTVR 147
|
| >3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Length = 485 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 24/172 (13%)
Query: 28 DSIIERFRAYLQIDT--SQPNPDYTN----ASKFILAQAEALSLESQTLEFAKNKPLILL 81
D ++ + ++ I++ QP P + + L +++ +
Sbjct: 25 DEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQ 84
Query: 82 KWPG---------SNPQLPSILLNSHTDVVPSEPS-KWSHHPFGAHLDSQGNIFARGSQD 131
P S+P ++ H DV P++ W P+ G ++ RG+ D
Sbjct: 85 SLPIPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEV-DGKLYGRGATD 143
Query: 132 MKCVGMQYLEAIRRLKASGFQ-PVRSVYLSFVPD--EEIGGHDGAEKFADSH 180
K + ++ A+ +A PV + F+ + EE G E+ +
Sbjct: 144 NKGPVLAWINAVSAFRALEQDLPVN---IKFIIEGMEEAGS-VALEELVEKE 191
|
| >3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Length = 485 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 21/152 (13%)
Query: 289 PSEAEAGFDIRVPPTTDAESLERRI---VEEWAPASR---NMTFELGQFKQRASLHDKFG 342
P F IR+ P + ++E+++ +E+ M +
Sbjct: 344 PGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMT--------LG--L 393
Query: 343 RPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAS-TDARYFRER-GLPAIGFSPMAN 400
P + + + + + A+R G ++ A+ F+E + P+
Sbjct: 394 HPWI--ANIDDTQYLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQEIVHKSVVLI-PLGA 450
Query: 401 TPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432
H NE +N+ Y++G ++ + A
Sbjct: 451 VDDGEHSQNEKINRWNYIEGTKLFAAFFLEMA 482
|
| >2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Length = 479 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 22/170 (12%)
Query: 28 DSIIERFRAYLQIDT--SQP--NPDYTNASKFILAQAEALSLESQTLEFAKNK------- 76
D +++ ++ I + + P + + A + L + ++ K K
Sbjct: 20 DRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEI 79
Query: 77 --PLILLKWPGSNPQLPSILLNSHTDVVPSEPS-KWSHHPFGAHLDSQGNIFARGSQDMK 133
P ILL GS+PQ ++ + H DV P+ W PF +G ++ RGS D K
Sbjct: 80 PLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVER-EGKLYGRGSTDDK 138
Query: 134 CVGMQYLEAIRRLKASGFQ-PVRSVYLSFVPD--EEIGGHDGAEKFADSH 180
++ A+ + +G + PV L F + EE G +G ++ +
Sbjct: 139 GPVAGWMNALEAYQKTGQEIPVN---LRFCLEGMEESGS-EGLDELIFAQ 184
|
| >2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Length = 479 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 21/152 (13%)
Query: 289 PSEAEAGFDIRVPPTTDAESLERRIVE------EWAPASRNMTFELGQFKQRASLHDKFG 342
P + F IR+ P E + ++ + +G H G
Sbjct: 337 PRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMG--------HG--G 386
Query: 343 RPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST-DARYFRER-GLPAIGFSPMAN 400
+P + +D ++P + A++ G S F+E G + P+ +
Sbjct: 387 KPWV--SDFNHPHYQAGRRALKTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLL-PVGS 443
Query: 401 TPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432
H NE LN+ Y++G + + + +
Sbjct: 444 ADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVS 475
|
| >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Length = 299 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 27/172 (15%)
Query: 32 ERFRAYLQIDTSQPN-----PDYTNASKFILAQAEALSLESQTLEFAKNKPL------IL 80
+ + S N AS +I ++ +ALS + ++
Sbjct: 20 SQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVV 79
Query: 81 LKWPGSNPQLPSILLNSHTD-VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQY 139
+ GS I++ H D + S ++ S P GA D+ G +
Sbjct: 80 MTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAP-GADDDASG-----------IAAV-- 125
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVL 191
E IR L + FQP RS+ EE G G++ A+ + NV L
Sbjct: 126 TEVIRVLSENNFQPKRSIAFMAYAAEE-VGLRGSQDLANQYKSEGKNVVSAL 176
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 66/532 (12%), Positives = 142/532 (26%), Gaps = 180/532 (33%)
Query: 12 FVFYQLIIFSSPAKSDDSIIERFRAYLQIDTS----QPNPDYT-----NASKFILAQAEA 62
++ + +++ + R + YL++ + +P + + K +A +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-LDV 170
Query: 63 LSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQG 122
+ + LK S + +L + P + + D
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP---------NWTSRSDHSS 221
Query: 123 NIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS-VYLSFVPDEEIGGHDGAEKFA---- 177
NI R ++ +RRL S + L V + + F
Sbjct: 222 NIKLR-IHSIQ-------AELRRLLKSKPYE-NCLLVLLNVQNAKA-----WNAFNLSCK 267
Query: 178 ------DSHVFNSLNVG----IVLDEGLASTTEDY-RAFYAERCPWWLVIKARGAP---- 222
V + L+ I LD + T D ++ + +L + + P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVL 323
Query: 223 -GH-------GAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLK 274
+ + D A + ++ D + +++ S+N
Sbjct: 324 TTNPRRLSIIAESIRDGLATWD---------NWKHVNCDKLTTIIES-----SLN----- 364
Query: 275 AGTPSPNGFVMNLQPSEAEAGF--------DIRVPPTT---------------DAESLER 311
L+P+E F +P L +
Sbjct: 365 -----------VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 312 R-IVEEWAPASR----NMTFEL-GQFKQRASLHDKFGRPILTA---------TDSSNPWW 356
+VE+ S ++ EL + + +LH I+ D P+
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRS----IVDHYNIPKTFDSDDLIPPYL 469
Query: 357 -----------------------------NL--LEEAVRKANGKLGKP-EIFPASTDARY 384
+ LE+ +R + I ++
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 385 FR----------ERGLPAIG-FSPMANTPILLHDHNEFLNQAEYLKGIDIYE 425
++ ER + AI F P ++ + + L A + I+E
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
|
| >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Length = 284 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 32/118 (27%)
Query: 114 FGAHLDSQG-------NIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166
GAHLDS N GS + LE + +G+QP + + ++ EE
Sbjct: 82 AGAHLDSVSSGAGINDN--GSGS-----AAV--LETALAVSRAGYQPDKHLRFAWWGAEE 132
Query: 167 IGGHDGAEKFADSH----------VFN-----SLNVGIVLDEGLASTTEDYRAFYAER 209
+G G++ + ++ N S N G + + + ++ ++A
Sbjct: 133 LGLI-GSKFYVNNLPSADRSKLAGYLNFDMIGSPNPGYFVYDDDPVIEKTFKNYFAGL 189
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| 3pfo_A | 433 | Putative acetylornithine deacetylase; metal bindin | 100.0 | |
| 1vgy_A | 393 | Succinyl-diaminopimelate desuccinylase; structural | 100.0 | |
| 3isz_A | 377 | Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b | 100.0 | |
| 2f7v_A | 369 | Aectylcitrulline deacetylase; alpha/beta, hydrolas | 100.0 | |
| 3pfe_A | 472 | Succinyl-diaminopimelate desuccinylase; metal bind | 100.0 | |
| 3ct9_A | 356 | Acetylornithine deacetylase; NP_812461.1, A putati | 100.0 | |
| 1cg2_A | 393 | Carboxypeptidase G2; metallocarboxypeptidase, hydr | 100.0 | |
| 2pok_A | 481 | Peptidase, M20/M25/M40 family; M20 family peptidas | 100.0 | |
| 3dlj_A | 485 | Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti | 100.0 | |
| 3gb0_A | 373 | Peptidase T; NP_980509.1, aminopeptidase PEPT, pep | 100.0 | |
| 3rza_A | 396 | Tripeptidase; phosphorylase/hydrolase-like, struct | 100.0 | |
| 2zog_A | 479 | Cytosolic non-specific dipeptidase; metallopeptida | 100.0 | |
| 3tx8_A | 369 | Succinyl-diaminopimelate desuccinylase; peptidase, | 100.0 | |
| 2rb7_A | 364 | Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat | 100.0 | |
| 1xmb_A | 418 | IAA-amino acid hydrolase homolog 2; structural gen | 100.0 | |
| 3ife_A | 434 | Peptidase T; metallopeptidase, aminopeptidase, hyd | 100.0 | |
| 1ysj_A | 404 | Protein YXEP; M20 family peptidase, dinuclear meta | 100.0 | |
| 3io1_A | 445 | Aminobenzoyl-glutamate utilization protein; peptid | 100.0 | |
| 3khx_A | 492 | Putative dipeptidase sacol1801; DAPE, metallopepti | 100.0 | |
| 1fno_A | 417 | Peptidase T; metallo peptidase, protease, hydrolas | 100.0 | |
| 2qyv_A | 487 | XAA-His dipeptidase; YP_718209.1, structural genom | 100.0 | |
| 3mru_A | 490 | Aminoacyl-histidine dipeptidase; metalloprotease, | 100.0 | |
| 1lfw_A | 470 | PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac | 100.0 | |
| 3ram_A | 394 | HMRA protein; two-domain, catalytic (alpha-beta-al | 100.0 | |
| 3n5f_A | 408 | L-carbamoylase, N-carbamoyl-L-amino acid hydrolase | 100.0 | |
| 2v8h_A | 474 | Beta-alanine synthase; amidohydrolase, alpha and b | 100.0 | |
| 1z2l_A | 423 | Allantoate amidohydrolase; ALLC, purine cataboli a | 100.0 | |
| 3t68_A | 268 | Succinyl-diaminopimelate desuccinylase; DAPE, csgi | 100.0 | |
| 4h2k_A | 269 | Succinyl-diaminopimelate desuccinylase; DAPE, MCSG | 100.0 | |
| 1q7l_A | 198 | Aminoacylase-1; catalysis, enzyme dimerization, si | 100.0 | |
| 2fvg_A | 340 | Endoglucanase; TM1049, structural genomics, joint | 99.95 | |
| 2wyr_A | 332 | Cobalt-activated peptidase TET1; hydrolase, large | 99.93 | |
| 1vhe_A | 373 | Aminopeptidase/glucanase homolog; structural genom | 99.92 | |
| 2wzn_A | 354 | TET3, 354AA long hypothetical operon protein FRV; | 99.91 | |
| 2gre_A | 349 | Deblocking aminopeptidase; structural genomi prote | 99.9 | |
| 1y0y_A | 353 | FRV operon protein FRVX; aminopeptidase, PDZ, hydr | 99.89 | |
| 1vho_A | 346 | Endoglucanase; structural genomics, unknown functi | 99.87 | |
| 3cpx_A | 321 | Aminopeptidase, M42 family; YP_676701.1, putative | 99.86 | |
| 1ylo_A | 348 | Hypothetical protein SF2450; structural genomics, | 99.85 | |
| 1rtq_A | 299 | Bacterial leucyl aminopeptidase; bimetallic, zinc, | 99.8 | |
| 1tkj_A | 284 | Aminopeptidase, SGAP; double-zinc metalloproteinas | 99.8 | |
| 3tc8_A | 309 | Leucine aminopeptidase; phosphorylase/hydrolase-li | 99.76 | |
| 3gux_A | 314 | Putative Zn-dependent exopeptidase; aminopeptidase | 99.74 | |
| 3kl9_A | 355 | PEPA, glutamyl aminopeptidase; tetrahedral aminope | 99.69 | |
| 2afw_A | 329 | Glutaminyl-peptide cyclotransferase; alpha-beta pr | 99.68 | |
| 2vpu_A | 354 | TET3, 354AA long hypothetical operon protein FRV; | 99.56 | |
| 4fuu_A | 309 | Leucine aminopeptidase; phosphorylase/hydrolase li | 99.5 | |
| 3pb6_X | 330 | Glutaminyl-peptide cyclotransferase-like protein; | 99.5 | |
| 4f9u_A | 312 | CG32412; alpha/beta hydrolase, PGlu formation, PE, | 99.47 | |
| 1q7l_B | 88 | Aminoacylase-1; catalysis, enzyme dimerization, si | 99.46 | |
| 4fai_A | 330 | CG5976, isoform B; alpha/beta hydrolase, PGlu form | 99.44 | |
| 3isx_A | 343 | Endoglucanase; TM1050, structural genomics, joint | 99.4 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 99.04 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 99.04 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 98.66 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 98.64 | |
| 3k9t_A | 435 | Putative peptidase; structural genomics, joint cen | 96.31 | |
| 3vat_A | 496 | Dnpep, aspartyl aminopeptidase; alpha-beta-alpha s | 94.89 | |
| 4eme_A | 571 | M18 aspartyl aminopeptidase; dnpep/M18/aminopeptid | 94.76 | |
| 2glf_A | 450 | Probable M18-family aminopeptidase 1; putative, NY | 94.59 | |
| 1y7e_A | 458 | Probable M18-family aminopeptidase 1; aminopeptida | 94.07 | |
| 2ijz_A | 428 | Probable M18-family aminopeptidase 2; putative ami | 92.97 | |
| 1tkj_A | 284 | Aminopeptidase, SGAP; double-zinc metalloproteinas | 91.98 | |
| 2glj_A | 461 | Probable M18-family aminopeptidase 1; aminopeptida | 90.92 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 89.85 | |
| 3tc8_A | 309 | Leucine aminopeptidase; phosphorylase/hydrolase-li | 85.37 | |
| 1rtq_A | 299 | Bacterial leucyl aminopeptidase; bimetallic, zinc, | 85.0 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 84.75 | |
| 3h8g_F | 497 | Cytosol aminopeptidase; hydrolase, manganese, meta | 82.11 | |
| 3pei_A | 486 | Cytosol aminopeptidase; structural genomics, cente | 80.21 |
| >3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-56 Score=451.12 Aligned_cols=380 Identities=17% Similarity=0.239 Sum_probs=311.7
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEee------------------cCCCCeEEEEec
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF------------------AKNKPLILLKWP 84 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~------------------~~~~~nl~~~~~ 84 (447)
.+.+.+++++++++|++|||+| ++|.+++++|.++|+++|++++..+. .++++||++.++
T Consensus 21 i~~~~~~~~~~l~~l~~~ps~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~via~~~ 98 (433)
T 3pfo_A 21 VDRNFNDQVAFLQRMVQFRSVR--GEEAPQQEWLAQQFADRGYKVDTFSLADVDIASHPKAAPMDTIDPAGSMQVVATAD 98 (433)
T ss_dssp HHHHHHHHHHHHHHHHTSCCBT--TCCHHHHHHHHHHHHHTTCEEEEEETGGGTGGGSTTCCCCTTCCGGGCEEEEEEEC
T ss_pred HHhhHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHCCCceEEEecchhhhhccccccccccccCCCCcEEEEEEe
Confidence 3456788999999999999985 78899999999999999999886542 246789999998
Q ss_pred CCCCCCCeEEEeeccccCCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeec
Q 013216 85 GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVP 163 (447)
Q Consensus 85 g~~~~~~~ill~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 163 (447)
|.. .+|+|+|+|||||||.++ +.|+++||.++++ +|++||||++|||++++++|.|++.|.+.+.+++++|.|+|++
T Consensus 99 g~~-~~~~v~l~aH~D~vp~~~~~~w~~~pf~~~~~-~g~~~g~G~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~ 176 (433)
T 3pfo_A 99 SDG-KGRSLILQGHIDVVPEGPVDLWSDPPYEAKVR-DGWMIGRGAQDMKGGVSAMIFALDAIRTAGYAPDARVHVQTVT 176 (433)
T ss_dssp CCC-CSCCEEEEEECCBCCCCCGGGCSSCTTTCCEE-TTEEECTTTTTTHHHHHHHHHHHHHHHHTTEEESSCEEEEEES
T ss_pred cCC-CCCEEEEEcccCCcCCCCcccCCCCCCCcEEE-CCEEEecchhhhhHHHHHHHHHHHHHHHcCCCCCccEEEEEEe
Confidence 744 458999999999999987 7999999999997 9999999999999999999999999999887788999999999
Q ss_pred CcccCcccCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHH
Q 013216 164 DEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIE 242 (447)
Q Consensus 164 ~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~ 242 (447)
+||.|+ .|++.+++++. +.|++++.+ |+. ..++.+.+|..+++|+++|+++|+|.|+.| ||+..+++++.
T Consensus 177 ~EE~g~-~G~~~~~~~~~--~~d~~i~~e-----p~~-~~i~~~~~G~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~i~ 247 (433)
T 3pfo_A 177 EEESTG-NGALSTLMRGY--RADACLIPE-----PTG-HTLTRAQVGAVWFRLRVRGTPVHVAYSETGTSAILSAMHLIR 247 (433)
T ss_dssp CTTTTC-HHHHHHHHTTC--CCSEEEECC-----CCS-SCEEEEECEEEEEEEEEECCCCBGGGGGGSCCHHHHHHHHHH
T ss_pred cCccCC-hhHHHHHhcCC--CCCEEEEeC-----CCC-CceEEecceEEEEEEEEEcCCCccCCCCcCcCHHHHHHHHHH
Confidence 999976 59999887643 467777764 544 478899999999999999999999999988 99999999999
Q ss_pred HHHhchhhhHHHHH-hc-cccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC
Q 013216 243 SVRRFRASQFDLVK-AG-LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA 320 (447)
Q Consensus 243 ~l~~~~~~~~~~~~-~~-~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~ 320 (447)
.|+.+.....+... .+ .......++++++.+++|. +.|+||++|++.+++|++|.++.+++.++|+++++..
T Consensus 248 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vg~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~~~~~i~~~~~~~ 321 (433)
T 3pfo_A 248 AFEEYTKELNAQAVRDPWFGQVKNPIKFNVGIIKGGD------WASSTAAWCELDCRLGLLTGDTPQEAMRGIEKCLADA 321 (433)
T ss_dssp HHHHHHHHHHHHGGGCTTTTTSSSCSCEEEEEEEECS------CTTBCCCEEEEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccCccccccCCCceEEeeeEECCC------CCcccCcEEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 99876542211100 00 0001223589999999987 8999999999999999999999999999999888632
Q ss_pred C--C------CceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHH-cCCC
Q 013216 321 S--R------NMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE-RGLP 391 (447)
Q Consensus 321 ~--~------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~-~g~p 391 (447)
. . .++++ +. ....|++ ..+.++++++.+.+++++..+..+.+..+.|++|+++|.+ .|+|
T Consensus 322 ~~~~~~~~~~~~~v~---~~-------~~~~p~~-~~~~d~~~~~~~~~a~~~~~G~~~~~~~~~g~~D~~~~~~~~giP 390 (433)
T 3pfo_A 322 QATDSFLSENPAELV---WS-------GFQADPA-VCEPGGVAEDVLTAAHKAAFNAPLDARLSTAVNDTRYYSVDYGIP 390 (433)
T ss_dssp HTTCHHHHHSCCEEE---EE-------EEEECCE-ECCTTCHHHHHHHHHHHHHHSSCCCEEEESSCCTHHHHHHTTCCC
T ss_pred hhhCcccccCCeEEE---Ee-------cccCCcc-cCCCCCHHHHHHHHHHHHHhCCCCceeeeeeeccHHHHHhhCCCC
Confidence 1 1 13333 21 1223443 3556899999999999986443335566789999999988 4999
Q ss_pred eEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhhc
Q 013216 392 AIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYV 435 (447)
Q Consensus 392 ~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~~ 435 (447)
++.|||+.. ..|++||+++++++.+++++|+.++..+++..
T Consensus 391 ~v~~Gp~~~---~~H~~~E~i~~~~l~~~~~~~~~~i~~~~~~~ 431 (433)
T 3pfo_A 391 ALCYGPYGQ---GPHAFDERIDLESLRKTTLSIALFVAEWCGLR 431 (433)
T ss_dssp EEECCCCEE---CTTSTTCEEEHHHHHHHHHHHHHHHHHHHCEE
T ss_pred EEEECCCCc---cCCCCCceEEHHHHHHHHHHHHHHHHHHhccC
Confidence 999999843 69999999999999999999999999998653
|
| >1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-55 Score=435.96 Aligned_cols=375 Identities=19% Similarity=0.273 Sum_probs=300.6
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCC
Q 013216 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (447)
Q Consensus 25 ~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~ 104 (447)
.+.+++++++++|++|||+| ++|.+++++|.++|+++|++++.... ++.+|+++.+ |. +.|+|+|+|||||||.
T Consensus 3 l~~~~~~~~l~~lv~~ps~s--~~e~~~~~~l~~~l~~~G~~~~~~~~-~~~~nv~a~~-g~--~~~~i~l~~H~D~Vp~ 76 (393)
T 1vgy_A 3 LTETQSLELAKELISRPSVT--PDDRDCQKLMAERLHKIGFAAEEMHF-GNTKNIWLRR-GT--KAPVVCFAGHTDVVPT 76 (393)
T ss_dssp -CCSHHHHHHHHHHTSCCBT--TCCTTHHHHHHHHHHTTTCEEEECCB-TTBCEEEEEE-CS--SSSEEEEEEECCBCCC
T ss_pred CchHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHHHHHcCCcEEEEec-CCCcEEEEEE-CC--CCCEEEEEcccCCcCC
Confidence 35678999999999999996 67888999999999999998875442 3567999998 65 3589999999999999
Q ss_pred CC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcccccc
Q 013216 105 EP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN 183 (447)
Q Consensus 105 ~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 183 (447)
++ .+|+++||.+.++ ||++||||++|||++++++|.|++.|++.+.+++++|+|+|+++||+++..|++.+++.....
T Consensus 77 ~~~~~w~~~Pf~~~~~-~g~l~grG~~D~k~~~aa~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~~Ga~~~~~~~~~~ 155 (393)
T 1vgy_A 77 GPVEKWDSPPFEPAER-DGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKAR 155 (393)
T ss_dssp CCGGGSSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHHHHHHHT
T ss_pred CCcccCCCCCCceEEE-CCEEEecCcccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCcCCHHHHHHHHHhc
Confidence 87 7899999999997 999999999999999999999999999987778999999999999986557999888754332
Q ss_pred --CCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccc
Q 013216 184 --SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (447)
Q Consensus 184 --~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 260 (447)
.+|++++.+.+...+.+ ..+..+.+|..+++|+++|+++|++.|+.| ||+..+++++..|+.+.... ..
T Consensus 156 ~~~~d~~i~~e~~~~~~~g-~~i~~g~~G~~~~~i~v~G~~~Ha~~P~~g~nAi~~~a~~i~~l~~~~~~~-------~~ 227 (393)
T 1vgy_A 156 DELIDYCIVGEPTAVDKLG-DMIKNGRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDE-------GN 227 (393)
T ss_dssp TCCEEEEEECCCCBSSSTT-SEEECEECEEEEEEEEEECBCEETTCGGGCBCHHHHHHHHHHHHHHCCCCC-------CC
T ss_pred CcCCCEEEEeCCCCcccCC-ceeEEeeeeEEEEEEEEEccCcccCCCccCCCHHHHHHHHHHHhhcccccc-------cc
Confidence 24666655432211111 236788999999999999999999999988 99999999999998753210 00
Q ss_pred cCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeecccccccccccc
Q 013216 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDK 340 (447)
Q Consensus 261 ~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (447)
.....++++++.+++|.. +.|+||++|++.+|+|+.+.++.+++.++|+++++.....++++ +. .
T Consensus 228 ~~~~~~~~~v~~i~gG~~-----~~NviP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~~~~---~~-------~ 292 (393)
T 1vgy_A 228 EYFPPTSFQISNINGGTG-----ATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQ---WS-------C 292 (393)
T ss_dssp SSCCCCEEEEEEEEECCS-----CTTEECSEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE---EE-------E
T ss_pred cccCCCeEEEeeEcCCCC-----CCcccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhCCCeEEE---Ee-------c
Confidence 111235888999998742 78999999999999999999999999999998887432223333 22 1
Q ss_pred CCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHH
Q 013216 341 FGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKG 420 (447)
Q Consensus 341 ~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~ 420 (447)
...|.. .+++++++.+.+++++..+..+.+..+.|++|++++...++|++.|||+.. ..|++||+++++++.++
T Consensus 293 ~~~p~~---~~~~~l~~~~~~~~~~~~g~~~~~~~~~g~~D~~~~~~~~~P~v~~Gp~~~---~~H~~~E~i~~~~l~~~ 366 (393)
T 1vgy_A 293 SGQPFL---TQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAMAQELIELGPSNA---TIHQINENVRLNDIPKL 366 (393)
T ss_dssp EECCEE---CCSSHHHHHHHHHHHHHHSSCCEEECCSCCCTHHHHGGGEEEEEECCSBCT---TTTSTTCEEETTHHHHH
T ss_pred CCCccc---CCCcHHHHHHHHHHHHHcCCCceEecCCccchHHHHHhCCCCEEEECCCCC---CCCCCCCceeHHHHHHH
Confidence 233432 247899999999999975443344566689999999988899999999754 58999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 013216 421 IDIYESIIKAYASYV 435 (447)
Q Consensus 421 ~~~~~~~l~~l~~~~ 435 (447)
+++|+.++..+++..
T Consensus 367 ~~~~~~~l~~l~~~~ 381 (393)
T 1vgy_A 367 SAVYEGILVRLLAGN 381 (393)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999997543
|
| >3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-54 Score=428.63 Aligned_cols=370 Identities=19% Similarity=0.286 Sum_probs=294.5
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC-
Q 013216 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP- 106 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~- 106 (447)
+++++++++|+++||+| ++|.+++++|.++|+++|++++..+. ++.+|+++.+ |. ++|+|+|+||||+||.++
T Consensus 3 ~~~~~~~~~L~~~ps~s--~~e~~~~~~l~~~l~~~g~~~~~~~~-~~~~n~~a~~-g~--~~~~i~l~aH~D~vp~~~~ 76 (377)
T 3isz_A 3 EKVVSLAQDLIRRPSIS--PNDEGCQQIIAERLEKLGFQIEWMPF-NDTLNLWAKH-GT--SEPVIAFAGHTDVVPTGDE 76 (377)
T ss_dssp HHHHHHHHHHHTSCCBT--TCCTTHHHHHHHHHHHTTCEEEECCB-TTBCEEEEEE-ES--SSCEEEEEEECCBCCCCCG
T ss_pred hHHHHHHHHHhcCCCCC--CChhhHHHHHHHHHHHCCCceEEeec-CCCceEEEEe-CC--CCCEEEEeccccccCCCCc
Confidence 67899999999999996 67889999999999999999886543 3677999988 54 358999999999999987
Q ss_pred CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccc--cC
Q 013216 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF--NS 184 (447)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~--~~ 184 (447)
+.|+++||.+.++ +|++||||++|||++++++|.|++.|++.+.+++++|+|+|+++||.++..|++.+++.... ..
T Consensus 77 ~~w~~~pf~~~~~-~g~~~g~G~~D~k~g~~~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~~G~~~~~~~~~~~~~~ 155 (377)
T 3isz_A 77 NQWSSPPFSAEII-DGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDEK 155 (377)
T ss_dssp GGCSSCTTSCCEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCSSSHHHHHHHHHHTTCC
T ss_pred ccCCCCCCCcEEE-CCEEEeCChhhhhHHHHHHHHHHHHHHHhCCCCCceEEEEEEcccccCccccHHHHHHHHHhcCCC
Confidence 7899999999997 99999999999999999999999999988878899999999999998754599988875332 23
Q ss_pred CceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCC
Q 013216 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263 (447)
Q Consensus 185 ~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 263 (447)
+|++++.+.....+.+ ..+..+.+|..+++++++|+++|+|.|+.+ ||+..+++++..|+.+.... .....
T Consensus 156 ~d~~~~~e~~~~~~~g-~~i~~g~~g~~~~~i~~~G~~~Ha~~p~~g~nai~~~~~~i~~l~~~~~~~-------~~~~~ 227 (377)
T 3isz_A 156 ITYCMVGEPSSAKNLG-DVVKNGRRGSITGNLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDK-------GNEFF 227 (377)
T ss_dssp CCEEEECCCCBSSSTT-SEEEEEECEEEEEEEEEECC-------CGGGCHHHHHHHHHHHHHHCCCCC-------CCSSS
T ss_pred CCEEEEcCCCCcccCC-ceEEEEcceEEEEEEEEEccccccCCCccCcCHHHHHHHHHHHHHhccccc-------ccccc
Confidence 5666665432111111 237789999999999999999999999988 99999999999998753210 01112
Q ss_pred CcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCC
Q 013216 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGR 343 (447)
Q Consensus 264 ~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (447)
..++++++.+++|.. +.|+||++|++.+|+|+++.++.+++.++|+++++. .+.+++ ++.. ....
T Consensus 228 ~~~~~~v~~i~gg~~-----~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~~~~--~g~~~~---i~~~-----~~~~ 292 (377)
T 3isz_A 228 PPTSLQIANIHAGTG-----SNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEK--HNLKYR---IEWN-----LSGK 292 (377)
T ss_dssp CCCEEEEEEEEECCS-----CSSCCCSEEEEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEE---EEEE-----ECCC
T ss_pred CCceeEEEEEECCCC-----CCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHH--cCCCeE---EEEE-----ecCC
Confidence 346889999998752 689999999999999999999999999999988874 344555 3310 1234
Q ss_pred CcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013216 344 PILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 423 (447)
Q Consensus 344 p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~ 423 (447)
|.. .+++++++.+.+++++..+..+.+..+.|++|++++...|+|++.|||+.. ..|++||+++++++.+++++
T Consensus 293 p~~---~~~~~l~~~l~~a~~~~~g~~~~~~~~~g~tDa~~~~~~g~~~v~~Gp~~~---~~H~~~E~i~~~~l~~~~~i 366 (377)
T 3isz_A 293 PFL---TKPGKLLDSITSAIEETIGITPKAETGGGTSDGRFIALMGAEVVEFGPLNS---TIHKVNECVSVEDLGKCGEI 366 (377)
T ss_dssp CEE---CCTTHHHHHHHHHHHHHHSCCCEEEECSSCCSHHHHHTTTCEEEECCSBCT---TTTSTTCEEEHHHHHHHHHH
T ss_pred CCc---CCCCHHHHHHHHHHHHHhCCCCeeeccCcccHHHHHHHcCCCEEEECCCCC---cccCCCCcEEHHHHHHHHHH
Confidence 432 446899999999999954333255566789999999999999999999864 59999999999999999999
Q ss_pred HHHHHHHHHh
Q 013216 424 YESIIKAYAS 433 (447)
Q Consensus 424 ~~~~l~~l~~ 433 (447)
|+.++.+|+.
T Consensus 367 ~~~~i~~ll~ 376 (377)
T 3isz_A 367 YHKMLVNLLD 376 (377)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999998864
|
| >2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=421.19 Aligned_cols=357 Identities=19% Similarity=0.217 Sum_probs=286.6
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCC---ChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeecc
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQPNP---DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHT 99 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s~~~---~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~ 99 (447)
.+.+.+++++++++|++|||+|+.+ +|.+++++|.++|+ |++++..+...+++|+++ ++|+ |+|+|++||
T Consensus 4 ~~~~~~~~~~~l~~l~~ips~s~~~~~~~e~~~~~~l~~~l~--G~~~~~~~~~~~~~~~~a-~~g~----~~i~l~~H~ 76 (369)
T 2f7v_A 4 MTDLLASTLEHLETLVSFDTRNPPRAIAAEGGIFDYLRAQLP--GFQVEVIDHGDGAVSLYA-VRGT----PKYLFNVHL 76 (369)
T ss_dssp CCHHHHHHHHHHHHHHHSCCBTTTTCCCSSSHHHHHHHTTCT--TCEEEEEECSTTCEEEEE-EESC----CSEEEEEEC
T ss_pred hhhhhHHHHHHHHHHhCCCCcCCCCCCccHHHHHHHHHHHhC--CCceEEEEcCCCceEEEE-EcCC----CeEEEEeee
Confidence 4456789999999999999998656 89999999999999 999886654446789999 8764 789999999
Q ss_pred ccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCccc-CcccCHHHHHc
Q 013216 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI-GGHDGAEKFAD 178 (447)
Q Consensus 100 Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~-g~~~G~~~~~~ 178 (447)
||||.++ .|+++||+++++ ||++||||++|||++++++|.+++. ++++|+|+|+++||+ |+ .|++.+++
T Consensus 77 D~vp~~~-~w~~~pf~~~~~-~g~l~grG~~D~k~g~a~~l~a~~~-------~~~~v~~~~~~~EE~~g~-~G~~~~~~ 146 (369)
T 2f7v_A 77 DTVPDSP-HWSADPHVMRRT-EDRVIGLGVCDIKGAAAALVAAANA-------GDGDAAFLFSSDEEANDP-RCIAAFLA 146 (369)
T ss_dssp CBCCCCS-SCSSCTTSCEEC-SSEEECTTTTTTHHHHHHHHHHHTT-------CCCCEEEEEESCTTSSSC-CHHHHHHT
T ss_pred cccCCCC-CCCCCCCCcEEE-CCEEEecccccccHHHHHHHHHHhc-------CCCCEEEEEEeCcccCCC-cCHHHHHh
Confidence 9999975 799999999997 9999999999999999999999875 678999999999998 54 79999998
Q ss_pred cccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCC-CC-CHHHHHHHHHHHHHhchhhhHHHHH
Q 013216 179 SHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLY-DN-SAMENLFKSIESVRRFRASQFDLVK 256 (447)
Q Consensus 179 ~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~ 256 (447)
++. +.|++++++ |+. ..++.+.+|..+++|+++|+++|+|.|+ .| ||+..+++++..|+.+.... .
T Consensus 147 ~~~--~~d~~i~~e-----~~~-~~i~~~~~g~~~~~i~v~G~~~Ha~~p~~~g~nAi~~~~~~i~~l~~~~~~~----~ 214 (369)
T 2f7v_A 147 RGL--PYDAVLVAE-----PTM-SEAVLAHRGISSVLMRFAGRAGHASGKQDPAASALHQAMRWGGKALDHVESL----A 214 (369)
T ss_dssp TCC--CCSEEEECC-----CST-TCBBCCBCCEEEEEEEEECCCC------CTTSCHHHHHHHHHHHHHHHHHHT----T
T ss_pred cCC--CCCEEEECC-----CCC-CcceeecCceEEEEEEEeeeCcccCCCCcCCCCHHHHHHHHHHHHHhhhhhh----c
Confidence 754 467777764 443 4678899999999999999999999999 78 99999999999987654211 0
Q ss_pred hccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeecccccccc
Q 013216 257 AGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRAS 336 (447)
Q Consensus 257 ~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 336 (447)
.........++++++.+++|. +.|+||++|++.+|+|+++.++.+++.++|+++++.. +++++ ++.
T Consensus 215 ~~~~~~~~~~~~~vg~i~gG~------~~NviP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~~--~~~~~---~~~--- 280 (369)
T 2f7v_A 215 HARFGGLTGLRFNIGRVDGGI------KANMIAPAAELRFGFRPLPSMDVDGLLATFAGFADPA--AAHFE---ETF--- 280 (369)
T ss_dssp TCEETTEESCEEEEEEEEECS------STTSCCSEEEEEEEEECCTTCCHHHHHHHHHHTCSSC--CSEEE---EEE---
T ss_pred ccccCcccCCceEEEEeecCC------CCCcCCCceEEEEEEeeCCCCCHHHHHHHHHHHHHHh--cCceE---EEe---
Confidence 000000001589999999987 8999999999999999999999999999999888643 34555 331
Q ss_pred cccc-CCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHH
Q 013216 337 LHDK-FGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQA 415 (447)
Q Consensus 337 ~~~~-~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~ 415 (447)
. ..+|++ ..+. +++++.+.+++++..+..+. ....|++|+++|.+.|+|++.|||+... ..|++||+++++
T Consensus 281 ---~~~~~~~~-~~~~-~~l~~~~~~a~~~~~g~~~~-~~~~g~~D~~~~~~~g~p~v~~Gpg~~~--~~H~~~E~~~~~ 352 (369)
T 2f7v_A 281 ---RGPSLPSG-DIAR-AEERRLAARDVADALDLPIG-NAVDFWTEASLFSAGGYTALVYGPGDIA--QAHTADEFVTLA 352 (369)
T ss_dssp ---EECCBSCS-SHHH-HHHHHHHHHHHHHHTTCCBC-CCBSSCCTHHHHHHTTCCEEECCSSCGG--GTTCTTCEEEHH
T ss_pred ---ccCCCCcc-CCCC-CHHHHHHHHHHHHhhCCCCC-ccccccCcHHHHhhCCCCEEEECCCCcc--ccCCCCceEEHH
Confidence 1 233443 2233 78999999999987554323 3467899999999999999999997543 699999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013216 416 EYLKGIDIYESIIKA 430 (447)
Q Consensus 416 ~l~~~~~~~~~~l~~ 430 (447)
++.+++++|+.++..
T Consensus 353 ~l~~~~~~~~~~~~~ 367 (369)
T 2f7v_A 353 QLQRYVESVNRIING 367 (369)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998763
|
| >3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-53 Score=431.34 Aligned_cols=389 Identities=17% Similarity=0.159 Sum_probs=302.7
Q ss_pred CCh-hHHHHHHHhhhcccCCCCC--------CChhHHHHHHHHHHHHCCCc---eEEEeecCCCCeEEEEecCCCCCCCe
Q 013216 25 KSD-DSIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLE---SQTLEFAKNKPLILLKWPGSNPQLPS 92 (447)
Q Consensus 25 ~~~-~~~~~~l~~l~~ips~s~~--------~~e~~~~~~i~~~l~~~G~~---~~~~~~~~~~~nl~~~~~g~~~~~~~ 92 (447)
.+. ++++++|++|++|||+|+. ++|.++++++.++|+++|++ ++.++...+++||++.++|. ++|+
T Consensus 14 ~~~~~~~~~~l~~lv~ips~s~~~~~~~~~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~v~a~~~g~--~~~~ 91 (472)
T 3pfe_A 14 QQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ--IDDT 91 (472)
T ss_dssp HHHHHTHHHHHHHHHTCCCBCGGGCTTHHHHCHHHHHHHHHHHHHHHTCCTTCEEEEECCTTSCCEEEEEECCS--EEEE
T ss_pred HhhHHHHHHHHHHHhCCCCcCCCccccccccchHHHHHHHHHHHHHHcCCCCcceEEEecCCCCcEEEEEEcCC--CCCe
Confidence 345 7799999999999999853 34889999999999999995 54444333478999999873 4589
Q ss_pred EEEeeccccCCCCCCCCC--cCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcc
Q 013216 93 ILLNSHTDVVPSEPSKWS--HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170 (447)
Q Consensus 93 ill~~H~Dtvp~~~~~W~--~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 170 (447)
|+|+|||||||+. +.|+ ++||++.++ +|++||||++|||++++++|.|++.|++.+..+. +|+|+|+++||+|+
T Consensus 92 i~l~~H~D~vp~~-~~w~~~~~Pf~~~~~-~g~~~grG~~D~K~~~a~~l~a~~~l~~~~~~~~-~v~~~~~~~EE~g~- 167 (472)
T 3pfe_A 92 VLLYGHLDKQPEM-SGWSDDLHPWKPVLK-NGLLYGRGGADDGYSAYASLTAIRALEQQGLPYP-RCILIIEACEESGS- 167 (472)
T ss_dssp EEEEEECCBCCCC-SCCCTTCBTTBCEEE-TTEEESTTCCCCCHHHHHHHHHHHHHHHTTCCCE-EEEEEEESCGGGTS-
T ss_pred EEEEccccCCCCc-CCCCcCCCCCceEEE-CCEEEEeCcccCcHHHHHHHHHHHHHHHcCCCCC-cEEEEEEeCCCCCC-
Confidence 9999999999996 7899 999999997 9999999999999999999999999999887766 99999999999986
Q ss_pred cCHHHHHccc--cccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEE--eecCCccCCCCCC--CHHHHHHHHHHHH
Q 013216 171 DGAEKFADSH--VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKA--RGAPGHGAKLYDN--SAMENLFKSIESV 244 (447)
Q Consensus 171 ~G~~~~~~~~--~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v--~G~~~Hs~~p~~g--nai~~~~~~i~~l 244 (447)
.|++.+++++ .+.++|+++++|.+...++ ...+..+.+|..+++++| +|+++|+|.|+.. ||+..+++++..|
T Consensus 168 ~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~i~~g~~G~~~~~~~v~~~G~~~H~~~~~~~~~nai~~~~~~i~~l 246 (472)
T 3pfe_A 168 YDLPFYIELLKERIGKPSLVICLDSGAGNYE-QLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISRI 246 (472)
T ss_dssp TTHHHHHHHHHHHHCCCSEEEEECCBCSCSS-SCEEEEEECEEEEEEEEEESCSSCBCHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHhhccCCCEEEEeCCCcCCCC-CeeEEEeeeEEEEEEEEEEeCCCCcccCCCCCCCCCHHHHHHHHHHHh
Confidence 6999999875 4556789999986544333 468999999999877555 8999999998754 9999999999999
Q ss_pred Hhchh-----------------hhHHHHHh--------------ccccCC--C---------cceeeeeeeecCCCCCCC
Q 013216 245 RRFRA-----------------SQFDLVKA--------------GLKAEG--E---------VVSVNMAFLKAGTPSPNG 282 (447)
Q Consensus 245 ~~~~~-----------------~~~~~~~~--------------~~~~~~--~---------~~t~~~~~i~~g~~~~~~ 282 (447)
+.+.. ..+..+.. +..... . .++++++.|++|.. ++
T Consensus 247 ~~~~~~~i~i~gf~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~i~~i~gG~~--~g 324 (472)
T 3pfe_A 247 EDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPA--IA 324 (472)
T ss_dssp BCTTTCCBCCGGGCCCCCHHHHHHHHHHHHHHGGGGTTTSCCCTTCCCSCSCHHHHHHHHHTSCEEEEEEEESCCC--TT
T ss_pred hCcCCCCEeCCCcccCCCCccHHHHHHHhhhccHHHHHhcccccCccccccchHHHHHHhhcCCcEEEeeeecCcC--CC
Confidence 88720 00000000 000000 0 46899999998731 23
Q ss_pred ccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCC-CCceEeeccccccccccccC-CCCcccccCCCCh-HHHHH
Q 013216 283 FVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFELGQFKQRASLHDKF-GRPILTATDSSNP-WWNLL 359 (447)
Q Consensus 283 ~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~-~~~~~ 359 (447)
.+.|+||++|++.+|+|+.+.++.+.+.++|+++++... ++++++ ++. .. .+|++ ..+.+++ +++.+
T Consensus 325 ~a~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~g~~v~---v~~------~~~~~pp~-~~~~n~~~l~~~~ 394 (472)
T 3pfe_A 325 DAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVD---FKI------QNGGSKGW-NAPLLSDWLAKAA 394 (472)
T ss_dssp TCCSCBCSEEEEEEEEEECTTCCHHHHHHHHHHHHHSSCGGGCEEE---EEE------CSCCBCCE-ECCCCCHHHHHHH
T ss_pred CCCCEeCCccEEEEEeecCCCCCHHHHHHHHHHHHHhhCCCCeEEE---EEe------cCCCCCcc-cCCCCChHHHHHH
Confidence 389999999999999999999999999999999887432 456666 442 23 44544 3444566 77999
Q ss_pred HHHHHHhcCCCCCceecCCCcc-h-HHHHHc--CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhh
Q 013216 360 EEAVRKANGKLGKPEIFPASTD-A-RYFRER--GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~g~~D-~-~~~~~~--g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
.++++++.+..+. ....|++| + ++|.+. |+|.+.+|++..+ ...|+|||+++++++.+++++|+.++..++++
T Consensus 395 ~~a~~~~~G~~~~-~~~~gg~d~f~~~~~~~~Pg~p~v~~G~g~~~-~~~H~p~E~i~~~~l~~g~~~l~~~l~~la~~ 471 (472)
T 3pfe_A 395 SEASMTYYDKPAA-YMGEGGTIPFMSMLGEQFPKAQFMITGVLGPH-SNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQK 471 (472)
T ss_dssp HHHHHHHHSSCCE-EEEESSCCHHHHHHHHHCTTCEEEEECCBCTT-CCTTSTTCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCce-eccCCCchhhHHHHHHHcCCCCEEEecCCCCC-CCCcCCCcceeHHHHHHHHHHHHHHHHHHhhc
Confidence 9999986544322 23346667 4 677764 7788888876432 26999999999999999999999999998754
|
| >3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=414.27 Aligned_cols=344 Identities=21% Similarity=0.281 Sum_probs=280.6
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC
Q 013216 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~ 105 (447)
..+++++++++|++|||+| ++|.+++++|.++|+++|++++.. .+|++++++|.++..|+|+|+|||||||.+
T Consensus 9 ~~~~~~~~~~~l~~~ps~s--~~e~~~~~~l~~~l~~~g~~~~~~-----~~nv~a~~~g~~~~~~~i~l~aH~D~vp~~ 81 (356)
T 3ct9_A 9 MTAEAVSLLKSLISIPSIS--REETQAADFLQNYIEAEGMQTGRK-----GNNVWCLSPMFDLKKPTILLNSHIDTVKPV 81 (356)
T ss_dssp HHHHHHHHHHHHHTSCCBT--TCCHHHHHHHHHHHHHTTCCEEEE-----TTEEEEECSSCCTTSCEEEEEEECCBCCCC
T ss_pred HHHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHHHHCCCeEEEE-----eeeEEEEEecCCCCCCeEEEEccccccCCC
Confidence 4678999999999999996 788899999999999999988753 459999998733335899999999999997
Q ss_pred CCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCccc-CcccCHHHHHccccccC
Q 013216 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI-GGHDGAEKFADSHVFNS 184 (447)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~-g~~~G~~~~~~~~~~~~ 184 (447)
+ .|+.+||++.++ +|++||||++|||++++++|.|++.|.+.+ ++++|+|+|+++||+ |+ .|++.+++++ .+
T Consensus 82 ~-~w~~~p~~~~~~-~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~~g~-~G~~~~~~~~--~~ 154 (356)
T 3ct9_A 82 N-GWRKDPFTPREE-NGKLYGLGSNDAGASVVSLLQVFLQLCRTS--QNYNLIYLASCEEEVSGK-EGIESVLPGL--PP 154 (356)
T ss_dssp --------CCCEEC-SSEEESTTTTTTHHHHHHHHHHHHHHTTSC--CSSEEEEEEECCGGGTCT-TTHHHHGGGS--CC
T ss_pred C-CCCCCCCccEEE-CCEEEecCcccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEeCcccCCc-cCHHHHHhhC--CC
Confidence 5 799999999997 999999999999999999999999999876 789999999999998 64 7999999865 34
Q ss_pred CceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCC
Q 013216 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263 (447)
Q Consensus 185 ~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 263 (447)
+|++++.+ |+. ..+..+.+|..+++|+++|+++|+|.| .| ||+..+++++..|+.+.... .....
T Consensus 155 ~d~~i~~e-----p~~-~~i~~~~~G~~~~~i~~~G~~~Ha~~p-~g~nAi~~~~~~i~~l~~~~~~~-------~~~~~ 220 (356)
T 3ct9_A 155 VSFAIVGE-----PTE-MQPAIAEKGLMVLDVTATGKAGHAARD-EGDNAIYKVLNDIAWFRDYRFEK-------ESPLL 220 (356)
T ss_dssp CSEEEECC-----SBT-TCCEEEECCCEEEEEEEECBCCBTTSS-CCBCTTGGGHHHHHHHHHCCCSC-------CBTTT
T ss_pred CCEEEEcC-----CCC-ceEEEeeeEEEEEEEEEECCCcccCCC-CCCCHHHHHHHHHHHHHhhhccc-------ccccC
Confidence 67777764 443 457789999999999999999999999 88 99999999999998764311 00011
Q ss_pred CcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCC
Q 013216 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGR 343 (447)
Q Consensus 264 ~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (447)
..++++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|+++++. +++ +. ...+
T Consensus 221 ~~~~~~vg~i~gG~------~~NviP~~a~~~~~iR~~~~~~~~~~~~~i~~~~~~-----~~~---~~-------~~~~ 279 (356)
T 3ct9_A 221 GPVKMSVTVINAGT------QHNVVPDKCTFVVDIRSNELYSNEDLFAEIRKHIAC-----DAK---AR-------SFRL 279 (356)
T ss_dssp BSCEEEEEEEEECS------STTBCCSEEEEEEEEECCTTCCHHHHHHHHHHHCCS-----EEE---ES-------CSCS
T ss_pred CCCcEEeeEEecCC------cCCcCCCceEEEEEEeeCCCCCHHHHHHHHHHHhhC-----eEE---Ee-------eccC
Confidence 23689999999987 999999999999999999999999999999988863 444 32 1233
Q ss_pred CcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013216 344 PILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 423 (447)
Q Consensus 344 p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~ 423 (447)
|++ ..++++++++.+.++++ .+....|++|++ ..++|++.|||+... ..|++||+++++++.+++++
T Consensus 280 ~~~-~~~~~~~l~~~~~~~~~-------~~~~~~g~tD~~---~~~~p~v~~G~g~~~--~~H~~~E~i~~~~l~~~~~~ 346 (356)
T 3ct9_A 280 NSS-RIDEKHPFVQKAVKMGR-------IPFGSPTLSDQA---LMSFASVKIGPGRSS--RSHTAEEYIMLKEIEEAIGI 346 (356)
T ss_dssp CCE-ECCTTSHHHHHHHHTTC-------CCEEECSCCGGG---GCCSCEEECCSSBGG--GTTSTTCEEEHHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHHhc-------CCcccccccchh---hcCCCEEEECCCccc--cCcCCCcEEEHHHHHHHHHH
Confidence 443 35568899988877654 234567999999 348999999998543 68999999999999999999
Q ss_pred HHHHHHHH
Q 013216 424 YESIIKAY 431 (447)
Q Consensus 424 ~~~~l~~l 431 (447)
|+.++..+
T Consensus 347 ~~~~~~~~ 354 (356)
T 3ct9_A 347 YLDLLDGL 354 (356)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99988754
|
| >1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-53 Score=421.91 Aligned_cols=368 Identities=18% Similarity=0.222 Sum_probs=300.3
Q ss_pred CCChhHHHHHHHhhhcccCCCCCC-ChhHHHHHHHHHHHHCCCceEEEeec--CCCCeEEEEecCCCCCCCeEEEeeccc
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFA--KNKPLILLKWPGSNPQLPSILLNSHTD 100 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~-~e~~~~~~i~~~l~~~G~~~~~~~~~--~~~~nl~~~~~g~~~~~~~ill~~H~D 100 (447)
+.+.++++++|++|++|||+|... ++.++++||.++|+++|++++..+.. ...+|++++++|.+ .|+|+|+||||
T Consensus 15 ~~~~~~~~~~l~~lv~i~s~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~v~a~~~g~~--~~~i~l~aH~D 92 (393)
T 1cg2_A 15 TDEQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRG--GKNLLLMSHMD 92 (393)
T ss_dssp HHHHHHHHHHHHHHHTSCCBTTCHHHHHHHHHHHHHHHHHTTCEEEEEECSTTCCSEEEEEEEECSS--CCCEEEEEECC
T ss_pred HhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEecCcCCCCCeEEEEECCCC--CceEEEEEecC
Confidence 345788999999999999986321 24689999999999999998866532 12469999998653 38999999999
Q ss_pred cCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccc
Q 013216 101 VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (447)
Q Consensus 101 tvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (447)
|||+. ..|+..||. ++ +|++||||++|||++++++|.|++.|.+.+.+++++|+|+|+++||+|+ .|++.+++++
T Consensus 93 ~vp~~-~~~~~~Pf~--~~-~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~-~G~~~~~~~~ 167 (393)
T 1cg2_A 93 TVYLK-GILAKAPFR--VE-GDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGS-FGSRDLIQEE 167 (393)
T ss_dssp BSCCT-THHHHSCCE--EE-TTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTT-TTTHHHHHHH
T ss_pred cCCCC-CccccCCee--ee-CCEEEcCCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEEcccccCC-ccHHHHHHHH
Confidence 99975 358778998 65 9999999999999999999999999999887788899999999999986 6999998864
Q ss_pred cccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhc
Q 013216 181 VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (447)
Q Consensus 181 ~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~ 258 (447)
.. ++|++++++.+.. + ...++.+.+|..+++|+++|+++|+| .|+.| ||+..+++++..|+.+...
T Consensus 168 ~~-~~d~~i~~e~~~~-~--~~~i~~~~~G~~~~~i~v~G~~~Hag~~p~~g~nAi~~~~~~i~~l~~~~~~-------- 235 (393)
T 1cg2_A 168 AK-LADYVLSFEPTSA-G--DEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDK-------- 235 (393)
T ss_dssp HH-HCSEEEECCCEET-T--SCEEESEECEEEEEEEEEECBCEETTSCGGGSBCHHHHHHHHHHHHGGGCBT--------
T ss_pred hh-cCCEEEEeCCCCC-C--CCcEEEeeeeeEEEEEEEEeeecccCCCcccCcCHHHHHHHHHHHHHhhhCc--------
Confidence 33 4678888764320 1 24688899999999999999999996 69988 9999999999999876431
Q ss_pred cccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc-CCCCceEeeccccccccc
Q 013216 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFELGQFKQRASL 337 (447)
Q Consensus 259 ~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 337 (447)
...++++++.+++|. +.|+||++|++.+|+|+++.++.+.+.++|+++++. ...+++++ ++.
T Consensus 236 ----~~~~~~~v~~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~---~~~---- 298 (393)
T 1cg2_A 236 ----AKNLRFNWTIAKAGN------VSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVK---VIV---- 298 (393)
T ss_dssp ----TTTEEEEEEEEEECS------STTEECSEEEEEEEEEESSHHHHHHHHHHHHHHHTSCSSTTCEEE---EEE----
T ss_pred ----ccCceEEEEEEeCCC------CCCEECcccEEEEEEeeCChhhHHHHHHHHHHHHhcccCCCcEEE---EEe----
Confidence 123689999999987 999999999999999999999999999999999874 23456666 442
Q ss_pred cccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCcee-cCCCcchHHHHHcCCCeE-EEccCCCCCCCCCC-CCccccH
Q 013216 338 HDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEI-FPASTDARYFRERGLPAI-GFSPMANTPILLHD-HNEFLNQ 414 (447)
Q Consensus 338 ~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~g~~D~~~~~~~g~p~~-~~gp~~~~~~~~H~-~~E~v~~ 414 (447)
...+|++...+.++++++.+.+++++++... .+.. +.|++|+++|...|+|++ .|||+.. ..|+ |||++++
T Consensus 299 --~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~g~tD~~~~~~~giP~~~~~G~~~~---~~H~~~~E~i~~ 372 (393)
T 1cg2_A 299 --TRGRPAFNAGEGGKKLVDKAVAYYKEAGGTL-GVEERTGGGTDAAYAALSGKPVIESLGLPGF---GYHSDKAEYVDI 372 (393)
T ss_dssp --EECSCCEECHHHHHHHHHHHHHHHHHTTCCC-EEESCBSCCCTHHHHGGGSCCEECCCSCEEE---CTTSSSCCEEEG
T ss_pred --ccccCCccCCcchHHHHHHHHHHHHHhCCCC-ccccCCCcccHHHHHHhCCCCEEEeCCCCCC---CccCCCcceEEe
Confidence 2334443211235789999999998776543 4455 679999999999999998 6888643 5899 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 013216 415 AEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 415 ~~l~~~~~~~~~~l~~l~~ 433 (447)
+++.+++++|..++..+++
T Consensus 373 ~~l~~~~~~~~~~~~~l~~ 391 (393)
T 1cg2_A 373 SAIPRRLYMAARLIMDLGA 391 (393)
T ss_dssp GGHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999875
|
| >2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-52 Score=425.32 Aligned_cols=389 Identities=17% Similarity=0.212 Sum_probs=302.7
Q ss_pred CCChh-HHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeecccc
Q 013216 24 AKSDD-SIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (447)
Q Consensus 24 ~~~~~-~~~~~l~~l~~ips~s~~-~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dt 101 (447)
+.+.+ ++++++++|++|||+|+. .++.++++||.++|+++|++++..+. .+.+||+++++|.+++.|+|+|+|||||
T Consensus 39 ~~~~~~~~~~~l~~l~~ips~s~~e~~~~~~~~~l~~~l~~~G~~~~~~~~-~~~~~v~a~~~g~~~~~~~i~l~aH~D~ 117 (481)
T 2pok_A 39 KDHVAQHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDES-YTAPFVMAHFKSSRPDAKTLIFYNHYDT 117 (481)
T ss_dssp HCHHHHHHHHHHHHHHHSCCCGGGCTTHHHHHHHHHHHHHHTTCEEEEECS-SSSCEEEEEECCSSTTCCEEEEEEECCC
T ss_pred HhhhhHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHHHcCCEEEEecC-CCCcEEEEEecCCCCCCCeEEEEEeccC
Confidence 45567 899999999999998742 24589999999999999998876542 3578999999865345689999999999
Q ss_pred CCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccc
Q 013216 102 VPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (447)
Q Consensus 102 vp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (447)
||.++ +.|+++||.+.++ ||++||||++|||++++++|.|++.|.+.+..++++|+|+|+++||+|+ .|++.+++++
T Consensus 118 vp~~~~~~w~~~pf~~~~~-~g~l~grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~-~g~~~~~~~~ 195 (481)
T 2pok_A 118 VPADGDQVWTEDPFTLSVR-NGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISFIMEGAEESAS-TDLDKYLEKH 195 (481)
T ss_dssp CCSCSSCCCSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHTCSSCSSEEEEEEESCGGGTT-TTHHHHHHHH
T ss_pred cCCCCccccccCCCCceee-CCeEEccccccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccCc-hhHHHHHHHh
Confidence 99987 6899999999997 9999999999999999999999999999855788999999999999986 6998888764
Q ss_pred --cccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecC--CccCCCCCC-CHHHHHHHHHHHHHhchh------
Q 013216 181 --VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAP--GHGAKLYDN-SAMENLFKSIESVRRFRA------ 249 (447)
Q Consensus 181 --~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~--~Hs~~p~~g-nai~~~~~~i~~l~~~~~------ 249 (447)
.++++|++++.+.+... .+...+..+.+|..+++|+++|++ +|++.|+.+ ||+..+++++..|+.+..
T Consensus 196 ~~~~~~~d~~i~~~~~~~~-~~~~~i~~~~~G~~~~~i~v~G~~g~~Hss~p~~g~nAi~~~a~~i~~l~~~~~~i~i~g 274 (481)
T 2pok_A 196 ADKLRGADLLVWEQGTKNA-LEQLEISGGNKGIVTFDAKVKSADVDIHSSYGGVVESAPWYLLQALQSLRAADGRILVEG 274 (481)
T ss_dssp HHHHTTCSEEECSCCBBCT-TSCEEEECCBCEEEEEEEEEECSSSCEEGGGTTTBCCHHHHHHHHHHHTBCTTSCBCCTT
T ss_pred HhhccCCCEEEECCCCccC-CCCeeEEEecceeEEEEEEEecCCCCccccCCCCCCCHHHHHHHHHHHhhCCCCceeccc
Confidence 24436777776543221 112468889999999999999999 899889988 999999999999876430
Q ss_pred ----------hhHHHHHh-------------cc-ccC------------CCcceeeeeeeecCCCCCCCccccccCCceE
Q 013216 250 ----------SQFDLVKA-------------GL-KAE------------GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAE 293 (447)
Q Consensus 250 ----------~~~~~~~~-------------~~-~~~------------~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~ 293 (447)
...+.+.. +. ... ...++++++.|++|.. +..+.|+||++|+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~t~~vg~i~gG~~--~~~~~NvIP~~a~ 352 (481)
T 2pok_A 275 LYEEVQEPNEREMALLETYGQRNPEEVSRIYGLELPLLQEERMAFLKRFFFDPALNIEGIQSGYQ--GQGVKTILPAEAS 352 (481)
T ss_dssp TGGGSCCCCHHHHHHHHHHSCSCGGGHHHHHTCCSCCSSCSHHHHHHHHHHSCEEEEEEEEEECC--SSSCCCEECSEEE
T ss_pred hhhcCCCCCHHHHHHHHhcCcccHHHHHHhhCcccccccccchhHHHHHhhcCeEeEEeeecCCC--CCCCCeeccCeeE
Confidence 00000000 00 000 0136899999998752 1226899999999
Q ss_pred EEEeeecCCCCCHHHHHHHHHHHhccCC-CCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCC
Q 013216 294 AGFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGK 372 (447)
Q Consensus 294 ~~~d~R~~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 372 (447)
+.+|+|+.+.++.+.+.++|+++++... .+++++ +. ..+|++ .++.++++++.+.+++++..+..+.
T Consensus 353 ~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~~v~---~~--------~~~p~~-~~~~d~~l~~~~~~a~~~~~g~~~~ 420 (481)
T 2pok_A 353 AKLEVRLVPGLEPHDVLEKIRKQLDKNGFDKVELY---YT--------LGEMSY-RSDMSAPAILNVIELAKKFYPQGVS 420 (481)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHTTCTTEEEE---EE--------EEECCB-CCCSCSHHHHHHHHHHTTTCTTCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEE---Ec--------cCCCcc-cCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 9999999999999999999999887432 455555 33 233443 4566899999999999987554321
Q ss_pred ceecCCCc-chHHHHH-cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013216 373 PEIFPAST-DARYFRE-RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 431 (447)
Q Consensus 373 ~~~~~g~~-D~~~~~~-~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l 431 (447)
.....|++ |+++|.+ .|+|++.|||+... ...|++||+++++++.+++++|+.++..+
T Consensus 421 ~~~~~gg~~D~~~~~~~~g~p~v~~G~g~~~-~~~H~~~E~i~i~~l~~~~~~~~~~l~~l 480 (481)
T 2pok_A 421 VLPTTAGTGPMHTVFDALEVPMVAFGLGNAN-SRDHGGDENVRIADYYTHIELVEELIRSY 480 (481)
T ss_dssp EESCBSSCCTHHHHHHHHCCCEEBCCSBCTT-CCTTSTTCEEEHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCCchHHHHHHcCCCEEEecCCCcc-cCCCCCCCcEEHHHHHHHHHHHHHHHHhc
Confidence 22333444 9998865 58999999998621 36999999999999999999999988754
|
| >3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-51 Score=421.83 Aligned_cols=394 Identities=15% Similarity=0.230 Sum_probs=298.4
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCCC------hhHHHHHHHHHHHHCCCceEEEeec-----CC-----CCeEEEEecCC
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQPNPD------YTNASKFILAQAEALSLESQTLEFA-----KN-----KPLILLKWPGS 86 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s~~~~------e~~~~~~i~~~l~~~G~~~~~~~~~-----~~-----~~nl~~~~~g~ 86 (447)
.+.+.+++++++++|++|||+|.+++ +.++++||.++|+++|++++..+.. .| .+||++.+.+.
T Consensus 20 i~~~~~~~i~~l~~lv~ips~~~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~~v~a~~~~~ 99 (485)
T 3dlj_A 20 IDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQSLPIPPVILAELGSD 99 (485)
T ss_dssp HHHTHHHHHHHHHHHHTSCCBSSSCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCEEEC--CCEEECCCEEEEEECCC
T ss_pred HHHhHHHHHHHHHHHhcCCCccCCCCccccHHHHHHHHHHHHHHHHcCCeEEEEecCcccccCCCccCCCcEEEEEECCC
Confidence 34578899999999999999933344 6789999999999999998865432 23 36899998643
Q ss_pred CCCCCeEEEeeccccCCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCc
Q 013216 87 NPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165 (447)
Q Consensus 87 ~~~~~~ill~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~E 165 (447)
+++|+|+|+|||||||+++ +.|+.+||++.++ +|++||||++|||++++++|.|++.|.+.+.+++++|+|+|+++|
T Consensus 100 -~~~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~~-~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~E 177 (485)
T 3dlj_A 100 -PTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEV-DGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFIIEGME 177 (485)
T ss_dssp -TTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCG
T ss_pred -CCCCEEEEEeeecCCCCCCcccCCCCCCccEEE-CCEEEecccccCcHHHHHHHHHHHHHHHhCCCCCccEEEEEEccc
Confidence 3458999999999999986 7899999999997 999999999999999999999999999998888999999999999
Q ss_pred ccCcccCHHHHHcccc---ccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCC--ccCCCCCCCHHHHHHHH
Q 013216 166 EIGGHDGAEKFADSHV---FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPG--HGAKLYDNSAMENLFKS 240 (447)
Q Consensus 166 E~g~~~G~~~~~~~~~---~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~--Hs~~p~~gnai~~~~~~ 240 (447)
|+|+ .|++.+++++. ++++|++++++.+...+ ....++.+.+|..+++|+|+|+++ |+|. ...||+..+..+
T Consensus 178 E~g~-~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~g~~g~~~~~i~v~G~~~~~H~~~-~g~~a~~~~~~l 254 (485)
T 3dlj_A 178 EAGS-VALEELVEKEKDRFFSGVDYIVISDNLWISQ-RKPAITYGTRGNSYFMVEVKCRDQDFHSGT-FGGILHEPMADL 254 (485)
T ss_dssp GGTT-TTHHHHHHHHTTTTSTTCCEEEECCCBCCC---CCEEEEEECEEEEEEEEEESCSSCEETTT-STTSSCCHHHHH
T ss_pred ccCC-ccHHHHHHhhhhhcccCCCEEEEcCCCccCC-CCeeEEEeccceEEEEEEEEECCCCCcCCC-CCccccCHHHHH
Confidence 9986 69999998753 45678888887432211 235788899999999999999999 9987 222666666666
Q ss_pred HHHHHhchhhh-------------------HHHHHh------------cccc------------CCCcceeeeeeeecCC
Q 013216 241 IESVRRFRASQ-------------------FDLVKA------------GLKA------------EGEVVSVNMAFLKAGT 277 (447)
Q Consensus 241 i~~l~~~~~~~-------------------~~~~~~------------~~~~------------~~~~~t~~~~~i~~g~ 277 (447)
+..|+.+.... .+.+.. +... ....++++++.|++|.
T Consensus 255 ~~~l~~l~~~~g~i~ipg~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~i~gG~ 334 (485)
T 3dlj_A 255 VALLGSLVDSSGHILVPGIYDEVVPLTEEEINTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAF 334 (485)
T ss_dssp HHHHTTSBCTTSCBCSTTTTTTSCCCCHHHHHHHHTSCCCHHHHHHHHTCSCCSCSSHHHHHHHHHTSCEEEEEEEESSC
T ss_pred HHHHHhhCCCCCCEeCCCcccccCCCCHHHHHHHHhCCCCHHHHHHhcCCCcccccchHHHHHHHhcCCceEEEEEecCC
Confidence 66665553310 000000 0000 0014789999999883
Q ss_pred CCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCC--ceEeeccccccccccccCCCCcccccCCCC
Q 013216 278 PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRN--MTFELGQFKQRASLHDKFGRPILTATDSSN 353 (447)
Q Consensus 278 ~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 353 (447)
.++.+.|+||++|++.+++|+.+.++.+.+.++|+++++. ...+ .+++ ++. ...+|++ ..+.++
T Consensus 335 --~gp~a~NVIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~a~~~g~~~~~~---v~~------~~~~pp~-~~~~d~ 402 (485)
T 3dlj_A 335 --DEPGTKTVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMV---VSM------TLGLHPW-IANIDD 402 (485)
T ss_dssp --CSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCSSEEE---EEE------EEEECCE-ECCTTS
T ss_pred --cCCCCCceeCCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCeeEE---EEE------cCCCCce-eCCCCC
Confidence 1334899999999999999999999999999999988873 2233 3455 332 1233433 355577
Q ss_pred hHHHHHHHHHHHhcCCCCCceecCCCcch-HHHHH-cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013216 354 PWWNLLEEAVRKANGKLGKPEIFPASTDA-RYFRE-RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 431 (447)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~g~~D~-~~~~~-~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l 431 (447)
++++.+.+++++..+..+....+.|++|+ .+|.+ .++|.+.+|.+... ...|+|||+++++++..++++|+.++..+
T Consensus 403 ~~~~~~~~a~~~~~G~~~~~~~~ggs~Dfa~~~~~~~p~~~i~~g~g~~~-~~~H~p~E~i~~~~l~~g~~~l~~~l~~l 481 (485)
T 3dlj_A 403 TQYLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQEIVHKSVVLIPLGAVD-DGEHSQNEKINRWNYIEGTKLFAAFFLEM 481 (485)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEEESSCCHHHHHHHHHTC--CEECCCBCTT-CCTTSTTCEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceecCCCCchhHHHHHHHHhCCCEEEecCCCCC-CCCcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999964433233345678896 57765 46677766655321 36999999999999999999999999998
Q ss_pred Hhh
Q 013216 432 ASY 434 (447)
Q Consensus 432 ~~~ 434 (447)
+++
T Consensus 482 a~~ 484 (485)
T 3dlj_A 482 AQL 484 (485)
T ss_dssp HTC
T ss_pred hhc
Confidence 764
|
| >3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-51 Score=406.85 Aligned_cols=356 Identities=17% Similarity=0.187 Sum_probs=295.5
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEee----cCCCCeEEEEecCCCCCCCeEEEeecccc
Q 013216 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF----AKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~----~~~~~nl~~~~~g~~~~~~~ill~~H~Dt 101 (447)
+.+++++++++|++|||+| ++|.++++||.++|+++|++++.... ..+++|+++.++|++++.|+|+|+||||+
T Consensus 4 ~~~~~~~~l~~l~~~ps~s--~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~nv~a~~~g~~~~~~~v~l~aH~D~ 81 (373)
T 3gb0_A 4 NQERLVNEFMELVQVDSET--KFEAEICKVLTKKFTDLGVEVFEDDTMAVTGHGAGNLICTLPATKDGVDTIYFTSHMDT 81 (373)
T ss_dssp CHHHHHHHHHHHHTSCCBT--TCCHHHHHHHHHHHHHTTCEEEECSCHHHHCCSSCCEEEEECCSSTTCCCEEEEEECCB
T ss_pred CHHHHHHHHHHHhcccCCC--ccHHHHHHHHHHHHHHCCCEEEEeccccccCCCceeEEEEecCCCCCCCEEEEEEECcc
Confidence 6789999999999999985 78999999999999999998875432 12467999999886444699999999999
Q ss_pred CCCCCCCCCcCCCceeeCCCCcEEecCc----ccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHH
Q 013216 102 VPSEPSKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (447)
Q Consensus 102 vp~~~~~W~~~Pf~~~~~~~g~l~GrG~----~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (447)
||+++ ||.+..+ +|++||||+ +|||++++++|.+++.|.+.+. ++++|.|+|+++||.|+ .|++.+.
T Consensus 82 vp~~~------~~~p~~~-~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~~-~~~~v~~~~~~~EE~g~-~Ga~~~~ 152 (373)
T 3gb0_A 82 VVPGN------GIKPSIK-DGYIVSDGTTILGADDKAGLASMFEAIRVLKEKNI-PHGTIEFIITVGEESGL-VGAKALD 152 (373)
T ss_dssp CSSCS------SCCCEEE-TTEEECCSSSCCCHHHHHHHHHHHHHHHHHHHTTC-CCCCEEEEEESCGGGTS-HHHHHSC
T ss_pred cCCCC------CcCcEEE-CCEEECCCccccCcccHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccccCc-hhhhhhC
Confidence 99863 4556786 999999999 7999999999999999999875 68999999999999985 6999885
Q ss_pred ccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhHHHH
Q 013216 178 DSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLV 255 (447)
Q Consensus 178 ~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~~~~~~~~~~ 255 (447)
.+. + ..+++++++.+. + ...+.++.+|..+++|+++|+++|++ .|+.| ||+..+++++..|+...
T Consensus 153 ~~~-~-~~~~~~~~~~~~--~--~g~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nai~~~~~~i~~l~~~~------- 219 (373)
T 3gb0_A 153 RER-I-TAKYGYALDSDG--K--VGEIVVAAPTQAKVNAIIRGKTAHAGVAPEKGVSAITIAAKAIAKMPLGR------- 219 (373)
T ss_dssp GGG-C-CCSEEEEEEECS--C--TTEEEEEECEEEEEEEEEECBCCBTTTCGGGSBCHHHHHHHHHTTSCCEE-------
T ss_pred HHh-c-CCCEEEEEcCCC--C--CCeEEEcCCCcEEEEEEEEeEecCCCCChhhCcCHHHHHHHHHHhccccc-------
Confidence 432 3 357888887532 1 24688899999999999999999999 79999 99999999998876421
Q ss_pred HhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccc
Q 013216 256 KAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQ 333 (447)
Q Consensus 256 ~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~ 333 (447)
....++++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|+++++. ...+.+++ ++.
T Consensus 220 ------~~~~~~~~vg~i~gG~------~~Nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~g~~~~---i~~ 284 (373)
T 3gb0_A 220 ------IDSETTANIGRFEGGT------QTNIVCDHVQIFAEARSLINEKMEAQVAKMKEAFETTAKEMGGHAD---VEV 284 (373)
T ss_dssp ------EETTEEEEEEEEEECS------CTTBCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEE---EEE
T ss_pred ------CCCccccceeEEecCc------ccccccceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCeEE---EEE
Confidence 1123588999999886 999999999999999999999999999999888763 23455665 432
Q ss_pred cccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCcccc
Q 013216 334 RASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLN 413 (447)
Q Consensus 334 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~ 413 (447)
...+|++ ..++++++++.+.+++++++... .+..+.|++|+++|.+.|+|++.|||+.. ..|++||+++
T Consensus 285 ------~~~~~~~-~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~g~~D~~~~~~~gip~~~~g~~~~---~~H~~~E~i~ 353 (373)
T 3gb0_A 285 ------NVMYPGF-KFADGDHVVEVAKRAAEKIGRTP-SLHQSGGGSDANVIAGHGIPTVNLAVGYE---EIHTTNEKIP 353 (373)
T ss_dssp ------EEEECCE-ECCTTCHHHHHHHHHHHHTTCCC-EEEECSSCCHHHHHHHTTCCEEEEECCCB---STTSTTCEEE
T ss_pred ------ecccCCc-ccCCCCHHHHHHHHHHHHhCCCc-eEecccCcchHHHHHhCCCCEEEecCCCC---cCcCCceEEE
Confidence 2333443 34568999999999999976544 55566789999999999999999999864 5999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013216 414 QAEYLKGIDIYESIIKAY 431 (447)
Q Consensus 414 ~~~l~~~~~~~~~~l~~l 431 (447)
++++.+++++|+.++..+
T Consensus 354 ~~~l~~~~~~~~~~l~~l 371 (373)
T 3gb0_A 354 VEELAKTAELVVAIIEEV 371 (373)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999887
|
| >3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-51 Score=408.84 Aligned_cols=362 Identities=16% Similarity=0.197 Sum_probs=297.9
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEee----cCCCCeEEEEecCC--CCCCCeEEE
Q 013216 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF----AKNKPLILLKWPGS--NPQLPSILL 95 (447)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~----~~~~~nl~~~~~g~--~~~~~~ill 95 (447)
+.+.+.+++++++++|++|||+| ++|.++++||.++|+++|++++.... ..+.+||++.++|+ +++.|+|+|
T Consensus 18 ~~~~~~~~~~~~l~~L~~ips~s--~~E~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~nvia~~~g~~~~~~~~~i~l 95 (396)
T 3rza_A 18 QGMINEQRLLNTFLELVQIDSET--GNESTIQPILKEKFIALGLDVKEDEAAKHPKLGANNLVCTMNSTIEEGEVPKLYL 95 (396)
T ss_dssp -CCSCHHHHHHHHHHHHTSCCBT--TCTTTHHHHHHHHHHHTTCEEEECSGGGSTTCSSCCEEEEECCCCC---CCCEEE
T ss_pred EEeecHHHHHHHHHHHeecCCCC--cCHHHHHHHHHHHHHHCCCEEEEeccccccCCCCceEEEEECCcCCCCCCCeEEE
Confidence 56778999999999999999985 78899999999999999998875431 12467999999875 234689999
Q ss_pred eeccccCCCCCCCCCcCCCceeeCCC-CcEEecCc----ccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcc
Q 013216 96 NSHTDVVPSEPSKWSHHPFGAHLDSQ-GNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170 (447)
Q Consensus 96 ~~H~Dtvp~~~~~W~~~Pf~~~~~~~-g~l~GrG~----~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 170 (447)
+||||+||+++ +|.+..+ + |++||||+ +|||++++++|.|++.|.+.+. ++++|.|+|+++||.|+
T Consensus 96 ~aH~D~vp~g~------~~~p~~~-~~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~~-~~~~v~~~~~~~EE~g~- 166 (396)
T 3rza_A 96 TSHMDTVVPAI------NVKPIVK-DDGYIYSDGTTILGADDKAGLAAMLEVLQVIKEQQI-PHGQIQFVITVGEESGL- 166 (396)
T ss_dssp EEECCBCSSCS------SCCCEEC-TTSEEECCSSSCCCHHHHHHHHHHHHHHHHHHHHTC-CCCCEEEEEESCGGGTS-
T ss_pred EEECCccCCCC------CcceEEe-cCCEEECCCccccCcccHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEccccccc-
Confidence 99999999873 3444665 6 99999999 7999999999999999998875 67999999999999985
Q ss_pred cCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchh
Q 013216 171 DGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRA 249 (447)
Q Consensus 171 ~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~ 249 (447)
.|++.+..++ ++ .+++++++.+. + ...+.++.+|..+++|+++|+++|+|.|+.| ||+..+++++..|+....
T Consensus 167 ~Ga~~~~~~~-~~-~~~~~~~~~~~--~--~g~i~~~~~g~~~~~i~v~G~~~Ha~~p~~g~nai~~~~~~i~~l~~~~~ 240 (396)
T 3rza_A 167 IGAKELNSEL-LD-ADFGYAIDASA--D--VGTTVVGAPTQMLISAKIIGKTAHASTPKEGVSAINIAAKAISRMKLGQV 240 (396)
T ss_dssp HHHHHCCGGG-CC-CSEEEEEEESS--C--TTCEEEEECEEEEEEEEEECBCCBTTSGGGSBCHHHHHHHHHHHSCCEEE
T ss_pred HhHhhhchhh-cc-cceEEEEecCC--C--cceEEEcCCceEEEEEEEEeEecCCCCccccccHHHHHHHHHHhcccCCC
Confidence 6999886543 32 47888887532 2 2468889999999999999999999999999 999999999998865211
Q ss_pred hhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEe
Q 013216 250 SQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFE 327 (447)
Q Consensus 250 ~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~ 327 (447)
...++++++.+++|. +.|+||++|++.+|+|+.+.++.+.+.++|+++++. ..++.+++
T Consensus 241 -------------~~~~~~~vg~i~gG~------~~NvIP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~~a~~~g~~~~ 301 (396)
T 3rza_A 241 -------------DEITTANIGKFHGGS------ATNIVADEVILEAEARSHDPERIKTQVKHMTDVFETTASELGGKAE 301 (396)
T ss_dssp -------------ETTEEEEEEEEEECS------CTTBCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred -------------CCCceeeeeEEecCC------CCcccCceEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 123688999999886 999999999999999999999999999999888763 23555665
Q ss_pred eccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCC
Q 013216 328 LGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHD 407 (447)
Q Consensus 328 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~ 407 (447)
++. ...+|++ .+++++++++.+.+++++++... .+..+.|++|+++|...|+|++.|||+.. ..|+
T Consensus 302 ---i~~------~~~~p~~-~~~~d~~l~~~~~~~~~~~g~~~-~~~~~~g~tD~~~~~~~giP~~~~g~g~~---~~H~ 367 (396)
T 3rza_A 302 ---VTV------EQSYPGF-KINDNEAVVKIAQESARNLGLSA-NTIISGGGSDGSIINTFGIPSVILGVGYE---KIHT 367 (396)
T ss_dssp ---EEE------EEEECCE-ECCTTSHHHHHHHHHHHHTTCCC-CEEECSSCCHHHHHGGGTCCEEEEECCCB---STTS
T ss_pred ---EEE------EeccCCc-ccCCCcHHHHHHHHHHHHcCCCc-eecccceeccHHHHhhCCCcEEEECCCCC---CCCC
Confidence 442 2334443 34668999999999999986544 55667799999999999999999999864 5999
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 408 HNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 408 ~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
+||+++++++.+++++|+.++..+++
T Consensus 368 ~~E~v~~~~l~~~~~~~~~~~~~l~~ 393 (396)
T 3rza_A 368 TNERMPIKSLNLLASQVLEIIKIVAR 393 (396)
T ss_dssp TTCEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceeEHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
|
| >2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-51 Score=417.98 Aligned_cols=392 Identities=16% Similarity=0.243 Sum_probs=303.2
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCC----ChhHHHHHHHHHHHHCCCceEEEeec-----CCC-----CeEEEEecCCCC
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFA-----KNK-----PLILLKWPGSNP 88 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s~~~----~e~~~~~~i~~~l~~~G~~~~~~~~~-----~~~-----~nl~~~~~g~~~ 88 (447)
.+.+.+++++++++|++|||+|+.. ++.++++||.++|+++|++++..+.. .++ +||++.+++. +
T Consensus 15 ~~~~~~~~~~~l~~l~~~ps~s~~e~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~v~a~~~~~-~ 93 (479)
T 2zog_A 15 IDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLPPILLGKLGSD-P 93 (479)
T ss_dssp HHHTHHHHHHHHHHHHHSCCBTTCGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCEEECTTSCEEECCCEEEEEECCC-T
T ss_pred HHHhHHHHHHHHHHHhcCCCccCCcccchHHHHHHHHHHHHHHHcCCeEEEeeccccccCCCcccCCCCEEEEEecCC-C
Confidence 3456789999999999999997321 23789999999999999988765421 234 7999999654 3
Q ss_pred CCCeEEEeeccccCCCCC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCccc
Q 013216 89 QLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (447)
Q Consensus 89 ~~~~ill~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (447)
.+|+|+|+|||||||.++ +.|+++||.+.++ ||++||||++|||++++++|.|++.|.+.+.+++++|+|+|+++||.
T Consensus 94 ~~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~~-~g~l~grGa~D~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~ 172 (479)
T 2zog_A 94 QKKTVCIYGHLDVQPAALEDGWDSEPFTLVER-EGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLRFCLEGMEES 172 (479)
T ss_dssp TSCEEEEEEECCBCCCCGGGTCSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGG
T ss_pred CCCeEEEEEecCCCCCCccccCcCCCCcceeE-CCEEEeeccccChHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccccc
Confidence 458999999999999986 7899999999997 99999999999999999999999999999888889999999999999
Q ss_pred CcccCHHHHHccc---cccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecC--CccCCCCCCCHHHHHHHHHH
Q 013216 168 GGHDGAEKFADSH---VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAP--GHGAKLYDNSAMENLFKSIE 242 (447)
Q Consensus 168 g~~~G~~~~~~~~---~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~--~Hs~~p~~gnai~~~~~~i~ 242 (447)
|+ .|++.++++. .+.++|++++++.+...++ ...++++.+|..+++|+++|++ +|||.+ ..||+..+++++.
T Consensus 173 g~-~Ga~~~~~~~~~~~~~~~d~~i~~e~~~~~~~-~~~i~~~~~G~~~~~i~v~G~~~~~Hs~~~-g~~ai~~~~~~i~ 249 (479)
T 2zog_A 173 GS-EGLDELIFAQKDKFFKDVDYVCISDNYWLGKN-KPCITYGLRGICYFFIEVECSDKDLHSGVY-GGSVHEAMTDLIS 249 (479)
T ss_dssp TC-TTHHHHHHHTTTTTTTTCCEEEECCCBCSSSS-SCEEEEEECEEEEEEEEEECCSSCEEHHHH-TTTSCCHHHHHHH
T ss_pred CC-ccHHHHHHhhhhhhcccCCEEEEeCCCcCCCC-CeEEEEecceEEEEEEEEEeCCCCCccCCC-CCCccCHHHHHHH
Confidence 86 6999999865 3345788888876543232 3578899999999999999998 999985 2389988899888
Q ss_pred HHHhchhhh-------------------HHH----------HHh--cccc---------C---CCcceeeeeeeecCCCC
Q 013216 243 SVRRFRASQ-------------------FDL----------VKA--GLKA---------E---GEVVSVNMAFLKAGTPS 279 (447)
Q Consensus 243 ~l~~~~~~~-------------------~~~----------~~~--~~~~---------~---~~~~t~~~~~i~~g~~~ 279 (447)
.|+.+.... .+. +.. +... . ...++++++.|++|.
T Consensus 250 ~l~~l~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~i~gg~-- 327 (479)
T 2zog_A 250 LMGCLVDKKGKILIPGINDAVAPVTDEEHALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHGIEGAF-- 327 (479)
T ss_dssp HHTTSBCTTSCBCSTTTTTTSCCCCHHHHHHTSSCCCCHHHHHHHHTCSSCSCSSHHHHHHHHHTSCEEEEEEEESSC--
T ss_pred HHHhcCCCCCCEecCchhccCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccccchHHHHHHhhcCCCeEEeeeecCC--
Confidence 887654320 000 000 0000 0 013688999999873
Q ss_pred CCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC--C--CCceEeeccccccccccccCCCCcccccCCCChH
Q 013216 280 PNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--S--RNMTFELGQFKQRASLHDKFGRPILTATDSSNPW 355 (447)
Q Consensus 280 ~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 355 (447)
.|+.+.|+||++|++.+++|+.|.++.+.+.++|+++++.. . .+.+++ ++. ...+|++ .++.++++
T Consensus 328 ~g~~~~NvIP~~a~~~~~~R~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~---~~~------~~~~p~~-~~~~d~~~ 397 (479)
T 2zog_A 328 SGSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFK---VYM------GHGGKPW-VSDFNHPH 397 (479)
T ss_dssp CSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCSEEE---EEE------EEEECCE-ECCTTSHH
T ss_pred cCCCCccccCCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhccCCCceEE---EEe------cCCCCce-ecCCCCHH
Confidence 23348999999999999999999999999999998887631 1 133444 331 1233443 35668999
Q ss_pred HHHHHHHHHHhcCCCCCceecCCCcch-HHHHHc-CCCeEEE--ccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013216 356 WNLLEEAVRKANGKLGKPEIFPASTDA-RYFRER-GLPAIGF--SPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 431 (447)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~g~~D~-~~~~~~-g~p~~~~--gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l 431 (447)
++.+.++++++.+..+......|++|+ ++|.+. ++|++.+ ||+.. ..|++||+++++++.+++++|+.++..+
T Consensus 398 ~~~~~~a~~~~~g~~~~~~~~~gs~d~~~~~~~~~~~p~~~~g~g~~~~---~~H~~~E~i~~~~l~~~~~~~~~~~~~~ 474 (479)
T 2zog_A 398 YQAGRRALKTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPVGSADD---GAHSQNEKLNRLNYIEGTKMLAAYLYEV 474 (479)
T ss_dssp HHHHHHHHHHHHSSCCEEEEESSCCTHHHHHHHHHCSEEEECCCBCTTC---CTTSTTCEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceecCCCCccchHHHHHHHhCCCEEEecCCCCcc---CCCCCCCcEeHHHHHHHHHHHHHHHHHH
Confidence 999999999974433233345688997 577664 8998875 55432 6999999999999999999999999998
Q ss_pred Hhh
Q 013216 432 ASY 434 (447)
Q Consensus 432 ~~~ 434 (447)
++.
T Consensus 475 ~~~ 477 (479)
T 2zog_A 475 SQL 477 (479)
T ss_dssp HHC
T ss_pred Hhh
Confidence 764
|
| >3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=400.79 Aligned_cols=352 Identities=18% Similarity=0.220 Sum_probs=283.8
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~ 105 (447)
.+++++++++|++|||+| ++|.+++++|.++|+++|++ .+... ..+|+++.+++. ..|+|+|+|||||||++
T Consensus 12 ~~~~~~~~~~l~~~ps~s--~~e~~~~~~l~~~l~~~G~~~~~~~~---~~~~~~a~~~~~--~~~~v~l~~H~D~vp~~ 84 (369)
T 3tx8_A 12 LGDPIVLTQRLVDIPSPS--GQEKQIADEIEDALRNLNLPGVEVFR---FNNNVLARTNRG--LASRVMLAGHIDTVPIA 84 (369)
T ss_dssp CSCHHHHHHHHHSSCCBT--TCTHHHHHHHHHHHHTTTCTTCEEEE---ETTEEEEECCCC--CSCEEEEEEECCBSCCC
T ss_pred HHHHHHHHHHHhcCCCCC--ccHHHHHHHHHHHHHhcCCCCcEEec---cCCcEEEEecCC--CCCeEEEEcccCccCCC
Confidence 567899999999999985 78999999999999999984 44333 235899999765 35899999999999987
Q ss_pred CCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcc-cCHHHHHcccc-cc
Q 013216 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH-DGAEKFADSHV-FN 183 (447)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-~G~~~~~~~~~-~~ 183 (447)
+ ||.+..+ +|++||||++|||++++++|.|++.|++. ..++++|+|+|+++||+|+. .|++.+++++. ..
T Consensus 85 ~------~~~~~~~-~g~~~g~G~~D~K~~~a~~l~a~~~l~~~-~~~~~~v~~~~~~~EE~g~~~~G~~~~~~~~~~~~ 156 (369)
T 3tx8_A 85 D------NLPSRVE-DGIMYGCGTVDMKSGLAVYLHTFATLATS-TELKHDLTLIAYECEEVADHLNGLGHIRDEHPEWL 156 (369)
T ss_dssp S------CCSCEEC-SSEEESSSTTTTHHHHHHHHHHHHHHTSC-TTCCSEEEEEEECCCSSCTTSCHHHHHHHHCGGGG
T ss_pred C------CCCCeEE-CCEEEcCCcccchHHHHHHHHHHHHHHhh-cCCCccEEEEEEeccccCcccccHHHHHHhccccc
Confidence 4 6778887 99999999999999999999999999864 36789999999999999852 49999988651 22
Q ss_pred CCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccC
Q 013216 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (447)
Q Consensus 184 ~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 262 (447)
+.+++++.+ |+. ..++.+.+|..+++|+++|+++|+|.|+.| ||+..+++++..|+.+.....+ ....
T Consensus 157 ~~~~~i~~e-----p~~-~~i~~~~~G~~~~~i~v~G~~~Ha~~p~~g~nAi~~~a~~i~~l~~~~~~~~~-----~~~~ 225 (369)
T 3tx8_A 157 AADLALLGE-----PTG-GWIEAGCQGNLRIKVTAHGVRAHSARSWLGDNAMHKLSPIISKVAAYKAAEVN-----IDGL 225 (369)
T ss_dssp CCSEEEECC-----CCT-TCEEESBCEEEEEEEEEECBCCBTTSGGGSBCTGGGGHHHHHHHHHCCCCEEE-----ETTE
T ss_pred CCCEEEEeC-----CCC-CceeeecceEEEEEEEEeeeccccCCCCcCcCHHHHHHHHHHHHHhhcccccc-----cCCc
Confidence 457777664 443 578889999999999999999999999988 9999999999999876432100 0000
Q ss_pred CCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccC-CCCceEeeccccccccccccC
Q 013216 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA-SRNMTFELGQFKQRASLHDKF 341 (447)
Q Consensus 263 ~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 341 (447)
...++++++.+++|. +.|+||++|++.+|+|+++.++.+++.++|+++++.. .++++++ +. .
T Consensus 226 ~~~~~~~vg~i~gG~------~~NvIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~g~~~~---~~--------~ 288 (369)
T 3tx8_A 226 TYREGLNIVFCESGV------ANNVIPDLAWMNLNFRFAPNRDLNEAIEHVVETLELDGQDGIEWA---VE--------D 288 (369)
T ss_dssp EEECEEEEEEEEECS------BTTBCCSEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSTTEEEE---EE--------E
T ss_pred ccCceEEEEEEECCC------CCccccCcEEEEEEEecCCCCCHHHHHHHHHHHHHhcccCCeEEE---EE--------e
Confidence 013589999999887 9999999999999999999999999999999888742 2455555 42 1
Q ss_pred CCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHH
Q 013216 342 GRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGI 421 (447)
Q Consensus 342 ~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~ 421 (447)
..+.+ +...++|+++.+.+++ +.. .+....|++|+++|.+.|+|++.|||+... ..|++||+++++++.+++
T Consensus 289 ~~~~~-~~~~~~~~~~~~~~~~---g~~--~~~~~~ggtD~~~~~~~giP~~~~Gpg~~~--~~H~~~E~v~~~~l~~~~ 360 (369)
T 3tx8_A 289 GAGGA-LPGLGQQVTSGLIDAV---GRE--KIRAKFGWTDVSRFSAMGIPALNFGAGDPS--FAHKRDEQCPVEQITDVA 360 (369)
T ss_dssp EECCB-CCCTTSHHHHHHHHHH---CGG--GEEECCSCCTHHHHHTTTCCEEEECSSCSS--SSSCTTCEEEHHHHHHHH
T ss_pred cCCCC-CCCCCCHHHHHHHHHc---CCC--CCcccccccchHHHhhCCCCEEEECCCChh--hCCCCCcEEEHHHHHHHH
Confidence 12222 2455788888877663 321 234556889999999999999999998653 699999999999999999
Q ss_pred HHHHHHHH
Q 013216 422 DIYESIIK 429 (447)
Q Consensus 422 ~~~~~~l~ 429 (447)
++|+.++.
T Consensus 361 ~~l~~~l~ 368 (369)
T 3tx8_A 361 AILKQYLS 368 (369)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999875
|
| >2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=408.12 Aligned_cols=348 Identities=20% Similarity=0.248 Sum_probs=286.6
Q ss_pred hhHHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCC-CCCCCeEEEeeccccCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS-NPQLPSILLNSHTDVVPS 104 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~-~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~-~~~~~~ill~~H~Dtvp~ 104 (447)
.+++++++++|++|||+|+. ++|.+++++|.++|+++|++++... .|+++.++|. +++.|+|+|++||||||.
T Consensus 5 ~~~~~~~l~~l~~ips~s~~~~~e~~~~~~l~~~l~~~G~~~~~~~-----~~~~~~~~~~~~~~~~~i~l~aH~D~vp~ 79 (364)
T 2rb7_A 5 MQHIVELTSDLIRFPSMHSRPEQISRCAGFIMDWCAQNGIHAERMD-----HDGIPSVMVLPEKGRAGLLLMAHIDVVDA 79 (364)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTTCCCEEEE-----ETTEEEEEECSBTTEEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHcCCeEEEec-----CCCceEEEEEcCCCCCeEEEECccCcCCC
Confidence 57899999999999999743 4688999999999999999987542 3688888642 224589999999999985
Q ss_pred CCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCC---cee--EEEEeecCcccCcccCHHHHHcc
Q 013216 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP---VRS--VYLSFVPDEEIGGHDGAEKFADS 179 (447)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~---~~~--i~~~~~~~EE~g~~~G~~~~~~~ 179 (447)
+.+||.+.++ +|++||||++|||++++++|.|++.|.+.+.++ +++ |.|+|+++||.++..|++.++++
T Consensus 80 -----~~~p~~~~~~-~g~~~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~~g~~~v~~~~~~~EE~~g~~G~~~~~~~ 153 (364)
T 2rb7_A 80 -----EDDLFVPRVE-NDRLYGRGANDDKYAVALGLVMFRDRLNALKAAGRSQKDMALGLLITGDEEIGGMNGAAKALPL 153 (364)
T ss_dssp -----CGGGGSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCGGGTSTTTHHHHGGG
T ss_pred -----CCCCCccEEE-CCEEEecccccccHHHHHHHHHHHHHHHhCCCCcccCCCccEEEEEEeccccCchhhHHHHHhc
Confidence 5789999997 999999999999999999999999999876555 568 99999999998555799999887
Q ss_pred ccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhc
Q 013216 180 HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (447)
Q Consensus 180 ~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~ 258 (447)
+ +.|+++++|.+ +|++ ++.+.+|..+++|+++|+++|++.|+.| ||+..+++++..|+.+.+ ..
T Consensus 154 ~---~~d~~i~~d~~--~p~~---i~~~~~G~~~~~i~v~G~~~Ha~~P~~g~nAi~~~~~~i~~l~~~~~-------~~ 218 (364)
T 2rb7_A 154 I---RADYVVALDGG--NPQQ---VITKEKGIIDIKLTCTGKAAHGARPWMGVNAVDLLMEDYTRLKTLFA-------EE 218 (364)
T ss_dssp C---EEEEEEECSSS--BTTE---EEEEECEEEEEEEEEECBCEETTSGGGSBCHHHHHHHHHHHHHTTSC-------CC
T ss_pred C---CCCEEEEccCC--cccc---eEEEeeeEEEEEEEEEeecccCCCCCCCcCHHHHHHHHHHHHHhhcc-------ch
Confidence 5 45788887754 4543 8889999999999999999999999988 999999999999987521 00
Q ss_pred cccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeecccccccccc
Q 013216 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLH 338 (447)
Q Consensus 259 ~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (447)
.. ....++++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|+++++. +++ ..
T Consensus 219 ~~-~~~~~~~~vg~i~gG~------~~NviP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~-----~v~---~~------ 277 (364)
T 2rb7_A 219 NE-DHWHRTVNLGRIRAGE------STNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSG-----TVS---IV------ 277 (364)
T ss_dssp CT-TCCSCEEEEEEEEECS------CTTEECSEEEEEEEEEECTTSCHHHHHHHHHHHCSS-----EEE---EE------
T ss_pred hh-cCCCceEEEEEEecCC------cCcccCcceEEEEEEeeCCCCCHHHHHHHHHHHhhh-----hEE---ec------
Confidence 00 0024689999999987 899999999999999999999999999999988863 333 11
Q ss_pred ccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHH
Q 013216 339 DKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYL 418 (447)
Q Consensus 339 ~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~ 418 (447)
...|. ..+.++++++.+.++++..+ . ...|++|+++|...++|++.|||+... ..|++||+++++++.
T Consensus 278 --~~~~~--~~~~~~~l~~~~~~~~~~~g----~--~~~g~~D~~~~~~~~~p~v~~Gp~~~~--~~H~~~E~i~~~~l~ 345 (364)
T 2rb7_A 278 --RTVPV--FLAADSPYTERLLALSGATA----G--KAHGASDARYLGENGLTGVVWGAEGFN--TLHSRDECLHIPSLQ 345 (364)
T ss_dssp --EEECC--EECCCCHHHHHHHHHHCCEE----E--EESSCCGGGGTGGGTCCEEECCCCCTT--CTTSTTCEEETTHHH
T ss_pred --cCCcc--ccCCCCHHHHHHHHHHHhcC----C--CCCCCchHHHHHhcCCCEEEECCCCcc--ccCCCCccccHHHHH
Confidence 22333 34557799999999887332 1 257889999999888999999998651 249999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 013216 419 KGIDIYESIIKAYAS 433 (447)
Q Consensus 419 ~~~~~~~~~l~~l~~ 433 (447)
+++++|+.++..++.
T Consensus 346 ~~~~~~~~~~~~~~~ 360 (364)
T 2rb7_A 346 SIYDPLMQLAREMEE 360 (364)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998864
|
| >1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-51 Score=409.68 Aligned_cols=370 Identities=17% Similarity=0.149 Sum_probs=281.0
Q ss_pred CCCh--hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeecccc
Q 013216 24 AKSD--DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (447)
Q Consensus 24 ~~~~--~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dt 101 (447)
+.+. +++++++++|++|||+| ++|.+++++|.++|+++|++++..+ +.+|++++++|.++ |+|+|+|||||
T Consensus 22 ~~~~~~~~~i~~~~~l~~ips~s--~~e~~~~~~l~~~l~~~G~~v~~~~---~~~~l~a~~~~~~~--~~i~l~aH~D~ 94 (418)
T 1xmb_A 22 KSPEVFDWMVKIRRKIHENPELG--YEELETSKLIRSELELIGIKYRYPV---AITGVIGYIGTGEP--PFVALRADMDA 94 (418)
T ss_dssp HSHHHHHHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHHHHTCCEEEEE---TTTEEEEEEESSSS--CEEEEEEECCC
T ss_pred HhhhcHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCeeEecc---CCcEEEEEEcCCCC--CEEEEEecccc
Confidence 3456 88999999999999986 7899999999999999999987543 45699999986543 89999999999
Q ss_pred CCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcccc
Q 013216 102 VPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (447)
Q Consensus 102 vp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (447)
||.++ |+.+||.+. + +|++||||+ |++++++|.|++.|.+.+.+++++|+|+|+++|| |+ .|++.+++++.
T Consensus 95 vp~~~--~~~~pf~~~-~-~g~~~g~G~---d~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE-g~-~G~~~~~~~g~ 165 (418)
T 1xmb_A 95 LPIQE--GVEWEHKSK-I-AGKMHACGH---DGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEE-GL-SGAKKMREEGA 165 (418)
T ss_dssp BSCCC--CCCSTTCCS-S-TTCBCCSSH---HHHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTT-TT-CHHHHHHHTTT
T ss_pred cCCCC--CCCCCcccC-C-CCceEeCCc---hHHHHHHHHHHHHHHhccccCCceEEEEEecccc-cc-ccHHHHHHcCC
Confidence 99874 999999974 4 899999995 6999999999999999887789999999999999 75 79999998876
Q ss_pred ccCCceEEEEecCCcCcCCcc--eeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhc
Q 013216 182 FNSLNVGIVLDEGLASTTEDY--RAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (447)
Q Consensus 182 ~~~~~~~~~~d~g~~~p~~~~--~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~ 258 (447)
++++|..++++.....|++.. .+..+.+|..+++|+++|+++|+|.|+.| ||+..+++++..|+.+.....+
T Consensus 166 ~~~~d~~i~~~~~~~~~~g~~~~~~~~~~~g~~~~~i~v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~----- 240 (418)
T 1xmb_A 166 LKNVEAIFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETD----- 240 (418)
T ss_dssp TTTEEEEEEEEEEEEEETTCEEECSEEEECEEEEEEEEEEEC---------CCHHHHHHHHHHHHHHTTCBCCSS-----
T ss_pred cCCCCEEEEEecCCCCCCceeEeeeccccccceeEEEEEEecCcccCCCccCCCHHHHHHHHHHHHHHHHhcccC-----
Confidence 655677777654322454432 44567899999999999999999999998 9999999999999876422110
Q ss_pred cccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeecccccccc
Q 013216 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRAS 336 (447)
Q Consensus 259 ~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~ 336 (447)
....++++++.+++|. +.|+||++|++.+|+|+.+ +.+++.++|+++++. ...+++++ ++.
T Consensus 241 ---~~~~~t~~vg~i~gG~------~~NvIP~~a~~~~diR~~~--~~~~i~~~i~~~~~~~a~~~g~~~~---~~~--- 303 (418)
T 1xmb_A 241 ---PLDSKVVTVSKVNGGN------AFNVIPDSITIGGTLRAFT--GFTQLQQRVKEVITKQAAVHRCNAS---VNL--- 303 (418)
T ss_dssp ---GGGCEEEEEEEEC--------------CCEEEEEEEEEESS--CHHHHHHHHHHHHHHHHHHTTEEEE---EES---
T ss_pred ---CCCCcEEEEEEEEecC------cCCcCCCeEEEEEEEccCc--HHHHHHHHHHHHHHHHHHHhCCeEE---EEE---
Confidence 1123588999999887 9999999999999999999 899999999988863 22456666 431
Q ss_pred ccccCC-CCcccccCCCChHHHHHHHHHHHhcCCCC--CceecCCCcchHHHHHcCCCeE--EEccCCCC--CCCCCCCC
Q 013216 337 LHDKFG-RPILTATDSSNPWWNLLEEAVRKANGKLG--KPEIFPASTDARYFRERGLPAI--GFSPMANT--PILLHDHN 409 (447)
Q Consensus 337 ~~~~~~-~p~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~g~~D~~~~~~~g~p~~--~~gp~~~~--~~~~H~~~ 409 (447)
... .|+++++..++++++.+.++++++.+..+ .+....|++|+++|... +|++ .|||+..+ ....|++|
T Consensus 304 ---~~~~~~p~~~~~~d~~l~~~~~~~~~~~~g~~~~~~~~~~~g~tD~~~~~~~-~P~~~~~~G~~~~~~~~~~~H~~~ 379 (418)
T 1xmb_A 304 ---TPNGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAAPVMGSEDFSYFAET-IPGHFSLLGMQDETNGYASSHSPL 379 (418)
T ss_dssp ---SGGGCCCBCCEEECHHHHHHHHHHHHHHHCGGGEEECCCBCCCCTHHHHHTT-SCEEEEEEEEECTTCCSCCTTCTT
T ss_pred ---ccCCcccCCCccCCHHHHHHHHHHHHHhcCCcceeccCCCCCcchHHHHHHH-CCEEEEEEeCCCCCCCCCCCCCCC
Confidence 122 22233456689999999999999644321 23456799999999876 8974 57886421 13689999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc
Q 013216 410 EFLNQAEYLKGIDIYESIIKAYASYV 435 (447)
Q Consensus 410 E~v~~~~l~~~~~~~~~~l~~l~~~~ 435 (447)
|+++++++.+++++|+.++..+++..
T Consensus 380 E~i~~~~l~~~~~~~~~~~~~l~~~~ 405 (418)
T 1xmb_A 380 YRINEDVLPYGAAIHASMAVQYLKEK 405 (418)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987644
|
| >3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=415.64 Aligned_cols=360 Identities=17% Similarity=0.174 Sum_probs=290.8
Q ss_pred ChhHHHHHHHhhhcccCCCCCC--------ChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCCCC-CCCeEEE
Q 013216 26 SDDSIIERFRAYLQIDTSQPNP--------DYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNP-QLPSILL 95 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~--------~e~~~~~~i~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~~~-~~~~ill 95 (447)
..++++++|++|++|||+|+.+ +|.++++||.++|+++|++ ++. + ..+||+++++|+++ +.|+|+|
T Consensus 25 ~~~~~~~~l~~lv~i~s~s~~~~~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~-d---~~~nv~a~~~g~~~~~~~~v~l 100 (434)
T 3ife_A 25 MKEELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTM-D---DNGYVMATLPANTDKDVPVIGF 100 (434)
T ss_dssp HHHHHHHHHHHHHTSCCBCCTTCCSSSSSHHHHHHHHHHHHHHHHHTCEEEEE-C---TTSCEEEEECCBSSSCCCCEEE
T ss_pred HHHHHHHHHHhhEEeeccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCceEEE-C---CCcEEEEEeCCCCCCCCCeEEE
Confidence 3578999999999999997532 5789999999999999997 653 3 45699999988753 4689999
Q ss_pred eeccccCCCCCCCCCcCCCceeeC---------------------------CCCcEEecCc----ccchhHHHHHHHHHH
Q 013216 96 NSHTDVVPSEPSKWSHHPFGAHLD---------------------------SQGNIFARGS----QDMKCVGMQYLEAIR 144 (447)
Q Consensus 96 ~~H~Dtvp~~~~~W~~~Pf~~~~~---------------------------~~g~l~GrG~----~D~k~~~a~~l~a~~ 144 (447)
+|||||||.. +.|..+||..... .+++|||||+ +|||++++++|.|++
T Consensus 101 ~~H~DtVp~~-~~~~~~p~~~~~~dg~~i~l~~~~~~~~~~~~~~~~~~~~g~~~i~grG~t~~~~D~K~gva~~l~a~~ 179 (434)
T 3ife_A 101 LAHLDTATDF-TGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPELPSYKGHTIITTDGTTLLGADDKAGLTEIMVAMN 179 (434)
T ss_dssp EEECCBCTTS-CCSSCCCEEETTCCSSCEEEETTTTEEECTTTCTTGGGGTTSCEEECCSSSCCCHHHHHHHHHHHHHHH
T ss_pred EEEcccCCCC-CCCCCccEEeecCCCCceecccccccccChhhChhHHhhcCCcEEECCCccchhhhhHHHHHHHHHHHH
Confidence 9999999975 4799999975421 0269999998 999999999999999
Q ss_pred HHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCc
Q 013216 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGH 224 (447)
Q Consensus 145 ~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~H 224 (447)
.|.+.+..++++|.|+|+++||+| .|++.+.. ..+ ++|+++++|.+ + ...++++.+|..+++|+++|+++|
T Consensus 180 ~L~~~~~~~~~~i~~if~~~EE~g--~Ga~~~~~-~~~-~~d~~~~~d~~---~--~g~i~~~~~G~~~~~i~v~G~~~H 250 (434)
T 3ife_A 180 YLIHNPQIKHGKIRVAFTPDEEIG--RGPAHFDV-EAF-GASFAYMMDGG---P--LGGLEYESFNAAGAKLTFNGTNTH 250 (434)
T ss_dssp HHHTCTTSCBCCEEEEEESCGGGT--CTGGGCCH-HHH-CCSEEEECCCC---S--TTEEECCBCEEEEEEEEEECBCCC
T ss_pred HHHhCCCCCCCCEEEEEECCcccC--hHHHHhhh-hhc-CCCEEEEecCC---C--CCceeecCCCeEEEEEEEEEEecC
Confidence 999988788999999999999987 48887743 234 46888888742 2 236888999999999999999999
Q ss_pred cC-CCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCC
Q 013216 225 GA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPP 302 (447)
Q Consensus 225 s~-~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~ 302 (447)
+| .|+.+ ||+..+++++..|+.+... ..++.+++.+++| ..|+||++|++.+|+|+.+
T Consensus 251 ag~~P~~g~nAi~~aa~~i~~l~~~~~~-------------~~~~~~~g~i~~g-------~~n~iP~~a~~~~diR~~~ 310 (434)
T 3ife_A 251 PGTAKNKMRNATKLAMEFNGHLPVEEAP-------------EYTEGYEGFYHLL-------SLNGDVEQSKAYYIIRDFD 310 (434)
T ss_dssp GGGCTTTCBCHHHHHHHHHHTSCTTCSG-------------GGCCTTCCEEEEE-------EEEECSSEEEEEEEEEESS
T ss_pred CCCCcccchhHHHHHHHHHHhcccccCC-------------CcceeeeEEEEee-------eEeEecCeEEEEEEEecCC
Confidence 87 69988 9999999999988765211 0123445556655 6899999999999999999
Q ss_pred CCCHHHHHHHHHHHhccC--CCC---ceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecC
Q 013216 303 TTDAESLERRIVEEWAPA--SRN---MTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFP 377 (447)
Q Consensus 303 ~~~~~~i~~~i~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (447)
.++.+++.++|+++++.. ..+ ++++ +. ..+.|.+..+.+++++++.+++++++++... .+..+.
T Consensus 311 ~~~~~~i~~~i~~~~~~~~~~~g~~~~~v~---~~-------~~~~~~~~~~~~d~~l~~~~~~a~~~~G~~~-~~~~~~ 379 (434)
T 3ife_A 311 RKNFEARKNTIENIVKQMQEKYGQDAVVLE---MN-------DQYYNMLEKIEPVREIVDIAYEAMKSLNIEP-NIHPIR 379 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGEEEE---EE-------EEECCTHHHHGGGTHHHHHHHHHHHHTTCCC-EECCBS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEEE---Ee-------ecccchhccccCCHHHHHHHHHHHHHhCCCC-EEeecc
Confidence 999999999999888631 223 4444 32 1233332245678999999999999966543 445567
Q ss_pred CCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 378 ASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 378 g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
|++|+++|...|+|++.|||+.. ..|+|||+++++++.+++++|+.++..+++
T Consensus 380 ggtD~~~~~~~GiP~~~~g~g~~---~~H~~~E~i~~~~l~~~~~~~~~~l~~la~ 432 (434)
T 3ife_A 380 GGTDGSQLSYMGLPTPNIFTGGE---NYHGKFEYVSVDVMEKAVQVIIEIARRFEE 432 (434)
T ss_dssp SCCHHHHHHHTTCCCCEECCSEE---STTSTTCEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHhhCCCcEEEeCCCCC---CCcCCceeecHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999865 599999999999999999999999999875
|
| >1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-51 Score=409.11 Aligned_cols=364 Identities=16% Similarity=0.156 Sum_probs=280.4
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC
Q 013216 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~ 105 (447)
..+++++++++|++|||+| ++|.++++||.++|+++|++++..+. +++|+++.++|.++ .|+|+|+|||||||.+
T Consensus 30 ~~~~~i~~~~~l~~ips~s--~~e~~~~~~l~~~l~~~G~~v~~~~~--~~~nv~a~~~g~~~-~~~i~l~~H~D~vp~~ 104 (404)
T 1ysj_A 30 FHTRLINMRRDLHEHPELS--FQEVETTKKIRRWLEEEQIEILDVPQ--LKTGVIAEIKGRED-GPVIAIRADIDALPIQ 104 (404)
T ss_dssp HHHHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHHHTTCEECCCTT--CSSCEEEEEECSSC-CCEEEEEEECCCBSCC
T ss_pred HHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHcCCceEEecc--CCceEEEEEeCCCC-CCEEEEEEecccccCC
Confidence 4578999999999999986 78899999999999999998764332 57799999987643 4899999999999987
Q ss_pred CCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCC
Q 013216 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (447)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (447)
+ |+.+||.+. . +|++||||+ |++++++|.|++.|.+.+..++++|+|+|+++||+ + .|++.+++++.++++
T Consensus 105 ~--~~~~Pf~~~-~-~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~-~-~G~~~~~~~g~~~~~ 175 (404)
T 1ysj_A 105 E--QTNLPFASK-V-DGTMHACGH---DFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEI-A-AGARKVLEAGVLNGV 175 (404)
T ss_dssp C--CCCCTTCCS-S-TTCBCTTSH---HHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTT-T-CHHHHHHHTTTTTTE
T ss_pred C--CCCCCcccC-C-CCceEcCcC---hHHHHHHHHHHHHHHhccccCCceEEEEEeccccc-c-hhHHHHHhcCCCcCC
Confidence 4 999999987 4 899999994 79999999999999988777899999999999998 4 699999988766656
Q ss_pred ceEEEEecCCcCcCCcceeEee--eeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccC
Q 013216 186 NVGIVLDEGLASTTEDYRAFYA--ERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (447)
Q Consensus 186 ~~~~~~d~g~~~p~~~~~i~~~--~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 262 (447)
|..+.++.....+.+...+..+ .+|..+++|+++|+++|++.|+.| ||+..+++++..|+.+.....+ +
T Consensus 176 d~~i~~h~ep~~~~g~v~~~~g~~~~g~~~~~i~v~G~~~Has~P~~g~nAi~~~~~~i~~l~~~~~~~~~--------~ 247 (404)
T 1ysj_A 176 SAIFGMHNKPDLPVGTIGVKEGPLMASVDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNIS--------S 247 (404)
T ss_dssp EEEEEEEEETTSCTTEEEECSEEEECCEEEEEEEEECC--------CCCCHHHHHHHHHHHHC-----------------
T ss_pred CEEEEEecCCCCCCceEEeccChhhcccceEEEEEEccCccccCcccCCCHHHHHHHHHHHHHHHHhhhcC--------C
Confidence 7666664211112121222334 678999999999999999999988 9999999999999765322111 0
Q ss_pred CCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeecccccccccccc
Q 013216 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDK 340 (447)
Q Consensus 263 ~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 340 (447)
...++++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|+++++. ..++++++ ++. .
T Consensus 248 ~~~~~~~vg~i~gG~------~~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~g~~~~---~~~------~ 312 (404)
T 1ysj_A 248 LQNAVVSITRVQAGT------SWNVIPDQAEMEGTVRTFQKEARQAVPEHMRRVAEGIAAGYGAQAE---FKW------F 312 (404)
T ss_dssp --CCEEEEEEEEECS------CSSSCCSEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEE---EEE------E
T ss_pred CCCcEEEEEEEEcCC------CCceecCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCEEE---EEE------e
Confidence 123589999999987 999999999999999999999999999999988863 23456555 431 1
Q ss_pred CCCCcccccCCCChHHHHHHHHHHHh-cCCCCCceecCCCcchHHHHHcCCCeE--EEccCCCCCCCCCCCCccccHHHH
Q 013216 341 FGRPILTATDSSNPWWNLLEEAVRKA-NGKLGKPEIFPASTDARYFRERGLPAI--GFSPMANTPILLHDHNEFLNQAEY 417 (447)
Q Consensus 341 ~~~p~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~g~~D~~~~~~~g~p~~--~~gp~~~~~~~~H~~~E~v~~~~l 417 (447)
..+|++ ..+.++++.+.++++++ .+..+.. ...|++|+++|.+. +|++ .|||+... ..|++||+++++++
T Consensus 313 ~~~~~~---~~~~~l~~~~~~~~~~~g~g~~~~~-~~~g~tD~~~~~~~-~p~~~~~~G~~~~~--~~H~~~E~v~~~~l 385 (404)
T 1ysj_A 313 PYLPSV---QNDGTFLNAASEAAARLGYQTVHAE-QSPGGEDFALYQEK-IPGFFVWMGTNGTE--EWHHPAFTLDEEAL 385 (404)
T ss_dssp EEECCE---EECGGGHHHHHHHHHHTTCEEEECC-CBSSCCTHHHHHTT-SCEEEEEEECCCSS--CTTCTTCCCCTTHH
T ss_pred cCCCCc---cCCHHHHHHHHHHHHHhcCCccccc-cCCccchHHHHHHH-CCeEEEEEcCCCCC--CCCCCCCcCCHHHH
Confidence 233333 34578999999999998 3332123 56789999999876 8864 78887532 69999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 013216 418 LKGIDIYESIIKAYAS 433 (447)
Q Consensus 418 ~~~~~~~~~~l~~l~~ 433 (447)
.+++++|+.++.++++
T Consensus 386 ~~~~~~~~~~~~~~~~ 401 (404)
T 1ysj_A 386 TVASQYFAELAVIVLE 401 (404)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
|
| >3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=409.72 Aligned_cols=369 Identities=15% Similarity=0.122 Sum_probs=272.4
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEee-------------------------------
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF------------------------------- 72 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~------------------------------- 72 (447)
+...+++++++++|+++|+++ ++|.+++++|.++|+++|++++....
T Consensus 10 ~~~~~~~~~~~~~lh~~Pe~~--~~E~~t~~~i~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 87 (445)
T 3io1_A 10 RQLAPSMTQWRRDFHLHAESG--WLEFRTASKVADILDGLGYQLALGRDVIDADSRMGLPDEETLARAFERAREQGAPER 87 (445)
T ss_dssp HTTHHHHHHHHHHHHHTCCCT--TCCHHHHHHHHHHHHHTTCEEEEGGGTSCSTTCCSCCCHHHHHHHHHHHHTTTCCTT
T ss_pred HHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHHHHHHHHCCCeEEecccccccccccccccchhhhhhhhhhcccccccc
Confidence 567889999999999999985 89999999999999999998775210
Q ss_pred ----c-CCCCeEEEEecCCCCCCCeEEEeeccccCCCCC-CCCCcCCCce---eeCCCCcEEecCcccchhHHHHHHHHH
Q 013216 73 ----A-KNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGA---HLDSQGNIFARGSQDMKCVGMQYLEAI 143 (447)
Q Consensus 73 ----~-~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~-~~W~~~Pf~~---~~~~~g~l~GrG~~D~k~~~a~~l~a~ 143 (447)
. .+++||+++++|..+ +|+|+|+||||+||+++ .+|+++||.. ... +|++||||+ +++++++|.|+
T Consensus 88 ~~~~~~~~~~~vva~~~~~~~-g~~i~l~ah~Davp~~e~~~~~~~Pf~~~~~s~~-~G~~h~cGh---d~~~a~~l~aa 162 (445)
T 3io1_A 88 WLPAFEGGFAGVVATLDTGRP-GPTLAFRVDMDALDLNEQHDDSHRPHRDHFASCN-AGMMHACGH---DGHTAIGLGLA 162 (445)
T ss_dssp TGGGGTTTCCCEEEEEECSSC-CCEEEEEEECCCCCC--------------------------CTT---CTHHHHHHHHH
T ss_pred ccccccCCCCEEEEEEeCCCC-CCEEEEEEecCCcCCCCCCCCCcCccccccccCC-CCceEecCc---hHHHHHHHHHH
Confidence 0 156899999987654 48999999999999986 7899999987 454 899999997 48999999999
Q ss_pred HHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeee---eEEEEEEEee
Q 013216 144 RRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC---PWWLVIKARG 220 (447)
Q Consensus 144 ~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G---~~~~~i~v~G 220 (447)
+.|.+.+.+++++|+|+|+++||++ .|++.|++++.++++|++++++.+...|.+ .+.++.+| ..+++|+++|
T Consensus 163 ~~L~~~~~~~~g~v~l~f~p~EE~~--~Ga~~~i~~g~~~~~d~~~~~h~~~~~~~g--~i~~~~~g~~a~~~~~i~v~G 238 (445)
T 3io1_A 163 HVLKQYAAQLNGVIKLIFQPAEEGT--RGARAMVAAGVVDDVDYFTAIHIGTGVPAG--TVVCGGDNFMATTKFDVQFSG 238 (445)
T ss_dssp HHHHHTGGGCCSEEEEEEESCTTTT--CHHHHHHHTTTTTTCSEEEEEEEEEEEETT--BEESCCCCBCEEEEEEEEEEC
T ss_pred HHHHhCcCcCCceEEEEEecccccc--chHHHHHHcCCccccceeEEEeccCCCCCC--eEEEecCCeeEEEEEEEEEEe
Confidence 9999987788999999999999954 599999998888888999988754323433 45555554 5799999999
Q ss_pred cCCcc-CCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEee
Q 013216 221 APGHG-AKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298 (447)
Q Consensus 221 ~~~Hs-~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~ 298 (447)
+++|+ +.|+.| ||+..+++++..|+.+... ..+.++++++.+++|. +.|+||++|++.+++
T Consensus 239 k~~HaGs~P~~g~nAi~~aa~~i~~l~~l~~~-----------~~~~~~~~vg~i~gG~------~~NvIP~~a~~~~~i 301 (445)
T 3io1_A 239 VAAHAGGKPEDGRNALLAAAQAALGLHAIPPH-----------SAGASRVNVGVMQAGT------GRNVVPSSALLKVET 301 (445)
T ss_dssp CCSSTTCCGGGCCCHHHHHHHHHHHHHTCCCB-----------TTBCEEEEEEEEEECS------CTTSCCCEEEEEEEE
T ss_pred ecCCCCCCCcCCcCHHHHHHHHHHHHHHHHhh-----------cCCCeEEEEEEEecCC------CCceeCCeEEEEEEE
Confidence 99998 689998 9999999999999887421 1123689999999987 999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCC---Cc
Q 013216 299 RVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLG---KP 373 (447)
Q Consensus 299 R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~ 373 (447)
|+.+.++.+.+.++|+++++. ..++++++ ++. ...+| ++.+|.++++.+.++++++++... ..
T Consensus 302 R~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~---i~~------~~~~~---~~~~d~~l~~~~~~a~~~~~g~~~v~~~~ 369 (445)
T 3io1_A 302 RGESEAINQYVFERAQHVVAGAAAMYEARYE---LRM------MGAAT---ASAPSPAWVDYLREQAARVPGVQQAVDRI 369 (445)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHTTCEEE---EEE------EEEEC---CCCCCHHHHHHHHHHHHHSTTCCBCBSSC
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHhCCeEE---EEE------ecCCC---CcCCCHHHHHHHHHHHHHhcCCccceecC
Confidence 999999999999999988863 23566666 442 12223 346688999999999999864321 11
Q ss_pred eecCCCcchHHHHHcCCC------e-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhhc
Q 013216 374 EIFPASTDARYFRERGLP------A-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYV 435 (447)
Q Consensus 374 ~~~~g~~D~~~~~~~g~p------~-~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~~ 435 (447)
..+.|++|+++|.+. +| + +.|||+... ..|+|||+++++++..++++|+.++..++..+
T Consensus 370 ~~~~g~~D~~~~~~~-~P~~gg~~~~~~~G~~~~~--~~H~~~E~i~~~~l~~g~~~~~~~~~~~~~~~ 435 (445)
T 3io1_A 370 AAPAGSEDATLMMAR-VQARGGLASYMIFGTELSA--GHHNEKFDFDESVMAVAVETLARVALNFPWQR 435 (445)
T ss_dssp CCCCBCCTHHHHHHH-HHHTTCEEEEEEEEEEC-------------CCCHHHHHHHHHHHHHHTCCSCC
T ss_pred CCCccHHHHHHHHHH-hcccCCceEEEEEeCCCCC--CCCCCCCcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 224689999999876 33 3 578886432 68999999999999999999999998886544
|
| >3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=401.13 Aligned_cols=371 Identities=19% Similarity=0.251 Sum_probs=250.3
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCC----------ChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEec-CCCCCC
Q 013216 22 SPAKSDDSIIERFRAYLQIDTSQPNP----------DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP-GSNPQL 90 (447)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~ips~s~~~----------~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~-g~~~~~ 90 (447)
..+.+.+++++++++|++|||+|+.. ++.++++++.++|+++|++++.++ |+++..+ |. +.
T Consensus 28 ~i~~~~~~~~~~l~~lv~ips~s~~e~~~~~~p~g~~~~~~~~~l~~~l~~~G~~~~~~~------~~~~~~~~g~--~~ 99 (492)
T 3khx_A 28 KVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVD------HIAGRIEAGK--GN 99 (492)
T ss_dssp HHHTTHHHHHHHHHHHHTSCCCCCSSSCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEET------TTEEEEEEEC--SS
T ss_pred HHHHhHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHcCCcceEeC------CEEEEEEeCC--CC
Confidence 34567899999999999999997422 135899999999999999987542 3454443 43 35
Q ss_pred CeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcc
Q 013216 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170 (447)
Q Consensus 91 ~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 170 (447)
|+|+|+|||||||+++ .|+++||.+.++ ||++||||++|||++++++|.|++.|++.+.+++++|.|+|+++||+|+
T Consensus 100 ~~i~l~~H~D~vp~~~-~w~~~Pf~~~~~-~g~l~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~- 176 (492)
T 3khx_A 100 DVLGILCHVDVVPAGD-GWDSNPFEPVVT-EDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDW- 176 (492)
T ss_dssp CEEEEEEECCCCCCCS-CCSSCTTSCEEC-SSEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEECCTTCCC-
T ss_pred CEEEEEEeccCCCCCC-CcccCCCceEEE-CCEEEecCCccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccCCC-
Confidence 8999999999999964 899999999997 9999999999999999999999999999988889999999999999997
Q ss_pred cCHHHHHccccccCCceEEEEec-------------------------------------CCc---CcCCccee------
Q 013216 171 DGAEKFADSHVFNSLNVGIVLDE-------------------------------------GLA---STTEDYRA------ 204 (447)
Q Consensus 171 ~G~~~~~~~~~~~~~~~~~~~d~-------------------------------------g~~---~p~~~~~i------ 204 (447)
.|++.++++... ++++++.|. |.. .|..-..+
T Consensus 177 ~g~~~~~~~~~~--~~~~~~~d~~~p~~~g~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~n~vpd~~~aiv~ept~ 254 (492)
T 3khx_A 177 KCTDRYFKTEEM--PTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKEN 254 (492)
T ss_dssp CTTSHHHHHSCC--CSEEECSSCSSCSCCCBCEEEEEEEEECCCCCCCCCCSEEEEEEEECSCTTSCCCEEEEEEEECSC
T ss_pred cCHHHHHHhCcC--CCEEEecCCCccEEEecCcEEEEEEEEeccccccccccceeEEecccccCCcCCchHheEeecccc
Confidence 699999986421 333333321 100 01100001
Q ss_pred -------------EeeeeeeE-----EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhch--hhhHHHHHh------
Q 013216 205 -------------FYAERCPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFR--ASQFDLVKA------ 257 (447)
Q Consensus 205 -------------~~~~~G~~-----~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~--~~~~~~~~~------ 257 (447)
..+.+|.. +++|+++|+++|+|.|+.| |||..+++++..|..-. ...++.+..
T Consensus 255 ~~~~~~~~~~~~~~~g~kG~~~~~~~~~~i~v~GkaaHas~P~~G~NAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~ 334 (492)
T 3khx_A 255 MTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSD 334 (492)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEECBCCCC------BCHHHHHHHHHTTSCBCHHHHHHHHHHHHHTTTCT
T ss_pred hHHHHHHHHHHHhhcCceeEEEecCCeEEEEEEeEEcccCCCccCccHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCC
Confidence 13458888 9999999999999999999 99999999998875200 001111100
Q ss_pred -cc-------ccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeec
Q 013216 258 -GL-------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELG 329 (447)
Q Consensus 258 -~~-------~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 329 (447)
+. ......++++++.+++| . |++|++.+|+|+.+..+.+++.++|+++++ ..+++++
T Consensus 335 ~~~~l~i~~~d~~~G~~t~n~g~i~~g-------~----P~~a~~~idiR~~~~~~~~~v~~~i~~~~~--~~g~~~~-- 399 (492)
T 3khx_A 335 FGEKMGMKFHTDVMGDVTTNIGVITYD-------N----ENAGLFGINLRYPEGFEFEKAMDRFANEIQ--QYGFEVK-- 399 (492)
T ss_dssp TSGGGTCC-------CCEEEEEEEEEE-------T----TTCCEEEEEEEECTTCCHHHHHHHHHHHHG--GGTEEEE--
T ss_pred CccccCCccccCCcCccEEeeeEEEEe-------c----CCEEEEEEEeeCCCCCCHHHHHHHHHHHHH--HcCCEEE--
Confidence 00 00112357777777755 1 999999999999999999999999998886 3456666
Q ss_pred cccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCC
Q 013216 330 QFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHN 409 (447)
Q Consensus 330 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~ 409 (447)
+. ....|.. .+.++++++.+.++++++.+..+.+..++|++|+++|.. ++|.-.++|+... ..|++|
T Consensus 400 -i~-------~~~~p~~--~~~d~~lv~~l~~a~~~~~G~~~~~~~~gggtDa~~~~~-~v~~G~~fPg~~~--~~H~~d 466 (492)
T 3khx_A 400 -LG-------KVQPPHY--VDKNDPFVQKLVTAYRNQTNDMTEPYTIGGGTYARNLDK-GVAFGAMFSDSED--LMHQKN 466 (492)
T ss_dssp -EE-------EEECCBC--CGGGCHHHHHHHHHHHTTCC--------------------------------------CCS
T ss_pred -Ee-------ccCCcee--cCCCcHHHHHHHHHHHHHhCCCCeEEeeehhHHHHHhhC-ceEECCcCCCCCC--CCCCCc
Confidence 43 2334433 456789999999999998544336667789999999976 3443211166443 699999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHh
Q 013216 410 EFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 410 E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
|+++++++.+++++|+.++..+++
T Consensus 467 E~v~i~~l~~~~~i~~~~l~~l~~ 490 (492)
T 3khx_A 467 EYITKKQLFNATSIYLEAIYSLCV 490 (492)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999865
|
| >1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-48 Score=388.78 Aligned_cols=360 Identities=20% Similarity=0.208 Sum_probs=286.3
Q ss_pred hHHHHHHHhhhcccCCCCCC--------ChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCCCC-CCCeEEEee
Q 013216 28 DSIIERFRAYLQIDTSQPNP--------DYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNP-QLPSILLNS 97 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~~~--------~e~~~~~~i~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~~~-~~~~ill~~ 97 (447)
++++++|++|++|||+|+.+ +|.++++||.++|+++|++ ++. + ..+||++.++|+++ ..|+|+|+|
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~~~~~~p~~~~e~~~~~~l~~~l~~~G~~~~~~-~---~~~nvia~~~g~~~~~~~~i~l~a 77 (417)
T 1fno_A 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITL-S---EKGTLMATLPANVEGDIPAIGFIS 77 (417)
T ss_dssp CSHHHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEE-C---TTCCEEEEECCSSCSCCCCEEEEE
T ss_pred hHHHHHHHHhEEecCCCCcccCCCCCCccHHHHHHHHHHHHHHcCCCeEEE-C---CCceEEEEECCCCCCCCCceEEEE
Confidence 46889999999999997533 6789999999999999998 543 2 45699999987642 358999999
Q ss_pred ccccCCCCCCCCCcCCC-----cee-e---------------------CCCCcEEecCc----ccchhHHHHHHHHHHHH
Q 013216 98 HTDVVPSEPSKWSHHPF-----GAH-L---------------------DSQGNIFARGS----QDMKCVGMQYLEAIRRL 146 (447)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf-----~~~-~---------------------~~~g~l~GrG~----~D~k~~~a~~l~a~~~l 146 (447)
||||||..+ .|..+|| .+. + . |+++||||+ +|||++++++|.|++.|
T Consensus 78 H~D~Vp~~~-~~~~~p~~~~~~~g~~i~~~~g~~~~~~~~~~~~~~~~g-d~~l~grGat~l~~D~K~g~a~~l~a~~~l 155 (417)
T 1fno_A 78 HVDTSPDFS-GKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLG-QTLITTDGKTLLGADDKAGVAEIMTALAVL 155 (417)
T ss_dssp ECCBCTTSC-CSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTT-SCEEECCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred eccccCCCC-CCCCCceEEecCCCCeecccccccccchhhcchhhhhcC-CcEEEcCCccccccccHHhHHHHHHHHHHH
Confidence 999999875 6998885 443 2 3 579999997 99999999999999999
Q ss_pred HHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccC
Q 013216 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA 226 (447)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~ 226 (447)
.+.+ .++++|+|+|+++||+| .|++.+++++ + +.|+++++|.+ |.+ .+..+.+|..+++|+++|+++|+|
T Consensus 156 ~~~~-~~~~~v~~~~~~~EE~g--~Ga~~~~~~~-~-~~d~~i~~d~~---~~g--~i~~~~~g~~~~~i~~~G~~~Hs~ 225 (417)
T 1fno_A 156 KGNP-IPHGDIKVAFTPDEEVG--KGAKHFDVEA-F-GAQWAYTVDGG---GVG--ELEFENFNAASVNIKIVGNNVHPG 225 (417)
T ss_dssp HSSS-CCCCCEEEEEESCGGGT--CTTTTCCHHH-H-CCSEEEECCCC---STT--BEECCBCEEEEEEEEEECBCCCGG
T ss_pred HhCC-CCCCcEEEEEEeccccC--CChhhhchhh-c-CCCEEEEeCCC---CcC--eeEEecCCceeEEEEEEeeccCCC
Confidence 9988 68899999999999987 4888776443 3 36788888753 333 577889999999999999999999
Q ss_pred -CCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCC
Q 013216 227 -KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTT 304 (447)
Q Consensus 227 -~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~ 304 (447)
.|+.+ ||+..+++++..|+.+.... ......++++++.+++| |++|++.+|+|+.+.+
T Consensus 226 ~~p~~g~nAi~~~a~~i~~l~~~~~~~--------~~~~~~~~~~v~~i~gG------------p~~a~~~~d~R~~~~~ 285 (417)
T 1fno_A 226 TAKGVMVNALSLAARIHAEVPADEAPE--------TTEGYEGFYHLASMKGT------------VDRAEMHYIIRDFDRK 285 (417)
T ss_dssp GCTTTCBCHHHHHHHHHHTSCTTSSGG--------GCCTTCCEEEEEEEEEC------------SSEEEEEEEEEESSHH
T ss_pred CCccccCCHHHHHHHHHHhhhccCCcc--------cccccccEEEEEEEeec------------cCeEEEEEEEeCCCHH
Confidence 58888 99999999999887653211 01112346777777754 8999999999999999
Q ss_pred CHHHHHHHHHHHhccC--CCC----ceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCC
Q 013216 305 DAESLERRIVEEWAPA--SRN----MTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPA 378 (447)
Q Consensus 305 ~~~~i~~~i~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g 378 (447)
+.+.+.++|+++++.. .++ ++++ +. ..+.|....+..++++++.+.+++++++... .+..+.|
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~g 354 (417)
T 1fno_A 286 QFEARKRKMMEIAKKVGKGLHPDCYIELV---IE-------DSYYNMREKVVEHPHILDIAQQAMRDCHITP-EMKPIRG 354 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCTTCCEEEE---EE-------EEECCCHHHHHTSTHHHHHHHHHHHHTTCCC-BCCCBSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCceEEEE---Ee-------ccccchhccccCCCHHHHHHHHHHHHcCCCc-eecccee
Confidence 9999999999888632 222 4444 32 1222221134568999999999999975543 4556679
Q ss_pred CcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhhccC
Q 013216 379 STDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQH 437 (447)
Q Consensus 379 ~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~~~~ 437 (447)
++|+++|...|+|++.|||+.. ..|++||+++++++.+++++|..++..+++..+.
T Consensus 355 gtD~~~~~~~gip~v~~G~~~~---~~H~~~E~i~~~~l~~~~~~~~~~~~~~~~~~~~ 410 (417)
T 1fno_A 355 GTDGAQLSFMGLPCPNLFTGGY---NYHGKHEFVTLEGMEKAVQVIVRIAELTAKRGQL 410 (417)
T ss_dssp CCHHHHHTTTTCCCCEECCSEE---STTSTTCEEEHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred ccchHhHHhcCCCEEEEcCCCC---CCCCcccccCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999988999999999865 4899999999999999999999999999876543
|
| >2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=393.50 Aligned_cols=355 Identities=13% Similarity=0.151 Sum_probs=279.7
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC--CCCCeEEEeecccc
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDV 101 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~--~~~~~ill~~H~Dt 101 (447)
+.+.+++++++++|++|||+| ++|.++++||.++|+++|++++.. ...|+++.++|+. ++.|+|+|+||||+
T Consensus 7 ~~~~~~~~~~~~~l~~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~----~~~nv~a~~~g~~g~~~~~~i~l~aH~D~ 80 (487)
T 2qyv_A 7 SLQPKLLWQWFDQICAIPHPS--YKEEQLAQFIINWAKTKGFFAERD----EVGNVLIRKPATVGMENRKPVVLQAHLDM 80 (487)
T ss_dssp CSSSHHHHHHHHHHHHSCCBT--TCCHHHHHHHHHHHHHTTCEEEEC----TTCCEEEEECCCTTCTTBCCEEEEEESCB
T ss_pred ccCHHHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEeCCCCCCCCCCeEEEEccCCc
Confidence 557889999999999999985 788999999999999999987642 3359999998742 34589999999999
Q ss_pred CCCCCC----CCCcCCCceeeCCCCcEEecCcc---cchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHH
Q 013216 102 VPSEPS----KWSHHPFGAHLDSQGNIFARGSQ---DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (447)
Q Consensus 102 vp~~~~----~W~~~Pf~~~~~~~g~l~GrG~~---D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (447)
||.++. +|+++||++.++ ||++||||++ |||++++++|.+++. .+ .++++|.|+|+++||+|+ .|++
T Consensus 81 vp~~~~~~~~~w~~~p~~~~~~-dg~l~g~G~~lgaD~k~g~a~~l~a~~~---~~-~~~~~v~~~~~~~EE~g~-~Ga~ 154 (487)
T 2qyv_A 81 VPQANEGTNHNFDQDPILPYID-GDWVKAKGTTLGADNGIGMASALAVLES---ND-IAHPELEVLLTMTEERGM-EGAI 154 (487)
T ss_dssp CCC----------CCCCCEEEC-SSEEEETTBCCCHHHHHHHHHHHHHHHC---SS-SCCSSEEEEEESCTTTTC-HHHH
T ss_pred cCCCCCCCccccccCCeeEEee-CCEEEeCCCCcCCcCHHHHHHHHHHHHh---CC-CCCCCEEEEEEeccccCC-HHHH
Confidence 999864 899999999997 9999999997 999999999999863 34 367899999999999885 6999
Q ss_pred HHHccccccCCceEEEEecCCcCcCCcceeEeeeeee-----------------EEEEEEEee-cCCccCCC-CCC--CH
Q 013216 175 KFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCP-----------------WWLVIKARG-APGHGAKL-YDN--SA 233 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~-----------------~~~~i~v~G-~~~Hs~~p-~~g--na 233 (447)
.+++++ ++ .|+++++|.+. ...+..+.+|. .+++|+++| +++|||.| +.+ ||
T Consensus 155 ~~~~~~-~~-~d~~~~~d~~~-----~~~i~~g~~g~~~~~~~~~~~~~~~~~g~~~~i~v~G~~~~Hsg~~~~~g~~nA 227 (487)
T 2qyv_A 155 GLRPNW-LR-SEILINTDTEE-----NGEIYIGCAGGENADLELPIEYQVNNFEHCYQVVLKGLRGGHSGVDIHTGRANA 227 (487)
T ss_dssp TCCSSC-CC-CSEEEECCCCC-----TTEEEEEECEEEEEEEEEECCEEECCCSEEEEEEEECCCCCBTTTTTTSCCCCH
T ss_pred HHHHhc-cC-CCEEEEEccCC-----CCeEEEeccCCcceeeeccccccccCCCeEEEEEEEccCCccCCcccccCCCCH
Confidence 988754 43 67788776431 12355554443 779999999 89999987 553 99
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEee---------------
Q 013216 234 MENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI--------------- 298 (447)
Q Consensus 234 i~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~--------------- 298 (447)
+..+++++..|+.+.+ .++++++.+++|. +.|+||++|++.+++
T Consensus 228 i~~~~~~i~~l~~~~~---------------~~~~~v~~i~gG~------~~NvIP~~a~~~~~~~~~~~~~~~~~~~~~ 286 (487)
T 2qyv_A 228 IKVLLRFLAELQQNQP---------------HFDFTLANIRGGS------IRNAIPRESVATLVFNGDITVLQSAVQKFA 286 (487)
T ss_dssp HHHHHHHHHHHHHHCT---------------TCCEEEEEEEEES------CTTBCCCCEEEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccC---------------CCcEEEEEEeCCC------cCcccCCceEEEEEecCCHHHHHHHHHHHH
Confidence 9999999999876421 2478899999887 999999999999999
Q ss_pred -------------------------ecCCCCCHHHHHHHHHHHhcc----------------------------------
Q 013216 299 -------------------------RVPPTTDAESLERRIVEEWAP---------------------------------- 319 (447)
Q Consensus 299 -------------------------R~~~~~~~~~i~~~i~~~~~~---------------------------------- 319 (447)
|+.|.++.+.+.+.|++++..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~i~~~i~~~~~gv~~~~~~~~~~~~~s~nl~~~~~~~~~~~~~~~~ 366 (487)
T 2qyv_A 287 DVIKAELALTEPNLIFTLEKVEKPQQVFSSQCTKNIIHCLNVLPNGVVRNSDVIENVVETSLSIGVLKTEDNFVRSTMLV 366 (487)
T ss_dssp HHHHHHTTTTCTTCEEEEEECCCCSEEECHHHHHHHHHHHHHSCCEEEEECSSSTTCEEEEEEEEEEEECSSEEEEEEEE
T ss_pred HHHHHHhccCCCCeEEEEEeccccccccCHHHHHHHHHHHHhCCCcceeeccccCCceEeccceEEEEEcCCeEEEEEEc
Confidence 777777777777777665320
Q ss_pred -------------------CCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCc
Q 013216 320 -------------------ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST 380 (447)
Q Consensus 320 -------------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~ 380 (447)
..++++++ +. ..+|++ ..+.++++++.+.++++++.+..+.+....|++
T Consensus 367 R~~~~~~~~~~~~~~~~~~~~~g~~~~---~~--------~~~p~~-~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~gg~ 434 (487)
T 2qyv_A 367 RSLIESGKSYVASLLKSLASLAQGNIN---LS--------GDYPGW-EPQSHSDILDLTKTIYAQVLGTDPEIKVIHAGL 434 (487)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCEEE---EE--------EEECCB-CCCSCCHHHHHHHHHHHHHHSSCCEEEEESSCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCceEE---EC--------CCCCCC-CCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 00122232 21 234444 355689999999999999655443556778999
Q ss_pred chHHHHHc--CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 381 DARYFRER--GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 381 D~~~~~~~--g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
|+++|.+. |+|++.|||+.. ..|+|||+++++++.+++++|+.++..+++
T Consensus 435 D~~~~~~~~pg~~~v~~Gp~~~---~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 486 (487)
T 2qyv_A 435 ECGLLKKIYPTIDMVSIGPTIR---NAHSPDEKVHIPAVETYWKVLTGILAHIPS 486 (487)
T ss_dssp THHHHHHHCTTSEEEECCCCEE---STTSTTCEEEHHHHHHHHHHHHHHHHHCCB
T ss_pred cHHHHHhhCCCCCEEEECCCCC---CCCCCCceeEHHHHHHHHHHHHHHHHHHhc
Confidence 99999886 788999999653 599999999999999999999999988753
|
| >3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=392.76 Aligned_cols=368 Identities=14% Similarity=0.144 Sum_probs=284.9
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC--CCCCeEEEeecccc
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDV 101 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~--~~~~~ill~~H~Dt 101 (447)
+.+.+++++++++|++|||+| ++|.++++||.++|+++|++++. + ...|+++.++|+. .+.|+|+|+||||+
T Consensus 10 ~~~~~~~~~~~~~L~~ips~s--~~e~~~~~~l~~~l~~~G~~v~~-~---~~~nv~a~~~g~~g~~~~~~v~l~aH~D~ 83 (490)
T 3mru_A 10 TLSPAPLWQFFDKICSIPHPS--KHEEALAQYIVTWATEQGFDVRR-D---PTGNVFIKKPATPGMENKKGVVLQAHIDM 83 (490)
T ss_dssp GSSSHHHHHHHHHHHHSCCBT--TCCTTHHHHHHHHHHHTTCEEEE-C---TTCCEEEEECCCTTCTTCCCEEEEEECCB
T ss_pred ccCHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHcCCEEEE-c---CCCeEEEEEcCCCCCCCCCeEEEEeccCC
Confidence 457889999999999999985 78899999999999999998774 2 3459999998752 24689999999999
Q ss_pred CCCCC----CCCCcCCCceeeCCCCcEEecCcc---cchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHH
Q 013216 102 VPSEP----SKWSHHPFGAHLDSQGNIFARGSQ---DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (447)
Q Consensus 102 vp~~~----~~W~~~Pf~~~~~~~g~l~GrG~~---D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (447)
||+.+ .+|+++||++.++ +|++||||++ |||+++|++|.+++ ....++++|.|+|+++||+|+ .|++
T Consensus 84 vp~~~~~~~~~w~~~p~~~~~~-~g~l~g~G~~lgaD~k~g~a~~l~~l~----~~~~~~~~v~~~~~~~EE~g~-~Ga~ 157 (490)
T 3mru_A 84 VPQKNEDTDHDFTQDPIQPYID-GEWVTAKGTTLGADNGIGMASCLAVLA----SKEIKHGPIEVLLTIDEEAGM-TGAF 157 (490)
T ss_dssp CCCBCTTSCCCTTTCCCCEEEE-TTEEEETTBCCCHHHHTTHHHHHHHHH----CSSCCCCSEEEEEESCSSSTT-GGGG
T ss_pred CCCCCCCcccccccCCceEEee-CCeEecCCCccCCCCHHHHHHHHHHHH----hCCCCCCCEEEEEEccccccc-HhHH
Confidence 99985 2799999999997 9999999996 99999999998752 333468999999999999985 7999
Q ss_pred HHHccccccCCceEEEEecCCc----------CcCCc---ceeEeeeeeeEEEEEEEee-cCCccCC-CCCC--CHHHHH
Q 013216 175 KFADSHVFNSLNVGIVLDEGLA----------STTED---YRAFYAERCPWWLVIKARG-APGHGAK-LYDN--SAMENL 237 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~d~g~~----------~p~~~---~~i~~~~~G~~~~~i~v~G-~~~Hs~~-p~~g--nai~~~ 237 (447)
.+++. .+ +.++++++|.+.. .|+.. .....+++|..+++|+++| +++|+|. |+.| ||+..+
T Consensus 158 ~~~~~-~~-~~~~~~~~d~~~~g~~~~g~~~g~~~~~~~~~~~~~~~~g~~~~~i~v~G~~~gHs~~~p~~g~~nai~~~ 235 (490)
T 3mru_A 158 GLEAG-WL-KGDILLNTDSEQEGEVYMGCAGGIDGAMTFDITRDAIPAGFITRQLTLKGLKGGHSGCDIHTGRGNANKLI 235 (490)
T ss_dssp TCCSS-SC-CSSEEEECCCCCTTCCEEEECEEEEEEEEEECCEECCCTTEEEEEEEEECCCCEETTTSSSSCCCCHHHHH
T ss_pred Hhhhc-cc-CCCEEEEcCCCCCCeEEEecCCccceEEEeeeeeeccCCCceEEEEEEECCCCcccccccccCCcCHHHHH
Confidence 98764 33 3578888885311 01000 0012456899999999999 9999996 7876 999999
Q ss_pred HHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHh
Q 013216 238 FKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317 (447)
Q Consensus 238 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~ 317 (447)
++++..|+.. ++++++.+++|. +.|+||++|++.+++|..+.+..+++.+++.+.+
T Consensus 236 ~~~l~~l~~~------------------~~~~v~~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~~~~~~~~~~ 291 (490)
T 3mru_A 236 GRFLAGHAQE------------------LDLRLVEFRGGS------LRNAIPREAFVTVALPAENQDKLAELFNYYTELL 291 (490)
T ss_dssp HHHHHHHTTT------------------TTCEEEEEEECS------CTTEECCCEEEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc------------------CcEEEEEEECCC------CCcccCCccEEEEEECcccHHHHHHHHHHHHHHH
Confidence 9999988641 368899999987 9999999999999999887666666666665544
Q ss_pred cc----CCCCceEeecc---------------------------------------------------------cccc--
Q 013216 318 AP----ASRNMTFELGQ---------------------------------------------------------FKQR-- 334 (447)
Q Consensus 318 ~~----~~~~~~~~~~~---------------------------------------------------------~~~~-- 334 (447)
+. ....++++... +..+
T Consensus 292 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~~~~~~~g~v~~S~n~gv~~~~~~~~~~~~~~R~~ 371 (490)
T 3mru_A 292 KTELGKIETDIVTFNEEVATDAQVFAIADQQRFIAALNACPNGVMRMSDEVEGVVETSLNVGVITTEENKVTVLCLIRSL 371 (490)
T ss_dssp HHHHTTTCCCCEEEEEECCCCCCEECHHHHHHHHHHHHHSCCEEEEECTTTTSCEEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred HHHhhccCCCeEEEEEecCCccccCCHHHHHHHHHHHHHCCCccceeccccCCCeeEEEEEEEEEEeCCEEEEEEEcCCC
Confidence 31 11111111000 0000
Q ss_pred --------------------ccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHc--CCCe
Q 013216 335 --------------------ASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER--GLPA 392 (447)
Q Consensus 335 --------------------~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~--g~p~ 392 (447)
.++.....+|++ ..+.++++++.+.++++++.+..+.+..++|++|+++|.+. ++|+
T Consensus 372 ~~~~~~~i~~~l~~~~~~~g~~~~~~~~~p~~-~~~~d~~lv~~l~~a~~~~~G~~~~~~~~ggg~d~~~~~~~~p~~~~ 450 (490)
T 3mru_A 372 IDSGRSQVEGMLQSVAELAGAQIEFSGAYPGW-KPDADSEIMAIFRDMYEGIYGHKPNIMVIHAGLECGLFKEPYPNMDM 450 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCEEEEEEEECCB-CCCTTCHHHHHHHHHHHTTSSSCCCCEEESSCCHHHHTTSSCTTCEE
T ss_pred CchHHHHHHHHHHHHHHHcCCeEEecCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCeEEEEEecHHHHHHHHhCCCCCE
Confidence 001112344555 45778999999999999985554477788899999999987 6779
Q ss_pred EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 393 IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 393 ~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
+.|||+.. ..|+|||+++++++.+++++|.+++..+.+
T Consensus 451 v~fGp~~~---~~H~p~E~v~i~~l~~~~~~l~~~l~~l~~ 488 (490)
T 3mru_A 451 VSFGPTIK---FPHSPDEKVKIDTVQLFWDQMVALLEAIPE 488 (490)
T ss_dssp EECCCCEE---STTSTTCEEEHHHHHHHHHHHHHHHHHCCC
T ss_pred EEECCCCC---CCCCCCccccHHHHHHHHHHHHHHHHHhhh
Confidence 99999865 599999999999999999999999988753
|
| >1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=384.68 Aligned_cols=370 Identities=18% Similarity=0.272 Sum_probs=275.2
Q ss_pred CCChhHHHHHHHhhhcccCCCCCC----------ChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeE
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNP----------DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~----------~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i 93 (447)
+.+.+++++++++|++|||+|... ++.++++||.++|+++|++++.. +..++++.+ |. +.|+|
T Consensus 10 ~~~~~~~~~~l~~l~~ips~s~~~~~~~~~p~~~~~~~~~~~l~~~l~~~G~~~~~~----~~~~~~~~~-g~--~~~~i 82 (470)
T 1lfw_A 10 EAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENF----ANYAGRVNF-GA--GDKRL 82 (470)
T ss_dssp HTTHHHHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEE----TTTEEEEEE-CC--CSSEE
T ss_pred HHhHHHHHHHHHHHcCCCCcCCCccccccCCCcHHHHHHHHHHHHHHHHcCCeEEEe----cCeEEEEEe-CC--CCCeE
Confidence 457889999999999999997321 23689999999999999988743 345778877 54 35899
Q ss_pred EEeeccccCCCCCCCCCcCCCceee-CCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccC
Q 013216 94 LLNSHTDVVPSEPSKWSHHPFGAHL-DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (447)
Q Consensus 94 ll~~H~Dtvp~~~~~W~~~Pf~~~~-~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (447)
+|+|||||||+++ +|+++||++.+ + ||++||||++|||++++++|.|++.|++.+.+++++|+|+|+++||+|+ .|
T Consensus 83 ~l~~H~D~vp~~~-~w~~~Pf~~~~~~-~g~l~grG~~D~K~~~a~~l~a~~~l~~~~~~~~~~i~~i~~~~EE~g~-~G 159 (470)
T 1lfw_A 83 GIIGHMDVVPAGE-GWTRDPFKMEIDE-EGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEETNW-VG 159 (470)
T ss_dssp EEEEECCBCCCCS-CCSSCTTSCEECT-TCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCTTTTC-HH
T ss_pred EEEEeecccCCCC-CccCCCcceeEee-CCEEECCCcccChHHHHHHHHHHHHHHHcCCCCCCCEEEEEecCcccCC-cc
Confidence 9999999999975 89999999999 8 9999999999999999999999999999888889999999999999986 69
Q ss_pred HHHHHccccccC----CceE--EEEec-CCc------C-c--CCc-----------cee-------Ee------------
Q 013216 173 AEKFADSHVFNS----LNVG--IVLDE-GLA------S-T--TED-----------YRA-------FY------------ 206 (447)
Q Consensus 173 ~~~~~~~~~~~~----~~~~--~~~d~-g~~------~-p--~~~-----------~~i-------~~------------ 206 (447)
++.+++++.... .|.. +++.. |.. . + .+. ..+ ..
T Consensus 160 ~~~~~~~~~~~~~~~~~D~~~~~~~ge~g~~~~~l~~~~~~~~g~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~ 239 (470)
T 1lfw_A 160 IDYYLKHEPTPDIVFSPDAEYPIINGEQGIFTLEFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVKLAY 239 (470)
T ss_dssp HHHHHHHSCCCSEEEESSEESSEEEEECEEEEEEEEECCCCCCCSBEEEEEEECSBTTBCCSEEEEEEECSCHHHHHHHH
T ss_pred HHHHHHhCcCCcEEEEeCCCceEEEeccceEEEEEEEccCCcCCCcceeeeecCCcCCcccccceEEecccchHHHHHHH
Confidence 999987643211 1110 11100 000 0 0 000 001 11
Q ss_pred -------eeeeeE-----EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhch--hhhHHHHHhcc--ccCC------
Q 013216 207 -------AERCPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFR--ASQFDLVKAGL--KAEG------ 263 (447)
Q Consensus 207 -------~~~G~~-----~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~--~~~~~~~~~~~--~~~~------ 263 (447)
+.+|.. +++|+++|+++|++.|+.+ ||+..+++++..|+.-. ....+.+.... ...+
T Consensus 240 ~~~~~~~~~~G~~~~~~~~~~i~v~G~~~Ha~~P~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 319 (470)
T 1lfw_A 240 ESFLADKELDGSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLGIF 319 (470)
T ss_dssp HHHHHHHTCEEEEEEETTEEEEEEECBCCBTTCGGGSBCHHHHHHHHHTTSCBCHHHHHHHHHHHHTTTTCTTSTTTTCC
T ss_pred HHHhhhhccccceeecCCcEEEEEeecccCCCCCccCccHHHHHHHHHHhCCCcchhHHHHHHHHHhcCCCCcccccCCc
Confidence 246765 8999999999999999988 99999999988774110 00011111000 0000
Q ss_pred ------CcceeeeeeeecCCCCCCCccccccCCc-eEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeecccccccc
Q 013216 264 ------EVVSVNMAFLKAGTPSPNGFVMNLQPSE-AEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRAS 336 (447)
Q Consensus 264 ------~~~t~~~~~i~~g~~~~~~~~~n~iP~~-~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 336 (447)
..++++++ ..|.+|++ |++.+|+|+++.++.+.+.++|+++++. +++++ +.
T Consensus 320 ~~~~~~~~~t~~~g------------~i~~~p~~~a~~~~diR~~~~~~~~~i~~~i~~~~~~---g~~v~---~~---- 377 (470)
T 1lfw_A 320 HHDDLMGDLASSPS------------MFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSG---ILDVT---YN---- 377 (470)
T ss_dssp CEETTTEECEEEEE------------EEEEETTSCEEEEEEEEECTTCCHHHHHHHHHHHHTT---TEEEE---CS----
T ss_pred ccccccccceEEEE------------EEEEcCCceEEEEEEEecCCCCCHHHHHHHHHHHhcC---CeEEE---EE----
Confidence 11344444 34567999 9999999999999999999999998864 55555 33
Q ss_pred ccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCC-CCCCCCCCccccHH
Q 013216 337 LHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANT-PILLHDHNEFLNQA 415 (447)
Q Consensus 337 ~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~-~~~~H~~~E~v~~~ 415 (447)
..+|++ .++.++++++.+.++++++.+..+.+..++|++|++++. |++.|||...+ ....|+|||+++++
T Consensus 378 ----~~~~~~-~~~~d~~l~~~~~~a~~~~~g~~~~~~~~~g~~d~~~~~----~~v~~G~~~pg~~~~~H~~~E~i~~~ 448 (470)
T 1lfw_A 378 ----GFEEPH-YVPGSDPMVQTLLKVYEKQTGKPGHEVVIGGGTYGRLFE----RGVAFGAQPENGPMVMHAANEFMMLD 448 (470)
T ss_dssp ----CCBCCE-ECCTTCHHHHHHHHHHHHHHCCCCCEEEESSCCGGGGST----TCEECCEECTTCCCCTTSTTCEEEHH
T ss_pred ----eCCCce-eeCCCCHHHHHHHHHHHHHcCCCCceeeecCHhHHHhCC----CeEEECCCCCCCCCCCCCCCcceEHH
Confidence 233443 456789999999999999654433556777999999885 68899975311 23689999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 013216 416 EYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 416 ~l~~~~~~~~~~l~~l~~~ 434 (447)
++.+++++|+.++..++..
T Consensus 449 ~l~~~~~~~~~~~~~l~~~ 467 (470)
T 1lfw_A 449 DLILSIAIYAEAIYELTKD 467 (470)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998753
|
| >3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=367.80 Aligned_cols=351 Identities=16% Similarity=0.157 Sum_probs=274.2
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCC
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp 103 (447)
+...+++++++++|+++||+| ++|.++++||.++|+++|++++... ..+++|++++++|..+ +|+|+|+|||||||
T Consensus 12 ~~~~~~~~~~~~~l~~~pe~s--~~E~~~~~~i~~~l~~~G~~v~~~~-~g~~~~via~~~g~~~-g~~i~l~ah~D~vp 87 (394)
T 3ram_A 12 ETNKYSYIEISHRIHERPELG--NEEIFASRTLIDRLKEHDFEIETEI-AGHATGFIATYDSGLD-GPAIGFLAEYDALP 87 (394)
T ss_dssp HHTHHHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHHHTTCEEEEEE-TTEEEEEEEEEECSSS-SCEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHHHHhCCCCC--cchHHHHHHHHHHHHHcCCeEEeCC-CCCceEEEEEEeCCCC-CCEEEEEEecccCC
Confidence 457789999999999999985 7899999999999999999987543 2236799999987654 48999999999999
Q ss_pred CCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHH-HHHccccc
Q 013216 104 SEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE-KFADSHVF 182 (447)
Q Consensus 104 ~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~-~~~~~~~~ 182 (447)
. ++||||+ |++ .+++|.|++.|.+.+..++++|.|+|+++||+++..|++ .+++.+.+
T Consensus 88 g------------------~~ha~G~-d~~--~a~~l~aa~~L~~~~~~~~g~v~~~f~~~EE~~~~~Ga~~~~~~~g~~ 146 (394)
T 3ram_A 88 G------------------LGHACGH-NII--GTASVLGAIGLKQVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGVI 146 (394)
T ss_dssp T------------------TSSTTCH-HHH--HHHHHHHHHHHHTTHHHHCSEEEEEECCCTTCCTTCCHHHHHHHHTGG
T ss_pred C------------------cceECCc-cHH--HHHHHHHHHHHHHhHhhCCceEEEEEECCccCCCCCchHHHHHHcCCc
Confidence 2 3467774 554 467888999998876678999999999999987336999 99998877
Q ss_pred cCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccc
Q 013216 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (447)
Q Consensus 183 ~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 260 (447)
+++|+++.++. +....+..+.+|..+++|+++|+++|+| .|+.| ||+..+++++..|+.+....
T Consensus 147 ~~~d~~~~~h~-----~~~~~~~~~~~g~~~~~i~v~Gk~~Ha~~~P~~g~nAi~~a~~~i~~l~~l~~~~--------- 212 (394)
T 3ram_A 147 DQIDIALMIHP-----GNETYKTIDTLAVDVLDVKFYGKSAHASENADEALNALDAMISYFNGVAQLRQHI--------- 212 (394)
T ss_dssp GGCSEEECCEE-----ESSBBCCCCBCEEEEEEEEEECBCCBHHHHGGGCBCHHHHHHHHHHHHHHHGGGS---------
T ss_pred ccCCEEEEECC-----ccccCCCccccceeEEEEEEEccccccCCCCcCCCCHHHHHHHHHHHHHHHHhhC---------
Confidence 77888887753 2223455678999999999999999999 89999 99999999999998764311
Q ss_pred cCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeecccccccccc
Q 013216 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLH 338 (447)
Q Consensus 261 ~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~ 338 (447)
...++++++.+++|. +.|+||++|++.+++|+.+.++.+.+.++|+++++. ..++++++ ++..
T Consensus 213 --~~~~~~~~~~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~e---i~~~---- 277 (394)
T 3ram_A 213 --KKDQRVHGVILDGGK------AANIIPDYTHARFYTRAMTRKELDILTEKVNQIARGAAIQTGCDYE---FGPI---- 277 (394)
T ss_dssp --CTTCEEEEEEEEBCS------CTTBCCSEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEE---EEES----
T ss_pred --CCCCeeEEEEEECCC------CCceeCCeEEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHhCCeEE---EEEe----
Confidence 112456677778876 999999999999999999999999999999988863 23456666 4410
Q ss_pred ccCCCCcccccCCCChHHHHHHHHHHHhcCCCC-CceecCCCcchHHHHHcCCCeEE-EccCCCCCCCCCCCCcc-----
Q 013216 339 DKFGRPILTATDSSNPWWNLLEEAVRKANGKLG-KPEIFPASTDARYFRERGLPAIG-FSPMANTPILLHDHNEF----- 411 (447)
Q Consensus 339 ~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~g~~D~~~~~~~g~p~~~-~gp~~~~~~~~H~~~E~----- 411 (447)
...+ +++.+|.++++.++++++++| ... .+..+.|++|+++|.. .+|++. |-+...+....|+| |+
T Consensus 278 -~~~~---~~~~~d~~l~~~~~~a~~~~G-~~~~~~~~~~g~~D~~~~~~-~~P~~~~~~g~~~~~~~~H~~-ef~~~~~ 350 (394)
T 3ram_A 278 -QNGV---NEFIKTPKLDDLFAKYAEEVG-EAVIDDDFGYGSTDTGNVSH-VVPTIHPHIKIGSRNLVGHTH-RFREAAA 350 (394)
T ss_dssp -SCCB---CCCCCCHHHHHHHHHHHHHTT-CCBCCSCCCCBCCTHHHHTT-TSCBCCCEEECSCTTCCTTSH-HHHHHTT
T ss_pred -cCCC---CCccCCHHHHHHHHHHHHHhC-cccccCCCCcccccHHHHHH-HhchheEEeeecCCCCCCCCH-HHHhccC
Confidence 1222 245678999999999999976 431 2345678999999986 488763 22222112358999 66
Q ss_pred --ccHHHHHHHHHHHHHHHHHHHhhc
Q 013216 412 --LNQAEYLKGIDIYESIIKAYASYV 435 (447)
Q Consensus 412 --v~~~~l~~~~~~~~~~l~~l~~~~ 435 (447)
++.+++..++++|+.++.+++.-+
T Consensus 351 ~~~~~~~l~~g~~~la~~~~~~l~~~ 376 (394)
T 3ram_A 351 SVHGDEALIKGAKIMALMGLELITNQ 376 (394)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcCH
Confidence 599999999999999999987533
|
| >3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=352.32 Aligned_cols=348 Identities=15% Similarity=0.132 Sum_probs=275.6
Q ss_pred ChhHHHHHHHhhhcccCCC--------CCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEee
Q 013216 26 SDDSIIERFRAYLQIDTSQ--------PNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s--------~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~ 97 (447)
+.++++++|++|++|||.+ .+++|.++++||.++|+++|++++. + ...|+++.++|++++.|+|+|.+
T Consensus 3 ~~~~~~~~l~~l~~i~s~~~~g~~r~~~s~~e~~~~~~l~~~l~~~g~~~~~-d---~~gnv~a~~~g~~~~~~~i~l~a 78 (408)
T 3n5f_A 3 QGERLWQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYE-D---AAGNLIGRKEGTNPDATVVLVGS 78 (408)
T ss_dssp CHHHHHHHHHHHHTTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHHTCEEEE-C---TTCCEEEEECCSSTTSCEEEEEE
T ss_pred CHHHHHHHHHHHHccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCCCEEEE-c---CCCCEEEEecCCCCCCCEEEEEe
Confidence 5688999999999999954 2578999999999999999998875 2 23399999988765469999999
Q ss_pred ccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccC----cccCH
Q 013216 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGA 173 (447)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~ 173 (447)
|||+||.+ |..|+|++++++|.+++.|.+.+.+++++|.|+|+++||.+ ++.|+
T Consensus 79 H~D~v~~~----------------------g~~d~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~~~~~~g~~Gs 136 (408)
T 3n5f_A 79 HLDSVYNG----------------------GCFDGPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGMIGS 136 (408)
T ss_dssp ESCCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCSSCTTTTCCCHHH
T ss_pred cCCCCCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCccccccCCCCcCH
Confidence 99999963 45799999999999999999998889999999999999973 34689
Q ss_pred HHHHcc------------cc---------------c-----c--CCceEEEEec--CCc-Cc-CCcceeEeeeeeeEEEE
Q 013216 174 EKFADS------------HV---------------F-----N--SLNVGIVLDE--GLA-ST-TEDYRAFYAERCPWWLV 215 (447)
Q Consensus 174 ~~~~~~------------~~---------------~-----~--~~~~~~~~d~--g~~-~p-~~~~~i~~~~~G~~~~~ 215 (447)
+.++.. +. + + +++..+.++. |.. ++ .....++.+.+|..+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~lhi~~g~~le~~~~~~gi~~~~~g~~~~~ 216 (408)
T 3n5f_A 137 RAMAGTLPPEALECRDAEGISLAEAMKQAGLDPDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAGLIWVK 216 (408)
T ss_dssp HHHHTCCCGGGGSCBCTTCCBHHHHHHHTTCCGGGGGGGCCCTTTEEEEEEEEECSSSHHHHHTCSEEEEEEECEEEEEE
T ss_pred HHHHcCCCHHHhhccCCCCCCHHHHHHHhCCChhhhhhcccCccCccEEEEEeeccchhHHHcCCCeEEEEEeccceEEE
Confidence 888721 11 1 1 2343444432 210 11 11356788999999999
Q ss_pred EEEeecCCcc-CCCC-CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecC-CCCCCCccccccCCc
Q 013216 216 IKARGAPGHG-AKLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSE 291 (447)
Q Consensus 216 i~v~G~~~Hs-~~p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g-~~~~~~~~~n~iP~~ 291 (447)
|+++|+++|+ +.|+ .+ ||+..+++++..|+.+... . . .++++++.+++| . +.|+||++
T Consensus 217 i~v~G~~~Hags~P~~~g~nAi~~aa~~i~~l~~~~~~----~-------~-~~~~~vg~i~gG~~------~~NvIP~~ 278 (408)
T 3n5f_A 217 FTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR----T-------G-TTVGTVGQLHVYPG------GINVIPER 278 (408)
T ss_dssp EEEECCCEETTTSCTTTCCCHHHHHHHHHHHHHHHHHH----H-------S-SCEEEEEEEEEESC------CTTEECSE
T ss_pred EEEEEEcCcCCCCccccccCHHHHHHHHHHHHHHHHHh----c-------C-CcEEEEEEEEecCC------CCcCcCCe
Confidence 9999999999 5794 77 9999999999999876421 1 1 368999999987 5 89999999
Q ss_pred eEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCC
Q 013216 292 AEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGK 369 (447)
Q Consensus 292 ~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~ 369 (447)
|++.+|+|+.+.++.+++.++|+++++. ..++++++ ++. ...+|+ +..+.++++.+++++++++..
T Consensus 279 a~~~~diR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~---i~~------~~~~p~---~~~d~~l~~~~~~a~~~~g~~ 346 (408)
T 3n5f_A 279 VEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRVT---TER------LQEMPP---VLCSDEVKRAAEAACQKLGYP 346 (408)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEE---EEE------EEEECC---EECCHHHHHHHHHHHHHHTCC
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEE---EEE------ecCCCC---cCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999988763 23455666 442 223333 345789999999999998644
Q ss_pred CCCceecCCCcchHHHHHcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 370 LGKPEIFPASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 370 ~~~~~~~~g~~D~~~~~~~g~p~-~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
. .+....|++|+++|.+. +|+ +.|+|+... ..|+|||+++++++.+++++|+.++.++++
T Consensus 347 ~-~~~~~~ggtD~~~~~~~-iP~~~~~~~~~~~--~~H~~~E~i~~~~l~~~~~~~~~~~~~l~~ 407 (408)
T 3n5f_A 347 S-FWLPSGAAHDSVQLAPI-CPIGMIFVRSQDG--VSHSPAEWSTKEDCAAGAEVLYHTVWQLAQ 407 (408)
T ss_dssp C-CEEEESSCCTTTTTTTT-SCEEEEEECCGGG--CCSSTTCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred c-ccCCCcCchHHHHHHHH-CCEEEEEeCCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 3 45566799999999887 997 578887653 589999999999999999999999998853
|
| >2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=358.30 Aligned_cols=351 Identities=15% Similarity=0.181 Sum_probs=276.1
Q ss_pred CCChhHHHHHHHhh-hcccCCC-----C----------CCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC
Q 013216 24 AKSDDSIIERFRAY-LQIDTSQ-----P----------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN 87 (447)
Q Consensus 24 ~~~~~~~~~~l~~l-~~ips~s-----~----------~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~ 87 (447)
+.+.++++++|++| ++|||+| + +++|.++++||.++|+++|++++. + ...|++++++|.+
T Consensus 28 ~~~~~~~~~~l~~L~v~i~s~s~~~~~~~~~g~~r~~~s~~e~~~~~~l~~~l~~~G~~v~~-d---~~gnvia~~~g~~ 103 (474)
T 2v8h_A 28 SIASGRLNQTILETGSQFGGVARWGQESHEFGMRRLAGTALDGAMRDWFTNECESLGCKVKV-D---KIGNMFAVYPGKN 103 (474)
T ss_dssp CCCTTHHHHHHHHHHHHTTEECCCSSSTTCCEECCCTTSHHHHHHHHHHHHHHHHTTCEEEE-B---TTCCEEEEECCSS
T ss_pred cCCHHHHHHHHHHHhhhcCCccccccccccCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEE-e---cCceEEEEECCCC
Confidence 56789999999999 9999985 2 457889999999999999998763 2 3348999998765
Q ss_pred CCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCccc
Q 013216 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (447)
Q Consensus 88 ~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (447)
++ ++|+|+|||||||.+ |+ .|+|++++++|.|++.|.+.+.+++++|.|+|+++||+
T Consensus 104 ~~-~~i~l~~H~DtVp~~----------------g~------~D~k~gvaa~L~a~~~L~~~~~~~~~~v~lif~~dEE~ 160 (474)
T 2v8h_A 104 GG-KPTATGSHLDTQPEA----------------GK------YDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNAEG 160 (474)
T ss_dssp CC-SCEEEEECCCCCSSB----------------CS------STTHHHHHHHHHHHHHHHHHTCCCSSCEEEEECTTCSC
T ss_pred CC-CeEEEEEecccCCCC----------------CC------cCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccC
Confidence 43 689999999999974 22 39999999999999999999888899999999999998
Q ss_pred C----cccCHHHHHccc---------c-----------------c----------cCCceEEEEec--CCc-C-cCCcce
Q 013216 168 G----GHDGAEKFADSH---------V-----------------F----------NSLNVGIVLDE--GLA-S-TTEDYR 203 (447)
Q Consensus 168 g----~~~G~~~~~~~~---------~-----------------~----------~~~~~~~~~d~--g~~-~-p~~~~~ 203 (447)
+ ++.|++.+.+.. . + .+++..+.++. |.. . ......
T Consensus 161 ~~~~~g~~Gs~~l~~~~~~~~~~~~~d~~~~dg~~~~e~l~~~G~~~~~~~~~~~e~~~~~~~lHi~~g~~l~~~g~~~~ 240 (474)
T 2v8h_A 161 ARFARSCTGSSVWSHDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIG 240 (474)
T ss_dssp SSSSCTTHHHHHHTTSSCHHHHHTCBCSSCSSCCBHHHHHHHHTCCCSBCSCTTTSCCSEEEEEEECCSSHHHHTTCSEE
T ss_pred CCCCCCcccHHHHHhccCHhhhhhhcccccccCccHHHHHHhcCCcccccccccccchhhheeeeeccCccccccCCcce
Confidence 3 345888886410 0 0 12233333321 100 0 001356
Q ss_pred eEeeeeeeEEEEEEEeecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecC-CCC
Q 013216 204 AFYAERCPWWLVIKARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPS 279 (447)
Q Consensus 204 i~~~~~G~~~~~i~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g-~~~ 279 (447)
++.+.+|..+++|+++|+++|+|. |+ .+ ||+..+++++..|+.+.... .++++++.|++| .
T Consensus 241 i~~~~~G~~~~~i~v~G~~~Hsg~~P~~~g~nAi~~~a~~i~~l~~~~~~~-------------~~t~~vg~i~gG~~-- 305 (474)
T 2v8h_A 241 IVTGVQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRH-------------NGLFTCGIIDAKPY-- 305 (474)
T ss_dssp EEEEECEEEEEEEEEECCCEETTTCCGGGCCCHHHHHHHHHHHHHHHHHHT-------------TCEEECCCEEEESC--
T ss_pred eEEeecceEEEEEEEEeecCCCCCCCcccCCCHHHHHHHHHHHHHHHHhhc-------------CCEEEEEEEEecCC--
Confidence 788999999999999999999995 87 67 99999999999987653210 358999999987 5
Q ss_pred CCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CC---CCceEeeccccccccccccCCCCcccccCCCCh
Q 013216 280 PNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--AS---RNMTFELGQFKQRASLHDKFGRPILTATDSSNP 354 (447)
Q Consensus 280 ~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 354 (447)
+.|+||++|++.+|+|+.+.++.+++.++|+++++. .. ++++++ ++. ...+|++ ..+++
T Consensus 306 ----~~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~~~~g~~~~---~~~------~~~~~~~---~~d~~ 369 (474)
T 2v8h_A 306 ----SVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIKINDGGALSYE---SET------LQVSPAV---NFHEV 369 (474)
T ss_dssp ----CTTEECSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHTTCCTTCCCEEE---EEE------EEEECCE---ECCHH
T ss_pred ----CCceeCCEEEEEEEecCCChHHHHHHHHHHHHHHHHHHhhcccCCcEEE---EEE------ecCCCCc---cCCHH
Confidence 899999999999999999999999999999988863 22 456666 432 2233433 44789
Q ss_pred HHHHHHHHHHHhc-CCCCCceecCCCcchHHHHHcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013216 355 WWNLLEEAVRKAN-GKLGKPEIFPASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 355 ~~~~~~~a~~~~~-~~~~~~~~~~g~~D~~~~~~~g~p~-~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~ 432 (447)
+++.+.+++++++ ...+.+....|++|+++|.+. +|+ +.|||+... ..|+|||+++++++.+++++|+.++..++
T Consensus 370 l~~~~~~a~~~~G~~~~~~~~~~~ggtD~~~~~~~-~P~~~~fgp~~~~--~~H~p~E~i~~~~l~~~~~~~~~~l~~l~ 446 (474)
T 2v8h_A 370 CIECVSRSAFAQFKKDQVRQIWSGAGHDSCQTAPH-VPTSMIFIPSKDG--LSHNYYEYSSPEEIENGFKVLLQAIINYD 446 (474)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEEESSCCTHHHHTTT-SCEEEEEECCGGG--CCSSTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcceecCCcCCccHHHHHhh-CCEEEEEeCCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999995 303255677899999999987 887 789998553 69999999999999999999999999987
Q ss_pred hhc
Q 013216 433 SYV 435 (447)
Q Consensus 433 ~~~ 435 (447)
+..
T Consensus 447 ~~~ 449 (474)
T 2v8h_A 447 NYR 449 (474)
T ss_dssp HHH
T ss_pred HhH
Confidence 643
|
| >1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=355.46 Aligned_cols=351 Identities=15% Similarity=0.161 Sum_probs=274.4
Q ss_pred ChhHHHHHHHhhhcccCCCCC--------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEee
Q 013216 26 SDDSIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~--------~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~ 97 (447)
+.++++++|++|++|||+|+. ++|.++++||.++|+++|++++. + ...|++++++|.+++.|+|+|+|
T Consensus 7 ~~~~~~~~l~~lv~i~s~s~~g~~~~~~s~~e~~~~~~i~~~l~~~G~~v~~-~---~~gnv~a~~~g~~~~~~~i~l~~ 82 (423)
T 1z2l_A 7 FRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRF-D---EVGNLYGRLNGTEYPQEVVLSGS 82 (423)
T ss_dssp HHHHHHHHHHHHHHTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHTTCEEEE-C---TTSCEEEEECCSSEEEEEEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCCCCCcccCcCCHHHHHHHHHHHHHHHHcCCEEEE-e---cCCcEEEEEcCCCCCCCEEEEEE
Confidence 568899999999999998732 46889999999999999998764 2 23499999987654348999999
Q ss_pred ccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccC----cccCH
Q 013216 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGA 173 (447)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~ 173 (447)
||||||.+ |..|+|++++++|.|++.|.+.+.+++++|.|+|+++||++ ++.|+
T Consensus 83 H~D~Vp~~----------------------g~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~i~~~~EE~~~~~~g~~Gs 140 (423)
T 1z2l_A 83 HIDTVVNG----------------------GNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGS 140 (423)
T ss_dssp ECCCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCCSSSCSCHHH
T ss_pred ecCCCCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCccccccCCCcccH
Confidence 99999963 33689999999999999999988788999999999999985 23488
Q ss_pred HHHHc----cccc-----------------------------cCCceEEEEec--CC-cCcCC-cceeEeeeeeeEEEEE
Q 013216 174 EKFAD----SHVF-----------------------------NSLNVGIVLDE--GL-ASTTE-DYRAFYAERCPWWLVI 216 (447)
Q Consensus 174 ~~~~~----~~~~-----------------------------~~~~~~~~~d~--g~-~~p~~-~~~i~~~~~G~~~~~i 216 (447)
+.+.. ++.+ .+++..+.++. |. .+|++ ...++.+.+|..+++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~p~~~~~~~~~~~~h~~~~~~~e~~~~~~~~~~~~~g~~~~~i 220 (423)
T 1z2l_A 141 KNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTV 220 (423)
T ss_dssp HHHTTCCCGGGTSSCCCSSSCCHHHHHHHTTCCCCSSCCCCCCCEEEEEEEEECCSSHHHHTTCCEEEEEEECEEEEEEE
T ss_pred HHHHcCCCHHHHhhhcCcCCcCHHHHHHHcCCccccccccCCCCceEEEEEEeccCchHHHCCCCeEEEeeEecceEEEE
Confidence 88875 2211 01233333321 10 01221 3567788999999999
Q ss_pred EEeecCCccC-CCC-CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecC-CCCCCCccccccCCce
Q 013216 217 KARGAPGHGA-KLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEA 292 (447)
Q Consensus 217 ~v~G~~~Hs~-~p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g-~~~~~~~~~n~iP~~~ 292 (447)
+++|+++|+| .|+ .+ ||+..+++++..|+.+... . .+.++++++.+++| . +.|+||++|
T Consensus 221 ~v~G~~~Ha~~~P~~~g~nAi~~~a~~i~~l~~~~~~----~-------~~~~~~~vg~i~gg~~------~~NvIP~~a 283 (423)
T 1z2l_A 221 TLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKR----M-------GDPLVLTFGKVEPRPN------TVNVVPGKT 283 (423)
T ss_dssp EEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHH----H-------CTTCEEECCCEEEESC------CTTEECCEE
T ss_pred EEEeEcCCCCCCccccCcCHHHHHHHHHHHHHHHHHh----c-------CCCceEEEEEEeecCC------cceeECCEE
Confidence 9999999999 685 67 9999999999999765431 0 11358899999986 4 899999999
Q ss_pred EEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCC
Q 013216 293 EAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKL 370 (447)
Q Consensus 293 ~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ 370 (447)
++.+|+|+.+.++.+++.++|+++++. ..++++++ ++. ...+|++ ..++++++.+.+++++++...
T Consensus 284 ~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~g~~~~---~~~------~~~~~~~---~~~~~l~~~~~~~~~~~g~~~ 351 (423)
T 1z2l_A 284 TFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGID---IDL------WMDEEPV---PMNKELVATLTELCEREKLNY 351 (423)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEE---EEE------EEEECCE---ECCHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEE---EEE------ecCCCCc---cCCHHHHHHHHHHHHHcCCCe
Confidence 999999999999999999999888763 22455555 431 1233332 346899999999999985443
Q ss_pred CCceecCCCcchHHHHHcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhhc
Q 013216 371 GKPEIFPASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYV 435 (447)
Q Consensus 371 ~~~~~~~g~~D~~~~~~~g~p~-~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~~ 435 (447)
.+..+.|++|+++|... +|+ +.|||+... ..|++||+++++++.+++++|+.++..++...
T Consensus 352 -~~~~~~ggtD~~~~~~~-~p~~~~~~p~~~~--~~H~~~E~i~~~~l~~~~~~~~~~~~~l~~~~ 413 (423)
T 1z2l_A 352 -RVMHSGAGHDAQIFAPR-VPTCMIFIPSING--ISHNPAERTNITDLAEGVKTLALMLYQLAWQK 413 (423)
T ss_dssp -EEEEESSCCTHHHHTTT-SCEEEEEECCGGG--CCSSTTCCCCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -EEecCCCcccHHHHHhh-CCEEEEEeCCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567799999999887 887 688998653 58999999999999999999999999997654
|
| >3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=292.46 Aligned_cols=261 Identities=20% Similarity=0.302 Sum_probs=208.2
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCC
Q 013216 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (447)
Q Consensus 25 ~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~ 104 (447)
.+.+++++++++|++|||+| ++|.++++||.++|+++|++++..+.. +++|+++.+ |. +.|+|+|+|||||||.
T Consensus 3 ~~~~~~~~~l~~lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~-~~~nv~a~~-g~--~~~~i~l~~H~D~vp~ 76 (268)
T 3t68_A 3 ATDSPVLALAKELISRQSVT--PADAGCQDLMIERLKALGFEIESMVFE-DTTNFWARR-GT--QSPLFVFAGHTDVVPA 76 (268)
T ss_dssp -CCCHHHHHHHHHHTSCCBT--TCCTTHHHHHHHHHHHTTCEECCCEET-TEEC-CEEE-CS--SSCEEEEEEECCBCCC
T ss_pred ccHHHHHHHHHHHhCCCCCC--CCchHHHHHHHHHHHHCCCeEEEEecC-CccEEEEEe-CC--CCCeEEEEccccccCC
Confidence 34688999999999999996 677789999999999999988765533 667999998 54 3589999999999999
Q ss_pred CC-CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccc--c
Q 013216 105 EP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--V 181 (447)
Q Consensus 105 ~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~ 181 (447)
++ +.|+++||++.++ +|++||||++|||++++++|.|++.|.+.+.+++++|+|+|+++||.|+..|++.+++.. .
T Consensus 77 ~~~~~w~~~pf~~~~~-~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~~Ga~~~~~~~~~~ 155 (268)
T 3t68_A 77 GPLSQWHTPPFEPTVI-DGFLHGRGAADMKGSLACMIVAVERFIAEHPDHQGSIGFLITSDEEGPFINGTVRVVETLMAR 155 (268)
T ss_dssp CCGGGCSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCTTSSSCCHHHHHHHHHHHT
T ss_pred CCcccCCCCCCccEEE-CCEEEecCcccchHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCccCcccCHHHHHHHHHhc
Confidence 87 7999999999997 999999999999999999999999999887778899999999999998645999988753 2
Q ss_pred ccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHHHHhcccc
Q 013216 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKA 261 (447)
Q Consensus 182 ~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~ 261 (447)
..+.|++++++.+.....+ ..+..+.+|.
T Consensus 156 ~~~~d~~i~~ept~~~~~~-~~i~~g~~G~-------------------------------------------------- 184 (268)
T 3t68_A 156 NELIDMCIVGEPSSTLAVG-DVVKNGRRGG-------------------------------------------------- 184 (268)
T ss_dssp TCCCCEEEECSCCBSSSTT-SEEEECCGGG--------------------------------------------------
T ss_pred CCCCCEEEEeCCCCCccCC-ceeEEecCCC--------------------------------------------------
Confidence 2346778887532211000 1122233332
Q ss_pred CCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccC
Q 013216 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKF 341 (447)
Q Consensus 262 ~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (447)
. +.
T Consensus 185 -----------------------------------------------------------------p---~~--------- 187 (268)
T 3t68_A 185 -----------------------------------------------------------------G---FL--------- 187 (268)
T ss_dssp -----------------------------------------------------------------G---TS---------
T ss_pred -----------------------------------------------------------------c---cc---------
Confidence 1 11
Q ss_pred CCCcccccCCCChHHHHHHHHHHHh-cCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHH
Q 013216 342 GRPILTATDSSNPWWNLLEEAVRKA-NGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKG 420 (447)
Q Consensus 342 ~~p~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~ 420 (447)
. +++++++.+.+++++. +..+ ......|++|++++++.|+|++.|||+.. ..|+|+|+++++++.++
T Consensus 188 -------~-~~~~l~~~l~~a~~~~~gi~~-~~~~sgggtD~~~~~~~g~p~~~~~~~~~---~~Hs~~E~v~~~d~~~~ 255 (268)
T 3t68_A 188 -------T-DTGELLAAVVAAVEEVNHQAP-ALLTTGGTSDGRFIAQMGAQVVELGPVNA---TIHKVNECVRIADLEKL 255 (268)
T ss_dssp -------C-CCCHHHHHHHHHHHHHHSSCC-EEESSCCCHHHHHHHHHTCEEEECCSBCT---TTTSTTCEEEHHHHHHH
T ss_pred -------C-CchHHHHHHHHHHHHHhCCCc-EEecCccccHHHHHHhcCCCEEEEeeCCC---CCCCccccccHHHHHHH
Confidence 0 1347889999999884 6554 44455689999999999999999999876 47999999999999999
Q ss_pred HHHHHHHHHHHH
Q 013216 421 IDIYESIIKAYA 432 (447)
Q Consensus 421 ~~~~~~~l~~l~ 432 (447)
+++|..++..++
T Consensus 256 ~~vl~~~l~~l~ 267 (268)
T 3t68_A 256 TDMYQKTLNHLL 267 (268)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
|
| >4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=285.02 Aligned_cols=260 Identities=19% Similarity=0.300 Sum_probs=203.0
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~ 106 (447)
.+++++++++|++|||+| ++|.++++||.++|+++|++++..+. ++++|+++.+ |. +.|+|+|+|||||||.++
T Consensus 5 ~~~~~~~l~~lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~~~-~~~~nv~a~~-g~--~~~~i~l~~H~D~vp~~~ 78 (269)
T 4h2k_A 5 KEKVVSLAQDLIRRPSIS--PNDEGCQQIIAERLEKLGFQIEWMPF-NDTLNLWAKH-GT--SEPVIAFAGHTDVVPTGD 78 (269)
T ss_dssp HHHHHHHHHHHHTSCCBT--TCCTTHHHHHHHHHHTTTCEEEECCB-TTBCEEEEEE-CS--SSCEEEEEEECCBCCCCC
T ss_pred HHHHHHHHHHHhCCCCCC--CCcHHHHHHHHHHHHHcCCeEEEEEc-CCceEEEEEe-CC--CCCEEEEEeeecccCCCC
Confidence 368899999999999996 67788999999999999999886553 3678999998 54 358999999999999987
Q ss_pred -CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcccc--cc
Q 013216 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV--FN 183 (447)
Q Consensus 107 -~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~--~~ 183 (447)
+.|+++||.+.++ +|++||||++|||++++++|.|++.|.+.+.+++++|+|+|+++||.|+..|++.+++... ..
T Consensus 79 ~~~w~~~pf~~~~~-~g~~~grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~Ga~~~~~~~~~~~~ 157 (269)
T 4h2k_A 79 ENQWSSPPFSAEII-DGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDE 157 (269)
T ss_dssp GGGCSSCTTSCCEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHHHHHHHTTC
T ss_pred cccccCCCCCeEEE-CCEEEeCCcccChHHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCcccCHHHHHHHHHhcCC
Confidence 7999999999997 9999999999999999999999999998877788999999999999986459999887422 23
Q ss_pred CCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHHHHhccccCC
Q 013216 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263 (447)
Q Consensus 184 ~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 263 (447)
+.|++++.+.......+ ..+..+.+|.
T Consensus 158 ~~d~~i~~Ept~~~~~~-~~i~~g~~G~---------------------------------------------------- 184 (269)
T 4h2k_A 158 KITYCMVGEPSSAKNLG-DVVKNGRRGG---------------------------------------------------- 184 (269)
T ss_dssp CCCEEEECCCCBSSSTT-SEEECSCTTC----------------------------------------------------
T ss_pred CCCEEEEECCCCCCcCC-ceeEEecccc----------------------------------------------------
Confidence 45777776432110000 0111111111
Q ss_pred CcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCC
Q 013216 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGR 343 (447)
Q Consensus 264 ~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (447)
+ - +.
T Consensus 185 -----------------------------------------------------------G---~---~~----------- 188 (269)
T 4h2k_A 185 -----------------------------------------------------------G---F---LT----------- 188 (269)
T ss_dssp -----------------------------------------------------------C--------------------
T ss_pred -----------------------------------------------------------c---c---cC-----------
Confidence 0 1 10
Q ss_pred CcccccCCCChHHHHHHHHHHH-hcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHH
Q 013216 344 PILTATDSSNPWWNLLEEAVRK-ANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGID 422 (447)
Q Consensus 344 p~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~ 422 (447)
.++++++.+.+++++ .+... .....+|+||+++++..|+|++.|||+.. ..|+++|+++++++.++++
T Consensus 189 -------~~~~l~~~l~~aa~~~~gi~~-~~~~~gggtDa~~~~~~g~p~~~~~~~~~---~~Hs~~E~v~~~d~~~~~~ 257 (269)
T 4h2k_A 189 -------KPGKLLDSITSAIEETIGITP-KAETGGGTSDGRFIALMGAEVVEFGPLNS---TIHKVNECVSVEDLGKCGE 257 (269)
T ss_dssp ----------HHHHHHHHHHHHHHSCCC-EEECC--CHHHHHHHTTTCEEEECCSBCT---TTTSTTCEEEHHHHHHHHH
T ss_pred -------CCcHHHHHHHHHHHHHhCCCC-EEecCCCCchHHHHHhhCCCEEEEEeCCC---CCcCCcccccHHHHHHHHH
Confidence 024688888888887 56554 44455689999999999999999999875 4799999999999999999
Q ss_pred HHHHHHHHHHh
Q 013216 423 IYESIIKAYAS 433 (447)
Q Consensus 423 ~~~~~l~~l~~ 433 (447)
+|..++..+++
T Consensus 258 ll~~~l~~l~~ 268 (269)
T 4h2k_A 258 IYHKMLVNLLD 268 (269)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999988753
|
| >1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=267.10 Aligned_cols=192 Identities=49% Similarity=0.907 Sum_probs=165.4
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCC
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp 103 (447)
..+.++++++|++|++|||+|++++|.+++++|.++|+++|++++..+...+++|++++++|.+++.|+|+|+|||||||
T Consensus 6 ~~~~~~~~~~l~~lv~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~g~~~~i~~~~g~~~~~~~ill~aH~DtVp 85 (198)
T 1q7l_A 6 PEEEHPSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSILLNSHTDVVP 85 (198)
T ss_dssp -CCCCHHHHHHHHHHTSCCBTTSCCHHHHHHHHHHHHHHHTCEEEEEEEETTEEEEEEEECCSSTTSCEEEEEEECCBCC
T ss_pred chhHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHCCCeEEEEEcCCCCeEEEEEEccCCCCCCeEEEEeeecccC
Confidence 34678899999999999999855578999999999999999998876544467899999988655458999999999999
Q ss_pred CCCCCCCcCCCceee-CCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccc
Q 013216 104 SEPSKWSHHPFGAHL-DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF 182 (447)
Q Consensus 104 ~~~~~W~~~Pf~~~~-~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 182 (447)
++++.|+++||.+.+ + +|++||||++|||++++++|.|++.|.+.+.+++++|+|+|+++||.|+..|++.++++..+
T Consensus 86 ~~~~~w~~~pf~~~~~~-~g~l~GrGa~D~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~~Ga~~~~~~~~~ 164 (198)
T 1q7l_A 86 VFKEHWSHDPFEAFKDS-EGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDEEVGGHQGMELFVQRPEF 164 (198)
T ss_dssp CCGGGCSSCTTTCCBCT-TSEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCGGGTSTTTHHHHTTSHHH
T ss_pred CCcccCccCCCeeeEcc-CCEEEeCcchhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcccccCccccHHHHHHhHHh
Confidence 987789999999997 6 89999999999999999999999999999888899999999999999855799999987554
Q ss_pred cCCceEEEEecCCcCcCCcceeEeeeeeeEEEEE
Q 013216 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVI 216 (447)
Q Consensus 183 ~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i 216 (447)
...+..+++|.|..+|+....++.++||..+++|
T Consensus 165 ~~~~~~~~id~g~~ept~~~~v~~~~kG~~~~~v 198 (198)
T 1q7l_A 165 HALRAGFALDEGIANPTDAFTVFYSERSPWWVRV 198 (198)
T ss_dssp HTTCEEEEEECCCCCSSSSEEEEECCSSCGGGCC
T ss_pred ccCCcCEEEecCccCCCCCceEEEEccEEEEEEC
Confidence 3345567788887789876689999999887653
|
| >2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=233.10 Aligned_cols=255 Identities=15% Similarity=0.168 Sum_probs=172.7
Q ss_pred HHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC-------
Q 013216 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE------- 105 (447)
Q Consensus 33 ~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~------- 105 (447)
+|++|+++||+| ++|.+++++|.++|+++|++++. + ...|+++.++|.+ +.|+|+|.||||+||.-
T Consensus 3 ~l~~L~~~~s~s--g~e~~~~~~l~~~l~~~g~~~~~-d---~~gnlia~~~g~~-~~~~v~l~aH~D~v~~~v~~i~~~ 75 (340)
T 2fvg_A 3 YLKELSMMPGVS--GDEGKVRDFIKSKIEGLVDNLYT-D---VLGNLIALKRGRD-SSKKLLVSAHMDEVGFVVSKIEKD 75 (340)
T ss_dssp CHHHHHHSCCBT--TCCHHHHHHHHHHHGGGSSEEEE-C---TTSCEEEEECCSE-EEEEEEEEEECCBCEEEEEEECTT
T ss_pred HHHHHHcCCCCC--CchHHHHHHHHHHHHhhCCEEEE-e---CCCcEEEEecCCC-CCceEEEEeccCcCcEEEEEECCC
Confidence 588999999985 78889999999999999998764 2 3449999987643 24789999999999930
Q ss_pred -------CCCCCcCCCcee-----------------------------------------------eCCC----------
Q 013216 106 -------PSKWSHHPFGAH-----------------------------------------------LDSQ---------- 121 (447)
Q Consensus 106 -------~~~W~~~Pf~~~-----------------------------------------------~~~~---------- 121 (447)
..+|..+||.+. ++.+
T Consensus 76 G~l~~~~~Gg~~~~~~~~~~v~v~~~~g~i~~~~~h~~~~~~~~~~~~~~l~id~g~~s~~e~~~~i~~gd~v~~~~~~~ 155 (340)
T 2fvg_A 76 GKVSFLPVGGVDPRILPGKVVQVKNLKGVIGYRPIHLQRDEENTPPRFENLRIDFGFSSADEAKKYVSIGDYVSFVSDYI 155 (340)
T ss_dssp SCEEEEEESCCCGGGCTTCEEEETTEEEEEEECC-----------CCSTTEEEECSCSSHHHHHTTCCTTCEEEECCCCE
T ss_pred CEEEEEeeCCcccccccCCEEEECcEEEEEcCCCccccchhhccCCCcccEEEEeCCCCHHHHHhhCCCCCEEEEccCce
Confidence 137999998773 2115
Q ss_pred ---CcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEecCCcCc
Q 013216 122 ---GNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAST 198 (447)
Q Consensus 122 ---g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p 198 (447)
+++||| ++|||++++++|.|++.|. +++++|+|+|+++||.|+ .|++.+++. + ..++++++|.+..
T Consensus 156 ~~~~~i~gr-a~D~k~g~a~~l~a~~~l~----~~~~~i~~~~~~~EE~G~-~G~~~~~~~--~-~~~~~i~~d~~~~-- 224 (340)
T 2fvg_A 156 EKNGRAVGK-AFDDRAGCSVLIDVLESGV----SPAYDTYFVFTVQEETGL-RGSAVVVEQ--L-KPTCAIVVETTTA-- 224 (340)
T ss_dssp EETTEEEES-CHHHHHHHHHHHHHHHTCC----CCSEEEEEEEECCCC------CHHHHHH--H-CCSEEEEEEEEEE--
T ss_pred eecCEEeec-cCccHHHHHHHHHHHHHhh----ccCCcEEEEEEcccccch-hhhHHHhhc--c-CCCEEEEEecccC--
Confidence 999999 9999999999999999876 367999999999999986 799988763 2 2477888763210
Q ss_pred CCcceeEeeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCC
Q 013216 199 TEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGT 277 (447)
Q Consensus 199 ~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~ 277 (447)
. ++.|+++|++.|+.| |++.. .. ..+.
T Consensus 225 ----~-------------~~~G~~~h~~~~~~G~g~~i~---------------------------------~~--~~~~ 252 (340)
T 2fvg_A 225 ----G-------------DNPELEERKWATHLGDGPAIT---------------------------------FY--HRGY 252 (340)
T ss_dssp ----C-------------SCSTTCCSSSSCCTTSCCEEC---------------------------------SC--CSSS
T ss_pred ----C-------------CCCCCccccCCcccCCCcEEE---------------------------------Ee--CCCC
Confidence 1 467888898777766 53200 00 0000
Q ss_pred CCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCCChHHH
Q 013216 278 PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWN 357 (447)
Q Consensus 278 ~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 357 (447)
.. ...+.+.+++++
T Consensus 253 ------~~--------------------~~~l~~~l~~~a---------------------------------------- 266 (340)
T 2fvg_A 253 ------VI--------------------PKEIFQTIVDTA---------------------------------------- 266 (340)
T ss_dssp ------CC--------------------CHHHHHHHHHHH----------------------------------------
T ss_pred ------CC--------------------CHHHHHHHHHHH----------------------------------------
Confidence 00 011333333332
Q ss_pred HHHHHHHHhcCCCCCc-eecCCCcchHHHHH--cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 358 LLEEAVRKANGKLGKP-EIFPASTDARYFRE--RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 358 ~~~~a~~~~~~~~~~~-~~~~g~~D~~~~~~--~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
++.+... .. ....++||+++|.. .|+|++.|||+.. ..|+++|+++++++.+++++|..++..++.
T Consensus 267 ------~~~gi~~-~~~~~~~ggtDa~~~~~~~~GiP~v~~g~~~~---~~Hs~~E~v~~~dl~~~~~ll~~~~~~l~~ 335 (340)
T 2fvg_A 267 ------KNNDIPF-QMKRRTAGGTDAGRYARTAYGVPAGVISTPAR---YIHSPNSIIDLNDYENTKKLIKVLVEEGKI 335 (340)
T ss_dssp ------HHTTCCC-EECCCC-------------CCSCEEEEEEEEE---ESSTTCEEEEHHHHHHHHHHHHHHHHHCHH
T ss_pred ------HHcCCCe-EEEecCCCCccHHHHHhhCCCCcEEEeccccc---ccCChhhcccHHHHHHHHHHHHHHHHhccc
Confidence 2222221 11 13458899998876 7999999999865 399999999999999999999999998764
|
| >2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=212.16 Aligned_cols=247 Identities=17% Similarity=0.187 Sum_probs=184.2
Q ss_pred HHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCC-----
Q 013216 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP----- 103 (447)
Q Consensus 29 ~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp----- 103 (447)
+++++|++|+++||+| ++|.+++++|.++|+++|+ ++. + +..|+++.++| + .|+|+|.||||+|+
T Consensus 3 ~~~~~l~~l~~~~s~s--g~e~~~~~~l~~~l~~~g~-~~~-d---~~gnlia~~~~-~--~~~i~l~aH~D~v~~~v~~ 72 (332)
T 2wyr_A 3 SMIEKLKKFTQIPGIS--GYEERIREEIIREIKDFAD-YKV-D---AIGNLIVELGE-G--EERILFMAHMDEIGLLITG 72 (332)
T ss_dssp CHHHHHHHHHTSCCBT--TCCHHHHHHHHHHHTTTCC-CEE-C---TTCCEEEEEES-S--SEEEEEEEECCBCEEEEEE
T ss_pred cHHHHHHHHHcCCCCC--CcHHHHHHHHHHHHhhcCc-EEE-c---CCCeEEEEecC-C--CceEEEEeccCcccEEEEE
Confidence 3678999999999985 7888999999999999999 553 2 56699999876 2 48899999999995
Q ss_pred -----------CCCCCCCc-------------------------------------------------------------
Q 013216 104 -----------SEPSKWSH------------------------------------------------------------- 111 (447)
Q Consensus 104 -----------~~~~~W~~------------------------------------------------------------- 111 (447)
.++ |..
T Consensus 73 i~~~G~l~~~~~Gg--~~~~~~~~~~v~v~~~~g~~~g~i~~~~~h~~~~~~~~~~~~~~~~id~g~~~~~~~~~~i~~G 150 (332)
T 2wyr_A 73 ITDEGKLRFRKVGG--IDDRLLYGRHVNVVTEKGILDGVIGATPPHLSLERDKSVIPWYDLVIDIGAESKEEALELVKPL 150 (332)
T ss_dssp ECTTSCEEEEEESC--CCGGGTTTEEEEEECSSCEEEEEECCCCTTC-----CCCCCGGGCCBBCSCSSHHHHHHHCCTT
T ss_pred ECCCCeEEEEecCC--cChhhccCCEEEEEcCCCCEEEEEcCCCcccChhhhccCCChHHEEEEeCCCCHHHHHhhCCCC
Confidence 442 321
Q ss_pred ------CCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCC
Q 013216 112 ------HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (447)
Q Consensus 112 ------~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (447)
+||.. .. ++++||| ++|||++++++|.|++.|.+.+ ++++|.|+|+++||.|+ .|++.++.. + ..
T Consensus 151 d~~~~~~~~~~-~~-~~~i~gr-a~D~k~g~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~G~-~G~~~~~~~--~-~~ 221 (332)
T 2wyr_A 151 DFAVFKKHFSV-LN-GKYVSTR-GLDDRFGVVALIEAIKDLVDHE--LEGKVIFAFTVQEEVGL-KGAKFLANH--Y-YP 221 (332)
T ss_dssp CEEEECCCCEE-ET-TTEEECT-THHHHHHHHHHHHHHHTTTTSC--CSSEEEEEEESCGGGTS-HHHHHHTTT--C-CC
T ss_pred CEEEEccccEE-ec-CCeEEcc-cCCcHHHHHHHHHHHHHHhhcC--CCceEEEEEECccccCc-chHHHHhcc--c-CC
Confidence 23443 35 8999999 9999999999999999988765 56899999999999986 699988642 2 35
Q ss_pred ceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHHHHhccccCCCc
Q 013216 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV 265 (447)
Q Consensus 186 ~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 265 (447)
++++++|.+.. . ..+| + ... .+
T Consensus 222 ~~~i~~d~~~~------~---~~p~--------------------~--------------~~~-------------lg-- 243 (332)
T 2wyr_A 222 QYAFAIDSFAC------C---SPLT--------------------G--------------DVK-------------LG-- 243 (332)
T ss_dssp SEEEEECCEEC------C---SGGG--------------------T--------------TCC-------------TT--
T ss_pred CEEEEEecccc------c---CCCC--------------------C--------------cee-------------eC--
Confidence 77888864211 0 0000 0 000 00
Q ss_pred ceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCc
Q 013216 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPI 345 (447)
Q Consensus 266 ~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 345 (447)
.|. . +. +. ..
T Consensus 244 ---------~G~------~-----------------------------------------i~---~~-------d~---- 253 (332)
T 2wyr_A 244 ---------KGP------V-----------------------------------------IR---AV-------DN---- 253 (332)
T ss_dssp ---------SCC------E-----------------------------------------EE---EE-------CS----
T ss_pred ---------CCC------E-----------------------------------------EE---Ec-------CC----
Confidence 010 0 11 10 00
Q ss_pred ccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013216 346 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 425 (447)
Q Consensus 346 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~ 425 (447)
....+.++++.+.+++++.+... .....+++||+++|.. |+|++.|||+.. ..|+++|+++++++.++++++.
T Consensus 254 --~~~~~~~l~~~l~~~~~~~gi~~-~~~~~~ggtDa~~~~~-GiPtv~lg~~~~---~~Hs~~E~v~~~dl~~~~~ll~ 326 (332)
T 2wyr_A 254 --SAIYSRDLARKVWSIAEKNGIEI-QIGVTGGGTDASAFQD-RSKTLALSVPIK---YLHSEVETLHLNDLEKLVKLIE 326 (332)
T ss_dssp --SCBCCHHHHHHHHHHHHHTTCCC-EEEECSSCCGGGGGTT-TSEEEEEECEEB---SCSSTTCEEEHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHcCCCe-EEecCCCCchHHHHHc-CCCEEEEcCCcC---CCCChhhcccHHHHHHHHHHHH
Confidence 12335789999999999987654 4555668999999988 999999999855 5999999999999999999999
Q ss_pred HHHHHH
Q 013216 426 SIIKAY 431 (447)
Q Consensus 426 ~~l~~l 431 (447)
.++..+
T Consensus 327 ~~~~~l 332 (332)
T 2wyr_A 327 ALAFEL 332 (332)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 988653
|
| >1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-24 Score=209.65 Aligned_cols=262 Identities=18% Similarity=0.228 Sum_probs=189.3
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCC--
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS-- 104 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~-- 104 (447)
.++++++|++|+++||+| ++|.+++++|.++|+++|++++. + ...|+++.++|.. +.|+|+|.||||+|+.
T Consensus 6 ~~~~~~~l~~L~~~~s~s--g~e~~~~~~l~~~l~~~g~~~~~-d---~~gnlia~~~g~~-~~~~vll~aH~D~v~~~v 78 (373)
T 1vhe_A 6 LDETLTMLKDLTDAKGIP--GNEREVRQVMKSYIEPFADEVTT-D---RLGSLIAKKTGAE-NGPKIMIAGHLDEVGFMV 78 (373)
T ss_dssp CCHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHGGGCSEEEE-C---TTCCEEEEEESST-TSCEEEEEEECCCCEEEE
T ss_pred HHHHHHHHHHHHcCCCCC--CchHHHHHHHHHHHHhhCCEEEE-c---CCCcEEEEecCCC-CCceEEEEecCCcCCEEE
Confidence 457999999999999985 78889999999999999998763 2 3459999988753 3489999999999992
Q ss_pred --------------C----------------CC-------CCCcCC----------------------------------
Q 013216 105 --------------E----------------PS-------KWSHHP---------------------------------- 113 (447)
Q Consensus 105 --------------~----------------~~-------~W~~~P---------------------------------- 113 (447)
+ .+ .|. +|
T Consensus 79 ~~i~~~G~l~~~~~Gg~~~~~~~~~~v~v~~~~g~~~g~i~~~-~~h~~~~~~~~~~~~~~~l~id~g~~s~~~~~~~gi 157 (373)
T 1vhe_A 79 TQITDKGFIRFQTVGGWWAQVMLAQRVTIVTKKGEITGVIGSK-PPHILSPEARKKSVEIKDMFIDIGASSREEALEWGV 157 (373)
T ss_dssp EEECTTSCEEEEEESCCCGGGTTTCEEEEEETTEEEEEEEECC-CGGGSCTTTTTSCCCGGGCEEECSCSSHHHHHHTTC
T ss_pred EEECCCCeEEEEEeCCcchhhccCCEEEEEeCCCcEEEEEcCC-CcccCchhhccCCCChhHeEEEecCCCHHHHHHcCC
Confidence 1 01 143 22
Q ss_pred -----------CceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccc
Q 013216 114 -----------FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF 182 (447)
Q Consensus 114 -----------f~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 182 (447)
|....+ ++++||| ++|||++++++|.|++.|.+.+ ++++|+|+|+++||.|+ .|++.+... +
T Consensus 158 ~~Gd~v~~~~~~~~~~~-~~~i~gr-~~D~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~G~-~G~~~~~~~--~ 230 (373)
T 1vhe_A 158 LPGDMIVPHFEFTVMNN-EKFLLAK-AWDNRIGCAIAIDVLRNLQNTD--HPNIVYGVGTVQEEVGL-RGAKTAAHT--I 230 (373)
T ss_dssp CTTCEEEECCCCEECSS-TTEEEET-THHHHHHHHHHHHHHHHHHTSC--CSSEEEEEEESCCTTTS-HHHHHHHHH--H
T ss_pred CCCCEEEEccccEEecC-CCeEEec-cCccHHHHHHHHHHHHHHhhcC--CCceEEEEEECCcccCh-hhHHHHhcc--c
Confidence 111222 6899999 6999999999999999998764 56899999999999986 699887542 2
Q ss_pred cCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHHHHhccccC
Q 013216 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (447)
Q Consensus 183 ~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 262 (447)
..|+++++|.+.. .. .+|. .|+.+
T Consensus 231 -~~d~~i~~d~~~~---~~------~~g~---------------~~~~~------------------------------- 254 (373)
T 1vhe_A 231 -QPDIAFGVDVGIA---GD------TPGI---------------SEKEA------------------------------- 254 (373)
T ss_dssp -CCSEEEEEEEEEC---CC------STTC---------------CTTTC-------------------------------
T ss_pred -CCCEEEEEecccc---CC------CCCC---------------ccccc-------------------------------
Confidence 2477888874321 00 0111 01100
Q ss_pred CCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCC
Q 013216 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFG 342 (447)
Q Consensus 263 ~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (447)
. ++-|. . | .+. +. .
T Consensus 255 ----~-----~~lg~------G----~-----------------------------------~i~---~~-------~-- 268 (373)
T 1vhe_A 255 ----Q-----SKMGK------G----P-----------------------------------QII---VY-------D-- 268 (373)
T ss_dssp ----C-----CCTTS------C----C-----------------------------------EEE---EE-------E--
T ss_pred ----c-----cccCC------C----c-----------------------------------eEE---Ee-------C--
Confidence 0 00010 0 0 011 11 0
Q ss_pred CCcccccCCCChHHHHHHHHHHHhcCCCCCc-eecCCCcchHHH--HHcCCCeEEEccCCCCCCCCCCCCccccHHHHHH
Q 013216 343 RPILTATDSSNPWWNLLEEAVRKANGKLGKP-EIFPASTDARYF--RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLK 419 (447)
Q Consensus 343 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~g~~D~~~~--~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~ 419 (447)
+ ....+.++++.+++++++.+... .. ....|+||++++ ...|+|++.|||+.. ..|+++|+++++++..
T Consensus 269 -~---~~~~~~~l~~~l~~~a~~~gi~~-~~~~~~~ggtDa~~~~~~~~GiPtv~lg~~~~---~~Hs~~E~v~~~dl~~ 340 (373)
T 1vhe_A 269 -A---SMVSHKGLRDAVVATAEEAGIPY-QFDAIAGGGTDSGAIHLTANGVPALSITIATR---YIHTHAAMLHRDDYEN 340 (373)
T ss_dssp -T---TEECCHHHHHHHHHHHHHHTCCC-EEEEETTCCCTHHHHTTSTTCCCEEEEEEEEB---STTSSCEEEEHHHHHH
T ss_pred -C---CCCCCHHHHHHHHHHHHHcCCCe-EEecCCCCCccHHHHHHhCCCCcEEEEccccc---cCCChhheecHHHHHH
Confidence 0 12345789999999999987655 44 445689999999 567999999998865 4899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 013216 420 GIDIYESIIKAYAS 433 (447)
Q Consensus 420 ~~~~~~~~l~~l~~ 433 (447)
++++|..++..++.
T Consensus 341 ~~~ll~~~l~~l~~ 354 (373)
T 1vhe_A 341 AVKLITEVIKKLDR 354 (373)
T ss_dssp HHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhcH
Confidence 99999999988754
|
| >2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-27 Score=227.60 Aligned_cols=335 Identities=12% Similarity=0.111 Sum_probs=191.2
Q ss_pred HHHHHhhhcccCCCCCCChh-HHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCCCCC
Q 013216 31 IERFRAYLQIDTSQPNPDYT-NASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKW 109 (447)
Q Consensus 31 ~~~l~~l~~ips~s~~~~e~-~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W 109 (447)
+++|++|++|||+| ++|+ +++++|.++|+++|++++. + ...||+++++|. .|+|+|.|||||||....
T Consensus 12 ~elL~~Lv~ipS~s--g~E~~~v~~~l~~~l~~~G~~v~~-D---~~GNlia~~~g~---~p~lll~~H~Dtvp~~v~-- 80 (354)
T 2wzn_A 12 WKLMQEIIEAPGVS--GYEHLGIRDIVVDVLKEVADEVKV-D---KLGNVIAHFKGS---SPRIMVAAHMDKIGVMVN-- 80 (354)
T ss_dssp HHHHHHHHHSCCBT--TCGGGTHHHHHHHHHHTTSSEEEE-C---TTCCEEEEECCS---SSEEEEEEECCBCEEEEE--
T ss_pred HHHHHHHhcCCCCC--cchHHHHHHHHHHHHHHcCCEEEE-e---CCCeEEEEECCC---CceEEEEeccccCCCcCC--
Confidence 58999999999985 6664 6899999999999998874 3 334999999753 489999999999997632
Q ss_pred CcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEE
Q 013216 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189 (447)
Q Consensus 110 ~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~ 189 (447)
... ++|++++++..++++..+++. ++..+.+.+ .+...+.++++.+||.+. .|.+.+....... +.+.
T Consensus 81 ------~~~-~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~ee~~~-~~~~~~~~~~~~~--~~g~ 148 (354)
T 2wzn_A 81 ------HID-KDGYLHIVPIGGVLPETLVAQ-RIRFFTEKG-ERYGVVGVLPPHLRRGQE-DKGSKIDWDQIVV--DVGA 148 (354)
T ss_dssp ------EEC-TTSCEEEEEESSCCGGGGTTC-EEEEEETTE-EEEEEECCCCGGGC----------CCGGGCCE--ECSC
T ss_pred ------eee-cCCceeeccCCCccHHHHHHH-HHHHhhccC-CccceEEEeeeeeEeccc-ccccchhhhhhhh--hhcc
Confidence 223 388899888877766554332 222222333 345778888899999775 4665544332221 1111
Q ss_pred EEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceee
Q 013216 190 VLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVN 269 (447)
Q Consensus 190 ~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~ 269 (447)
... .+.....+..+.++.....+++.+..+|++.+. ++...+..++..+..+.... .......
T Consensus 149 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~-----------~~~~~~~ 211 (354)
T 2wzn_A 149 SSK----EEAEEMGFRVGTVGEFAPNFTRLNEHRFATPYL--DDRICLYAMIEAARQLGDHE-----------ADIYIVG 211 (354)
T ss_dssp SSH----HHHHHTTCCTTCEEEECCCCEECSSSEEECTTH--HHHHHHHHHHHHHHHCCCCS-----------SEEEEEE
T ss_pred cch----hhhhccccccceeeeeeeeeEeecccccccccc--cccchhhhHHHHHHHHHhcc-----------ccccccc
Confidence 111 111123455566777777788888888876544 55555555555554433211 0000000
Q ss_pred eeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCccccc
Q 013216 270 MAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTAT 349 (447)
Q Consensus 270 ~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 349 (447)
......|. ..++...|.++..+....+.+........ .............. .. .
T Consensus 212 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-------------~~------~ 265 (354)
T 2wzn_A 212 SVQEEVGL-RGARVASYAINPEVGIAMDVTFAKQPHDK------GKIVPELGKGPVMD-------------VG------P 265 (354)
T ss_dssp ESCGGGTS-HHHHHHHHHHCCSEEEEEEEEECCCTTST------TCCCCCTTSCCEEE-------------ES------T
T ss_pred cceeeeee-ecccccccccccccceeeeeeeccccchh------hhhheeeccccccc-------------cc------c
Confidence 11111111 11122566667777777777655432210 00000000011111 00 0
Q ss_pred CCCChHHHHHHHHHHHhcCCC-CCceecCCCcchHHHH--HcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q 013216 350 DSSNPWWNLLEEAVRKANGKL-GKPEIFPASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYES 426 (447)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~-~~~~~~~g~~D~~~~~--~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~ 426 (447)
..................... +.....+|+||++++. ..|+|++.|||+.. .+|++||+++++++.+++++|..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggTDa~~~~~~~~Giptv~~G~g~~---~~Ht~~E~v~i~dl~~~~~ll~~ 342 (354)
T 2wzn_A 266 NINPKLRAFADEVAKKYEIPLQVEPSPRPTGTDANVMQINKEGVATAVLSIPIR---YMHSQVELADARDVDNTIKLAKA 342 (354)
T ss_dssp TSCHHHHHHHHHHHHHTTCCCEEEECCSCCSSHHHHHHTSTTCCEEEEEEEEEB---STTSTTCEEEHHHHHHHHHHHHH
T ss_pred ccCcchhhhhHHHHHHhcCCCceEEEecccccHHHHHHHhcCCCCEEEECcccC---CCCcccEEEEHHHHHHHHHHHHH
Confidence 111122222222222222211 1334456899999875 56999999999865 48999999999999999999999
Q ss_pred HHHHHHhh
Q 013216 427 IIKAYASY 434 (447)
Q Consensus 427 ~l~~l~~~ 434 (447)
++.+|.+.
T Consensus 343 ~i~~L~~~ 350 (354)
T 2wzn_A 343 LLEELKPM 350 (354)
T ss_dssp HHHHCCCC
T ss_pred HHHhCccc
Confidence 99998654
|
| >2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=204.47 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=118.1
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccC---
Q 013216 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV--- 102 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtv--- 102 (447)
+.++++++|++|++|||+| ++|.++++++.++|+++|++++.. ...||++.++|.+ +.|+|+|.||||||
T Consensus 4 ~~~~~~~~l~~lv~i~s~s--~~e~~~~~~l~~~l~~~g~~~~~d----~~gnl~a~~~g~~-~~~~ill~~H~Dtv~~~ 76 (349)
T 2gre_A 4 HTKETMELIKELVSIPSPS--GNTAKIINFIENYVSEWNVETKRN----NKGALILTVKGKN-DAQHRLLTAHVDTLGAM 76 (349)
T ss_dssp HHHHHHHHHHHHHTSCCBT--TCCHHHHHHHHHHTTTSSSEEEEC----SSSCEEEEECCSE-EEEEEEEEEECCBCEEE
T ss_pred cHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHhCCEEEEe----cCCcEEEEecCCC-CCceEEEEeccccccee
Confidence 4678999999999999985 678899999999999999987643 3458999997653 24789999999999
Q ss_pred -------------CCCCCCCCcCCCcee----------------------------------------------------
Q 013216 103 -------------PSEPSKWSHHPFGAH---------------------------------------------------- 117 (447)
Q Consensus 103 -------------p~~~~~W~~~Pf~~~---------------------------------------------------- 117 (447)
|.+ +|..+||.+.
T Consensus 77 v~~i~~~G~l~~~~~G--g~~~~~~~~~~v~i~~~~g~~~~g~i~~~~~~~h~~~~~~~~~~~~~~l~~~id~g~~~~~~ 154 (349)
T 2gre_A 77 VKEIKPDGRLSLSMIG--GFRWNSVEGEYCEIETSSGKTYTGTILMHQTSVHVYKDAGEAKRDEKNIEVRIDERVFSADE 154 (349)
T ss_dssp EEEECTTSCEEEEEES--SCCGGGTTTCEEEEECTTSCEEEEEEECC-------------------CEEEESSCCCSHHH
T ss_pred EEEECCCCeEEEEecC--CCccccccCcEEEEEcCCCCEEEEEEeCCCCCccccchhccCCCCHHHceEEeccCCCCHHH
Confidence 433 4665554211
Q ss_pred --------------------eCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHH
Q 013216 118 --------------------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (447)
Q Consensus 118 --------------------~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (447)
.. ++++||| +.|||++++++|.|++.|.+.+.+++++|+|+|+++||.|+ .|++.+
T Consensus 155 ~~~~gi~~gd~v~~~~~~~~~~-~~~i~gr-~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~G~-~g~~~~- 230 (349)
T 2gre_A 155 VRELGIEVGDFVSFDPRVQITE-SGYIKSR-HLDDKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEIGY-GGNSNI- 230 (349)
T ss_dssp HHHTTCCTTCEEEECCCCEECT-TSEEEES-CCTTHHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC-----CCCCCC-
T ss_pred HHHcCCCCCCEEEEccccEEcc-CCeEEEe-eccchHHHHHHHHHHHHHHhccCCCCceEEEEEECcccCCc-hhhccc-
Confidence 12 5899999 69999999999999999998887788999999999999986 687764
Q ss_pred ccccccCCceEEEEecC
Q 013216 178 DSHVFNSLNVGIVLDEG 194 (447)
Q Consensus 178 ~~~~~~~~~~~~~~d~g 194 (447)
.. ..++++++|.+
T Consensus 231 ---~~-~~~~~i~~D~~ 243 (349)
T 2gre_A 231 ---PE-ETVEYLAVDMG 243 (349)
T ss_dssp ---CT-TEEEEEEECCC
T ss_pred ---cc-CCCEEEEEecc
Confidence 12 24677777743
|
| >1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-23 Score=200.65 Aligned_cols=253 Identities=16% Similarity=0.187 Sum_probs=180.5
Q ss_pred HHHHHHhhhcccCCCCCCCh-hHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCC-----
Q 013216 30 IIERFRAYLQIDTSQPNPDY-TNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP----- 103 (447)
Q Consensus 30 ~~~~l~~l~~ips~s~~~~e-~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp----- 103 (447)
++++|++|+++||+| ++| .+++++|.++|+++|++++. + ...|+++.++|. .|+|+|.||||+|+
T Consensus 8 ~~~~l~~L~~~~s~s--g~e~~~~~~~l~~~l~~~g~~~~~-d---~~gnlia~~~g~---~~~i~l~aH~D~v~~~v~~ 78 (353)
T 1y0y_A 8 DYELLKKVVEAPGVS--GYEFLGIRDVVIEEIKDYVDEVKV-D---KLGNVIAHKKGE---GPKVMIAAHMDQIGLMVTH 78 (353)
T ss_dssp CHHHHHHHHHSCCBT--TCGGGTHHHHHHHHHGGGSSEEEE-C---TTCCEEEEECCS---SCEEEEEEECCBCEEEEEE
T ss_pred HHHHHHHHHhCCCCC--ccchHHHHHHHHHHHHhhCCeEEE-c---CCCCEEEEecCC---CccEEEEeccCcccEEEEE
Confidence 678999999999985 788 89999999999999998764 2 455999998764 38999999999995
Q ss_pred -----------CCCCCCCc-------------------------CCCc--------------------------------
Q 013216 104 -----------SEPSKWSH-------------------------HPFG-------------------------------- 115 (447)
Q Consensus 104 -----------~~~~~W~~-------------------------~Pf~-------------------------------- 115 (447)
.++ |.. +|+-
T Consensus 79 i~~~G~l~~~~~Gg--~~~~~~~~~~v~v~~~~g~~~~g~i~~~~~h~~~~~~~~~~~~~~~l~~d~g~~~~~~~~~~gi 156 (353)
T 1y0y_A 79 IEKNGFLRVAPIGG--VDPKTLIAQRFKVWIDKGKFIYGVGASVPPHIQKPEDRKKAPDWDQIFIDIGAESKEEAEDMGV 156 (353)
T ss_dssp ECTTSCEEEEEESS--CCGGGTTTCEEEEEEETTEEEEEEEEC-------------CCCGGGCEEECSCSSHHHHHHTTC
T ss_pred ECCCceEEEEEeCC--cchhhccCCEEEEEeCCCcEEEEEEeCCCcccCchhhccCCCChHHeEEEeCCCCHHHHHHcCC
Confidence 332 321 1100
Q ss_pred ------------eeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcccccc
Q 013216 116 ------------AHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN 183 (447)
Q Consensus 116 ------------~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 183 (447)
.... ++++||| ++|||++++++|.+++.|.+ ++++|.|+|+++||.|+ .|++.+... +
T Consensus 157 ~~Gd~v~~~~~~~~~~-~~~i~gr-a~D~k~g~a~~l~a~~~l~~----~~~~i~~~~~~~EE~g~-~G~~~~~~~--~- 226 (353)
T 1y0y_A 157 KIGTVITWDGRLERLG-KHRFVSI-AFDDRIAVYTILEVAKQLKD----AKADVYFVATVQEEVGL-RGARTSAFG--I- 226 (353)
T ss_dssp CTTCEEEECCCCEEET-TTEEEET-THHHHHHHHHHHHHHHHCCS----CSSEEEEEEESCCTTTS-HHHHHHHHH--H-
T ss_pred CCCCEEEeccCcEEec-CCeEEec-cCccHHHHHHHHHHHHHhhc----CCCeEEEEEECCcccch-hHHHHHhhc--c-
Confidence 0112 5789999 89999999999999998754 67899999999999986 699888642 2
Q ss_pred CCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCC-CCCCHHHHHHHHHHHHHhchhhhHHHHHhccccC
Q 013216 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKL-YDNSAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (447)
Q Consensus 184 ~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p-~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 262 (447)
..++++++|.+.. . .|-+.. +.+
T Consensus 227 ~~~~~i~~d~~~~---~----------------------~~p~~~~~~g------------------------------- 250 (353)
T 1y0y_A 227 EPDYGFAIDVTIA---A----------------------DIPGTPEHKQ------------------------------- 250 (353)
T ss_dssp CCSEEEEEEEEEC---C----------------------CSTTCCGGGC-------------------------------
T ss_pred CCCEEEEEecccc---c----------------------CCCCCccccC-------------------------------
Confidence 2467888764211 0 011100 000
Q ss_pred CCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCC
Q 013216 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFG 342 (447)
Q Consensus 263 ~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (447)
.+. +.+|. . +. +. ..
T Consensus 251 ----~~~---lg~G~------~-----------------------------------------i~---~~-------d~- 265 (353)
T 1y0y_A 251 ----VTH---LGKGT------A-----------------------------------------IK---IM-------DR- 265 (353)
T ss_dssp ----CCC---TTSCE------E-----------------------------------------EE---EE-------ET-
T ss_pred ----ccc---cCCCc------E-----------------------------------------EE---Ee-------CC-
Confidence 000 00110 0 11 10 00
Q ss_pred CCcccccCCCChHHHHHHHHHHHhcCCCCCc-eecCCCcchHHH--HHcCCCeEEEccCCCCCCCCCCCCccccHHHHHH
Q 013216 343 RPILTATDSSNPWWNLLEEAVRKANGKLGKP-EIFPASTDARYF--RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLK 419 (447)
Q Consensus 343 ~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~g~~D~~~~--~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~ 419 (447)
....+.++++.+++++++.+... .. ....++||+++| ...|+|++.|||+.. ..|+++|+++++++..
T Consensus 266 -----~~~~~~~l~~~l~~~a~~~gi~~-~~~~~~~ggsDa~~~~~~~~GiPtv~lg~~~~---~~Hs~~E~v~~~dl~~ 336 (353)
T 1y0y_A 266 -----SVICHPTIVRWLEELAKKHEIPY-QLEILLGGGTDAGAIHLTKAGVPTGALSVPAR---YIHSNTEVVDERDVDA 336 (353)
T ss_dssp -----TEECCHHHHHHHHHHHHHTTCCE-EEEECSSCCCTHHHHTTSTTCCCEEEEEEEEB---SCSSSCEEEEHHHHHH
T ss_pred -----CCCCCHHHHHHHHHHHHHcCCCE-EEeecCCCCchHHHHHHhCCCCcEEEEccccc---ccCCHHHhcCHHHHHH
Confidence 12335689999999999987654 33 335689999999 567999999998864 5999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 013216 420 GIDIYESIIKAYAS 433 (447)
Q Consensus 420 ~~~~~~~~l~~l~~ 433 (447)
++++|..++..++.
T Consensus 337 ~~~ll~~~l~~l~~ 350 (353)
T 1y0y_A 337 TVELMTKALENIHE 350 (353)
T ss_dssp HHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999988753
|
| >1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-21 Score=187.64 Aligned_cols=255 Identities=15% Similarity=0.129 Sum_probs=174.3
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCC---
Q 013216 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS--- 104 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~--- 104 (447)
.+++++|++|+++||+| ++|.+++++|.++|+++|++++. + ...|+++.++|.+ .|.|+|.||||||+.
T Consensus 5 ~~~~~~l~~Lv~~~s~s--g~e~~~~~~l~~~l~~~g~~~~~-d---~~gnlia~~~g~~--~~~i~l~aH~DtV~~~v~ 76 (346)
T 1vho_A 5 METGKLLMELSNLDGPS--GYETNVVSYIKSVIEPFVDEAKT-T---RHGSLIGYKKGKG--IGKLAFFAHVDEIGFVVS 76 (346)
T ss_dssp CCHHHHHHHHHHSCCBT--TCCHHHHHHHHHHHGGGCSEEEE-C---TTSCEEEEECCSS--SCEEEEEEECCBCCEEEE
T ss_pred HHHHHHHHHHHcCCCCC--cchHHHHHHHHHHHHhhCCEEEE-e---cCCcEEEEEcCCC--CceEEEEecCcccceEeE
Confidence 45789999999999975 78889999999999999998764 3 4459999987752 488999999999952
Q ss_pred ----------CCCCCCcCCC--------------cee-------------------------------------------
Q 013216 105 ----------EPSKWSHHPF--------------GAH------------------------------------------- 117 (447)
Q Consensus 105 ----------~~~~W~~~Pf--------------~~~------------------------------------------- 117 (447)
.-.+|...++ .+.
T Consensus 77 ~i~~G~l~~~~~Gg~~~~~~~g~~~~~~~~~g~~~G~i~~~~~h~~~~~~~~~~~~~~~l~id~g~~~eei~~G~~~~~~ 156 (346)
T 1vho_A 77 KVEGQFARLEPVGGVDPKVVYASKVRIYTKNGIERGVIGMLAPHLQDSESRKKVPTYDEIFVDLSLCERGVRVGDIAVID 156 (346)
T ss_dssp EEETTEEEEEEC--------CCCEEEEEETTEEEEEETTCCCSCCCCHHHHHTSCCTTCCEEEGGGSSSCCCTTCEEEEC
T ss_pred EecCCeEEEEEeCCccCcccccCEEEEEcCCCcEEEEEcCCCcccCchhhcccCCChhHeEEEeccchhcCCCCCEEEEc
Confidence 0123532211 111
Q ss_pred ----eCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEec
Q 013216 118 ----LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDE 193 (447)
Q Consensus 118 ----~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~ 193 (447)
+. +++++||+ .|+|.++++++.+++.|.+.+ ++.++.++|+.+||.|+ .|+..... .+. .++.+++|.
T Consensus 157 ~~~~~~-g~~i~g~~-~D~r~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~-~Ga~~~~~--~i~-~~~~i~~D~ 228 (346)
T 1vho_A 157 QTAFET-NGKVVGKA-LDNRASCGVLVKVLEFLKRYD--HPWDVYVVFSVQEETGC-LGALTGAY--EIN-PDAAIVMDV 228 (346)
T ss_dssp CCCEEE-TTEEEETT-HHHHHHHHHHHHHHHHHTTCC--CSSEEEEEEECTTSSSH-HHHHHTTC--CCC-CSEEEEEEE
T ss_pred cchhhh-cCeEEecc-CccHHHHHHHHHHHHHhhhcC--CCceEEEEEECCcccch-hhHHHHhc--ccC-CCEEEEeec
Confidence 11 36799994 799999999999999987654 56899999999999985 67776432 122 355666552
Q ss_pred CCcCcCCcceeEeeeeeeEEEEEEEeecCCccCC-CCCCCHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeee
Q 013216 194 GLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-LYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAF 272 (447)
Q Consensus 194 g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~-p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 272 (447)
. |++. |.. + .
T Consensus 229 ~-----------------------------~~~~~~~~-~------------------------------------~--- 239 (346)
T 1vho_A 229 T-----------------------------FASEPPFS-D------------------------------------H--- 239 (346)
T ss_dssp E-----------------------------CCCCTTSC-C------------------------------------C---
T ss_pred c-----------------------------cccCCCCC-c------------------------------------c---
Confidence 1 1110 000 0 0
Q ss_pred eecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCC
Q 013216 273 LKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSS 352 (447)
Q Consensus 273 i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 352 (447)
.. ...+..++ . ....+
T Consensus 240 ~~---------------------------------------------~~~g~~i~------------~-------~~~~~ 255 (346)
T 1vho_A 240 IE---------------------------------------------LGKGPVIG------------L-------GPVVD 255 (346)
T ss_dssp CC---------------------------------------------TTSCCEEE------------C-------STTSC
T ss_pred cc---------------------------------------------cCCCceEE------------e-------CCcCC
Confidence 00 00112333 1 12346
Q ss_pred ChHHHHHHHHHHHhcCCCCCceec-C-CCcchHHHH--HcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 013216 353 NPWWNLLEEAVRKANGKLGKPEIF-P-ASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESII 428 (447)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~-~-g~~D~~~~~--~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l 428 (447)
.++++.+++++++.+.+. ..... . |+||++++. ..|+|++.+||+.. ..|+++|+++++++..++++|..++
T Consensus 256 ~~l~~~~~~~a~~~gi~~-~~~~~~g~ggsDa~~~~~~~~gipt~~lg~~~~---~~Hs~~E~~~~~dl~~~~~ll~~~~ 331 (346)
T 1vho_A 256 RNLVQKIIEIAKKHNVSL-QEEAVGGRSGTETDFVQLVRNGVRTSLISIPLK---YMHTPVEMVDPRDVEELARLLSLVA 331 (346)
T ss_dssp HHHHHHHHHHHHHTTCCC-EEESSCCC----CTTHHHHHTTCEEEEEEEECB---STTSTTEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCE-EEEeCCCCCCchHHHHHHhCCCCcEEEEehhhc---ccccHHHhcCHHHHHHHHHHHHHHH
Confidence 788999999999987665 44434 4 889999884 57999999998865 4999999999999999999999999
Q ss_pred HHHHhhc
Q 013216 429 KAYASYV 435 (447)
Q Consensus 429 ~~l~~~~ 435 (447)
..++...
T Consensus 332 ~~~~~~~ 338 (346)
T 1vho_A 332 VELEVEG 338 (346)
T ss_dssp HHCC---
T ss_pred HHhhhhc
Confidence 9876543
|
| >3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=189.47 Aligned_cols=250 Identities=14% Similarity=0.118 Sum_probs=172.3
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEe--e-cCCCCeEEEEecCCCCCCCeEEEeecccc
Q 013216 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE--F-AKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (447)
Q Consensus 25 ~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~--~-~~~~~nl~~~~~g~~~~~~~ill~~H~Dt 101 (447)
...++++++|++|+++||.| ++|.+++++|.++|+++|++++..+ . ..+..|+++.++| + |+|+|.|||||
T Consensus 14 ~~~~~~~~~l~~Lv~i~s~s--g~e~~v~~~l~~~l~~~g~~v~~d~~~~~~~~~gnlia~~~g---~-~~ill~aH~Dt 87 (321)
T 3cpx_A 14 NLYFQGMQLLKELCSIHAPS--GNEEPLKDFILEYIRSNAGSWSYQPVIYADNDLQDCIVLVFG---N-PRTAVFAHMDS 87 (321)
T ss_dssp GGGCCHHHHHHHHHHSCCBT--TCCHHHHHHHHHHHHHHGGGSSSCCEEECSGGGTTCEEEEES---S-CSEEEEEECCB
T ss_pred hHHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHhhCCeEEEccccccccCCccEEEEecC---C-ceEEEEecCCc
Confidence 34567899999999999975 7888999999999999999766422 0 1124599999876 3 78999999999
Q ss_pred CC-----------CCC-CCCCcC---------CCce-----------------------------eeCCCCcEEecCccc
Q 013216 102 VP-----------SEP-SKWSHH---------PFGA-----------------------------HLDSQGNIFARGSQD 131 (447)
Q Consensus 102 vp-----------~~~-~~W~~~---------Pf~~-----------------------------~~~~~g~l~GrG~~D 131 (447)
|+ .++ ..|... ++.+ +.. +|+++|| +.|
T Consensus 88 V~~~v~~i~~~~~~Gg~~~~~~~~v~~~~~~g~~~gvi~~~ee~~~ida~~lv~~Gd~v~~~~~~~~~-~g~i~~~-~~D 165 (321)
T 3cpx_A 88 IGFTVSYNNHLHPIGSPSAKEGYRLVGKDSNGDIEGVLKIVDEEWMLETDRLIDRGTEVTFKPDFREE-GDFILTP-YLD 165 (321)
T ss_dssp CEEEECSTTBEEEESSCCCCTTCEEEEEETTEEEEEEEECGGGSCEEECSSCCCTTCEEEECCCCEEE-TTEEECT-THH
T ss_pred CCeEecccCCeEEcCChhhcccCEEEEEeCCCceeeeECCccHHHHHHHHhcCCCCCEEEeccCcEEE-cCEEEEc-CCc
Confidence 94 332 122111 1111 111 3788889 589
Q ss_pred chhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHc--cccccCCceEEEEecCCcCcCCcceeEeeee
Q 013216 132 MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD--SHVFNSLNVGIVLDEGLASTTEDYRAFYAER 209 (447)
Q Consensus 132 ~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~--~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~ 209 (447)
||+++++++.+++.+. . ++++|+.+||.|+ .|++.... ...+ ..++++++|.+.. ..
T Consensus 166 ~k~G~aa~l~al~~l~------~--i~~~~t~~EEvG~-~Ga~~a~~~~~~~~-~~~~~i~~D~~~~---~~-------- 224 (321)
T 3cpx_A 166 DRLGVWTALELAKTLE------H--GIIAFTCWEEHGG-GSVAYLARWIYETF-HVKQSLICDITWV---TE-------- 224 (321)
T ss_dssp HHHHHHHHHHHTTTCC------S--EEEEEESSTTTTC-CSHHHHHHHHHHHH-CCCEEEECCCEEC---CS--------
T ss_pred CHHHHHHHHHHHHHhc------C--cEEEEECCccCch-hcchhhhhcccccc-CCCEEEEEeCccc---cC--------
Confidence 9999999999987643 1 9999999999986 68875321 1122 2467888764311 11
Q ss_pred eeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccC
Q 013216 210 CPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289 (447)
Q Consensus 210 G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP 289 (447)
.. .+ ..|
T Consensus 225 ------------------------------------~~-------------------~~-----~~G------------- 231 (321)
T 3cpx_A 225 ------------------------------------GV-------------------EA-----GKG------------- 231 (321)
T ss_dssp ------------------------------------SS-------------------CT-----TSC-------------
T ss_pred ------------------------------------Cc-------------------cc-----CCC-------------
Confidence 00 00 000
Q ss_pred CceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCC
Q 013216 290 SEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGK 369 (447)
Q Consensus 290 ~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~ 369 (447)
..++ +. . . ...+.++++.+++++++.+.+
T Consensus 232 ----------------------------------~~i~---~~-------~--~-----~~~~~~l~~~~~~~a~~~gi~ 260 (321)
T 3cpx_A 232 ----------------------------------VAIS---MR-------D--R-----MIPRKKYVNRIIELARQTDIP 260 (321)
T ss_dssp ----------------------------------EEEE---EE-------S--S-----SCCCHHHHHHHHHHHTTSSCC
T ss_pred ----------------------------------cEEE---EC-------C--C-----CCCCHHHHHHHHHHHHHcCCC
Confidence 1122 11 1 0 123566777777777777665
Q ss_pred CCCce-ecCCCcchHHH--HHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013216 370 LGKPE-IFPASTDARYF--RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 431 (447)
Q Consensus 370 ~~~~~-~~~g~~D~~~~--~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l 431 (447)
. +.. ..+|+||++++ +..|+|++.+||+.. ..|+++|++.++++...++++..++..+
T Consensus 261 ~-q~~~~~~GGsD~~~~~~s~~Gipt~~lG~~~~---~~Hs~~E~~~~~dl~~~~~ll~~~~~~l 321 (321)
T 3cpx_A 261 F-QLEVEGAGASDGRELQLSPYPWDWCFIGAPEK---DAHTPNECVHKKDIESMVGLYKYLMEKL 321 (321)
T ss_dssp E-EEEECSSCCCHHHHHHHSSSCCBCCBEECEEB---STTSTTCEEEHHHHHHHHHHHHHHHHHC
T ss_pred E-EEEeCCCCCccHHHHHHhCCCCCEEEEchhhc---ccchhhhheeHHHHHHHHHHHHHHHHhC
Confidence 4 332 25789999998 556999999999876 5999999999999999999999988653
|
| >1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-20 Score=178.41 Aligned_cols=254 Identities=16% Similarity=0.204 Sum_probs=178.5
Q ss_pred HHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCC--------
Q 013216 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP-------- 103 (447)
Q Consensus 32 ~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp-------- 103 (447)
++|++|+++||+| ++|.++++++.++|+++|++++. + ...|+++.++|. +.|+|+|.||||||+
T Consensus 7 ~~l~~Lv~~~s~s--g~e~~~~~~l~~~l~~~g~~v~~-d---~~gnlia~~~g~--~~~~vll~aH~DtV~~~v~~i~~ 78 (348)
T 1ylo_A 7 SLLKALSEADAIA--SSEQEVRQILLEEAARLQKEVRF-D---GLGSVLIRLNES--TGPKVMICAHMDEVGFMVRSISR 78 (348)
T ss_dssp HHHHHHHHSCCBT--TBCHHHHHHHHHHHHHTTCCEEE-C---TTCCEEEECCCC--SSCEEEEEEECCCCEEEEEEECT
T ss_pred HHHHHHHcCCCCC--CchHHHHHHHHHHHHhhCCEEEE-e---cCCCEEEEecCC--CCceEEEEEcCCccceEEEEECC
Confidence 7899999999985 78889999999999999998763 3 344999998765 348999999999996
Q ss_pred --------CCCCCCC---c-------------------------------------------------------CCCcee
Q 013216 104 --------SEPSKWS---H-------------------------------------------------------HPFGAH 117 (447)
Q Consensus 104 --------~~~~~W~---~-------------------------------------------------------~Pf~~~ 117 (447)
.+.-.|. . ++|..
T Consensus 79 ~G~~~~~~~Gg~~~~~~~g~~v~~~~~~G~~~~h~~~~~~~~~~~~~l~id~G~~s~~~~~~~gi~~g~~i~~~~~~~~- 157 (348)
T 1ylo_A 79 EGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARTYDEVMQAGIRPGDRVTFDTTFQV- 157 (348)
T ss_dssp TCCEEEEEESCCCGGGSSSEEEEEECTTCCEEEEEEEEEEETTEEEEEEEECSCCSHHHHHHTTCCTTCEEEECCCCEE-
T ss_pred CCeEEEEecCCcchhhccCCEEEEEeCCCCCCcchhhhhccCCChhHEEEEecCCCHHHHHHcCCCCCCEEEEccccEE-
Confidence 2211110 0 11211
Q ss_pred eCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEecCCcC
Q 013216 118 LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAS 197 (447)
Q Consensus 118 ~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~ 197 (447)
.. +|+++|| +.|||.++++++.+++.+.+.+ ++.++.++|+.+||.|+ .|+..... .+. .++.+++|....
T Consensus 158 ~~-~~~~~~~-~~D~k~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~-~Ga~~~~~--~i~-~~~~i~~D~~~~- 228 (348)
T 1ylo_A 158 LP-HQRVMGK-AFDDRLSCYLLVTLLRELHDAE--LPAEVWLVASSSEEVGL-RGGQTATR--AVS-PDVAIVLDTACW- 228 (348)
T ss_dssp ET-TTEEEET-THHHHHHHHHHHHHHHHHTTCC--CSSEEEEEEESCCTTSS-HHHHHHHH--HHC-CSEEEEECCCCC-
T ss_pred ec-CCEEEec-CcccHHHHHHHHHHHHHhhhcC--CCceEEEEEEcccccch-hHHHHhhc--ccC-CCEEEEEecccc-
Confidence 24 7899999 6899999999999999987653 56899999999999986 68766543 222 356677763210
Q ss_pred cCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCC
Q 013216 198 TTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGT 277 (447)
Q Consensus 198 p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~ 277 (447)
+ ..|.. +. .. . +.-|
T Consensus 229 ----------------------~-----~~~~~-~~-----------~~--------------------~-----~~~~- 243 (348)
T 1ylo_A 229 ----------------------A-----KNFDY-GA-----------AN--------------------H-----RQIG- 243 (348)
T ss_dssp ----------------------S-----STTCC-ST-----------TC--------------------C-----CCTT-
T ss_pred ----------------------C-----CCCCC-Cc-----------cc--------------------c-----ccCC-
Confidence 0 01110 10 00 0 0000
Q ss_pred CCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCCChHHH
Q 013216 278 PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWN 357 (447)
Q Consensus 278 ~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 357 (447)
.+..++ +. .. ....+..+++
T Consensus 244 --------------------------------------------~G~~i~---~~-------~~------~~~~~~~l~~ 263 (348)
T 1ylo_A 244 --------------------------------------------NGPMLV---LS-------DK------SLIAPPKLTA 263 (348)
T ss_dssp --------------------------------------------SCCEEE---EE-------CS------SCBCCHHHHH
T ss_pred --------------------------------------------CCcEEE---Ee-------CC------CCCCCHHHHH
Confidence 011122 11 00 1223568889
Q ss_pred HHHHHHHHhcCCCCCc-eecCCCcchHHHH--HcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013216 358 LLEEAVRKANGKLGKP-EIFPASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 358 ~~~~a~~~~~~~~~~~-~~~~g~~D~~~~~--~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~ 432 (447)
.+++++++.+.+. .. ...+|+||++++. ..|+|++.+||+.. ..|+++|+++++++..++++|..++..++
T Consensus 264 ~~~~~a~~~gi~~-~~~~~~~ggsDa~~~~~~~~gipt~~lg~~~~---~~Hs~~E~~~~~d~~~~~~ll~~~~~~l~ 337 (348)
T 1ylo_A 264 WIETVAAEIGVPL-QADMFSNGGTDGGAVHLTGTGVPTLVMGPATR---HGHCAASIADCRDILQMEQLLSALIQRLT 337 (348)
T ss_dssp HHHHHHHHHTCCC-EEEECSSCCCHHHHHHTSTTCCCEEEEECCCB---SCSSSCEEEEHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCCe-EEeecCCCcchHHHHHHhcCCCCEEEECcccC---cCCCcceEeeHHHHHHHHHHHHHHHHHhh
Confidence 9999999988765 33 3356899999995 45999999999875 49999999999999999999999998764
|
| >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=174.32 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=122.3
Q ss_pred CCChhHHHHHHHhhhcccCCC-CCCChhHHHHHHHHHHHHCC--Cc-eEEEeec---CCCCeEEEEecCCCCCCCeEEEe
Q 013216 24 AKSDDSIIERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALS--LE-SQTLEFA---KNKPLILLKWPGSNPQLPSILLN 96 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s-~~~~e~~~~~~i~~~l~~~G--~~-~~~~~~~---~~~~nl~~~~~g~~~~~~~ill~ 96 (447)
+.+.++++++|++|++|++.. .++.+.++++||.++|+++| ++ ++..... .+.+||+++++|.++..+.|+|.
T Consensus 16 ~~~~~~~~~~l~~L~~i~sr~~~s~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~nvi~~~~g~~~~~~~v~l~ 95 (299)
T 1rtq_A 16 QVDASQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIG 95 (299)
T ss_dssp GCCHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETTEEEEEEEEEECCSSEEEEEEEEE
T ss_pred hcCHHHHHHHHHHHhCcCCCCCCCchHHHHHHHHHHHHHHhcCCcccceeeeeccCCCCCceEEEEEECCCCCCCEEEEE
Confidence 346789999999999999753 34567899999999999986 43 3322210 12469999998864224789999
Q ss_pred eccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHH
Q 013216 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (447)
Q Consensus 97 ~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (447)
||+|+||. .|. ++++||||+.|||++++++|++++.|.+.+.+++++|+|+|+++||.|. .|++.+
T Consensus 96 aH~D~v~~---~~~----------~~~~~~~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~-~Gs~~~ 161 (299)
T 1rtq_A 96 GHLDSTIG---SHT----------NEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVGL-RGSQDL 161 (299)
T ss_dssp EECCCCSS---TTC----------CTTCCCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTS-HHHHHH
T ss_pred eccccCCC---cCc----------CCCcccCCCcccHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCccCCc-hhHHHH
Confidence 99999983 353 5689999999999999999999999999888889999999999999985 799999
Q ss_pred Hcccc--ccCCceEEEEec
Q 013216 177 ADSHV--FNSLNVGIVLDE 193 (447)
Q Consensus 177 ~~~~~--~~~~~~~~~~d~ 193 (447)
+++.. ..++++.+++|.
T Consensus 162 ~~~~~~~~~~~~~~i~~D~ 180 (299)
T 1rtq_A 162 ANQYKSEGKNVVSALQLDM 180 (299)
T ss_dssp HHHHHHTTCEEEEEEECSC
T ss_pred HHhhhhccccEEEEEEecC
Confidence 87543 223445666664
|
| >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=171.55 Aligned_cols=148 Identities=18% Similarity=0.309 Sum_probs=122.0
Q ss_pred CCChhHHHHHHHhhhcccCCCCC------CChhHHHHHHHHHHHHCCCceEEEeecC---CCCeEEEEecCCCCCCCeEE
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPN------PDYTNASKFILAQAEALSLESQTLEFAK---NKPLILLKWPGSNPQLPSIL 94 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~------~~e~~~~~~i~~~l~~~G~~~~~~~~~~---~~~nl~~~~~g~~~~~~~il 94 (447)
+.+.++++++|++|++|||+|+. .++.++++||.++|+++|++++...... ..+||++.++|.++ .+.|+
T Consensus 3 ~i~~~~~~~~l~~L~~i~s~s~~~r~~~~~~e~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~nvi~~~~g~~~-~~~i~ 81 (284)
T 1tkj_A 3 DIPLANVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSGGATGYNLIANWPGGDP-NKVLM 81 (284)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEETTEEEEEEEEECSCSEE-EEEEE
T ss_pred cCCHHHHHHHHHHHHcccccCCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeccCCCCceeEEEEEeCCCC-CCEEE
Confidence 56789999999999999998731 1578999999999999999988654421 24699999987533 37899
Q ss_pred EeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHH
Q 013216 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (447)
Q Consensus 95 l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (447)
|.+|+|+||. |||+.|+|++++++|++++.|.+.+.+++++|+|+|+++||.|. .|++
T Consensus 82 l~aH~D~v~~---------------------g~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~-~Gs~ 139 (284)
T 1tkj_A 82 AGAHLDSVSS---------------------GAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGL-IGSK 139 (284)
T ss_dssp EEEECCCCTT---------------------SCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTS-HHHH
T ss_pred EEeecCCCCC---------------------CCCCccChHHHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCC-cCHH
Confidence 9999999985 35899999999999999999999888889999999999999985 7999
Q ss_pred HHHcccc---ccCCceEEEEecC
Q 013216 175 KFADSHV---FNSLNVGIVLDEG 194 (447)
Q Consensus 175 ~~~~~~~---~~~~~~~~~~d~g 194 (447)
.++++.. ..++++.+++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~D~~ 162 (284)
T 1tkj_A 140 FYVNNLPSADRSKLAGYLNFDMI 162 (284)
T ss_dssp HHHHHSCHHHHTTEEEEEEECCC
T ss_pred HHHhhCccchhhcEEEEEEecCC
Confidence 9987632 2345677777753
|
| >3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-18 Score=160.73 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=127.7
Q ss_pred CCCChhHHHHHHHhhhcccCCC-CCCChhHHHHHHHHHHHHCCCceEEEeec----CC----CCeEEEEecCCCCCCCeE
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALSLESQTLEFA----KN----KPLILLKWPGSNPQLPSI 93 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s-~~~~e~~~~~~i~~~l~~~G~~~~~~~~~----~~----~~nl~~~~~g~~~~~~~i 93 (447)
.+-+.+++++.+++|+++.+.. .+..+.++++||.++|+++|++++..... .+ ..||+++++|.. .+.|
T Consensus 20 ~~~~~~~~~~~l~~l~~~~~R~~~s~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~g~~--~~~i 97 (309)
T 3tc8_A 20 PDFNADSAYAYVANQVAFGPRVPNTAAHKACGDYLASELKRFGAKVYQQEAILTAYDGTKLEARNIIGSFDPEN--SKRV 97 (309)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTC--SSEE
T ss_pred cccCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEeeccccCCCcccceEEEEEECCCC--CceE
Confidence 3457899999999999887642 34568899999999999999998765432 12 369999999863 4899
Q ss_pred EEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCc----
Q 013216 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG---- 169 (447)
Q Consensus 94 ll~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~---- 169 (447)
+|.||+|+|+.++ .+||. .+ ++.+| +|+.|+++|+|++|++++.|.+.+ ++++|.|+++.+||.|.
T Consensus 98 ll~aH~Dsv~~~~----~~p~~--~~-~~~~~-~Ga~D~~sGva~~Le~ar~l~~~~--~~~~i~f~~~~~EE~Gl~~~~ 167 (309)
T 3tc8_A 98 LLFAHWDSRPYSD----HDPDP--SK-HRTPL-DGADDGGSGVGALLEIARQIGQKA--PGIGIDIIFFDAEDYGTPEFV 167 (309)
T ss_dssp EEEEECCCCSCCT----TCSSG--GG-TTSCC-CCTTTTHHHHHHHHHHHHHHHHSC--CSSEEEEEEECSCSCSCCTTC
T ss_pred EEEecccCCCCCC----CCccc--cC-CCccc-cCcccchHhHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccc
Confidence 9999999999874 35775 44 78888 999999999999999999999875 78999999999999884
Q ss_pred --------ccCHHHHHccccc--cCCceEEEEec
Q 013216 170 --------HDGAEKFADSHVF--NSLNVGIVLDE 193 (447)
Q Consensus 170 --------~~G~~~~~~~~~~--~~~~~~~~~d~ 193 (447)
+.|+++++++... .++.+.+++|.
T Consensus 168 ~~~~~ds~~~GS~~~~~~~~~~~~~~~~~inlD~ 201 (309)
T 3tc8_A 168 TDYTPDSWCLGTQFWAKNPHVPNYTAEYGILLDM 201 (309)
T ss_dssp CSCCTTCSCHHHHHHHHSCSSTTCCCSEEEEEES
T ss_pred ccccccccchhHHHHHhCCCccccceEEEEEecc
Confidence 2699999876432 23456677774
|
| >3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=158.29 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=112.0
Q ss_pred CCCChhHHHHHHHhhhcccCCC-CCCChhHHHHHHHHHHHHCCCceEEEeec----CC----CCeEEEEecCCCCCCCeE
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALSLESQTLEFA----KN----KPLILLKWPGSNPQLPSI 93 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s-~~~~e~~~~~~i~~~l~~~G~~~~~~~~~----~~----~~nl~~~~~g~~~~~~~i 93 (447)
.+-+.+++++.|++|++|++.. .+..+.++++||.++|+++|++++..... .+ ..||+++++|.. .+.|
T Consensus 22 ~~~~~~~~~~~l~~L~~~~~R~~gs~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~g~~--~~~i 99 (314)
T 3gux_A 22 PEFDADSAYQYIQVQADFGPRVPNTQAHKECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPES--KKRI 99 (314)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTC--SSEE
T ss_pred CCCCHHHHHHHHHHHHccCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeeccccCCCcccceEEEEEECCCC--CceE
Confidence 3457899999999999998754 34568899999999999999998765432 12 369999998863 4899
Q ss_pred EEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCc----
Q 013216 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG---- 169 (447)
Q Consensus 94 ll~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~---- 169 (447)
+|.||+|+|+.++ .+|+. .. ++ .+++|+.|++++++++|++++.|.+.+ ++++|.|+++.+||.|.
T Consensus 100 ll~aH~Dsv~~~~----~~p~~--~~-~~-~~~~GA~D~~sGva~~Le~ar~l~~~~--~~~~i~fv~~~~EE~Gl~~~~ 169 (314)
T 3gux_A 100 LLCAHWDSRPYAD----NDPDP--KN-HH-TPILGVNDGASGVGVLLEIARQIQKEQ--PALGIDIVFFDSEDYGIPEFY 169 (314)
T ss_dssp EEEEECCCCC----------------------------CHHHHHHHHHHHHHHHHSC--CSSEEEEEEECSCCC------
T ss_pred EEEccccCCCcCC----CCccc--cc-CC-cccCCCcccHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCccccccccc
Confidence 9999999999863 24553 32 44 456999999999999999999999875 78999999999999884
Q ss_pred ---------ccCHHHHHccccc--cCCceEEEEec
Q 013216 170 ---------HDGAEKFADSHVF--NSLNVGIVLDE 193 (447)
Q Consensus 170 ---------~~G~~~~~~~~~~--~~~~~~~~~d~ 193 (447)
..|+++++++... .++.+.+++|.
T Consensus 170 ~~~~~~ds~~~GS~~~~~~~~~~~~~~~~~inlDm 204 (314)
T 3gux_A 170 DGKYKQDTWCLGSQYWARTPHVQNYNARYGILLDM 204 (314)
T ss_dssp -----CTTSCHHHHHHHHSCSSTTCCCSEEEEEES
T ss_pred cccccccccchhHHHHHhCCcccccceeEEEEEec
Confidence 1699999876432 33456677764
|
| >3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-15 Score=148.19 Aligned_cols=257 Identities=17% Similarity=0.169 Sum_probs=173.2
Q ss_pred HHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC---
Q 013216 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE--- 105 (447)
Q Consensus 29 ~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~--- 105 (447)
+++++|++|+++||+| +.|.++++++.++|+++|++++. + ...||++.++|.+++.|+|+|.||||+|+.-
T Consensus 4 ~~~~~l~~L~~ips~S--G~E~~v~~~l~~~l~~~g~~~~~-D---~~GNli~~~~g~~~~~~~v~l~aHmD~Vg~mV~~ 77 (355)
T 3kl9_A 4 TLFSKIKEVTELAAVS--GHEAPVRAYLREKLTPHVDEVVT-D---GLGGIFGIKHSEAVDAPRVLVASHMDEVGFMVSE 77 (355)
T ss_dssp HHHHHHHHHHTSCCBT--TCCHHHHHHHHHHHGGGSSEEEE-C---TTSCEEEEECCCSTTCCEEEEEEECCBCEEEEEE
T ss_pred HHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCEEEE-C---CCCeEEEEECCcCCCCCeEEEEeccccccceEEE
Confidence 6789999999999975 89999999999999999998774 3 4459999998764245899999999999320
Q ss_pred ----------C-CCCCcC--------------C-Cceee------------------------C----------------
Q 013216 106 ----------P-SKWSHH--------------P-FGAHL------------------------D---------------- 119 (447)
Q Consensus 106 ----------~-~~W~~~--------------P-f~~~~------------------------~---------------- 119 (447)
+ .+|... + +.+.+ +
T Consensus 78 I~~~G~l~~~~iGG~~~~~~~~~~v~i~t~~g~~~~Gvig~~~~H~~~~~~~~~~~~~~~~~iD~g~~s~ee~~~~GI~~ 157 (355)
T 3kl9_A 78 IKPDGTFRVVEIGGWNPMVVSSQRFKLLTRDGHEIPVISGSVPPHLTRGKGGPTMPAIADIVFDGGFADKAEAESFGIRP 157 (355)
T ss_dssp ECTTSCEEEEEESCCCTTTCSSCEEEEECTTSCEEEEEEC---------------CCGGGSCEECCCSSHHHHHHTTCCT
T ss_pred ECCCCEEEEEecCCccccccCCCEEEEEcCCCCEEEEEEeCccccccChhhccCCCChhhEEEEeccCCHHHHHHcCCCC
Confidence 0 122100 1 11110 0
Q ss_pred -------------C-CCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCC
Q 013216 120 -------------S-QGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (447)
Q Consensus 120 -------------~-~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (447)
. ++++.|| +.|++.++++++.+++.|.+. +++.+++++|+..||.|. .|+...... +. .
T Consensus 158 Gd~v~~d~~~~~~~~~~~i~s~-~lDnr~g~~~~l~~l~~l~~~--~~~~~v~~~ft~qEEvG~-~Ga~~a~~~--~~-p 230 (355)
T 3kl9_A 158 GDTIVPDSSAILTANEKNIISK-AWDNRYGVLMVSELAEALSGQ--KLGNELYLGSNVQEEVGL-RGAHTSTTK--FD-P 230 (355)
T ss_dssp TCEEEECCCCEECTTSSEEEES-CHHHHHHHHHHHHHHHHHSSC--CCSSEEEEEEESCCTTTS-HHHHHHHHH--HC-C
T ss_pred CCEEEeccceEEecCCCEEEee-ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEECccccCc-chhHHHHhc--cC-C
Confidence 2 3467777 599999999999999988654 467899999999999996 677654332 21 2
Q ss_pred ceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHHHHhccccCCCc
Q 013216 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV 265 (447)
Q Consensus 186 ~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 265 (447)
|+++.+|.+..
T Consensus 231 d~~i~~D~~~a--------------------------------------------------------------------- 241 (355)
T 3kl9_A 231 EVFLAVDCSPA--------------------------------------------------------------------- 241 (355)
T ss_dssp SEEEEEEEEEC---------------------------------------------------------------------
T ss_pred CEEEEecCccC---------------------------------------------------------------------
Confidence 33333332110
Q ss_pred ceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeeccccccccccccCCCCc
Q 013216 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPI 345 (447)
Q Consensus 266 ~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 345 (447)
+. . |+. .. ....+..+. +. ..
T Consensus 242 ----------~d------~----p~~------------------------~~-~lg~G~~i~---~~--------d~--- 262 (355)
T 3kl9_A 242 ----------GD------V----YGG------------------------QG-KIGDGTLIR---FY--------DP--- 262 (355)
T ss_dssp ----------CG------G----GTS------------------------SC-CTTSCEEEE---EE--------ET---
T ss_pred ----------CC------C----CCc------------------------cc-ccCCCcEEE---Ee--------cC---
Confidence 00 0 110 00 011122222 11 00
Q ss_pred ccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHH--cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013216 346 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE--RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 423 (447)
Q Consensus 346 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~--~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~ 423 (447)
....+..+.+.+++++++.+.+. +.....|+||++.+.. .|+|++.+|++.. ..|+|.|+++++++..++++
T Consensus 263 --~~~~~~~l~~~l~~~a~~~gIp~-q~~~~ggGtDa~~i~~a~~Gipt~~igvp~~---~~Hs~~E~~~~~Di~~~~~l 336 (355)
T 3kl9_A 263 --GHLLLPGMKDFLLTTAEEAGIKY-QYYCGKGGTDAGAAHLKNGGVPSTTIGVCAR---YIHSHQTLYAMDDFLEAQAF 336 (355)
T ss_dssp --TEECCHHHHHHHHHHHHHTTCCE-EEEECSSCCTHHHHTTSTTCCCEEEEEEEEB---SCSSSCEEEEHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHcCCCE-EEECCCcchHHHHHHHhCCCCCEEEEccCcC---CCCCcceEeeHHHHHHHHHH
Confidence 01224567777777777777654 3333458999998864 6899987876655 39999999999999999999
Q ss_pred HHHHHHHHH
Q 013216 424 YESIIKAYA 432 (447)
Q Consensus 424 ~~~~l~~l~ 432 (447)
+..++..+.
T Consensus 337 l~~~l~~l~ 345 (355)
T 3kl9_A 337 LQALVKKLD 345 (355)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHhC
Confidence 999987764
|
| >2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=153.32 Aligned_cols=138 Identities=18% Similarity=0.194 Sum_probs=108.7
Q ss_pred CChhHH-HHHHHhhhcccCCCCCCChhHHHHHHHHHHHH--CCCceEEEeecC-------CCCeEEEEecCCCCCCCeEE
Q 013216 25 KSDDSI-IERFRAYLQIDTSQPNPDYTNASKFILAQAEA--LSLESQTLEFAK-------NKPLILLKWPGSNPQLPSIL 94 (447)
Q Consensus 25 ~~~~~~-~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~--~G~~~~~~~~~~-------~~~nl~~~~~g~~~~~~~il 94 (447)
.+.+++ .++|++|+..+... +..+.++++||.++|++ +|++++...... ...||+++++|. ..+.|+
T Consensus 28 ~~~~~~~~~~l~~L~~~r~~~-s~~~~~~~~~l~~~l~~~~~G~~v~~~~~~~~~~~g~~~~~Nvi~~~~g~--~~~~i~ 104 (329)
T 2afw_A 28 TSISEMWQNDLQPLLIERYPG-SPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPT--AKRHLV 104 (329)
T ss_dssp CCHHHHHHHTTGGGCSCCCTT-SHHHHHHHHHHHHHHHTSSSCCEEEEEEEEECCTTSSEEEEEEEEESSTT--SSEEEE
T ss_pred cCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHHHhhCCCCEEEEEEEEecCCCCCceEeEEEEEECCC--CCcEEE
Confidence 367888 89999997555432 34566899999999999 999887654321 146999999875 348899
Q ss_pred EeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHc--------CCCCceeEEEEeecCcc
Q 013216 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS--------GFQPVRSVYLSFVPDEE 166 (447)
Q Consensus 95 l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~--------~~~~~~~i~~~~~~~EE 166 (447)
|.||+|+||.+ .| ++++ |+|++|+++|+|++|++++.|.+. +.+++++|.|+++.+||
T Consensus 105 l~aH~Dsv~~~--~~-----------~~~~-~~Ga~D~~sGva~~le~ar~l~~~~~~~~~~~g~~~~~~i~~~~~~~EE 170 (329)
T 2afw_A 105 LACHYDSKYFS--HW-----------NNRV-FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEE 170 (329)
T ss_dssp EEEECCCCCCC--CB-----------TTBC-CCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCS
T ss_pred EEEeccCCCcC--cc-----------cCcC-CCCcccchhhHHHHHHHHHHHHHHHhhhcccccCCCCccEEEEEecCcc
Confidence 99999999975 34 3454 899999999999999999999876 35688999999999999
Q ss_pred c-------CcccCHHHHHcc
Q 013216 167 I-------GGHDGAEKFADS 179 (447)
Q Consensus 167 ~-------g~~~G~~~~~~~ 179 (447)
. +++.|++.++++
T Consensus 171 ~~~~~~~~~gl~Gs~~~~~~ 190 (329)
T 2afw_A 171 AFLHWSPQDSLYGSRHLAAK 190 (329)
T ss_dssp CSSSCCSSSSCHHHHHHHHH
T ss_pred cccccCCCccchhHHHHHHH
Confidence 7 135799998875
|
| >4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=129.76 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=117.6
Q ss_pred CCChhHHHHHHHhhhcccCC-CCCCChhHHHHHHHHHHHHCCCceEEEeec----CC----CCeEEEEecCCCCCCCeEE
Q 013216 24 AKSDDSIIERFRAYLQIDTS-QPNPDYTNASKFILAQAEALSLESQTLEFA----KN----KPLILLKWPGSNPQLPSIL 94 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~-s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~----~~----~~nl~~~~~g~~~~~~~il 94 (447)
+-+.++..+.+++|+++... ..+....++++||.+.|+++|++++..... .+ ..||+++++|.. .+.|+
T Consensus 21 ~f~~~~a~~~l~~l~~fgpR~~gS~~~~~a~~~i~~~l~~~g~~v~~q~~~~~~~~~~~~~~~Nii~~~~g~~--~~~i~ 98 (309)
T 4fuu_A 21 QFDADSAYLYVKNQVDFGPRVPNTKEHVACGNYLAGKLEAFGAKVTNQYADLIAYDGTLLKARNIIGSYKPES--KKRIA 98 (309)
T ss_dssp CCCHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTC--SSEEE
T ss_pred ccCHHHHHHHHHHHhCcCCcCCCCHHHHHHHHHHHHHHHHcCCeeEEEeEEeccCCCCcceeEEEEEEECCCC--CceEE
Confidence 34788999999999998653 334567789999999999999998765432 11 249999999864 47899
Q ss_pred EeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCc-----
Q 013216 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----- 169 (447)
Q Consensus 95 l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----- 169 (447)
|.+|+|++|..+... ... .+.....|+.|+..|+|++|++++.|.+. +++++|.|+|..+||.|.
T Consensus 99 l~aH~Ds~~~~~~~~-------~~~-~~~~~~~GA~D~aSG~a~lLE~ar~l~~~--~~~~~i~~~~~~~EE~Gl~~~~~ 168 (309)
T 4fuu_A 99 LFAHWDTRPWADNDA-------DEK-NHHTPILGANDGASGVGALLEIARLVNQQ--QPELGIDIIFLDAEDYGTPQFYE 168 (309)
T ss_dssp EEEECCCCSCCTTCS-------SGG-GTTSCCCCTTTTHHHHHHHHHHHHHHHHS--CCSSEEEEEEECSSSCCCCTTCC
T ss_pred EEeecCCCCCCCCcc-------ccc-cccCCcCCcccCchhHHHHHHHHHHHhhc--CCCCceEEEeecccccCcccccc
Confidence 999999999864211 011 23334469999999999999999999886 478999999999999873
Q ss_pred --------ccCHHHHHccccc--cCCceEEEEe
Q 013216 170 --------HDGAEKFADSHVF--NSLNVGIVLD 192 (447)
Q Consensus 170 --------~~G~~~~~~~~~~--~~~~~~~~~d 192 (447)
+.|+++++++... ..+.+.+++|
T Consensus 169 ~~~~~~~~l~GS~~~~~~~~~~~~~i~~~inlD 201 (309)
T 4fuu_A 169 GKHKEEAWCLGSQYWSRNPHVQGYNARFGILLD 201 (309)
T ss_dssp SCCCGGGSCHHHHHHHHSCSSTTCCCSEEEEEC
T ss_pred chhhhhhhhcchhHHHhcccccCcceEEEEeee
Confidence 2588888775432 2344556665
|
| >3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.2e-14 Score=133.49 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=105.1
Q ss_pred CChhHHHH-HHHhhhcccCCCCCCChhHHHHHHHHHHHHC--CCceEEEeecC-------CCCeEEEEecCCCCCCCeEE
Q 013216 25 KSDDSIIE-RFRAYLQIDTSQPNPDYTNASKFILAQAEAL--SLESQTLEFAK-------NKPLILLKWPGSNPQLPSIL 94 (447)
Q Consensus 25 ~~~~~~~~-~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~--G~~~~~~~~~~-------~~~nl~~~~~g~~~~~~~il 94 (447)
.+.++.++ .|+.+ -++-...+..+.++++||.++|+++ |++++...... ...||+++++|.. .+.|+
T Consensus 36 ~~~~~~~~~~L~~~-~~~R~~gS~~~~~a~~~l~~~l~~~~~g~~v~~d~f~~~~~~g~~~~~Nvia~~~g~~--~~~iv 112 (330)
T 3pb6_X 36 LDPQRLWSTYLRPL-LVVRTPGSPGNLQVRKFLEATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLDPRA--ARHLT 112 (330)
T ss_dssp CCHHHHHHHTTGGG-CSCCCTTSHHHHHHHHHHHHHHHHSTTCCEEEEEEEEEEETTEEEEEEEEEEESCTTS--SEEEE
T ss_pred CCHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEeeecccccCCccceEEEEEECCCC--CceEE
Confidence 35666666 56666 3444444567789999999999999 88887654321 1259999998864 47899
Q ss_pred EeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHc-----CCCCceeEEEEeecCccc--
Q 013216 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS-----GFQPVRSVYLSFVPDEEI-- 167 (447)
Q Consensus 95 l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~-----~~~~~~~i~~~~~~~EE~-- 167 (447)
+.+|+|+|+.. +|.-...|+.|+++|+|++|++++.|.+. +.+++++|.|+|..+||.
T Consensus 113 l~aH~Dsv~~~---------------~g~~~~~GA~D~asGva~lLe~ar~l~~~~~~~~~~~~~~~i~fv~~~~EE~f~ 177 (330)
T 3pb6_X 113 LACHYDSKLFP---------------PGSTPFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALK 177 (330)
T ss_dssp EEEECCCCCCC---------------TTSCCCCCTTTTHHHHHHHHHHHHHTHHHHHHHHHTTCSEEEEEEEESCCSCSS
T ss_pred EEeccCCCCCC---------------CCCcCcCCCcCChHHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEcCccccc
Confidence 99999999853 12124679999999999999999999873 346899999999999998
Q ss_pred ------CcccCHHHHHcc
Q 013216 168 ------GGHDGAEKFADS 179 (447)
Q Consensus 168 ------g~~~G~~~~~~~ 179 (447)
| +.|+++++++
T Consensus 178 ~w~~~~g-l~GS~~~a~~ 194 (330)
T 3pb6_X 178 EWGPKDS-LYGSRHLAQL 194 (330)
T ss_dssp CCSTTSS-CHHHHHHHHH
T ss_pred ccCCCCC-CccHHHHHHH
Confidence 5 5799998874
|
| >4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-13 Score=128.56 Aligned_cols=135 Identities=14% Similarity=0.119 Sum_probs=104.1
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecC--------CCCeEEEEecCCCCCCCeEEEeecc
Q 013216 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK--------NKPLILLKWPGSNPQLPSILLNSHT 99 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~--------~~~nl~~~~~g~~~~~~~ill~~H~ 99 (447)
..+-+.|..++ +|-+..+.+..++++||.++|+++|++++...... ...||+|+++|.. .+.|+|.||+
T Consensus 11 ~~~~~~l~~il-~PR~~gs~~~~~~~~~i~~~l~~~g~~v~~~~f~~~~~~~~~~~~~Nii~~~~~~~--~~~vvl~aHy 87 (312)
T 4f9u_A 11 VHFNRTLDSIL-VPRVVGSRGHQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGTINPQA--QNFLALACHY 87 (312)
T ss_dssp HHHHHHHHHHC-SCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEEESTTS--SEEEEEEEEC
T ss_pred HHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEeEEEecCCCCceeEEEEEEEECCCC--CceEEEEEEE
Confidence 33444566654 67765566778999999999999999987654321 1249999998863 3789999999
Q ss_pred ccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHc-----CCCCceeEEEEeecCcccC------
Q 013216 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS-----GFQPVRSVYLSFVPDEEIG------ 168 (447)
Q Consensus 100 Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~-----~~~~~~~i~~~~~~~EE~g------ 168 (447)
|+++..+. .+ ..|+.|+.+|+|++|++++.|.+. +.+++++|.|+|..+||.|
T Consensus 88 Ds~~~~~~-------------~~---~~GA~DnaSGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~fdaEE~G~~~~~~ 151 (312)
T 4f9u_A 88 DSKYFPND-------------PG---FVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAFKEWTDA 151 (312)
T ss_dssp CCCCCTTC-------------TT---CCCTTTTHHHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEEESCCSCSSSCSSS
T ss_pred ecCCCCCC-------------CC---CCCccCCcccHHHHHHHHHHHHHHHHhhccCCCCceEEEEEecCccccccCCcc
Confidence 99876420 22 359999999999999999999763 4468899999999999977
Q ss_pred -cccCHHHHHcccc
Q 013216 169 -GHDGAEKFADSHV 181 (447)
Q Consensus 169 -~~~G~~~~~~~~~ 181 (447)
++.|+++++++..
T Consensus 152 ~~L~GS~~~a~~~~ 165 (312)
T 4f9u_A 152 DSVYGSKHLAAKLA 165 (312)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred ccccChHHHHHHHH
Confidence 2579999988643
|
| >1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-13 Score=104.49 Aligned_cols=82 Identities=49% Similarity=0.941 Sum_probs=72.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013216 353 NPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 432 (447)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~ 432 (447)
+|+++.+++++++++ ..+.+..++|+||+++|...|+|++.|||+......+|++||+++++++.+++++|..++..++
T Consensus 1 ~~~v~~l~~a~~~~g-~~~~~~~~~g~TDar~~~~~gip~v~fGPg~~~~~~~H~~dE~v~i~~l~~~~~iy~~~i~~~~ 79 (88)
T 1q7l_B 1 NPWWAAFSRVCKDMN-LTLEPEIMPAAGDNRYIRAVGVPALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLLPALA 79 (88)
T ss_dssp CHHHHHHHHHHHHTT-CCEEEEECCSCSHHHHHHHTTCCEEEECCCCSCCCCTTSTTCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcC-CeeEeeeeceeCcHHHHHHcCCCEEEECCCCCCcccccCCCCeeEHHHHHHHHHHHHHHHHHHH
Confidence 478999999999984 3347778889999999999999999999997533479999999999999999999999999998
Q ss_pred hhc
Q 013216 433 SYV 435 (447)
Q Consensus 433 ~~~ 435 (447)
+..
T Consensus 80 ~~~ 82 (88)
T 1q7l_B 80 SVP 82 (88)
T ss_dssp TCC
T ss_pred cCC
Confidence 763
|
| >4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-13 Score=128.76 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=111.9
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecC--------CCCeEEEEecCCCCCCCeEEEee
Q 013216 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK--------NKPLILLKWPGSNPQLPSILLNS 97 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~--------~~~nl~~~~~g~~~~~~~ill~~ 97 (447)
+...+-+.|..++ +|-...+....++++||.+.|+++|++++...... ...||+++++|.. ...|+|.|
T Consensus 36 ~~~~~~~~l~~il-~pR~~Gs~~~~~~~~~i~~~l~~~g~~v~~q~f~~~~~~~~~~~~~Nii~~~~~~~--~~~i~l~a 112 (330)
T 4fai_A 36 DKLHLREAIDKIL-IPRVVGTTNHSIVREYIVQSLRDLDWDVEVNSFHDHAPIKGKLHFHNIIATLNPNA--ERYLVLSC 112 (330)
T ss_dssp CHHHHHHHHHHHC-SCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEESCTTC--SEEEEEEE
T ss_pred HHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEeeeeeecCCCCceeEEEEEEEECCCC--CcEEEEEE
Confidence 4444555666664 67765566778999999999999999988654421 1249999998753 36899999
Q ss_pred ccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHc---CCCCceeEEEEeecCcccCc-----
Q 013216 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS---GFQPVRSVYLSFVPDEEIGG----- 169 (447)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~---~~~~~~~i~~~~~~~EE~g~----- 169 (447)
|+|+++..+ .+ ..|+.|+..|+|++|++++.|.+. +.+++++|.|+|..+||.|-
T Consensus 113 HyDs~~~~~--------------~~---~~GA~DnasG~A~lLE~Ar~l~~~~~~~~~p~rtI~fv~fdgEE~Gl~~~~~ 175 (330)
T 4fai_A 113 HYDSKYMPG--------------VE---FLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPK 175 (330)
T ss_dssp ECCCCCCTT--------------SC---CCCTTTTHHHHHHHHHHHHHTHHHHGGGGTSSEEEEEEEESCCSCSSSCBTT
T ss_pred eeccccccc--------------CC---CCCCCCccHhHHHHHHHHHHHHHhhhccCCCCccEEEEEecccccccccccc
Confidence 999998642 22 349999999999999999999763 45789999999999999872
Q ss_pred --ccCHHHHHccc----cccCCceEEEEec
Q 013216 170 --HDGAEKFADSH----VFNSLNVGIVLDE 193 (447)
Q Consensus 170 --~~G~~~~~~~~----~~~~~~~~~~~d~ 193 (447)
+.|+++++++. ...++.+.+++|.
T Consensus 176 ~~llGS~~~a~~~~~~~~~~~i~~~inlDm 205 (330)
T 4fai_A 176 DSIYGARHLAKKWHHEGKLDRIDMLVLLDL 205 (330)
T ss_dssp BSCHHHHHHHHHHHHTTCSTTEEEEEEECS
T ss_pred chhhhhHHHHhcchhccchhceeEEEEecc
Confidence 35999998752 2344556677764
|
| >3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.4e-12 Score=120.03 Aligned_cols=132 Identities=19% Similarity=0.197 Sum_probs=96.2
Q ss_pred HHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCC----
Q 013216 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS---- 104 (447)
Q Consensus 29 ~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~---- 104 (447)
-+.++|++|+++|+.| +.|.++++++.++|+++|.+++. + ...|+++.+ |. +.|+|+|.||||+|..
T Consensus 12 ~~~~~l~~L~~~pspS--G~E~~v~~~i~~~l~~~~~e~~~-D---~~Gnvi~~~-g~--~~~~v~l~aHmDevG~mV~~ 82 (343)
T 3isx_A 12 HMKELIRKLTEAFGPS--GREEEVRSIILEELEGHIDGHRI-D---GLGNLIVWK-GS--GEKKVILDAHIDEIGVVVTN 82 (343)
T ss_dssp CCHHHHHHHHHSCCBT--TCCHHHHHHHHHHHTTTCSEEEE-C---TTCCEEEEE-CC--CSSEEEEEEECCBCEEEEEE
T ss_pred HHHHHHHHHHhCCCCC--CchHHHHHHHHHHHHHhCCEEEE-C---CCCCEEEEE-CC--CCCEEEEEecccccceEEEE
Confidence 3567899999999975 89999999999999999987764 3 344999998 43 4589999999999932
Q ss_pred ----C-----C-CCCC-----cCC------Cceee------------------------C--------------------
Q 013216 105 ----E-----P-SKWS-----HHP------FGAHL------------------------D-------------------- 119 (447)
Q Consensus 105 ----~-----~-~~W~-----~~P------f~~~~------------------------~-------------------- 119 (447)
+ + .+|. ... +.+.+ +
T Consensus 83 I~~~G~l~~~~vGG~~~~~~~~~~v~i~t~~~Gvig~~~~H~~~~~~~~~~~~~~~l~iD~g~~s~ee~~~~I~vGd~v~ 162 (343)
T 3isx_A 83 VDDKGFLTIEPVGGVSPYMLLGKRIRFENGTIGVVGMEGETTEERQENVRKLSFDKLFIDIGANSREEAQKMCPIGSFGV 162 (343)
T ss_dssp ECTTSCEEEEEESSCCHHHHTTCEEEETTSCEEEEEECCCSHHHHHHHHHTCCGGGEEEECSCSSHHHHHHHSCTTCEEE
T ss_pred ECCCCeEEEEecCCcCccccCCcEEEEeccEEEEEecccccccChhhcccCCCcceEEEEeCCCCHHHHHhcCCCCCEEE
Confidence 0 0 2231 000 11111 0
Q ss_pred -------CCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHH
Q 013216 120 -------SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (447)
Q Consensus 120 -------~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (447)
-++++.||+ .|++.++++++.+++.+.. +.+++++|+..||.|+ .|+...
T Consensus 163 ~~~~~~~~~~~i~s~~-lDdR~g~~~~l~~l~~l~~-----~~~~~~~ft~qEEVG~-~Ga~~a 219 (343)
T 3isx_A 163 YDSGFVEVSGKYVSKA-MDDRIGCAVIVEVFKRIKP-----AVTLYGVFSVQEEVGL-VGASVA 219 (343)
T ss_dssp ESCCCEEETTEEEESC-HHHHHHHHHHHHHHHHCCC-----SSEEEEEEECCCCTTS-CCSTTT
T ss_pred ecCceEEeccEEEecc-CccHHHHHHHHHHHHhccC-----CCeEEEEEECCcccCc-hhHHHH
Confidence 125566665 8999999999999877531 5799999999999996 577543
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.5e-10 Score=109.92 Aligned_cols=94 Identities=20% Similarity=0.121 Sum_probs=76.4
Q ss_pred CCeEEEEecCCCC---CCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCC
Q 013216 76 KPLILLKWPGSNP---QLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQ 152 (447)
Q Consensus 76 ~~nl~~~~~g~~~---~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~ 152 (447)
..||+++++|+.+ ..+.|++.+|+|+|+.+ +|+.|+++|++++|++++.|.+. +
T Consensus 203 ~~Nvi~~~~g~~~~~~~~~~v~~~aH~D~v~~g---------------------~Ga~D~~~G~a~~le~~~~l~~~--~ 259 (421)
T 2ek8_A 203 SHNVIATKKPDANKKNTNDIIIIGSHHDSVEKA---------------------PGANDDASGVAVTLELARVMSKL--K 259 (421)
T ss_dssp EEEEEEEECCCSSTTCCCCEEEEEEECCCCTTC---------------------CCTTTTHHHHHHHHHHHHHHTTS--C
T ss_pred ccceEEEecCcccCCCCCCEEEEecccccCCCC---------------------CCCCCCcHhHHHHHHHHHHHhcc--C
Confidence 4699999998643 45789999999999843 59999999999999999999874 4
Q ss_pred CceeEEEEeecCcccCcccCHHHHHcccc---ccCCceEEEEec
Q 013216 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHV---FNSLNVGIVLDE 193 (447)
Q Consensus 153 ~~~~i~~~~~~~EE~g~~~G~~~~~~~~~---~~~~~~~~~~d~ 193 (447)
++++|+|+++.+||.|. .|++.++++.. ..++.+.+++|.
T Consensus 260 ~~~~i~~~~~~~EE~g~-~Gs~~~~~~~~~~~~~~~~~~in~D~ 302 (421)
T 2ek8_A 260 TDTELRFITFGAEENGL-IGSKKYAASLSEDEIKRTIGMFQLDM 302 (421)
T ss_dssp CSSEEEEEEESSSTTTS-HHHHHHHTTCCHHHHHHEEEEEEECS
T ss_pred CCceEEEEEECCccccc-hhHHHHHHhCccchhhcEEEEEEecc
Confidence 67999999999999985 79999988632 223455677774
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-10 Score=113.68 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHHHCC-CceEEE-ee----cCCCCeEEEEecCCCCCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCc
Q 013216 50 TNASKFILAQAEALS-LESQTL-EF----AKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGN 123 (447)
Q Consensus 50 ~~~~~~i~~~l~~~G-~~~~~~-~~----~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~ 123 (447)
.+.++.|.+.|+.-. +.++.. +. .....||+++++|..+..+.|+|.+|+|+++.+
T Consensus 203 ~~da~~L~~~l~~g~~~~v~l~~~~~~~~~~~~~Nvi~~~~g~~~~~~~i~~~aH~Ds~~~g------------------ 264 (444)
T 3iib_A 203 NPDADLINAMLKRDKEVVISLELGSERRGETTSYNVIAEVKGSTKADEIVLIGAHLDSWDEG------------------ 264 (444)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEEEEEEEEEEEEEEEEEEECCSTEEEEEEEEEEECCCCSSS------------------
T ss_pred HHHHHHHHHHHhCCCCeEEEEEEeeeEcCCceeEEEEEEEeCCCCCCCEEEEEeecccCCCC------------------
Confidence 355667767665421 222210 00 113469999999876334789999999999843
Q ss_pred EEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccc
Q 013216 124 IFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (447)
Q Consensus 124 l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (447)
+|+.|+++|++++|++++.|.+.+.+++++|+|+++.+||.|. .|+++++++.
T Consensus 265 ---~Ga~D~~sG~a~~le~a~~l~~~~~~~~~~i~f~~~~~EE~gl-~Gs~~~~~~~ 317 (444)
T 3iib_A 265 ---TGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEELGL-LGGKTYAKEH 317 (444)
T ss_dssp ---CCTTTTHHHHHHHHHHHHHHHTSSSCCSEEEEEEEESCGGGTS-HHHHHHHHHT
T ss_pred ---CCCccchHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCcccCC-cCHHHHHHhh
Confidence 4899999999999999999999888899999999999999985 7999998864
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-08 Score=104.44 Aligned_cols=94 Identities=21% Similarity=0.186 Sum_probs=75.9
Q ss_pred CCeEEEEecCCCCCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHH---cCCC
Q 013216 76 KPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA---SGFQ 152 (447)
Q Consensus 76 ~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~---~~~~ 152 (447)
..||+++++|..+..+.|++.+|+|+++. |+.|+..|++++|++++.|.+ .+++
T Consensus 312 ~~NVi~~i~G~~~~~~~vllgaH~Ds~~~-----------------------Ga~D~~sG~a~lLe~ar~l~~~~~~g~~ 368 (707)
T 3fed_A 312 IYNVVGTIRGSVEPDRYVILGGHRDSWVF-----------------------GAIDPTSGVAVLQEIARSFGKLMSKGWR 368 (707)
T ss_dssp EEEEEEEECCSSEEEEEEEEEEECCCSSS-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEEEEeCCCCCCceEEEeccccCCCC-----------------------CCccCcHHHHHHHHHHHHHHhhhhccCC
Confidence 35999999987533478999999999863 458999999999999999986 5778
Q ss_pred CceeEEEEeecCcccCcccCHHHHHcccc---ccCCceEEEEec
Q 013216 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHV---FNSLNVGIVLDE 193 (447)
Q Consensus 153 ~~~~i~~~~~~~EE~g~~~G~~~~~~~~~---~~~~~~~~~~d~ 193 (447)
++++|+|++..+||.|. .|+..++++.. ..++.+.+++|.
T Consensus 369 p~r~I~f~~~~~EE~Gl-~GS~~~~~~~~~~~~~~~~a~iNlD~ 411 (707)
T 3fed_A 369 PRRTIIFASWDAEEFGL-LGSTEWAEENVKILQERSIAYINSDS 411 (707)
T ss_dssp CSEEEEEEEESCGGGTS-HHHHHHHHHHHHHHHHHEEEEEECSC
T ss_pred CCCCEEEEEeCCccccc-hhHHHHHHhcchhhhhCEEEEEEecc
Confidence 99999999999999984 79999988642 233445667764
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=98.64 E-value=4.5e-08 Score=101.73 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=75.2
Q ss_pred CCeEEEEecCCCCCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHc----CC
Q 013216 76 KPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS----GF 151 (447)
Q Consensus 76 ~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~----~~ 151 (447)
..||+++++|.....+.|++.+|+|++.+ |+.|+..|++++|++++.|.+. ++
T Consensus 266 ~~NVi~~i~G~~~~~~~vvvgaH~Ds~~~-----------------------Ga~D~~sG~a~lLe~ar~l~~~~~~~g~ 322 (640)
T 3kas_A 266 ILNIFGVIKGFVEPDHYVVVGAQRDAWGP-----------------------GAAKSGVGTALLLKLAQMFSDMVLKDGF 322 (640)
T ss_dssp EEEEEEEECCSSEEEEEEEEEEECCCSSC-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred EEEEEEEEeCCcCCCCceeeecccCCCCC-----------------------CCCcCcHHHHHHHHHHHHHHHhhhhcCC
Confidence 45999999987322478999999999742 5679999999999999999874 67
Q ss_pred CCceeEEEEeecCcccCcccCHHHHHcccc--c-cCCceEEEEec
Q 013216 152 QPVRSVYLSFVPDEEIGGHDGAEKFADSHV--F-NSLNVGIVLDE 193 (447)
Q Consensus 152 ~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~--~-~~~~~~~~~d~ 193 (447)
+++++|+|++..+||.|. .|+..++++.. + .++...+++|.
T Consensus 323 ~p~r~I~f~~~~~EE~gl-~GS~~~~~~~~~~l~~~~~a~iNlD~ 366 (640)
T 3kas_A 323 QPSRSIIFASWSAGDFGS-VGATEWLEGYLSSLHLKAFTYINLDK 366 (640)
T ss_dssp CCSEEEEEEEESSGGGTS-HHHHHHHHHTTTTGGGTEEEEEECTT
T ss_pred CCCCcEEEEEECCcccCc-hhHHHHHHhhhhhhhhCEEEEEeccc
Confidence 899999999999999984 79999998642 2 33445566653
|
| >3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.014 Score=56.55 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=60.9
Q ss_pred eEEEEe--cCCCCCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCce
Q 013216 78 LILLKW--PGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVR 155 (447)
Q Consensus 78 nl~~~~--~g~~~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~ 155 (447)
.-++++ +|+. .+.|+|.+|+|+ | + +|+|+.+|+|++++.++.|++. +++.
T Consensus 167 l~y~e~~ipG~t--~~~IllsaH~cH-P-----------------~------~ANDNaSG~a~lleLar~l~~~--~~~~ 218 (435)
T 3k9t_A 167 LTYGEYYIRGEL--EEEILLTTYTCH-P-----------------S------MCNDNLSGVALITFIAKALSKL--KTKY 218 (435)
T ss_dssp EEEEEEEECCSS--SCEEEEEEECCC-C-----------------S------CTTTTHHHHHHHHHHHHHHTTS--CCSS
T ss_pred eEEEEEEecCCC--CCEEEEEEEcCC-C-----------------C------CCCccchHHHHHHHHHHHHhcC--CCCc
Confidence 344544 8863 489999999996 1 2 4788899999999999998764 4789
Q ss_pred eEEEEeecCcccCcccCHHHHHccc--cccCCceEEEEec
Q 013216 156 SVYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVLDE 193 (447)
Q Consensus 156 ~i~~~~~~~EE~g~~~G~~~~~~~~--~~~~~~~~~~~d~ 193 (447)
++.|+|.+ | ..|+..++.+. .++++...+++|.
T Consensus 219 t~rFvf~p----g-~iGS~~yl~~~~~~l~~i~a~lnLDm 253 (435)
T 3k9t_A 219 SYRFLFAP----E-TIGSITWLSRNEDKLKNIKMGLVATC 253 (435)
T ss_dssp EEEEEEEC----T-THHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred eEEEEEcC----c-cHHHHHHHHhChHhhhceEEEEEEEE
Confidence 99999998 2 35788777654 2344455677763
|
| >3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea center, M18 peptidase, MH CLAN, tetrahedral aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB: 3var_A 3l6s_A* 4dyo_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.039 Score=55.12 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=65.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCCcee-----cCCCcchHHHH-HcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013216 351 SSNPWWNLLEEAVRKANGKLGKPEI-----FPASTDARYFR-ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 424 (447)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~g~~D~~~~~-~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~ 424 (447)
.+..+...+++++++.+.+. +... .+|+|++.+.. +.|+|++.+|.... ..|++.|-+...|+...++++
T Consensus 404 t~~~~~~~l~~ia~~~~Ip~-Q~~v~r~D~~gGgTig~i~~s~~Gi~tvdIGiP~r---yMHS~~E~~~~~D~~~~v~Ll 479 (496)
T 3vat_A 404 SNAVSEALIREVASSVGVPL-QDLMVRNDSPCGTTIGPILASRLGLRVLDLGSPQL---AMHSIRETACTTGVLQTITLF 479 (496)
T ss_dssp CCHHHHHHHHHHHHHHTCCC-EEECCCTTSCCCCCHHHHHHHHHTCEEEEEECEEE---STTSSSEEEESHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCE-EEEEecCCCCCcchHHHHHhcccCCcEEEecHhhh---ccccHHHHhhHHHHHHHHHHH
Confidence 36788889999999988765 3222 24777777665 56999999987766 499999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 013216 425 ESIIKAYASYVQ 436 (447)
Q Consensus 425 ~~~l~~l~~~~~ 436 (447)
..++..+.+..+
T Consensus 480 ~af~~~~~~~~~ 491 (496)
T 3vat_A 480 KGFFELFPSLSR 491 (496)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHhh
Confidence 999988876653
|
| >4eme_A M18 aspartyl aminopeptidase; dnpep/M18/aminopeptidase, protease, hydrolase; 2.60A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.053 Score=54.82 Aligned_cols=81 Identities=14% Similarity=0.038 Sum_probs=64.7
Q ss_pred CCChHHHHHHHHHHHh------cCCCCCcee-----cCCCcchHHHH-HcCCCeEEEccCCCCCCCCCCCCccccHHHHH
Q 013216 351 SSNPWWNLLEEAVRKA------NGKLGKPEI-----FPASTDARYFR-ERGLPAIGFSPMANTPILLHDHNEFLNQAEYL 418 (447)
Q Consensus 351 ~~~~~~~~~~~a~~~~------~~~~~~~~~-----~~g~~D~~~~~-~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~ 418 (447)
.+..++..+++++++. +.+. +... .+|+|++.+.. +.|+|++.+|.... ..|++.|-+...++.
T Consensus 472 tn~~~~~~l~~iA~~~~~~~~~gIP~-Q~~v~rnD~~gGgTig~i~~s~~GIpTvdIGiP~r---yMHS~~E~~~~~Dv~ 547 (571)
T 4eme_A 472 TSPLHASLIKRTFELYYNKYKQQIKY-QNFMVKNDTPCGSTVGSMVAANLSMPGIDIGIPQL---AMHSIREIAAVHDVF 547 (571)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCCCCE-EEECCCSSSCCCCCSHHHHHHHHTCCEEEEECEEE---STTSSSEEEEHHHHH
T ss_pred cCHHHHHHHHHHHHhcccccCCCCCE-EEEEEcCCCCCcchHHHHHHhCCCCcEEEechhhh---ccchHHHHhhHHHHH
Confidence 3678889999999998 6654 2222 24777877665 67999999997766 499999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 013216 419 KGIDIYESIIKAYASYV 435 (447)
Q Consensus 419 ~~~~~~~~~l~~l~~~~ 435 (447)
.++++|..++..+..+.
T Consensus 548 ~~vkLl~aFl~~~~~~~ 564 (571)
T 4eme_A 548 FLIKGVFAFYTYYNQVL 564 (571)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 99999999998887665
|
| >2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.055 Score=53.65 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHhcCCCCCce-e----cCCCcch-HHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013216 351 SSNPWWNLLEEAVRKANGKLGKPE-I----FPASTDA-RYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 424 (447)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~-~----~~g~~D~-~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~ 424 (447)
.+..+...+++++++.+.+. +.. . .+||+|+ .+.++.|+|++-+|.... ..|++.|-+...|+...+++|
T Consensus 368 ~~~~~~~~~~~ia~~~~Ip~-Q~~~~gr~d~~gGstig~i~a~~Gi~tvdiGiP~l---~MHS~~E~~~~~D~~~~~~l~ 443 (450)
T 2glf_A 368 AHAEFVARVRKVLNEQGVIW-QVATLGKVDQGGGGTIAKFFAERGSDVIDMGPALL---GMHSPFEISSKADLFETYVAY 443 (450)
T ss_dssp CCHHHHHHHHHHHHHTTCCE-EECCSSSTTSCCCCCTHHHHHTTTSCEEEEECEEB---STTSSSEEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCE-EEEEeccCCCCCCCcHHHHHhCCCCcEEEechhhc---ccchHHHHhhHHHHHHHHHHH
Confidence 35678889999999987654 221 1 3355554 455666999999997766 499999999999999999999
Q ss_pred HHHHHH
Q 013216 425 ESIIKA 430 (447)
Q Consensus 425 ~~~l~~ 430 (447)
..++..
T Consensus 444 ~af~~~ 449 (450)
T 2glf_A 444 RSLMEK 449 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988865
|
| >1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.034 Score=55.34 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=59.2
Q ss_pred CCChHHHHHHHHHHHhcCCCCCcee------cCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013216 351 SSNPWWNLLEEAVRKANGKLGKPEI------FPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 424 (447)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~------~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~ 424 (447)
.+.++...+++++++.+.+. +... .+|+|++.++++.|+|++.+|+... ..|++.|.+...++...+++|
T Consensus 377 ~~~~~~~~l~~~a~~~~Ip~-Q~~~~~r~d~~~GgT~~~~~a~~Gi~tvdiGiP~~---~mHS~~E~~~~~Di~~~~~ll 452 (458)
T 1y7e_A 377 ADAELVSYIRQLLNKNNIAW-QVATLGKVEEGGGGTVAKFLAGYGIRTIDMGPAVI---SMHSPMEITSKFDLYNAYLAY 452 (458)
T ss_dssp -CHHHHHHHHHHHHHHTCCE-EEEEECC-----CHHHHHHHHHHTCEEEEECCEEB---STTSSSEEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCe-EEEEeeccCCCCcCcHHHHHhCCCCCEEEEchhhc---ccchHHHHhhHHHHHHHHHHH
Confidence 36778899999999988765 3322 3477777788888999999998876 499999999999999999988
Q ss_pred HHHH
Q 013216 425 ESII 428 (447)
Q Consensus 425 ~~~l 428 (447)
..++
T Consensus 453 ~af~ 456 (458)
T 1y7e_A 453 KAFY 456 (458)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7764
|
| >2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.043 Score=54.09 Aligned_cols=75 Identities=4% Similarity=0.096 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHHHhcCCCCCcee----cCCCcchHHHH--HcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013216 351 SSNPWWNLLEEAVRKANGKLGKPEI----FPASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 424 (447)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~----~~g~~D~~~~~--~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~ 424 (447)
.+..+...+++++++.+.+. +... .+|+||++.+. +.|+|++.+|+... ..|++.|.+...++...+++|
T Consensus 343 ~~~~~~~~l~~~a~~~~Ip~-Q~~~~~~d~~gGsd~g~i~~~~~Gi~tvdiGip~~---~mHS~~E~~~~~D~~~~~~ll 418 (428)
T 2ijz_A 343 TNSETAGFFRHLCQDSEVPV-QSFVTRSDMGCGSTIGPITASQVGVRTVDIGLPTF---AMHSIRELAGSHDLAHLVKVL 418 (428)
T ss_dssp CCHHHHTTTTHHHHHTCCCC-CBCCCCSSCCCCCCCSTTTGGGGSCCEEEECCCCC---SCSSSSCCCCSSHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHcCCCe-EEEEEeCCCCccchHHHHHHhCCCCCEEEEchhhc---ccchHHHHhhHHHHHHHHHHH
Confidence 46678889999999988765 3222 45788877553 66999999998877 499999999999999999988
Q ss_pred HHHHH
Q 013216 425 ESIIK 429 (447)
Q Consensus 425 ~~~l~ 429 (447)
..++.
T Consensus 419 ~af~~ 423 (428)
T 2ijz_A 419 GAFYA 423 (428)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 88765
|
| >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A | Back alignment and structure |
|---|
Probab=91.98 E-value=0.61 Score=43.13 Aligned_cols=81 Identities=16% Similarity=0.072 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHhcCCCCCceec-CCCcchHHHHHcCCCeEEEccCCC------------------CCCCCCCCCcc--
Q 013216 353 NPWWNLLEEAVRKANGKLGKPEIF-PASTDARYFRERGLPAIGFSPMAN------------------TPILLHDHNEF-- 411 (447)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~-~g~~D~~~~~~~g~p~~~~gp~~~------------------~~~~~H~~~E~-- 411 (447)
..+.+.+.+..++.+... ..... .+.+|...|.+.|+|++.+..... .....|++...
T Consensus 176 ~~l~~~~~~~~~~~gi~~-~~~~~~~~~sD~~~f~~~Gip~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~yHt~~D~~~ 254 (284)
T 1tkj_A 176 PVIEKTFKNYFAGLNVPT-EIETEGDGRSDHAPFKNVGVPVGGLFTGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSLS 254 (284)
T ss_dssp HHHHHHHHHHHHHHTCCC-EECCSSTTCSTHHHHHHTTCCEEEEECCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCSTT
T ss_pred HHHHHHHHHHHHHcCCCc-ccCCCCCCCCchHHHHHCCCCEEEeecCcccccccchhhccccccccCCCCCCCCCcCChh
Confidence 346667777777776543 21122 366898888889999987765410 12357998877
Q ss_pred -ccHHHHHHHHHHHHHHHHHHHhh
Q 013216 412 -LNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 412 -v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
++.+++.+..++++.++..++..
T Consensus 255 ~id~~~l~~~~~~~~~~~~~la~~ 278 (284)
T 1tkj_A 255 NINDTALDRNSDAAAHAIWTLSSG 278 (284)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999988753
|
| >2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.11 Score=51.61 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=58.3
Q ss_pred CCChHHHHHHHHHHHhcCCCCCce-e-----cCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013216 351 SSNPWWNLLEEAVRKANGKLGKPE-I-----FPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 424 (447)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~-~-----~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~ 424 (447)
.+..+...+++++++.+.+. +.. . .+|+|.+.++++.|+|++-+|+... ..|++.|.+...++...+++|
T Consensus 380 ~~~~~~~~l~~ia~~~~Ip~-Q~~~~gr~d~~~GgTig~~~a~~Gi~tvdiGiP~l---~MHS~~E~~~~~Di~~~~~l~ 455 (461)
T 2glj_A 380 ANPEYIAELRRILSKESVNW-QTAELGKVDQGGGGTIAYILAEYGMQVIDCGVALL---NMHAPWEISSKADIYETKNGY 455 (461)
T ss_dssp CCHHHHHHHHHHHHHTCCCE-EECCSSSSSSSCCCCTHHHHHTTTCBCCBBCCEEE---STTSSSEEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCe-EEEeeeccCCCCcccHHHHHhCCCCCEEEEchhhc---ccchHHHHhhHHHHHHHHHHH
Confidence 36778889999999987664 221 1 2467777777888999999988766 499999999999999999988
Q ss_pred HHHH
Q 013216 425 ESII 428 (447)
Q Consensus 425 ~~~l 428 (447)
..++
T Consensus 456 ~af~ 459 (461)
T 2glj_A 456 SAFL 459 (461)
T ss_dssp HTTS
T ss_pred HHHH
Confidence 7653
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=89.85 E-value=0.31 Score=48.39 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=50.3
Q ss_pred ecCCCcchHHHHHcCCCeEEEccCCCC-CCCCCCC---CccccHHHHHHHHHHHHHHHHHHHhhccCC
Q 013216 375 IFPASTDARYFRERGLPAIGFSPMANT-PILLHDH---NEFLNQAEYLKGIDIYESIIKAYASYVQHS 438 (447)
Q Consensus 375 ~~~g~~D~~~~~~~g~p~~~~gp~~~~-~~~~H~~---~E~v~~~~l~~~~~~~~~~l~~l~~~~~~~ 438 (447)
...++||...|...|+|++.+...... ....|++ -++++.+.+.+..++++.++..++...+..
T Consensus 370 ~~~~~SD~~~f~~~GiP~~~l~~~~~~~~~~yHt~~Dt~d~id~~~l~~~~~~~~~~v~~lA~~~~~~ 437 (444)
T 3iib_A 370 KASGGPDVSMLPALGVPVASLRQDGSDYFDYHHTPNDTLDKINPEALAQNVAVYAQFAWVMANSKVEL 437 (444)
T ss_dssp CCCCCGGGTTSGGGTCCEEEEEECCTTGGGTTTSTTCCGGGSCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCccHHHHHCCCCEEEeecCCCcCCCCCCCCccccccCCHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 345789998888899999877654221 2357888 578999999999999999999998766443
|
| >3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=85.37 E-value=4.4 Score=37.85 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhcCCCCCceecC--CCcchHHHHH-cCCCeEEEccCC-----CCCCCCCCCC---ccccHHHHHHHHH
Q 013216 354 PWWNLLEEAVRKANGKLGKPEIFP--ASTDARYFRE-RGLPAIGFSPMA-----NTPILLHDHN---EFLNQAEYLKGID 422 (447)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~--g~~D~~~~~~-~g~p~~~~gp~~-----~~~~~~H~~~---E~v~~~~l~~~~~ 422 (447)
.+.+.+.+.++.++....-..... ..+|...|.+ .|+|++.+.+.. ......|+++ |.++.+.+.+..+
T Consensus 221 ~l~~~~~~~a~~~g~~~~f~~~~~g~~~sDh~~f~~~~GiP~~~li~~~~~~~~~~~~~~Ht~~Dt~d~id~~~l~~~~~ 300 (309)
T 3tc8_A 221 PIVEMVWSAARDLGYGKYFINAAGGAITDDHQYVISGRNIPSIDIINYDPESKTGFASYWHTQKDNMENIDRETLKAAGQ 300 (309)
T ss_dssp HHHHHHHHHHHHHTCTTTEEEEECCCCCCHHHHHHHHHCCCEEEEEBCCTTSSSSSCTTTTSTTCSGGGBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcceeccCCCCCCCCccHHHHhcCCCCEEEEecccCcccCCCCCCCCCCcCChhhCCHHHHHHHHH
Confidence 355666666666765320111112 3689888888 899999875541 1124689999 9999999999999
Q ss_pred HHHHHHHH
Q 013216 423 IYESIIKA 430 (447)
Q Consensus 423 ~~~~~l~~ 430 (447)
+...+++.
T Consensus 301 ~~~~~vy~ 308 (309)
T 3tc8_A 301 TVLEVIYN 308 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988875
|
| >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... | Back alignment and structure |
|---|
Probab=85.00 E-value=1.7 Score=40.34 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHhcCCCC-Ccee-cCCCcchHHHHHcCCCeEEEccCC--CCCCCCCCCCccccHHH-----HHHHHHH
Q 013216 353 NPWWNLLEEAVRKANGKLG-KPEI-FPASTDARYFRERGLPAIGFSPMA--NTPILLHDHNEFLNQAE-----YLKGIDI 423 (447)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~-~~~~-~~g~~D~~~~~~~g~p~~~~gp~~--~~~~~~H~~~E~v~~~~-----l~~~~~~ 423 (447)
..+.+.+.++.++.....+ .... ..++||...|.+.|+|++.+.... ......|++.+.++..+ +.+..++
T Consensus 199 ~~l~~~l~~~a~~~~~~i~~~~~~~~~~~sD~~~f~~~GiP~~~~~~~~~~~~~~~yHt~~Dt~~~~d~~~~~~~~~~~l 278 (299)
T 1rtq_A 199 SNFTQYLTQLMDEYLPSLTYGFDTCGYACSDHASWHNAGYPAAMPFESKFNDYNPRIHTTQDTLANSDPTGSHAKKFTQL 278 (299)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECCSSCCSTHHHHHHTTCCEECEESSCGGGSCTTTTSTTCCGGGSCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCccCCcccCCCCCCCCcHHHHHHCCCCEEEecccccccCCCCCCCccccccccCccHHHHHHHHHH
Confidence 4466677777777631110 1111 126789988888999997543311 11136899998877655 4788889
Q ss_pred HHHHHHHHHhhccCCc
Q 013216 424 YESIIKAYASYVQHSK 439 (447)
Q Consensus 424 ~~~~l~~l~~~~~~~~ 439 (447)
+..++..|+..+...+
T Consensus 279 ~~~~~~~La~~~~~~~ 294 (299)
T 1rtq_A 279 GLAYAIEMGSATGDTP 294 (299)
T ss_dssp HHHHHHHHHHCCC---
T ss_pred HHHHHHHHhCCCcCCC
Confidence 9999988876654443
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=4.8 Score=39.29 Aligned_cols=75 Identities=21% Similarity=0.161 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCCCceecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCcc---ccHHHHHHHHHHHHHHHHHHHhh
Q 013216 358 LLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEF---LNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~---v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
...+..+.++.. .+....++||...|.+.|+|++.|..... ....|++... ++.+.+....+++..++..++..
T Consensus 326 ~~~~~~~~~~~~--~~~~~~~~SD~~~F~~~GIP~~~~~~~~~-~~~yHt~~Dt~~~i~~~~l~~~~~~~~~~~~~la~~ 402 (421)
T 2ek8_A 326 LGAAASSRLSGV--LPYGQEGRSDHESFHALGIPAALFIHAPV-EPWYHTPNDTLDKISKEKLDNVADIVGSAVYQAARP 402 (421)
T ss_dssp HHHHHHHHHTSC--CCEEECCSSTHHHHHTTTCCEEEEEEESC-CTTTTSTTCCGGGBCHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHhcCCC--CCCCCCCCCccHHHHHCCCCEEEEECCcC-CCCCCCcccchhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 344555666543 33344578898888889999987752221 1257998887 89999999999999999998765
Q ss_pred c
Q 013216 435 V 435 (447)
Q Consensus 435 ~ 435 (447)
+
T Consensus 403 ~ 403 (421)
T 2ek8_A 403 G 403 (421)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A* | Back alignment and structure |
|---|
Probab=82.11 E-value=12 Score=37.25 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=70.5
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHC-CCceEEEeec----CCCCeE--------------EEEecCCCCCC
Q 013216 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL-SLESQTLEFA----KNKPLI--------------LLKWPGSNPQL 90 (447)
Q Consensus 30 ~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~-G~~~~~~~~~----~~~~nl--------------~~~~~g~~~~~ 90 (447)
-+.+.|+|++.|.-- -.-...++++.+.++++ |++++.++.. .|.+.+ +-++.|.++..
T Consensus 182 ~~~~aRdL~n~P~n~--~~P~~~a~~a~~l~~~~~g~~v~v~~~~~l~~~gmg~~laVg~gS~~pPrli~l~y~g~~~~~ 259 (497)
T 3h8g_F 182 GMAFTRDLGNLPPNL--CHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKAD 259 (497)
T ss_dssp HHHHHHHHHHSCTTT--SCHHHHHHHHHHHHHHCTTEEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEECSCTTS
T ss_pred HHHHHHHhhcCCccc--cCHHHHHHHHHHHHhhcCCceEEEEeHHHHHhCCCCcEEEEccCCCCCCEEEEEEECCCCCCC
Confidence 466788999998732 34457888889999999 9999876542 122122 22333332233
Q ss_pred CeEEEeeccccCCCCCCCCCcCCCceeeCCCCc-EE-ecCcccc---hhHHHHHHHHHHHHHHcCCCCceeEEEEeecCc
Q 013216 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGN-IF-ARGSQDM---KCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165 (447)
Q Consensus 91 ~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~-l~-GrG~~D~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~E 165 (447)
++|+|.|-==| +|.+|. |- +.|=.+| ++|.|+.+.+++++.+.+ ++.+|+.+....|
T Consensus 260 ~~i~LVGKGiT----------------FDsGG~slKp~~~M~~Mk~DM~GAAaV~g~~~a~a~l~--l~vnv~~~i~~~E 321 (497)
T 3h8g_F 260 KPFVLVGKGIT----------------FDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQ--LPVNLVCLLACAE 321 (497)
T ss_dssp CCEEEEEEEEE----------------EECCTTSCCCSTTGGGGGGTTHHHHHHHHHHHHHHHHT--CSSEEEEEEEEEE
T ss_pred CcEEEEcCceE----------------eccCCccCCCccchhhccccchHHHHHHHHHHHHHHcC--CCeEEEEEEEeec
Confidence 44444442111 110111 00 0111233 377889999999999986 5689999998888
Q ss_pred ccC
Q 013216 166 EIG 168 (447)
Q Consensus 166 E~g 168 (447)
-.-
T Consensus 322 Nm~ 324 (497)
T 3h8g_F 322 NMP 324 (497)
T ss_dssp ECC
T ss_pred cCC
Confidence 643
|
| >3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=80.21 E-value=12 Score=36.98 Aligned_cols=118 Identities=8% Similarity=-0.016 Sum_probs=68.1
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHC-CCceEEEeec----CCC-------------Ce-EEEEecCCCCCC
Q 013216 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL-SLESQTLEFA----KNK-------------PL-ILLKWPGSNPQL 90 (447)
Q Consensus 30 ~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~-G~~~~~~~~~----~~~-------------~n-l~~~~~g~~~~~ 90 (447)
-+.+.|+|++.|.-- -.-...++++++.++++ |++++.++.. .+. |- +.-++.|.++..
T Consensus 166 ~~~~aRdL~n~P~n~--~~P~~~a~~a~~l~~~~~g~~v~V~~~~~l~~~gmg~~laVg~gS~~pPrli~l~y~g~~~~~ 243 (486)
T 3pei_A 166 GQNYAKDLQNLPANI--CTTDYMLNEARELTSKYATFSLDYLDQDAMAELGMGCALAVGRGSYMSNYTVCMEYKGGNEGD 243 (486)
T ss_dssp HHHHHHHHHHSCTTT--SCHHHHHHHHHHHHHTCTTEEEEEECHHHHHHTTCHHHHHHHTTCSSCCEEEEEEEECSCTTS
T ss_pred HHHHHHHHhcCChhh--cCHHHHHHHHHHHHhhcCCceEEEEeHHHHHhCCCCcEEEeccCCCCCCEEEEEEECCCCCCC
Confidence 467889999999732 34457888888888888 8999876542 121 22 222333332233
Q ss_pred CeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEec--Cccc---chhHHHHHHHHHHHHHHcCCCCceeEEEEeecCc
Q 013216 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFAR--GSQD---MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165 (447)
Q Consensus 91 ~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~Gr--G~~D---~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~E 165 (447)
++|+|.|-==|-.. +|.=.-. |=.+ +++|.|+.+++++++.+.+ ++.+|+.+....|
T Consensus 244 ~~i~LVGKGiTFDs----------------GG~slKp~~~M~~Mk~DM~GAAaVlg~~~a~a~l~--l~vnv~~~i~~~E 305 (486)
T 3pei_A 244 APIVLVGKGLVFDN----------------GGICIKQAAGMDSMKMDMGGVAAVMGTMKAIAMLN--LPVNVVGVMGLAE 305 (486)
T ss_dssp CCEEEEEEEEETEE----------------CC------------EECSHHHHHHHHHHHHHHHHT--CSSEEEEEEEEEE
T ss_pred CcEEEEccceEEec----------------CCcccCCccchhhhhccchHHHHHHHHHHHHHHcC--CCcEEEEEEEeec
Confidence 44554443111111 1110000 1112 2478889999999999986 5689999888888
Q ss_pred cc
Q 013216 166 EI 167 (447)
Q Consensus 166 E~ 167 (447)
-.
T Consensus 306 Nm 307 (486)
T 3pei_A 306 NA 307 (486)
T ss_dssp C-
T ss_pred cC
Confidence 64
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 447 | ||||
| g1q7l.1 | 280 | c.56.5.4 (A:,B:) Aminoacylase-1, catalytic domain | 2e-45 | |
| g1q7l.1 | 280 | c.56.5.4 (A:,B:) Aminoacylase-1, catalytic domain | 3e-25 | |
| d1lfwa1 | 272 | c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV { | 3e-17 | |
| d1vgya1 | 262 | c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimel | 5e-15 | |
| d1cg2a1 | 276 | c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, | 1e-13 | |
| d1fnoa4 | 295 | c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripepti | 4e-13 | |
| d1fnoa4 | 295 | c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripepti | 3e-05 | |
| d1lfwa2 | 196 | d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactoba | 1e-09 | |
| d1rtqa_ | 291 | c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti | 3e-07 | |
| d2grea2 | 233 | c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptid | 2e-04 | |
| d1z2la1 | 293 | c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydro | 5e-04 | |
| d3bi1a3 | 304 | c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypep | 5e-04 |
| >d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Score = 79.3 bits (194), Expect = 3e-17
Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 10/203 (4%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE---FAKNKPLILLKWP 84
D+I++ + ID+S+ + T +A++ + F
Sbjct: 14 DAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFANYAGRV 73
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + H DVVP+ W+ PF +D +G I+ RGS D K + +
Sbjct: 74 NFGAGDKRLGIIGHMDVVPAGEG-WTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGML 132
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDY-- 202
LK +GF+P + + +EE G + + ++ D ++
Sbjct: 133 LLKEAGFKPKKKIDFVLGTNEETNW-VGIDYYLKHEPT--PDIVFSPDAEYPIINGEHYV 189
Query: 203 -RAFYAERCPWWLVIKARGAPGH 224
+ + + K G PGH
Sbjct: 190 PGSDPMVQTLLKVYEKQTGKPGH 212
|
| >d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Succinyl-diaminopimelate desuccinylase, catalytic domain species: Neisseria meningitidis [TaxId: 487]
Score = 72.7 bits (177), Expect = 5e-15
Identities = 46/274 (16%), Positives = 80/274 (29%), Gaps = 18/274 (6%)
Query: 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPG 85
++ +E + + + PD + K + + + ++ + F K + L +
Sbjct: 1 TETQSLELAKELISRPS--VTPDDRDCQKLMAERLHKIGFAAEEMHFGNTKNIWLRRGTK 58
Query: 86 SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
+ P + HTDVVP+ P + P + G ++ RG+ DMK ++ A R
Sbjct: 59 A----PVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACER 114
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVL-DEGLASTTEDYRA 204
A S+ L DEE DG K D + + E A
Sbjct: 115 FVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMI 174
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264
R K E S RF + + E
Sbjct: 175 KNGRRPFLTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAMAQEL-----IELG 229
Query: 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298
+ + + N P + I
Sbjct: 230 PSNATIHQINENVRL------NDIPKLSAVYEGI 257
|
| >d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Carboxypeptidase G2, catalytic domain species: Pseudomonas sp., strain rs-16 [TaxId: 306]
Score = 68.4 bits (166), Expect = 1e-13
Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 10/166 (6%)
Query: 18 IIFSSPAKSDDSIIERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFA--K 74
++F + ++I+ + I+T + A F+ A+ + L + A
Sbjct: 6 VLFQAATDEQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLV 65
Query: 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKC 134
I+ K G ++LL SH D V + + PF + G D K
Sbjct: 66 VGDNIVGKIKGRGG--KNLLLMSHMDTVYLKG-ILAKAPFRVE---GDKAYGPGIADDKG 119
Query: 135 VGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
L ++ LK G + ++ + F DEE G G+
Sbjct: 120 GNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSF-GSRDLIQEE 164
|
| >d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Peptidase T (tripeptidase), catalytic domain species: Salmonella typhimurium [TaxId: 90371]
Score = 67.3 bits (163), Expect = 4e-13
Identities = 40/227 (17%), Positives = 66/227 (29%), Gaps = 44/227 (19%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNAS--------KFILAQAEALSLESQTLEFAKNKPLI 79
D ++ERF Y+ +DT + S + + Q E + L + TL L+
Sbjct: 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSEKGT--LM 59
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEP--------------------------SKWSHHP 113
+P+I SH D P S
Sbjct: 60 ATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPV 119
Query: 114 FGAHLDSQ---GNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170
L + D K + + A+ LK + P + ++F PDEE+G
Sbjct: 120 LHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNPI-PHGDIKVAFTPDEEVGK- 177
Query: 171 DGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIK 217
GA+ F +D G E + ++
Sbjct: 178 -GAKHFDVEAF--GAQWAYTVDGGGVGELEFENNMREKVVEHPHILD 221
|
| >d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Peptidase T (tripeptidase), catalytic domain species: Salmonella typhimurium [TaxId: 90371]
Score = 43.4 bits (101), Expect = 3e-05
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 353 NPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFS-PMANTPILLHDHNEF 411
+P + + + + + TD GLP N H +EF
Sbjct: 216 HPHILDIAQQAMRDCHITPEMKPIRGGTDGAQLSFMGLPCPNLFTGGYN----YHGKHEF 271
Query: 412 LNQAEYLKGIDIYESIIKAYA 432
+ K + + I + A
Sbjct: 272 VTLEGMEKAVQVIVRIAELTA 292
|
| >d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Score = 55.3 bits (132), Expect = 1e-09
Identities = 23/182 (12%), Positives = 58/182 (31%), Gaps = 18/182 (9%)
Query: 156 SVYLSFVPDEEIGGHDGAEKFADSHVFN---SLNVGIVLDEGLASTTEDYRAF------- 205
++ SF D+ G + +KF N + + L + Y +F
Sbjct: 5 TLEFSFKNDDTKGDY-VLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYESFLADKELD 63
Query: 206 -YAERCPWWLVIKARGAPGHGAKLYD-NSAMENLFKSIESVRRFRASQ----FDLVKAGL 259
E I G H + ++ L ++ + F
Sbjct: 64 GSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHE 123
Query: 260 KAEGEVVSVNMAFLKAGTPSPNGFVM-NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318
G+ + + G + + + +A ++R P TD +++ ++++++++
Sbjct: 124 DFYGKKLGIFHHDDLMGDLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFS 183
Query: 319 PA 320
Sbjct: 184 GI 185
|
| >d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase species: Aeromonas proteolytica [TaxId: 671]
Score = 49.5 bits (117), Expect = 3e-07
Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 27/166 (16%)
Query: 32 ERFRAYLQIDTSQPN-----PDYTNASKFILAQAEALSLESQTLEF------AKNKPLIL 80
+ + S N AS +I ++ +ALS N+ ++
Sbjct: 20 SQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVV 79
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
+ GS I++ H D + GA D
Sbjct: 80 MTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGAD-------------DDASGIAAVT 126
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEE---IGGHDGAEKFADSHVFN 183
E IR L + FQP RS+ EE G D A ++
Sbjct: 127 EVIRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSEGKNV 172
|
| >d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Deblocking aminopeptidase YhfE species: Bacillus cereus [TaxId: 1396]
Score = 40.3 bits (94), Expect = 2e-04
Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 46/198 (23%)
Query: 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQ 89
+E + + I + P+ + FI ++E++ NK ++L G N
Sbjct: 6 TMELIKELVSIPS--PSGNTAKIINFIENYVSEWNVETKR----NNKGALILTVKGKND- 58
Query: 90 LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS 149
H AH+D+ D V + L+ I+RL+
Sbjct: 59 -------------------AQHRLLTAHVDTL---------DKVSVAIL-LKLIKRLQDE 89
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN--SLNVGIVLD------EGLASTTED 201
+ + +EEIG G ++++G + D ++ +D
Sbjct: 90 NVTLPYTTHFLISNNEEIGY--GGNSNIPEETVEYLAVDMGALGDGQASDEYTVSICAKD 147
Query: 202 YRAFYAERCPWWLVIKAR 219
Y LV A+
Sbjct: 148 SSGPYHYALRKHLVELAK 165
|
| >d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Allantoate amidohydrolase AllC catalytic domain species: Escherichia coli [TaxId: 562]
Score = 39.3 bits (91), Expect = 5e-04
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 26/120 (21%)
Query: 47 PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106
P++ + + A LE+ + N + + G+ +L SH D V
Sbjct: 33 PEWLETQQQFKKRMAASGLET-RFDEVGN---LYGRLNGTEYPQEVVLSGSHIDTVV--- 85
Query: 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166
G+ D + + AI LK P+R+V + + +EE
Sbjct: 86 -------------------NGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEE 126
|
| >d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: FolH catalytic domain-like domain: Glutamate carboxypeptidase II FOLH1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 5e-04
Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 31/164 (18%)
Query: 27 DDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAKNKPL---- 78
D+ E + +L T P+ +K I +Q + L+S L
Sbjct: 7 DELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLEVTRI 66
Query: 79 --ILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVG 136
++ G+ ++L H D V
Sbjct: 67 YNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQ--------------------SGAAVV 106
Query: 137 MQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
+ + + LK G++P R++ + EE G G+ ++A+ +
Sbjct: 107 HEIVRSFGTLKKEGWRPRRTILFASWDAEEFGLL-GSTEWAEEN 149
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| g1q7l.1 | 280 | Aminoacylase-1, catalytic domain {Human (Homo sapi | 100.0 | |
| d1vgya1 | 262 | Succinyl-diaminopimelate desuccinylase, catalytic | 100.0 | |
| d1cg2a1 | 276 | Carboxypeptidase G2, catalytic domain {Pseudomonas | 99.95 | |
| d1lfwa1 | 272 | Aminopeptidase PepV {Lactobacillus delbrueckii [Ta | 99.94 | |
| d1fnoa4 | 295 | Peptidase T (tripeptidase), catalytic domain {Salm | 99.93 | |
| d1ysja1 | 261 | Protein YxeP {Bacillus subtilis [TaxId: 1423]} | 99.93 | |
| d1xmba1 | 273 | IAA-amino acid hydrolase, catalytic domain {Mouse- | 99.9 | |
| d1vhea2 | 275 | Hypothetical protein YsdC, catalytic domain {Bacil | 99.85 | |
| d1z2la1 | 293 | Allantoate amidohydrolase AllC catalytic domain {E | 99.83 | |
| d1yloa2 | 264 | Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 | 99.82 | |
| d1vhoa2 | 248 | Putative endoglucanase TM1048, catalytic domain {T | 99.8 | |
| d2grea2 | 233 | Deblocking aminopeptidase YhfE {Bacillus cereus [T | 99.8 | |
| d2fvga2 | 255 | Endoglucanase TM1049 {Thermotoga maritima [TaxId: | 99.79 | |
| d1r3na1 | 322 | Peptidase-like beta-alanine synthase, catalytic do | 99.78 | |
| d1tkja1 | 277 | Aminopeptidase {Streptomyces griseus [TaxId: 1911] | 99.68 | |
| d1vgya2 | 113 | Succinyl-diaminopimelate desuccinylase {Neisseria | 99.65 | |
| d1rtqa_ | 291 | Aminopeptidase {Aeromonas proteolytica [TaxId: 671 | 99.63 | |
| d1ysja2 | 115 | Protein YxeP {Bacillus subtilis [TaxId: 1423]} | 99.62 | |
| d1cg2a2 | 113 | Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 | 99.59 | |
| d1xmba2 | 119 | IAA-amino acid hydrolase {Mouse-ear cress (Arabido | 99.57 | |
| d3bi1a3 | 304 | Glutamate carboxypeptidase II FOLH1 {Human (Homo s | 99.42 | |
| d1z2la2 | 117 | Allantoate amidohydrolase AllC {Escherichia coli [ | 99.37 | |
| d2afwa1 | 329 | Glutaminyl-peptide cyclotransferase, QPCT {Human ( | 99.33 | |
| d1lfwa2 | 196 | Aminopeptidase PepV {Lactobacillus delbrueckii [Ta | 99.28 | |
| d1r3na2 | 116 | Peptidase-like beta-alanine synthase {Yeast (Sacch | 99.27 | |
| d1de4c3 | 294 | Transferrin receptor ectodomain, protease-like dom | 99.26 | |
| d1y0ya2 | 255 | Frv operon protein FrvX, catalytic domain {Pyrococ | 98.3 | |
| d1y0ya2 | 255 | Frv operon protein FrvX, catalytic domain {Pyrococ | 97.42 | |
| d1y7ea2 | 322 | Probable aminopeptidase ApeA {Borrelia burgdorferi | 95.06 | |
| d1fnoa3 | 113 | Peptidase T (tripeptidase) {Salmonella typhimurium | 95.0 | |
| d1y7ea2 | 322 | Probable aminopeptidase ApeA {Borrelia burgdorferi | 94.04 |
| >d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Succinyl-diaminopimelate desuccinylase, catalytic domain species: Neisseria meningitidis [TaxId: 487]
Probab=100.00 E-value=6.7e-37 Score=286.22 Aligned_cols=242 Identities=20% Similarity=0.248 Sum_probs=173.2
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~ 106 (447)
+.+.++++++|++|||+| ++|+++++||.++|+++||+++.++.. +.+|+++...+ ++|+|+|+|||||||+++
T Consensus 2 ~~e~lell~~Lv~i~S~s--~~e~~~a~~l~~~l~~~G~~~~~~~~~-~~~nv~~~~~~---~~~~l~l~~H~DtVp~g~ 75 (262)
T d1vgya1 2 ETQSLELAKELISRPSVT--PDDRDCQKLMAERLHKIGFAAEEMHFG-NTKNIWLRRGT---KAPVVCFAGHTDVVPTGP 75 (262)
T ss_dssp CSHHHHHHHHHHTSCCBT--TCCTTHHHHHHHHHHTTTCEEEECCBT-TBCEEEEEECS---SSSEEEEEEECCBCCCCC
T ss_pred cHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHCCCeEEEEEeC-CccEEEEEecC---CCCeEEEEeccccccCCc
Confidence 468899999999999996 578899999999999999999887654 67799998643 348999999999999987
Q ss_pred -CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcccccc--
Q 013216 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN-- 183 (447)
Q Consensus 107 -~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~-- 183 (447)
+.|+.+||+++++ ||++||||++|||++++++|.|++.+.+.+..+++++.|+|++|||.++..|++++.+.....
T Consensus 76 ~~~w~~~p~~~~~~-dg~iyGrGa~D~Kg~~a~~l~a~~~l~~~~~~~~~~~~l~~~~dEE~~~~~G~~~l~~~~~~~~~ 154 (262)
T d1vgya1 76 VEKWDSPPFEPAER-DGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDE 154 (262)
T ss_dssp GGGSSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHHHHHHHTTC
T ss_pred cccccccccccEEE-cCceEeeccccccccHHHHHHHHHHHHHhcccCCCCeEEEEEecCccccccCHHHHHhHhhhcCC
Confidence 7899999999997 999999999999999999999999999998888999999999998877778999998754332
Q ss_pred CCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCC----------CCCC-CHHHHHHHHHHHHHhchhhhH
Q 013216 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK----------LYDN-SAMENLFKSIESVRRFRASQF 252 (447)
Q Consensus 184 ~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~----------p~~g-nai~~~~~~i~~l~~~~~~~~ 252 (447)
..+++++. +|+....+....++..+......|+.+|.+. ++.. +++...++++..+..
T Consensus 155 ~~~~~ivg-----Ept~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~------ 223 (262)
T d1vgya1 155 LIDYCIVG-----EPTAVDKLGDMIKNGRRPFLTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAMAQ------ 223 (262)
T ss_dssp CEEEEEEC-----CCCBSSSTTSEEECEECCEECCSSHHHHHHHHHHHHHHSSCCEEECCSCCCTHHHHGGGEE------
T ss_pred Cccccccc-----CCCCccceeeEEEeeeeeeeccccccchhhhhHHHHhhhHHHHHhcchhhhhHHHHHhhCc------
Confidence 23555554 4553222211122222233333443332211 1110 111111111111110
Q ss_pred HHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEee
Q 013216 253 DLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298 (447)
Q Consensus 253 ~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~ 298 (447)
.....+ .++++++.|++|. +.|+||+.|++.+++
T Consensus 224 -----~~~~lg-~~t~nvg~I~gG~------~~NvVP~~a~i~~~i 257 (262)
T d1vgya1 224 -----ELIELG-PSNATIHQINENV------RLNDIPKLSAVYEGI 257 (262)
T ss_dssp -----EEEECC-SBCTTTTSTTCEE------ETTHHHHHHHHHHHH
T ss_pred -----cccccC-CCceEEEEeecCC------CcccCCCccchHHHH
Confidence 011112 2578888888887 999999999876654
|
| >d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Carboxypeptidase G2, catalytic domain species: Pseudomonas sp., strain rs-16 [TaxId: 306]
Probab=99.95 E-value=2.5e-28 Score=228.71 Aligned_cols=158 Identities=21% Similarity=0.289 Sum_probs=136.4
Q ss_pred CChhHHHHHHHhhhcccCCCCCCCh---hHHHHHHHHHHHHCCCceEEEeecC--CCCeEEEEecCCCCCCCeEEEeecc
Q 013216 25 KSDDSIIERFRAYLQIDTSQPNPDY---TNASKFILAQAEALSLESQTLEFAK--NKPLILLKWPGSNPQLPSILLNSHT 99 (447)
Q Consensus 25 ~~~~~~~~~l~~l~~ips~s~~~~e---~~~~~~i~~~l~~~G~~~~~~~~~~--~~~nl~~~~~g~~~~~~~ill~~H~ 99 (447)
...+++++.|++|++|||.| .++ .++++|+.++|+++||+++.++... .++||+++++|++ .++|+|+||+
T Consensus 13 ~~~~~~i~~L~~lv~i~S~s--~~~~~~~~~a~~l~~~l~~lG~~~~~~~~~~~~~~~nv~a~~~g~~--~~~vll~~H~ 88 (276)
T d1cg2a1 13 DEQPAVIKTLEKLVNIETGT--GDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRG--GKNLLLMSHM 88 (276)
T ss_dssp HHHHHHHHHHHHHHTSCCBT--TCHHHHHHHHHHHHHHHHHTTCEEEEEECSTTCCSEEEEEEEECSS--CCCEEEEEEC
T ss_pred HhHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCEEEEEECCCC--CCeEEEEecc
Confidence 35788999999999999985 554 4678999999999999999877542 3569999998764 4899999999
Q ss_pred ccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcc
Q 013216 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (447)
Q Consensus 100 Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (447)
||||+. ..|..+|| +++ ++++||||++|||++++++|.+++.|++.+.+++++|.|+|+++||.|+ .|+++++++
T Consensus 89 DtV~~~-~~w~~~Pf--~~~-~~~l~G~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~-~g~~~~~~~ 163 (276)
T d1cg2a1 89 DTVYLK-GILAKAPF--RVE-GDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGS-FGSRDLIQE 163 (276)
T ss_dssp CBSCCT-THHHHSCC--EEE-TTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTT-TTTHHHHHH
T ss_pred cccccc-cccCCCcc--eee-cCeeeecccccccccHHHHHHHHHHHHHcCCCCCCCEEEEEEccccccc-ccHHHHHHh
Confidence 999986 57999999 465 9999999999999999999999999999998899999999999999987 699999886
Q ss_pred ccccCCceEEEEe
Q 013216 180 HVFNSLNVGIVLD 192 (447)
Q Consensus 180 ~~~~~~~~~~~~d 192 (447)
.. ...|++++++
T Consensus 164 ~~-~~~d~~i~~E 175 (276)
T d1cg2a1 164 EA-KLADYVLSFE 175 (276)
T ss_dssp HH-HHCSEEEECC
T ss_pred cc-ccCCEEEEec
Confidence 43 3357788774
|
| >d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Probab=99.94 E-value=2.9e-27 Score=220.85 Aligned_cols=158 Identities=22% Similarity=0.353 Sum_probs=130.1
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCCC----------hhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEec-CCCCCCC
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQPNPD----------YTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP-GSNPQLP 91 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s~~~~----------e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~-g~~~~~~ 91 (447)
.+..+++++++|++|++|||+|+..+ ..++.+++.++++++|++++.++ |+++... |. +.|
T Consensus 9 ~~~~~d~~l~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~g~--~~~ 80 (272)
T d1lfwa1 9 AEAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFA------NYAGRVNFGA--GDK 80 (272)
T ss_dssp HHTTHHHHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEET------TTEEEEEECC--CSS
T ss_pred HHHHHHHHHHHHHHHhCCCCcCCCcccccccccchHHHHHHHHHHHHHHHcCCeeeeeC------ceEEEEEcCC--CCC
Confidence 45689999999999999999974321 24667788899999999988543 3444443 33 458
Q ss_pred eEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCccc
Q 013216 92 SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD 171 (447)
Q Consensus 92 ~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~ 171 (447)
+|+|+||+||||++ +.|+++||++.+++||++||||++|||+++++++.|++.|++.+.+++++|.|+|+++||+|+ .
T Consensus 81 ~i~l~~H~DvVp~~-~~W~~dPf~~~i~~dg~l~GrG~~D~k~~~~~~~~a~~~l~~~~~~~~~~i~~~~~~~EE~g~-~ 158 (272)
T d1lfwa1 81 RLGIIGHMDVVPAG-EGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEETNW-V 158 (272)
T ss_dssp EEEEEEECCBCCCC-SCCSSCTTSCEECTTCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCTTTTC-H
T ss_pred EEEEEeccceeecc-CCceeccccccccccceeeecccccccccHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccCC-c
Confidence 99999999999987 579999999986338999999999999999999999999999998999999999999999997 6
Q ss_pred CHHHHHccccccCCceEEEEe
Q 013216 172 GAEKFADSHVFNSLNVGIVLD 192 (447)
Q Consensus 172 G~~~~~~~~~~~~~~~~~~~d 192 (447)
|++++++++.. .++++..|
T Consensus 159 g~~~~~~~~~~--~~~~~~~d 177 (272)
T d1lfwa1 159 GIDYYLKHEPT--PDIVFSPD 177 (272)
T ss_dssp HHHHHHHHSCC--CSEEEESS
T ss_pred cHHHHHHhCCC--CCeEEecc
Confidence 99999986532 45555544
|
| >d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Peptidase T (tripeptidase), catalytic domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=1.5e-25 Score=212.25 Aligned_cols=253 Identities=21% Similarity=0.263 Sum_probs=188.3
Q ss_pred hHHHHHHHhhhcccCCCCC--------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC-CCCCeEEEeec
Q 013216 28 DSIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN-PQLPSILLNSH 98 (447)
Q Consensus 28 ~~~~~~l~~l~~ips~s~~--------~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~-~~~~~ill~~H 98 (447)
+++++.|.+|++|||+|.. ..|.++++||.++|+++||+++.++. ..|+++.+.+.. ...|+++|.+|
T Consensus 2 ~~~l~~l~~lv~i~S~S~~~~~~~p~~~~e~~~a~~l~~~l~~lG~~~~~id~---~g~~~~~~~~~~~~~~~~v~~~~H 78 (295)
T d1fnoa4 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSE---KGTLMATLPANVEGDIPAIGFISH 78 (295)
T ss_dssp CSHHHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEECT---TCCEEEEECCSSCSCCCCEEEEEE
T ss_pred HHHHHHHHHHccccccCCCccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC---CCcEEEEecccCCCCCcceEEEEE
Confidence 5789999999999998631 14789999999999999999877663 348898886643 34589999999
Q ss_pred cccCCCCC--------------------------CCCCcCCCceeeCCCCcEEecCc----ccchhHHHHHHHHHHHHHH
Q 013216 99 TDVVPSEP--------------------------SKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKA 148 (447)
Q Consensus 99 ~Dtvp~~~--------------------------~~W~~~Pf~~~~~~~g~l~GrG~----~D~k~~~a~~l~a~~~l~~ 148 (447)
+||||+.. +.|..+++..... +..++|||. +|+|+++++++.|++.+.+
T Consensus 79 ~Dtv~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~g~~~~~~D~k~G~aa~l~a~~~l~~ 157 (295)
T d1fnoa4 79 VDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLG-QTLITTDGKTLLGADDKAGVAEIMTALAVLKG 157 (295)
T ss_dssp CCBCTTSCCSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTT-SCEEECCSSSCCCHHHHHHHHHHHHHHHHHHS
T ss_pred eCCcCCcCccccCceeecccCCCceeccccccccCccccCCceEEeC-CcEEECCceeeecccchhhHHHHHHHHHHHHh
Confidence 99999753 1366677777786 889999994 7999999999999999998
Q ss_pred cCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCC
Q 013216 149 SGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKL 228 (447)
Q Consensus 149 ~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p 228 (447)
.+. ++++|.+.|+++||++. .|+....+ .+. .++++++|..
T Consensus 158 ~~~-~~~~v~~~~t~~EE~~~-gg~~~~~~--~~~-~~~~i~~D~~---------------------------------- 198 (295)
T d1fnoa4 158 NPI-PHGDIKVAFTPDEEVGK-GAKHFDVE--AFG-AQWAYTVDGG---------------------------------- 198 (295)
T ss_dssp SSC-CCCCEEEEEESCGGGTC-TTTTCCHH--HHC-CSEEEECCCC----------------------------------
T ss_pred cCC-CCCceecccccceecCc-chhhccHh--HcC-CcEEEEecCC----------------------------------
Confidence 875 56899999999999874 34332221 121 2444443310
Q ss_pred CCCCHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHH
Q 013216 229 YDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAES 308 (447)
Q Consensus 229 ~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~ 308 (447)
..|. ....
T Consensus 199 ---------------------------------------------~~~~------~~~~--------------------- 206 (295)
T d1fnoa4 199 ---------------------------------------------GVGE------LEFE--------------------- 206 (295)
T ss_dssp ---------------------------------------------STTB------EECC---------------------
T ss_pred ---------------------------------------------Cccc------ccee---------------------
Confidence 0000 0000
Q ss_pred HHHHHHHHhccCCCCceEeeccccccccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHc
Q 013216 309 LERRIVEEWAPASRNMTFELGQFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER 388 (447)
Q Consensus 309 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~ 388 (447)
.. . . .....+.++++.+.+++++.+... .....+|+||+++|...
T Consensus 207 -----------------~~---~-------------~-~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~g~sD~~~~~~~ 251 (295)
T d1fnoa4 207 -----------------NN---M-------------R-EKVVEHPHILDIAQQAMRDCHITP-EMKPIRGGTDGAQLSFM 251 (295)
T ss_dssp -----------------BC---C-------------H-HHHHTSTHHHHHHHHHHHHTTCCC-BCCCBSSCCHHHHHTTT
T ss_pred -----------------ee---c-------------c-ccccCCHHHHHHHHHHHHhcCCCc-eEeecCCCCHHHHHHhc
Confidence 00 0 0 011223467888888888887765 55667799999999999
Q ss_pred CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHh
Q 013216 389 GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 389 g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 433 (447)
|+|++.|||+.. ..|+|+|+++++++.+.++++..+++..++
T Consensus 252 Gip~~~lg~~~~---~~Ht~~E~v~i~dl~~~~~ll~~~i~~~a~ 293 (295)
T d1fnoa4 252 GLPCPNLFTGGY---NYHGKHEFVTLEGMEKAVQVIVRIAELTAK 293 (295)
T ss_dssp TCCCCEECCSEE---STTSTTCEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEccCCc---cCCCCccEEEHHHHHHHHHHHHHHHHHHhh
Confidence 999999999865 599999999999999999999999987765
|
| >d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Protein YxeP species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=1.8e-25 Score=204.20 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=133.3
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~ 106 (447)
.++++++.++|+++|+++ .+|.+++++|.++|+++|++++. .....+++++.++|..+ +|+|+|++|||++|..+
T Consensus 4 ~~~li~~rr~lh~~PEl~--~~E~~T~~~i~~~L~~~G~~v~~--~~~~~tgv~a~~~g~~~-gp~Ialrad~DALp~~e 78 (261)
T d1ysja1 4 HTRLINMRRDLHEHPELS--FQEVETTKKIRRWLEEEQIEILD--VPQLKTGVIAEIKGRED-GPVIAIRADIDALPIQE 78 (261)
T ss_dssp HHHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHHHTTCEECC--CTTCSSCEEEEEECSSC-CCEEEEEEECCCBSCCC
T ss_pred HHHHHHHHHHHHhCcCcC--ChHHHHHHHHHHHHHHCCCeEEE--ecCCceEEEEEECCCCc-CceEEEEecccccchhh
Confidence 578999999999999995 89999999999999999998753 22245689999987654 59999999999999875
Q ss_pred CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCc
Q 013216 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (447)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~ 186 (447)
+ +..||.+.. +|.+++||+. +++++++.++..|.+.+.+++++|+|+|+|+||+++ |++.|++++.++++|
T Consensus 79 ~--~~~~~~s~~--~G~~HaCGHd---~h~a~~lgaA~~l~~~~~~~~G~v~lifqPaEE~~~--Ga~~mi~~G~~d~vd 149 (261)
T d1ysja1 79 Q--TNLPFASKV--DGTMHACGHD---FHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEIAA--GARKVLEAGVLNGVS 149 (261)
T ss_dssp C--CCCTTCCSS--TTCBCTTSHH---HHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTTTC--HHHHHHHTTTTTTEE
T ss_pred h--ccCcccccc--CCceeccCcc---hHHHHHHHHHHHHHHhcccCCCeEEEecccCccccc--chHHHHHcCCccccC
Confidence 3 445777665 6889887754 788999999999998777789999999999999875 999999999999999
Q ss_pred eEEEEecCCcCcCC
Q 013216 187 VGIVLDEGLASTTE 200 (447)
Q Consensus 187 ~~~~~d~g~~~p~~ 200 (447)
.++.++.....|.+
T Consensus 150 ~~~~~H~~p~~p~G 163 (261)
T d1ysja1 150 AIFGMHNKPDLPVG 163 (261)
T ss_dssp EEEEEEEETTSCTT
T ss_pred eeEEEccCCCCCCe
Confidence 88887754333444
|
| >d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: IAA-amino acid hydrolase, catalytic domain species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.90 E-value=3.2e-23 Score=191.75 Aligned_cols=157 Identities=16% Similarity=0.146 Sum_probs=119.9
Q ss_pred cCCCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccc
Q 013216 21 SSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTD 100 (447)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~D 100 (447)
+.++.-.++++++.|+|+++|+++ .+|.+++++|.++|+++|++++... +..++++.+.+ ++ +|+|+|++|||
T Consensus 6 ~~~~e~~~~li~~rr~lh~~PEl~--~~E~~T~~~i~~~L~~~g~~~~~~~---~~tg~~a~~~~-~~-~~~i~~rad~D 78 (273)
T d1xmba1 6 AKSPEVFDWMVKIRRKIHENPELG--YEELETSKLIRSELELIGIKYRYPV---AITGVIGYIGT-GE-PPFVALRADMD 78 (273)
T ss_dssp ----------------HHHSCCCT--TCCHHHHHHHHHHHHHHTCCEEEEE---TTTEEEEEEES-SS-SCEEEEEEECC
T ss_pred hhChHHHHHHHHHHHHHHhCcCcC--CcHHHHHHHHHHHHHHCCCeEEecC---CceEEEEEECC-Cc-ceEEEEecccc
Confidence 344456689999999999999985 8999999999999999999987422 44689999954 33 49999999999
Q ss_pred cCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccc
Q 013216 101 VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (447)
Q Consensus 101 tvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (447)
++|..+. +..||.+.. .|.+|+||+. ++++++|.+++.|.+...+++++|+|+|+|+||+++ |++.|++.+
T Consensus 79 alp~~e~--~~~~~~s~~--~g~~HaCGHd---~h~a~~l~aa~~l~~~~~~~~g~v~~ifqPaEE~~~--Ga~~mi~~G 149 (273)
T d1xmba1 79 ALPIQEG--VEWEHKSKI--AGKMHACGHD---GHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLS--GAKKMREEG 149 (273)
T ss_dssp CBSCCCC--CCSTTCCSS--TTCBCCSSHH---HHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTTTTC--HHHHHHHTT
T ss_pred ccccccc--cCcccccCC--CCcccccccc---hHHHHHHHHHHHHHHhhhcCCCeEEEEEeccccccc--chhHHHHcC
Confidence 9999762 234666554 7999999986 799999999999999877789999999999999875 999999999
Q ss_pred cccCCceEEEEec
Q 013216 181 VFNSLNVGIVLDE 193 (447)
Q Consensus 181 ~~~~~~~~~~~d~ 193 (447)
.++++|.++.++.
T Consensus 150 ~~~~vd~~~~~H~ 162 (273)
T d1xmba1 150 ALKNVEAIFGIHL 162 (273)
T ss_dssp TTTTEEEEEEEEE
T ss_pred CcCCCCeeEEEee
Confidence 9998888887764
|
| >d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Hypothetical protein YsdC, catalytic domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=1.7e-20 Score=175.42 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=112.2
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCC
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~ 106 (447)
.++.+++|++|++|||+| ++|++++++|.++|+++|++++. | ...|++++++|..+ .|+|+|.||||+||..+
T Consensus 2 ~~~~~~~l~~l~~i~s~s--g~E~~v~~~l~~~l~~~g~~~~~-D---~~gN~i~~~~g~~~-~~~i~l~~H~D~v~~~~ 74 (275)
T d1vhea2 2 LDETLTMLKDLTDAKGIP--GNEREVRQVMKSYIEPFADEVTT-D---RLGSLIAKKTGAEN-GPKIMIAGHLDEVPHFE 74 (275)
T ss_dssp CCHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHGGGCSEEEE-C---TTCCEEEEEESSTT-SCEEEEEEECCCCECCC
T ss_pred hHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHHcCCEEEE-e---CCCcEEEEecCCCC-CCceeeecccccccccc
Confidence 367899999999999985 88999999999999999998874 3 33499999998654 58999999999999864
Q ss_pred CCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcc
Q 013216 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (447)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (447)
. ... +++..++.|+.|+|.|++++|.+++.|.+.+ +..++.|+|+.+||.|+ .|++.+...
T Consensus 75 ~--------~~~-~~~~~~~~~~~Dd~~Gva~~l~~~~~l~~~~--~~~~v~~~~~~~EE~G~-~Ga~~~~~~ 135 (275)
T d1vhea2 75 F--------TVM-NNEKFLLAKAWDNRIGCAIAIDVLRNLQNTD--HPNIVYGVGTVQEEVGL-RGAKTAAHT 135 (275)
T ss_dssp C--------EEC-SSTTEEEETTHHHHHHHHHHHHHHHHHHTSC--CSSEEEEEEESCCTTTS-HHHHHHHHH
T ss_pred c--------eee-ecccccccCcccCccCHHHHHHHHHHHhcCC--CCceEEEEEecccccCC-cchhhhhhc
Confidence 1 123 2677777778999999999999999997754 56899999999999986 699887664
|
| >d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Allantoate amidohydrolase AllC catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=3e-19 Score=164.65 Aligned_cols=274 Identities=16% Similarity=0.160 Sum_probs=178.7
Q ss_pred hhHHHHHHHhhhcccCCC--------CCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeec
Q 013216 27 DDSIIERFRAYLQIDTSQ--------PNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s--------~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H 98 (447)
++++.+.|.+|-+|-... .+..+.++.+|+.++|+++|++++. | ...||+++++|+++..|.|++.+|
T Consensus 5 ~~~l~~~l~~l~~~g~~~~gGvtR~~~s~~~~~a~~~l~~~~~~~Gl~v~~-D---~~GNvig~~~G~~~~~~~v~iGSH 80 (293)
T d1z2la1 5 RQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRF-D---EVGNLYGRLNGTEYPQEVVLSGSH 80 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHTTCEEEE-C---TTSCEEEEECCSSEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCeeeccCCHHHHHHHHHHHHHHHHcCCEEEE-e---cCCcEEEEEeccCCCCceeEeeee
Confidence 455666666666665321 2345778899999999999999874 4 334999999998776788999999
Q ss_pred cccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCc----ccCHH
Q 013216 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----HDGAE 174 (447)
Q Consensus 99 ~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----~~G~~ 174 (447)
+||||.+ |..|...++++.|++++.|.+++.+++++|.+++..+||... +.|++
T Consensus 81 lDtV~~g----------------------G~~Dg~~Gv~a~le~~~~l~~~~~~~~~~i~vv~f~~EEg~rFg~~~~GS~ 138 (293)
T d1z2la1 81 IDTVVNG----------------------GNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSK 138 (293)
T ss_dssp CCCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCCSSSCSCHHHH
T ss_pred cccCCCC----------------------CCCCCchhHHHHHHHHHHHHhcCCCCCCCceeeeeecccccccCcccccch
Confidence 9999964 456777899999999999999998999999999999999542 23666
Q ss_pred HHHccccccCCceEEEEecCCcCcCCcceeEeeeeeeEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhHHH
Q 013216 175 KFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDL 254 (447)
Q Consensus 175 ~~~~~~~~~~~~~~~~~d~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~ 254 (447)
.+... +...++ .... -..|-.+ -++|+.+
T Consensus 139 ~~~G~--~~~~~~--------------~~~~----------------------D~~G~~l------~eal~~~------- 167 (293)
T d1z2la1 139 NIFGL--ANPDDV--------------RNIC----------------------DAKGNSF------VDAMKAC------- 167 (293)
T ss_dssp HHTTC--CCGGGT--------------SSCC----------------------CSSSCCH------HHHHHHT-------
T ss_pred hhcCC--Cchhhh--------------hhhh----------------------ccCCccH------HHHHHHh-------
Confidence 55432 110000 0000 0011111 1122211
Q ss_pred HHhccccCCCcceeeeeeeecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhccCCCCceEeecccccc
Q 013216 255 VKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFELGQFKQR 334 (447)
Q Consensus 255 ~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 334 (447)
+ +........ ..+-+..+.++.++ .+- +++.....+.+- .
T Consensus 168 ---G---------~~~~~~~~~-------~~~~~~a~lElHIE----QGp-----------vLe~~~~~IGVV----~-- 207 (293)
T d1z2la1 168 ---G---------FTLPNAPLT-------PRQDIKAFVELHIE----QGC-----------VLESNGQSIGVV----N-- 207 (293)
T ss_dssp ---T---------CCCCSSCCC-------CCCCEEEEEEEEEC----CSS-----------HHHHTTCCEEEE----E--
T ss_pred ---c---------cCccccccc-------ccccchhheeeccc----cCc-----------chhhCCCCeEEe----c--
Confidence 0 000000000 11112333333333 221 111111122221 1
Q ss_pred ccccccCCCCcccccCCCChHHHHHHHHHHHhcCCCCCceecCCCcchHHHHHcCCC-eEEEccCCCCCCCCCCCCcccc
Q 013216 335 ASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLP-AIGFSPMANTPILLHDHNEFLN 413 (447)
Q Consensus 335 ~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~D~~~~~~~g~p-~~~~gp~~~~~~~~H~~~E~v~ 413 (447)
. ....+..++..+.+.+++.+... ....+++++|+.+++.. +| +|.|.|+.++ ..|+|+|+++
T Consensus 208 -------~-----i~~~~~~~~~~~~~~a~~~g~~~-~~m~SGAGHDA~~~a~~-~Pt~MiFvps~~G--iSH~P~E~t~ 271 (293)
T d1z2la1 208 -------A-----IVPMNKELVATLTELCEREKLNY-RVMHSGAGHDAQIFAPR-VPTCMIFIPSING--ISHNPAERTN 271 (293)
T ss_dssp -------E-----EEECCHHHHHHHHHHHHHTTCCE-EEEEESSCCTHHHHTTT-SCEEEEEECCGGG--CCSSTTCCCC
T ss_pred -------c-----cccchhHHHHhhhhHHHHCCCCe-eeecCccHHHHHHHhcc-CCeeEEEeecCCC--cccCccccCC
Confidence 0 11234567888888899988876 55677889999999987 77 5799999765 7999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013216 414 QAEYLKGIDIYESIIKAYAS 433 (447)
Q Consensus 414 ~~~l~~~~~~~~~~l~~l~~ 433 (447)
.+++..+++++..++.+|+.
T Consensus 272 ~eDi~~g~~vL~~~l~~LA~ 291 (293)
T d1z2la1 272 ITDLAEGVKTLALMLYQLAW 291 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999875
|
| >d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase YpdE species: Shigella flexneri [TaxId: 623]
Probab=99.82 E-value=1.1e-18 Score=161.87 Aligned_cols=138 Identities=20% Similarity=0.302 Sum_probs=112.6
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCCCCCC
Q 013216 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWS 110 (447)
Q Consensus 31 ~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W~ 110 (447)
+++|++|+++||+| ++|.++++++.++|+++|++++. + +..|++++++|.. .|+|+|.+|+|+|+...
T Consensus 3 ~~ll~~l~~~~s~s--g~E~~~~~~~~~~l~~~~~~v~~-D---~~gNi~~~~~~~~--~~~v~~~~H~D~~~~~~---- 70 (264)
T d1yloa2 3 LSLLKALSEADAIA--SSEQEVRQILLEEAARLQKEVRF-D---GLGSVLIRLNEST--GPKVMICAHMDEVFDTT---- 70 (264)
T ss_dssp HHHHHHHHHSCCBT--TBCHHHHHHHHHHHHHTTCCEEE-C---TTCCEEEECCCCS--SCEEEEEEECCCCECCC----
T ss_pred HHHHHHHHcCCCCC--cCHHHHHHHHHHHHHhcCCEEEE-c---CCCcEEEEECCCC--CceEEEecCcCcccccc----
Confidence 58999999999985 88999999999999999999874 3 4449999997653 48999999999998763
Q ss_pred cCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHccccccCCceEEE
Q 013216 111 HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIV 190 (447)
Q Consensus 111 ~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~~ 190 (447)
| .... +++++||| .|+|++++++|++++.|.+. +++.++.|+|+.+||.|. .|++.+..... .+..+.
T Consensus 71 ---~-~~~~-~~~i~g~a-~D~~~gva~lle~~r~l~~~--~~~~~v~~~~~~~EE~G~-~Ga~~~~~~~~---~~~~~~ 138 (264)
T d1yloa2 71 ---F-QVLP-HQRVMGKA-FDDRLSCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGL-RGGQTATRAVS---PDVAIV 138 (264)
T ss_dssp ---C-EEET-TTEEEETT-HHHHHHHHHHHHHHHHHTTC--CCSSEEEEEEESCCTTSS-HHHHHHHHHHC---CSEEEE
T ss_pred ---c-eecc-cccccccc-ccccccHHHHHHHHHHHhcC--CCCceEEEEEEeccccCC-CCccccccccc---cccccc
Confidence 1 2454 89999985 89999999999999998764 467899999999999986 79988765421 244555
Q ss_pred Ee
Q 013216 191 LD 192 (447)
Q Consensus 191 ~d 192 (447)
+|
T Consensus 139 ~D 140 (264)
T d1yloa2 139 LD 140 (264)
T ss_dssp EC
T ss_pred cc
Confidence 54
|
| >d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Putative endoglucanase TM1048, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1.6e-18 Score=159.27 Aligned_cols=127 Identities=19% Similarity=0.177 Sum_probs=107.4
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCCCCC
Q 013216 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKW 109 (447)
Q Consensus 30 ~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W 109 (447)
..++|++|+++|++| ++|.++++||.++|++++.+++. + ...|++++++|.+ .+.|+|.||||+|+...
T Consensus 3 ~~~~l~~l~~~~~~s--g~E~~v~~~i~~~l~~~~~~~~~-d---~~gNvia~~~g~~--~~~i~l~aH~D~v~~~~--- 71 (248)
T d1vhoa2 3 TGKLLMELSNLDGPS--GYETNVVSYIKSVIEPFVDEAKT-T---RHGSLIGYKKGKG--IGKLAFFAHVDEIIDQT--- 71 (248)
T ss_dssp HHHHHHHHHHSCCBT--TCCHHHHHHHHHHHGGGCSEEEE-C---TTSCEEEEECCSS--SCEEEEEEECCBCECCC---
T ss_pred HHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHcCCEEEE-e---cCCcEEEEecCCC--CceEEEeccccceeccc---
Confidence 568899999999985 88999999999999999998874 3 4459999998764 48899999999998652
Q ss_pred CcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHc
Q 013216 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD 178 (447)
Q Consensus 110 ~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~ 178 (447)
...+ +|+++||+ .|+|+|++++|.+++.|.+.+ ++.+|.|+|+.+||.|. .|++.+..
T Consensus 72 ------~~~~-~~~~~~~a-~Dd~~G~a~~l~~~~~l~~~~--~~~~v~~~~~~~EE~G~-~Ga~~~~~ 129 (248)
T d1vhoa2 72 ------AFET-NGKVVGKA-LDNRASCGVLVKVLEFLKRYD--HPWDVYVVFSVQEETGC-LGALTGAY 129 (248)
T ss_dssp ------CEEE-TTEEEETT-HHHHHHHHHHHHHHHHHTTCC--CSSEEEEEEECTTSSSH-HHHHHTTC
T ss_pred ------cccc-CCceeccC-CcccHhHHHHHHHHHHHhhcC--CCCceEEEEeecccCCC-Ccceehhh
Confidence 2344 89999985 899999999999999998654 67899999999999985 79887654
|
| >d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Deblocking aminopeptidase YhfE species: Bacillus cereus [TaxId: 1396]
Probab=99.80 E-value=3.8e-19 Score=160.79 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=96.0
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCC
Q 013216 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (447)
Q Consensus 26 ~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~ 105 (447)
+.++++++|++|++|||+| ++|.++++||.++|+++|++++. + ...|++++++|.++ .|+++|.||||+
T Consensus 2 ~~~e~le~lk~L~~ips~S--g~e~~~~~~i~~~l~~~G~~~~~-d---~~gniia~~~G~~~-~~~i~~~aH~Dt---- 70 (233)
T d2grea2 2 HTKETMELIKELVSIPSPS--GNTAKIINFIENYVSEWNVETKR-N---NKGALILTVKGKND-AQHRLLTAHVDT---- 70 (233)
T ss_dssp HHHHHHHHHHHHHTSCCBT--TCCHHHHHHHHHHTTTSSSEEEE-C---SSSCEEEEECCSEE-EEEEEEEEECCB----
T ss_pred cHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHHcCCeEEE-e---cCCCEEEEecCCCc-cccEEEEeccCc----
Confidence 4689999999999999975 88999999999999999998875 2 44599999998764 489999999997
Q ss_pred CCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHH
Q 013216 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (447)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (447)
|+|++++++|.+++.|++++.+++++|+|+|+++||.|. .|+..
T Consensus 71 -------------------------~dk~g~a~~l~~~~~l~~~~~~~~~~i~~~ft~~EE~G~-~Ga~~ 114 (233)
T d2grea2 71 -------------------------LDKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEIGY-GGNSN 114 (233)
T ss_dssp -------------------------CTHHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC-----CCCCC
T ss_pred -------------------------cccCcHHHHHHHHHHHHHCCCCCCceEEEEEEeCcccCc-hhHHh
Confidence 347899999999999999998999999999999999985 57644
|
| >d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Endoglucanase TM1049 species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=1.5e-19 Score=166.84 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=97.4
Q ss_pred HHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccCCCCCCCCCcCC
Q 013216 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHP 113 (447)
Q Consensus 34 l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W~~~P 113 (447)
|++|++|||.| ++|.++++++.++|+++|++++. + ...|++++++|.++ .|+|+|.||||+||+...
T Consensus 3 l~~l~~i~s~s--g~E~~v~~~~~~~l~~~g~~v~~-d---~~gNii~~~~G~~~-~~~i~l~aH~Dtv~~~~~------ 69 (255)
T d2fvga2 3 LKELSMMPGVS--GDEGKVRDFIKSKIEGLVDNLYT-D---VLGNLIALKRGRDS-SKKLLVSAHMDEVFVSDY------ 69 (255)
T ss_dssp HHHHHHSCCBT--TCCHHHHHHHHHHHGGGSSEEEE-C---TTSCEEEEECCSEE-EEEEEEEEECCBCECCCC------
T ss_pred HHHHhcCCCCC--CCHHHHHHHHHHHHHHcCCeEEE-e---CCCCEEEEecCCCC-CCceEEEeccccccccee------
Confidence 78999999985 89999999999999999999875 3 33499999998754 488999999999998741
Q ss_pred CceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHHHcc
Q 013216 114 FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (447)
Q Consensus 114 f~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (447)
.. ++..+++|+.|+|++++++|++++.+ .+++.++.++|+.+||.|+ .|+..+...
T Consensus 70 ---~~--~~~~~~~ga~Dd~~Gva~~l~~~~~~----~~~~~~i~~~~t~~EE~G~-~g~~~~~~~ 125 (255)
T d2fvga2 70 ---IE--KNGRAVGKAFDDRAGCSVLIDVLESG----VSPAYDTYFVFTVQEETGL-RGSAVVVEQ 125 (255)
T ss_dssp ---EE--ETTEEEESCHHHHHHHHHHHHHHHTC----CCCSEEEEEEEECCCC------CHHHHHH
T ss_pred ---cc--ccccccCCcccchHhHHHHHHHHHHh----cccccceEEEEEeecccCC-cchhhhhhh
Confidence 12 45667778899999999999887644 3467899999999999986 688776554
|
| >d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Peptidase-like beta-alanine synthase, catalytic domain species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.78 E-value=4.3e-19 Score=164.29 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=100.4
Q ss_pred cCCCCChhHHHHHHHhhhc-ccCC---------------CCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEec
Q 013216 21 SSPAKSDDSIIERFRAYLQ-IDTS---------------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84 (447)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~-ips~---------------s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~ 84 (447)
+....|.+++.+.+.+..+ +..+ ..+..+.++.+|+.++|+++|++++. | ...|++++++
T Consensus 9 ~~l~in~~RL~~~l~e~~~~~g~~~~~g~~~~~~G~tRla~S~~d~~ar~~l~~~~~~~Gl~v~~-D---~~GNv~g~~~ 84 (322)
T d1r3na1 9 APLSIASGRLNQTILETGSQFGGVARWGQESHEFGMRRLAGTALDGAMRDWFTNECESLGCKVKV-D---KIGNMFAVYP 84 (322)
T ss_dssp CCCCCCTTHHHHHHHHHHHHTTEECCCSSSTTCCEECCCTTSHHHHHHHHHHHHHHHHHTCEEEE-B---TTSCEEEEEC
T ss_pred CCCCcCHHHHHHHHHHHHHhhccccccCCCCCCCCeecccCCHHHHHHHHHHHHHHHHcCCEEEE-e---CCCcEEEEec
Confidence 3445678888777655432 2111 12455788999999999999998885 4 3349999999
Q ss_pred CCCCCCCeEEEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecC
Q 013216 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164 (447)
Q Consensus 85 g~~~~~~~ill~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~ 164 (447)
|.+++ ++|++.+|+||||.+ |..|...|+++.|++++.|.+++++++++|.+++..+
T Consensus 85 G~~~~-~~v~~GSHlDTVp~G----------------------G~~DG~lGV~a~Levl~~l~e~~~~~~~~i~vv~f~~ 141 (322)
T d1r3na1 85 GKNGG-KPTATGSHLDTQPEA----------------------GKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFN 141 (322)
T ss_dssp CSSCS-SCEEEEECCCCCSSB----------------------CSSTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSC
T ss_pred CCCCC-CceEecCccccCCcC----------------------CCcCCccchHHHHHHHHHHhhhccCCCCCcEEEEeec
Confidence 98765 669999999999965 3345566999999999999999999999999999999
Q ss_pred cccCc----ccCHHHHHc
Q 013216 165 EEIGG----HDGAEKFAD 178 (447)
Q Consensus 165 EE~g~----~~G~~~~~~ 178 (447)
||.+. +.|++.+..
T Consensus 142 EEg~rFg~~~lGS~~~~G 159 (322)
T d1r3na1 142 EEGARFARSCTGSSVWSH 159 (322)
T ss_dssp SSCSSBSSTTHHHHHHTT
T ss_pred cccccccccccccccccC
Confidence 99653 246666653
|
| >d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase species: Streptomyces griseus [TaxId: 1911]
Probab=99.68 E-value=8.3e-17 Score=149.44 Aligned_cols=147 Identities=19% Similarity=0.348 Sum_probs=116.0
Q ss_pred CCCChhHHHHHHHhhhcccCCC------CCCChhHHHHHHHHHHHHCCCceEEEeecCC---CCeEEEEecCCCCCCCeE
Q 013216 23 PAKSDDSIIERFRAYLQIDTSQ------PNPDYTNASKFILAQAEALSLESQTLEFAKN---KPLILLKWPGSNPQLPSI 93 (447)
Q Consensus 23 ~~~~~~~~~~~l~~l~~ips~s------~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~---~~nl~~~~~g~~~~~~~i 93 (447)
++.+.+++.+.|.+|..+.+.+ .++.+.++++||.++|+++|++++..+.... .+||+++++|.+++ +.|
T Consensus 2 p~i~~~~~~~~l~~l~~~~~~~~g~R~~gs~~~~~a~~yi~~~l~~~G~~~~~~~~~~~~~~~~Nvi~~~~g~~~~-~~i 80 (277)
T d1tkja1 2 PDIPLANVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSGGATGYNLIANWPGGDPN-KVL 80 (277)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEETTEEEEEEEEECSCSEEE-EEE
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEeeeccCccccCeEEEECCCCCC-CEE
Confidence 3556677888888887765432 2344678899999999999999987654322 25999999987653 779
Q ss_pred EEeeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCH
Q 013216 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (447)
Q Consensus 94 ll~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (447)
+|.+|+|+|+.+ +|++|+++|++++|++++.|.+.+.+++++|.|+|..+||.|. .|+
T Consensus 81 ~~~aH~D~~~~~---------------------~Ga~D~~sgva~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g~-~Gs 138 (277)
T d1tkja1 81 MAGAHLDSVSSG---------------------AGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGL-IGS 138 (277)
T ss_dssp EEEEECCCCTTS---------------------CCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTS-HHH
T ss_pred EEEccccccccc---------------------cccCCCccchHHHHHHHHHHHhhcCCCCcceEEeecccccccc-ccc
Confidence 999999998853 4899999999999999999999988889999999999999985 799
Q ss_pred HHHHcccc---ccCCceEEEEe
Q 013216 174 EKFADSHV---FNSLNVGIVLD 192 (447)
Q Consensus 174 ~~~~~~~~---~~~~~~~~~~d 192 (447)
+.++++.. ..++...+++|
T Consensus 139 ~~~~~~~~~~~~~~i~~~inlD 160 (277)
T d1tkja1 139 KFYVNNLPSADRSKLAGYLNFD 160 (277)
T ss_dssp HHHHHHSCHHHHTTEEEEEEEC
T ss_pred HHHHHHhhccchhheeeeeccc
Confidence 99988632 12333456666
|
| >d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Succinyl-diaminopimelate desuccinylase species: Neisseria meningitidis [TaxId: 487]
Probab=99.65 E-value=4.1e-16 Score=124.58 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=83.1
Q ss_pred eeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCcccccc
Q 013216 210 CPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQ 288 (447)
Q Consensus 210 G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~i 288 (447)
|+++++|+++|+++|+++|+.| |||..+++++..++.+.... ...+...++++++.+++|.. +.|+|
T Consensus 1 Gsl~~~i~i~Gk~gHaa~P~~g~NpI~~~~~~i~~l~~~~~~~-------~~~~~~~~~~~~t~i~~G~~-----~~NvI 68 (113)
T d1vgya2 1 GSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDE-------GNEYFPPTSFQISNINGGTG-----ATNVI 68 (113)
T ss_dssp EEEEEEEEEECBCEETTCGGGCBCHHHHHHHHHHHHHHCCCCC-------CCSSCCCCEEEEEEEEECCS-----CTTEE
T ss_pred CceEEEEEEEEEeecccCcccCCCcHHHHHHHHHHHHhhhccc-------CcccCCCcEEEEEEEEeccc-----ccccC
Confidence 7889999999999999999999 99999999999887653211 11123346899999998841 67999
Q ss_pred CCceEEEEeeecCCCCCHHHHHHHHHHHhccC
Q 013216 289 PSEAEAGFDIRVPPTTDAESLERRIVEEWAPA 320 (447)
Q Consensus 289 P~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~ 320 (447)
|++|++.+|+|+.|.++.+.++++|+++++..
T Consensus 69 P~~a~~~~~iR~~~~~~~~~i~~~i~~i~~~~ 100 (113)
T d1vgya2 69 PGELNVKFNFRFSTESTEAGLKQRVHAILDKH 100 (113)
T ss_dssp CSEEEEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999988743
|
| >d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase species: Aeromonas proteolytica [TaxId: 671]
Probab=99.63 E-value=4.7e-16 Score=145.17 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=121.1
Q ss_pred CCChhHHHHHHHhhhcccCCCC-CCChhHHHHHHHHHHHHCCCceE-----EEeec-CCCCeEEEEecCCCCCCCeEEEe
Q 013216 24 AKSDDSIIERFRAYLQIDTSQP-NPDYTNASKFILAQAEALSLESQ-----TLEFA-KNKPLILLKWPGSNPQLPSILLN 96 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~-~~~e~~~~~~i~~~l~~~G~~~~-----~~~~~-~~~~nl~~~~~g~~~~~~~ill~ 96 (447)
+.+.+++.+.+..|.++.+... +....++++||.++|+++|.++. .+... .+.+||+++++|+.+..+.|++.
T Consensus 16 ~v~~~~i~~~l~~L~sf~~R~~~s~~~~~a~~wi~~~~~~~g~~~~~~~~~~~~~~~~~~~Nvi~~~~G~~~~~~~ivv~ 95 (291)
T d1rtqa_ 16 QVDASQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIG 95 (291)
T ss_dssp GCCHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETTEEEEEEEEEECCSSEEEEEEEEE
T ss_pred hcCHHHHHHHHHHHhCcCCCCCCChhHHHHHHHHHHHHHHhcCccCCceEEEecCCCCCcccEEEEecCCCCCCCEEEEE
Confidence 5688999999999998877532 33457889999999999986542 12211 13469999999986545789999
Q ss_pred eccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCHHHH
Q 013216 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (447)
Q Consensus 97 ~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (447)
||+|+++... .++.-.++|+.|+++|++++|++++.|.+.+.+++++|.|++..+||.|. .|++++
T Consensus 96 aH~Ds~~~~~-------------~~~~~~~~Ga~D~~sGva~~le~ar~l~~~~~~~~~~i~f~~~~~EE~Gl-~GS~~~ 161 (291)
T d1rtqa_ 96 GHLDSTIGSH-------------TNEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVGL-RGSQDL 161 (291)
T ss_dssp EECCCCSSTT-------------CCTTCCCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTS-HHHHHH
T ss_pred eecCCCCCCC-------------cCCCCCCCCCccchhhHHHHHHHHHHHHHhhcCCcCceEEeccccchhhc-cCcHHH
Confidence 9999998653 14555678999999999999999999999988899999999999999984 799999
Q ss_pred Hcccccc--CCceEEEEe
Q 013216 177 ADSHVFN--SLNVGIVLD 192 (447)
Q Consensus 177 ~~~~~~~--~~~~~~~~d 192 (447)
+++.... ++...+++|
T Consensus 162 ~~~~~~~~~~i~~~inlD 179 (291)
T d1rtqa_ 162 ANQYKSEGKNVVSALQLD 179 (291)
T ss_dssp HHHHHHTTCEEEEEEECS
T ss_pred HHhhhhhcchhhhhhhhh
Confidence 9865332 233455555
|
| >d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Protein YxeP species: Bacillus subtilis [TaxId: 1423]
Probab=99.62 E-value=2.8e-16 Score=126.04 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=75.3
Q ss_pred eEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccccC
Q 013216 211 PWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289 (447)
Q Consensus 211 ~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~iP 289 (447)
..+|+|+++|+++|++.|+.| ||+..+++++..|+.+.....+ +...++++++.+++|. +.|+||
T Consensus 2 ~d~f~v~v~Gk~aHaa~P~~g~nai~~a~~~i~~l~~~~~~~~~--------~~~~~~~~~~~i~~G~------~~NvIP 67 (115)
T d1ysja2 2 VDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNIS--------SLQNAVVSITRVQAGT------SWNVIP 67 (115)
T ss_dssp EEEEEEEEECC--------CCCCHHHHHHHHHHHHC-------------------CCEEEEEEEEECS------CSSSCC
T ss_pred ceEEEEEEEEecccccCcccCcCHHHHHHHHHHHhcccchhccc--------ccccccceeeEEecCc------cccccC
Confidence 457999999999999999999 9999999999999776432211 1123589999999887 899999
Q ss_pred CceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEe
Q 013216 290 SEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFE 327 (447)
Q Consensus 290 ~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~ 327 (447)
++|++.+|+|+.+.++.+.+.++|+++++. ..++++++
T Consensus 68 ~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~e 107 (115)
T d1ysja2 68 DQAEMEGTVRTFQKEARQAVPEHMRRVAEGIAAGYGAQAE 107 (115)
T ss_dssp SEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cceEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 999999999999999999999999998873 45677777
|
| >d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Carboxypeptidase G2 species: Pseudomonas sp., strain rs-16 [TaxId: 306]
Probab=99.59 E-value=2.6e-15 Score=120.02 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=85.6
Q ss_pred eeEEEEEEEeecCCcc-CCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccc
Q 013216 210 CPWWLVIKARGAPGHG-AKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNL 287 (447)
Q Consensus 210 G~~~~~i~v~G~~~Hs-~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~ 287 (447)
|..+++|+++|+++|| +.|+.| ||+..+++++..|+.+... ...++++++.+.+|. +.|+
T Consensus 2 G~~~~~v~~~Gk~~Hag~~P~~g~nAi~~a~~~i~~l~~~~~~------------~~~~~~~~~~~~gG~------~~Nv 63 (113)
T d1cg2a2 2 GIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDK------------AKNLRFNWTIAKAGN------VSNI 63 (113)
T ss_dssp EEEEEEEEEECBCEETTSCGGGSBCHHHHHHHHHHHHGGGCBT------------TTTEEEEEEEEEECS------STTE
T ss_pred CeEEEEEEEEeECccccCCccccCcchHHHHHHHHHHHhhhcc------------CCCcEEEEEEeeccc------cCcE
Confidence 7899999999999997 569999 9999999999999875431 123688899999887 9999
Q ss_pred cCCceEEEEeeecCCCCCHHHHHHHHHHHhcc-CCCCceEe
Q 013216 288 QPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFE 327 (447)
Q Consensus 288 iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~-~~~~~~~~ 327 (447)
||++|++.+|+|+.+.++.+++.++|+++++. ..++.+++
T Consensus 64 IP~~~~~~~diR~~~~e~~~~v~~~i~~~~~~~~~~~~~~e 104 (113)
T d1cg2a2 64 IPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVK 104 (113)
T ss_dssp ECSEEEEEEEEEESSHHHHHHHHHHHHHHHTSCSSTTCEEE
T ss_pred eCCEEEEEEEEecCCHHHHHHHHHHHHHHHHhhccCCCEEE
Confidence 99999999999999999999999999998873 23456666
|
| >d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: IAA-amino acid hydrolase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.57 E-value=5e-16 Score=125.22 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=54.3
Q ss_pred eeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCcccccc
Q 013216 210 CPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQ 288 (447)
Q Consensus 210 G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~i 288 (447)
|..+|+|+|+|+++|+|.|+.| ||+.++++++..|+.+.....+ .....+++++.+++|+ +.|+|
T Consensus 2 g~~~f~I~v~Gk~~Has~P~~g~nai~~~~~~i~~l~~~~~~~~~--------~~~~~~~~~g~i~gG~------a~NvI 67 (119)
T d1xmba2 2 GAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETD--------PLDSKVVTVSKVNGGN------AFNVI 67 (119)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTTCBCCSS--------GGGCEEEEEEEEC--------------
T ss_pred CceEEEEEEEeecccccCcccCCCHHHHHHHHHHhhhhccccccC--------cccccceeEEEcccCc------cceec
Confidence 6788999999999999999999 9999999999999876432211 1123578899999887 89999
Q ss_pred CCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEe
Q 013216 289 PSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFE 327 (447)
Q Consensus 289 P~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~ 327 (447)
|++|++.+++|+.+.+ +.+.++|+++++. ..++++++
T Consensus 68 P~~a~~~~~iR~~~~~--~~i~~~i~~~~~~~a~~~g~~~~ 106 (119)
T d1xmba2 68 PDSITIGGTLRAFTGF--TQLQQRVKEVITKQAAVHRCNAS 106 (119)
T ss_dssp CCEEEEEEEEEESSCH--HHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CCeEEEEEEEecCChH--HHHHHHHHHHHHHHHHHhCCeEE
Confidence 9999999999988643 4677888777752 34566666
|
| >d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: FolH catalytic domain-like domain: Glutamate carboxypeptidase II FOLH1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.6e-13 Score=127.26 Aligned_cols=133 Identities=19% Similarity=0.213 Sum_probs=107.4
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec------CCCCeEEEEecCCCCCCCeEEEee
Q 013216 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA------KNKPLILLKWPGSNPQLPSILLNS 97 (447)
Q Consensus 24 ~~~~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~------~~~~nl~~~~~g~~~~~~~ill~~ 97 (447)
+.+.+++.+.++.+.++|....+....++++||.+.++++|++....... ....||+|+++|+....+.|++.+
T Consensus 8 e~~~~~~~~~l~~~~~~p~~~gs~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~Nvi~~i~G~~~~~~~ii~~a 87 (304)
T d3bi1a3 8 ELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLEVTRIYNVIGTLRGAVEPDRYVILGG 87 (304)
T ss_dssp HCCHHHHHHHHHHHSSSCCCTTSHHHHHHHHHHHHHHHHHTCSEEEEEEEEEEEEEEEEEEEEEEECCSSEEEEEEEEEE
T ss_pred HhCHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHhCCcceeeeeeecccCcceeEEEEEEEECCCCCCcEEEEEe
Confidence 45678899999999999998655566789999999999999976533221 123499999999753236799999
Q ss_pred ccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHH---HcCCCCceeEEEEeecCcccCcccCHH
Q 013216 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLK---ASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (447)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~---~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (447)
|+|++.. |+.|+.+|++++|++++.|. +.+.+|+++|+|++..+||.|. .|++
T Consensus 88 H~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~~~~p~~ti~f~~~~~EE~gl-~Gs~ 143 (304)
T d3bi1a3 88 HRDSWVF-----------------------GGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEEFGL-LGST 143 (304)
T ss_dssp ECCCSSC-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESSGGGTS-HHHH
T ss_pred ccccccC-----------------------CCCCCcchhHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCccccc-cchH
Confidence 9998542 67899999999999999765 4677899999999999999984 7999
Q ss_pred HHHccc
Q 013216 175 KFADSH 180 (447)
Q Consensus 175 ~~~~~~ 180 (447)
+++++.
T Consensus 144 ~~~~~~ 149 (304)
T d3bi1a3 144 EWAEEN 149 (304)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 998753
|
| >d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Allantoate amidohydrolase AllC species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=4.2e-13 Score=107.60 Aligned_cols=102 Identities=7% Similarity=0.061 Sum_probs=78.0
Q ss_pred eeEEEEEEEeecCCcc-CCCC-CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCcccc
Q 013216 210 CPWWLVIKARGAPGHG-AKLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMN 286 (447)
Q Consensus 210 G~~~~~i~v~G~~~Hs-~~p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n 286 (447)
|..|++|+|+|+++|+ +.|+ .+ ||+..++.++..+..+.... .............+|. +.|
T Consensus 2 G~~~~~v~~~G~~aHAGs~P~~~~~~al~aaa~~~~~l~~~~~~~----------~~~~~~~~~~~~~g~~------~~N 65 (117)
T d1z2la2 2 GQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRM----------GDPLVLTFGKVEPRPN------TVN 65 (117)
T ss_dssp EEEEEEEEEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHHH----------CTTCEEECCCEEEESC------CTT
T ss_pred CceEEEEEEEEECCCCCCCcccccccHHHHHHHHHHHHHHHHHhc----------cCCccceEEEEEecCC------ccc
Confidence 7899999999999998 5685 45 99999999999887643211 1111222333334443 899
Q ss_pred ccCCceEEEEeeecCCCCCHHHHHHHHHHHhcc--CCCCceEe
Q 013216 287 LQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFE 327 (447)
Q Consensus 287 ~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~ 327 (447)
+||++|++.+|+|+.+.+..+++.+++++.++. ..++++++
T Consensus 66 vIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~ 108 (117)
T d1z2la2 66 VVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGID 108 (117)
T ss_dssp EECCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred eeCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 999999999999999999999999999988873 34677777
|
| >d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Glutaminyl-peptide cyclotransferase-like domain: Glutaminyl-peptide cyclotransferase, QPCT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.1e-12 Score=121.56 Aligned_cols=123 Identities=19% Similarity=0.144 Sum_probs=92.2
Q ss_pred cCCCCCCChhHHHHHHHHHHHHCCCceE--EEeec-------CCCCeEEEEecCCCCCCCeEEEeeccccCCCCCCCCCc
Q 013216 41 DTSQPNPDYTNASKFILAQAEALSLESQ--TLEFA-------KNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111 (447)
Q Consensus 41 ps~s~~~~e~~~~~~i~~~l~~~G~~~~--~~~~~-------~~~~nl~~~~~g~~~~~~~ill~~H~Dtvp~~~~~W~~ 111 (447)
|-...+.+..++++||.+.|+++|.+.. ..... ....||+|+++|+. .+.|++.||+|+++.+..
T Consensus 44 pR~~Gs~g~~~a~~~i~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~Nvia~l~g~~--~~~ili~aHyDs~~~~~~---- 117 (329)
T d2afwa1 44 ERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPTA--KRHLVLACHYDSKYFSHW---- 117 (329)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHTSSSCCEEEEEEEEECCTTSSEEEEEEEEESSTTS--SEEEEEEEECCCCCCCCB----
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEeccccCCceeEEEEEEeCCCC--CceEEEEeeeccCCcccc----
Confidence 5544456677899999999999986543 32221 02359999998863 378999999999987631
Q ss_pred CCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHc--------CCCCceeEEEEeecCcccCc-------ccCHHHH
Q 013216 112 HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS--------GFQPVRSVYLSFVPDEEIGG-------HDGAEKF 176 (447)
Q Consensus 112 ~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~--------~~~~~~~i~~~~~~~EE~g~-------~~G~~~~ 176 (447)
++. .-.|+.|+..|+|++|++++.|.+. +.+++++|.|+|..+||.|. +.|++++
T Consensus 118 ---------~~~-~~pGA~DnaSGvA~lLElAR~l~~~~~~~~~~~~~~p~~tI~fv~f~gEE~G~~~~~~~~l~GS~~~ 187 (329)
T d2afwa1 118 ---------NNR-VFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHL 187 (329)
T ss_dssp ---------TTB-CCCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSCSSSCCSSSSCHHHHHH
T ss_pred ---------ccc-CCCCCCCccHHHHHHHHHHHHHHHhhhhhhhcccCCCCceEEEEEecccccccccccccccccHHHH
Confidence 111 1249999999999999999999863 45788999999999999872 4699999
Q ss_pred Hcc
Q 013216 177 ADS 179 (447)
Q Consensus 177 ~~~ 179 (447)
+++
T Consensus 188 a~~ 190 (329)
T d2afwa1 188 AAK 190 (329)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Probab=99.28 E-value=3.8e-12 Score=111.62 Aligned_cols=107 Identities=10% Similarity=0.014 Sum_probs=80.6
Q ss_pred eeeeeeEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhh--HHHHHhc--cccCC-------Ccceeeeeee
Q 013216 206 YAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQ--FDLVKAG--LKAEG-------EVVSVNMAFL 273 (447)
Q Consensus 206 ~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~--~~~~~~~--~~~~~-------~~~t~~~~~i 273 (447)
..+++...++|+++|+++|+|.|+.| |||..++++|..|+...... .+.+... ....+ ...+.+...+
T Consensus 65 ~~~~~~~~~~i~~~Gk~aHss~P~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~t~ 144 (196)
T d1lfwa2 65 SFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLGIFHHDDLMGDLAS 144 (196)
T ss_dssp EEEEETTEEEEEEECBCCBTTCGGGSBCHHHHHHHHHTTSCBCHHHHHHHHHHHHTTTTCTTSTTTTCCCEETTTEECEE
T ss_pred EEEEecceEEEEEEEEECCccCcccCcCHHHHHHHHHHHhhhccchhhhhhhhhhhhcccccccccCCcccCceecCeEE
Confidence 34567778999999999999999999 99999999998876543211 1111110 01111 1124566777
Q ss_pred ecCCCCCCCccccccCCceEEEEeeecCCCCCHHHHHHHHHHHhc
Q 013216 274 KAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (447)
Q Consensus 274 ~~g~~~~~~~~~n~iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~ 318 (447)
++|. ..|++|++|++.+|+|+++..+.+++.++|++.+.
T Consensus 145 ~~G~------~~n~~p~~~~~~~diR~p~~~~~e~i~~~i~~~~~ 183 (196)
T d1lfwa2 145 SPSM------FDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFS 183 (196)
T ss_dssp EEEE------EEEETTSCEEEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred eeee------EeeccCCeEEEEEEEccCCCCCHHHHHHHHHHHhc
Confidence 7776 88999999999999999999999999999998886
|
| >d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Peptidase-like beta-alanine synthase species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.27 E-value=4.3e-12 Score=101.36 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=71.2
Q ss_pred eEEEEEEEeecCCcc-CCCC-CC-CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCccccc
Q 013216 211 PWWLVIKARGAPGHG-AKLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNL 287 (447)
Q Consensus 211 ~~~~~i~v~G~~~Hs-~~p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~ 287 (447)
..||+|+|+|+++|+ +.|+ .+ ||+..++.++..++.+.... . ...+++.+..|. .+.|+
T Consensus 2 ~~W~~v~v~G~~aHAGs~P~~~~~da~~aa~~~i~~l~~~~~~~-----------~--~~~tv~~~~~g~-----~~~Nv 63 (116)
T d1r3na2 2 YNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQRH-----------N--GLFTCGIIDAKP-----YSVNI 63 (116)
T ss_dssp EEEEEEEEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHHT-----------T--CEEECCCEEEES-----CCTTE
T ss_pred ceEEEEEEEEECcccCCCcccccchHHHHHHHHHhhcccccccC-----------C--ceEEEEEEEecC-----cccce
Confidence 468999999999997 4584 55 99999999999987653211 1 244455555442 27899
Q ss_pred cCCceEEEEeeecCCCCCHHHHHHHHHHHhc
Q 013216 288 QPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (447)
Q Consensus 288 iP~~~~~~~d~R~~~~~~~~~i~~~i~~~~~ 318 (447)
||++|++.+|+|..+.+..+.+.++|++.++
T Consensus 64 IP~~a~~~~d~R~~~~~~~~~i~~~i~~~~~ 94 (116)
T d1r3na2 64 IPGEVSFTLDFRHPSDDVLATMLKEAAAEFD 94 (116)
T ss_dssp ECSEEEEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eCCEEEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988776
|
| >d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: FolH catalytic domain-like domain: Transferrin receptor ectodomain, protease-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.1e-11 Score=115.31 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=97.3
Q ss_pred hHHHHHHHhhhcc---cCCCCCCChhHHHHHHHHHHHHCCCceEEEeec----CCCCeEEEEecCCCCCCCeEEEeeccc
Q 013216 28 DSIIERFRAYLQI---DTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTD 100 (447)
Q Consensus 28 ~~~~~~l~~l~~i---ps~s~~~~e~~~~~~i~~~l~~~G~~~~~~~~~----~~~~nl~~~~~g~~~~~~~ill~~H~D 100 (447)
.++...++.|-+. |....+.+..++++||.++|+++|++....+.. ....||+|+++|.....+.|++.||+|
T Consensus 17 ~~~~~~i~~l~~~~~~~R~~gs~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~Nvig~i~G~~~~~~~ivigaH~D 96 (294)
T d1de4c3 17 TDFTSTIKLLNENSYVPREAGSQKDENLALYVENQFREFKLSKVWRDQHFVKEIKILNIFGVIKGFVEPDHYVVVGAQRD 96 (294)
T ss_dssp CCHHHHHHHTTSTTTSSCCTTSHHHHHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEEEECCSSEEEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCccccccccccCCccceEEEEEeCCCCCCceEEEEeecc
Confidence 3444555555432 222234456789999999999999975433321 123599999999754335799999999
Q ss_pred cCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHH----cCCCCceeEEEEeecCcccCcccCHHHH
Q 013216 101 VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA----SGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (447)
Q Consensus 101 tvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~----~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (447)
+.. .|+.|+..|++++|++++.|.+ .+++|+++|+|++..+||.| +.|++++
T Consensus 97 s~~-----------------------~GA~DnasG~a~llelar~l~~~~~~~g~~P~rtI~f~~~~~EE~G-l~GS~~~ 152 (294)
T d1de4c3 97 AWG-----------------------PGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFG-SVGATEW 152 (294)
T ss_dssp CSS-----------------------CCTTTTHHHHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEECCCTTT-SHHHHHH
T ss_pred ccc-----------------------ccccCCchhHHHHHHHHHHHHhhhhhcCCCCCceEEEEEecCcccc-ccCHHHH
Confidence 842 3889999999999999999965 47889999999999999998 4799999
Q ss_pred Hccc
Q 013216 177 ADSH 180 (447)
Q Consensus 177 ~~~~ 180 (447)
+++.
T Consensus 153 ~~~~ 156 (294)
T d1de4c3 153 LEGY 156 (294)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 9764
|
| >d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Frv operon protein FrvX, catalytic domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.30 E-value=4.1e-06 Score=75.04 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=45.6
Q ss_pred CCCcchHHH--HHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhh
Q 013216 377 PASTDARYF--RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 434 (447)
Q Consensus 377 ~g~~D~~~~--~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~~ 434 (447)
.|++|+..+ ++.|+|++.+|.+.. ..|++.|.++++++...++++..+++.|.+.
T Consensus 132 ~gGtd~~~i~~~~~Gi~t~~igiP~r---ymHS~~E~~~~~Di~~~~kLl~~~l~~l~e~ 188 (255)
T d1y0ya2 132 GGGTDAGAIHLTKAGVPTGALSVPAR---YIHSNTEVVDERDVDATVELMTKALENIHEL 188 (255)
T ss_dssp SCCCTHHHHTTSTTCCCEEEEEEEEB---SCSSSCEEEEHHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCccHHHHHHhCCCCCEEEeccccc---cCcchhheeeHHHHHHHHHHHHHHHHHhhhH
Confidence 467887764 466999998886655 4899999999999999999999999988543
|
| >d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Frv operon protein FrvX, catalytic domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.42 E-value=9.7e-06 Score=72.52 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHhhhcccCCCCCCChh-HHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCeEEEeeccccC
Q 013216 30 IIERFRAYLQIDTSQPNPDYT-NASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (447)
Q Consensus 30 ~~~~l~~l~~ips~s~~~~e~-~~~~~i~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ill~~H~Dtv 102 (447)
-.++|++|++.|++| +.|. .+++++.+++++++.+++. | ...|+++..+|+ +|+|||.||||.|
T Consensus 191 ~~~~l~~l~~~~~~s--g~E~~~v~~~~~~~~~~~~d~~~~-D---~~Gn~~~~~~~~---~~~i~~~aH~Dei 255 (255)
T d1y0ya2 191 DYELLKKVVEAPGVS--GYEFLGIRDVVIEEIKDYVDEVKV-D---KLGNVIAHKKGE---GPKVMIAAHMDQI 255 (255)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCCC--CCccHHHHHHHHHHHHhhCCeEEE-C---CCCCEEEEEcCC---CCEEEEEeccccC
Confidence 367899999999985 7784 6899999999999877663 3 344999998764 4899999999975
|
| >d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Probable aminopeptidase ApeA species: Borrelia burgdorferi [TaxId: 139]
Probab=95.06 E-value=0.013 Score=53.02 Aligned_cols=135 Identities=22% Similarity=0.247 Sum_probs=78.9
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceE----EEe------ecCCCCeEEEEecCCCC-CCCeEEE
Q 013216 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ----TLE------FAKNKPLILLKWPGSNP-QLPSILL 95 (447)
Q Consensus 27 ~~~~~~~l~~l~~ips~s~~~~e~~~~~~i~~~l~~~G~~~~----~~~------~~~~~~nl~~~~~g~~~-~~~~ill 95 (447)
++++.+..++++.+=.-+ +.+..+.+++.++|++.||..- ..+ .......|++...|+.+ ...--++
T Consensus 12 ~~~~~~~a~~~~~Fl~~~--~T~~hav~~~~~~L~~~GF~~l~e~~~~~~g~k~y~~~~~~sliaf~iG~~~~~~G~~ii 89 (322)
T d1y7ea2 12 KNQILNFSESYKKFISKF--KTEREVTAYALDKAKKLGFINAEEKKNLMPGDKIFYTCREKSVAFAIIGKNPIEDGMNFI 89 (322)
T ss_dssp HHHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHTTTCEESTTCCCCCTTCEEECBCSSSCBCCEECCSSCGGGCCEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHCcCeECCCCCcccCCCeEEEEeCCCEEEEEEeCCCCccCCeEEE
Confidence 445666676777665543 4677899999999999998431 111 11122357766666543 2223467
Q ss_pred eeccccCCCCCCCCCcCCCceeeCCCCcEEecCcccchhHHHHHHHHHHHHHHcCCCCceeEEEEeecCcccCcccCH
Q 013216 96 NSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (447)
Q Consensus 96 ~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (447)
.+|.|.--.. ..+|...-.+ +..|.+.| -|+..++-+.|.|+ .+....+....+++++..||.|+ .|+
T Consensus 90 gaHtDSPr~~----a~~~~~~G~d-~efi~s~r-lDd~~~~~~~l~Al---i~~~~~~~~~~v~~~~D~EEIGS-~s~ 157 (322)
T d1y7ea2 90 VSHTDSPRVP----AGTAKDVGFD-KALIGAYG-QDDKICVFTSLESI---FDLEETPNKTAICFLVDKEEIGS-TGS 157 (322)
T ss_dssp CCBCCCCBEE----CSCCEEETTT-TCEEEESS-HHHHHHHHHHHHHH---SSSSCCCSSCEECCCBCSTTC------
T ss_pred EEecCCCchh----hccccccccc-cceeeccC-CccHHHHHHHHHHH---HhhhcCCCceEEEEEecccccCC-Ccc
Confidence 9999974221 1123333343 56666666 67777776666664 44333455667778888999986 344
|
| >d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Peptidase T (tripeptidase) species: Salmonella typhimurium [TaxId: 90371]
Probab=95.00 E-value=0.047 Score=40.88 Aligned_cols=88 Identities=20% Similarity=0.084 Sum_probs=62.4
Q ss_pred eEEEEEEEeecCCccCCCCCC--CHHHHHHHHHHHHHhchhhhHHHHHhccccCCCcceeeeeeeecCCCCCCCcccccc
Q 013216 211 PWWLVIKARGAPGHGAKLYDN--SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQ 288 (447)
Q Consensus 211 ~~~~~i~v~G~~~Hs~~p~~g--nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~g~~~~~~~~~n~i 288 (447)
....+|+|+|...|-|..-.- ||+..++++++.|-.-..+ -...+..--+.+..++|+.
T Consensus 3 Aa~a~i~i~G~svHPG~AKgkMvNA~~~A~ef~~~LP~~e~P--------E~Teg~EGF~hl~~~~G~v----------- 63 (113)
T d1fnoa3 3 AASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADEAP--------ETTEGYEGFYHLASMKGTV----------- 63 (113)
T ss_dssp EEEEEEEEECBCCCGGGCTTTCBCHHHHHHHHHHTSCTTSSG--------GGCCTTCCEEEEEEEEECS-----------
T ss_pred cceEEEEEEEEEeCCcchhhHHHhHHHHHHHHHHhCCCCCCC--------CccCCccceEEEeeeeech-----------
Confidence 456899999999997764333 9999999998887432111 1112222245667777664
Q ss_pred CCceEEEEeeecCCCCCHHHHHHHHHHHhc
Q 013216 289 PSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (447)
Q Consensus 289 P~~~~~~~d~R~~~~~~~~~i~~~i~~~~~ 318 (447)
+.+++.+-+|-.+....+.-++.++++++
T Consensus 64 -e~a~l~yIIRDfd~~~f~~rk~~l~~~~~ 92 (113)
T d1fnoa3 64 -DRAEMHYIIRDFDRKQFEARKRKMMEIAK 92 (113)
T ss_dssp -SEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred -HHEEEEEEEeeCCHHHHHHHHHHHHHHHH
Confidence 89999999999998888777777777665
|
| >d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Probable aminopeptidase ApeA species: Borrelia burgdorferi [TaxId: 139]
Probab=94.04 E-value=0.014 Score=52.84 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCce------ecCCCcchHHHHHcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013216 350 DSSNPWWNLLEEAVRKANGKLGKPE------IFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 423 (447)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~~~------~~~g~~D~~~~~~~g~p~~~~gp~~~~~~~~H~~~E~v~~~~l~~~~~~ 423 (447)
..+..++..+++.+++.+.+. +.. ..+|+|++.++++.|+|++-+|.... ..|++.|-+...|+...+++
T Consensus 240 ~a~~~~~~~~~~ia~~~~Ip~-Q~~~v~r~d~~gGsTig~i~a~~Gi~tvdiGiP~l---~MHS~rE~~~~~D~~~~~~l 315 (322)
T d1y7ea2 240 DADAELVSYIRQLLNKNNIAW-QVATLGKVEEGGGGTVAKFLAGYGIRTIDMGPAVI---SMHSPMEITSKFDLYNAYLA 315 (322)
T ss_dssp --CHHHHHHHHHHHHHHTCCE-EEEEECC-----CHHHHHHHHHHTCEEEEECCEEB---STTSSSEEEEHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhcCCCe-eEEEeccCCCCCcchHHHHHhcCCCCEEEcCHHHh---hhhHHHHHhchhhHHHHHHH
Confidence 335567888888888877654 211 23478899999889999999998766 49999999999999999998
Q ss_pred HHHHH
Q 013216 424 YESII 428 (447)
Q Consensus 424 ~~~~l 428 (447)
|..++
T Consensus 316 ~~aF~ 320 (322)
T d1y7ea2 316 YKAFY 320 (322)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 87654
|