Citrus Sinensis ID: 013218

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEEcccccccccEEEEEEEEEccccEEcccccEEEEEccEEEEEEcccccEEEEEEEEccccEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHcccccEEcccEEEcHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEccccccEEEEccccEEEEccccccEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccccEEEEEccccEEEEEEEccccEEEEccEEEcccccHHHccHHHHHHHHHHHHHHHccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEEcccccccccHEEEEEEEEcccccEccccEEEEEEcccEEEEEccccccEEEEEEEccccEEEEccEEEEEcccccccccccccccccccccccHccccccccccccccccccHHHHHHHHHccccHHHccccccccEEEHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHcHHHcEEEccccccEEEcccccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHHcccccHHHHccccEEEEEccccccccccccccccccEEEEEcccEEEEEEEcccEEEEEcHEEEEEEcccEEEcHHHHHHHHHHHHHHHHcHHHHHHccc
Coil and Loop (DISEMBL)
mpsmvsrccysnhaladlpasgivdvplaqtgegiaECELLKWFVKEGDeieefqplcavqsdkatIEITSRYKGKVAQllhapgnivKVGETLLKLVvgdsavptpssdvlesvkppgsenspdsklnkdtvggvlatpTVRNLAKLYginlydvdatgkdgrvLKEDVLKYAVQkgaadgpstasvSADCREQLlgeeetypqtfaevkwypddktvplrgfQRTMVKTMSMAakiphfhyveeINCDALVKLKASfqnnnsdpnikhtfLPSLIKSLSMAMSkypfmnscfnEESLEVILKGSHNIGIAMATqhglavpniknvqslSILEITKELSRLQQLAkdnelnpadnsggtitlsnigaiggkfgapllnlpeVAIIAMGriekvprlsddgnvypspimtvnigadhrvldgATVAKFCNEWKQLIENPELLLLQMR
Flexible Loop (DISEMBL)
MPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFqplcavqsdKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDsavptpssdvlesvkppgsenspdsklnkdtvggvlatptvrnLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQkgaadgpstasvSADCREQLLGEEEtypqtfaevkwypddktvpLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFqnnnsdpnikHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDnelnpadnsGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIekvprlsddgnvyPSPIMTVNIGADHRVLDGATVAKFCNEWKQLienpellllqmr
Low Complexity Region (SEG)
MPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
Disordered region (IsUnstruct)
******RCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD*******************************VGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ*******************LLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNN*DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSR*****************GTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL***
Disordered Region (DISOPRED)
*************************VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK********************************************TVRNLAKLYGINLYDVDATGKDGRVLKEDVLK************************************************LRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQ*****PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
Disordered Region (DISEMBL)
MPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVP**********************LNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ*************ADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
Disordered Region (DISPRO)
***********NHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV***************************************TP*VRN****YGINLYDVDATGKDGRVLKEDVLKYAVQK*******************************************LRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	447	2.2.26 [Sep-21-2011]
P11182	482	Lipoamide acyltransferase	yes	no	0.935	0.867	0.417	4e-89
Q23571	448	Lipoamide acyltransferase	yes	no	0.932	0.930	0.426	1e-88
P53395	482	Lipoamide acyltransferase	yes	no	0.932	0.865	0.421	2e-88
P11181	482	Lipoamide acyltransferase	yes	no	0.926	0.858	0.402	1e-84
P65636	430	Dihydrolipoyllysine-resid	yes	no	0.923	0.960	0.352	1e-63
P65635	430	Dihydrolipoyllysine-resid	yes	no	0.923	0.960	0.352	1e-63
Q8CT13	433	Dihydrolipoyllysine-resid	yes	no	0.921	0.951	0.347	1e-63
Q8NX76	430	Dihydrolipoyllysine-resid	yes	no	0.923	0.960	0.352	2e-63
Q6GAB9	430	Dihydrolipoyllysine-resid	yes	no	0.923	0.960	0.352	2e-63
Q5HGY9	430	Dihydrolipoyllysine-resid	yes	no	0.923	0.960	0.352	2e-63

>sp|P11182|ODB2_HUMAN Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DBT PE=1 SV=3

 Score =  328 bits (842), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 178/426 (41%), Positives = 257/426 (60%), Gaps = 8/426 (1%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
           +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct: 64  VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 123

Query: 83  APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 142
              +I  VG+ L+   +   A+     DV+E+      E++      + T    LATP V
Sbjct: 124 NLDDIAYVGKPLVD--IETEALKDSEEDVVETPAVSHDEHTHQEIKGRKT----LATPAV 177

Query: 143 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEET 202
           R LA    I L +V  +GKDGR+LKED+L Y  ++  A  P +  V          ++ T
Sbjct: 178 RRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSPKVEI-MPPPPKPKDMT 236

Query: 203 YPQTFAEVKWYP-DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQN 261
            P   ++   +   DKT P++GFQ+ MVKTMS A KIPHF Y +EI+   LVKL+   + 
Sbjct: 237 VPILVSKPPVFTGKDKTEPIKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKP 296

Query: 262 NNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAV 321
                 IK +F+P  +K+ S+ + ++P +N+  +E    +  K SHNIGIAM T+ GL V
Sbjct: 297 IAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIV 356

Query: 322 PNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLP 381
           PN+KNVQ  SI +I  EL+RLQ+L    +L+  D +GGT TLSNIG+IGG F  P++  P
Sbjct: 357 PNVKNVQICSIFDIATELNRLQKLGSVGQLSTTDLTGGTFTLSNIGSIGGTFAKPVIMPP 416

Query: 382 EVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPEL 441
           EVAI A+G I+ +PR +  G VY + IM V+  ADHRV+DGAT+++F N WK  +ENP  
Sbjct: 417 EVAIGALGSIKAIPRFNQKGEVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLENPAF 476

Query: 442 LLLQMR 447
           +LL ++
Sbjct: 477 MLLDLK 482

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 6EC: 8

>sp|Q23571|ODB2_CAEEL Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=ZK669.4 PE=3 SV=1

 Score =  327 bits (837), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 182/427 (42%), Positives = 261/427 (61%), Gaps = 10/427 (2%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
           +V   L+  GEGIAE ++ +W+VKEGD I +F  +C VQSDKA + I+ RY G V +L H
Sbjct: 30  VVQFKLSDIGEGIAEVQVKEWYVKEGDTISQFDKVCEVQSDKAAVTISCRYDGIVKKLYH 89

Query: 83  APGNIVKVGETLLKLVV-GDSAVP-TPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATP 140
               + +VG+ L+ + + G+   P  P  +   S       ++P +  +  + G VLATP
Sbjct: 90  EVDGMARVGQALIDVEIEGNVEEPEQPKKEAASSSPEAPKSSAPKAPESAHSEGKVLATP 149

Query: 141 TVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEE 200
            VR +A    I L +V  TGKDGRVLKEDVLK+  Q  A       S S + R      +
Sbjct: 150 AVRRIAIENKIKLAEVRGTGKDGRVLKEDVLKFLGQVPA----DHTSGSTNIRTTHQAPQ 205

Query: 201 ETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQ 260
            +  +++  +K   +D  VP+RG+ R MVKTM+ A KIPHF Y +EIN D+LVK +A  +
Sbjct: 206 PS-SKSYEPLK---EDVAVPIRGYTRAMVKTMTEALKIPHFGYNDEINVDSLVKYRAELK 261

Query: 261 NNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLA 320
               + +IK +++P  IK+ S+A+ +YP +NS  +E+   VI K SHNI +AM T  GL 
Sbjct: 262 EFAKERHIKLSYMPFFIKAASLALLEYPSLNSTTDEKMENVIHKASHNICLAMDTPGGLV 321

Query: 321 VPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNL 380
           VPNIKN +  SI EI +EL+RL +  K  ++   D   GT +LSNIG IGG + +P++  
Sbjct: 322 VPNIKNCEQRSIFEIAQELNRLLEAGKKQQIKREDLIDGTFSLSNIGNIGGTYASPVVFP 381

Query: 381 PEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 440
           P+VAI A+G+IEK+PR     NV P  IM V+  ADHRV+DGAT+A+F N WK  +E+P 
Sbjct: 382 PQVAIGAIGKIEKLPRFDKHDNVIPVNIMKVSWCADHRVVDGATMARFSNRWKFYLEHPS 441

Query: 441 LLLLQMR 447
            +L Q++
Sbjct: 442 AMLAQLK 448

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 8

>sp|P53395|ODB2_MOUSE Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dbt PE=2 SV=2

 Score =  326 bits (835), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/427 (42%), Positives = 257/427 (60%), Gaps = 10/427 (2%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
           +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct: 64  VVQFKLSDIGEGIREVTIKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKRLYY 123

Query: 83  APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 142
              +I  VG+ L+   +   A+     DV+E+      E++      + T    LATP V
Sbjct: 124 NLDDIAYVGKPLID--IETEALKDSEEDVVETPAVSHDEHTHQEIKGQKT----LATPAV 177

Query: 143 RNLAKLYGINLYDVDATGKDGRVLKEDVLKY-AVQKGAADGPSTASVSADCREQLLGEEE 201
           R LA    I L +V  +GKDGR+LKED+L +   Q GA   PS  S       Q   ++ 
Sbjct: 178 RRLAMENNIKLSEVVGSGKDGRILKEDILSFLEKQTGAILPPSPKSEITPPPPQ--PKDR 235

Query: 202 TYPQTFAEVKWYP-DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQ 260
           T+P   A+   +   D+T P+ GFQ+ MVKTMS A KIPHF Y +EI+   LVKL+   +
Sbjct: 236 TFPTPIAKPPVFTGKDRTEPVTGFQKAMVKTMSAALKIPHFGYCDEIDLTQLVKLREELK 295

Query: 261 NNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLA 320
                  IK +F+P  +K+ S+ + ++P +N+  +E    +  K SHNIGIAM T+ GL 
Sbjct: 296 PVALARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTELGLI 355

Query: 321 VPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNL 380
           VPN+KNVQ  S+ EI  EL+RLQ+L    +L   D +GGT TLSNIG+IGG +  P++  
Sbjct: 356 VPNVKNVQVRSVFEIAMELNRLQKLGSSGQLGTTDLTGGTFTLSNIGSIGGTYAKPVILP 415

Query: 381 PEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 440
           PEVAI A+G I+ +PR    G+VY + IM V+  ADHRV+DGAT+++F N WK  +ENP 
Sbjct: 416 PEVAIGALGAIKALPRFDQKGDVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLENPA 475

Query: 441 LLLLQMR 447
            +LL ++
Sbjct: 476 FMLLDLK 482

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 8

>sp|P11181|ODB2_BOVIN Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Bos taurus GN=DBT PE=1 SV=2

 Score =  313 bits (803), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 173/430 (40%), Positives = 253/430 (58%), Gaps = 16/430 (3%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
           IV   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct: 64  IVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 123

Query: 83  APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 142
              +   VG+ L+   +   A+     DV+E+      E++      + T    LATP V
Sbjct: 124 NLDDTAYVGKPLVD--IETEALKDSEEDVVETPAVSHDEHTHQEIKGQKT----LATPAV 177

Query: 143 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSA-----DCREQLL 197
           R LA    I L +V  +GKDGR+LKED+L Y  ++  A  P +            +++ +
Sbjct: 178 RRLAMENNIKLSEVIGSGKDGRILKEDILNYLEKQTGAILPPSPKAEIMPPPPKPKDRTI 237

Query: 198 GEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKA 257
               + P  F        D+T P++GF + MVKTMS A KIPHF Y +E++   LVKL+ 
Sbjct: 238 PIPISKPPVFIG-----KDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLRE 292

Query: 258 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH 317
             +       IK +F+P  +K+ S+ + ++P +N+  +E    +  K SHNIGIAM T+ 
Sbjct: 293 ELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQ 352

Query: 318 GLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPL 377
           GL VPN+KNVQ  SI EI  EL+RLQ+L    +L+  D  GGT TLSNIG+IGG +  P+
Sbjct: 353 GLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPV 412

Query: 378 LNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 437
           +  PEVAI A+G I+ +PR ++ G V  + IM V+  ADHR++DGATV++F N WK  +E
Sbjct: 413 ILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLE 472

Query: 438 NPELLLLQMR 447
           NP  +LL ++
Sbjct: 473 NPAFMLLDLK 482

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 8

>sp|P65636|ODP2_STAAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain N315) GN=pdhC PE=1 SV=1

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 15/428 (3%)

Query: 28  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 87
           L   GEGI E E++KWFVK GD IEE   L  VQ+DK+ +EI S   G V +++   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVMVEEGTV 66

Query: 88  VKVGETLLKLVVGDSA--VPTPSSDVLESVKPPGSENSPDSKL-------NKDTVGGVLA 138
             VG+ ++K+   D+         D   S + P  E +P  +          D    V A
Sbjct: 67  AVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDENRTVKA 126

Query: 139 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 198
            P+VR  A+  G+N+  V  +GK+GR+ KEDV  Y +  GA    + ++ SA   E  + 
Sbjct: 127 MPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAY-LNGGAPTASNESAASATSEE--VA 183

Query: 199 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKA 257
           E    P   +    +P+  T  +   +R + K M  +    PH   ++EI+  AL   + 
Sbjct: 184 ETPAAPAAVSLEGDFPE-TTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQALWDHRK 242

Query: 258 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH 317
            F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ E++ K   NIGIA  T  
Sbjct: 243 KFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDR 302

Query: 318 GLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPL 377
           GL VP +K+    SI +I+ E++ L   A+D +L   +  G T T+SNIG+ GG++  P+
Sbjct: 303 GLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPV 362

Query: 378 LNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 437
           +N PEVAI+ +GRI + P +  DG +  +P++ +++  DHR +DGAT     N  K+L+ 
Sbjct: 363 INHPEVAILGIGRIAQKP-IVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLN 421

Query: 438 NPELLLLQ 445
           NPELLL++
Sbjct: 422 NPELLLME 429

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain N315) (taxid: 158879)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P65635|ODP2_STAAM Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhC PE=1 SV=1

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 15/428 (3%)

Query: 28  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 87
           L   GEGI E E++KWFVK GD IEE   L  VQ+DK+ +EI S   G V +++   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVMVEEGTV 66

Query: 88  VKVGETLLKLVVGDSA--VPTPSSDVLESVKPPGSENSPDSKL-------NKDTVGGVLA 138
             VG+ ++K+   D+         D   S + P  E +P  +          D    V A
Sbjct: 67  AVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDENRTVKA 126

Query: 139 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 198
            P+VR  A+  G+N+  V  +GK+GR+ KEDV  Y +  GA    + ++ SA   E  + 
Sbjct: 127 MPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAY-LNGGAPTASNESAASATSEE--VA 183

Query: 199 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKA 257
           E    P   +    +P+  T  +   +R + K M  +    PH   ++EI+  AL   + 
Sbjct: 184 ETPAAPAAVSLEGDFPE-TTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQALWDHRK 242

Query: 258 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH 317
            F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ E++ K   NIGIA  T  
Sbjct: 243 KFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDR 302

Query: 318 GLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPL 377
           GL VP +K+    SI +I+ E++ L   A+D +L   +  G T T+SNIG+ GG++  P+
Sbjct: 303 GLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPV 362

Query: 378 LNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 437
           +N PEVAI+ +GRI + P +  DG +  +P++ +++  DHR +DGAT     N  K+L+ 
Sbjct: 363 INHPEVAILGIGRIAQKP-IVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLN 421

Query: 438 NPELLLLQ 445
           NPELLL++
Sbjct: 422 NPELLLME 429

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain Mu50 / ATCC 700699) (taxid: 158878)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8CT13|ODP2_STAES Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhC PE=3 SV=1

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 150/432 (34%), Positives = 230/432 (53%), Gaps = 20/432 (4%)

Query: 28  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 87
           L   GEGI E E++KWF+K GD IEE   L  VQ+DK+ +EI S   G V ++L   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFIKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVLVDEGTV 66

Query: 88  VKVGETLLKLVV-----------GDSAVPTPSSDVLES-VKPPGSENSPDSKLNKDTVGG 135
             VG+ ++K+             GD           ES V+   S      K   D    
Sbjct: 67  AVVGDVIVKIDAPDAEEMQFKGHGDDEDSKKEEKEQESPVQEEASSTQSQEKTEVDESKT 126

Query: 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQ 195
           V A P+VR  A+  G+N+  V+ +GK+GR+ KED+  Y     + +G +T+  S      
Sbjct: 127 VKAMPSVRKYARENGVNIKAVNGSGKNGRITKEDIDAYLNGGSSEEGSNTSVASESTSSD 186

Query: 196 LLGEEETYPQTFAEVKWYPDDKTVPL--RGFQRTMVKTMSMAAKIPHFHYVEEINCDALV 253
           ++    T  Q   E  +    + +P   +   + MV +   A   PH   ++EI+   L 
Sbjct: 187 VVNASAT--QALPEGDFPETTEKIPAMRKAIAKAMVNSKHTA---PHVTLMDEIDVQELW 241

Query: 254 KLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM 313
             +  F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ EV+ K   NIGIA 
Sbjct: 242 DHRKKFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEVVHKHYWNIGIAA 301

Query: 314 ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 373
            T  GL VP +K+    SI EI+ E++ L   A+D +L   +  G T T+SNIG+ GG++
Sbjct: 302 DTDKGLLVPVVKHADRKSIFEISDEINELAVKARDGKLTSEEMKGATCTISNIGSAGGQW 361

Query: 374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWK 433
             P++N PEVAI+ +GRI + P +  DG +  +P++ +++  DHR +DGAT     N  K
Sbjct: 362 FTPVINHPEVAILGIGRIAQKP-IVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIK 420

Query: 434 QLIENPELLLLQ 445
           +L+ NPELLL++
Sbjct: 421 RLLNNPELLLME 432

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8NX76|ODP2_STAAW Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=pdhC PE=3 SV=1

 Score =  243 bits (621), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 233/428 (54%), Gaps = 15/428 (3%)

Query: 28  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 87
           L   GEGI E E++KWFVK GD IEE   L  VQ+DK+ +EI S   G V +++   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVMVEEGTV 66

Query: 88  VKVGETLLKLVVGDSA--VPTPSSDVLESVKPPGSENSPDSKL-------NKDTVGGVLA 138
             VG+ ++K+   D+         D   S + P  E +P  +          D    V A
Sbjct: 67  AVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDENRTVKA 126

Query: 139 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 198
            P+VR  A+  G+N+  V  +GK+GR+ KEDV  Y +  GA    + ++ SA   E  + 
Sbjct: 127 MPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAY-LNGGAPTASNESAASATSEE--VA 183

Query: 199 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKA 257
           E    P        +P+  T  +   +R + K M  +    PH   ++EI+  AL   + 
Sbjct: 184 ETPAAPAAVTLEGDFPE-TTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQALWDHRK 242

Query: 258 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH 317
            F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ E++ K   NIGIA  T  
Sbjct: 243 KFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDR 302

Query: 318 GLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPL 377
           GL VP +K+    SI +I+ E++ L   A+D +L   +  G T T+SNIG+ GG++  P+
Sbjct: 303 GLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPV 362

Query: 378 LNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 437
           +N PEVAI+ +GRI + P +  DG +  +P++ +++  DHR +DGAT     N  K+L+ 
Sbjct: 363 INHPEVAILGIGRIAQKP-IVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLN 421

Query: 438 NPELLLLQ 445
           NPELLL++
Sbjct: 422 NPELLLME 429

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q6GAB9|ODP2_STAAS Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain MSSA476) GN=pdhC PE=3 SV=1

 Score =  243 bits (621), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 233/428 (54%), Gaps = 15/428 (3%)

Query: 28  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 87
           L   GEGI E E++KWFVK GD IEE   L  VQ+DK+ +EI S   G V +++   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVMVEEGTV 66

Query: 88  VKVGETLLKLVVGDSA--VPTPSSDVLESVKPPGSENSPDSKL-------NKDTVGGVLA 138
             VG+ ++K+   D+         D   S + P  E +P  +          D    V A
Sbjct: 67  AVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDENRTVKA 126

Query: 139 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 198
            P+VR  A+  G+N+  V  +GK+GR+ KEDV  Y +  GA    + ++ SA   E  + 
Sbjct: 127 MPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAY-LNGGAPTASNESAASATSEE--VA 183

Query: 199 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKA 257
           E    P        +P+  T  +   +R + K M  +    PH   ++EI+  AL   + 
Sbjct: 184 ETPAAPAAVTLEGDFPE-TTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQALWDHRK 242

Query: 258 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH 317
            F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ E++ K   NIGIA  T  
Sbjct: 243 KFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDR 302

Query: 318 GLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPL 377
           GL VP +K+    SI +I+ E++ L   A+D +L   +  G T T+SNIG+ GG++  P+
Sbjct: 303 GLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPV 362

Query: 378 LNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 437
           +N PEVAI+ +GRI + P +  DG +  +P++ +++  DHR +DGAT     N  K+L+ 
Sbjct: 363 INHPEVAILGIGRIAQKP-IVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLN 421

Query: 438 NPELLLLQ 445
           NPELLL++
Sbjct: 422 NPELLLME 429

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q5HGY9|ODP2_STAAC Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Staphylococcus aureus (strain COL) GN=pdhC PE=3 SV=1

 Score =  243 bits (621), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/428 (35%), Positives = 233/428 (54%), Gaps = 15/428 (3%)

Query: 28  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 87
           L   GEGI E E++KWFVK GD IEE   L  VQ+DK+ +EI S   G V +++   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVMVEEGTV 66

Query: 88  VKVGETLLKLVVGDSA--VPTPSSDVLESVKPPGSENSPDSKL-------NKDTVGGVLA 138
             VG+ ++K+   D+         D   S + P  E +P  +          D    V A
Sbjct: 67  AVVGDVIVKIDAPDAEDMQFKGHDDDSSSKEEPAKEEAPAEQAPVATQTEEVDENRTVKA 126

Query: 139 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLG 198
            P+VR  A+  G+N+  V  +GK+GR+ KEDV  Y +  GA    + ++ SA   E  + 
Sbjct: 127 MPSVRKYAREKGVNIKAVSGSGKNGRITKEDVDAY-LNGGAPTASNESAASATSEE--VA 183

Query: 199 EEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKA 257
           E    P        +P+  T  +   +R + K M  +    PH   ++EI+  AL   + 
Sbjct: 184 ETPAAPAAVTLEGDFPE-TTEKIPAMRRAIAKAMVNSKHTAPHVTLMDEIDVQALWDHRK 242

Query: 258 SFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH 317
            F+   ++   K TFLP ++K+L  A+ KYP +N+ FNEE+ E++ K   NIGIA  T  
Sbjct: 243 KFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEIVHKHYWNIGIAADTDR 302

Query: 318 GLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPL 377
           GL VP +K+    SI +I+ E++ L   A+D +L   +  G T T+SNIG+ GG++  P+
Sbjct: 303 GLLVPVVKHADRKSIFQISDEINELAVKARDGKLTADEMKGATCTISNIGSAGGQWFTPV 362

Query: 378 LNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 437
           +N PEVAI+ +GRI + P +  DG +  +P++ +++  DHR +DGAT     N  K+L+ 
Sbjct: 363 INHPEVAILGIGRIAQKP-IVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIKRLLN 421

Query: 438 NPELLLLQ 445
           NPELLL++
Sbjct: 422 NPELLLME 429

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Staphylococcus aureus (strain COL) (taxid: 93062)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
255551811	504	lipoamide acyltransferase component of b	0.973	0.863	0.724	0.0
224110406	490	predicted protein [Populus trichocarpa]	0.968	0.883	0.719	1e-176
296083342	463	unnamed protein product [Vitis vinifera]	0.993	0.958	0.678	1e-176
359477250	506	PREDICTED: lipoamide acyltransferase com	0.975	0.861	0.677	1e-174
147792119	527	hypothetical protein VITISV_019281 [Viti	0.975	0.827	0.662	1e-170
449432874	517	PREDICTED: lipoamide acyltransferase com	0.975	0.843	0.688	1e-170
449515343	517	PREDICTED: LOW QUALITY PROTEIN: lipoamid	0.975	0.843	0.688	1e-170
356521841	515	PREDICTED: lipoamide acyltransferase com	0.977	0.848	0.652	1e-168
356564223	515	PREDICTED: lipoamide acyltransferase com	0.986	0.856	0.647	1e-167
227206290	455	AT3G06850 [Arabidopsis thaliana]	0.953	0.936	0.658	1e-166

>gi|255551811|ref|XP_002516951.1| lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative [Ricinus communis] gi|223544039|gb|EEF45565.1| lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative [Ricinus communis]

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/443 (72%), Positives = 373/443 (84%), Gaps = 8/443 (1%)

Query: 6   SRCCYSNHALADLP-ASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDK 64
           +RC +++HALAD+P   G+VDVPLAQTGEGIAECELL+WFV+EGDE+EEFQPLC VQSDK
Sbjct: 69  NRCWFTSHALADVPIGGGVVDVPLAQTGEGIAECELLQWFVQEGDEVEEFQPLCEVQSDK 128

Query: 65  ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSP 124
           ATIEITSRYKGKVAQ+L+ PG+IVKVGETLLK+ V +S    P  D L+  K      + 
Sbjct: 129 ATIEITSRYKGKVAQILYVPGDIVKVGETLLKMAVEESLASIPRVDGLKDTK------AL 182

Query: 125 DSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPS 184
           D +  K  +GGVL TP VR+LAK YGI+L DV  TGKDG++LKED+L Y +QKG  +   
Sbjct: 183 DLEQEKSQIGGVLCTPAVRHLAKQYGIDLNDVSGTGKDGKILKEDILNYGIQKGVIEDSP 242

Query: 185 TASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYV 244
            AS +AD   QL   +E    T AEV    DDKTVPLRGFQRTMVKTMS+AAK+PHFHYV
Sbjct: 243 GAS-NADSGNQLKKGKEKSTCTSAEVGQLYDDKTVPLRGFQRTMVKTMSIAAKVPHFHYV 301

Query: 245 EEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 304
           EEINC+ALV+LKASFQ+NN+DP IKHTFLP LIKSLSMA+SKYP+MNSCFNEE++EV+LK
Sbjct: 302 EEINCNALVELKASFQSNNTDPGIKHTFLPLLIKSLSMALSKYPWMNSCFNEEAIEVLLK 361

Query: 305 GSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLS 364
           GSHNIGIAMAT HGL VPNIKNVQSLSILEITKEL+RLQQLA DN+LNP D +GGTI+LS
Sbjct: 362 GSHNIGIAMATPHGLVVPNIKNVQSLSILEITKELARLQQLALDNKLNPEDITGGTISLS 421

Query: 365 NIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGAT 424
           NIGAIGGKFGAP++NLPEVAIIA+GRI+KVP+ +DDGNVYP+ IMTVNIGADHRVLDGAT
Sbjct: 422 NIGAIGGKFGAPIINLPEVAIIAIGRIQKVPQFADDGNVYPASIMTVNIGADHRVLDGAT 481

Query: 425 VAKFCNEWKQLIENPELLLLQMR 447
           VA+FCNEWKQLIE PELL+L +R
Sbjct: 482 VARFCNEWKQLIEKPELLMLVLR 504

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110406|ref|XP_002315510.1| predicted protein [Populus trichocarpa] gi|222864550|gb|EEF01681.1| predicted protein [Populus trichocarpa]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 316/439 (71%), Positives = 361/439 (82%), Gaps = 6/439 (1%)

Query: 10  YSNHALADLPASG-IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIE 68
           +S+ ALAD   S  IVDVPLAQTGEGIAECELLKWFVKEGDE+E+FQPLC VQSDKATIE
Sbjct: 57  FSSQALADGGMSDRIVDVPLAQTGEGIAECELLKWFVKEGDEVEDFQPLCEVQSDKATIE 116

Query: 69  ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKL 128
           ITSRYKGKVAQ  + PG+IVKVGETLLK+VV  + VP    DV E++    SE     ++
Sbjct: 117 ITSRYKGKVAQFQYVPGDIVKVGETLLKMVVEGAQVPPQKHDVTENIISHCSE----GEV 172

Query: 129 NKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASV 188
           NK    GVL+TP VR+L K Y INL DV  +GKDGRVLKED++K+A+QKG     S+   
Sbjct: 173 NKSKTCGVLSTPAVRHLGKQYDINLNDVHGSGKDGRVLKEDIIKHAIQKGIIKD-SSGFE 231

Query: 189 SADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEIN 248
           +AD  +Q L  EE Y    AE+  +  DKT+PLRGFQRTMVKTMSMAAK+PHFHYVEEIN
Sbjct: 232 NADSGDQFLRGEEDYSYVPAELGSHHGDKTIPLRGFQRTMVKTMSMAAKVPHFHYVEEIN 291

Query: 249 CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHN 308
           CDALV+LK SFQNNN++P +KHTFLPSLIKSLS+A+SKYP++NS FNE+S+EVILKGSHN
Sbjct: 292 CDALVELKESFQNNNTEPGVKHTFLPSLIKSLSVAISKYPWINSRFNEDSMEVILKGSHN 351

Query: 309 IGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGA 368
           IGIAMAT  GL VPNIKNVQSLSILEITKELSRLQQLA  N+LNP D +GGTITLSNIGA
Sbjct: 352 IGIAMATPSGLVVPNIKNVQSLSILEITKELSRLQQLALANKLNPEDITGGTITLSNIGA 411

Query: 369 IGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKF 428
           IGGKFGAP+LNLPEVAIIA+GRI+KV   +DDGN YP  +MTVNIGADHRVLDGATVA+F
Sbjct: 412 IGGKFGAPILNLPEVAIIAIGRIQKVAHFADDGNAYPVSVMTVNIGADHRVLDGATVARF 471

Query: 429 CNEWKQLIENPELLLLQMR 447
           CNEWKQLIE PELL+L MR
Sbjct: 472 CNEWKQLIEKPELLMLLMR 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083342|emb|CBI22978.3| unnamed protein product [Vitis vinifera]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 306/451 (67%), Positives = 361/451 (80%), Gaps = 7/451 (1%)

Query: 1   MPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAV 60
           +P  + R C+S+HAL DLPASGIV +PLAQTGEGIAECELLKWFVKEGD++EEFQPLC V
Sbjct: 16  IPYSIKRSCFSSHALLDLPASGIVSIPLAQTGEGIAECELLKWFVKEGDQVEEFQPLCEV 75

Query: 61  QSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGS 120
           QSDKATIEITSRYKG V+Q+++ PG+IVKVGE+LLK+VV +S     +S+  + +K  G+
Sbjct: 76  QSDKATIEITSRYKGTVSQIIYVPGDIVKVGESLLKMVVEESQGSNLTSNAPDDMKSMGA 135

Query: 121 E----NSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 176
           E    +   S L     GGVLATP VRNLAK YG+++  +  TG+DGRVLKEDVL +AVQ
Sbjct: 136 EVCDSSIQSSDLRHSNTGGVLATPAVRNLAKQYGVDINHILGTGQDGRVLKEDVLTHAVQ 195

Query: 177 KGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA 236
           KG    PS+ SV++   E   GEE+ Y  T A   W  +DKTVP+RGFQR M+K+M++AA
Sbjct: 196 KGLCKEPSSLSVNS--VEHFQGEEK-YSHTLAADGWQYEDKTVPIRGFQRAMIKSMTLAA 252

Query: 237 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNE 296
           KIPHFHYVEEINCDALVKLKASFQ  N DP +KHTFLP +IK+LSMA+SKYP +NSCFNE
Sbjct: 253 KIPHFHYVEEINCDALVKLKASFQEENRDPEVKHTFLPFMIKTLSMALSKYPLLNSCFNE 312

Query: 297 ESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADN 356
           E  E+ +KGSHNIGIAMAT HGL VPNIK VQ LSILEITKEL+RLQQLA  N L P D 
Sbjct: 313 ELQEITVKGSHNIGIAMATPHGLVVPNIKRVQLLSILEITKELARLQQLALANNLCPEDI 372

Query: 357 SGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGAD 416
           SGGTITLSNIGAIGGKFG+PLLN PEV+IIA+GR++KVP+  DD NVYP+ IMTVNIGAD
Sbjct: 373 SGGTITLSNIGAIGGKFGSPLLNSPEVSIIAIGRLQKVPQFVDDENVYPASIMTVNIGAD 432

Query: 417 HRVLDGATVAKFCNEWKQLIENPELLLLQMR 447
           HRVLDGATVA+FCNEWK  IE PE L+L M+
Sbjct: 433 HRVLDGATVARFCNEWKLYIEKPEQLMLHMK 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477250|ref|XP_002270598.2| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Vitis vinifera]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 303/447 (67%), Positives = 356/447 (79%), Gaps = 11/447 (2%)

Query: 1   MPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAV 60
           +P  + R C+S+HAL DLPASGIV +PLAQTGEGIAECELLKWFVKEGD++EEFQPLC V
Sbjct: 71  IPYSIKRSCFSSHALLDLPASGIVSIPLAQTGEGIAECELLKWFVKEGDQVEEFQPLCEV 130

Query: 61  QSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGS 120
           QSDKATIEITSRYKG V+Q+++ PG+IVKVGE+LLK+VV +S     +S+  + +K    
Sbjct: 131 QSDKATIEITSRYKGTVSQIIYVPGDIVKVGESLLKMVVEESQGSNLTSNAPDDMK---- 186

Query: 121 ENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA 180
                  L     GGVLATP VRNLAK YG+++  +  TG+DGRVLKEDVL +AVQKG  
Sbjct: 187 ----SMDLRHSNTGGVLATPAVRNLAKQYGVDINHILGTGQDGRVLKEDVLTHAVQKGLC 242

Query: 181 DGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPH 240
             PS+ SV++   E   GEE+ Y  T A   W  +DKTVP+RGFQR M+K+M++AAKIPH
Sbjct: 243 KEPSSLSVNS--VEHFQGEEK-YSHTLAADGWQYEDKTVPIRGFQRAMIKSMTLAAKIPH 299

Query: 241 FHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLE 300
           FHYVEEINCDALVKLKASFQ  N DP +KHTFLP +IK+LSMA+SKYP +NSCFNEE  E
Sbjct: 300 FHYVEEINCDALVKLKASFQEENRDPEVKHTFLPFMIKTLSMALSKYPLLNSCFNEELQE 359

Query: 301 VILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGT 360
           + +KGSHNIGIAMAT HGL VPNIK VQ LSILEITKEL+RLQQLA  N L P D SGGT
Sbjct: 360 ITVKGSHNIGIAMATPHGLVVPNIKRVQLLSILEITKELARLQQLALANNLCPEDISGGT 419

Query: 361 ITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVL 420
           ITLSNIGAIGGKFG+PLLN PEV+IIA+GR++KVP+  DD NVYP+ IMTVNIGADHRVL
Sbjct: 420 ITLSNIGAIGGKFGSPLLNSPEVSIIAIGRLQKVPQFVDDENVYPASIMTVNIGADHRVL 479

Query: 421 DGATVAKFCNEWKQLIENPELLLLQMR 447
           DGATVA+FCNEWK  IE PE L+L M+
Sbjct: 480 DGATVARFCNEWKLYIEKPEQLMLHMK 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147792119|emb|CAN68576.1| hypothetical protein VITISV_019281 [Vitis vinifera]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 299/451 (66%), Positives = 354/451 (78%), Gaps = 15/451 (3%)

Query: 1   MPSMVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAV 60
           +P  + R C+S+HAL DLPASGIV +PLAQTGEGIAECELLKWFVKEGD++EEFQPLC V
Sbjct: 88  IPYSIKRSCFSSHALLDLPASGIVSIPLAQTGEGIAECELLKWFVKEGDQVEEFQPLCEV 147

Query: 61  QSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGS 120
           QSDKATIEITSRYKG V+Q+++ PG+IVKVGE+LLK+VV +S     +S+  + +K  G+
Sbjct: 148 QSDKATIEITSRYKGTVSQIIYVPGDIVKVGESLLKMVVEESQGSNLTSNAPDDMKSMGA 207

Query: 121 E----NSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 176
           E    +   S L     GGVLATP VRNLAK YG+++  +  TG+DGRVLKEDVL +AVQ
Sbjct: 208 EVCDSSIQSSDLRXSNTGGVLATPAVRNLAKQYGVDINHILGTGQDGRVLKEDVLTHAVQ 267

Query: 177 KGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA 236
           KG    PS+ SV++   E   GEE+ Y  T A   W  +DKTVP+RGFQR M+K+M++AA
Sbjct: 268 KGLCKEPSSLSVNS--VEHFQGEEK-YSHTLAADGWQYEDKTVPIRGFQRAMIKSMTLAA 324

Query: 237 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNE 296
           KIPHFHYVEEINCDALVKLKASFQ  N DP +KHTFLP +IK+LSMA+SKYP +NSCFNE
Sbjct: 325 KIPHFHYVEEINCDALVKLKASFQEENRDPEVKHTFLPFMIKTLSMALSKYPLLNSCFNE 384

Query: 297 ESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADN 356
           E  E+ +KGSHNIGIAMAT HGL VPNIK         ITKEL+RLQQLA  N L P D 
Sbjct: 385 ELQEITVKGSHNIGIAMATPHGLVVPNIK--------RITKELARLQQLALANNLCPEDI 436

Query: 357 SGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGAD 416
           SGGTITLSNIGAIGGKFG+PLLN PEV+IIA+GR++KVP+  DD NVYP+ IMTVNIGAD
Sbjct: 437 SGGTITLSNIGAIGGKFGSPLLNSPEVSIIAIGRLQKVPQFVDDENVYPASIMTVNIGAD 496

Query: 417 HRVLDGATVAKFCNEWKQLIENPELLLLQMR 447
           HRVLDGATVA+FCNEWK  IE PE L+L M+
Sbjct: 497 HRVLDGATVARFCNEWKLYIEKPEQLMLXMK 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432874|ref|XP_004134223.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Cucumis sativus]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 307/446 (68%), Positives = 357/446 (80%), Gaps = 10/446 (2%)

Query: 5   VSRCC-YSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD 63
           VS+ C +S+ AL  LP   +VD+PLAQTGEGIAECELLKWFV+EGDE+EEFQPLC VQSD
Sbjct: 79  VSKICRFSSQALDGLPLFRLVDIPLAQTGEGIAECELLKWFVQEGDEVEEFQPLCEVQSD 138

Query: 64  KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLES--VKPPGSE 121
           KATIEITSRYKGKV QLL+ PG+IVKVGETLLK+ V         S + E    KP   E
Sbjct: 139 KATIEITSRYKGKVGQLLYVPGDIVKVGETLLKVHVEGFEDEIQVSGLTEGHLAKPEVKE 198

Query: 122 NSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAAD 181
           +  D   N     GVL+TP VR+LAK YGI++ DV  +G DGRVLKEDVL+YAV+KG  +
Sbjct: 199 SQQDKSKN----CGVLSTPPVRDLAKEYGIDINDVSGSGPDGRVLKEDVLQYAVKKGILE 254

Query: 182 GPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHF 241
                S +A  R Q   E ET+      V W  +DK V LRGFQR MVK+M++AAK+PHF
Sbjct: 255 --DHVSSAASFRVQF-DESETHTHAPDGVMWTYEDKKVQLRGFQRAMVKSMAIAAKVPHF 311

Query: 242 HYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEV 301
           HYVEEINCDAL++LKASFQ N ++PN+KHT LP LIKSLSMAMSKYP +NSCFNE+S EV
Sbjct: 312 HYVEEINCDALLELKASFQGNTTEPNVKHTSLPLLIKSLSMAMSKYPMLNSCFNEDSFEV 371

Query: 302 ILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTI 361
            LKGSHNIGIAMAT HGL VPNIKNVQSLS+LEITKELSRLQ LA +N+L+P D SGGTI
Sbjct: 372 TLKGSHNIGIAMATPHGLVVPNIKNVQSLSVLEITKELSRLQLLAMENKLSPGDISGGTI 431

Query: 362 TLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD 421
           TLSNIGAIGGK+G+PLLNLPEV+IIA+GRI+KVP+++DDG+VYPS IMTVNIGADHRVLD
Sbjct: 432 TLSNIGAIGGKYGSPLLNLPEVSIIAIGRIKKVPQIADDGSVYPSSIMTVNIGADHRVLD 491

Query: 422 GATVAKFCNEWKQLIENPELLLLQMR 447
           GATVA+FCNEWK+ IENPELL+L MR
Sbjct: 492 GATVARFCNEWKRFIENPELLILHMR 517

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515343|ref|XP_004164709.1| PREDICTED: LOW QUALITY PROTEIN: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Cucumis sativus]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 307/446 (68%), Positives = 356/446 (79%), Gaps = 10/446 (2%)

Query: 5   VSRCC-YSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD 63
           VS+ C +S+ AL  LP   +VD+PLAQTGEGIAECELLKWFV+EGDE+EEFQPLC VQSD
Sbjct: 79  VSKICRFSSQALDGLPLFRLVDIPLAQTGEGIAECELLKWFVQEGDEVEEFQPLCEVQSD 138

Query: 64  KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLES--VKPPGSE 121
           KATIEITSRYKGKV QLL+ PG+IVKVGETLLK+ V         S + E    KP   E
Sbjct: 139 KATIEITSRYKGKVGQLLYVPGDIVKVGETLLKVHVEGFEDEIQVSGLTEGHLAKPEVKE 198

Query: 122 NSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAAD 181
           +  D   N     GVL+TP VR+LAK YGI++ DV  +G DGRVLKEDVL+YAV+KG  +
Sbjct: 199 SQQDKSKN----CGVLSTPPVRDLAKEYGIDINDVSGSGPDGRVLKEDVLQYAVKKGILE 254

Query: 182 GPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHF 241
                S +A  R Q   E ET+      V W  +DK V LRGFQR MVK+M++AAK+PHF
Sbjct: 255 --DHVSSAASFRVQF-DESETHTHAPDGVMWTYEDKKVQLRGFQRAMVKSMAIAAKVPHF 311

Query: 242 HYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEV 301
           HYVEEINCDAL++LKASFQ N ++PN+KHT LP LIKSLSMAMSKYP +NSCFNE+S EV
Sbjct: 312 HYVEEINCDALLELKASFQGNTTEPNVKHTSLPLLIKSLSMAMSKYPMLNSCFNEDSFEV 371

Query: 302 ILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTI 361
            LKGSHNIGIAMAT HGL VPNIKNVQSLS+LEITKELSRLQ LA +N+L+P D SGGTI
Sbjct: 372 TLKGSHNIGIAMATPHGLVVPNIKNVQSLSVLEITKELSRLQLLAMENKLSPGDISGGTI 431

Query: 362 TLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD 421
           TLSNIGAIGGK+G+PLLNLPEV+IIA+GRI KVP+++DDG+VYPS IMTVNIGADHRVLD
Sbjct: 432 TLSNIGAIGGKYGSPLLNLPEVSIIAIGRIXKVPQIADDGSVYPSSIMTVNIGADHRVLD 491

Query: 422 GATVAKFCNEWKQLIENPELLLLQMR 447
           GATVA+FCNEWK+ IENPELL+L MR
Sbjct: 492 GATVARFCNEWKRFIENPELLILHMR 517

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521841|ref|XP_003529559.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Glycine max]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/457 (65%), Positives = 361/457 (78%), Gaps = 20/457 (4%)

Query: 10  YSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEI 69
           +S     +LPAS IVDVPLAQTGEGIAECELLKW+V+EGD +E+FQPLC VQSDKATIEI
Sbjct: 60  FSTQPALELPASKIVDVPLAQTGEGIAECELLKWYVQEGDYVEDFQPLCEVQSDKATIEI 119

Query: 70  TSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPT-----------PSSD---VLESV 115
           TSRYKGK++  L+ PG+IVKVGETLLK++V +SA P+           P SD   V ESV
Sbjct: 120 TSRYKGKISSFLYVPGDIVKVGETLLKILVDESAFPSGTPCDSENAKSPDSDQTLVNESV 179

Query: 116 KPPGSENSPDSKL-----NKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV 170
                ++S ++KL      K    GVL+TP +R+LAK +GI++ +V  TGKDGRVLKEDV
Sbjct: 180 LTTVVDDSDNAKLIDSDPGKGRQTGVLSTPAIRSLAKQHGIDITEVCGTGKDGRVLKEDV 239

Query: 171 LKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVK 230
           L +AV+KG    PST  + +D  EQL G E        +     +D+T+PLRGFQR MVK
Sbjct: 240 LNFAVKKGIIKNPSTV-LHSDSGEQLQGAEGYNCNVATKFYRSSEDRTLPLRGFQRAMVK 298

Query: 231 TMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFM 290
           +MS+AAK+PHFHYV+EINCDALV+LK SFQ NN  P++K+TFLP LIKSLSMA+SKYPFM
Sbjct: 299 SMSLAAKVPHFHYVDEINCDALVELKTSFQKNNPYPDVKYTFLPILIKSLSMALSKYPFM 358

Query: 291 NSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNE 350
           NSCF E++LEV+LKGSHN+GIAMAT HGL VPNIKNVQSLSI+EITK+L+RLQQLA DN+
Sbjct: 359 NSCFKEDALEVVLKGSHNVGIAMATPHGLVVPNIKNVQSLSIMEITKDLARLQQLASDNK 418

Query: 351 LNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMT 410
           L   +  GGTITLSNIGAIGGKFG+PL+NLPEV+IIA+GRI+ VPR +D+GNVYP+ +M 
Sbjct: 419 LTSEEIYGGTITLSNIGAIGGKFGSPLINLPEVSIIAIGRIQIVPRFADNGNVYPASLMN 478

Query: 411 VNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR 447
           VNIGADHRVLDGATVA+FCNEWKQLIENPELL L ++
Sbjct: 479 VNIGADHRVLDGATVARFCNEWKQLIENPELLTLHLK 515

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564223|ref|XP_003550355.1| PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like [Glycine max]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 300/463 (64%), Positives = 365/463 (78%), Gaps = 22/463 (4%)

Query: 5   VSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDK 64
           V R  +S     +LPAS IVDVPLAQTGEGIAECELLKW+V+EGD +E+FQPLC VQSDK
Sbjct: 55  VDRYWFSTQPALELPASKIVDVPLAQTGEGIAECELLKWYVQEGDYVEDFQPLCEVQSDK 114

Query: 65  ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPT-----------PSSD--- 110
           ATIEITSRYKGK++ +L+ PG+IVKVGETLLK++V +S  P+           P +D   
Sbjct: 115 ATIEITSRYKGKISNILYVPGDIVKVGETLLKILVDESTFPSGIPCDSENAKSPDTDQTL 174

Query: 111 VLESVKPPGSENSPDSKL-----NKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRV 165
           V ESV     ++S + KL      K    GV +TP VR+LAK +GI++ ++  TGKDGR+
Sbjct: 175 VNESVFTTVIDDSDNGKLIDSDPGKGRQTGVSSTPAVRSLAKQHGIDITEICGTGKDGRI 234

Query: 166 LKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYP-DDKTVPLRGF 224
           LKEDVL ++V+KG    PST  + +D  EQL G E  Y    A   + P +D+T+PLRGF
Sbjct: 235 LKEDVLNFSVKKGIIKNPSTV-LQSDSGEQLQGAE-GYNCNVATKSYRPSEDRTLPLRGF 292

Query: 225 QRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAM 284
           QR MVK+MS+AAK+PHFHYV+EINCDALV+LK SFQ NN  P++K+TFLP LIKSLSMA+
Sbjct: 293 QRAMVKSMSLAAKVPHFHYVDEINCDALVELKTSFQKNNPYPDVKYTFLPILIKSLSMAL 352

Query: 285 SKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQ 344
           SKYPFMNSCF E++LEVILKGSHN+GIAMAT HGL VPNIKNVQSLSI+EITKEL+RLQQ
Sbjct: 353 SKYPFMNSCFKEDALEVILKGSHNVGIAMATSHGLVVPNIKNVQSLSIMEITKELARLQQ 412

Query: 345 LAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY 404
           LA +N+L   D  GGTITLSNIGAIGGKFG+PL+NLPEV+IIA+GRI+KVPR +D+GNVY
Sbjct: 413 LASNNKLTSEDICGGTITLSNIGAIGGKFGSPLINLPEVSIIAVGRIQKVPRFADNGNVY 472

Query: 405 PSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR 447
           P+ ++ VNIGADHRVLDGATVA+FCNEWKQLIENPELL L ++
Sbjct: 473 PASLVNVNIGADHRVLDGATVARFCNEWKQLIENPELLTLHLK 515

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227206290|dbj|BAH57200.1| AT3G06850 [Arabidopsis thaliana]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 291/442 (65%), Positives = 351/442 (79%), Gaps = 16/442 (3%)

Query: 6   SRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKA 65
           SR  +SN A+A    SG++DVPLAQTGEGIAECELLKWFVKEGD +EEFQPLC VQSDKA
Sbjct: 30  SRSWFSNEAMATDSNSGLIDVPLAQTGEGIAECELLKWFVKEGDSVEEFQPLCEVQSDKA 89

Query: 66  TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPD 125
           TIEITSR+KGKVA + H+PG+I+KVGETL++L V DS     ++D  E V   GS+   +
Sbjct: 90  TIEITSRFKGKVALISHSPGDIIKVGETLVRLAVEDSQDSLLTTDSSEIVTLGGSKQGTE 149

Query: 126 SKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPST 185
           + L      G L+TP VRNLAK  GI++  +  TGKDGRVLKEDVL+++ QKG      T
Sbjct: 150 NLL------GALSTPAVRNLAKDLGIDINVITGTGKDGRVLKEDVLRFSDQKGFV----T 199

Query: 186 ASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVE 245
            SVS++    ++G +    +  +      +DKTVPLRGF R MVKTM+MA  +PHFH+VE
Sbjct: 200 DSVSSE--HAVIGGDSVSTKASSNF----EDKTVPLRGFSRAMVKTMTMATSVPHFHFVE 253

Query: 246 EINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 305
           EINCD+LV+LK  F+ NN+D  IKHTFLP+LIKSLSMA++KYPF+NSCFN ESLE+ILKG
Sbjct: 254 EINCDSLVELKQFFKENNTDSTIKHTFLPTLIKSLSMALTKYPFVNSCFNAESLEIILKG 313

Query: 306 SHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSN 365
           SHNIG+AMAT+HGL VPNIKNVQSLS+LEITKELSRLQ LA +N+LNP D +GGTITLSN
Sbjct: 314 SHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAANNKLNPEDVTGGTITLSN 373

Query: 366 IGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATV 425
           IGAIGGKFG+PLLNLPEVAIIA+GRIEKVP+ S +G VYP+ IM VNI ADHRVLDGATV
Sbjct: 374 IGAIGGKFGSPLLNLPEVAIIALGRIEKVPKFSKEGTVYPASIMMVNIAADHRVLDGATV 433

Query: 426 AKFCNEWKQLIENPELLLLQMR 447
           A+FC +WK+ +E PELL+LQMR
Sbjct: 434 ARFCCQWKEYVEKPELLMLQMR 455

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
TAIR|locus:2083358	483	BCE2 "AT3G06850" [Arabidopsis	0.953	0.881	0.662	6.2e-149
MGI|MGI:105386	482	Dbt "dihydrolipoamide branched	0.930	0.863	0.425	8.2e-83
UNIPROTKB|P11182	482	DBT "Lipoamide acyltransferase	0.935	0.867	0.417	2.2e-82
DICTYBASE|DDB_G0281797	517	bkdC "dihydrolipoyl transacyla	0.935	0.808	0.413	5.8e-82
WB|WBGene00014054	448	ZK669.4 [Caenorhabditis elegan	0.932	0.930	0.428	7.4e-82
UNIPROTKB|F1S563	482	DBT "Uncharacterized protein"	0.930	0.863	0.413	3.2e-81
UNIPROTKB|E2RQG4	482	DBT "Uncharacterized protein"	0.961	0.892	0.414	4.1e-81
UNIPROTKB|F1P1X9	493	DBT "Uncharacterized protein"	0.941	0.853	0.417	6.6e-81
ZFIN|ZDB-GENE-050320-85	493	dbt "dihydrolipoamide branched	0.948	0.860	0.401	1.1e-80
UNIPROTKB|P11181	482	DBT "Lipoamide acyltransferase	0.928	0.860	0.417	9.7e-80

TAIR|locus:2083358 BCE2 "AT3G06850" [Arabidopsis thaliana (taxid:3702)]

 Score = 1454 (516.9 bits), Expect = 6.2e-149, P = 6.2e-149
 Identities = 293/442 (66%), Positives = 352/442 (79%)

Query:     6 SRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKA 65
             SR  +SN A+A    SG++DVPLAQTGEGIAECELLKWFVKEGD +EEFQPLC VQSDKA
Sbjct:    58 SRSWFSNEAMATDSNSGLIDVPLAQTGEGIAECELLKWFVKEGDSVEEFQPLCEVQSDKA 117

Query:    66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPD 125
             TIEITSR+KGKVA + H+PG+I+KVGETL++L V DS     ++D  E V   GS+   +
Sbjct:   118 TIEITSRFKGKVALISHSPGDIIKVGETLVRLAVEDSQDSLLTTDSSEIVTLGGSKQGTE 177

Query:   126 SKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPST 185
             + L      G L+TP VRNLAK  GI++  +  TGKDGRVLKEDVL+++ QKG      T
Sbjct:   178 NLL------GALSTPAVRNLAKDLGIDINVITGTGKDGRVLKEDVLRFSDQKGFV----T 227

Query:   186 ASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVE 245
              SVS++    ++G +     T A   +  +DKTVPLRGF R MVKTM+MA  +PHFH+VE
Sbjct:   228 DSVSSE--HAVIGGDSV--STKASSNF--EDKTVPLRGFSRAMVKTMTMATSVPHFHFVE 281

Query:   246 EINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 305
             EINCD+LV+LK  F+ NN+D  IKHTFLP+LIKSLSMA++KYPF+NSCFN ESLE+ILKG
Sbjct:   282 EINCDSLVELKQFFKENNTDSTIKHTFLPTLIKSLSMALTKYPFVNSCFNAESLEIILKG 341

Query:   306 SHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSN 365
             SHNIG+AMAT+HGL VPNIKNVQSLS+LEITKELSRLQ LA +N+LNP D +GGTITLSN
Sbjct:   342 SHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAANNKLNPEDVTGGTITLSN 401

Query:   366 IGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATV 425
             IGAIGGKFG+PLLNLPEVAIIA+GRIEKVP+ S +G VYP+ IM VNI ADHRVLDGATV
Sbjct:   402 IGAIGGKFGSPLLNLPEVAIIALGRIEKVPKFSKEGTVYPASIMMVNIAADHRVLDGATV 461

Query:   426 AKFCNEWKQLIENPELLLLQMR 447
             A+FC +WK+ +E PELL+LQMR
Sbjct:   462 ARFCCQWKEYVEKPELLMLQMR 483

GO:0003826 "alpha-ketoacid dehydrogenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0016407 "acetyltransferase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0004147 "dihydrolipoamide branched chain acyltransferase activity" evidence=TAS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

MGI|MGI:105386 Dbt "dihydrolipoamide branched chain transacylase E2" [Mus musculus (taxid:10090)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 182/428 (42%), Positives = 259/428 (60%)

Query:    23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
             +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct:    64 VVQFKLSDIGEGIREVTIKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKRLYY 123

Query:    83 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGG-VLATPT 141
                +I  VG+ L+ +     A+     DV+E+   P    S D   +++  G   LATP 
Sbjct:   124 NLDDIAYVGKPLIDIET--EALKDSEEDVVET---PAV--SHDEHTHQEIKGQKTLATPA 176

Query:   142 VRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV-QKGAADGPSTASVSADCREQLLGEE 200
             VR LA    I L +V  +GKDGR+LKED+L +   Q GA   PS  S       Q   ++
Sbjct:   177 VRRLAMENNIKLSEVVGSGKDGRILKEDILSFLEKQTGAILPPSPKSEITPPPPQ--PKD 234

Query:   201 ETYPQTFAEVKWYPD-DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASF 259
              T+P   A+   +   D+T P+ GFQ+ MVKTMS A KIPHF Y +EI+   LVKL+   
Sbjct:   235 RTFPTPIAKPPVFTGKDRTEPVTGFQKAMVKTMSAALKIPHFGYCDEIDLTQLVKLREEL 294

Query:   260 QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGL 319
             +       IK +F+P  +K+ S+ + ++P +N+  +E    +  K SHNIGIAM T+ GL
Sbjct:   295 KPVALARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTELGL 354

Query:   320 AVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLN 379
              VPN+KNVQ  S+ EI  EL+RLQ+L    +L   D +GGT TLSNIG+IGG +  P++ 
Sbjct:   355 IVPNVKNVQVRSVFEIAMELNRLQKLGSSGQLGTTDLTGGTFTLSNIGSIGGTYAKPVIL 414

Query:   380 LPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENP 439
              PEVAI A+G I+ +PR    G+VY + IM V+  ADHRV+DGAT+++F N WK  +ENP
Sbjct:   415 PPEVAIGALGAIKALPRFDQKGDVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLENP 474

Query:   440 ELLLLQMR 447
               +LL ++
Sbjct:   475 AFMLLDLK 482

GO:0005739 "mitochondrion" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

UNIPROTKB|P11182 DBT "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 178/426 (41%), Positives = 257/426 (60%)

Query:    23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
             +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct:    64 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 123

Query:    83 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 142
                +I  VG+ L+ +     A+     DV+E+      E++      + T    LATP V
Sbjct:   124 NLDDIAYVGKPLVDIET--EALKDSEEDVVETPAVSHDEHTHQEIKGRKT----LATPAV 177

Query:   143 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEET 202
             R LA    I L +V  +GKDGR+LKED+L Y  ++  A  P +  V          ++ T
Sbjct:   178 RRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSPKVEI-MPPPPKPKDMT 236

Query:   203 YPQTFAEVKWYPD-DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQN 261
              P   ++   +   DKT P++GFQ+ MVKTMS A KIPHF Y +EI+   LVKL+   + 
Sbjct:   237 VPILVSKPPVFTGKDKTEPIKGFQKAMVKTMSAALKIPHFGYCDEIDLTELVKLREELKP 296

Query:   262 NNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAV 321
                   IK +F+P  +K+ S+ + ++P +N+  +E    +  K SHNIGIAM T+ GL V
Sbjct:   297 IAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIV 356

Query:   322 PNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLP 381
             PN+KNVQ  SI +I  EL+RLQ+L    +L+  D +GGT TLSNIG+IGG F  P++  P
Sbjct:   357 PNVKNVQICSIFDIATELNRLQKLGSVGQLSTTDLTGGTFTLSNIGSIGGTFAKPVIMPP 416

Query:   382 EVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPEL 441
             EVAI A+G I+ +PR +  G VY + IM V+  ADHRV+DGAT+++F N WK  +ENP  
Sbjct:   417 EVAIGALGSIKAIPRFNQKGEVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLENPAF 476

Query:   442 LLLQMR 447
             +LL ++
Sbjct:   477 MLLDLK 482

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0005947 "mitochondrial alpha-ketoglutarate dehydrogenase complex" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

DICTYBASE|DDB_G0281797 bkdC "dihydrolipoyl transacylase" [Dictyostelium discoideum (taxid:44689)]

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 187/452 (41%), Positives = 263/452 (58%)

Query:    21 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL 80
             S  +   LA  GEGIAECE+L W+VKEGD+I+EF  LC VQSDKAT+EITSRY G V ++
Sbjct:    75 SSAIKFNLADVGEGIAECEVLVWYVKEGDQIKEFDKLCEVQSDKATVEITSRYDGIVTKI 134

Query:    81 LHAPGNIVKVGETLLKLVVGDSAVPT-----PSSDVLESVKPPG----SENSPDSKLNKD 131
              H  G++ KVGE L+++    S         P+S V  +V PP     S +S  S ++  
Sbjct:   135 CHKIGDMAKVGEPLVEITPESSIAEIKLNAGPASQV--TVTPPSVSVSSSSSVSSSVSSS 192

Query:   132 TVGG----------------VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 175
                                 V+ATP VRNL KL  ++L  +  TGKDGR+LKED+L    
Sbjct:   193 VASSLDHEYDITKKNGQKYKVMATPAVRNLGKLKSVDLKQIQGTGKDGRILKEDILN--- 249

Query:   176 QKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA 235
                A     T S+    +E +     T   T +       +  VP+ G ++ MV++M+ A
Sbjct:   250 SLNAEAKSKTQSIPI-AKEVITTTTTTTTTTTSAAA---KETRVPITGIRKIMVRSMNAA 305

Query:   236 AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFN 295
               +PHF + EE   D+L  L+   +   ++  IK ++LP +IK+ S+++ +YP +NS  +
Sbjct:   306 CSVPHFGFTEEYIMDSLSDLRNKVKPLAAEKGIKLSYLPFIIKAASLSLLRYPVLNSSIS 365

Query:   296 EESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPAD 355
             ++  E+I K  HNIGIAM +  GL VPNIKNV+S SI EI KEL+RLQ+L+    L P D
Sbjct:   366 QDQTEIIYKNYHNIGIAMDSPQGLLVPNIKNVESKSIFEIAKELNRLQELSGKGLLTPND 425

Query:   356 NSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGA 415
              SGGT TLSNIG IGG   +P+L LPEV I A+G+I+ +PR +    V    IM ++   
Sbjct:   426 MSGGTFTLSNIGTIGGLHSSPVLLLPEVCIGAIGKIQSLPRFNKHHAVITQSIMNISWSG 485

Query:   416 DHRVLDGATVAKFCNEWKQLIENPELLLLQMR 447
             DHRV+DGAT+A+F N  K  +ENP  +++  R
Sbjct:   486 DHRVIDGATMARFSNALKDYLENPSTMIMDTR 517

GO:0048037 "cofactor binding" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

WB|WBGene00014054 ZK669.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 183/427 (42%), Positives = 261/427 (61%)

Query:    23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
             +V   L+  GEGIAE ++ +W+VKEGD I +F  +C VQSDKA + I+ RY G V +L H
Sbjct:    30 VVQFKLSDIGEGIAEVQVKEWYVKEGDTISQFDKVCEVQSDKAAVTISCRYDGIVKKLYH 89

Query:    83 APGNIVKVGETLLKLVV-GDSAVPT-PSSDVLESVKPPGSENSPDSKLNKDTVGGVLATP 140
                 + +VG+ L+ + + G+   P  P  +   S       ++P +  +  + G VLATP
Sbjct:    90 EVDGMARVGQALIDVEIEGNVEEPEQPKKEAASSSPEAPKSSAPKAPESAHSEGKVLATP 149

Query:   141 TVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEE 200
              VR +A    I L +V  TGKDGRVLKEDVLK+  Q   AD  S  S +     Q     
Sbjct:   150 AVRRIAIENKIKLAEVRGTGKDGRVLKEDVLKFLGQV-PADHTS-GSTNIRTTHQA---P 204

Query:   201 ETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQ 260
             +   +++  +K   +D  VP+RG+ R MVKTM+ A KIPHF Y +EIN D+LVK +A  +
Sbjct:   205 QPSSKSYEPLK---EDVAVPIRGYTRAMVKTMTEALKIPHFGYNDEINVDSLVKYRAELK 261

Query:   261 NNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLA 320
                 + +IK +++P  IK+ S+A+ +YP +NS  +E+   VI K SHNI +AM T  GL 
Sbjct:   262 EFAKERHIKLSYMPFFIKAASLALLEYPSLNSTTDEKMENVIHKASHNICLAMDTPGGLV 321

Query:   321 VPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNL 380
             VPNIKN +  SI EI +EL+RL +  K  ++   D   GT +LSNIG IGG + +P++  
Sbjct:   322 VPNIKNCEQRSIFEIAQELNRLLEAGKKQQIKREDLIDGTFSLSNIGNIGGTYASPVVFP 381

Query:   381 PEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 440
             P+VAI A+G+IEK+PR     NV P  IM V+  ADHRV+DGAT+A+F N WK  +E+P 
Sbjct:   382 PQVAIGAIGKIEKLPRFDKHDNVIPVNIMKVSWCADHRVVDGATMARFSNRWKFYLEHPS 441

Query:   441 LLLLQMR 447
              +L Q++
Sbjct:   442 AMLAQLK 448

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|F1S563 DBT "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 177/428 (41%), Positives = 260/428 (60%)

Query:    23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
             IV   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct:    64 IVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 123

Query:    83 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGG-VLATPT 141
                +   VG+ L+ +     A+     DV+E+   P    S D   +++  G   LATP 
Sbjct:   124 NLDDTAYVGKPLVDIET--EALKDSEEDVVET---PAV--SHDEHTHQEIKGHKTLATPA 176

Query:   142 VRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV-QKGAADGPSTASVSADCREQLLGEE 200
             VR LA    I L +V  +GKDGR+LKED+L Y   Q GA   PS  +       +   ++
Sbjct:   177 VRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSPKAEIIPPPPK--PKD 234

Query:   201 ETYPQTFAEVKWYPD-DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASF 259
              T P   ++   +   D+T P++GF + MVKTMS A KIPHF Y +E++   LVKL+   
Sbjct:   235 RTIPIPISKPPVFTGKDRTEPIKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREEL 294

Query:   260 QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGL 319
             +       IK TF+P  +K+ S+ + ++P +N+  +E    +  K SHNIG+AM T  GL
Sbjct:   295 KPIALARGIKLTFMPFFLKAASLGLLQFPILNASMDENCQSITYKASHNIGVAMDTDQGL 354

Query:   320 AVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLN 379
              VPN+KNVQ  SI E+  EL+RLQ+L    +L+  D +GGT TLSNIG+IGG +  P++ 
Sbjct:   355 IVPNVKNVQICSIFEVATELNRLQKLGSAGQLSTPDLTGGTFTLSNIGSIGGTYAKPVIL 414

Query:   380 LPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENP 439
              PEVAI A+G I+ +PR ++ G+V+ + IM V+  ADHR++DGAT+++F N WK  +ENP
Sbjct:   415 PPEVAIGALGAIKALPRFNEKGDVHKAQIMNVSWSADHRIIDGATMSRFSNLWKSYLENP 474

Query:   440 ELLLLQMR 447
              L+LL ++
Sbjct:   475 SLMLLDLK 482

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

UNIPROTKB|E2RQG4 DBT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 184/444 (41%), Positives = 264/444 (59%)

Query:    10 YSN-HALADLPAS--G-IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKA 65
             YS+ H L    A+  G IV   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA
Sbjct:    47 YSHPHQLLQTSAALQGQIVQFKLSDIGEGIREVTIKEWYVKEGDTVSQFDSICEVQSDKA 106

Query:    66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPD 125
             ++ ITSRY G + +L +   +I  VG+ L+ +     A+     DV+E+   P    S D
Sbjct:   107 SVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET--EALKDSEEDVVET---PAV--SHD 159

Query:   126 SKLNKDTVGG-VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV-QKGAADGP 183
                +++  G   LATP VR LA    I L +V  +GKDGR+LKED+L Y   Q GA   P
Sbjct:   160 EHTHQEIKGQKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPP 219

Query:   184 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHY 243
             S  +          G+    P +     +   D+T P++GF + MVKTMS A KIPHF Y
Sbjct:   220 SPKAELVPPPPTPKGKVTPMPASKPPA-FTGRDRTEPIKGFHKAMVKTMSAALKIPHFGY 278

Query:   244 VEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVIL 303
              +E++   LVKL+   +       IK +F+P  +K+ S+ + ++P +N+  +E    +  
Sbjct:   279 CDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQHITY 338

Query:   304 KGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITL 363
             K SHNIG+AM T+ GL VPN+KNVQ  SI EI  EL+RLQ+L    +L+  D +GGT TL
Sbjct:   339 KASHNIGVAMDTEQGLIVPNVKNVQICSIFEIATELNRLQKLGSIGQLSTTDLAGGTFTL 398

Query:   364 SNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGA 423
             SNIG+IGG +  P++  PEVAI A+G I+ +PR +  G VY + IM V+  ADHR++DGA
Sbjct:   399 SNIGSIGGTYTKPVILPPEVAIGALGSIKALPRFNHKGEVYKAQIMNVSWSADHRIIDGA 458

Query:   424 TVAKFCNEWKQLIENPELLLLQMR 447
             T+++F N WK  +ENP  +LL ++
Sbjct:   459 TMSRFSNLWKSYLENPAFMLLDLK 482

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

UNIPROTKB|F1P1X9 DBT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 181/434 (41%), Positives = 256/434 (58%)

Query:    23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
             IV   L+  GEGI E  + +W++KEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct:    64 IVQFKLSDIGEGITEVTVKEWYIKEGDSVSQFDSICEVQSDKASVTITSRYDGIIRKLHY 123

Query:    83 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 142
                 I  VG+ L+ + +  S    P  DV+E+      E++        T    LATP V
Sbjct:   124 NLDEIAYVGKPLVDIEIDASKGVAPEEDVVETPAMSHEEHTHQEIKGHKT----LATPAV 179

Query:   143 RNLAKLYGINLYDVDATGKDGRVLKEDVLKY-AVQKGAADGPST-ASVSADC-REQLL-- 197
             R LA    I L +V  TGKD R+LKED+L + A Q GA   PS  A + A   + + +  
Sbjct:   180 RRLAMENNIKLSEVIGTGKDNRILKEDILSFLAKQTGAILPPSPKAEIIAPLSKSETVPT 239

Query:   198 ---GEEETYPQTFAE-VKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALV 253
                 +    P   +  V +   DKT P+ GF + MVKTMS A KIPHF Y +EI+   LV
Sbjct:   240 APKDKARKIPIPISRPVVFSGKDKTEPITGFHKAMVKTMSAALKIPHFGYCDEIDLTHLV 299

Query:   254 KLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM 313
             +L+   +       +K +F+P  IK+ S+ + +YP +N+  +E    V  K SHNIG+AM
Sbjct:   300 QLREELKPLAQSRGVKLSFMPFFIKAASLGLLQYPILNASLDEGCQNVTYKASHNIGVAM 359

Query:   314 ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF 373
              T+ GL VPN+KNVQ  SI EI  EL+RLQ L   ++L   D +GGT TLSNIG IGG +
Sbjct:   360 DTEQGLIVPNVKNVQVSSIFEIASELNRLQALGSASQLGTNDLTGGTFTLSNIGTIGGTY 419

Query:   374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWK 433
                ++  PEVAI A+G+I+ +PR +  G V+ + IM V+  ADHR++DGAT+A+F N WK
Sbjct:   420 AKAVILPPEVAIGALGKIQVLPRFNGKGEVFKAQIMNVSWSADHRIIDGATMARFSNLWK 479

Query:   434 QLIENPELLLLQMR 447
               +ENP L+LL ++
Sbjct:   480 SYLENPALMLLDLK 493

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

ZFIN|ZDB-GENE-050320-85 dbt "dihydrolipoamide branched chain transacylase E2" [Danio rerio (taxid:7955)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 176/438 (40%), Positives = 254/438 (57%)

Query:    20 ASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQ 79
             A  IV   L+  GEGI E  + +W+VKEGD++ +F  +C VQSDKA++ ITSRY G + +
Sbjct:    60 ARPIVQFKLSDIGEGIMEVTVKEWYVKEGDKVSQFDSICEVQSDKASVTITSRYDGVIRK 119

Query:    80 LLHAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLAT 139
             L +   +I  VG+ L+ +        +P  DV+E+      E+SP       T     AT
Sbjct:   120 LYYDVDSIALVGKPLVDIETDGGQAESPQEDVVETPAVSQEEHSPQEIKGHKTQ----AT 175

Query:   140 PTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY-AVQKGAADGPST-----ASVSADCR 193
             P VR LA    I L +V  TGKDGR+LKED+L + A Q GA   P+          A   
Sbjct:   176 PAVRRLAMENNIKLSEVVGTGKDGRILKEDILNFIAKQTGAILPPAPFQEIRPQPPAAAA 235

Query:   194 EQLLGEEETYPQTFAEVKWYP----DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINC 249
                   + T P     V   P     D T P++GFQ+ MVKTMS A KIPHF Y +E++ 
Sbjct:   236 PLTPSAKATPPSVPIPVIPKPVFTGKDHTEPIKGFQKAMVKTMSAALKIPHFGYKDEVDL 295

Query:   250 DALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNI 309
               LV+L++  +       +K +++P  IK+ S+A+  +P +NS  +E    +  K +HNI
Sbjct:   296 SQLVRLRSELKGLTESRGVKLSYMPFFIKAASLALLHFPILNSSLDENCTSITYKAAHNI 355

Query:   310 GIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAI 369
             G+AM T  GL VPN+KN+Q LS+ EI  EL+RLQ L    +L  +D +GGT TLSNIG+I
Sbjct:   356 GLAMDTSQGLLVPNVKNIQMLSVFEIAVELNRLQILGASGQLGTSDLTGGTFTLSNIGSI 415

Query:   370 GGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFC 429
             GG +  P++  PEVAI A+G+I+ +PR +    V  + IM V+  ADHR++DGAT+ +F 
Sbjct:   416 GGTYAKPVILPPEVAIGALGKIQVLPRFNHKDEVVKAHIMNVSWSADHRIIDGATMCRFS 475

Query:   430 NEWKQLIENPELLLLQMR 447
             N W+  +ENP  ++L ++
Sbjct:   476 NLWRSYLENPASMVLDLK 493

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0009081 "branched-chain amino acid metabolic process" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|P11181 DBT "Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 179/429 (41%), Positives = 258/429 (60%)

Query:    23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
             IV   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct:    64 IVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 123

Query:    83 APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGG-VLATPT 141
                +   VG+ L+ +     A+     DV+E+   P    S D   +++  G   LATP 
Sbjct:   124 NLDDTAYVGKPLVDIET--EALKDSEEDVVET---PAV--SHDEHTHQEIKGQKTLATPA 176

Query:   142 VRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV-QKGAADGPST-ASVSADCREQLLGE 199
             VR LA    I L +V  +GKDGR+LKED+L Y   Q GA   PS  A +     +    +
Sbjct:   177 VRRLAMENNIKLSEVIGSGKDGRILKEDILNYLEKQTGAILPPSPKAEIMPPPPKP---K 233

Query:   200 EETYPQTFAEVKWY-PDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKAS 258
             + T P   ++   +   D+T P++GF + MVKTMS A KIPHF Y +E++   LVKL+  
Sbjct:   234 DRTIPIPISKPPVFIGKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREE 293

Query:   259 FQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHG 318
              +       IK +F+P  +K+ S+ + ++P +N+  +E    +  K SHNIGIAM T+ G
Sbjct:   294 LKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQG 353

Query:   319 LAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLL 378
             L VPN+KNVQ  SI EI  EL+RLQ+L    +L+  D  GGT TLSNIG+IGG +  P++
Sbjct:   354 LIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVI 413

Query:   379 NLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIEN 438
               PEVAI A+G I+ +PR ++ G V  + IM V+  ADHR++DGATV++F N WK  +EN
Sbjct:   414 LPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLEN 473

Query:   439 PELLLLQMR 447
             P  +LL ++
Sbjct:   474 PAFMLLDLK 482

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

GO:0043754 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CT13	ODP2_STAES	2, ., 3, ., 1, ., 1, 2	0.3472	0.9217	0.9515	yes	no
P09062	ODB2_PSEPU	2, ., 3, ., 1, ., 1, 6, 8	0.3083	0.8881	0.9385	yes	no
Q5HQ74	ODP2_STAEQ	2, ., 3, ., 1, ., 1, 2	0.3472	0.9217	0.9515	yes	no
P65635	ODP2_STAAM	2, ., 3, ., 1, ., 1, 2	0.3528	0.9239	0.9604	yes	no
P65636	ODP2_STAAN	2, ., 3, ., 1, ., 1, 2	0.3528	0.9239	0.9604	yes	no
Q59821	ODP2_STAAU	2, ., 3, ., 1, ., 1, 2	0.3543	0.9217	0.9581	yes	no
Q23571	ODB2_CAEEL	2, ., 3, ., 1, ., 1, 6, 8	0.4262	0.9328	0.9308	yes	no
Q9I1M0	ODB2_PSEAE	2, ., 3, ., 1, ., 1, 6, 8	0.3053	0.8747	0.9135	yes	no
Q6GHZ0	ODP2_STAAR	2, ., 3, ., 1, ., 1, 2	0.3528	0.9239	0.9604	yes	no
P11181	ODB2_BOVIN	2, ., 3, ., 1, ., 1, 6, 8	0.4023	0.9261	0.8589	yes	no
P11182	ODB2_HUMAN	2, ., 3, ., 1, ., 1, 6, 8	0.4178	0.9351	0.8672	yes	no
Q6GAB9	ODP2_STAAS	2, ., 3, ., 1, ., 1, 2	0.3528	0.9239	0.9604	yes	no
Q8NX76	ODP2_STAAW	2, ., 3, ., 1, ., 1, 2	0.3528	0.9239	0.9604	yes	no
P53395	ODB2_MOUSE	2, ., 3, ., 1, ., 1, 6, 8	0.4215	0.9328	0.8651	yes	no
P21883	ODP2_BACSU	2, ., 3, ., 1, ., 1, 2	0.3131	0.9082	0.9185	yes	no
Q5HGY9	ODP2_STAAC	2, ., 3, ., 1, ., 1, 2	0.3528	0.9239	0.9604	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.766
3rd Layer	2.3.1.12	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	447
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	0.0
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	1e-121
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	1e-114
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	1e-102
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	5e-86
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	1e-63
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	2e-62
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	3e-60
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	1e-54
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	6e-53
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	1e-49
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	8e-48
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	2e-47
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-40
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	3e-29
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	5e-25
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	2e-22
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	8e-16
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	8e-14
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-10
pfam02817	39	pfam02817, E3_binding, e3 binding domain	2e-09
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	2e-07
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	3e-07
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	3e-07
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	9e-07
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	2e-05
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	5e-05
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	7e-05
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	2e-04
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	7e-04
PRK08225	70	PRK08225, PRK08225, acetyl-CoA carboxylase biotin	0.002

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score =  709 bits (1832), Expect = 0.0
 Identities = 292/422 (69%), Positives = 337/422 (79%), Gaps = 6/422 (1%)

Query: 26  VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG 85
           VPLAQTGEGIAECELL+WFVKEGD++EEFQPLC VQSDKATIEITSRYKGKVAQ+  +PG
Sbjct: 1   VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPG 60

Query: 86  NIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNL 145
           +IVKVGETLLK++V DS      S +L +          +S      + GVL+TP VR+L
Sbjct: 61  DIVKVGETLLKIMVEDSQHLRSDSLLLPTDSSNIVS-LAESDERGSNLSGVLSTPAVRHL 119

Query: 146 AKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQ 205
           AK YGI+L D+  TGKDGRVLKEDVLKYA QKG     S+A  +    +     EE    
Sbjct: 120 AKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQ-----EEFSTS 174

Query: 206 TFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSD 265
                +   +DKT+PLRGFQR MVKTM+ AAK+PHFHYVEEIN DALV+LKASFQ NN+D
Sbjct: 175 VSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNTD 234

Query: 266 PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIK 325
           P +KHTFLP LIKSLSMA+SKYP +NSCFNEE+ E+ LKGSHNIG+AMAT+HGL VPNIK
Sbjct: 235 PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIK 294

Query: 326 NVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAI 385
           NVQSLS+LEITKELSRLQ LA +N+LNP D +GGTITLSNIGAIGGKFG+P+LNLPEVAI
Sbjct: 295 NVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAI 354

Query: 386 IAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQ 445
           IA+GRI+KVPR  DDGNVYP+ IMTV IGADHRVLDGATVA+FCNEWK  +E PELL+L 
Sbjct: 355 IALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKPELLMLH 414

Query: 446 MR 447
           MR
Sbjct: 415 MR 416

Length = 416

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  357 bits (920), Expect = e-121
 Identities = 140/424 (33%), Positives = 224/424 (52%), Gaps = 35/424 (8%)

Query: 32  GEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVG 91
           GEG+ E E+++W VK GD ++E QPL  V++DKAT+EI S   G VA+LL   G++V VG
Sbjct: 11  GEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVG 70

Query: 92  ETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDT----------VGGVLATPT 141
             +  +     A    +++       P    +  +                     A+P 
Sbjct: 71  SVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPA 130

Query: 142 VRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEE 201
           VR LA+  G++L  V  +G  GR+ KEDV   A     A   + A+ +A       GEE 
Sbjct: 131 VRKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEER 190

Query: 202 TYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQ 260
                            VPL G ++ + K M  +  +IPHF   +E++  AL+ L+   +
Sbjct: 191 -----------------VPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLK 233

Query: 261 NNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLA 320
                  +K T    LIK++++A+ K+P +N+ ++++   ++LK   NIGIA+AT  GL 
Sbjct: 234 AIG----VKLTVTDFLIKAVALALKKFPELNASWDDD--AIVLKKYVNIGIAVATDGGLI 287

Query: 321 VPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNL 380
           VP I++    S+ E+ +E+  L + A++ +L P +  GGT T+SN+G  GG +  P++N 
Sbjct: 288 VPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINP 347

Query: 381 PEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 440
           PEVAI+ +G I + P +  DG +    +M +++  DHRV+DGA  A+F    K+L+ENP 
Sbjct: 348 PEVAILGVGAIVERPVV-VDGEIVVRKVMPLSLSFDHRVIDGADAARFLKALKELLENPA 406

Query: 441 LLLL 444
           LLLL
Sbjct: 407 LLLL 410

Length = 411

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  344 bits (885), Expect = e-114
 Identities = 141/441 (31%), Positives = 222/441 (50%), Gaps = 23/441 (5%)

Query: 19  PASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVA 78
              G+V+V +   GE I E E+++W VK GD +EE Q L  V++DKAT+EI S   G V 
Sbjct: 115 AGGGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVK 173

Query: 79  QLLHAPGNIVKVGETLLKLVVGDSA---------VPTPSSDVLESVKPPGSENSPDSKLN 129
           ++    G+ V VG  L+ + V  +A             ++        P +  +P +   
Sbjct: 174 EIKVKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAP 233

Query: 130 KDTVGG---VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY--AVQKGAADGPS 184
                      A+P VR LA+  G++L  V  TGK GR+ KEDV  +       AA   +
Sbjct: 234 AAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAAAAAA 293

Query: 185 TASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHY 243
            A+ +      LL   +     F E++      T PL   ++     +  +   IPH   
Sbjct: 294 AAAAAGGGGLGLLPWPKVDFSKFGEIE------TKPLSRIKKISAANLHRSWVTIPHVTQ 347

Query: 244 VEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVIL 303
            +E +   L  L+   +       +K T LP  IK++  A+ ++P  N+  +E+  E+  
Sbjct: 348 FDEADITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTY 407

Query: 304 KGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITL 363
           K   NIG A+ T +GL VP IK+V   S+LEI +E++ L + A+D +L P D  GG  T+
Sbjct: 408 KKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTI 467

Query: 364 SNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGA 423
           S++G IGG    P++N PEVAI+ +G+ +  P + D     P  ++ +++  DHRV+DGA
Sbjct: 468 SSLGGIGGTAFTPIINAPEVAILGVGKSQMKP-VWDGKEFVPRLMLPLSLSYDHRVIDGA 526

Query: 424 TVAKFCNEWKQLIENPELLLL 444
           T A+F N  KQL+ +P  +LL
Sbjct: 527 TAARFTNYLKQLLADPRRMLL 547

Length = 547

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  309 bits (793), Expect = e-102
 Identities = 133/425 (31%), Positives = 220/425 (51%), Gaps = 24/425 (5%)

Query: 22  GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 81
             +++ +   GE + E  +++W  K GD+++E   L  V++DKAT+E+ +   G +A++L
Sbjct: 1   MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60

Query: 82  HAPGNIVKVGETLLKLVVGDSAVPTPSSDVLESVK-PPGSENSPDSKLNKDTVGGVLATP 140
              G+ V VG  + ++    +  P  +    E     P S  +  +       G VLA+P
Sbjct: 61  VEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAA---AGRVLASP 117

Query: 141 TVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEE 200
            VR LA+  GI+L  V  TG  GR+ K+DV     +K AA   +  + +A       GEE
Sbjct: 118 AVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAA--AAAPAPAAAAPASAAGEE 175

Query: 201 ETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASF 259
           E                 VP+   ++ + + M  + + IPH     E++   L+ L+   
Sbjct: 176 ER----------------VPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKL 219

Query: 260 QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGL 319
           +       +K TFL  L+K++  A+ K+P +N+  + +  E++     NIGIA+ T  GL
Sbjct: 220 KEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGL 279

Query: 320 AVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLN 379
            VP I++    S+ EI KE+  L + A+D +L P +  GGT T+SN+G  G     P++N
Sbjct: 280 VVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIIN 339

Query: 380 LPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENP 439
            P+VAI+ +G IE+ P +     V   P+M +++  DHRV+DGA  A+F    K+L+E+P
Sbjct: 340 PPQVAILGVGAIEERPVVVGGEIV-VRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDP 398

Query: 440 ELLLL 444
           E LLL
Sbjct: 399 ERLLL 403

Length = 404

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score =  261 bits (670), Expect = 5e-86
 Identities = 86/208 (41%), Positives = 135/208 (64%), Gaps = 2/208 (0%)

Query: 237 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNE 296
            IPHF   +E++  AL+ L+   + +     +K TFL  L+K++++A+ ++P +N+ ++ 
Sbjct: 7   TIPHFTLTDEVDVTALLALREKLKEDAKKEGLKLTFLDFLVKAVALALKEFPELNASWDG 66

Query: 297 ESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADN 356
           ++ E++ K   NIGIA+AT  GL VP I+N    S+LEI KE+  L + A+D +L P D 
Sbjct: 67  DA-EIVYKKYVNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDGKLKPEDL 125

Query: 357 SGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGAD 416
            GGT T+SN+G  G  F  P++N P+VAI+ +G I K P +  DG +    +M +++  D
Sbjct: 126 QGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAIRKRPVV-VDGEIVIRKVMPLSLSFD 184

Query: 417 HRVLDGATVAKFCNEWKQLIENPELLLL 444
           HRV+DGA  A+F N+ K+L+ENPELLLL
Sbjct: 185 HRVIDGAEAARFLNDLKELLENPELLLL 212

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  216 bits (551), Expect = 1e-63
 Identities = 126/450 (28%), Positives = 211/450 (46%), Gaps = 32/450 (7%)

Query: 14  ALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRY 73
           A A   A+G+ DV +   G    E E+ +  VK GD++E  Q L  V+ DKA++E+ + +
Sbjct: 197 AAAPAAAAGVKDVNVPDIGGD--EVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPF 254

Query: 74  KGKVAQLLHAPGNIVKVGETLLKLVVGDSA---------VPTPSSDVLESVKPPGSENSP 124
            G V ++    G+ VK G  +++  V  +A            P+    ++  P  +  + 
Sbjct: 255 AGTVKEIKVNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAK 314

Query: 125 DSKLNKDTVGG--VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADG 182
               ++       V ATP VR LA+ +G+NL  V  TG+ GR+LKEDV  Y   K A   
Sbjct: 315 AEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYV--KDAVKR 372

Query: 183 PSTASVSADCREQLLGE---EETYPQTFAEVKWYPDDKTVPLRGFQ----RTMVKTMSMA 235
              A  +A       G     +     F E++       V L   Q      + +   M 
Sbjct: 373 AEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIE------EVELGRIQKISGANLHRNWVMI 426

Query: 236 AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFN 295
             +  F   +    +A  K + +         +K T L  ++K+++ A+ + P  NS  +
Sbjct: 427 PHVTQFDKADITELEAFRKQQNAEAEKR-KLGVKITPLVFIMKAVAAALEQMPRFNSSLS 485

Query: 296 EESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPAD 355
           E+   + LK   NIGIA+ T +GL VP  K+V    I+E+++EL  + + A+D +L   D
Sbjct: 486 EDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGD 545

Query: 356 NSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY-PSPIMTVNIG 414
             GG  T+S+IG +G     P++N PEVAI+ + +    P    +G  + P  ++ +++ 
Sbjct: 546 MQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEP--VWNGKEFAPRLMLPLSLS 603

Query: 415 ADHRVLDGATVAKFCNEWKQLIENPELLLL 444
            DHRV+DGA  A+F       + +   L+L
Sbjct: 604 YDHRVIDGADGARFITIINDRLSDIRRLVL 633

Length = 633

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score =  204 bits (520), Expect = 2e-62
 Identities = 106/311 (34%), Positives = 175/311 (56%), Gaps = 13/311 (4%)

Query: 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY-AVQKGAADGPSTASVSADCRE 194
           +LATP  R LAK  GI++  +  +G+DG++L EDV  +    K A      ASVS+    
Sbjct: 2   ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSS---- 57

Query: 195 QLLGEEETYPQTFAEVKWYPD-DKTVPLR-GFQRTMVKTMSMAAKIPHFHYVEEINCDAL 252
                 +T     A  K     +K  P+R    R M  + S  A   + + V EI+   L
Sbjct: 58  -AQQAAKTAAPAAAPPKLEGKREKVAPIRKAIARAMTNSWSNVA---YVNLVNEIDMTKL 113

Query: 253 VKLKASFQNN-NSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGI 311
             L+ S ++       +K TFLP + K++ +A+ ++P   + ++E + E++   + N+GI
Sbjct: 114 WDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGI 173

Query: 312 AMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGG 371
           A+ T+ GL VP IKN Q LSI+EI KE+SRL + A++ ++ P +  GG+ T++N G++G 
Sbjct: 174 AVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGS 233

Query: 372 KFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNE 431
            +G P++N PE+AI  +G I     +  +G +    +M + + ADHR +DGAT+ +F + 
Sbjct: 234 LYGVPVINYPELAIAGVGAIIDKAIVK-NGQIVAGKVMHLTVAADHRWIDGATIGRFASR 292

Query: 432 WKQLIENPELL 442
            K+L+E PE+L
Sbjct: 293 VKELLEKPEIL 303

Length = 306

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  205 bits (522), Expect = 3e-60
 Identities = 121/447 (27%), Positives = 211/447 (47%), Gaps = 27/447 (6%)

Query: 16  ADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKG 75
           A   +SG+ +V +   G  I +  +++  VK GD +   Q L  ++SDKA++E+ +   G
Sbjct: 109 AAGQSSGVQEVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASG 167

Query: 76  KVAQLLHAPGNIVKVGETLLKLVVGDSAVPT-------------PSSDVLESVKPPGSEN 122
            V  +    G+ V  G+ +L L V  S   T             P++   E    P +  
Sbjct: 168 VVKSVKVKVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAK 227

Query: 123 S-PDSKLNKDTVGGVL---ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKG 178
           +   +     T        A P VR LA+ +G++L  V  TG  GR+L+EDV ++ V++ 
Sbjct: 228 AQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRF-VKEP 286

Query: 179 AADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AK 237
           +    + A+ +A      L         F EV+       V +   ++     ++     
Sbjct: 287 SVRAQAAAASAAGGAPGALPWPNVDFSKFGEVE------EVDMSRIRKISGANLTRNWTM 340

Query: 238 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 297
           IPH  + ++ +   +   +           +K T L  L+K+++ A+ K+P  N+  +  
Sbjct: 341 IPHVTHFDKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLG 400

Query: 298 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNS 357
             ++ILK   NIG+A+ T +GL VP IK+V    I E+  ELS L + A+D +L P +  
Sbjct: 401 GEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQ 460

Query: 358 GGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADH 417
           G   T+S++G IGG    P++N PEVAI+ + +    P + +     P  ++ +++  DH
Sbjct: 461 GACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEP-VWNGKEFEPRLMLPLSLSYDH 519

Query: 418 RVLDGATVAKFCNEWKQLIENPELLLL 444
           RV+DGA  A+F     + + +   LLL
Sbjct: 520 RVIDGADAARFTTYICESLADIRRLLL 546

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  187 bits (477), Expect = 1e-54
 Identities = 119/439 (27%), Positives = 211/439 (48%), Gaps = 52/439 (11%)

Query: 40  LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLV 98
           L KW  KEGD++     +  +++DKAT+E  +  +G +A++L   G   V V + +  LV
Sbjct: 16  LAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75

Query: 99  --------------VGDSAVPTPSSDVLESVKPPGSENSPDS-------------KLNKD 131
                         +  SA P P    +    PP +     +               +K+
Sbjct: 76  EEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKE 135

Query: 132 TVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGA-ADGPSTASVSA 190
           +   + A+P  + LAK  GI+L  V  +G +GR++K+D+  +  Q  A A+  + A+  A
Sbjct: 136 SGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQSPASANQQAAATTPA 195

Query: 191 DCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAK--IPHFHYVEEIN 248
                      +Y             + VPL   ++ + K + + +K  IPH++   E N
Sbjct: 196 TYPAAAPVSTGSY-------------EDVPLSNIRKIIAKRL-LESKQTIPHYYVSIECN 241

Query: 249 CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSH- 307
            D L+ L+       S+   K +    +IK+ ++A+ + P  NS + +     I +  + 
Sbjct: 242 VDKLLALRKELNAMASE-VYKLSVNDFIIKASALALREVPEANSSWTDN---FIRRYKNV 297

Query: 308 NIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIG 367
           +I +A+AT  GL  P ++N  +  +  I+ E+  L + A++N+L P +  GGT T+SN+G
Sbjct: 298 DISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLG 357

Query: 368 AIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPS--PIMTVNIGADHRVLDGATV 425
             G K    ++N P+  I+A+G +E V  + +D     +   IM+V +  DHRV+DGA  
Sbjct: 358 MFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVG 417

Query: 426 AKFCNEWKQLIENPELLLL 444
           A+F   +K+ +ENP  +LL
Sbjct: 418 AEFLKSFKKYLENPIEMLL 436

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score =  182 bits (463), Expect = 6e-53
 Identities = 102/422 (24%), Positives = 208/422 (49%), Gaps = 22/422 (5%)

Query: 24  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83
           +++ + +  E I E  + +W  K GD ++  + +  +++DK  +E+ S   G + ++L  
Sbjct: 1   IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFK 60

Query: 84  PGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVR 143
            G+ V+ G+ L   ++ +    T +       +   +  +  +            +P  R
Sbjct: 61  EGDTVESGQVLA--ILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAAR 118

Query: 144 NLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETY 203
            LAK +GI+L  V  TG  GRV KED++K      +A  P+ A+ +             +
Sbjct: 119 RLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQQPAPAAAAK--------APANF 170

Query: 204 PQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNN- 262
            +    VK     + +  R     + +  +  A +  F+   E++  A+++L+  ++   
Sbjct: 171 TRPEERVKMTRLRQRIAER-----LKEAQNSTAMLTTFN---EVDMSAVMELRKRYKEEF 222

Query: 263 NSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVP 322
                +K  F+   +K++  A+ ++P +N+  + +  +++ K  ++I +A++T  GL VP
Sbjct: 223 EKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGD--DIVYKDYYDISVAVSTDRGLVVP 280

Query: 323 NIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPE 382
            ++N   +S  +I KE++ L + A+D +L   D +GGT T++N G  G     P++N P+
Sbjct: 281 VVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQ 340

Query: 383 VAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELL 442
            AI+ M  I++ P ++ +G +   P+M + +  DHR++DG     F    K+L+E+P  L
Sbjct: 341 SAILGMHGIKERP-VAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDPRRL 399

Query: 443 LL 444
           LL
Sbjct: 400 LL 401

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score =  173 bits (441), Expect = 1e-49
 Identities = 110/433 (25%), Positives = 211/433 (48%), Gaps = 40/433 (9%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
           +V++ +    E + E  +  W  K GD ++  + L  +++DK  +E+ +   G ++++L 
Sbjct: 2   MVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILA 61

Query: 83  APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 142
             G+ V VG+ L ++  G +A    ++    +        +  +   + +      +P  
Sbjct: 62  EEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDA--LSPAA 119

Query: 143 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGE-EE 201
           R LA   G++   V  TGK GRV KEDVL       AA     A+  A     L    EE
Sbjct: 120 RKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEE 179

Query: 202 TYP-----QTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLK 256
             P     +T A                   +++  +  A +  F+   E++   ++ L+
Sbjct: 180 RVPMTRLRKTIA-----------------ERLLEAQNTTAMLTTFN---EVDMTPVMDLR 219

Query: 257 ASFQNN-NSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMAT 315
             +++       +K  F+   +K++  A+ +YP +N+  + +  +++    ++IGIA+ T
Sbjct: 220 KQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGD--DIVYHNYYDIGIAVGT 277

Query: 316 QHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGA 375
             GL VP +++   LS  EI K+++ L + A+D +L+  + +GGT T++N    GG FG+
Sbjct: 278 PRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITN----GGVFGS 333

Query: 376 ----PLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNE 431
               P++N P+ AI+ M +I++ P ++ +G +   P+M + +  DHR++DG     F   
Sbjct: 334 LMSTPIINPPQSAILGMHKIKERP-VAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVT 392

Query: 432 WKQLIENPELLLL 444
            K+L+E+PE LLL
Sbjct: 393 IKELLEDPERLLL 405

Length = 407

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score =  172 bits (437), Expect = 8e-48
 Identities = 127/456 (27%), Positives = 202/456 (44%), Gaps = 57/456 (12%)

Query: 25  DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAP 84
           +V + + GE + E  +  W    GD +E  +PL  V +DK   EI S   G + ++    
Sbjct: 128 EVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPE 187

Query: 85  GNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNK-------------- 130
            + V+VG  L  +   ++A   P+ +   +    GSE +PD                   
Sbjct: 188 DDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAP 247

Query: 131 -------------DTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK 177
                            G   TP VR LAK  G++L  V  TG  GR+ K+DVL  A   
Sbjct: 248 AKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLAAAKAA 307

Query: 178 GAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRG-----------FQR 226
             A   + A  +A             P   A      +  T  LRG              
Sbjct: 308 EEARAAAAAPAAA-----------AAPAAPAAAAKPAEPDTAKLRGTTQKMNRIRQITAD 356

Query: 227 TMVKTMSMAAKIPHFHYVEEINCDAL-VKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMS 285
             ++++  +A++   H V+     AL  + K  F   N    +  TFLP  +++++ A+ 
Sbjct: 357 KTIESLQTSAQLTQVHEVDMTRVAALRARAKNDFLEKNG---VNLTFLPFFVQAVTEALK 413

Query: 286 KYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQL 345
            +P +N+ +N E+ EV      ++GIA+ T  GL VP I N   LS+  + K ++ L   
Sbjct: 414 AHPNVNASYNAETKEVTYHDVEHVGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAAR 473

Query: 346 AKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRL--SDDGN- 402
           A+DN+L P + SGGT T++NIG+ G  F  P+LN P+ AI+  G I K PR+   +DG  
Sbjct: 474 ARDNKLKPDELSGGTFTITNIGSGGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDGGE 533

Query: 403 -VYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 437
            +    +  + +  DHR++DGA   +F    K+ +E
Sbjct: 534 SIAIRSVCYLPLTYDHRLVDGADAGRFLTTIKKRLE 569

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  170 bits (432), Expect = 2e-47
 Identities = 142/479 (29%), Positives = 226/479 (47%), Gaps = 74/479 (15%)

Query: 4   MVSRCCYSNHALADLPASGIVDVP-LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQS 62
           M S   +S+ +  DLP    + +P L+ T   + E  + +W  KEGD++   + LC V++
Sbjct: 97  MQSARGFSSSS--DLPPHQEIGMPSLSPT---MTEGNIARWLKKEGDKVSPGEVLCEVET 151

Query: 63  DKATIEITSRYKGKVAQLLHAPG-NIVKVGETLLKLV--------------------VGD 101
           DKAT+E+    +G +A+++   G   +KVGE +   V                       
Sbjct: 152 DKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAP 211

Query: 102 SAVPTPSSDVLESVKPPGSENSPD-SKLNKDTVGG--VLATPTVRNLAKLYGINLYDVDA 158
            A P+P     E V+ P S   P  SK +     G  + A+P  R LA+   + L  +  
Sbjct: 212 KAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKG 271

Query: 159 TGKDGRVLKEDVLKYAVQ--KGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDD 216
           TG DGR++K D+  Y     KGA   PST S +                       Y D 
Sbjct: 272 TGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALD-------------------YTDI 312

Query: 217 KTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKA---SFQNNNSDPNIKHTFL 273
               +R  + T  + +     IPH++   +   D L+ L++   S Q  +    I    L
Sbjct: 313 PNTQIR--KVTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDL 370

Query: 274 PSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMA--TQHGLAVPNIKNVQSLS 331
             +IK+ ++A+ K P  NS + ++     ++  HN+ I +A  T++GL VP +K+     
Sbjct: 371 --VIKAAALALRKVPQCNSSWTDD----YIRQYHNVNINVAVQTENGLYVPVVKDADKKG 424

Query: 332 ILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFG----APLLNLPEVAIIA 387
           +  I +E+ +L Q A++N L P D  GGT T+SN   +GG FG      ++N P+ AI+A
Sbjct: 425 LSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSN---LGGPFGIKQFCAIINPPQSAILA 481

Query: 388 MGRIEK--VPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444
           +G  EK  +P    D   + S  M+V +  DHRV+DGA  A++   +K  IENPE +LL
Sbjct: 482 VGSAEKRVIPGSGPDQYNFAS-FMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539

Length = 539

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score =  149 bits (379), Expect = 1e-40
 Identities = 106/430 (24%), Positives = 191/430 (44%), Gaps = 67/430 (15%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
           ++ VP    G+ I+E  +++W  K GD ++E + +C +++DK +++I +   G + ++  
Sbjct: 46  VIKVP--TMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFA 103

Query: 83  APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 142
             G+ V+              V  P S++     PP +  +                   
Sbjct: 104 EEGDTVE--------------VGAPLSEIDTGGAPPAAAPA------------------- 130

Query: 143 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEET 202
                          A  K  +   E     A              +A    +     + 
Sbjct: 131 -------------AAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKP 177

Query: 203 YPQTFAEVKWYPDDKTVPL-RGFQRT---MVKTMSMAAKIPHFHYVEEINCDALV----K 254
            P   A     P +  VP+ R  QR    +  + +  A +  F+   E +  AL+    +
Sbjct: 178 PPTPVARAD--PRETRVPMSRMRQRIAERLKASQNTCAMLTTFN---ECDMSALMELRKE 232

Query: 255 LKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMA 314
            K  FQ  +    +K  F+ + +K+ ++A+ K P +N+  + +  E++ +   +I +A+A
Sbjct: 233 YKDDFQKKH---GVKLGFMSAFVKASTIALKKMPIVNAYIDGD--EIVYRNYVDISVAVA 287

Query: 315 TQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFG 374
           T  GL VP I+N ++ S  EI KEL+ L + A++N+L   D +GGT T+SN G  G   G
Sbjct: 288 TPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMG 347

Query: 375 APLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQ 434
            P++N P+ AI+ M  I+K P +  +  +   PIM + +  DHR++DG     F  + K 
Sbjct: 348 TPIINPPQSAILGMHAIKKRPVVVGN-EIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKD 406

Query: 435 LIENPELLLL 444
           LIE+P  +LL
Sbjct: 407 LIEDPARMLL 416

Length = 418

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score =  116 bits (293), Expect = 3e-29
 Identities = 87/342 (25%), Positives = 157/342 (45%), Gaps = 37/342 (10%)

Query: 138 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCR---E 194
           ATP  R LA   GINLYDV  +G +GRV KEDV  Y         P    ++ +     +
Sbjct: 8   ATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDTNVVRISPLAKRIALEHNIAWQ 67

Query: 195 QLLG-------------------EEETYPQTFAEVKW---YPDDKT-------VPLRGFQ 225
           ++ G                    E    ++ A+++     PD+ T       +P+   +
Sbjct: 68  EIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTPMR 127

Query: 226 RTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSM-- 282
           + + + M  +    P F    E++   ++ L+        +   K T +  L+ SL++  
Sbjct: 128 KVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLL-SLAVVK 186

Query: 283 AMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRL 342
            + K+P++N+   E+   +I     N+ +A+   +GL  P + N + +S+ E+      +
Sbjct: 187 TLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDV 246

Query: 343 QQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGN 402
                D +L P++    T T+SN+G  G +   P++N P  AI+ +    + P +  +G 
Sbjct: 247 IGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSSTIEKPVVV-NGE 305

Query: 403 VYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444
           +   PIM++ +  DHRV+DG   AKF  + K+LIE P  +L+
Sbjct: 306 IVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347

Length = 347

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score =  106 bits (266), Expect = 5e-25
 Identities = 98/426 (23%), Positives = 184/426 (43%), Gaps = 55/426 (12%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
            V+  +   GE I +  L  +  K G+ ++  + +  +++DK TI+I S   G + + L 
Sbjct: 91  TVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLV 150

Query: 83  APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 142
             G+ V+ G  +        A+ + S D    V P  S+  P++   K +          
Sbjct: 151 KEGDTVEPGTKV--------AIISKSEDAASQVTP--SQKIPETTDPKPS---------- 190

Query: 143 RNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEET 202
                             +D +  K +    A +  A   P     SA  +E  L  +E 
Sbjct: 191 ---------------PPAEDKQKPKVESAPVAEKPKAPSSPPPPKQSA--KEPQLPPKER 233

Query: 203 YPQTFAEVKWYPDDKTVPL-RGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQN 261
                        ++ VP+ R  +R   +               E++   L+KL++ +++
Sbjct: 234 -------------ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKD 280

Query: 262 NNSDPN-IKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLA 320
              + + +K   +   IK+   A+   P +N+  + +  ++I +   +I IA+ T  GL 
Sbjct: 281 AFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGD--DIIYRDYVDISIAVGTSKGLV 338

Query: 321 VPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNL 380
           VP I+    ++  EI K ++ L + A +  ++  + +GG+ T+SN G  G     P++N 
Sbjct: 339 VPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINP 398

Query: 381 PEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 440
           P+ AI+ M  I   P +   G+V P P+M V +  DHR++DG     F    K ++E+P+
Sbjct: 399 PQSAILGMHSIVSRPMVV-GGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQ 457

Query: 441 LLLLQM 446
            LLL +
Sbjct: 458 RLLLDI 463

Length = 463

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score = 90.2 bits (225), Expect = 2e-22
 Identities = 25/74 (33%), Positives = 45/74 (60%)

Query: 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83
           ++ +   GE + E  +++W VKEGD +EE   L  V++DKAT+E+ +   G +A++L  
Sbjct: 1  TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60

Query: 84 PGNIVKVGETLLKL 97
           G+ V VG+ +  +
Sbjct: 61 EGDTVPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 79.1 bits (196), Expect = 8e-16
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
            ++  +   GE + E E+++W VKEGD +EE QPL  V++DKAT+EI S   G V ++  
Sbjct: 2   AIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKV 60

Query: 83  APGNIVKVGETLLKLVVGDSAVPTP 107
             G+ V VG  L  +    +A    
Sbjct: 61  KVGDTVSVGGLLAVIEAAGAAAAAA 85

Length = 547

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 66.1 bits (162), Expect = 8e-14
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83
           ++     GE + E    +W VK GD+++  Q LC V++ K  +EI +   G V ++L  
Sbjct: 1  TEIKSPMIGESVKEGTA-EWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59

Query: 84 PGNIVKVGETLLKL 97
           G+ V+VG+ L K+
Sbjct: 60 EGDTVEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 62.2 bits (152), Expect = 3e-10
 Identities = 62/248 (25%), Positives = 103/248 (41%), Gaps = 53/248 (21%)

Query: 214 PDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKL------------------ 255
            +D+  PLRG    + K M  + ++P    V  +      KL                  
Sbjct: 113 VEDEVTPLRGAAAAVAKNMDASLEVPTATSVRAVP----AKLLIDNRIVINNHLKRTRGG 168

Query: 256 KASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLE-VILKGSH-NIGIA- 312
           K SF          H    +L++    A+  +P MN  + E   +  ++  +H N+G+A 
Sbjct: 169 KVSF---------THLIGYALVQ----ALKAFPNMNRHYAEVDGKPTLVTPAHVNLGLAI 215

Query: 313 -MATQHG---LAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGA 368
            +  + G   L VP IK  +++   +       + + A+D +L   D  G TI+L+N G 
Sbjct: 216 DLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPGG 275

Query: 369 IGGKFGAPLLNLPEVAIIAMGRIEKVP--------RLSDDGNVYPSPIMTVNIGADHRVL 420
           IG     P L   + AII +G +E           RL++ G    S +MT+    DHR++
Sbjct: 276 IGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELG---ISKVMTLTSTYDHRII 332

Query: 421 DGATVAKF 428
            GA   +F
Sbjct: 333 QGAESGEF 340

Length = 1228

>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain

 Score = 52.4 bits (127), Expect = 2e-09
 Identities = 20/39 (51%), Positives = 23/39 (58%)

Query: 134 GGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK 172
           G V A+P  R LA   GI+L  V  TG  GR+ KEDVL 
Sbjct: 1   GRVFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDVLA 39

This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit. Length = 39

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 34  GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET 93
           G  E E+ +  VK GD +E  Q L  V+ DKA++E+ + + G V ++    G+ V  G  
Sbjct: 114 GSDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSL 173

Query: 94  LLKL-VVGDSAVPTPS 108
           ++   V G++    P+
Sbjct: 174 IMVFEVAGEAPAAAPA 189

Length = 633

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 40  LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97
           + K FV+ GD ++  Q L  +++ K   EI +   G V ++L   G+ V+ G+ L  +
Sbjct: 81  VYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVI 138

Length = 140

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 47.0 bits (113), Expect = 3e-07
 Identities = 20/58 (34%), Positives = 36/58 (62%)

Query: 40 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97
          ++K  VKEGD++E  QPL  +++ K   E+T+   G V ++L   G+ V+ G+ L+ +
Sbjct: 10 VVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)

Query: 34  GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET 93
           G  E E+ +  VK GD++E  Q L  V+ DKA++E+ S   G V ++    G+ V+ G  
Sbjct: 11  GADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGAL 70

Query: 94  LLKLVV---GDSAVPTPSSDVLESVKPPGS 120
           ++          A P  + +  E+      
Sbjct: 71  IMIFESADGAADAAPAQAEEKKEAAPAAAP 100

Length = 633

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 38/73 (52%)

Query: 25 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAP 84
           + +    + + +  ++KW  K GD++++   L  +++ KAT ++ +   G V ++L   
Sbjct: 1  TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60

Query: 85 GNIVKVGETLLKL 97
          G  V+    L+K+
Sbjct: 61 GTKVEGDTPLVKI 73

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 32  GEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVG 91
           G  + E ++  W V+EGDE+E+   L  V++DK T E+ +   G + + +   G  + VG
Sbjct: 11  GLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVG 70

Query: 92  ETLLKLVVGDSAVP 105
             L   VV D+ V 
Sbjct: 71  ALL--AVVADAEVS 82

Length = 371

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 37  ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK 96
           E E+++  VK GD++E  Q L  ++SDKA++E+ S   G + ++    G+ + VG  +  
Sbjct: 13  EGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIAT 72

Query: 97  LVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDV 156
           L VG  A     ++  +   P  +  +P             A P     + +  + + D+
Sbjct: 73  LEVGAGA--QAQAEAKKEAAPAPTAGAPAPAAQAQ------AAPAAGQSSGVQEVTVPDI 124

Query: 157 DATGK 161
               K
Sbjct: 125 GDIEK 129

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 37  ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG-NIVKVGETLL 95
           E  L KW  KEGD+++    +  +++DKAT+E+ +  +G + ++L   G   VKV  T +
Sbjct: 16  EGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVN-TPI 74

Query: 96  KLVVGD----SAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTV 142
            +++ +    S      +   E+     +  +  +           A P  
Sbjct: 75  AVLLEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAA 125

Length = 464

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 9/83 (10%)

Query: 16   ADLPASGI-VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYK 74
            ADLP     V+   A            K  V+ GD +E  QPL  +++ K  + +++   
Sbjct: 1126 ADLPEGAEQVESEYAGN--------FWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVA 1177

Query: 75   GKVAQLLHAPGNIVKVGETLLKL 97
            GKV ++L  PG++V  G+ +  L
Sbjct: 1178 GKVTKILCQPGDMVDAGDIVAVL 1200

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|181304 PRK08225, PRK08225, acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 42 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97
          K  VK GD +EE Q +  ++S K  I I +   G V ++    G+ V  G+ LL++
Sbjct: 14 KIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEI 69

Length = 70

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	100.0
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	100.0
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	100.0
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	100.0
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	100.0
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
PRK13757	219	chloramphenicol acetyltransferase; Provisional	99.94
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	99.94
COG4845	219	Chloramphenicol O-acetyltransferase [Defense mecha	99.86
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.74
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.73
PRK06748	83	hypothetical protein; Validated	99.63
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.53
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.5
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.49
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.48
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.43
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.4
PF02817	39	E3_binding: e3 binding domain; InterPro: IPR004167	99.4
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.35
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.33
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.29
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.28
PRK07051	80	hypothetical protein; Validated	99.25
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.23
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.22
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.21
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.19
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	99.16
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.14
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.09
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.95
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.92
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.91
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.87
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.81
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.8
PRK12999	1146	pyruvate carboxylase; Reviewed	98.7
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.56
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.28
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.17
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	98.05
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	97.93
PRK09783	409	copper/silver efflux system membrane fusion protei	97.83
PRK00624	114	glycine cleavage system protein H; Provisional	97.8
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	97.78
PRK13380	144	glycine cleavage system protein H; Provisional	97.74
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	97.73
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	97.68
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	97.68
PRK01202	127	glycine cleavage system protein H; Provisional	97.65
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	97.61
PRK10476	346	multidrug resistance protein MdtN; Provisional	97.6
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.43
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.38
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	97.37
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.34
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.34
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	97.31
PRK09859	385	multidrug efflux system protein MdtE; Provisional	97.27
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.26
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.11
PRK11578	370	macrolide transporter subunit MacA; Provisional	97.08
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	96.94
PRK12784	84	hypothetical protein; Provisional	96.9
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	96.86
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	96.73
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	96.72
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	96.71
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	96.65
PRK06748	83	hypothetical protein; Validated	96.22
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.68
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	95.62
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	95.57
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	95.48
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	95.3
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	95.3
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	95.2
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	95.0
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	94.97
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	94.68
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	94.44
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	94.41
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	94.26
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	94.21
PF13437	105	HlyD_3: HlyD family secretion protein	94.18
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	94.11
COG3608	331	Predicted deacylase [General function prediction o	93.85
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	93.78
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	93.26
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	93.24
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	93.2
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	92.92
PF00529	305	HlyD: HlyD family secretion protein the correspond	92.87
PRK07051	80	hypothetical protein; Validated	92.85
PRK10476	346	multidrug resistance protein MdtN; Provisional	92.65
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	92.27
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	91.75
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	91.53
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	91.38
PRK14042	596	pyruvate carboxylase subunit B; Provisional	91.34
PRK11578	370	macrolide transporter subunit MacA; Provisional	91.24
PRK09859	385	multidrug efflux system protein MdtE; Provisional	91.18
PF00529	305	HlyD: HlyD family secretion protein the correspond	91.13
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.04
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	90.94
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	90.81
PF07247	480	AATase: Alcohol acetyltransferase; InterPro: IPR01	90.75
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	90.63
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	90.44
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	90.38
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	90.21
TIGR02946	446	acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b	89.9
PRK15136	390	multidrug efflux system protein EmrA; Provisional	89.89
PRK03598	331	putative efflux pump membrane fusion protein; Prov	89.68
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	89.55
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	89.48
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	88.29
PRK09439	169	PTS system glucose-specific transporter subunit; P	88.25
PF13437	105	HlyD_3: HlyD family secretion protein	88.23
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	87.92
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	87.58
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	87.54
PRK09282	592	pyruvate carboxylase subunit B; Validated	87.52
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	87.45
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	87.42
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	87.35
PRK09783	409	copper/silver efflux system membrane fusion protei	87.31
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	87.28
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	86.97
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	86.55
COG2190	156	NagE Phosphotransferase system IIA components [Car	85.99
COG4072	161	Uncharacterized protein conserved in archaea [Func	85.3
PRK05035	695	electron transport complex protein RnfC; Provision	85.27
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	85.17
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	85.04
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	84.97
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	84.83
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	84.81
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	84.36
PRK14040	593	oxaloacetate decarboxylase; Provisional	82.96
PRK05305	206	phosphatidylserine decarboxylase; Provisional	82.84
PF00668	301	Condensation: Condensation domain; InterPro: IPR00	82.61
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	82.21
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	82.11
PRK12999	1146	pyruvate carboxylase; Reviewed	82.03
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	82.01
PF02749	88	QRPTase_N: Quinolinate phosphoribosyl transferase,	81.63
PRK12784	84	hypothetical protein; Provisional	81.36
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	81.07
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	81.01
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	81.0

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=2.1e-90  Score=708.80  Aligned_cols=403  Identities=26%  Similarity=0.479  Sum_probs=337.9

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA  103 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~~  103 (447)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+..++.
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~   82 (407)
T PRK05704          3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAA   82 (407)
T ss_pred             eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999865432


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCC
Q 013218          104 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGP  183 (447)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~  183 (447)
                      ..........++..+..... ++.+ ......+.+||+||+||+||||||++|+|||++|||+++||++|+.+....+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~  160 (407)
T PRK05704         83 GAAAAAAAAAAAAAAAPAQA-QAAA-AAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA  160 (407)
T ss_pred             cccCCCCCCCCCCCCCCCCC-CCCc-cCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence            11100000000000000000 0001 011123679999999999999999999999999999999999997431100000


Q ss_pred             CCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhccc
Q 013218          184 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNN  262 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~~  262 (447)
                      +.+.      ..     ...+..  .  .....+.+|++++||.|+++|++| +++||||+..++|+|.|+++|+++++.
T Consensus       161 ~~~~------~~-----~~~~~~--~--~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~  225 (407)
T PRK05704        161 PAAA------AP-----AAAPAP--L--GARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDA  225 (407)
T ss_pred             CCCC------CC-----cCCCcc--c--cCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhh
Confidence            0000      00     000000  0  011235689999999999999999 489999999999999999999999865


Q ss_pred             CC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHH
Q 013218          263 NS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSR  341 (447)
Q Consensus       263 ~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~  341 (447)
                      +. ..|.++|+++||+||+++||++||.||++|+++  ++++++++|||+||++++||++|||++++++|+.+|++++++
T Consensus       226 ~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~--~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~  303 (407)
T PRK05704        226 FEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGD--DIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAE  303 (407)
T ss_pred             hHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCC--eEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHH
Confidence            43 347899999999999999999999999999865  789999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccC
Q 013218          342 LQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD  421 (447)
Q Consensus       342 l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvD  421 (447)
                      |++++|+|+|+++|++||||||||+|++|+.+|+|||||||+|||++|++.++|++. ||++++|++|+|||+||||++|
T Consensus       304 l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~-~g~i~~r~~~~lsls~DHRviD  382 (407)
T PRK05704        304 LAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAV-NGQIVIRPMMYLALSYDHRIID  382 (407)
T ss_pred             HHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEE-CCEEEEEEEEEEEEEechhhhC
Confidence            999999999999999999999999999999999999999999999999999999985 7899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218          422 GATVAKFCNEWKQLIENPELLLLQM  446 (447)
Q Consensus       422 G~~aa~Fl~~l~~~Le~P~~ll~~~  446 (447)
                      |+++|+||++|+++||||+.||++|
T Consensus       383 Ga~aa~Fl~~l~~~le~p~~ll~~~  407 (407)
T PRK05704        383 GKEAVGFLVTIKELLEDPERLLLDL  407 (407)
T ss_pred             cHHHHHHHHHHHHHhhCHHHHhhcC
Confidence            9999999999999999999999875

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=2.8e-90  Score=706.28  Aligned_cols=401  Identities=26%  Similarity=0.487  Sum_probs=337.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA  103 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~~  103 (447)
                      ++|+||+||++|++|+|++|+|++||.|++||+|++|||||+.++++||++|+|.++++++|+.|++|++|++|+..++.
T Consensus         1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~   80 (403)
T TIGR01347         1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA   80 (403)
T ss_pred             CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999854321


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCC
Q 013218          104 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGP  183 (447)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~  183 (447)
                      .+...+...+++......... ..+. ...+++.+||+||+||+|+||||+.|+|||++|||+++||++|+......+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~  158 (403)
T TIGR01347        81 TAAPPAKSGEEKEETPAASAA-AAPT-AAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAP  158 (403)
T ss_pred             cccccccccCCCCCCCCCCCC-CCCc-CccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCC
Confidence            110000000000000000000 0010 11234679999999999999999999999999999999999997431100000


Q ss_pred             CCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhccc
Q 013218          184 STASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNN  262 (447)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~  262 (447)
                      .  .    + .+     .+.+..     .....+.+||+++||+|+++|++|+ ++||||+..++|+|+|+++|+++++.
T Consensus       159 ~--~----~-~~-----~~~~~~-----~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~  221 (403)
T TIGR01347       159 A--P----A-AA-----AKAPAN-----FTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEE  221 (403)
T ss_pred             C--C----C-cc-----cCCccc-----cCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhh
Confidence            0  0    0 00     000000     0112356899999999999999995 89999999999999999999999865


Q ss_pred             CC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHH
Q 013218          263 NS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSR  341 (447)
Q Consensus       263 ~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~  341 (447)
                      +. ..|.++|+++||+||+++||++||+||++|+++  ++++++++|||+||++++||++|||++++++|+.+|++++++
T Consensus       222 ~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~--~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~  299 (403)
T TIGR01347       222 FEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGD--DIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIAD  299 (403)
T ss_pred             hHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCC--EEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHH
Confidence            43 347899999999999999999999999999864  799999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccC
Q 013218          342 LQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD  421 (447)
Q Consensus       342 l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvD  421 (447)
                      |++++|+|+|+++|++||||||||+|++|+.+|+|||||||+|||++|++.++|++. ||++++|++|+|||+||||++|
T Consensus       300 l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~-~g~i~~r~~m~lsLt~DHRviD  378 (403)
T TIGR01347       300 LGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAV-NGQIEIRPMMYLALSYDHRLID  378 (403)
T ss_pred             HHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEE-CCeEEEEEEEEEEEEecchhhC
Confidence            999999999999999999999999999999999999999999999999999999995 6899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218          422 GATVAKFCNEWKQLIENPELLLLQM  446 (447)
Q Consensus       422 G~~aa~Fl~~l~~~Le~P~~ll~~~  446 (447)
                      |+++|+||++|+++||+|..||++|
T Consensus       379 Ga~aa~Fl~~l~~~le~p~~ll~~~  403 (403)
T TIGR01347       379 GKEAVTFLVTIKELLEDPRRLLLDL  403 (403)
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHhcC
Confidence            9999999999999999999999886

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=1.9e-89  Score=704.09  Aligned_cols=416  Identities=70%  Similarity=1.057  Sum_probs=341.0

Q ss_pred             EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCCCCC
Q 013218           26 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSAVP  105 (447)
Q Consensus        26 ~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~~~~  105 (447)
                      ++||+||++|.||+|++|+|++||.|++||+|+++||||+.++++|+.+|+|.++++++|+.+++|++|+.|+.+++...
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~   80 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL   80 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999975432211


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCCCC
Q 013218          106 TPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPST  185 (447)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~  185 (447)
                      .....++++........+++... ....+.+++||++|+||++|||||+.|+|||++|||+++||++|++.......+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~  159 (416)
T PLN02528         81 RSDSLLLPTDSSNIVSLAESDER-GSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSS  159 (416)
T ss_pred             cccCCCCCCCCccCCCCCCCCcc-ccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhcccccccccc
Confidence            10000000000000000000000 11112367999999999999999999999999999999999999853221111110


Q ss_pred             ccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhcCcceEEEEeeeechHHHHHHHHhcccCCC
Q 013218          186 ASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSD  265 (447)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~  265 (447)
                      ++.+..+...    ..+.+. ..........+.+||+++||.|+++|++|+++||||+..++|+|+|+++|+++++....
T Consensus       160 ~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~~~~eid~~~l~~~r~~~~~~~~~  234 (416)
T PLN02528        160 AEEATIAEQE----EFSTSV-STPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHYVEEINVDALVELKASFQENNTD  234 (416)
T ss_pred             cccccCCccc----cccccC-CCcccccCcceeeccchHHHHHHHHHHhcCcCCeEEEEEEEEhHHHHHHHHHHhhhhhh
Confidence            0000000000    000000 00000111245689999999999999999999999999999999999999999865445


Q ss_pred             CCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHH
Q 013218          266 PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQL  345 (447)
Q Consensus       266 ~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~  345 (447)
                      .|.++||++||+||+++||++||.||++|++++..+++|+++||||||++++||++|||++++++++.+|++++++|+++
T Consensus       235 ~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~  314 (416)
T PLN02528        235 PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHL  314 (416)
T ss_pred             cCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999876557999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHH
Q 013218          346 AKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATV  425 (447)
Q Consensus       346 ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~a  425 (447)
                      +|+|+|+++|++||||||||+|++|+.+|+|||||||+|||++|++.++|++.+||++++|++|+|||+||||+|||+++
T Consensus       315 ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~a  394 (416)
T PLN02528        315 AAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATV  394 (416)
T ss_pred             HHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHH
Confidence            99999999999999999999999999999999999999999999999999997678999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCHHHhhhcCC
Q 013218          426 AKFCNEWKQLIENPELLLLQMR  447 (447)
Q Consensus       426 a~Fl~~l~~~Le~P~~ll~~~~  447 (447)
                      ++||++|+++||||+.||+++|
T Consensus       395 a~Fl~~lk~~le~P~~lll~~~  416 (416)
T PLN02528        395 ARFCNEWKSYVEKPELLMLHMR  416 (416)
T ss_pred             HHHHHHHHHHHhCHHHHHhccC
Confidence            9999999999999999999986

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=1.3e-88  Score=708.76  Aligned_cols=415  Identities=28%  Similarity=0.444  Sum_probs=343.7

Q ss_pred             cccccccccccccCCCCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeC
Q 013218            4 MVSRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA   83 (447)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~   83 (447)
                      |+.+|.|++++.+  +.  -++++||+||++|++|+|++|++++||.|++||+||+|||||++++++|+.+|+|.+|+++
T Consensus        97 ~~~~~~~~~~~~~--~~--~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~  172 (539)
T PLN02744         97 MQSARGFSSSSDL--PP--HQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG  172 (539)
T ss_pred             ccccccccccccC--CC--CceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEec
Confidence            5667888866655  44  4679999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-eeecccEEEEEecCCCCCC-----CC----CCC--CC--CCCCCCCC---CCCC-CC----CCCc-C-cCCCccCC
Q 013218           84 PGN-IVKVGETLLKLVVGDSAVP-----TP----SSD--VL--ESVKPPGS---ENSP-DS----KLNK-D-TVGGVLAT  139 (447)
Q Consensus        84 ~g~-~v~~G~~l~~i~~~~~~~~-----~~----~~~--~~--~~~~~~~~---~~~~-~~----~~~~-~-~~~~~~as  139 (447)
                      +|+ .|++|++|+++..++++.+     .+    .+.  .+  .++.+...   ..++ +.    .+.. . ...++++|
T Consensus       173 eG~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~AS  252 (539)
T PLN02744        173 DGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFAS  252 (539)
T ss_pred             CCCcccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCC
Confidence            996 7999999998854322210     00    000  00  00000000   0000 00    0000 0 11246799


Q ss_pred             HHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCcee
Q 013218          140 PTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTV  219 (447)
Q Consensus       140 P~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (447)
                      |+||+||+||||||+.|+||||+|||+++||++|+.....  .++ ++. .   .       +..    .  .....+++
T Consensus       253 P~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~--~~~-~~~-~---~-------~~~----~--~~~~~~~v  312 (539)
T PLN02744        253 PLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGK--GAT-APP-S---T-------DSK----A--PALDYTDI  312 (539)
T ss_pred             chhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhcccc--ccC-CCC-C---c-------ccC----C--CCCccccc
Confidence            9999999999999999999999999999999999843111  000 000 0   0       000    0  00013568


Q ss_pred             cCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceEEccC
Q 013218          220 PLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE  297 (447)
Q Consensus       220 ~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~  297 (447)
                      |++++||.|+++|++| +++||||++.++|+|+|+++|++++.... ..|.++|+++||+||+++||++||+||++|+++
T Consensus       313 pls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~  392 (539)
T PLN02744        313 PNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDD  392 (539)
T ss_pred             cchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccC
Confidence            9999999999999999 58999999999999999999999986543 347899999999999999999999999999865


Q ss_pred             CcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecC-CCCCccccc
Q 013218          298 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIG-AIGGKFGAP  376 (447)
Q Consensus       298 ~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg-~~G~~~~~p  376 (447)
                        .+++++++||||||++++||++|||++++++++.+|++++++|+++||+|+|+++|++||||||||+| +||+.+|+|
T Consensus       393 --~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftp  470 (539)
T PLN02744        393 --YIRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCA  470 (539)
T ss_pred             --cEEEeCCcceEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeec
Confidence              79999999999999999999999999999999999999999999999999999999999999999998 899999999


Q ss_pred             ccCCCceeEEEecceEEeeEEc-CCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          377 LLNLPEVAIIAMGRIEKVPRLS-DDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       377 ii~~pq~ail~vG~i~~~p~~~-~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      ||||||+|||++|++.++|++. .||++++|++|+|||+||||+|||+++++||++|+++||||+.||+
T Consensus       471 IInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll  539 (539)
T PLN02744        471 IINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL  539 (539)
T ss_pred             cccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence            9999999999999999999984 5789999999999999999999999999999999999999998875

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=3.2e-87  Score=714.48  Aligned_cols=414  Identities=27%  Similarity=0.433  Sum_probs=334.2

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218           23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  102 (447)
Q Consensus        23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~  102 (447)
                      .++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|+.|+..++
T Consensus       135 ~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~  214 (590)
T TIGR02927       135 ATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAGA  214 (590)
T ss_pred             ceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999975432


Q ss_pred             CCCC-----CCCCC------CCCCCCCC------CC------CCCCC----CCCc-C-cCCCccCCHHHHHHHHHhCCCC
Q 013218          103 AVPT-----PSSDV------LESVKPPG------SE------NSPDS----KLNK-D-TVGGVLATPTVRNLAKLYGINL  153 (447)
Q Consensus       103 ~~~~-----~~~~~------~~~~~~~~------~~------~~~~~----~~~~-~-~~~~~~asP~aR~lA~e~gidl  153 (447)
                      ..+.     ....+      .+.+....      ..      .+...    .+.. . ...++++||+||+||+||||||
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl  294 (590)
T TIGR02927       215 AAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDL  294 (590)
T ss_pred             ccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCH
Confidence            2110     00000      00000000      00      00000    0000 0 1124789999999999999999


Q ss_pred             CCccCCCCCCceehHHHHHHHHhcCCC-CCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHH
Q 013218          154 YDVDATGKDGRVLKEDVLKYAVQKGAA-DGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTM  232 (447)
Q Consensus       154 ~~v~gtG~~GrI~~~DV~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m  232 (447)
                      +.|+|||++|||+++||++|+...... ..+..+........    ...+.+...+ .......+.+||+++||.|+++|
T Consensus       295 ~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~pls~~rk~ia~~m  369 (590)
T TIGR02927       295 NSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAA----AAAASASPAP-AKAHLRGTTQKANRIREITAKKT  369 (590)
T ss_pred             HHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccc----cccccCCCcc-ccccccCceeeccHHHHHHHHHH
Confidence            999999999999999999998532111 11110000000000    0000000000 00011245689999999999999


Q ss_pred             HHhc-CcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEE
Q 013218          233 SMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIG  310 (447)
Q Consensus       233 ~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~ig  310 (447)
                      ++|+ ++||||++.++|||+|+++|+++|+.+. ..|.++|+++||+||+++||++||.||++|++++++|++|+++|||
T Consensus       370 ~~S~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnig  449 (590)
T TIGR02927       370 REALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLG  449 (590)
T ss_pred             HHHhccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEE
Confidence            9995 7899999999999999999999986543 3478999999999999999999999999998766689999999999


Q ss_pred             eEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecc
Q 013218          311 IAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGR  390 (447)
Q Consensus       311 iav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~  390 (447)
                      |||++++||++|||+++++++|.+|++++++|+++||+|+|+++||+||||||||||++|+++|+||||+||+|||++|+
T Consensus       450 vAv~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~  529 (590)
T TIGR02927       450 FAVDTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGA  529 (590)
T ss_pred             EEEECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeEEc--CCC--ceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHH
Q 013218          391 IEKVPRLS--DDG--NVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPEL  441 (447)
Q Consensus       391 i~~~p~~~--~dG--~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~  441 (447)
                      +.++|++.  ++|  .+++|++|+|||+||||+|||+++++||++|+++||||..
T Consensus       530 i~~~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~  584 (590)
T TIGR02927       530 IVKRPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAF  584 (590)
T ss_pred             ceEEEEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCccc
Confidence            99999985  344  3899999999999999999999999999999999999873

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=6e-86  Score=699.68  Aligned_cols=413  Identities=27%  Similarity=0.427  Sum_probs=337.5

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218           23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  102 (447)
Q Consensus        23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~  102 (447)
                      .++|+||++|+ |++|+|++|+|++||.|++||+|++|||||+.++|+||++|+|.++++++|+.|++|++|+.|...++
T Consensus       116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~  194 (546)
T TIGR01348       116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS  194 (546)
T ss_pred             ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence            47999999999 99999999999999999999999999999999999999999999999999999999999999975432


Q ss_pred             CCCCC-CCCCC----CCCCCC----CCCCC--CCCCCC---c-C-cCCCc-cCCHHHHHHHHHhCCCCCCccCCCCCCce
Q 013218          103 AVPTP-SSDVL----ESVKPP----GSENS--PDSKLN---K-D-TVGGV-LATPTVRNLAKLYGINLYDVDATGKDGRV  165 (447)
Q Consensus       103 ~~~~~-~~~~~----~~~~~~----~~~~~--~~~~~~---~-~-~~~~~-~asP~aR~lA~e~gidl~~v~gtG~~GrI  165 (447)
                      ..... ...++    +.+...    ...+.  .+..+.   . . ...++ ++||+||+||+||||||+.|.|||++|||
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI  274 (546)
T TIGR01348       195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI  274 (546)
T ss_pred             CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence            21100 00000    000000    00000  000000   0 0 11234 69999999999999999999999999999


Q ss_pred             ehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEE
Q 013218          166 LKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYV  244 (447)
Q Consensus       166 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~  244 (447)
                      +++||++|+.+... .+++. +.+....    ....+..+... ......++.+||+++||.|+++|++| +++||||++
T Consensus       275 ~~~DV~~~~~~~~~-~~~~~-~~~~~~~----~~~~~~~~~~~-~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~  347 (546)
T TIGR01348       275 LREDVQRFVKEPSV-RAQAA-AASAAGG----APGALPWPNVD-FSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHF  347 (546)
T ss_pred             eHHHHHHHhhcccc-ccCcc-cccccCC----ccccCCCcccc-ccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEE
Confidence            99999999853211 01100 0000000    00000000000 00011246689999999999999999 589999999


Q ss_pred             eeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeee
Q 013218          245 EEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNI  324 (447)
Q Consensus       245 ~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI  324 (447)
                      .++|||+|+++|+++++.+...|.++||++||+||+++||++||.||++|++++.++++++++||||||++++||++|||
T Consensus       348 ~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi  427 (546)
T TIGR01348       348 DKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVI  427 (546)
T ss_pred             EEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCc
Confidence            99999999999999987655567899999999999999999999999999876557999999999999999999999999


Q ss_pred             eccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCcee
Q 013218          325 KNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY  404 (447)
Q Consensus       325 ~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~  404 (447)
                      ++++++|+.+|++++++|++++|+|+|+++|++||||||||+|++|+.+|+||||+||+|||++|++.++|+++ +|+++
T Consensus       428 ~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~-~~~~~  506 (546)
T TIGR01348       428 KDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWN-GKEFE  506 (546)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEE-CCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999985 67899


Q ss_pred             eEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          405 PSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       405 ~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      +|++|+|||+||||++||+++++||++|+++||||..||+
T Consensus       507 ~~~~m~ltls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~  546 (546)
T TIGR01348       507 PRLMLPLSLSYDHRVIDGADAARFTTYICESLADIRRLLL  546 (546)
T ss_pred             EEEEEEEeEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence            9999999999999999999999999999999999998875

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=1.1e-85  Score=679.70  Aligned_cols=403  Identities=28%  Similarity=0.446  Sum_probs=331.8

Q ss_pred             EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCe-eecccEEEEEecCCCCC
Q 013218           26 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLVVGDSAV  104 (447)
Q Consensus        26 ~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~-v~~G~~l~~i~~~~~~~  104 (447)
                      ++||++|++|.+|+|.+|++++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|++|+..++..
T Consensus         2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~   81 (435)
T TIGR01349         2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDV   81 (435)
T ss_pred             cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999 99999999997543221


Q ss_pred             C-C--------C--CCCC-CCCCC-C---CCCCCCC--CC-CCC---c---C-cCCCccCCHHHHHHHHHhCCCCCCccC
Q 013218          105 P-T--------P--SSDV-LESVK-P---PGSENSP--DS-KLN---K---D-TVGGVLATPTVRNLAKLYGINLYDVDA  158 (447)
Q Consensus       105 ~-~--------~--~~~~-~~~~~-~---~~~~~~~--~~-~~~---~---~-~~~~~~asP~aR~lA~e~gidl~~v~g  158 (447)
                      + .        .  .+.. +..+. .   +....++  .. .+.   .   . ...++++||+||+||+||||||+.|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g  161 (435)
T TIGR01349        82 ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG  161 (435)
T ss_pred             ccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence            1 0        0  0000 00000 0   0000000  00 000   0   0 112467999999999999999999999


Q ss_pred             CCCCCceehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cC
Q 013218          159 TGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AK  237 (447)
Q Consensus       159 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~  237 (447)
                      ||++|||+++||++|+..... .++.. . +.  ..  +  .....   ..+......+.+||+++||.|+++|++| ++
T Consensus       162 tG~~GrI~~~DV~~~~~~~~~-~~~~~-~-~~--~~--~--~~~~~---~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~  229 (435)
T TIGR01349       162 SGPNGRIVKKDIESFVPQSPA-SANFQ-A-AA--TT--P--ATKKA---AAPVSTGSYEDVPLSNIRKIIAKRLLESKQT  229 (435)
T ss_pred             CCCCCceeHHHHHHHHhcccc-cCCCc-c-cc--cc--c--ccccc---CCCccCCcceeecccHHHHHHHHHHHHHHhh
Confidence            999999999999999853111 11100 0 00  00  0  00000   0000111245689999999999999998 58


Q ss_pred             cceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCC
Q 013218          238 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH  317 (447)
Q Consensus       238 iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~  317 (447)
                      +||||++.++|+|+|+++|+++++.... |.++||++||+||+++||++||.||++|+++  ++++|+++||||||++++
T Consensus       230 ip~~~~~~evd~t~l~~~r~~~~~~~~~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~--~i~~~~~vnigvAv~~~~  306 (435)
T TIGR01349       230 IPHYYVSIECNVDKLLALRKELNAMASE-VYKLSVNDFIIKASALALREVPEANSSWTDN--FIRRYKNVDISVAVATPD  306 (435)
T ss_pred             CCeEEEEEEEEhHHHHHHHHHHHhhhhc-CCcccHHHHHHHHHHHHHHhCcHhheEEeCC--eEEEeCCeeEEEEEECCC
Confidence            9999999999999999999999865433 7899999999999999999999999999864  799999999999999999


Q ss_pred             CeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEE
Q 013218          318 GLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRL  397 (447)
Q Consensus       318 Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~  397 (447)
                      ||++|||++++++|+.+|++++++|++++|+|+|+++|++||||||||+|++|+.+|+||||+||+|||++|++.++|++
T Consensus       307 GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~  386 (435)
T TIGR01349       307 GLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVV  386 (435)
T ss_pred             CeEECCCCCcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCc---eeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          398 SDDGN---VYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       398 ~~dG~---i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      . +|+   +++|++|+|||+||||++||+++++||++|+++||+|+.||+
T Consensus       387 ~-~~~~~~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll  435 (435)
T TIGR01349       387 D-NDEEKGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL  435 (435)
T ss_pred             e-CCccceeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence            5 455   999999999999999999999999999999999999998875

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=1.6e-83  Score=657.37  Aligned_cols=402  Identities=32%  Similarity=0.562  Sum_probs=342.7

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218           23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  102 (447)
Q Consensus        23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~  102 (447)
                      .++|+||+||++|+||+|++|+|++||.|++||+|+||||||+++||+||++|+|.++++++|++|++|++|++|...++
T Consensus         2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~   81 (404)
T COG0508           2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGA   81 (404)
T ss_pred             CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCC
Q 013218          103 AVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADG  182 (447)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~  182 (447)
                      ..++..... +++.......++...+ ........+||++|+||+|+||||+.+.|||++|||+++|+++++...   ..
T Consensus        82 ~~~a~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~---~~  156 (404)
T COG0508          82 DAPAAAEAP-PEPAAAAPASAPATAA-SAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEK---AA  156 (404)
T ss_pred             cccccCccc-CCccccCcCcccCccc-cccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccc---cc
Confidence            431111100 0000000000000000 001156789999999999999999999999999999999999998543   00


Q ss_pred             CCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhcc
Q 013218          183 PSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQN  261 (447)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~  261 (447)
                      +..+....          .+     .........+++|++++||.|+.+|..| .++||++...++|++.|+++|++++.
T Consensus       157 ~~~~~~~~----------~~-----~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~  221 (404)
T COG0508         157 AAAAPAPA----------AA-----APASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKE  221 (404)
T ss_pred             cccccccc----------cC-----CcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhh
Confidence            10000000          00     0002334568899999999999999998 47999999999999999999999998


Q ss_pred             cCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHH
Q 013218          262 NNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSR  341 (447)
Q Consensus       262 ~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~  341 (447)
                      .+...|.++||++|++||++.||+++|.+|+++++++..+++++++|||+||++++||++|||++++++++.+|++++.+
T Consensus       222 ~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~  301 (404)
T COG0508         222 EFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKD  301 (404)
T ss_pred             hhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHH
Confidence            76655899999999999999999999999988876422799999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccC
Q 013218          342 LQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD  421 (447)
Q Consensus       342 l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvD  421 (447)
                      |..++|+|+|.++|++||||||||+|++|...|+|+||+||++||++|++.++|+|. +|++++|++|+|+|+||||++|
T Consensus       302 la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~-~~~i~~~~mm~lsls~DHRviD  380 (404)
T COG0508         302 LAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVV-GGEIVVRPMMYLSLSYDHRVID  380 (404)
T ss_pred             HHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEe-cCceeeEeeEeecccccccccc
Confidence            999999999999999999999999999999999999999999999999999999995 5599999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhCHHHhhhc
Q 013218          422 GATVAKFCNEWKQLIENPELLLLQ  445 (447)
Q Consensus       422 G~~aa~Fl~~l~~~Le~P~~ll~~  445 (447)
                      |+++++||..++++||||..||++
T Consensus       381 Ga~aa~Fl~~ik~~le~p~~ll~~  404 (404)
T COG0508         381 GAEAARFLVALKELLEDPERLLLE  404 (404)
T ss_pred             cHHHHHHHHHHHHHhcChhhhhcC
Confidence            999999999999999999999875

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=2.5e-82  Score=683.66  Aligned_cols=414  Identities=29%  Similarity=0.466  Sum_probs=335.0

Q ss_pred             ceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           22 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..++|+||+||  |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|..++
T Consensus       205 ~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~  282 (633)
T PRK11854        205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEG  282 (633)
T ss_pred             CceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence            46799999999  8999999999999999999999999999999999999999999999999999999999999997543


Q ss_pred             CCCC-CCCCC-C-CCCCC---CCCCCCCCCCCC-C----cCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHH
Q 013218          102 SAVP-TPSSD-V-LESVK---PPGSENSPDSKL-N----KDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV  170 (447)
Q Consensus       102 ~~~~-~~~~~-~-~~~~~---~~~~~~~~~~~~-~----~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV  170 (447)
                      +... ...+. . .+.+.   ......+++... .    .....++++||+||+||++|||||+.|+|||++|||+++||
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV  362 (633)
T PRK11854        283 AAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDV  362 (633)
T ss_pred             CCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHH
Confidence            3211 11000 0 00000   000000000000 0    01112467999999999999999999999999999999999


Q ss_pred             HHHHHhcCC-CCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhc-CcceEEEEeeee
Q 013218          171 LKYAVQKGA-ADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEIN  248 (447)
Q Consensus       171 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vD  248 (447)
                      ++|+..... .++.+.++.+..+.+..    .+.+.  .........+++||+++||.|+++|.+|+ ++|||+++.++|
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD  436 (633)
T PRK11854        363 QAYVKDAVKRAEAAPAAAAAGGGGPGL----LPWPK--VDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKAD  436 (633)
T ss_pred             HHHhhccccccccCCcccccccccccc----ccccc--ccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEE
Confidence            999853211 00000000000000000    00000  00000112356899999999999999994 899999999999


Q ss_pred             chHHHHHHHHhcccCC--CCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeec
Q 013218          249 CDALVKLKASFQNNNS--DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKN  326 (447)
Q Consensus       249 vt~l~~~~k~~~~~~~--~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~  326 (447)
                      +|.|+++|+++++...  ..|.++|+++||+||+++||++||+||++|+++++++++|+++||||||++++||++|||++
T Consensus       437 ~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~  516 (633)
T PRK11854        437 ITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKD  516 (633)
T ss_pred             cHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECC
Confidence            9999999998875322  34789999999999999999999999999986555899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeE
Q 013218          327 VQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPS  406 (447)
Q Consensus       327 a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r  406 (447)
                      ++++++.+|+++++++++++|+|+|.++|+++|||||||+||+|+++|+|||||||+|||++|++.++|+++ +|.+++|
T Consensus       517 a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~-~~~~~~r  595 (633)
T PRK11854        517 VNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWN-GKEFAPR  595 (633)
T ss_pred             CccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEE-CCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999985 6789999


Q ss_pred             cEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          407 PIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       407 ~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      ++|+|||+||||++||+++++||++|+++||+|..|||
T Consensus       596 ~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~  633 (633)
T PRK11854        596 LMLPLSLSYDHRVIDGADGARFITIINDRLSDIRRLVL  633 (633)
T ss_pred             EEEEEeEEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence            99999999999999999999999999999999998875

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=1.7e-81  Score=668.60  Aligned_cols=417  Identities=34%  Similarity=0.565  Sum_probs=336.9

Q ss_pred             ceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           22 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      .+.+|+||+||+ |++|+|++|++++||.|++||.|++|||||+.++|+||++|+|.++++++|+.|.+|++|+.+...+
T Consensus       118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~  196 (547)
T PRK11855        118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAA  196 (547)
T ss_pred             CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCC
Confidence            357999999999 9999999999999999999999999999999999999999999999999999999999999997653


Q ss_pred             CCC-CC--CCCCCCC-C--C-CCCCCCCC--CCCC-CC-cCcCCCc-cCCHHHHHHHHHhCCCCCCccCCCCCCceehHH
Q 013218          102 SAV-PT--PSSDVLE-S--V-KPPGSENS--PDSK-LN-KDTVGGV-LATPTVRNLAKLYGINLYDVDATGKDGRVLKED  169 (447)
Q Consensus       102 ~~~-~~--~~~~~~~-~--~-~~~~~~~~--~~~~-~~-~~~~~~~-~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D  169 (447)
                      +.. ..  ....++. .  + ........  ++.. +. ....++. ++||+||+||++|||||+.|+|||++|||+++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D  276 (547)
T PRK11855        197 AAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKED  276 (547)
T ss_pred             CccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHH
Confidence            211 00  0000000 0  0 00000000  0000 00 0112234 799999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhc-CcceEEEEeeee
Q 013218          170 VLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEIN  248 (447)
Q Consensus       170 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vD  248 (447)
                      |++|+........++............+ + .+.+.  ........++.+||+++||.|+++|++|+ ++||||++.++|
T Consensus       277 V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd  352 (547)
T PRK11855        277 VQAFVKGAMSAAAAAAAAAAAAGGGGLG-L-LPWPK--VDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEAD  352 (547)
T ss_pred             HHHHhhcccccccccccccccccccccc-c-cCCcc--ccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEE
Confidence            9999853211101100000000000000 0 00000  00000112456899999999999999995 899999999999


Q ss_pred             chHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccC
Q 013218          249 CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQ  328 (447)
Q Consensus       249 vt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~  328 (447)
                      +|.|+++|+++++.++..|.++||++||+||+++||++||+||++|+++++++++|+++|||+||++++||++|+|++++
T Consensus       353 ~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~  432 (547)
T PRK11855        353 ITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVD  432 (547)
T ss_pred             ChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCc
Confidence            99999999999865555688999999999999999999999999998655589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcE
Q 013218          329 SLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPI  408 (447)
Q Consensus       329 ~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~  408 (447)
                      ++++.+|+++++++++++|+|+|.++|+++|||+|||+||+|+++|+|+|||||+|||++|++.++|++ .+|.+..|++
T Consensus       433 ~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~-~~~~~~~r~~  511 (547)
T PRK11855        433 KKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVW-DGKEFVPRLM  511 (547)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeee-eCCEEEEEeE
Confidence            999999999999999999999999999999999999999999999999999999999999999999976 4778899999


Q ss_pred             EEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          409 MTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      |+|||+||||+|||+|+++||++|+++||+|+.||+
T Consensus       512 m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~  547 (547)
T PRK11855        512 LPLSLSYDHRVIDGATAARFTNYLKQLLADPRRMLL  547 (547)
T ss_pred             EEEeEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999999999999999999999875

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=100.00  E-value=1.5e-81  Score=625.80  Aligned_cols=410  Identities=29%  Similarity=0.446  Sum_probs=342.9

Q ss_pred             CCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCC-CeeecccEEEEEe
Q 013218           20 ASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG-NIVKVGETLLKLV   98 (447)
Q Consensus        20 ~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g-~~v~~G~~l~~i~   98 (447)
                      .+...+|.||.|+.+|++|.|++|.++|||++.+||+||||||||+++++++.++|+|.+|+++|| ..|++|.+|++|.
T Consensus        35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            456677999999999999999999999999999999999999999999999999999999999999 6799999999998


Q ss_pred             cCCCCCCC-----CC------C-CCCCCCCCCC----CCCCCCCCC-----Cc-CcCCCccCCHHHHHHHHHhCCCCCCc
Q 013218           99 VGDSAVPT-----PS------S-DVLESVKPPG----SENSPDSKL-----NK-DTVGGVLATPTVRNLAKLYGINLYDV  156 (447)
Q Consensus        99 ~~~~~~~~-----~~------~-~~~~~~~~~~----~~~~~~~~~-----~~-~~~~~~~asP~aR~lA~e~gidl~~v  156 (447)
                      +.+++..+     ..      + .++++++.+.    +.+++++.+     .. ...+++++||.+|+||.++|+|++.|
T Consensus       115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i  194 (470)
T KOG0557|consen  115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI  194 (470)
T ss_pred             cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence            77654211     10      0 0011111110    001011111     01 11247899999999999999999999


Q ss_pred             cCCCCCCceehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-
Q 013218          157 DATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-  235 (447)
Q Consensus       157 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-  235 (447)
                      .||||+|||++.||++|+...+...+. +..  +..+.       +++.  +.......++++|++.||+.|++||.+| 
T Consensus       195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~-~~~--~~~~~-------~~~~--a~~~~~~~~~diP~s~mr~viakrl~eSk  262 (470)
T KOG0557|consen  195 PGTGPHGRILKGDIEKHVGSGKKKSAK-APK--ASAPP-------PAPA--APPVSLPGYEDIPVSNMRRVIAKRLLESK  262 (470)
T ss_pred             cCcCCCceeehhhHHHhhccccccccc-CCC--ccCCC-------cCcc--CCcCCCCcccccccchhhhhhhhhhhhhh
Confidence            999999999999999999653211111 000  00000       0000  0011122378899999999999999999 


Q ss_pred             cCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEc
Q 013218          236 AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMAT  315 (447)
Q Consensus       236 ~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~  315 (447)
                      ++|||||++.+++++.|+++|+++|  +.+.+.++|+++|++||++.||.++|+.|++|.++ ..|.++++|||++||++
T Consensus       263 ~~IPh~yvt~~~~~d~ll~~r~~ln--~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~-~~i~~~~~VdisvAVat  339 (470)
T KOG0557|consen  263 QTIPHYYVTVDVNLDKLLALREKLN--FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDE-LVIRQLSSVDISVAVAT  339 (470)
T ss_pred             cCCCeEEEeeeeehHHHHHHHHHhh--hcccCcccchhHHHHHHHHHHHhcCCcccceecCC-ccccccCcCChhheeec
Confidence            7899999999999999999999998  45667899999999999999999999999999986 47999999999999999


Q ss_pred             CCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEee
Q 013218          316 QHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVP  395 (447)
Q Consensus       316 ~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p  395 (447)
                      ++||++|+|+|++.+.+.+|++++.+|..+||.++|.+++++||||+||||||||++.|+.+|||||+|||++|+..+..
T Consensus       340 ~~GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~  419 (470)
T KOG0557|consen  340 PNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSV  419 (470)
T ss_pred             cCcccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             EE--cCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          396 RL--SDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       396 ~~--~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      +.  +.++++.....|+|||++|||++||+.+++||+.|+++||||..|||
T Consensus       420 v~d~~~~~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll  470 (470)
T KOG0557|consen  420 VPDANGPEKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL  470 (470)
T ss_pred             ccCCCcccccceeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence            74  55667888999999999999999999999999999999999999986

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=2.4e-80  Score=634.46  Aligned_cols=374  Identities=23%  Similarity=0.436  Sum_probs=305.3

Q ss_pred             CCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           19 PASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        19 ~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      -++.+++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||.|++|++|++|+
T Consensus        87 ~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~  166 (463)
T PLN02226         87 ESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS  166 (463)
T ss_pred             ccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence            34455899999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcC
Q 013218           99 VGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKG  178 (447)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~  178 (447)
                      ..++..+...+.. +.+......... +.+ .....++.++|.+|+.+          .++|+.+               
T Consensus       167 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~v~asp~~r~~~----------~~~~~~~---------------  218 (463)
T PLN02226        167 KSEDAASQVTPSQ-KIPETTDPKPSP-PAE-DKQKPKVESAPVAEKPK----------APSSPPP---------------  218 (463)
T ss_pred             cCCccccccCccC-CCCCCCCCCCCC-ccc-cccccCCCcchhhcccc----------CCCCCCC---------------
Confidence            5432111100000 000000000000 000 00011344555554321          1122111               


Q ss_pred             CCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHH
Q 013218          179 AADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKA  257 (447)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k  257 (447)
                          ++. ..            .. +.. .   .....+.+|++++||.|+++|.+| +++||||++.++|+|+|+++|+
T Consensus       219 ----~~~-~~------------~~-~~~-~---~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~  276 (463)
T PLN02226        219 ----PKQ-SA------------KE-PQL-P---PKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS  276 (463)
T ss_pred             ----Ccc-cc------------cC-ccc-c---cCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHH
Confidence                000 00            00 000 0   001235689999999999999999 5899999999999999999999


Q ss_pred             HhcccCCC-CCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHH
Q 013218          258 SFQNNNSD-PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEIT  336 (447)
Q Consensus       258 ~~~~~~~~-~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~  336 (447)
                      ++++.+.+ .|.++|+++||+||+++||++||+||++|+++  .|++++++||||||++++||++|||++++++++.+|+
T Consensus       277 ~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~--~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa  354 (463)
T PLN02226        277 QYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGD--DIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIE  354 (463)
T ss_pred             HHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCC--EEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHH
Confidence            99865543 47899999999999999999999999999865  7999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEec
Q 013218          337 KELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGAD  416 (447)
Q Consensus       337 ~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~D  416 (447)
                      +++++|++++|+|+|+++|++||||||||+|++|+++|+|||||||+|||++|++.++|++. ||++++|++|+|||+||
T Consensus       355 ~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~-~g~i~~r~~m~lsLs~D  433 (463)
T PLN02226        355 KTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVV-GGSVVPRPMMYVALTYD  433 (463)
T ss_pred             HHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEE-CCEEEEEeEEEEeEecc
Confidence            99999999999999999999999999999999999999999999999999999999999985 78999999999999999


Q ss_pred             ccccChHHHHHHHHHHHHHhhCHHHhhhc
Q 013218          417 HRVLDGATVAKFCNEWKQLIENPELLLLQ  445 (447)
Q Consensus       417 HRvvDG~~aa~Fl~~l~~~Le~P~~ll~~  445 (447)
                      ||++||+++|+||++|+++||+|+.||++
T Consensus       434 HRVIDGa~aA~FL~~lk~~LE~P~~LLl~  462 (463)
T PLN02226        434 HRLIDGREAVYFLRRVKDVVEDPQRLLLD  462 (463)
T ss_pred             hhhhCcHHHHHHHHHHHHHhcCHHHHhhc
Confidence            99999999999999999999999999886

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=100.00  E-value=8.6e-80  Score=636.25  Aligned_cols=398  Identities=34%  Similarity=0.606  Sum_probs=332.8

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC-
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS-  102 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~-  102 (447)
                      ++++||++|++|.+|+|.+|++++||.|++||+|++|||||+.++++||++|+|.++++++|+.|.+|++|+.|...++ 
T Consensus         3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~   82 (411)
T PRK11856          3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGEA   82 (411)
T ss_pred             eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999986543 


Q ss_pred             CCC-CCCCC-CCCCCCCCC-CCC---CCCCC---CCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHH
Q 013218          103 AVP-TPSSD-VLESVKPPG-SEN---SPDSK---LNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY  173 (447)
Q Consensus       103 ~~~-~~~~~-~~~~~~~~~-~~~---~~~~~---~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~  173 (447)
                      ... .+.+. .++.+.+.. ..+   ..++.   +.........+||++|+||++|||||+.|+|||++|||+++||++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~~~  162 (411)
T PRK11856         83 EAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAA  162 (411)
T ss_pred             ccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHHHH
Confidence            211 11000 000000000 000   00000   0000111247899999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHH
Q 013218          174 AVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDAL  252 (447)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l  252 (447)
                      +......+.++...       +     ...+.     ......+.+|++++||.|+++|.+| .++|||+++.++|+|+|
T Consensus       163 ~~~~~~~~~~~~~~-------~-----~~~~~-----~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l  225 (411)
T PRK11856        163 AAAAAPAAAAAAAA-------A-----AAPPA-----AAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTAL  225 (411)
T ss_pred             HhcccccCCCCCCC-------C-----CCCCc-----ccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHH
Confidence            85321100000000       0     00000     0011356789999999999999999 58999999999999999


Q ss_pred             HHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCH
Q 013218          253 VKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSI  332 (447)
Q Consensus       253 ~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl  332 (447)
                      +++++++++.    +.++||+++|+||+++||++||+||++|.++  ++++|+++|+|+||++++||++|+|++++++++
T Consensus       226 ~~~~k~~~~~----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~--~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl  299 (411)
T PRK11856        226 LALRKQLKAI----GVKLTVTDFLIKAVALALKKFPELNASWDDD--AIVLKKYVNIGIAVATDGGLIVPVIRDADKKSL  299 (411)
T ss_pred             HHHHHHHHhh----ccCccHHHHHHHHHHHHHHhCcHhheEEeCC--EEEEcCCcCEEEEEECCCCeEeCcCCCcccCCH
Confidence            9999998642    3689999999999999999999999999875  799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEE
Q 013218          333 LEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVN  412 (447)
Q Consensus       333 ~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~ls  412 (447)
                      .+|+++++++++++|+|+|.++|+.+|||+|||+||+|..+|+|+||+||+|||++|++.++|++. +|+++++.+|+||
T Consensus       300 ~ei~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~-~g~~~~~~~m~ls  378 (411)
T PRK11856        300 FELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVV-DGEIVVRKVMPLS  378 (411)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEE-CCEEEEEEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999999999985 7899999999999


Q ss_pred             EEecccccChHHHHHHHHHHHHHhhCHHHhhhc
Q 013218          413 IGADHRVLDGATVAKFCNEWKQLIENPELLLLQ  445 (447)
Q Consensus       413 lt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~  445 (447)
                      |+||||++||+|+++||+.|+++||+|+.||++
T Consensus       379 lt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~~  411 (411)
T PRK11856        379 LSFDHRVIDGADAARFLKALKELLENPALLLLE  411 (411)
T ss_pred             EEeehhhcCcHHHHHHHHHHHHHHhCHHHHhcC
Confidence            999999999999999999999999999999874

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=3e-81  Score=598.14  Aligned_cols=428  Identities=55%  Similarity=0.849  Sum_probs=367.1

Q ss_pred             cccccccccccCCCCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCC
Q 013218            6 SRCCYSNHALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG   85 (447)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g   85 (447)
                      +|.||++-+-+--+++.++++++.++||++.|.++.+|+|+|||.|++-|.||||++||+.++|.+.++|+|.+++.+.+
T Consensus        47 ~~s~~~~~~~~t~s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~d  126 (474)
T KOG0558|consen   47 SRSWFSNEAMATDSNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPD  126 (474)
T ss_pred             cccccchhhhhcccccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCch
Confidence            35688888877778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeecccEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCce
Q 013218           86 NIVKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRV  165 (447)
Q Consensus        86 ~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI  165 (447)
                      |...+|++|..++.++..++...+.+.+......      +.+........+++|++|+||+|+||||+.|+|||++|||
T Consensus       127 dia~VGk~Lvd~eve~~~ds~e~s~es~~vs~~~------~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRv  200 (474)
T KOG0558|consen  127 DIAKVGKPLVDLEVEDSQDSPEDSDESPAVSLGE------SKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRV  200 (474)
T ss_pred             hhhHhCcceeeeeeccCcCCcccCCccccccCCC------CchhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcc
Confidence            9999999999998765432221111111000000      0111112235789999999999999999999999999999


Q ss_pred             ehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhcCcceEEEEe
Q 013218          166 LKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAAKIPHFHYVE  245 (447)
Q Consensus       166 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~~iP~~~~~~  245 (447)
                      .++||++|+......-.++....-+..+.       +.|. .........++.+|+.+.+|+|.+.|+.+..||||.++.
T Consensus       201 LKeDvL~fl~q~pg~~~~~~~~~~a~~~~-------~~ps-~~a~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~y~d  272 (474)
T KOG0558|consen  201 LKEDVLRFLGQVPGFVTDPSPSEHAVIPG-------PSPS-TKASSNLEADKTVPLRGFSRAMVKTMTEALKIPHFGYVD  272 (474)
T ss_pred             hHHHHHHHhccCCCCccCCCCceeecCCC-------CCCc-ccccCcccccceeechhHHHHHHHHHHHHhcCCcccccc
Confidence            99999999965432211111110000000       0000 001112234788999999999999999999999999999


Q ss_pred             eeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeee
Q 013218          246 EINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIK  325 (447)
Q Consensus       246 ~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~  325 (447)
                      +||+|.|+++|.+++....+.|+|+||++||+||++.||.++|.+|+.++..-..|++...+|||+|++++.||++|.|+
T Consensus       273 EIn~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiK  352 (474)
T KOG0558|consen  273 EINCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIK  352 (474)
T ss_pred             ccChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCcc
Confidence            99999999999999987778899999999999999999999999999999876689999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceee
Q 013218          326 NVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYP  405 (447)
Q Consensus       326 ~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~  405 (447)
                      |++.+|+.||++++++|.++.+.|+|++.|+.+|||++||+|.+|+++..|+|++||+||.++|+|...|.++..|+++.
T Consensus       353 N~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~  432 (474)
T KOG0558|consen  353 NVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYP  432 (474)
T ss_pred             ccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             EcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhcCC
Q 013218          406 SPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR  447 (447)
Q Consensus       406 r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~~  447 (447)
                      ..+|.|+++.||||+||+..|+|-+.+|+|||||+.|||+|+
T Consensus       433 a~IM~VswsADHRViDGaTmarFsn~WK~YlE~Pa~mll~lk  474 (474)
T KOG0558|consen  433 ASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLLQLK  474 (474)
T ss_pred             eEEEEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHhhccC
Confidence            999999999999999999999999999999999999999974

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=3.7e-79  Score=622.14  Aligned_cols=379  Identities=25%  Similarity=0.453  Sum_probs=312.7

Q ss_pred             CCCCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEE
Q 013218           17 DLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK   96 (447)
Q Consensus        17 ~~~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~   96 (447)
                      +-+...+.+|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+.
T Consensus        38 ~~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~  117 (418)
T PTZ00144         38 SKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSE  117 (418)
T ss_pred             ccccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEE
Confidence            44667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218           97 LVVGDSAVPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ  176 (447)
Q Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~  176 (447)
                      |+..++....+.  .+..+..+. .    +.+.    ......|.+|++++++++++..+..               .. 
T Consensus       118 I~~~~~~~~~~~--~~~~~~~~~-~----~~~~----~~~~~~p~~~~~a~~~~~a~p~vr~---------------~~-  170 (418)
T PTZ00144        118 IDTGGAPPAAAP--AAAAAAKAE-K----TTPE----KPKAAAPTPEPPAASKPTPPAAAKP---------------PE-  170 (418)
T ss_pred             EcCCCccccccc--cccCCCCCc-c----CCCC----CCCCCCCccccccccccCCchhhhc---------------cc-
Confidence            975443211100  000000000 0    0000    0001125566666666666555521               00 


Q ss_pred             cCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHH
Q 013218          177 KGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKL  255 (447)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~  255 (447)
                          .++....    . +       ...+     ......+.+|++++||.|+++|++| +++||||++.++|+|+|+++
T Consensus       171 ----~~~~~~~----~-~-------~~~~-----~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~  229 (418)
T PTZ00144        171 ----PAPAAKP----P-P-------TPVA-----RADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMEL  229 (418)
T ss_pred             ----cCCCCCC----C-C-------CCcc-----ccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHH
Confidence                0000000    0 0       0000     0000134579999999999999999 48999999999999999999


Q ss_pred             HHHhcccCCC-CCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHH
Q 013218          256 KASFQNNNSD-PNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILE  334 (447)
Q Consensus       256 ~k~~~~~~~~-~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~  334 (447)
                      |+++++.+.. .|.++|+++||+||+++||++||+||++|+++  ++++++++|||+||++++||++|||++++++++.+
T Consensus       230 r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~--~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~e  307 (418)
T PTZ00144        230 RKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGD--EIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAE  307 (418)
T ss_pred             HHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCC--EEEEecCCCEEEEEECCCCEEEccCCCcccCCHHH
Confidence            9999865443 47899999999999999999999999999765  79999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEE
Q 013218          335 ITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIG  414 (447)
Q Consensus       335 i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt  414 (447)
                      |++++++|++++|+|+|.++|++||||||||+|++|+++|+|||||||+|||++|++.++|++. ||++++|++|+|||+
T Consensus       308 Ia~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~-~g~i~~r~~m~lsLs  386 (418)
T PTZ00144        308 IEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVV-GNEIVIRPIMYLALT  386 (418)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEE-CCEEEEEeEEEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999995 789999999999999


Q ss_pred             ecccccChHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218          415 ADHRVLDGATVAKFCNEWKQLIENPELLLLQM  446 (447)
Q Consensus       415 ~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~  446 (447)
                      ||||++||+++|+||++|+++||+|+.||+++
T Consensus       387 ~DHRviDGa~AA~FL~~lk~~LE~P~~lll~~  418 (418)
T PTZ00144        387 YDHRLIDGRDAVTFLKKIKDLIEDPARMLLDL  418 (418)
T ss_pred             cchhhhChHHHHHHHHHHHHHhcCHHHHhhcC
Confidence            99999999999999999999999999999874

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=100.00  E-value=1.5e-71  Score=557.65  Aligned_cols=298  Identities=25%  Similarity=0.416  Sum_probs=258.4

Q ss_pred             CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCC
Q 013218          135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYP  214 (447)
Q Consensus       135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (447)
                      .+++||+||+||+|+||||+.|+||||+|||+++||++|+......  +..+..+.  ..+    ....+..   .....
T Consensus        48 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~--~~~~~~~~--~~~----~~~~~~~---~~~~~  116 (347)
T PRK14843         48 VVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIEN--DSIKSPAQ--IEK----VEEVPDN---VTPYG  116 (347)
T ss_pred             cccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccC--ccccCCCC--Ccc----ccCCCcc---cccCC
Confidence            4679999999999999999999999999999999999998432110  10000000  000    0000000   00112


Q ss_pred             CCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccce
Q 013218          215 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNS  292 (447)
Q Consensus       215 ~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~  292 (447)
                      ..+.+|++++||.|+++|.+| +++||||++.+||+|.|+++|+++++.+. ..|.++|+++||+||++.||++||.||+
T Consensus       117 ~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na  196 (347)
T PRK14843        117 EIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINA  196 (347)
T ss_pred             cceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeE
Confidence            245689999999999999999 58999999999999999999999985443 3478999999999999999999999999


Q ss_pred             EEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCc
Q 013218          293 CFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGK  372 (447)
Q Consensus       293 ~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~  372 (447)
                      +|++++.++++|+++||||||++++||++|||++++++++.+|++++++|+++||+|+|.++|++||||||||+|+||+.
T Consensus       197 ~~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~  276 (347)
T PRK14843        197 SLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQ  276 (347)
T ss_pred             EEecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCccc
Confidence            99876557999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          373 FGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       373 ~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      +|+|||||||+|||++|++.++|++. ||++++|++|+|||+||||++||+++++||+.|+++||+|+.||+
T Consensus       277 ~~tpIInpPq~aIlgvG~i~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~  347 (347)
T PRK14843        277 SFGPIINQPNSAILGVSSTIEKPVVV-NGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI  347 (347)
T ss_pred             ceeccccCCceEEEecCCcceeeEEE-CCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence            99999999999999999999999985 789999999999999999999999999999999999999998764

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=3e-71  Score=546.72  Aligned_cols=302  Identities=32%  Similarity=0.583  Sum_probs=258.0

Q ss_pred             ccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCC
Q 013218          136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPD  215 (447)
Q Consensus       136 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (447)
                      +++||+||+||+||||||+.|+|||++|||+++||++|+.+....+++.. +.+......  .+..+.+. +.  .....
T Consensus         2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~-~~--~~~~~   75 (306)
T PRK11857          2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAE-AASVSSAQQ--AAKTAAPA-AA--PPKLE   75 (306)
T ss_pred             cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCcc-ccccccccc--cccccCCc-cc--ccCCC
Confidence            56899999999999999999999999999999999999853211011100 000000000  00000000 00  00112


Q ss_pred             CceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218          216 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC  293 (447)
Q Consensus       216 ~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~  293 (447)
                      ++.+|++++|+.|+++|.+|+ ++|||+++.++|+|+|+++|+++++.+. ..|.++||++||+||+++||++||.+|++
T Consensus        76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~  155 (306)
T PRK11857         76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK  155 (306)
T ss_pred             ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence            456899999999999999995 8999999999999999999999986543 34789999999999999999999999999


Q ss_pred             EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218          294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF  373 (447)
Q Consensus       294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~  373 (447)
                      |+++++++++++++||||||++++||++|||++++++|+.+|++++++|++++|+|+|.++|++||||||||+|++|+.+
T Consensus       156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~  235 (306)
T PRK11857        156 YDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY  235 (306)
T ss_pred             EeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccc
Confidence            98765689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       374 ~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      |+||||+||+|||++|++.++|++ .||++++|++|+|||+||||++||+++++||++|+++||+|+.|++
T Consensus       236 ~tpiIn~pq~aILgvG~i~~~pvv-~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~~  305 (306)
T PRK11857        236 GVPVINYPELAIAGVGAIIDKAIV-KNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILGV  305 (306)
T ss_pred             eecccCCCccceeecccceEEeEE-ECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhc
Confidence            999999999999999999999999 4799999999999999999999999999999999999999997764

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=9.1e-72  Score=535.57  Aligned_cols=388  Identities=24%  Similarity=0.449  Sum_probs=307.7

Q ss_pred             CCCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           18 LPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        18 ~~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      +....++++..|.++|+++||.|.+|++++||.|++++.|++|||||.+++|.||.+|+|.+++|++||+|+.|+.|+.|
T Consensus        67 ~~~ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i  146 (457)
T KOG0559|consen   67 VRSTSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKI  146 (457)
T ss_pred             eeccceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEe
Confidence            33445889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218           98 VVGDSAVPTP-SSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ  176 (447)
Q Consensus        98 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~  176 (447)
                      ....+...+. ..++...+.......+++.. .+ .+....+.|.++                                 
T Consensus       147 ~~gaApa~~~~~apa~~~pk~~~a~~a~p~~-~s-~~~p~~~apv~e---------------------------------  191 (457)
T KOG0559|consen  147 SPGAAPAKGGASAPAKAEPKTAPAAAAPPKP-SS-KPPPKEAAPVAE---------------------------------  191 (457)
T ss_pred             cCCCCCccccccCCCccCCCCCCCCCCCCCc-cC-CCCccccCCCCC---------------------------------
Confidence            8753322211 11111101000000010000 00 000011111110                                 


Q ss_pred             cCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHH
Q 013218          177 KGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKL  255 (447)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~  255 (447)
                        ..++|.+..+..+.+...+...+.+++... ......+.+++|.+||+.||.|+..|+ +....+.+.||||++|+++
T Consensus       192 --~p~~p~~~~P~~~~a~k~~v~~~~~~p~~~-~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~m  268 (457)
T KOG0559|consen  192 --SPPAPSSPEPVPASAKKPSVAQPKPPPSEG-ATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEM  268 (457)
T ss_pred             --CCCCCCCCCCCCccccCccccCCCCCcccc-cCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence              000000000000000000000000111100 111345788999999999999999997 5777888899999999999


Q ss_pred             HHHhcccC-CCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHH
Q 013218          256 KASFQNNN-SDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILE  334 (447)
Q Consensus       256 ~k~~~~~~-~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~  334 (447)
                      |+++++.+ +++|.|+.|+.+|+||++.||++.|.+|+.++++  +|+|+|++||++||+++.||++|||||++.+++.|
T Consensus       269 Rk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~--~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~ad  346 (457)
T KOG0559|consen  269 RKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGD--DIVYRDYVDISVAVATPKGLVVPVIRNAESMNFAD  346 (457)
T ss_pred             HHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCC--eeEEeecceeEEEeecCCceeeeeecccccccHHH
Confidence            99999876 4789999999999999999999999999999987  79999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEE
Q 013218          335 ITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIG  414 (447)
Q Consensus       335 i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt  414 (447)
                      |..++..|..+||+|+|..+||.||||||||=|.||..+.||||||||+||||+..|.++|++. +|++++|++|.+.||
T Consensus       347 IE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v-~G~Vv~RPMMYvALT  425 (457)
T KOG0559|consen  347 IEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVV-GGQVVPRPMMYVALT  425 (457)
T ss_pred             HHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceee-CCEeeeccceEEEee
Confidence            9999999999999999999999999999999999999999999999999999999999999996 799999999999999


Q ss_pred             ecccccChHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218          415 ADHRVLDGATVAKFCNEWKQLIENPELLLLQM  446 (447)
Q Consensus       415 ~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~  446 (447)
                      ||||++||.+|.-||+.+|+++|||..|||+.
T Consensus       426 YDHRliDGREAVtFLr~iK~~VEDP~~mll~l  457 (457)
T KOG0559|consen  426 YDHRLIDGREAVTFLRKIKEAVEDPRKMLLDL  457 (457)
T ss_pred             ccccccccHHHHHHHHHHHHHhhCHHHHhhcC
Confidence            99999999999999999999999999999874

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=100.00  E-value=2.6e-60  Score=453.35  Aligned_cols=228  Identities=37%  Similarity=0.675  Sum_probs=203.2

Q ss_pred             CCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218          215 DDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC  293 (447)
Q Consensus       215 ~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~  293 (447)
                      +++++|++++||+|+++|++|+ ++||||++.+||+|+|+++|+++++.....+.++|+++|++||+++||++||+||++
T Consensus         3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~   82 (231)
T PF00198_consen    3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS   82 (231)
T ss_dssp             SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred             CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence            4688999999999999999996 899999999999999999999998765444559999999999999999999999999


Q ss_pred             EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218          294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF  373 (447)
Q Consensus       294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~  373 (447)
                      |++++ ++++++++|||+||++++||++|||++++++|+.+|+++++++++++|+|+|.++|++||||||||+|++|+++
T Consensus        83 ~~~~~-~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~  161 (231)
T PF00198_consen   83 WDGDG-EIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVES  161 (231)
T ss_dssp             EETTS-EEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SC
T ss_pred             ccccc-ceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcce
Confidence            99875 79999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       374 ~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      |+|+|||||+|||++|++.++|++ ++|+++++++|++||+||||++||+++++||++|+++||+|++|||
T Consensus       162 ~~pii~~pq~ail~vG~i~~~p~~-~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll  231 (231)
T PF00198_consen  162 FTPIINPPQVAILGVGAIRDRPVV-EDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL  231 (231)
T ss_dssp             EE----TTSSEEEEEEEEEEEEEE-ETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred             eEccCCcccceEEEecceEEEEEE-EeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence            999999999999999999999999 6889999999999999999999999999999999999999999986

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=100.00  E-value=8e-49  Score=417.73  Aligned_cols=223  Identities=26%  Similarity=0.392  Sum_probs=210.4

Q ss_pred             CCceecCchHHHHHHHHHHHhcCcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218          215 DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC  293 (447)
Q Consensus       215 ~~~~~~~s~~rk~ia~~m~~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~  293 (447)
                      +++.+||++++++|+++|..|+.+|+++...+|+++.|+++|+.+|+.+. ..|.|+||+++|+||+++||++||.+|++
T Consensus       114 ~~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas  193 (1228)
T PRK12270        114 EDEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH  193 (1228)
T ss_pred             CcceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence            45788999999999999999999999999999999999999999998765 56889999999999999999999999999


Q ss_pred             Ecc-CC-cEEEEcccceEEeEEEcC-----CCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEec
Q 013218          294 FNE-ES-LEVILKGSHNIGIAMATQ-----HGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNI  366 (447)
Q Consensus       294 ~~~-~~-~~i~~~~~v~igiav~~~-----~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnl  366 (447)
                      |++ |+ ..++++++||||+||+++     +||+||+|+++++++|.+|.+++++++.|||+|+|+++|++||||||||+
T Consensus       194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~  273 (1228)
T PRK12270        194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNP  273 (1228)
T ss_pred             eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecC
Confidence            985 33 248999999999999998     58999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccCCCceeEEEecceEEeeEEcC-----CCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhh
Q 013218          367 GAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSD-----DGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE  437 (447)
Q Consensus       367 g~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~-----dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le  437 (447)
                      |++|..+|+|+||+||+|||++|++...+++..     ++++.++++|+||+|||||+|||+++++||+.|+++|+
T Consensus       274 G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe  349 (1228)
T PRK12270        274 GGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL  349 (1228)
T ss_pred             CcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence            999999999999999999999999998888742     46799999999999999999999999999999999999

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=99.94  E-value=3.9e-25  Score=208.36  Aligned_cols=181  Identities=15%  Similarity=0.144  Sum_probs=155.8

Q ss_pred             cceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCC
Q 013218          238 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH  317 (447)
Q Consensus       238 iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~  317 (447)
                      -|.|+++.+||||+|+++.|+.         +++|++.++||+++|++++|+||.++.++  ++++||.++.++++..++
T Consensus        30 ~~~fsiT~~iDiT~l~~~~K~~---------~~~fy~~~ly~v~kavN~~~eFR~r~~~~--~v~~~D~i~ps~Ti~~~~   98 (219)
T PRK13757         30 QCTYNQTVQLDITAFLKTVKKN---------KHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWDSVHPCYTVFHEQ   98 (219)
T ss_pred             CCceEEEEEEEHHHHHHHHHHc---------CCChHHHHHHHHHHHHhcCHhHheEEECC--eEEEEeEEeeeEEEEeCC
Confidence            3459999999999999999884         89999999999999999999999999654  788899999999999877


Q ss_pred             CeEeeeeeccCCCCHHHHHHHHHHHHHHhhcC-CCCCCCCCCCeEEEEecCCCCCcccccccCC-C--ceeEEEecceEE
Q 013218          318 GLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNPADNSGGTITLSNIGAIGGKFGAPLLNL-P--EVAIIAMGRIEK  393 (447)
Q Consensus       318 Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g-~l~~~~~~~gtftISnlg~~G~~~~~pii~~-p--q~ail~vG~i~~  393 (447)
                      +.++-.+.-.+..++.+|.+...+.++++++. .+.++....+.|.||+++|+..++++.-++. .  ..+++++|+..+
T Consensus        99 ~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy~~  178 (219)
T PRK13757         99 TETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYT  178 (219)
T ss_pred             CceEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeeceEE
Confidence            65666888899999999999999989988875 4555555668999999999987776443332 2  357999999986


Q ss_pred             eeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 013218          394 VPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIEN  438 (447)
Q Consensus       394 ~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~  438 (447)
                      +     +|    |.+||||+++||.++||+|+++|++.||++|++
T Consensus       179 ~-----~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~  214 (219)
T PRK13757        179 Q-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE  214 (219)
T ss_pred             E-----CC----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence            3     67    789999999999999999999999999999976

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=99.94  E-value=3.5e-25  Score=207.42  Aligned_cols=178  Identities=16%  Similarity=0.180  Sum_probs=140.3

Q ss_pred             CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcC
Q 013218          237 KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQ  316 (447)
Q Consensus       237 ~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~  316 (447)
                      .-|+|+++.++|||+|+++.|+.         +++|+.+++|++++|++++|+||.++.++| ++++|+.++++++|..+
T Consensus        24 ~~p~~svT~~lDvT~l~~~~K~~---------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g-~v~~~d~i~ps~Tv~~~   93 (206)
T PF00302_consen   24 DNPYFSVTVNLDVTNLYKYAKEK---------GLSFFPAYLYAIMKAANEIPEFRYRIVDDG-EVVYYDRIDPSYTVFHK   93 (206)
T ss_dssp             SBEEEEEEEEEE-HHHHHHHHHT---------T--HHHHHHHHHHHHHTTSGGGCEEEETTS-CEEEESS-EEEEEEEET
T ss_pred             CCceEecceeEEhHHHHHHHHHc---------CCCcHHHHHHHHHHHHhcCHHHheeeeCCC-cEEEECCcceeeeEEeC
Confidence            57999999999999999999884         899999999999999999999999998764 89999999999999876


Q ss_pred             CCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcC-CCCCCC-CCCCeEEEEecCCCCCcccccccCC-C--ceeEEEecce
Q 013218          317 HGLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNPAD-NSGGTITLSNIGAIGGKFGAPLLNL-P--EVAIIAMGRI  391 (447)
Q Consensus       317 ~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g-~l~~~~-~~~gtftISnlg~~G~~~~~pii~~-p--q~ail~vG~i  391 (447)
                      ++..+..+.-.+..++.+|.+...+.++++++. .+.+++ ...+.|.+|+++|+..++++.-+.. +  ..+++++|++
T Consensus        94 ~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK~  173 (206)
T PF00302_consen   94 DDETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGKY  173 (206)
T ss_dssp             TTTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE--
T ss_pred             CCCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeeee
Confidence            543555777788999999999999999998764 455543 4557999999999988876543333 2  3579999999


Q ss_pred             EEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHH
Q 013218          392 EKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWK  433 (447)
Q Consensus       392 ~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~  433 (447)
                      .++     +|    |..||||+++||+++||+|+++|+++||
T Consensus       174 ~~~-----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ  206 (206)
T PF00302_consen  174 FEE-----NG----RLLMPVSIQVHHALVDGYHVGQFFEELQ  206 (206)
T ss_dssp             EEE-----TT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred             EeE-----CC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence            974     67    8899999999999999999999999986

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]

Probab=99.86  E-value=1.9e-20  Score=169.25  Aligned_cols=189  Identities=11%  Similarity=0.106  Sum_probs=158.6

Q ss_pred             HhcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEE
Q 013218          234 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM  313 (447)
Q Consensus       234 ~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav  313 (447)
                      ++...|||.++.+.|||++....|+.         ++||++.+++|+.+++++|+|||.++.++  ++++|+.+++.++|
T Consensus        24 R~~~~p~y~i~~~LDvtn~~~~vk~~---------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~--~~~~~d~v~p~~tv   92 (219)
T COG4845          24 RLLQYPHYDINLQLDVTNFYGYVKEN---------GLSFFPALLYAVTRCANRHQEFRLRIQNG--QLGYWDNVPPMYTV   92 (219)
T ss_pred             hhcccceEeeeeeeehhHHHHHHHHc---------CCcchHHHHHHHHHHhcccHHhHhhhcCC--eeEEeecCCcceEE
Confidence            44579999999999999999999884         89999999999999999999999999876  89999999999999


Q ss_pred             EcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCC-CCCCCC-CCCeEEEEecCCCCCcccccccCCC---ceeEEEe
Q 013218          314 ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNE-LNPADN-SGGTITLSNIGAIGGKFGAPLLNLP---EVAIIAM  388 (447)
Q Consensus       314 ~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~-l~~~~~-~~gtftISnlg~~G~~~~~pii~~p---q~ail~v  388 (447)
                      ..+++.++-++.-....++.+|.+....-+++.+++. +.+++. ....+.+||++|+..++++.-++-.   ...++.+
T Consensus        93 ~~~~~e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~  172 (219)
T COG4845          93 FHGETETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYA  172 (219)
T ss_pred             EcCCCcEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEee
Confidence            9988767778888899999999999988888888764 333332 2356778888888655544433311   2458999


Q ss_pred             cceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHh
Q 013218          389 GRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELL  442 (447)
Q Consensus       389 G~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~l  442 (447)
                      |+..+     +||    +.+||+++++||..+||.|+++|++.|++++++|-.+
T Consensus       173 Grf~~-----~~G----kl~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~  217 (219)
T COG4845         173 GRFYE-----EDG----KLTLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCI  217 (219)
T ss_pred             cceec-----cCC----eEEEeEEEEecccccchhhHHHHHHHHHHHhcCCCCC
Confidence            99887     589    5579999999999999999999999999999998654

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.74  E-value=6.2e-18  Score=133.20  Aligned_cols=74  Identities=27%  Similarity=0.555  Sum_probs=71.9

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      .+|++|.+|..+.+++|.+|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999976

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.73  E-value=1.7e-17  Score=168.32  Aligned_cols=119  Identities=24%  Similarity=0.366  Sum_probs=102.9

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA  103 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~~  103 (447)
                      .+++||++|++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.+.+....
T Consensus         3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~~   82 (371)
T PRK14875          3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEVS   82 (371)
T ss_pred             eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999753210


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHH
Q 013218          104 VPTPSSDVLESVKPPGSENSPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDV  170 (447)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV  170 (447)
                      .                           ......++|.+++++++ ++++....+++..+++...++
T Consensus        83 ~---------------------------~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i  121 (371)
T PRK14875         83 D---------------------------AEIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGGRTV  121 (371)
T ss_pred             c---------------------------ccccccccchhhhcccc-ccchhhccCCCCcceEcCcEE
Confidence            0                           00124578899999888 899999888888777655554

>PRK06748 hypothetical protein; Validated

Probab=99.63  E-value=1.6e-15  Score=120.87  Aligned_cols=63  Identities=22%  Similarity=0.334  Sum_probs=61.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe-CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQS-DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet-~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      .|+|.+|++++||.|++||+|++||| ||+..+|+||.+|+|.++++++||.|++|++|+.|+.
T Consensus        12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~   75 (83)
T PRK06748         12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD   75 (83)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence            59999999999999999999999999 8999999999999999999999999999999999964

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.53  E-value=5.6e-14  Score=109.74  Aligned_cols=63  Identities=22%  Similarity=0.386  Sum_probs=60.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus         9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889          9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            359999999999999999999999999999999999999999999999999999999999874

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.50  E-value=1.4e-13  Score=143.76  Aligned_cols=79  Identities=25%  Similarity=0.463  Sum_probs=75.0

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC-eeecccEEEEEecCCC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGDS  102 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~-~v~~G~~l~~i~~~~~  102 (447)
                      ++++||++|++|++|+|.+|++++||.|++||+|++|||||++++++||.+|+|.++++++|+ .|.+|++|+.|+.+++
T Consensus         3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~   82 (464)
T PRK11892          3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE   82 (464)
T ss_pred             cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence            479999999999999999999999999999999999999999999999999999999999996 7999999999976543

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.49  E-value=1.6e-13  Score=107.46  Aligned_cols=72  Identities=22%  Similarity=0.430  Sum_probs=69.5

Q ss_pred             EecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           26 VPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        26 ~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      +.+|+++.++.+|++.+|++++||.|++||+|+.+|++|+..+|+||.+|+|.+++++.|+.+..|+.|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence            678999999999999999999999999999999999999999999999999999999999999999999864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.48  E-value=9.1e-14  Score=122.82  Aligned_cols=63  Identities=27%  Similarity=0.343  Sum_probs=61.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      .-|++.+.+|++||.|++||+||+||+||+.++|+||.+|+|.+|++++||.|..||+|+.|+
T Consensus        77 m~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~  139 (140)
T COG0511          77 MVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE  139 (140)
T ss_pred             cceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence            359999999999999999999999999999999999999999999999999999999999986

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.43  E-value=7.4e-13  Score=103.05  Aligned_cols=63  Identities=30%  Similarity=0.401  Sum_probs=60.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..|+|.+|++++||.|++||+|+++|+||+.+++.||.+|+|.++++++|+.|..|++|+.|+
T Consensus         8 ~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225          8 MAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            359999999999999999999999999999999999999999999999999999999999874

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.40  E-value=1.5e-12  Score=141.57  Aligned_cols=75  Identities=28%  Similarity=0.461  Sum_probs=72.7

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ++|+||+||  |.||+|++|+|++||.|++||+|++|||||+.++|+||.+|+|.++++++|+.|.+|++|+.|+..
T Consensus         3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~   77 (633)
T PRK11854          3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA   77 (633)
T ss_pred             ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence            479999999  999999999999999999999999999999999999999999999999999999999999999865

>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit

Probab=99.40  E-value=2.5e-13  Score=92.60  Aligned_cols=38  Identities=47%  Similarity=0.713  Sum_probs=34.2

Q ss_pred             CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHH
Q 013218          135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLK  172 (447)
Q Consensus       135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~  172 (447)
                      ++.+||+||++|+|+|||+++|+|||++|||+++||++
T Consensus         2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a   39 (39)
T PF02817_consen    2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA   39 (39)
T ss_dssp             SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred             CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence            47899999999999999999999999999999999985

Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.35  E-value=3.1e-12  Score=137.84  Aligned_cols=77  Identities=26%  Similarity=0.446  Sum_probs=74.4

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ++++||+||++|.+|+|.+|+|++||.|+.||+|+++||||+.++++||.+|+|.++++++|+.|.+|++|+.|...
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~   79 (590)
T TIGR02927         3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA   79 (590)
T ss_pred             eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999753

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.33  E-value=4.8e-12  Score=109.71  Aligned_cols=62  Identities=31%  Similarity=0.492  Sum_probs=60.2

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      ..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus        68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549         68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            45999999999999999999999999999999999999999999999999999999999987

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.29  E-value=1.5e-11  Score=131.84  Aligned_cols=78  Identities=38%  Similarity=0.642  Sum_probs=74.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  102 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~  102 (447)
                      ++++||++|+ +.+|+|.+|+|++||.|++||+|++||+||+.++|+|+.+|+|.++++++|+.|..|++|+.++....
T Consensus         3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~~   80 (547)
T PRK11855          3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAGA   80 (547)
T ss_pred             ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccccc
Confidence            4799999999 99999999999999999999999999999999999999999999999999999999999999975433

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.28  E-value=1.3e-11  Score=110.28  Aligned_cols=62  Identities=27%  Similarity=0.431  Sum_probs=60.2

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      ..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.|
T Consensus        91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641         91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            45899999999999999999999999999999999999999999999999999999999987

>PRK07051 hypothetical protein; Validated

Probab=99.25  E-value=4.5e-11  Score=95.56  Aligned_cols=69  Identities=17%  Similarity=0.287  Sum_probs=63.0

Q ss_pred             EEEecCCCCCCCceEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEE
Q 013218           24 VDVPLAQTGEGIAECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLK   96 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~-------w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~   96 (447)
                      .++..|.      .|++.+       |++++||.|++||+|+++|+||+.++|+||.+|+|.++++++|+.|..|++|+.
T Consensus         4 ~~~~ap~------~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~   77 (80)
T PRK07051          4 HEIVSPL------PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR   77 (80)
T ss_pred             cEEeCCC------ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence            3455663      477888       999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee
Q 013218           97 LV   98 (447)
Q Consensus        97 i~   98 (447)
                      ++
T Consensus        78 i~   79 (80)
T PRK07051         78 IE   79 (80)
T ss_pred             Ee
Confidence            85

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.23  E-value=3.3e-11  Score=128.89  Aligned_cols=75  Identities=31%  Similarity=0.527  Sum_probs=72.2

Q ss_pred             EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           25 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        25 ~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      +|+||+||+. .+|+|++|+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++|+.|.+|++|+.|...
T Consensus         2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~   76 (546)
T TIGR01348         2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG   76 (546)
T ss_pred             ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence            5899999987 99999999999999999999999999999999999999999999999999999999999999753

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.22  E-value=6.2e-11  Score=90.54  Aligned_cols=62  Identities=32%  Similarity=0.485  Sum_probs=59.6

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      .+|+|.+|++++||.|++||+|++++++|...+|+||.+|+|.+++++.|+.|..|++|+.|
T Consensus         6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850           6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence            47999999999999999999999999999999999999999999999999999999999864

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.21  E-value=3.9e-11  Score=114.05  Aligned_cols=62  Identities=26%  Similarity=0.421  Sum_probs=59.4

Q ss_pred             eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           37 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        37 ~g~i~~-------w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      .|++.+       |+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus       205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            477777       99999999999999999999999999999999999999999999999999999985

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.19  E-value=5.2e-11  Score=107.06  Aligned_cols=62  Identities=29%  Similarity=0.440  Sum_probs=59.2

Q ss_pred             eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           37 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        37 ~g~i~~-------w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      -|++.+       |+|++||.|++||+||.||+||+.++|+|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus        88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531        88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            478876       99999999999999999999999999999999999999999999999999999874

The gene name is accB or fabE.

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=99.16  E-value=4.3e-10  Score=86.09  Aligned_cols=73  Identities=34%  Similarity=0.651  Sum_probs=70.3

Q ss_pred             EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           25 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        25 ~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      ++.+|+++.+..+|+|.+|+++.|+.|..|++++.++++|+...+.++.+|++.+..+.+|+.+..|++|+++
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999874

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.14  E-value=1.4e-10  Score=104.27  Aligned_cols=62  Identities=29%  Similarity=0.449  Sum_probs=58.8

Q ss_pred             eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           37 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        37 ~g~i~~-------w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      -|++..       |+|++||.|++||+||.||+||+.++|+||.+|+|.+++++.|+.|..|++|+.|+
T Consensus        87 ~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302         87 VGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             CEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            477776       99999999999999999999999999999999999999999999999999999873

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.09  E-value=2.7e-10  Score=122.06  Aligned_cols=64  Identities=27%  Similarity=0.412  Sum_probs=61.6

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      -.|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus       532 m~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~  595 (596)
T PRK14042        532 IPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV  595 (596)
T ss_pred             cceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence            3599999999999999999999999999999999999999999999999999999999999964

>TIGR02712 urea_carbox urea carboxylase

Probab=98.95  E-value=1.7e-09  Score=125.00  Aligned_cols=63  Identities=29%  Similarity=0.490  Sum_probs=60.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            469999999999999999999999999999999999999999999999999999999999874

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.92  E-value=1.9e-09  Score=115.95  Aligned_cols=59  Identities=29%  Similarity=0.379  Sum_probs=56.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEE
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETL   94 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l   94 (447)
                      ..|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|.+|++|
T Consensus       524 ~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l  582 (582)
T TIGR01108       524 IAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL  582 (582)
T ss_pred             ccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence            46999999999999999999999999999999999999999999999999999999875

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.91  E-value=3.3e-09  Score=114.13  Aligned_cols=62  Identities=31%  Similarity=0.408  Sum_probs=60.2

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      ..|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus       531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I  592 (593)
T PRK14040        531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL  592 (593)
T ss_pred             ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence            46899999999999999999999999999999999999999999999999999999999987

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.87  E-value=4.2e-09  Score=120.73  Aligned_cols=63  Identities=19%  Similarity=0.311  Sum_probs=60.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred             CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence            459999999999999999999999999999999999999999999999999999999999874

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.81  E-value=1.1e-08  Score=110.28  Aligned_cols=63  Identities=25%  Similarity=0.380  Sum_probs=61.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..|+|.+|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus       529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  591 (592)
T PRK09282        529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE  591 (592)
T ss_pred             CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence            458999999999999999999999999999999999999999999999999999999999985

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.80  E-value=1.3e-08  Score=105.52  Aligned_cols=62  Identities=27%  Similarity=0.339  Sum_probs=60.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      .|+|+.+.|++|+.|.+||+|+++|.|||++.|+||.+|+|.++.+.+|+.|..|++|+.++
T Consensus       583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~  644 (645)
T COG4770         583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE  644 (645)
T ss_pred             CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence            49999999999999999999999999999999999999999999999999999999999886

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.70  E-value=3.5e-08  Score=113.68  Aligned_cols=63  Identities=30%  Similarity=0.486  Sum_probs=60.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..|+|++|+|++||.|++||+|+++|+||++.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1083 m~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1083 MPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred             ceEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence            359999999999999999999999999999999999999999999999999999999999985

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.56  E-value=7.5e-08  Score=102.95  Aligned_cols=62  Identities=21%  Similarity=0.367  Sum_probs=60.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      .|.|+++.|+.||.|++||+|+.+|+|||+..|.||.+|+|.+++|..||.|..|+.|..++
T Consensus      1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038        1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred             CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence            48999999999999999999999999999999999999999999999999999999998875

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.28  E-value=1.1e-06  Score=92.58  Aligned_cols=62  Identities=26%  Similarity=0.375  Sum_probs=60.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      .|+|+++.|++|+.|++||+|+.+.+||+++-|.||.+|++.++.+..|+.+..|+.|+.++
T Consensus      1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred             CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence            58999999999999999999999999999999999999999999999999999999999886

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.17  E-value=3.5e-06  Score=69.62  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=53.3

Q ss_pred             CceEEEecCCCCCCCceEEEEE-EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCe
Q 013218           21 SGIVDVPLAQTGEGIAECELLK-WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI   87 (447)
Q Consensus        21 ~~~~~~~~p~~~~~~~~g~i~~-w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~   87 (447)
                      .....+-|-+.+..+ -|.|.. |++++|+.|++||+|++||++|+..+|.||.+|+|.++..+.++.
T Consensus        13 ~~~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          13 DGIATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             CcEEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            345666666666543 577777 666779999999999999999999999999999999997766554

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.05  E-value=3.6e-06  Score=86.47  Aligned_cols=62  Identities=24%  Similarity=0.280  Sum_probs=59.3

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      .|.|.+++|++||.|.+||.|+.++.||+.+.++||.+|++..+.++.|++|.-|.+|.+++
T Consensus       609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~  670 (670)
T KOG0238|consen  609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE  670 (670)
T ss_pred             CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence            37899999999999999999999999999999999999999999999999999999998763

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=97.93  E-value=1.9e-05  Score=66.70  Aligned_cols=63  Identities=22%  Similarity=0.224  Sum_probs=47.3

Q ss_pred             ceEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCC
Q 013218           22 GIVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG   85 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g   85 (447)
                      ....+-|-+.+.. .=|.|+.+.. ++|+.|++||++++||++|+..+|.||.+|+|.++.-+..
T Consensus        15 ~~~~vGiT~~aq~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~   78 (110)
T TIGR03077        15 QVVRLGLTSRMQE-NLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE   78 (110)
T ss_pred             CEEEEeeCHHHHH-hcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence            3445555554442 2345555544 6699999999999999999999999999999999864433

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=97.83  E-value=7.2e-05  Score=77.85  Aligned_cols=66  Identities=15%  Similarity=0.203  Sum_probs=57.7

Q ss_pred             ceEEEEEEE-cCCCCeecCCCeEEEEEeC------------------------------------------------cee
Q 013218           36 AECELLKWF-VKEGDEIEEFQPLCAVQSD------------------------------------------------KAT   66 (447)
Q Consensus        36 ~~g~i~~w~-v~~Gd~V~~g~~l~~iet~------------------------------------------------K~~   66 (447)
                      ..|.|.+++ +++||.|++||+|++|++.                                                ...
T Consensus       130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~  209 (409)
T PRK09783        130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR  209 (409)
T ss_pred             cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence            469999998 9999999999999999831                                                013


Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..|+||++|+|.+..+.+|+.|..|++|+.|...+
T Consensus       210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~  244 (409)
T PRK09783        210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD  244 (409)
T ss_pred             EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence            46999999999999999999999999999997644

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.80  E-value=4.6e-05  Score=64.82  Aligned_cols=59  Identities=24%  Similarity=0.239  Sum_probs=45.8

Q ss_pred             ceEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218           22 GIVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL   81 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~   81 (447)
                      ....+-|-+.+.. .-|.|+.+.. ++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus        17 ~~~~vGiT~~a~~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN   76 (114)
T PRK00624         17 RIVRLGLTSKMQE-NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN   76 (114)
T ss_pred             CEEEEeeCHHHHH-hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence            3455555555443 2355555555 669999999999999999999999999999999984

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=97.78  E-value=3.4e-05  Score=87.31  Aligned_cols=67  Identities=25%  Similarity=0.542  Sum_probs=61.6

Q ss_pred             CCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           34 GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        34 ~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      +-..|++++|+|+.|+.|..||+-++||.|||.+.+.|+.+|+| +...++|+.+.+|++|+.+.-++
T Consensus       690 sPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd  756 (2196)
T KOG0368|consen  690 SPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD  756 (2196)
T ss_pred             CCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence            33679999999999999999999999999999999999999999 55689999999999999998544

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.74  E-value=4.5e-05  Score=67.67  Aligned_cols=62  Identities=19%  Similarity=0.277  Sum_probs=51.1

Q ss_pred             ceEEEecCCCCCCCceEEEEEEEcC-CCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCC
Q 013218           22 GIVDVPLAQTGEGIAECELLKWFVK-EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAP   84 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~v~-~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~   84 (447)
                      .+..+-|-++... .-|.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.++...-
T Consensus        29 g~~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l   91 (144)
T PRK13380         29 GTVTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEAL   91 (144)
T ss_pred             CEEEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhh
Confidence            3556666655543 35788888887 89999999999999999999999999999999986543

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=97.73  E-value=9.3e-05  Score=74.57  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=32.0

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..|+||.+|+|..+.+++|+.|..|++|+.|.+.+
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~  239 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE  239 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence            36899999999999999999999999999998643

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=97.68  E-value=3.2e-05  Score=78.44  Aligned_cols=42  Identities=52%  Similarity=0.752  Sum_probs=38.8

Q ss_pred             CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218          135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ  176 (447)
Q Consensus       135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~  176 (447)
                      +..+||.+|++|+++|||++.|+|||++|||+++||++|...
T Consensus         5 ~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~   46 (347)
T PRK14843          5 KLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT   46 (347)
T ss_pred             cccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence            456899999999999999999999999999999999999754

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=97.68  E-value=7.9e-05  Score=74.70  Aligned_cols=65  Identities=18%  Similarity=0.183  Sum_probs=57.1

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------   65 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~--------------------------------------------------   65 (447)
                      ..|.|.+++|++||.|++||+|++++....                                                  
T Consensus        54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~  133 (310)
T PRK10559         54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT  133 (310)
T ss_pred             CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            579999999999999999999999986310                                                  


Q ss_pred             --------------------eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           66 --------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        66 --------------------~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                                          ...|+||++|+|.++.+++|+.|..|++|+.|...
T Consensus       134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~  188 (310)
T PRK10559        134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ  188 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence                                12489999999999999999999999999988754

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.65  E-value=0.00014  Score=63.26  Aligned_cols=78  Identities=22%  Similarity=0.282  Sum_probs=56.4

Q ss_pred             ceEEEecCCCCCCCceEEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEE---eeCCCCeee---ccc-E
Q 013218           22 GIVDVPLAQTGEGIAECELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL---LHAPGNIVK---VGE-T   93 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~-v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~---~v~~g~~v~---~G~-~   93 (447)
                      ....+-|-+++.. .-|.|..+. .++|+.|++||+++.||++|...+|.||.+|+|.++   +....+.+.   -|+ -
T Consensus        22 ~~~~vGit~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gW  100 (127)
T PRK01202         22 DTATVGITDHAQE-QLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGW  100 (127)
T ss_pred             CEEEEeeCHHHHh-hcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCce
Confidence            4555555555442 334555554 356999999999999999999999999999999999   444445554   443 7


Q ss_pred             EEEEecC
Q 013218           94 LLKLVVG  100 (447)
Q Consensus        94 l~~i~~~  100 (447)
                      |+.|...
T Consensus       101 l~~v~~~  107 (127)
T PRK01202        101 LFKIKPS  107 (127)
T ss_pred             EEEEEeC
Confidence            7777654

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=97.61  E-value=0.00011  Score=73.21  Aligned_cols=65  Identities=26%  Similarity=0.367  Sum_probs=57.2

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------   65 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~--------------------------------------------------   65 (447)
                      .+|+|.++++++||.|++||+|+.+++...                                                  
T Consensus        33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~  112 (322)
T TIGR01730        33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE  112 (322)
T ss_pred             ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            469999999999999999999999975321                                                  


Q ss_pred             ---------------------eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           66 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        66 ---------------------~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                                           ...|+||.+|+|..+.+.+|+.+..|++|+.|...
T Consensus       113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~  168 (322)
T TIGR01730       113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL  168 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence                                 23599999999999999999999999999999753

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=97.60  E-value=0.00015  Score=73.72  Aligned_cols=34  Identities=18%  Similarity=0.364  Sum_probs=31.5

Q ss_pred             EEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      .|+||++|+|.++.+++|+.|..|++|+.|.+.+
T Consensus       210 ~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~  243 (346)
T PRK10476        210 TVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD  243 (346)
T ss_pred             EEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence            5899999999999999999999999999998654

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.43  E-value=0.00039  Score=71.92  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=32.0

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..|+||++|+|..+.+++|+.|..|++|+.|.+.+
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~  250 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT  250 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence            36999999999999999999999999999997654

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.38  E-value=0.00039  Score=71.78  Aligned_cols=65  Identities=15%  Similarity=0.161  Sum_probs=55.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------   65 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~--------------------------------------------------   65 (447)
                      ..|+|.++++++||.|++||+|+.|+....                                                  
T Consensus        70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~  149 (385)
T PRK09578         70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER  149 (385)
T ss_pred             CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999986311                                                  


Q ss_pred             ---------------------eeEEeCCCCeEEEEEeeCCCCeeecc--cEEEEEecC
Q 013218           66 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVVG  100 (447)
Q Consensus        66 ---------------------~~~i~ap~~G~i~~~~v~~g~~v~~G--~~l~~i~~~  100 (447)
                                           ...|+||++|+|.+.++++|+.|..|  ++|+.|...
T Consensus       150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~  207 (385)
T PRK09578        150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL  207 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence                                 12499999999999999999999986  588888653

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=97.37  E-value=0.00031  Score=72.84  Aligned_cols=64  Identities=23%  Similarity=0.309  Sum_probs=54.2

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------   65 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~--------------------------------------------------   65 (447)
                      ..|+|.++++++||.|++||+|++|+....                                                  
T Consensus        72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~  151 (397)
T PRK15030         72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ  151 (397)
T ss_pred             CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            469999999999999999999999984321                                                  


Q ss_pred             ---------------------eeEEeCCCCeEEEEEeeCCCCeeecccE--EEEEec
Q 013218           66 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGET--LLKLVV   99 (447)
Q Consensus        66 ---------------------~~~i~ap~~G~i~~~~v~~g~~v~~G~~--l~~i~~   99 (447)
                                           ...|+||++|+|.+.+++.|+.|..|++  |+.|..
T Consensus       152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~  208 (397)
T PRK15030        152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQ  208 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEe
Confidence                                 1238999999999999999999999985  666654

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.34  E-value=0.00038  Score=70.25  Aligned_cols=34  Identities=21%  Similarity=0.432  Sum_probs=31.2

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..|+||++|+|..+.+.+|+.|..|++|+.|...
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~  237 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT  237 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence            4699999999999999999999999999999653

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.34  E-value=0.00031  Score=50.76  Aligned_cols=34  Identities=29%  Similarity=0.417  Sum_probs=28.7

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..|.+|.+|+|.++++++|+.|..|++|+.++..
T Consensus         3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~   36 (50)
T PF13533_consen    3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP   36 (50)
T ss_pred             EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence            5688888999999999999999999998888753

>TIGR00527 gcvH glycine cleavage system H protein

Probab=97.31  E-value=0.00034  Score=60.81  Aligned_cols=60  Identities=18%  Similarity=0.173  Sum_probs=45.7

Q ss_pred             eEEEecCCCCCCCceEEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeC
Q 013218           23 IVDVPLAQTGEGIAECELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA   83 (447)
Q Consensus        23 ~~~~~~p~~~~~~~~g~i~~w~-v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~   83 (447)
                      ...|-|-+.+.. .-|.|..+. .++|+.|++||+++.||++|+..+|.||.+|+|.++.-.
T Consensus        22 ~~~vGiT~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~   82 (127)
T TIGR00527        22 TATVGITEFAQD-ELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA   82 (127)
T ss_pred             EEEEeecHHHhh-CCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence            445555554432 335555553 357999999999999999999999999999999998543

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=97.27  E-value=0.00064  Score=70.19  Aligned_cols=65  Identities=17%  Similarity=0.209  Sum_probs=55.2

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDK---------------------------------------------------   64 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K---------------------------------------------------   64 (447)
                      ..|.|.++++++||.|++||+|++|+...                                                   
T Consensus        68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~  147 (385)
T PRK09859         68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN  147 (385)
T ss_pred             CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            46999999999999999999999998531                                                   


Q ss_pred             --------------------eeeEEeCCCCeEEEEEeeCCCCeeeccc--EEEEEecC
Q 013218           65 --------------------ATIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVVG  100 (447)
Q Consensus        65 --------------------~~~~i~ap~~G~i~~~~v~~g~~v~~G~--~l~~i~~~  100 (447)
                                          ....|+||++|+|.+.+++.|+.|..|+  +|+.|...
T Consensus       148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~  205 (385)
T PRK09859        148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRL  205 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEec
Confidence                                0135999999999999999999999985  68877643

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.26  E-value=0.00056  Score=49.41  Aligned_cols=29  Identities=21%  Similarity=0.305  Sum_probs=26.4

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDK   64 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K   64 (447)
                      ..|+|.+|+|++||.|++||+|+++++..
T Consensus         9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~   37 (50)
T PF13533_consen    9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD   37 (50)
T ss_pred             CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence            46999999999999999999999998654

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.11  E-value=0.001  Score=69.40  Aligned_cols=64  Identities=17%  Similarity=0.291  Sum_probs=54.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------   65 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~--------------------------------------------------   65 (447)
                      .+|+|.++++++||.|++||+|++|.....                                                  
T Consensus        94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~  173 (415)
T PRK11556         94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS  173 (415)
T ss_pred             ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            479999999999999999999999965310                                                  


Q ss_pred             ---------------------eeEEeCCCCeEEEEEeeCCCCeeeccc--EEEEEec
Q 013218           66 ---------------------TIEITSRYKGKVAQLLHAPGNIVKVGE--TLLKLVV   99 (447)
Q Consensus        66 ---------------------~~~i~ap~~G~i~~~~v~~g~~v~~G~--~l~~i~~   99 (447)
                                           ...|+||++|+|....++.|+.|..|+  +|+.|..
T Consensus       174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~  230 (415)
T PRK11556        174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQ  230 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEec
Confidence                                 225999999999999999999999985  6776654

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=97.08  E-value=0.0014  Score=67.13  Aligned_cols=65  Identities=22%  Similarity=0.269  Sum_probs=54.6

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDK---------------------------------------------------   64 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K---------------------------------------------------   64 (447)
                      ..|.|.++++++||.|++||+|++++...                                                   
T Consensus        68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~  147 (370)
T PRK11578         68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD  147 (370)
T ss_pred             cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            46999999999999999999999998631                                                   


Q ss_pred             ----------------------------------eeeEEeCCCCeEEEEEeeCCCCeeecc---cEEEEEecC
Q 013218           65 ----------------------------------ATIEITSRYKGKVAQLLHAPGNIVKVG---ETLLKLVVG  100 (447)
Q Consensus        65 ----------------------------------~~~~i~ap~~G~i~~~~v~~g~~v~~G---~~l~~i~~~  100 (447)
                                                        ....|+||++|+|..+.+..|+.|..|   ++|+.|...
T Consensus       148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~  220 (370)
T PRK11578        148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM  220 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecC
Confidence                                              012699999999999999999999776   368877543

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=96.94  E-value=0.0017  Score=56.03  Aligned_cols=44  Identities=20%  Similarity=0.347  Sum_probs=34.2

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218           38 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL   81 (447)
Q Consensus        38 g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~   81 (447)
                      |.|+.+.. ++|+.|++|++++.||+.|...++.||.+|+|.++.
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN   75 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN   75 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence            55555544 559999999999999999999999999999999884

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PRK12784 hypothetical protein; Provisional

Probab=96.90  E-value=0.0049  Score=47.87  Aligned_cols=65  Identities=15%  Similarity=0.285  Sum_probs=58.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceee-EEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATI-EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~-~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      -.|+|.++++.+++.|-+-++|+-|+++.... .|.--.+|.|..+.|++||.|..+..|+.++++
T Consensus        12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD   77 (84)
T PRK12784         12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD   77 (84)
T ss_pred             cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence            46999999999999999999999999876554 478899999999999999999999999999764

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=96.86  E-value=0.0034  Score=63.16  Aligned_cols=32  Identities=16%  Similarity=0.315  Sum_probs=28.0

Q ss_pred             EEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      .|+||++|+|..+.+..|+.|.. ++|+.|.+.
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~  237 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDT  237 (327)
T ss_pred             EEECCCCeEEEEEecCCCCccCC-CccEEEecC
Confidence            47899999999999999999986 788888653

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=96.73  E-value=0.0013  Score=65.73  Aligned_cols=64  Identities=25%  Similarity=0.408  Sum_probs=47.6

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------e----------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA---------------------T----------------------------   66 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~---------------------~----------------------------   66 (447)
                      ..|.| +|+|++||.|++||+|+++++...                     .                            
T Consensus        28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  106 (328)
T PF12700_consen   28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI  106 (328)
T ss_dssp             S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred             CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence            46999 999999999999999999985432                     0                            


Q ss_pred             ------------------e----------EEeCCCCeEEE-------------------------EEeeCCCCeeecccE
Q 013218           67 ------------------I----------EITSRYKGKVA-------------------------QLLHAPGNIVKVGET   93 (447)
Q Consensus        67 ------------------~----------~i~ap~~G~i~-------------------------~~~v~~g~~v~~G~~   93 (447)
                                        .          .|.||++|+|.                         ++.+.+|+.+..|++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~  186 (328)
T PF12700_consen  107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQP  186 (328)
T ss_dssp             STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTC
T ss_pred             HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCce
Confidence                              0          28999999999                         999999999999999


Q ss_pred             EEEEecC
Q 013218           94 LLKLVVG  100 (447)
Q Consensus        94 l~~i~~~  100 (447)
                      |+.|...
T Consensus       187 l~~i~~~  193 (328)
T PF12700_consen  187 LFTIADL  193 (328)
T ss_dssp             SEEEEEE
T ss_pred             eeeeccC
Confidence            9998754

...

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=96.72  E-value=0.0044  Score=59.69  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=51.5

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      +|.+.. .++.||.|++||+|+.|+.    .+|.||.+|+|.-+ +++|-.|+.|.-|+.|++-.
T Consensus       172 ~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~V~~G~Ki~dIDPR~  230 (256)
T TIGR03309       172 DGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLTVTEGLKIGDVDPRG  230 (256)
T ss_pred             CeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCCcCCCCEEEEECCCC
Confidence            455544 8999999999999999974    69999999999775 89999999999999998644

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=96.71  E-value=0.002  Score=55.73  Aligned_cols=67  Identities=16%  Similarity=0.247  Sum_probs=49.4

Q ss_pred             cccCCCCCceEEEecCCCCCCCceEEEEEE-EcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218           14 ALADLPASGIVDVPLAQTGEGIAECELLKW-FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL   81 (447)
Q Consensus        14 ~~~~~~~~~~~~~~~p~~~~~~~~g~i~~w-~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~   81 (447)
                      .-.+..+..+..+-|-+.... .-|.|+-+ +.++|+.|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus        16 eWvr~e~d~~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN   83 (131)
T COG0509          16 EWVRVEGDGTATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN   83 (131)
T ss_pred             EEEEecCCCEEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence            333334445566666555543 23555555 35789999999999999999999999999999998874

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=96.65  E-value=0.0035  Score=48.64  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=32.2

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..|.||.+|+|.++++++||.|..||+|+.++...
T Consensus         3 ~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K   37 (71)
T PRK05889          3 EDVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK   37 (71)
T ss_pred             cEEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            35899999999999999999999999999998755

>PRK06748 hypothetical protein; Validated

Probab=96.22  E-value=0.0076  Score=48.29  Aligned_cols=32  Identities=25%  Similarity=0.189  Sum_probs=31.0

Q ss_pred             EEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      .|.||..|+|.++++++||.|..||+|+.+++
T Consensus         6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET   37 (83)
T PRK06748          6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET   37 (83)
T ss_pred             EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            58999999999999999999999999999998

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.68  E-value=0.034  Score=57.58  Aligned_cols=32  Identities=38%  Similarity=0.530  Sum_probs=29.0

Q ss_pred             EeCCCCeEEEEEee-CCCCeeecccEEEEEecC
Q 013218           69 ITSRYKGKVAQLLH-APGNIVKVGETLLKLVVG  100 (447)
Q Consensus        69 i~ap~~G~i~~~~v-~~g~~v~~G~~l~~i~~~  100 (447)
                      |+||++|+|..+.+ ..|+.|..|++|+.|.+.
T Consensus       274 i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~  306 (423)
T TIGR01843       274 IRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPE  306 (423)
T ss_pred             EECCCCcEEEEEEEEccCceecCCCeeEEEecC
Confidence            89999999999876 799999999999999753

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.62  E-value=0.025  Score=43.57  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             EEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      .|.||..|+|.++++++|+.|..|++|+.++...
T Consensus         3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k   36 (70)
T PRK08225          3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK   36 (70)
T ss_pred             eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            5899999999999999999999999999998755

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=95.57  E-value=0.024  Score=54.90  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=29.9

Q ss_pred             EeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      |+||++|+|..+.+.+|+.|..|++|+.|.+.
T Consensus        91 i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~  122 (265)
T TIGR00999        91 VRSPFDGYITQKSVTLGDYVAPQAELFRVADL  122 (265)
T ss_pred             EECCCCeEEEEEEcCCCCEeCCCCceEEEEcC
Confidence            69999999999999999999999999998753

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=95.48  E-value=0.022  Score=42.67  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=29.9

Q ss_pred             EeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      +.||.+|+|.++++++|+.|..|++|+.++..
T Consensus         2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~   33 (67)
T cd06850           2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM   33 (67)
T ss_pred             ccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence            68999999999999999999999999999753

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=95.30  E-value=0.041  Score=55.94  Aligned_cols=33  Identities=33%  Similarity=0.397  Sum_probs=30.9

Q ss_pred             EeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      |+||.+|+|.+..+..|+.|.+|++|+.+.+.+
T Consensus       211 IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~  243 (352)
T COG1566         211 IRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLD  243 (352)
T ss_pred             EECCCCceEEeecccCCCeecCCCceEEEeccc
Confidence            899999999999999999999999999988754

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.30  E-value=0.059  Score=53.77  Aligned_cols=58  Identities=12%  Similarity=0.126  Sum_probs=47.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe---CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQS---DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~iet---~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      +=+...+++.||.|++||+|++|=.   +....++.||.+|+|.-+  ...-.|..|+.|+.|
T Consensus       237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~--~~~p~v~~G~~l~~i  297 (298)
T cd06253         237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL--REYPLVYEGSLVARI  297 (298)
T ss_pred             CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe--ecCCeecCCceEEEe
Confidence            3467788999999999999999953   345778999999999664  566788888888876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=95.20  E-value=0.032  Score=46.49  Aligned_cols=44  Identities=18%  Similarity=0.161  Sum_probs=38.0

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL   81 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~   81 (447)
                      -|.-.+-.|++||.|++||.|++.+ +-....|.|+.+|+|..|.
T Consensus        38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~   81 (101)
T PF13375_consen   38 IGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE   81 (101)
T ss_pred             CCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence            3555778899999999999999997 4668899999999999874

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.00  E-value=0.081  Score=52.47  Aligned_cols=59  Identities=22%  Similarity=0.357  Sum_probs=45.6

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet--~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      ..|. .+..++.||.|++||+|++|-.  .....+++||.+|+|..  ....-.|..|+.|+.|
T Consensus       226 ~~G~-~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~--~~~~~~v~~G~~l~~i  286 (287)
T cd06251         226 QGGL-LRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG--RNNLPLVNEGDALFHI  286 (287)
T ss_pred             CCeE-EEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE--ecCCCccCCCCEEEEe
Confidence            3455 5579999999999999999953  12347899999999954  4566678888888765

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=94.97  E-value=0.035  Score=49.08  Aligned_cols=35  Identities=29%  Similarity=0.327  Sum_probs=32.8

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ...|+||..|++.+++|++||.|..||+|+.|+..
T Consensus        70 ~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAM  104 (140)
T COG0511          70 GTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAM  104 (140)
T ss_pred             CceEecCcceEEEEEeeccCCEEcCCCEEEEEEee
Confidence            46799999999999999999999999999999965

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=94.68  E-value=0.12  Score=52.09  Aligned_cols=59  Identities=25%  Similarity=0.318  Sum_probs=46.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      +=+....++.||.|++||+|++|-.    .....++.||.+|+|.-.  ...-.|..|+.|+.|.
T Consensus       252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~--~~~~~v~~G~~l~~i~  314 (316)
T cd06252         252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR--RPPGLVRRGDCLAVLA  314 (316)
T ss_pred             CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe--eCCCccCCCCEEEEEe
Confidence            4467788999999999999999854    245678999999999654  3445577888887764

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=94.44  E-value=0.12  Score=53.03  Aligned_cols=59  Identities=20%  Similarity=0.308  Sum_probs=45.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      .|=+.+.+++.||.|++||+|++|-.    +....+|.||.+|+|.-  ....-.|..|+.|+.|
T Consensus       296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~~V~~G~~l~~I  358 (359)
T cd06250         296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRRFVRAGDELAKI  358 (359)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCccccCCCeEEEe
Confidence            34467788999999999999999852    22333469999999965  5677788888888876

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=94.41  E-value=0.072  Score=46.46  Aligned_cols=37  Identities=24%  Similarity=0.278  Sum_probs=33.6

Q ss_pred             eeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           65 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        65 ~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ....|.||.+|+|.++++++||.|..|++|+.++...
T Consensus        60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamK   96 (130)
T PRK06549         60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMK   96 (130)
T ss_pred             CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccC
Confidence            4567999999999999999999999999999998653

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=94.26  E-value=0.07  Score=41.66  Aligned_cols=34  Identities=29%  Similarity=0.408  Sum_probs=29.7

Q ss_pred             EEeCCCCeEEEE------EeeCCCCeeecccEEEEEecCC
Q 013218           68 EITSRYKGKVAQ------LLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        68 ~i~ap~~G~i~~------~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      +|++|..|...+      +++++|+.|..||+|+.++...
T Consensus         2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K   41 (74)
T PF00364_consen    2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMK   41 (74)
T ss_dssp             EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSS
T ss_pred             EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCc
Confidence            678888887666      9999999999999999998754

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=94.21  E-value=0.15  Score=59.70  Aligned_cols=81  Identities=12%  Similarity=0.119  Sum_probs=61.3

Q ss_pred             CCceEEEecCCCCCCCce----------EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeee
Q 013218           20 ASGIVDVPLAQTGEGIAE----------CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVK   89 (447)
Q Consensus        20 ~~~~~~~~~p~~~~~~~~----------g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~   89 (447)
                      .+++..|++-..|+-...          |+..++.++.++.+..++.....+. .....|.||..|+|.++++++||.|.
T Consensus      1019 ~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd~V~ 1097 (1143)
T TIGR01235      1019 KGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQAVN 1097 (1143)
T ss_pred             CCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCCEeC
Confidence            466667777677654333          4567777888888777766555432 23356999999999999999999999


Q ss_pred             cccEEEEEecCC
Q 013218           90 VGETLLKLVVGD  101 (447)
Q Consensus        90 ~G~~l~~i~~~~  101 (447)
                      .||+|+.++...
T Consensus      1098 ~Gd~L~~iEamK 1109 (1143)
T TIGR01235      1098 KGDPLVVLEAMK 1109 (1143)
T ss_pred             CCCEEEEEEecc
Confidence            999999999754

This enzyme plays a role in gluconeogensis but not glycolysis.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=94.18  E-value=0.074  Score=44.01  Aligned_cols=32  Identities=28%  Similarity=0.544  Sum_probs=24.6

Q ss_pred             EeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      |+||++|+|..+.+++|+.|..|++|+.|...
T Consensus         2 i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    2 IRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             EECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            67788888888777888888888887777654

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=94.11  E-value=0.16  Score=51.30  Aligned_cols=58  Identities=19%  Similarity=0.331  Sum_probs=46.5

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      +=+....++.||.|++||+|++|-.    .....++.||.+|+|..  ....-.|..|+.|+.|
T Consensus       263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i  324 (325)
T TIGR02994       263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL  324 (325)
T ss_pred             CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence            3356788999999999999999953    23467899999999976  4566778888888865

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>COG3608 Predicted deacylase [General function prediction only]

Probab=93.85  E-value=0.13  Score=51.69  Aligned_cols=60  Identities=20%  Similarity=0.290  Sum_probs=44.9

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe---CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQS---DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet---~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ++=+++.+++.||.|++||+|+.|-.   .+...||+|+.+|+|.....  --.+..|+.+..+.
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~--~~~v~~Gdl~~~v~  325 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS--LRLVQPGDLLKVVG  325 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee--ccccCCCCeeeeec
Confidence            44579999999999999999998865   47899999999999987632  12334444444443

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=93.78  E-value=0.11  Score=46.74  Aligned_cols=36  Identities=33%  Similarity=0.416  Sum_probs=32.8

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ...|.||..|+|.++++++||.|..||+|+.++...
T Consensus        84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK  119 (153)
T PRK05641         84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK  119 (153)
T ss_pred             CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence            457999999999999999999999999999998654

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=93.26  E-value=0.12  Score=45.97  Aligned_cols=47  Identities=26%  Similarity=0.313  Sum_probs=35.4

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EeCCCCeEEEEEee
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQLLH   82 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~-i~ap~~G~i~~~~v   82 (447)
                      .+|..+-..+.+|+.|.+||.|+-+.|-|..+- ++||.+|+|.=+.-
T Consensus        87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e  134 (150)
T PF09891_consen   87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIE  134 (150)
T ss_dssp             EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEE
T ss_pred             ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEe
Confidence            467778889999999999999999999997655 99999999976643

; PDB: 3D4R_D.

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=93.24  E-value=0.16  Score=49.29  Aligned_cols=49  Identities=27%  Similarity=0.316  Sum_probs=37.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN   86 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~   86 (447)
                      .|..-+.+|+|||.|++||+|++-- .-..+-+.||.+|+|.+|.-.+--
T Consensus        37 ~g~~Pkm~VkeGD~Vk~Gq~LF~dK-~~p~v~ftsPvsG~V~~I~RG~rR   85 (257)
T PF05896_consen   37 PGMKPKMLVKEGDRVKAGQPLFEDK-KNPGVKFTSPVSGTVKAINRGERR   85 (257)
T ss_pred             CCCCccEEeccCCEEeCCCeeEeeC-CCCCcEEecCCCeEEEEEecCCCc
Confidence            3555788999999999999999632 224566899999999998664433

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=93.20  E-value=0.19  Score=49.84  Aligned_cols=55  Identities=25%  Similarity=0.262  Sum_probs=40.3

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEe--CceeeEEeCCCCeEEEEEeeCCCCeeecccEE
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQLLHAPGNIVKVGETL   94 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~iet--~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l   94 (447)
                      +=+.+.+++.||.|++||+|++|=.  .....+|.||++|+|.-+.  ..-.|..|+.|
T Consensus       231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l  287 (288)
T cd06254         231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL  287 (288)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence            4467788999999999999999932  2446789999999997653  33445555544

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=92.92  E-value=0.16  Score=51.09  Aligned_cols=43  Identities=19%  Similarity=0.356  Sum_probs=36.7

Q ss_pred             EEEEeCceeeEEeCCCC---eEEEEEeeCCCCeeecccEEEEEecC
Q 013218           58 CAVQSDKATIEITSRYK---GKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        58 ~~iet~K~~~~i~ap~~---G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      +.|+.......|.++.+   |+|.+++|++||.|..|++|+.|++.
T Consensus         5 G~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~   50 (327)
T TIGR02971         5 GRLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR   50 (327)
T ss_pred             ceEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence            34555555667899999   99999999999999999999999864

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=92.87  E-value=0.092  Score=51.73  Aligned_cols=34  Identities=29%  Similarity=0.315  Sum_probs=24.2

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..|.++.+|+|.+++|++|+.|..||+|+.|++.
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~   35 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPT   35 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred             EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence            4688999999999999999999999999999853

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK07051 hypothetical protein; Validated

Probab=92.85  E-value=0.17  Score=40.19  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=32.4

Q ss_pred             eeEEeCCCCeEEEE-------EeeCCCCeeecccEEEEEecC
Q 013218           66 TIEITSRYKGKVAQ-------LLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        66 ~~~i~ap~~G~i~~-------~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..+|.||..|++.+       +++++|+.|..|++|+.++..
T Consensus         3 ~~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~   44 (80)
T PRK07051          3 QHEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVM   44 (80)
T ss_pred             ccEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEc
Confidence            46799999999999       999999999999999999874

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=92.65  E-value=0.19  Score=50.95  Aligned_cols=41  Identities=20%  Similarity=0.406  Sum_probs=35.4

Q ss_pred             EEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           58 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        58 ~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      +.|+++  .+.|.++.+|+|.++++++||.|..||+|+.|+..
T Consensus        42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~   82 (346)
T PRK10476         42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR   82 (346)
T ss_pred             eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence            344443  67899999999999999999999999999999753

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=92.27  E-value=0.16  Score=51.12  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=32.6

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ...|.|+.+|+|.++++++||.|..||+|+.|+..
T Consensus        42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~   76 (334)
T TIGR00998        42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT   76 (334)
T ss_pred             eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence            57899999999999999999999999999999753

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=91.75  E-value=0.33  Score=50.74  Aligned_cols=61  Identities=21%  Similarity=0.232  Sum_probs=48.6

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           39 ELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        39 ~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      .|.-..++.|+.-..=+..+.|+. .-...|.++.+|+|.++++++|+.|..||+|+.|++.
T Consensus        61 ~V~v~~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~  121 (415)
T PRK11556         61 PVQAATATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPR  121 (415)
T ss_pred             ceEEEEEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcH
Confidence            345555666665555556678876 4667899999999999999999999999999999763

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=91.53  E-value=0.27  Score=51.74  Aligned_cols=45  Identities=24%  Similarity=0.282  Sum_probs=38.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEee
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH   82 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v   82 (447)
                      .|.--+..|++||+|++||+|++-. .-....+.||.+|+|..|..
T Consensus        37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~-~~~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        37 VGMRPKMKVRPGDKVKAGQPLFEDK-KNPGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             CCCCCceEeCcCCEEcCCCEeEecC-CCceEEEEcCCCeEEEEEec
Confidence            3666778999999999999999875 33678899999999999943

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=91.38  E-value=0.22  Score=49.53  Aligned_cols=41  Identities=22%  Similarity=0.342  Sum_probs=28.2

Q ss_pred             EEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           57 LCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        57 l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      -+.|+.  -...+.++.+|+| ++++++|+.|..|++|+.+...
T Consensus        14 ~G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~   54 (328)
T PF12700_consen   14 SGTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS   54 (328)
T ss_dssp             EEEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred             EEEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence            345554  4567999999999 9999999999999999999853

...

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=91.34  E-value=0.67  Score=50.55  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=32.6

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      .+|.||..|+|.+++|++||.|..||+|+.++...
T Consensus       526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK  560 (596)
T PRK14042        526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK  560 (596)
T ss_pred             CeEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence            46999999999999999999999999999999764

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=91.24  E-value=0.42  Score=49.00  Aligned_cols=59  Identities=17%  Similarity=0.194  Sum_probs=42.7

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           40 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        40 i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      +.-+.++.|+.-..=..-+.++.. -...|.++.+|.|.++++++|+.|..||+|+.++.
T Consensus        36 v~~~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~   94 (370)
T PRK11578         36 YQTLIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP   94 (370)
T ss_pred             eEEEEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            444445555533332344455543 34589999999999999999999999999999965

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=91.18  E-value=0.44  Score=49.14  Aligned_cols=56  Identities=14%  Similarity=0.103  Sum_probs=45.8

Q ss_pred             EcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           44 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        44 ~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      .++.|+....-+..+.|+.. -...|.++.+|+|.++++++|+.|+.||+|+.|++.
T Consensus        40 ~v~~~~~~~~~~~~G~v~~~-~~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~   95 (385)
T PRK09859         40 TLSPGSVNVLSELPGRTVPY-EVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA   95 (385)
T ss_pred             EeEEEeccceEEEEEEEEEE-EEEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence            45666655555667788755 467899999999999999999999999999999753

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=91.13  E-value=0.16  Score=49.97  Aligned_cols=29  Identities=21%  Similarity=0.270  Sum_probs=21.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDK   64 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K   64 (447)
                      ..|.|.+++|++||.|++||+|++|+...
T Consensus         8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~~   36 (305)
T PF00529_consen    8 VGGIVTEILVKEGQRVKKGQVLARLDPTD   36 (305)
T ss_dssp             S-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred             CCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence            56999999999999999999999998543

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.04  E-value=0.4  Score=50.73  Aligned_cols=42  Identities=19%  Similarity=0.254  Sum_probs=35.1

Q ss_pred             EEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           60 VQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        60 iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      |..+.-...|.++..|+|.+++|++||.|..|++|+.+++..
T Consensus        53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~   94 (457)
T TIGR01000        53 IEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN   94 (457)
T ss_pred             EEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence            333444567899999999999999999999999999997643

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=90.94  E-value=0.37  Score=47.79  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=32.1

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ...|.+|.+|+|.++++++|+.|..|++|+.+...
T Consensus        26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~   60 (322)
T TIGR01730        26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD   60 (322)
T ss_pred             EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence            46799999999999999999999999999999753

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=90.81  E-value=0.39  Score=49.63  Aligned_cols=44  Identities=25%  Similarity=0.288  Sum_probs=38.1

Q ss_pred             EEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           58 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        58 ~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      +.|........|.++.+|+|.+++|++||.|..|++|+.++...
T Consensus        35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~   78 (423)
T TIGR01843        35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD   78 (423)
T ss_pred             eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence            35556677777999999999999999999999999999998653

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2

Probab=90.75  E-value=4.7  Score=42.64  Aligned_cols=68  Identities=15%  Similarity=0.218  Sum_probs=39.8

Q ss_pred             CCeEEEEecCCCCC-cc----cccccCC-C---ceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHH-HH
Q 013218          358 GGTITLSNIGAIGG-KF----GAPLLNL-P---EVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATV-AK  427 (447)
Q Consensus       358 ~gtftISnlg~~G~-~~----~~pii~~-p---q~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~a-a~  427 (447)
                      ++||.|||||.+.. ..    ..-++.. +   -.+.+.++-+.-     .+|      -|++++++=.-+++-... -.
T Consensus       403 ~~t~evSNLG~~~~~~~~~~~I~~~~Fsq~~~~~~~~f~~~viS~-----~~G------~L~i~~s~~~~~~~~~~~~~~  471 (480)
T PF07247_consen  403 RSTFEVSNLGVFDFEENGKWKIEDMVFSQSAGVIGSAFSFNVIST-----KGG------GLNISISWQEGIVEDEEMEDE  471 (480)
T ss_pred             CCcEEEEeCCcccCCCCCCeEEEEEEEeCCCCCCcCCEEEEEEEc-----CCC------ceEEEEEEeCCcccccchHHH
Confidence            57999999998863 00    0111100 0   111233333321     234      388899998888886666 48


Q ss_pred             HHHHHHHHh
Q 013218          428 FCNEWKQLI  436 (447)
Q Consensus       428 Fl~~l~~~L  436 (447)
                      |++.|++.|
T Consensus       472 ~~~~~~~~~  480 (480)
T PF07247_consen  472 FMELFKQNL  480 (480)
T ss_pred             HHHHHHhhC
Confidence            888888764

3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=90.63  E-value=0.51  Score=47.43  Aligned_cols=56  Identities=20%  Similarity=0.283  Sum_probs=40.2

Q ss_pred             EEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        41 ~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      -..+|++||.|++||+|+|-- -...+-+.||.+|+|..|+-.+-..+.  +++..++.
T Consensus        41 p~mkV~~gD~VkkGq~LfEdK-knpgv~~Tap~sG~V~aI~RG~KRvLq--sVVI~~~g   96 (447)
T COG1726          41 PSMKVREGDAVKKGQVLFEDK-KNPGVVFTAPVSGKVTAIHRGEKRVLQ--SVVIKVEG   96 (447)
T ss_pred             CcceeccCCeeeccceeeecc-cCCCeEEeccCCceEEEeecccceeee--eEEEEecC
Confidence            456899999999999999742 225667999999999998655443333  45555543

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=90.44  E-value=0.42  Score=49.92  Aligned_cols=38  Identities=26%  Similarity=0.244  Sum_probs=33.6

Q ss_pred             CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           63 DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        63 ~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ......|.++.+|+|.+++|++|+.|..|++|+.|+..
T Consensus        55 ~~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~   92 (421)
T TIGR03794        55 SSGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQP   92 (421)
T ss_pred             CCceeEEECCCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence            33445899999999999999999999999999999764

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=90.38  E-value=0.59  Score=48.21  Aligned_cols=57  Identities=18%  Similarity=0.144  Sum_probs=44.5

Q ss_pred             EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           43 WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        43 w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..++.++.-..-...+.|+.. -...|.++.+|+|.++++++||.|..||+|+.|++.
T Consensus        41 ~~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~   97 (385)
T PRK09578         41 VTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA   97 (385)
T ss_pred             EEEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence            345555544444556677754 456899999999999999999999999999999753

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=90.21  E-value=0.31  Score=48.81  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=31.7

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..|.++.+|.|.++++++||.|..||+|+.++..
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~   81 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQP   81 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcH
Confidence            5699999999999999999999999999999863

>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT

Probab=89.90  E-value=6.9  Score=40.86  Aligned_cols=165  Identities=12%  Similarity=0.128  Sum_probs=87.6

Q ss_pred             EEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCC----
Q 013218          242 HYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQH----  317 (447)
Q Consensus       242 ~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~----  317 (447)
                      +....+++..+.+..+..         +.|++++++-|++.+|.++  ++..  +   . .....+.+++.|+...    
T Consensus       231 ~~~~~~~~~~l~~~a~~~---------g~T~ndvllaa~~~al~~~--~~~~--~---~-~~~~~i~~~~pv~~R~~~~~  293 (446)
T TIGR02946       231 FAAQSLPLADVKAVAKAF---------GVTINDVVLAAVAGALRRY--LEER--G---E-LPDDPLVAMVPVSLRPMEDD  293 (446)
T ss_pred             EEeeccCHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHH--HHHc--C---C-CCCCceEEEEeeeccccccC
Confidence            345567777776665553         8899999999999999875  2211  1   1 1123466777776321    


Q ss_pred             -------CeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCC-------------CCCC-------------CCCCCeEEEE
Q 013218          318 -------GLAVPNIKNVQSLSILEITKELSRLQQLAKDNE-------------LNPA-------------DNSGGTITLS  364 (447)
Q Consensus       318 -------Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~-------------l~~~-------------~~~~gtftIS  364 (447)
                             |.+...+.- ...+..+...++++....+|+..             +.|.             ....-+++||
T Consensus       294 ~~~~N~~~~~~~~l~~-~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~S  372 (446)
T TIGR02946       294 SEGGNQVSAVLVPLPT-GIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVIS  372 (446)
T ss_pred             CCCCCEEEEEEecCCC-CCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEe
Confidence                   122222221 22334444455555444444321             0010             0112478999


Q ss_pred             ecCCCCC---------cccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHH
Q 013218          365 NIGAIGG---------KFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQL  435 (447)
Q Consensus       365 nlg~~G~---------~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~  435 (447)
                      |++....         ..+.++..+.....++++-...      +|      .|.+++++|-.++..  ..+|.+.|++.
T Consensus       373 Nvpg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~sy------~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~  438 (446)
T TIGR02946       373 NVPGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTSY------NG------QLDFGLLADRDAVPD--PQELADALEAA  438 (446)
T ss_pred             CCCCCCcccEecCeeEEEeeccccccCCCeEEEEEEec------CC------eEEEEEeechhhCCC--HHHHHHHHHHH
Confidence            9975421         1222222211112233332221      33      488999999988874  77788877777


Q ss_pred             hhC
Q 013218          436 IEN  438 (447)
Q Consensus       436 Le~  438 (447)
                      |++
T Consensus       439 l~~  441 (446)
T TIGR02946       439 LEE  441 (446)
T ss_pred             HHH
Confidence            764

This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=89.89  E-value=0.42  Score=49.53  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=32.9

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ...|.++.+|+|.+++|++||.|+.||+|+.|++.
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~   95 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPT   95 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcH
Confidence            67899999999999999999999999999999864

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=89.68  E-value=0.42  Score=48.12  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=32.5

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ...|.++.+|+|.++++++||.|..|++|+.++..
T Consensus        43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~   77 (331)
T PRK03598         43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA   77 (331)
T ss_pred             EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            56899999999999999999999999999999753

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=89.55  E-value=0.52  Score=49.73  Aligned_cols=44  Identities=30%  Similarity=0.321  Sum_probs=36.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEee
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH   82 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v   82 (447)
                      |.--+..|++||+|++||+|++-.. -....+.||.+|+|..|..
T Consensus        39 G~~~~~~V~~GD~V~~Gq~I~~~~~-~~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         39 GLRPKMKVKEGDKVKKGQPLFEDKK-NPGVKFTSPASGTVVAINR   82 (448)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEcc
Confidence            5556789999999999999996642 2568899999999999943

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=89.48  E-value=0.53  Score=42.07  Aligned_cols=43  Identities=28%  Similarity=0.305  Sum_probs=37.4

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL   81 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~   81 (447)
                      ...++. =++|-.|.+||.++.+|+-|+..+|.+|.+|.|.+|.
T Consensus        82 vv~veL-Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiN  124 (172)
T KOG3373|consen   82 VVYVEL-PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEIN  124 (172)
T ss_pred             eEEEEc-CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEec
Confidence            333443 5789999999999999999999999999999999985

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=88.29  E-value=0.45  Score=37.39  Aligned_cols=30  Identities=23%  Similarity=0.372  Sum_probs=21.9

Q ss_pred             CceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218           35 IAECELLKWFVKEGDEIEEFQPLCAVQSDK   64 (447)
Q Consensus        35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K   64 (447)
                      ++.+.=+.++++.||.|++||+|++|=++.
T Consensus        28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   28 IDPAVGIELHKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred             cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence            444556789999999999999999986554

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=88.25  E-value=1.2  Score=40.71  Aligned_cols=60  Identities=13%  Similarity=0.258  Sum_probs=48.4

Q ss_pred             ceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218           36 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------   80 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~----g~~l~~iet~K~~~~i~ap~~G~i~~~-------------------------------   80 (447)
                      -.|+++.+ -++-|.|=.    ||-+++.=++   ..|.||++|+|..+                               
T Consensus        27 ~~G~vi~L-~~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiLIHiGiDTV~L~G~  102 (169)
T PRK09439         27 LSGEIVNI-EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE  102 (169)
T ss_pred             CCeEEEEh-HHCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEcCCCCEEEEEeCCCcEEEEEEeecccccCCC
Confidence            56888877 556665554    8888887765   68899999999877                               


Q ss_pred             ----eeCCCCeeecccEEEEEec
Q 013218           81 ----LHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        81 ----~v~~g~~v~~G~~l~~i~~   99 (447)
                          ++++||.|..||+|+.++-
T Consensus       103 gF~~~Vk~Gd~Vk~G~~L~~~D~  125 (169)
T PRK09439        103 GFKRIAEEGQRVKVGDPIIEFDL  125 (169)
T ss_pred             ceEEEecCCCEEeCCCEEEEEcH
Confidence                6889999999999999874

>PF13437 HlyD_3: HlyD family secretion protein

Probab=88.23  E-value=0.91  Score=37.36  Aligned_cols=27  Identities=19%  Similarity=0.275  Sum_probs=25.2

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQS   62 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet   62 (447)
                      .+|.|..+.+++|+.|..|++|++|..
T Consensus         6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~   32 (105)
T PF13437_consen    6 FDGVVVSINVQPGEVVSAGQPLAEIVD   32 (105)
T ss_pred             CCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence            579999999999999999999999974

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=87.92  E-value=0.66  Score=45.02  Aligned_cols=36  Identities=14%  Similarity=0.135  Sum_probs=32.0

Q ss_pred             eEEeCCCCeEEEE-------EeeCCCCeeecccEEEEEecCCC
Q 013218           67 IEITSRYKGKVAQ-------LLHAPGNIVKVGETLLKLVVGDS  102 (447)
Q Consensus        67 ~~i~ap~~G~i~~-------~~v~~g~~v~~G~~l~~i~~~~~  102 (447)
                      ..|.||..|++.+       +++++||.|..||+|+.|+....
T Consensus       198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKm  240 (274)
T PLN02983        198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKL  240 (274)
T ss_pred             CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeece
Confidence            3489999999999       59999999999999999997643

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=87.58  E-value=1.8  Score=43.00  Aligned_cols=42  Identities=29%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             EEEEEEcCCCCeecCCCeEEEEEe--CceeeEEeCCCCeEEEEE
Q 013218           39 ELLKWFVKEGDEIEEFQPLCAVQS--DKATIEITSRYKGKVAQL   80 (447)
Q Consensus        39 ~i~~w~v~~Gd~V~~g~~l~~iet--~K~~~~i~ap~~G~i~~~   80 (447)
                      =+.+..++.||.|++||+|++|-.  .....++.||.+|+|.-.
T Consensus       240 Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         240 GLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             eEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            356677888888888888888841  113445788888888665

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=87.54  E-value=0.74  Score=47.75  Aligned_cols=44  Identities=11%  Similarity=0.135  Sum_probs=37.1

Q ss_pred             eEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           56 PLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        56 ~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..+.|+. .-..+|.+..+|+|.++++++||.|..||+|+.|++.
T Consensus        56 ~~G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~   99 (397)
T PRK15030         56 LPGRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA   99 (397)
T ss_pred             EEEEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCH
Confidence            4455653 4467899999999999999999999999999999753

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=87.52  E-value=1.6  Score=47.84  Aligned_cols=36  Identities=31%  Similarity=0.360  Sum_probs=32.9

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ...|.||.+|+|.++.+++|+.|..||+|+.++...
T Consensus       522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamK  557 (592)
T PRK09282        522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMK  557 (592)
T ss_pred             CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence            356999999999999999999999999999998654

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=87.45  E-value=1.2  Score=38.94  Aligned_cols=60  Identities=18%  Similarity=0.270  Sum_probs=41.6

Q ss_pred             ceEEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218           36 AECELLKWFVKEGDEI----EEFQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------   80 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V----~~g~~l~~iet~K~~~~i~ap~~G~i~~~-------------------------------   80 (447)
                      ..|+++.+ -+.-|.+    --|+.++..=++   ..|.||++|+|..+                               
T Consensus         9 v~G~vi~l-~~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~   84 (132)
T PF00358_consen    9 VSGKVIPL-EEVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGE   84 (132)
T ss_dssp             SSEEEEEG-GGSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTT
T ss_pred             CCcEEEEh-hhCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCc
Confidence            34666654 3455555    336778776554   36889999988887                               


Q ss_pred             ----eeCCCCeeecccEEEEEec
Q 013218           81 ----LHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        81 ----~v~~g~~v~~G~~l~~i~~   99 (447)
                          ++++||+|..||+|+.+..
T Consensus        85 gF~~~v~~G~~V~~G~~L~~~D~  107 (132)
T PF00358_consen   85 GFETLVKEGDKVKAGQPLIEFDL  107 (132)
T ss_dssp             TEEESS-TTSEE-TTEEEEEE-H
T ss_pred             ceEEEEeCCCEEECCCEEEEEcH
Confidence                7779999999999999874

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=87.42  E-value=0.57  Score=42.17  Aligned_cols=27  Identities=22%  Similarity=0.384  Sum_probs=24.5

Q ss_pred             CceEEEEEEEcCCCCeecCCCeEEEEE
Q 013218           35 IAECELLKWFVKEGDEIEEFQPLCAVQ   61 (447)
Q Consensus        35 ~~~g~i~~w~v~~Gd~V~~g~~l~~ie   61 (447)
                      -.+|+|.+|+++.||.|..||+|++|+
T Consensus       130 ~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       130 EVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            357899999999999999999999985

The gene name is accB or fabE.

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=87.35  E-value=0.6  Score=49.12  Aligned_cols=43  Identities=19%  Similarity=0.160  Sum_probs=36.5

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL   81 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~   81 (447)
                      |.--+..|++||+|++||+|++.+ ......+.||.+|+|.+|.
T Consensus        40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            444568899999999999999984 4468899999999999873

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=87.31  E-value=1.2  Score=46.52  Aligned_cols=46  Identities=20%  Similarity=0.268  Sum_probs=37.3

Q ss_pred             CeEEEEEeCc-eeeEEeCCCCeEEEEEe-eCCCCeeecccEEEEEecC
Q 013218           55 QPLCAVQSDK-ATIEITSRYKGKVAQLL-HAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        55 ~~l~~iet~K-~~~~i~ap~~G~i~~~~-v~~g~~v~~G~~l~~i~~~  100 (447)
                      +..+.|+.+. ....|.++.+|.|.+++ +.+||.|..||+|+.|...
T Consensus       111 ~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~sp  158 (409)
T PRK09783        111 TFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP  158 (409)
T ss_pred             EEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCH
Confidence            3445665443 34579999999999998 9999999999999999854

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=87.28  E-value=1.6  Score=37.72  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=16.9

Q ss_pred             eeCCCCeeecccEEEEEec
Q 013218           81 LHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        81 ~v~~g~~v~~G~~l~~i~~   99 (447)
                      ++++||.|..||+|+.+..
T Consensus        85 ~vk~Gd~V~~G~~l~~~D~  103 (124)
T cd00210          85 HVEEGQRVKQGDKLLEFDL  103 (124)
T ss_pred             EecCCCEEcCCCEEEEEcH
Confidence            6889999999999999874

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=86.97  E-value=0.69  Score=41.61  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.6

Q ss_pred             CceEEEEEEEcCCCCeecCCCeEEEEE
Q 013218           35 IAECELLKWFVKEGDEIEEFQPLCAVQ   61 (447)
Q Consensus        35 ~~~g~i~~w~v~~Gd~V~~g~~l~~ie   61 (447)
                      -.+|+|.+|+++.|+.|..||+|++|+
T Consensus       129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        129 DKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            358999999999999999999999884

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=86.55  E-value=1.8  Score=37.32  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=17.5

Q ss_pred             EeeCCCCeeecccEEEEEec
Q 013218           80 LLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        80 ~~v~~g~~v~~G~~l~~i~~   99 (447)
                      .++++||+|..||+|+.+..
T Consensus        84 ~~v~~Gd~V~~G~~l~~~D~  103 (121)
T TIGR00830        84 SHVEEGQRVKKGDPLLEFDL  103 (121)
T ss_pred             EEecCCCEEcCCCEEEEEcH
Confidence            37889999999999999874

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=85.99  E-value=1.6  Score=39.20  Aligned_cols=44  Identities=25%  Similarity=0.349  Sum_probs=33.0

Q ss_pred             CCeEEEEEeCceeeEEeCCCCeEEEEE-----------------------------------eeCCCCeeecccEEEEEe
Q 013218           54 FQPLCAVQSDKATIEITSRYKGKVAQL-----------------------------------LHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        54 g~~l~~iet~K~~~~i~ap~~G~i~~~-----------------------------------~v~~g~~v~~G~~l~~i~   98 (447)
                      ||-++..=++   ..+.||++|+|..+                                   ++++||.|..||+|..+.
T Consensus        33 GdGiAI~P~~---g~vvAPvdG~v~~iFpTkHAigi~t~~GvEiLiHiGiDTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fD  109 (156)
T COG2190          33 GDGVAIKPSE---GEVVAPVDGTVVLIFPTKHAIGIETDEGVEILIHIGIDTVKLNGEGFESLVKEGDKVKAGDPLLEFD  109 (156)
T ss_pred             cCcEEEecCC---CeEEeccCcEEEEEeeCCcEEEEEcCCCcEEEEEeceeeEEECCcceEEEeeCCCEEccCCEEEEEC
Confidence            5666655443   56777777776665                                   888999999999999987


Q ss_pred             cC
Q 013218           99 VG  100 (447)
Q Consensus        99 ~~  100 (447)
                      -+
T Consensus       110 l~  111 (156)
T COG2190         110 LD  111 (156)
T ss_pred             HH
Confidence            43

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=85.30  E-value=2  Score=37.38  Aligned_cols=45  Identities=18%  Similarity=0.324  Sum_probs=39.4

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EeCCCCeEEEEE
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQL   80 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~-i~ap~~G~i~~~   80 (447)
                      .||-++..-+..|+.|.+||+++-+.|-|..+- +++|.+|++.-+
T Consensus        98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi  143 (161)
T COG4072          98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI  143 (161)
T ss_pred             cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence            578888899999999999999999999997765 899999998655

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=85.27  E-value=1.8  Score=48.26  Aligned_cols=43  Identities=21%  Similarity=0.246  Sum_probs=35.8

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL   81 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~   81 (447)
                      |.--+..|++||+|.+||+|++-. .-....|.||.+|+|..|.
T Consensus        46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence            444668899999999999999763 3367889999999999873

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=85.17  E-value=0.96  Score=47.74  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=26.5

Q ss_pred             CceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218           35 IAECELLKWFVKEGDEIEEFQPLCAVQSD   63 (447)
Q Consensus        35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~   63 (447)
                      ..+|+|.+|++++||.|..|++|++|+.+
T Consensus       140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~  168 (463)
T PLN02226        140 PASGVIQEFLVKEGDTVEPGTKVAIISKS  168 (463)
T ss_pred             CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence            36899999999999999999999999854

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=85.04  E-value=2.1  Score=42.15  Aligned_cols=58  Identities=24%  Similarity=0.302  Sum_probs=46.8

Q ss_pred             EEEEEEcCCCCeecCCCeE--EEEE-eC-ceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           39 ELLKWFVKEGDEIEEFQPL--CAVQ-SD-KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        39 ~i~~w~v~~Gd~V~~g~~l--~~ie-t~-K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      =+....++.||.|++||+|  .++- .. ....++.||.+|+|  +...+.-.|..|+.|+.+.
T Consensus       229 G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~  290 (292)
T PF04952_consen  229 GLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVA  290 (292)
T ss_dssp             EEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEE
T ss_pred             EEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEe
Confidence            3568999999999999999  5543 22 23458999999999  4568888999999998875

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=84.97  E-value=1.2  Score=48.65  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=33.6

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  102 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~  102 (447)
                      ...|.||..|.|.+++|++||.|..||+|+.++...-
T Consensus       517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKm  553 (582)
T TIGR01108       517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKM  553 (582)
T ss_pred             CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEEeccc
Confidence            3579999999999999999999999999999997643

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=84.83  E-value=2.2  Score=39.61  Aligned_cols=53  Identities=25%  Similarity=0.356  Sum_probs=41.1

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEE
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLL   95 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~   95 (447)
                      +.|.. .+++|+.+++||.+.-++-. .++++--|.+   .++.+++|+.|..|+.|.
T Consensus       130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli  182 (189)
T TIGR00164       130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL  182 (189)
T ss_pred             cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence            34444 36899999999999999966 5566666665   377899999999999654

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=84.81  E-value=4.2  Score=41.12  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=26.2

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSD   63 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~   63 (447)
                      ..|+|.+++|++||+|+.|+.|+.|++.
T Consensus       122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g  149 (457)
T KOG0559|consen  122 ASGVITELLVKDGDTVTPGQKLAKISPG  149 (457)
T ss_pred             CcceeeEEecCCCCcccCCceeEEecCC
Confidence            5799999999999999999999999865

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=84.36  E-value=0.91  Score=48.00  Aligned_cols=31  Identities=10%  Similarity=0.144  Sum_probs=26.9

Q ss_pred             CceEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 013218           35 IAECELLKWFVKEGDEIEEFQPLCAVQSDKA   65 (447)
Q Consensus        35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~   65 (447)
                      ...|.|.+++|++||.|++||+|+.++....
T Consensus        65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~   95 (457)
T TIGR01000        65 TSNNAIKENYLKENKFVKKGDLLVVYDNGNE   95 (457)
T ss_pred             CCCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence            3569999999999999999999999975443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=82.96  E-value=1.6  Score=47.75  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=32.8

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ...|.||..|.|.++++++||.|..||+|+.++...
T Consensus       524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamK  559 (593)
T PRK14040        524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMK  559 (593)
T ss_pred             CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCc
Confidence            347999999999999999999999999999998654

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=82.84  E-value=2.9  Score=39.40  Aligned_cols=54  Identities=26%  Similarity=0.390  Sum_probs=41.9

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccE-EEE
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET-LLK   96 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~-l~~   96 (447)
                      +.|+.| +++|+.+++||.+..++-. .++++--|.+   .++.|++||+|..|+. |++
T Consensus       150 r~I~~~-~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~  204 (206)
T PRK05305        150 RRIVCY-VKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR  204 (206)
T ss_pred             cEEEEe-CCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence            455544 6899999999999999966 4566666655   2789999999999984 444

>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics

Probab=82.61  E-value=16  Score=34.80  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=26.9

Q ss_pred             EEEEEEecccccChHHHHHHHHHHHHHhhCHH
Q 013218          409 MTVNIGADHRVLDGATVAKFCNEWKQLIENPE  440 (447)
Q Consensus       409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~  440 (447)
                      ..+-+.+||-++||.-...|+++|.+++++..
T Consensus       129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~~  160 (301)
T PF00668_consen  129 YFLLISFHHIICDGWSLNILLRELLQAYAGLS  160 (301)
T ss_dssp             EEEEEEEEGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred             chhcccccccccccccchhhhhhhHHhhhccc
Confidence            56788999999999999999999999888765

This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=82.21  E-value=3.6  Score=40.76  Aligned_cols=46  Identities=28%  Similarity=0.407  Sum_probs=37.0

Q ss_pred             CCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           53 EFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        53 ~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      .-.....++. .....+.++..|.|.++++++||.|..|++|+.++.
T Consensus        54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             ceeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence            3344455554 334478888999999999999999999999999986

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=82.11  E-value=1.8  Score=45.27  Aligned_cols=33  Identities=36%  Similarity=0.549  Sum_probs=30.4

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      ..|+||++|+|..+.+.+|+.|..|++|+.|..
T Consensus       254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~  286 (421)
T TIGR03794       254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLEV  286 (421)
T ss_pred             CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEc
Confidence            359999999999999999999999999999954

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=82.03  E-value=5.1  Score=47.31  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=32.4

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..|.||..|+|.++++++||.|..||+|+.++...
T Consensus      1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamK 1111 (1146)
T PRK12999       1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMK 1111 (1146)
T ss_pred             ceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccc
Confidence            56999999999999999999999999999998654

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=82.01  E-value=2.4  Score=42.66  Aligned_cols=29  Identities=21%  Similarity=0.215  Sum_probs=26.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDK   64 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K   64 (447)
                      .+|+|.++++++||.|..|++|+.|+.+.
T Consensus        52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875         52 AAGTLRRQVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            57999999999999999999999998654

>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=81.63  E-value=1.3  Score=35.66  Aligned_cols=22  Identities=27%  Similarity=0.661  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCeecCCCeEEEEE
Q 013218           40 LLKWFVKEGDEIEEFQPLCAVQ   61 (447)
Q Consensus        40 i~~w~v~~Gd~V~~g~~l~~ie   61 (447)
                      =++|++++|+.|++||+|++++
T Consensus        46 ~v~~~~~dG~~v~~g~~i~~i~   67 (88)
T PF02749_consen   46 EVEWLVKDGDRVEPGDVILEIE   67 (88)
T ss_dssp             EEEESS-TT-EEETTCEEEEEE
T ss_pred             EEEEEeCCCCCccCCcEEEEEE
Confidence            4679999999999999999997

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....

>PRK12784 hypothetical protein; Provisional

Probab=81.36  E-value=2.6  Score=33.01  Aligned_cols=35  Identities=29%  Similarity=0.403  Sum_probs=32.4

Q ss_pred             EEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218           68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  102 (447)
Q Consensus        68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~  102 (447)
                      +|.||+-|++.++++.+++.|-.=++|+.|+..+.
T Consensus         7 ~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg   41 (84)
T PRK12784          7 EICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG   41 (84)
T ss_pred             hhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence            58999999999999999999999999999987654

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=81.07  E-value=1.9  Score=46.08  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             EEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      .+.||..|+|..+.|++|++|..||+|+.++..
T Consensus       577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAM  609 (645)
T COG4770         577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAM  609 (645)
T ss_pred             ceecCCCceEEEEEecCCCEecCCCeEEEeEeh
Confidence            489999999999999999999999999999864

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=81.01  E-value=8  Score=43.21  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=30.3

Q ss_pred             EeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      |-||..|+|.++.|++|+.|..||+|+.++..
T Consensus      1082 igApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAM 1113 (1149)
T COG1038        1082 IGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAM 1113 (1149)
T ss_pred             cCCCCCCceEEEEEccCCeecCCCeeeehhhh
Confidence            88999999999999999999999999999864

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=81.00  E-value=1.6  Score=45.56  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=27.9

Q ss_pred             CCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218           72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  102 (447)
Q Consensus        72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~  102 (447)
                      -..|.|.+|++++||.|..||+|++|+++..
T Consensus        14 ~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa   44 (404)
T COG0508          14 MTEGTIVEWLKKVGDKVKEGDVLVEVETDKA   44 (404)
T ss_pred             cceEEEEEEecCCCCeecCCCeeEEEEcCce
Confidence            3589999999999999999999999997654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	447
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		6e-63
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		2e-59
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		3e-41
3rqc_A	224	Crystal Structure Of The Catalytic Core Of The 2-Ox		1e-30
3l60_A	250	Crystal Structure Of Branched-Chain Alpha-Keto Acid		7e-26
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		4e-23
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		7e-21
3b8k_A	239	Structure Of The Truncated Human Dihydrolipoyl Acet		4e-18
1dpc_A	243	Crystallographic And Enzymatic Investigations On Th		4e-18
1eaa_A	243	Atomic Structure Of The Cubic Core Of The Pyruvate		2e-17
1dpd_A	243	Crystallographic And Enzymatic Investigations On Th		4e-17
1dpb_A	243	Crystallographic And Enzymatic Investigations On Th		3e-16
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		2e-13
1k8o_A	93	Solution Structure Of The Lipoic Acid-Bearing Domai		8e-13
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		2e-11
2xt6_A	1113	Crystal Structure Of Mycobacterium Smegmatis Alpha-		6e-08
3rnm_E	58	The Crystal Structure Of The Subunit Binding Of Hum		1e-05
2coo_A	70	Solution Structure Of The E3_binding Domain Of Dihy		1e-05
1zwv_A	58	Solution Structure Of The Subunit Binding Domain (H		5e-05
1w4f_A	47	Peripheral-Subunit Binding Domains From Mesophilic,		9e-04

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score =  238 bits (607), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 147/451 (32%), Positives = 233/451 (51%), Gaps = 63/451 (13%)
Query: 28  LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 87
           L   GEGI E E++KWFVK GDE+ E   LC VQ+DKA +EI S  KGKV ++L   G +
Sbjct: 7   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66
Query: 88  VKVGETLLKLVVGDSAVPTPSSDVLESVKPPGSEN--------------------SPDSK 127
             VG+TL+ L                    PG EN                    S + K
Sbjct: 67  ATVGQTLITL------------------DAPGYENMTFKGQEQEEAKKEEKTETVSKEEK 108
Query: 128 LNKDTVGG------------VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV 175
           ++                  V+A P+VR  A+  G+++  V  TGK+GRVLKED+  +  
Sbjct: 109 VDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 168
Query: 176 QKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA 235
                   +    +A    +    E  +P+T  +           + G +R + K M  +
Sbjct: 169 GGAKPAPAAAEEKAAPAAAKPATTEGEFPETREK-----------MSGIRRAIAKAMVHS 217
Query: 236 AKI-PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF 294
               PH   ++E +   LV  +  F+   ++  IK TFLP ++K+L  A+ +YP +N+  
Sbjct: 218 KHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSI 277
Query: 295 NEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPA 354
           ++E+ E+I K  +NIGIA  T  GL VP IK+     I  + +E++ L + A+D +L P 
Sbjct: 278 DDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPG 337
Query: 355 DNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIG 414
           +  G + T++NIG+ GG++  P++N PEVAI+ +GRI + P +  DG +  +P++ +++ 
Sbjct: 338 EMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKP-IVRDGEIVAAPMLALSLS 396
Query: 415 ADHRVLDGATVAKFCNEWKQLIENPELLLLQ 445
            DHR++DGAT  K  N  K+L+ +PELLL++
Sbjct: 397 FDHRMIDGATAQKALNHIKRLLSDPELLLME 427

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score =  226 bits (576), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/232 (46%), Positives = 155/232 (66%)
Query: 216 DKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPS 275
           D+T P++GF + MVKTMS A KIPHF Y +E++   LVKL+   +       IK +F+P 
Sbjct: 31  DRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPF 90
Query: 276 LIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEI 335
            +K+ S+ + ++P +N+  +E    +  K SHNIGIAM T+ GL VPN+KNVQ  SI EI
Sbjct: 91  FLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEI 150
Query: 336 TKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVP 395
             EL+RLQ+L    +L+  D  GGT TLSNIG+IGG +  P++  PEVAI A+G I+ +P
Sbjct: 151 ATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALP 210
Query: 396 RLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR 447
           R ++ G V  + IM V+  ADHR++DGATV++F N WK  +ENP  +LL ++
Sbjct: 211 RFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 262

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 139/225 (61%), Gaps = 2/225 (0%)
Query: 221 LRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKS 279
           + G +R + K M  +    PH   ++E +   LV  +  F+   ++  IK TFLP ++K+
Sbjct: 19  MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKA 78
Query: 280 LSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKEL 339
           L  A+ +YP +N+  ++E+ E+I K  +NIGIA  T  GL VP IK+     I  + +E+
Sbjct: 79  LVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEI 138
Query: 340 SRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSD 399
           + L + A+D +L P +  G + T++NIG+ GG++  P++N PEVAI+ +GRI + P +  
Sbjct: 139 NELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKP-IVR 197
Query: 400 DGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444
           DG +  +P++ +++  DHR++DGAT  K  N  K+L+ +PELLL+
Sbjct: 198 DGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 242

>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 132/232 (56%), Gaps = 14/232 (6%)
Query: 216 DKTVPLRGFQRTMVKTMSMAAKI-PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLP 274
           ++ + + G +R +   M+ A +I PHF  +EE++  ++V +  S +  N    +   FL 
Sbjct: 6   EEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVT-GFLA 64
Query: 275 SLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILE 334
            ++ S+   + +YP++N+ ++E     ILK  +NIGIA+ T  GL V  IK+    S++E
Sbjct: 65  RIVPSI---LKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVE 121
Query: 335 ITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKV 394
           I+ E+S     A++N+L   +    T T++N+G IGG    P++N PEVAI+ + RI   
Sbjct: 122 ISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRI--- 178
Query: 395 PRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 446
             L  +G  Y    M +++  DHR++DGA   +F  + K++IE+P  ++ ++
Sbjct: 179 --LEREGRKY----MYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI 224

>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250

Iteration: 1
 Score =  115 bits (287), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 125/236 (52%), Gaps = 10/236 (4%)
Query: 214 PDDKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTF 272
           PD +  P+ G    M + M+++ K IP      E+ C  L++L+  F +  + P I  T 
Sbjct: 14  PDVR--PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS--AAPEI--TP 67
Query: 273 LPSLIKSLSMAMSKYPFMNSCFNE--ESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSL 330
               ++ L +A+     +NS + +  E  +V +    ++G   AT+ GL VP + + Q  
Sbjct: 68  FALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDK 127
Query: 331 SILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGR 390
           +  E+   ++ L   A++  L PA+  G T T+SN GA+G   G P++N PE AI+ +G 
Sbjct: 128 NTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGA 187
Query: 391 IEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 446
           I+  P +   G V   P MT+    DHRV+DGA VA+F  E + LIE+PE  LL +
Sbjct: 188 IKPRPVVV-GGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 124/230 (53%), Gaps = 5/230 (2%)
Query: 210 VKWYPDDKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNN-NSDPN 267
           V+    DK +P+ G ++ + K MS++ + IPH   + E++   LV+ + + +++   +  
Sbjct: 12  VRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEG 71
Query: 268 IKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNV 327
              T+    IK+++ A+ ++P +NS +  +  ++I   + NI IA+A    L VP IKN 
Sbjct: 72  YSLTYFAFFIKAVAQALKEFPQLNSTWAGD--KIIEHANINISIAIAAGDLLYVPVIKNA 129
Query: 328 QSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIA 387
              SI  I +E+S L   A++ +L+ AD  GGT T+++ G+ G      ++N P+ AI+ 
Sbjct: 130 DEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQ 189
Query: 388 MGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIE 437
           +  I K P + DD  +    ++ + +  DHR+LDG    KF    K  +E
Sbjct: 190 VESIVKRPVIIDD-MIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVE 238

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
Query: 246 EINCDALVKLKASF-QNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK 304
           E+N   ++ L+  + +       I+  F+   +K++  A+ +YP +N+  + +  +V+  
Sbjct: 35  EVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGD--DVVYH 92
Query: 305 GSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLS 364
              ++ +A++T  GL  P +++V +L + +I K++  L    +D +L   D +GG  T++
Sbjct: 93  NYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTIT 152
Query: 365 NIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGAT 424
           N G  G     P++N P+ AI+ M  I+  P ++ +G V   P+M + +  DHR++DG  
Sbjct: 153 NGGVFGSLMSTPIINPPQSAILGMHAIKDRP-MAVNGQVEILPMMYLALSYDHRLIDGRE 211
Query: 425 VAKFCNEWKQLIENPELLLLQM 446
              F    K+L+E+P  LLL +
Sbjct: 212 SVGFLVTIKELLEDPTRLLLDV 233

>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 219 VPLRGFQRTMV-KTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLI 277
           +P+   +R +  + M     IPH++   ++N   ++ ++    N   +   K +    +I
Sbjct: 15  IPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKEL-NKILEGRSKISVNDFII 73
Query: 278 KSLSMAMSKYPFMNSCFNEESLEVILKGSH--NIGIAMATQHGLAVPNIKNVQSLSILEI 335
           K+ ++A  K P  NS +    ++ +++ +H  ++ +A++T  GL  P + N     +  I
Sbjct: 74  KASALACLKVPEANSSW----MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETI 129
Query: 336 TKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEK-- 393
             ++  L   A++ +L P +  GGT T+SN+G  G K  + ++N P+  I+A+G  E   
Sbjct: 130 ANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKL 189
Query: 394 VPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444
           VP  ++ G    S +M+V +  DHRV+DGA  A++  E+++ +E P  +LL
Sbjct: 190 VPADNEKGFDVAS-MMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239

>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 3/208 (1%)
Query: 238 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 297
           +PH    E  +   L   + + +       +K T LP L+K+ +  + + P  NS     
Sbjct: 38  VPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPS 97
Query: 298 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNS 357
              +I K   +IG A+ T  GL VP I+NV   S+L++  E + L + A+  +L      
Sbjct: 98  GQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQ 157
Query: 358 GGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY-PSPIMTVNIGAD 416
           G   T+S++G IGG    P++N PEVAI+ + +    P    DG  + P  ++ +++  D
Sbjct: 158 GACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVW--DGKAFQPRLMLPLSLSYD 215
Query: 417 HRVLDGATVAKFCNEWKQLIENPELLLL 444
           HRV+DGA  A+F      L+ +   +LL
Sbjct: 216 HRVIDGAAAARFTKRLGDLLADIRAILL 243

>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 3/208 (1%)
Query: 238 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 297
           +PH    E  +   L   + + +       +K T LP L+K+ +  + + P  NS     
Sbjct: 38  VPHVTQFESADITELEAFRVAQKAVAKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPS 97
Query: 298 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNS 357
              +I K   +IG A+ T  GL VP I+NV   S+L++  E + L + A+  +L      
Sbjct: 98  GQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQ 157
Query: 358 GGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY-PSPIMTVNIGAD 416
           G   T+S++G IGG    P++N PEVAI+ + +    P    DG  + P  ++ +++  D
Sbjct: 158 GACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVW--DGKAFQPRLMLPLSLSYD 215
Query: 417 HRVLDGATVAKFCNEWKQLIENPELLLL 444
           HRV++GA  A+F      L+ +   +LL
Sbjct: 216 HRVINGAAAARFTKRLGDLLADIRAILL 243

>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 3/208 (1%)
Query: 238 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 297
           +PH    E  +   L   + + +       +K T LP L+K+ +  + + P  NS     
Sbjct: 38  VPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPS 97
Query: 298 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNS 357
              +I K   +IG A+ T  GL VP I+NV   S+L++  E + L + A+  +L      
Sbjct: 98  GQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQ 157
Query: 358 GGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY-PSPIMTVNIGAD 416
           G   T++++G IGG    P++N PEVAI+ + +    P    DG  + P  ++ +++  D
Sbjct: 158 GACFTIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPVW--DGKAFQPRLMLPLSLSYD 215
Query: 417 HRVLDGATVAKFCNEWKQLIENPELLLL 444
           HRV++GA  A+F      L+ +   +LL
Sbjct: 216 HRVINGAAAARFTKRLGDLLADIRAILL 243

>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 3/208 (1%)
Query: 238 IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE 297
           +PH    E  +   L   + + +       +K T LP L+K+ +  + + P  NS     
Sbjct: 38  VPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPS 97
Query: 298 SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNS 357
              +I K   +IG A+ T  GL VP I+NV   S+L++  E + L + A+  +L      
Sbjct: 98  GQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQ 157
Query: 358 GGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVY-PSPIMTVNIGAD 416
           G   T+S++G IGG    P++N PEVAI+ + +    P    DG  + P  ++ +++  D
Sbjct: 158 GACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVW--DGKAFQPRLMLPLSLSYD 215
Query: 417 HRVLDGATVAKFCNEWKQLIENPELLLL 444
            RV++GA  A+F      L+ +   +LL
Sbjct: 216 CRVINGAAAARFTKRLGDLLADIRAILL 243

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 47/70 (67%)
Query: 28 LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 87
          L   GEGI E E++KWFVK GDE+ E   LC VQ+DKA +EI S  KGKV ++L   G +
Sbjct: 6  LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65
Query: 88 VKVGETLLKL 97
            VG+TL+ L
Sbjct: 66 ATVGQTLITL 75

>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of The E2 Component Of Human, Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 93

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
          +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L +
Sbjct: 4  VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 63
Query: 83 APGNIVKVGETLLKL 97
             +I  VG+ L+ +
Sbjct: 64 NLDDIAYVGKPLVDI 78

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/70 (44%), Positives = 48/70 (68%)
Query: 28 LAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI 87
          L   GEG+ E E+++W VKEGD +E+ Q L  V +DK T++I S  +GK+ ++L+  G +
Sbjct: 6  LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65
Query: 88 VKVGETLLKL 97
          V VG TLL++
Sbjct: 66 VPVGSTLLQI 75

>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 18/189 (9%)
Query: 269 KHTFLPSLIKSLSMAMSKYPFMNSCFN--EESLEVILKGSHNIGIAMATQ-----HGLAV 321
           K +F   L  ++  A+ K+P MN  F   +     I     N+G+A+  Q       L V
Sbjct: 40  KISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKDGNRSLVV 99
Query: 322 PNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLP 381
             IK  +++   +       + + A+D +L   D SG TI+L+N G +G     P L   
Sbjct: 100 AAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQG 159
Query: 382 EVAIIAMGRIE--------KVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWK 433
           + AII  G +E           R++D G      ++T+    DHR++ GA    F     
Sbjct: 160 QGAIIGAGAMEYPAEFQGASEERIADLG---IGKLITLTSTYDHRIIQGAESGDFLRTIH 216
Query: 434 QLIENPELL 442
           QL+ + +  
Sbjct: 217 QLLLDDDFF 225

>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 58

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 137 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173
           LATP VRNLA    I L +V  +GKDGR+LKED+L Y
Sbjct: 9   LATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNY 45

>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of Dihydrolipoamide Branched Chaintransacylase Length = 70

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA----DGPSTA 186
            LATP VR LA    I L +V  +GKDGR+LKED+L Y  ++  A     GPS+ 
Sbjct: 16  TLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSGPSSG 70

>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd) Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 58

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 26/37 (70%)
Query: 137 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173
           LATP VR LA    I L +V  +GKDGR+LKED+L Y
Sbjct: 9   LATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNY 45

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	1e-117
2ii3_A	262	Lipoamide acyltransferase component of branched-C	1e-108
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	5e-74
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	2e-71
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	6e-61
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	4e-58
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	1e-45
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	9e-36
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	8e-33
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	1e-28
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	7e-26
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	1e-25
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	3e-25
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	8e-22
2coo_A	70	Lipoamide acyltransferase component of branched- c	9e-16
3rnm_E	58	Lipoamide acyltransferase component of branched-C	7e-14
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	9e-13
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	3e-12
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	8e-12
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	4e-11
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	6e-11
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	1e-10
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	5e-10
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	7e-10
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	8e-10
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	1e-09
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	1e-09
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	1e-09
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	2e-09
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	3e-09
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	4e-09
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	2e-08
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	2e-08
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	3e-08
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	1e-06
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	1e-05
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	4e-05
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	1e-04
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	1e-04
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	2e-04
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	3e-04
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	5e-04
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	6e-04
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	6e-04

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  348 bits (895), Expect = e-117
 Identities = 146/437 (33%), Positives = 232/437 (53%), Gaps = 27/437 (6%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
             +  L   GEGI E E++KWFVK GDE+ E   LC VQ+DKA +EI S  KGKV ++L 
Sbjct: 2   AFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILV 61

Query: 83  APGNIVKVGETLLKLVVGDSAVPTPSSDVLESVK--------------PPGSENSPDSKL 128
             G +  VG+TL+ L        T      E  K                 + N+P ++ 
Sbjct: 62  PEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEA 121

Query: 129 NKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASV 188
                  V+A P+VR  A+  G+++  V  TGK+GRVLKED+  +          +    
Sbjct: 122 EAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEK 181

Query: 189 SADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEI 247
           +A    +    E  +P+T              + G +R + K M  +    PH   ++E 
Sbjct: 182 AAPAAAKPATTEGEFPET-----------REKMSGIRRAIAKAMVHSKHTAPHVTLMDEA 230

Query: 248 NCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSH 307
           +   LV  +  F+   ++  IK TFLP ++K+L  A+ +YP +N+  ++E+ E+I K  +
Sbjct: 231 DVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYY 290

Query: 308 NIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIG 367
           NIGIA  T  GL VP IK+     I  + +E++ L + A+D +L P +  G + T++NIG
Sbjct: 291 NIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIG 350

Query: 368 AIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAK 427
           + GG++  P++N PEVAI+ +GRI + P +  DG +  +P++ +++  DHR++DGAT  K
Sbjct: 351 SAGGQWFTPVINHPEVAILGIGRIAEKPIV-RDGEIVAAPMLALSLSFDHRMIDGATAQK 409

Query: 428 FCNEWKQLIENPELLLL 444
             N  K+L+ +PELLL+
Sbjct: 410 ALNHIKRLLSDPELLLM 426

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  319 bits (821), Expect = e-108
 Identities = 109/233 (46%), Positives = 155/233 (66%)

Query: 215 DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLP 274
            D+T P++GF + MVKTMS A KIPHF Y +E++   LVKL+   +       IK +F+P
Sbjct: 30  KDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMP 89

Query: 275 SLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILE 334
             +K+ S+ + ++P +N+  +E    +  K SHNIGIAM T+ GL VPN+KNVQ  SI E
Sbjct: 90  FFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFE 149

Query: 335 ITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKV 394
           I  EL+RLQ+L    +L+  D  GGT TLSNIG+IGG +  P++  PEVAI A+G I+ +
Sbjct: 150 IATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKAL 209

Query: 395 PRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR 447
           PR ++ G V  + IM V+  ADHR++DGATV++F N WK  +ENP  +LL ++
Sbjct: 210 PRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK 262

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score =  231 bits (591), Expect = 5e-74
 Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 2/228 (0%)

Query: 218 TVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSL 276
            VP+    +     +  +   +PH    E  +   L   + + +       +K T LP L
Sbjct: 17  EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLL 76

Query: 277 IKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEIT 336
           +K+ +  + + P  NS        +I K   +IG A+ T  GL VP I+NV   S+L++ 
Sbjct: 77  LKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLA 136

Query: 337 KELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPR 396
            E + L + A+  +L      G   T+S++G IGG    P++N PEVAI+ + +    P 
Sbjct: 137 AEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPV 196

Query: 397 LSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444
             D     P  ++ +++  D RV++GA  A+F      L+ +   +LL
Sbjct: 197 W-DGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  225 bits (575), Expect = 2e-71
 Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 8/236 (3%)

Query: 214 PDDKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTF 272
                 P+ G    M + M+++ K IP      E+ C  L++L+  F         + T 
Sbjct: 12  AGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFV----SAAPEITP 67

Query: 273 LPSLIKSLSMAMSKYPFMNSCFNE--ESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSL 330
               ++ L +A+     +NS + +  E  +V +    ++G   AT+ GL VP + + Q  
Sbjct: 68  FALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDK 127

Query: 331 SILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGR 390
           +  E+   ++ L   A++  L PA+  G T T+SN GA+G   G P++N PE AI+ +G 
Sbjct: 128 NTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGA 187

Query: 391 IEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 446
           I+  P +   G V   P MT+    DHRV+DGA VA+F  E + LIE+PE  LL +
Sbjct: 188 IKPRPVV-VGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score =  197 bits (502), Expect = 6e-61
 Identities = 69/231 (29%), Positives = 125/231 (54%), Gaps = 14/231 (6%)

Query: 217 KTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPS 275
           + + + G +R +   M+ A   +PHF  +EE++  ++V +  S +      N K T    
Sbjct: 7   EILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK----ARNRKVTVTGF 62

Query: 276 LIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEI 335
           L + +   + +YP++N+ ++E     ILK  +NIGIA+ T  GL V  IK+    S++EI
Sbjct: 63  LARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEI 122

Query: 336 TKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVP 395
           + E+S     A++N+L   +    T T++N+G IGG    P++N PEVAI+ + RI +  
Sbjct: 123 SAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILERE 182

Query: 396 RLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 446
                        M +++  DHR++DGA   +F  + K++IE+P  ++ ++
Sbjct: 183 ---------GRKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI 224

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  190 bits (484), Expect = 4e-58
 Identities = 58/234 (24%), Positives = 117/234 (50%), Gaps = 7/234 (2%)

Query: 214 PDDKTVPLRGFQRTMVKTMSMAAK--IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHT 271
                +P+   +R + + +   +K  IPH++   ++N   ++ ++    N   +   K +
Sbjct: 10  GVFTDIPISNIRRVIAQRLM-QSKQTIPHYYLSIDVNMGEVLLVRKEL-NKILEGRSKIS 67

Query: 272 FLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLS 331
               +IK+ ++A  K P  NS + +    +      ++ +A++T  GL  P + N     
Sbjct: 68  VNDFIIKASALACLKVPEANSSWMDT--VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKG 125

Query: 332 ILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRI 391
           +  I  ++  L   A++ +L P +  GGT T+SN+G  G K  + ++N P+  I+A+G  
Sbjct: 126 VETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGAS 185

Query: 392 EKVPRLSDD-GNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444
           E     +D+      + +M+V +  DHRV+DGA  A++  E+++ +E P  +LL
Sbjct: 186 EDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score =  157 bits (400), Expect = 1e-45
 Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 11/232 (4%)

Query: 214 PDDKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKL----KASFQNNNSDPNI 268
             DK +P+ G ++ + K MS++ + IPH   + E++   LV+     K SF+        
Sbjct: 16  AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEE---GY 72

Query: 269 KHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQ 328
             T+    IK+++ A+ ++P +NS +  +  ++I   + NI IA+A    L VP IKN  
Sbjct: 73  SLTYFAFFIKAVAQALKEFPQLNSTWAGD--KIIEHANINISIAIAAGDLLYVPVIKNAD 130

Query: 329 SLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAM 388
             SI  I +E+S L   A++ +L+ AD  GGT T+++ G+ G      ++N P+ AI+ +
Sbjct: 131 EKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQV 190

Query: 389 GRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 440
             I K P +  D  +    ++ + +  DHR+LDG    KF    K  +E   
Sbjct: 191 ESIVKRP-VIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKIS 241

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score =  131 bits (331), Expect = 9e-36
 Identities = 56/205 (27%), Positives = 110/205 (53%), Gaps = 10/205 (4%)

Query: 246 EINCDALVKL----KASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEV 301
           E+N   ++ L      +F+  +    I+  F+   +K++  A+ +YP +N+  + +  +V
Sbjct: 35  EVNMKPIMDLRKQYGEAFEKRH---GIRLGFMSFYVKAVVEALKRYPEVNASIDGD--DV 89

Query: 302 ILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTI 361
           +     ++ +A++T  GL  P +++V +L + +I K++  L    +D +L   D +GG  
Sbjct: 90  VYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNF 149

Query: 362 TLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLD 421
           T++N G  G     P++N P+ AI+ M  I+  P ++ +G V   P+M + +  DHR++D
Sbjct: 150 TITNGGVFGSLMSTPIINPPQSAILGMHAIKDRP-MAVNGQVEILPMMYLALSYDHRLID 208

Query: 422 GATVAKFCNEWKQLIENPELLLLQM 446
           G     F    K+L+E+P  LLL +
Sbjct: 209 GRESVGFLVTIKELLEDPTRLLLDV 233

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score =  118 bits (298), Expect = 8e-33
 Identities = 32/90 (35%), Positives = 49/90 (54%)

Query: 21  SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL 80
             +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 81  LHAPGNIVKVGETLLKLVVGDSAVPTPSSD 110
            +   +I  VG+ L+ +             
Sbjct: 62  YYNLDDIAYVGKPLVDIETEALKDLEHHHH 91

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213

 Score =  103 bits (258), Expect = 7e-26
 Identities = 28/207 (13%), Positives = 70/207 (33%), Gaps = 25/207 (12%)

Query: 239 PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES 298
             F    +I+   L K            +  + F P +I  ++ A++++  +     ++ 
Sbjct: 26  CGFSLTSKIDITTLKKSL---------DDSAYKFYPVMIYLIAQAVNQFDELRMAIKDD- 75

Query: 299 LEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNE--LNPADN 356
            E+I+  S +    +  Q       +    S  I +       + +  K +         
Sbjct: 76  -ELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVT 134

Query: 357 SGGTITLSNIGAIGGKFGAPLLNLPEVA---IIAMGRIEKVPRLSDDGNVYPSPIMTVNI 413
               + +S +  +        +         II M + ++     +   +    ++ +++
Sbjct: 135 PENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAKYQQ-----EGDRL----LLPLSV 185

Query: 414 GADHRVLDGATVAKFCNEWKQLIENPE 440
              H V DG  VA+F N  ++L  +  
Sbjct: 186 QVHHAVCDGFHVARFINRLQELCNSKL 212

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score =  103 bits (257), Expect = 1e-25
 Identities = 29/206 (14%), Positives = 64/206 (31%), Gaps = 24/206 (11%)

Query: 239 PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES 298
             ++   +++  A +K              KH F P+ I  L+  M+ +P       +  
Sbjct: 31  CTYNQTVQLDITAFLKTV---------KKNKHKFYPAFIHILARLMNAHPEFRMAMKDG- 80

Query: 299 LEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNPADNS 357
            E+++  S +    +  +      ++ +       +     S+      +N    P    
Sbjct: 81  -ELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFI 139

Query: 358 GGTITLSNIGAIGGKFGAPLLNLPEVA---IIAMGRIEKVPRLSDDGNVYPSPIMTVNIG 414
                +S    +        +   +     +  MG+            V    +M + I 
Sbjct: 140 ENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYT-----QGDKV----LMPLAIQ 190

Query: 415 ADHRVLDGATVAKFCNEWKQLIENPE 440
             H V DG  V +  NE +Q  +  +
Sbjct: 191 VHHAVCDGFHVGRMLNELQQYCDEWQ 216

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 97.3 bits (243), Expect = 3e-25
 Identities = 31/75 (41%), Positives = 50/75 (66%)

Query: 23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
          + +  L   GEG+ E E+++W VKEGD +E+ Q L  V +DK T++I S  +GK+ ++L+
Sbjct: 1  MYEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILY 60

Query: 83 APGNIVKVGETLLKL 97
            G +V VG TLL++
Sbjct: 61 REGQVVPVGSTLLQI 75

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217

 Score = 92.5 bits (229), Expect = 8e-22
 Identities = 23/209 (11%), Positives = 58/209 (27%), Gaps = 29/209 (13%)

Query: 239 PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES 298
           P      E+ C    +                +F    + ++  A ++ P      + + 
Sbjct: 28  PQLSITSEVECGGARQRA---------KAAGQSFFLHYLYAVLRAANEIPEFRYRIDPDG 78

Query: 299 LEVILKGSHNIGIAMATQ-----HGLAVPNIKNVQSL--SILEITKELSRLQQLAKDNEL 351
             V+L  + ++   +  +          P   +  +       I   +            
Sbjct: 79  -RVVLYDTIDMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENE 137

Query: 352 NPADNSGGTITLSNIGAIGGKFGAPLLNLPE---VAIIAMGRIEKVPRLSDDGNVYPSPI 408
             AD   G I LS    +                  ++  G+         +G +    +
Sbjct: 138 EVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYPLLNAGKAII-----REGRL----V 188

Query: 409 MTVNIGADHRVLDGATVAKFCNEWKQLIE 437
           M + +   H  +DG  ++ F  + +  ++
Sbjct: 189 MPIAMTIHHGFIDGHHLSLFYKKVEDFLK 217

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70

 Score = 70.6 bits (173), Expect = 9e-16
 Identities = 27/68 (39%), Positives = 35/68 (51%)

Query: 123 SPDSKLNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADG 182
           S  S   +      LATP VR LA    I L +V  +GKDGR+LKED+L Y  ++  A  
Sbjct: 3   SGSSGHQEIKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAIL 62

Query: 183 PSTASVSA 190
           P +   S 
Sbjct: 63  PPSGPSSG 70

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58

 Score = 65.0 bits (159), Expect = 7e-14
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA 180
            LATP VRNLA    I L +V  +GKDGR+LKED+L Y  ++   
Sbjct: 8   TLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTLE 52

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62

 Score = 62.0 bits (151), Expect = 9e-13
 Identities = 22/57 (38%), Positives = 28/57 (49%)

Query: 134 GGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAADGPSTASVSA 190
             V A P  R LAK  GI+L  V  TG  G +  EDV +YA +   A  P+ A  + 
Sbjct: 3   REVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEETAKATAPAPAPKAV 59

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score = 68.0 bits (167), Expect = 3e-12
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 18/173 (10%)

Query: 283 AMSKYPFMNSCFNEESLE-VILKGSH-NIGIA--MATQHG---LAVPNIKNVQSLSILEI 335
           A+ K+P MN  F     +   +  +H N+G+A  +  + G   L V  IK  +++   + 
Sbjct: 54  AVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQF 113

Query: 336 TKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIE--- 392
                 + + A+D +L   D SG TI+L+N G +G     P L   + AII  G +E   
Sbjct: 114 IAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPA 173

Query: 393 -----KVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPE 440
                   R++D G      ++T+    DHR++ GA    F     QL+ + +
Sbjct: 174 EFQGASEERIADLG---IGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDD 223

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40

 Score = 58.8 bits (143), Expect = 8e-12
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 137 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173
           LA P    L +  G++  +V  TG  GR+LKEDV+++
Sbjct: 1   LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRH 37

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49

 Score = 56.8 bits (138), Expect = 4e-11
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA 180
           V+A P+VR  A+  G+++  V  TGK+GRVLKED+  +    G A
Sbjct: 7   VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL--AGGA 49

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus} Length = 41

 Score = 55.9 bits (136), Expect = 6e-11
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 176
           +LA P  R LA+  GI + +V  +G  GRV  EDV  YA +
Sbjct: 1   MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAER 41

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 21/71 (29%), Positives = 37/71 (52%)

Query: 39  ELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98
           E+ +  VK GD++   Q L  V+ DKA++E+ + + G V +L    G+ VK G  ++   
Sbjct: 12  EVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFE 71

Query: 99  VGDSAVPTPSS 109
           V  +A     +
Sbjct: 72  VEGAAPAAAPA 82

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 23/70 (32%), Positives = 38/70 (54%)

Query: 34  GIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGET 93
           G  E E+ +  VK GD++   Q L  V+ DKA++E+ + + G V +L    G+ VK G  
Sbjct: 11  GGDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSL 70

Query: 94  LLKLVVGDSA 103
           ++   V  +A
Sbjct: 71  IMIFEVEGAA 80

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus} Length = 40

 Score = 53.2 bits (129), Expect = 7e-10
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 138 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 174
           A P++R LA+  G++L  +  TG  GR+ +EDV + A
Sbjct: 2   AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51

 Score = 53.5 bits (129), Expect = 8e-10
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 134 GGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173
                +P +R L   + ++   +  TG  GR+ +EDV K+
Sbjct: 8   NNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKH 47

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 14/73 (19%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 38  CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97
            +L ++ V++G  +E       ++  K  + +  + +G+V + +  PG +++ G  + +L
Sbjct: 26  GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEAGCVVARL 84

Query: 98  VVGDSAVPTPSSD 110
            + D +   PS  
Sbjct: 85  ELDDPSKVHPSGP 97

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 45  VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 103
           VK GD IE  Q L  ++S KA++E+ S   G V  +    G+ +K G+ +++L     A
Sbjct: 20  VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAGA 78

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 12/64 (18%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 38  CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97
            +L ++ V++G  +E       ++  K  + +  + +G+V + +  PG +++ G  + +L
Sbjct: 14  GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEAGCVVARL 72

Query: 98  VVGD 101
            + D
Sbjct: 73  ELDD 76

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 19/79 (24%), Positives = 37/79 (46%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
            VD+ +    E +A+  +  W  K GD +   + L  +++DK  +E+ +   G +  +L 
Sbjct: 2   SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLE 61

Query: 83  APGNIVKVGETLLKLVVGD 101
             G  V   + L +L  G+
Sbjct: 62  DEGTTVTSRQILGRLREGN 80

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 45  VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 103
           V  GD I     L  +++DKAT+++ +   G V ++    G+ +  G  ++ +    +A
Sbjct: 23  VNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGTA 81

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 52.2 bits (126), Expect = 4e-09
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83
          +  P     E IA+  +  W  K G+ ++  + +  +++DK  +E+ +   G +A+++  
Sbjct: 4  IKAP--TFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61

Query: 84 PGNIVKVGETL 94
           G+ V  GE L
Sbjct: 62 EGDTVLSGELL 72

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 40  LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLV 98
           + +W  KEGD+I E   +  V++DKAT+   S  +  +A++L A G   V +G  ++ + 
Sbjct: 24  IARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIG-AIICIT 82

Query: 99  VGD----SAVPTPSSDVLESVKPP 118
           VG      A    + D   +  P 
Sbjct: 83  VGKPEDIEAFKNYTLDSSAASGPS 106

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 40  LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLV 98
           + +W  K G+++ E   L  +++DKATI    + +G +A++L   G   V +G T L ++
Sbjct: 44  VQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLG-TPLCII 102

Query: 99  VGD----SAVPTPSSDVLESVKPP 118
           V      SA        +  +KP 
Sbjct: 103 VEKEADISAFADYRPTEVTDLKPQ 126

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 6/75 (8%)

Query: 40  LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLV 98
           ++KW  KEG+ +     LC +++DKA + + +   G +A+++   G+  +++G +L+ L+
Sbjct: 24  IVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLG-SLIGLI 82

Query: 99  VGD----SAVPTPSS 109
           V +      V  PSS
Sbjct: 83  VEEGEDWKHVSGPSS 97

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 42   KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 98
            K     GD +E    +  +++ K  + + +   GKV ++LH  G++V+ G+ +  +V
Sbjct: 1180 KPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVIV 1236

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 74/460 (16%), Positives = 131/460 (28%), Gaps = 139/460 (30%)

Query: 75  GK---VAQLL-------HAPGNI--VKVGETLLKLVVGDSAVPTPSSDVLESVKPP---G 119
           GK      +             I  + +             V      +L  + P     
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKN-----CNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 120 SENSPDSKLNKDTVGGVLATPTVRNL--AKLYGINLY---DVDATGKDGRVLKE-D---- 169
           S++S + KL   ++   L     R L  +K Y   L    +V    ++ +     +    
Sbjct: 217 SDHSSNIKLRIHSIQAEL-----RRLLKSKPYENCLLVLLNV----QNAKAWNAFNLSCK 267

Query: 170 VLKYAVQKGAAD---GPSTASVSADCREQLLGEEETYPQTFAEVKWY---PDD------K 217
           +L     K   D     +T  +S D     L  +E         K+    P D       
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLL--KYLDCRPQDLPREVLT 324

Query: 218 TVPLRGFQRTMVKTMSM-AAKIP----HFHYVEEINCDALVK-LKASFQNNNSDPN-IKH 270
           T P           +S+ A  I      +   + +NCD L   +++S   N  +P   + 
Sbjct: 325 TNPR---------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRK 373

Query: 271 TF-----LP--SLI--KSLSM---AMSKY---PFMNSCFNEESLEVILKGSHN--IGIAM 313
            F      P  + I    LS+    + K      +N      SL  + K      I I  
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSL--VEKQPKESTISI-- 428

Query: 314 ATQHGLAV---PNIKNVQSL--SILE---ITK--ELSRLQQLAKDN--------ELNPAD 355
                + +     ++N  +L  SI++   I K  +   L     D          L   +
Sbjct: 429 ---PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 356 NSGGTITLSNIGAIGGKFGAPLLNLP--EVAIIAMGRIEKVP-RLSD---DGNVYPSPIM 409
           +         +           L+    E  I            + +       Y   I 
Sbjct: 486 HPERMTLFRMV----------FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI- 534

Query: 410 TVNIGADHRVLDGATVAKF---CNEWKQLIENPELLLLQM 446
             N     R+++   +  F     E   LI +    LL++
Sbjct: 535 CDNDPKYERLVN--AILDFLPKIEE--NLICSKYTDLLRI 570

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 40 LLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLV 98
          + +W  K G+++ E   L  +++D ATI    + +G +A++L   G   V +G  L  +V
Sbjct: 22 VQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97
           K  VK GD+IE+ Q +  ++S K  I I +   G V ++    G+ V  G+ LL+L
Sbjct: 11 WKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLEL 67

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 139 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQKGAA 180
           +P  RN+ + + ++     ATG  G   KED LK    K   
Sbjct: 13  SPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTG 54

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Length = 77

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97
           K  VKEGD ++  Q +  +++ K   EI +   GKV ++L    + V+ G+ L+K+
Sbjct: 20 SKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 13  HALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSR 72
           H  A     G +  P+          +++   V  G ++ + QPLC + + K    +TS 
Sbjct: 641 HPKALKDVKGQIGAPMP--------GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSP 692

Query: 73  YKGKVAQLLHAPGNIVKVGETLLKL 97
            +G V ++       ++  + +L++
Sbjct: 693 MEGTVRKVHVTKDMTLEGDDLILEI 717

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Length = 94

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 45 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97
          VK GD + E Q +C +++ K    +T+   G V  +    G+ V  G+ L++L
Sbjct: 41 VKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Length = 74

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97
          L+  V+ GD +   Q L  +++ K   EI S   G V ++L   G  V  G+ L++L
Sbjct: 17 LRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Length = 99

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 15/63 (23%), Positives = 26/63 (41%)

Query: 41  LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 100
            K FVK GD+++    L  + + K    I S   G V ++ +  G        L++    
Sbjct: 26  EKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEE 85

Query: 101 DSA 103
           +S 
Sbjct: 86  ESD 88

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 44  FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 97
            V+ G E++E Q LC +++ K    + +  KG VA++  + GN + V + +++ 
Sbjct: 627 DVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEF 680

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
2ii3_A	262	Lipoamide acyltransferase component of branched-C	100.0
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	100.0
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	100.0
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	100.0
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	100.0
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	100.0
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	100.0
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	100.0
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.96
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.76
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.75
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.74
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.73
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.73
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.7
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.66
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.63
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.63
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.61
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.58
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.43
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.37
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.33
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.3
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.29
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.26
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.25
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.25
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.23
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.22
3rnm_E	58	Lipoamide acyltransferase component of branched-C	99.22
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	99.22
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	99.21
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	99.14
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	99.13
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	99.1
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.1
2coo_A	70	Lipoamide acyltransferase component of branched- c	99.08
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	99.03
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.02
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.0
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.98
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.81
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.75
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.74
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.68
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.27
1hpc_A	131	H protein of the glycine cleavage system; transit	98.27
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.25
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	97.87
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	97.82
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	97.82
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	97.75
3klr_A	125	Glycine cleavage system H protein; antiparallel be	97.72
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.58
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.53
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.51
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.27
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.01
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	96.67
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	96.41
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	96.28
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	96.11
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	96.11
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	95.99
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	95.91
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	95.83
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	95.81
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	95.5
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	95.49
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	95.3
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	94.47
2qj8_A	332	MLR6093 protein; structural genomics, joint center	94.24
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	94.15
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	94.08
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	93.91
2xha_A	193	NUSG, transcription antitermination protein NUSG;	93.87
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	93.26
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	92.91
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	92.79
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	92.52
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	92.15
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	91.9
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	91.81
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	91.71
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	91.12
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	91.08
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	90.99
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	90.56
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	90.23
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	90.16
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	89.73
2xha_A	193	NUSG, transcription antitermination protein NUSG;	89.21
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	87.74
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	87.53
3our_B	183	EIIA, phosphotransferase system IIA component; exh	87.26
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	87.17
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	87.07
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	86.94
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	86.83
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	81.65
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	81.58
4hvm_A	493	Tlmii; PSI-biology, midwest center for structural	81.03

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=2.2e-93  Score=736.10  Aligned_cols=411  Identities=35%  Similarity=0.590  Sum_probs=39.5

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCCC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA  103 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~~  103 (447)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|+.|+.+++.
T Consensus         3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~   82 (428)
T 3dva_I            3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGYE   82 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999865443


Q ss_pred             CCCCC--C--CCC--CCC-CCCCCC----CCCC--CCC-CcCcCCCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHH
Q 013218          104 VPTPS--S--DVL--ESV-KPPGSE----NSPD--SKL-NKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKED  169 (447)
Q Consensus       104 ~~~~~--~--~~~--~~~-~~~~~~----~~~~--~~~-~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D  169 (447)
                      .....  .  .++  +.+ ..+...    .++.  ... ......++++||+|||||+|+||||+.|+||||+|||+++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k~D  162 (428)
T 3dva_I           83 NMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKED  162 (428)
T ss_dssp             ---------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCTTT
T ss_pred             ccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeHHH
Confidence            21110  0  000  000 000000    0000  000 01112357899999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCccccccchhcccCCcCCCCcccccccCCCCCceecCchHHHHHHHHHHHhc-CcceEEEEeeee
Q 013218          170 VLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEIN  248 (447)
Q Consensus       170 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vD  248 (447)
                      |++|+...... .+..... .  ....+    ..+.   ........+++|++++||.||++|.+|+ ++||||++.+||
T Consensus       163 V~~~~~~~~~~-~~~~~~~-~--~~~~~----~~~~---~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evD  231 (428)
T 3dva_I          163 IDAFLAGGAKP-APAAAEE-K--AAPAA----AKPA---TTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEAD  231 (428)
T ss_dssp             TTTTSCC-------------------------------------------------------------------------
T ss_pred             HHHHhhccccc-ccccccc-c--cccCC----CCcc---ccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEe
Confidence            99997432111 0100000 0  00000    0000   0001123578999999999999999995 899999999999


Q ss_pred             chHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccC
Q 013218          249 CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQ  328 (447)
Q Consensus       249 vt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~  328 (447)
                      ||+|+++|+++|+..+..|.++||++||+||+++||++||+||++|++++++|++|+++|||+||++++||++|+|++++
T Consensus       232 vt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~  311 (428)
T 3dva_I          232 VTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHAD  311 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCC
Confidence            99999999999876666788999999999999999999999999998754589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCceeEEEecceEEeeEEcCCCceeeEcE
Q 013218          329 SLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPI  408 (447)
Q Consensus       329 ~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~  408 (447)
                      +++|.+|+++++++++++|+|+|.++|+++|||||||+||+|+.+|+||||+||+|||++|++.++|++ .||++++|++
T Consensus       312 ~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~-~~g~i~~r~~  390 (428)
T 3dva_I          312 RKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIV-RDGEIVAAPM  390 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEE-ECCEEEEeee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 5889999999


Q ss_pred             EEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218          409 MTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM  446 (447)
Q Consensus       409 m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~  446 (447)
                      |+|||+||||+|||+|+++||+.|+++||||..||+++
T Consensus       391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P~~lll~~  428 (428)
T 3dva_I          391 LALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLMEA  428 (428)
T ss_dssp             --------------------------------------
T ss_pred             EEEEEEecccccchHHHHHHHHHHHHHHhCHHHHhhcC
Confidence            99999999999999999999999999999999999875

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=100.00  E-value=9.6e-62  Score=469.83  Aligned_cols=233  Identities=47%  Similarity=0.811  Sum_probs=221.6

Q ss_pred             CCceecCchHHHHHHHHHHHhcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEE
Q 013218          215 DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF  294 (447)
Q Consensus       215 ~~~~~~~s~~rk~ia~~m~~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~  294 (447)
                      ..+++|++++||.||++|.+|+++||||++.++|+|+|+++|+++|+.....|.++||++|++||+++||++||+||++|
T Consensus        30 ~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~  109 (262)
T 2ii3_A           30 KDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASV  109 (262)
T ss_dssp             CCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEEE
T ss_pred             CcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEEE
Confidence            46789999999999999999989999999999999999999999875333457899999999999999999999999999


Q ss_pred             ccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCccc
Q 013218          295 NEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFG  374 (447)
Q Consensus       295 ~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~  374 (447)
                      +++++++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|+++|||||||+||+|+.+|
T Consensus       110 ~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~~  189 (262)
T 2ii3_A          110 DENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYA  189 (262)
T ss_dssp             CTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSCE
T ss_pred             eCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccce
Confidence            87645899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhcCC
Q 013218          375 APLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQMR  447 (447)
Q Consensus       375 ~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~~  447 (447)
                      +|||||||+|||++|++.++|++++||+++++++|+|||+||||++||+++++||+.|+++||+|..||++++
T Consensus       190 tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll~~~~  262 (262)
T 2ii3_A          190 KPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK  262 (262)
T ss_dssp             ECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHHHCC
T ss_pred             ECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHHhhcC
Confidence            9999999999999999999999966789999999999999999999999999999999999999999998864

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=100.00  E-value=5.1e-60  Score=454.13  Aligned_cols=222  Identities=32%  Similarity=0.546  Sum_probs=213.1

Q ss_pred             cCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccC-
Q 013218          220 PLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEE-  297 (447)
Q Consensus       220 ~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~-  297 (447)
                      |++++||.||++|.+|+ ++||||++.+||+|+|+++|+++|+    .|.++||++|++||+++||++||+||++|+++ 
T Consensus        18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~----~~~kls~~~~iikAva~AL~~~P~~Na~~~~~~   93 (250)
T 3l60_A           18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS----AAPEITPFALTLRLLVIALKHNVILNSTWVDSG   93 (250)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT----TCTTCCHHHHHHHHHHHHHHHCGGGSEEEECTT
T ss_pred             CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHhCHHhhEEEeccC
Confidence            99999999999999996 8999999999999999999999864    46799999999999999999999999999865 


Q ss_pred             -CcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCccccc
Q 013218          298 -SLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAP  376 (447)
Q Consensus       298 -~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~p  376 (447)
                       ++++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|++||||||||+|++|+.+|+|
T Consensus        94 ~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftp  173 (250)
T 3l60_A           94 EGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVP  173 (250)
T ss_dssp             TSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCC
T ss_pred             CCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEe
Confidence             3589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218          377 LLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM  446 (447)
Q Consensus       377 ii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~  446 (447)
                      ||||||+|||++|++.++|++. ||++++|++|+|||+||||++||+++++||+.|+++||+|+.|+.++
T Consensus       174 Iinppq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~~~~  242 (250)
T 3l60_A          174 VINHPEAAILGLGAIKPRPVVV-GGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL  242 (250)
T ss_dssp             CCCTTCSEEEEECCCEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHTTTC
T ss_pred             eeCCCCceEEEecceEEEeEEE-CCEEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHhCcc
Confidence            9999999999999999999995 78999999999999999999999999999999999999999988764

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=100.00  E-value=3.1e-60  Score=455.25  Aligned_cols=229  Identities=26%  Similarity=0.445  Sum_probs=216.8

Q ss_pred             CCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218          215 DDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC  293 (447)
Q Consensus       215 ~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~  293 (447)
                      ..+++|++++||.|+++|.+|+ ++||||++.++|+|+|+++|+++|+.....|.++||+++++||+++||++||+||++
T Consensus        14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   93 (243)
T 1dpb_A           14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSS   93 (243)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred             CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence            3467899999999999999995 899999999999999999999987643345789999999999999999999999999


Q ss_pred             EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218          294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF  373 (447)
Q Consensus       294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~  373 (447)
                      |+++++++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|++||||||||+||+|+.+
T Consensus        94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~  173 (243)
T 1dpb_A           94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTA  173 (243)
T ss_dssp             ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSC
T ss_pred             EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccc
Confidence            98654589999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       374 ~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      |+|+|||||+|||++|++.++|++. ||+++++++|+|||+||||++||+++++||+.|+++||+|+.||+
T Consensus       174 ~tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~  243 (243)
T 1dpb_A          174 FTPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL  243 (243)
T ss_dssp             CCCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             eECccCCCCCeEEEccccEEEEEEE-CCeEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence            9999999999999999999999995 789999999999999999999999999999999999999998875

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=100.00  E-value=1.6e-60  Score=454.56  Aligned_cols=228  Identities=26%  Similarity=0.518  Sum_probs=215.7

Q ss_pred             CceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218          216 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC  293 (447)
Q Consensus       216 ~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~  293 (447)
                      .+++|++++||.||++|.+|+ ++||||++.++|+|+|+++|+++|+.+. ..|.++||+++++||+++||++||+||++
T Consensus         4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   83 (233)
T 1scz_A            4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence            356799999999999999995 6999999999999999999999875322 34679999999999999999999999999


Q ss_pred             EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218          294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF  373 (447)
Q Consensus       294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~  373 (447)
                      |+++  ++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|++||||||||+||+|+.+
T Consensus        84 ~~~~--~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~  161 (233)
T 1scz_A           84 IDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM  161 (233)
T ss_dssp             EETT--EEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred             EeCC--EEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccc
Confidence            9865  89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218          374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM  446 (447)
Q Consensus       374 ~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~  446 (447)
                      |+|||||||+|||++|++.++|++. ||+++++++|+|||+||||++||+++++||+.|+++||+|..||+++
T Consensus       162 ~tpIin~pq~aIl~vG~~~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~~~  233 (233)
T 1scz_A          162 STPIINPPQSAILGMHAIKDRPMAV-NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV  233 (233)
T ss_dssp             CCCCCCTTCSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred             eEcccCCCCcEEEEccccEEEEEEE-CCEEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHhhcC
Confidence            9999999999999999999999995 78999999999999999999999999999999999999999998864

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=100.00  E-value=6e-60  Score=455.14  Aligned_cols=228  Identities=29%  Similarity=0.482  Sum_probs=215.5

Q ss_pred             CCCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccc
Q 013218          214 PDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMN  291 (447)
Q Consensus       214 ~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln  291 (447)
                      ...+++|++++||.||++|.+|+ ++||||++.+||+|+|+++|+++|+.++ ..|.++||++|++||+++||++||+||
T Consensus        16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N   95 (256)
T 3mae_A           16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN   95 (256)
T ss_dssp             CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred             CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence            35688999999999999999996 8999999999999999999999875432 236799999999999999999999999


Q ss_pred             eEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCC
Q 013218          292 SCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGG  371 (447)
Q Consensus       292 ~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~  371 (447)
                      ++|+++  ++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|++||||||||+||+|+
T Consensus        96 a~~~~~--~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~  173 (256)
T 3mae_A           96 STWAGD--KIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS  173 (256)
T ss_dssp             EEEETT--EEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTC
T ss_pred             hEEecC--EEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCc
Confidence            999865  899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          372 KFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       372 ~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      .+|+|+|||||+|||++|++.++|++. +|+++++++|+|||+||||++||+++++||+.|+++||+|+.|..
T Consensus       174 ~~ftpIInppq~aIL~vG~i~~~pv~~-~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~~  245 (256)
T 3mae_A          174 VQSMGIINHPQAAILQVESIVKRPVII-DDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKENT  245 (256)
T ss_dssp             SEEECCCCTTSSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTTC
T ss_pred             cceEcccCCCCceEEEecccEEEEEEE-CCEEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHHH
Confidence            999999999999999999999999995 689999999999999999999999999999999999999987643

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=100.00  E-value=8.3e-59  Score=440.22  Aligned_cols=218  Identities=32%  Similarity=0.559  Sum_probs=207.1

Q ss_pred             CCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218          215 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC  293 (447)
Q Consensus       215 ~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~  293 (447)
                      ..+++|++++||.||++|.+| +++||||++.++|+|+|+++|+++|+.    |.++||+++++||+++||++||+||++
T Consensus         5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~----g~kls~~~~~ikA~~~Al~~~P~~N~~   80 (224)
T 3rqc_A            5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR----NRKVTVTGFLARIVPSILKQYPYLNAI   80 (224)
T ss_dssp             -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT----TCCCCHHHHHHHHHHHHHHHSGGGSBB
T ss_pred             CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHHhCHHhheE
Confidence            457789999999999999998 589999999999999999999998752    779999999999999999999999999


Q ss_pred             EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218          294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF  373 (447)
Q Consensus       294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~  373 (447)
                      |+++++++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|++||||||||+||+|+.+
T Consensus        81 ~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~  160 (224)
T 3rqc_A           81 YDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIM  160 (224)
T ss_dssp             CCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSE
T ss_pred             EeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccc
Confidence            98765689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhc
Q 013218          374 GAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQ  445 (447)
Q Consensus       374 ~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~  445 (447)
                      |+|+|||||+|||++|++.++|+         |++|+|||+||||++||+++++||+.|+++||+|+.||++
T Consensus       161 ~tpiin~pq~aIl~vG~~~~~p~---------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~~  223 (224)
T 3rqc_A          161 STPIINYPEVAILGVHRILEREG---------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYE  223 (224)
T ss_dssp             EECCCCTTBSEEEEECCCEEETT---------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC-
T ss_pred             eEeccCCCCceEEEecccEEECC---------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhhc
Confidence            99999999999999999998754         7899999999999999999999999999999999999986

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=100.00  E-value=3.9e-59  Score=447.04  Aligned_cols=227  Identities=24%  Similarity=0.410  Sum_probs=214.3

Q ss_pred             CCceecCchHHHHHHHHHHHh-cCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceE
Q 013218          215 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC  293 (447)
Q Consensus       215 ~~~~~~~s~~rk~ia~~m~~s-~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~  293 (447)
                      ..+++|++++||.||++|.+| +++||||++.++|+|+|+++|+++|+..... .++||+++++||+++||++||+||++
T Consensus        11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~-~kls~~~~~ikAv~~Al~~~P~~Na~   89 (239)
T 3b8k_A           11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGR-SKISVNDFIIKASALACLKVPEANSS   89 (239)
T ss_dssp             SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTS-SCCCHHHHHHHHHHHHHHHCCCSCTT
T ss_pred             CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhcc-CCCCHHHHHHHHHHHHHHhChHhhEE
Confidence            356789999999999999999 5899999999999999999999987643332 59999999999999999999999999


Q ss_pred             EccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcc
Q 013218          294 FNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKF  373 (447)
Q Consensus       294 ~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~  373 (447)
                      |+++  ++++|+++|||+||++++||++|+|++++++++.+|+++++++++++|+|+|.++|+++|||||||+||+|+++
T Consensus        90 ~~~~--~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~  167 (239)
T 3b8k_A           90 WMDT--VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKN  167 (239)
T ss_dssp             SCCC--SSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSS
T ss_pred             EECC--EEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCcee
Confidence            9864  78999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeEEEecceEEeeEEc-CCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          374 GAPLLNLPEVAIIAMGRIEKVPRLS-DDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       374 ~~pii~~pq~ail~vG~i~~~p~~~-~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      |+|++||||+|||++|++.++|+++ +||+++++++|+|||+||||++||+++++||+.|+++||+|+.||+
T Consensus       168 ftpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~  239 (239)
T 3b8k_A          168 FSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL  239 (239)
T ss_dssp             CCCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred             EECcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence            9999999999999999999999995 5788999999999999999999999999999999999999998875

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=4.9e-46  Score=419.91  Aligned_cols=212  Identities=25%  Similarity=0.362  Sum_probs=176.1

Q ss_pred             HHHHhcCcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccceEEccCC--cEEEEcccc
Q 013218          231 TMSMAAKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES--LEVILKGSH  307 (447)
Q Consensus       231 ~m~~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~--~~i~~~~~v  307 (447)
                      +|.+|+++||||++.+||||+|+++|+++|+.+. ..|.++||++||+||+++||++||+||++|++++  .+++++++|
T Consensus         1 ~m~~S~~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~v   80 (1113)
T 2xt6_A            1 GMNASLEVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHT   80 (1113)
T ss_dssp             ------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSSC
T ss_pred             ChhhhccCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCcc
Confidence            5778889999999999999999999999986432 4578999999999999999999999999998653  279999999


Q ss_pred             eEEeEEEcC--CC---eEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCcccccccCCCc
Q 013218          308 NIGIAMATQ--HG---LAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPE  382 (447)
Q Consensus       308 ~igiav~~~--~G---l~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~~pii~~pq  382 (447)
                      ||||||+++  +|   |++|||++++++++.+|++++++++++||+|+|.++|+++|||||||+|++|+.+|+|||||||
T Consensus        81 nigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq  160 (1113)
T 2xt6_A           81 NLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQ  160 (1113)
T ss_dssp             CEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTTC
T ss_pred             cEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCC
Confidence            999999997  66   9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEecceEEeeEEcCC-----CceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHh
Q 013218          383 VAIIAMGRIEKVPRLSDD-----GNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELL  442 (447)
Q Consensus       383 ~ail~vG~i~~~p~~~~d-----G~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~l  442 (447)
                      +|||++|++.++|++.++     |+++++++|+|||+||||||||+++++||+.|+++||+|+.|
T Consensus       161 ~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~~w  225 (1113)
T 2xt6_A          161 GAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDDFF  225 (1113)
T ss_dssp             SEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcHHH
Confidence            999999999999988531     679999999999999999999999999999999999999865

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=100.00  E-value=3.9e-43  Score=331.55  Aligned_cols=184  Identities=16%  Similarity=0.128  Sum_probs=164.9

Q ss_pred             HhcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEE
Q 013218          234 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM  313 (447)
Q Consensus       234 ~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav  313 (447)
                      ++.++||||++.++|||+|+++|++.         ++|++++++||+++||++||+||++|+++  ++++|+++|||+||
T Consensus        26 ~~~~~P~~t~~~evDvt~l~~~rk~~---------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~v~igiAV   94 (219)
T 1q23_A           26 QSVAQCTYNQTVQLDITAFLKTVKKN---------KHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWDSVHPCYTV   94 (219)
T ss_dssp             TTTTCEEEEEEEEEECHHHHHHHHHT---------TCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESCCEEEEEE
T ss_pred             cCCCCcEEEEEEEEEhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhChHhhEEEECC--EEEEecccCeEEEE
Confidence            45689999999999999999999863         89999999999999999999999999854  89999999999999


Q ss_pred             -EcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcC-CCCC-CCCCCCeEEEEecCCCCCcccccccCCC-c--eeEEE
Q 013218          314 -ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNP-ADNSGGTITLSNIGAIGGKFGAPLLNLP-E--VAIIA  387 (447)
Q Consensus       314 -~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g-~l~~-~~~~~gtftISnlg~~G~~~~~pii~~p-q--~ail~  387 (447)
                       ++++||++|++.. +.+++.+|++++++++++||+| +|.+ +|+ ||||||||+||++.+.+.+..++| +  ++|++
T Consensus        95 ~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~~~~~~pIi~  172 (219)
T 1q23_A           95 FHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANMDNFFAPVFT  172 (219)
T ss_dssp             EETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCCTTCCSCEEE
T ss_pred             EecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCCccceeEEEe
Confidence             9999999999986 6789999999999999999998 6975 888 999999999998655444444433 2  59999


Q ss_pred             ecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCH
Q 013218          388 MGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENP  439 (447)
Q Consensus       388 vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P  439 (447)
                      +|++.++     +|    +.+|||||+||||++||+++|+||+.|+++||+|
T Consensus       173 ~G~~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~  215 (219)
T 1q23_A          173 MGKYYTQ-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW  215 (219)
T ss_dssp             ECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             cccEEEE-----CC----cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCc
Confidence            9999875     55    7899999999999999999999999999999985

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=100.00  E-value=1.3e-42  Score=326.71  Aligned_cols=184  Identities=16%  Similarity=0.162  Sum_probs=165.9

Q ss_pred             HhcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEE
Q 013218          234 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM  313 (447)
Q Consensus       234 ~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav  313 (447)
                      .+.++|||+++.++|||+|+++|++.         ++|++++++||+++||++||+||++|+++  ++++|+++|||+||
T Consensus        21 ~~~~~P~~~~~~evDvt~l~~~rk~~---------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~v~igiAV   89 (213)
T 3cla_A           21 RHRLPCGFSLTSKIDITTLKKSLDDS---------AYKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVWDSVDPQFTV   89 (213)
T ss_dssp             HHTSCCEEEEEEEEECHHHHHHHHTS---------SCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESCCEEEEEE
T ss_pred             hCCCCceEEEEEEEEHHHHHHHHHHh---------CCCHHHHHHHHHHHHHhhCHHhhEEEECC--EEEEEeccceeEEE
Confidence            34589999999999999999999752         89999999999999999999999999854  89999999999999


Q ss_pred             -EcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcC-CCCC-CCCCCCeEEEEecCCCCCcccccccCCC---ceeEEE
Q 013218          314 -ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNP-ADNSGGTITLSNIGAIGGKFGAPLLNLP---EVAIIA  387 (447)
Q Consensus       314 -~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g-~l~~-~~~~~gtftISnlg~~G~~~~~pii~~p---q~ail~  387 (447)
                       ++++||++|++.. +.+++.+|++++++++++||+| +|.+ +|++||||||||+||++.+.|..-.+.+   ..+|++
T Consensus        90 f~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi~  168 (213)
T 3cla_A           90 FHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIIT  168 (213)
T ss_dssp             EETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCSCEEE
T ss_pred             EeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccccEEE
Confidence             9999999999886 6789999999999999999995 9988 7899999999999998776664433333   258999


Q ss_pred             ecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 013218          388 MGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIEN  438 (447)
Q Consensus       388 vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~  438 (447)
                      +|++.++     +|    +.+|||||+||||++||+++|+||+.|+++||+
T Consensus       169 ~G~~~~~-----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~  210 (213)
T 3cla_A          169 MAKYQQE-----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS  210 (213)
T ss_dssp             EECCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred             eeEEEEE-----CC----eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence            9999875     56    789999999999999999999999999999998

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.4e-41  Score=316.19  Aligned_cols=182  Identities=13%  Similarity=0.161  Sum_probs=163.6

Q ss_pred             hcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEcccceEEeEE-
Q 013218          235 AAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAM-  313 (447)
Q Consensus       235 s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~~~v~igiav-  313 (447)
                      +.++|||+++.++|||+|+++|++.         ++|++++++||+++||+++|+||++|+++ +++++|+++|||+|| 
T Consensus        24 ~~~~P~~~~~~evDvt~l~~~rk~~---------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~-~~i~~~~~i~igvAVf   93 (217)
T 2i9d_A           24 HFQNPQLSITSEVECGGARQRAKAA---------GQSFFLHYLYAVLRAANEIPEFRYRIDPD-GRVVLYDTIDMLSPIK   93 (217)
T ss_dssp             TCSBCEEEEEEEEECHHHHHHHHHT---------TCCHHHHHHHHHHHHHHHSGGGGEEECTT-SCEEEESCCEEEEEEE
T ss_pred             CCCCceEEEEEEEEhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhCHHhheEEcCC-CEEEEecccCeEEEEE
Confidence            4579999999999999999999873         89999999999999999999999999832 379999999999999 


Q ss_pred             EcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhc-CCCCCC------CCCCCeEEEEecCCCCCcccccccCCC---ce
Q 013218          314 ATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKD-NELNPA------DNSGGTITLSNIGAIGGKFGAPLLNLP---EV  383 (447)
Q Consensus       314 ~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~-g~l~~~------~~~~gtftISnlg~~G~~~~~pii~~p---q~  383 (447)
                      ++++||++|++. ++.+++.+|++++++++++||+ |+|.++      |++||||||||+||++.+.++...+++   ..
T Consensus        94 ~t~~GL~~pv~~-~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~~~  172 (217)
T 2i9d_A           94 IKENGKFFTTRF-PYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNY  172 (217)
T ss_dssp             CSTTSCEEEEEE-CCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCCSS
T ss_pred             ecCCceEeEEEe-cCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccceE
Confidence            999999999986 5678999999999999999998 599885      999999999999999877665444434   35


Q ss_pred             eEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHh
Q 013218          384 AIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLI  436 (447)
Q Consensus       384 ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~L  436 (447)
                      +|+++|++.++     +|    +.+|||||+||||++||+++|+||++|+++|
T Consensus       173 PIi~~Gk~~~~-----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l  216 (217)
T 2i9d_A          173 PLLNAGKAIIR-----EG----RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL  216 (217)
T ss_dssp             CEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEecceEEEE-----CC----cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence            89999999875     55    7899999999999999999999999999987

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=4.6e-18  Score=140.11  Aligned_cols=84  Identities=20%  Similarity=0.434  Sum_probs=78.7

Q ss_pred             CCCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCee-ecccEEEEE
Q 013218           19 PASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIV-KVGETLLKL   97 (447)
Q Consensus        19 ~~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v-~~G~~l~~i   97 (447)
                      +....++++||++|++|.+|+|.+|++++||.|++||+|++||+||+.++|+||++|+|.++++++|+.| ..|++|+.|
T Consensus         3 ~~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i   82 (98)
T 2dnc_A            3 SGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLI   82 (98)
T ss_dssp             CCCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEE
T ss_pred             CCcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEE
Confidence            3446678999999999999999999999999999999999999999999999999999999999999998 999999999


Q ss_pred             ecCCC
Q 013218           98 VVGDS  102 (447)
Q Consensus        98 ~~~~~  102 (447)
                      ...++
T Consensus        83 ~~~~~   87 (98)
T 2dnc_A           83 VEEGE   87 (98)
T ss_dssp             ECTTS
T ss_pred             ecCCC
Confidence            86543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.75  E-value=8.1e-18  Score=135.58  Aligned_cols=79  Identities=24%  Similarity=0.355  Sum_probs=75.9

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC-eeecccEEEEEecCC
Q 013218           23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGD  101 (447)
Q Consensus        23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~-~v~~G~~l~~i~~~~  101 (447)
                      .++++||++|+++.+|+|.+|++++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|..|++|+.|...+
T Consensus         5 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~   84 (87)
T 3crk_C            5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE   84 (87)
T ss_dssp             EEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred             ceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence            5789999999999999999999999999999999999999999999999999999999999999 899999999998643

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.74  E-value=1e-17  Score=136.77  Aligned_cols=80  Identities=40%  Similarity=0.746  Sum_probs=76.5

Q ss_pred             ceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           22 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      .+++|+||++|+++.+|+|.+|+|++||.|++||+|++||+||+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus         3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~   82 (93)
T 1k8m_A            3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA   82 (93)
T ss_dssp             CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred             cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999998643

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.73  E-value=1.3e-17  Score=143.43  Aligned_cols=81  Identities=25%  Similarity=0.357  Sum_probs=77.1

Q ss_pred             CceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC-eeecccEEEEEec
Q 013218           21 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVV   99 (447)
Q Consensus        21 ~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~-~v~~G~~l~~i~~   99 (447)
                      ...++|+||++|++|.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|+.|..
T Consensus        25 p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~  104 (128)
T 1y8o_B           25 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE  104 (128)
T ss_dssp             CSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred             CcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEec
Confidence            346889999999999999999999999999999999999999999999999999999999999998 8999999999986


Q ss_pred             CC
Q 013218          100 GD  101 (447)
Q Consensus       100 ~~  101 (447)
                      .+
T Consensus       105 ~~  106 (128)
T 1y8o_B          105 KE  106 (128)
T ss_dssp             SG
T ss_pred             Cc
Confidence            54

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.73  E-value=1.7e-17  Score=139.05  Aligned_cols=79  Identities=29%  Similarity=0.368  Sum_probs=75.9

Q ss_pred             ceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC-eeecccEEEEEecC
Q 013218           22 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVG  100 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~-~v~~G~~l~~i~~~  100 (447)
                      ..++|+||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|..|++|+.|...
T Consensus         6 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~   85 (108)
T 2dne_A            6 SGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGK   85 (108)
T ss_dssp             CCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred             cceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence            35789999999999999999999999999999999999999999999999999999999999999 89999999999864

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.70  E-value=5.3e-17  Score=128.25  Aligned_cols=76  Identities=25%  Similarity=0.460  Sum_probs=73.9

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      ++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999874

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.66  E-value=2.2e-16  Score=123.98  Aligned_cols=75  Identities=41%  Similarity=0.695  Sum_probs=73.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|.
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999885

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.63  E-value=1.7e-17  Score=131.52  Aligned_cols=76  Identities=24%  Similarity=0.420  Sum_probs=73.3

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      ++++||++|+++.+|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.+..
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999998864

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.63  E-value=8.4e-16  Score=121.53  Aligned_cols=75  Identities=31%  Similarity=0.475  Sum_probs=72.4

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ++++||++|++  +|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...
T Consensus         3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   77 (80)
T 1qjo_A            3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence            57999999997  9999999999999999999999999999999999999999999999999999999999999864

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.61  E-value=3.4e-15  Score=117.81  Aligned_cols=75  Identities=28%  Similarity=0.390  Sum_probs=71.1

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ++++||++|++  + +|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~   76 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence            47899999996  7 999999999999999999999999999999999999999999999999999999999998643

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.58  E-value=1e-15  Score=121.32  Aligned_cols=77  Identities=21%  Similarity=0.379  Sum_probs=73.3

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      +++++||++| ++..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.+..|++|+.+...
T Consensus         2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~   78 (81)
T 1gjx_A            2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence            4679999999 6899999999999999999999999999999999999999999999999999999999999998753

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.43  E-value=1.4e-14  Score=115.91  Aligned_cols=72  Identities=29%  Similarity=0.451  Sum_probs=67.8

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ++|++|++      |+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus         3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   74 (85)
T ss_dssp             SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred             cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            35788888      8999999999999999999999999999999999999999999999999999999999998654

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.37  E-value=2.2e-12  Score=99.45  Aligned_cols=65  Identities=32%  Similarity=0.417  Sum_probs=62.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..|+|.+|++++||.|++||+|++||++|...+|+||.+|+|.++++++|+.|..|++|+.|...
T Consensus         6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~   70 (72)
T 1z6h_A            6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS   70 (72)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred             ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence            47999999999999999999999999999999999999999999999999999999999998753

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.33  E-value=1.5e-12  Score=103.82  Aligned_cols=64  Identities=17%  Similarity=0.379  Sum_probs=61.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.+++ ++|+.|..|++|+.|...
T Consensus        12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~   75 (84)
T 2kcc_A           12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELD   75 (84)
T ss_dssp             SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECS
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCC
Confidence            5689999999999999999999999999999999999999999999 999999999999999754

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=7.2e-12  Score=103.27  Aligned_cols=64  Identities=17%  Similarity=0.402  Sum_probs=61.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|. +++++|+.|..|++|+.|...
T Consensus        24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~   87 (100)
T 2dn8_A           24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELD   87 (100)
T ss_dssp             SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCS
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcC
Confidence            4699999999999999999999999999999999999999999 999999999999999999754

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.29  E-value=8.8e-13  Score=107.53  Aligned_cols=76  Identities=21%  Similarity=0.312  Sum_probs=29.1

Q ss_pred             eEEEecCCCCCCC----ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           23 IVDVPLAQTGEGI----AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        23 ~~~~~~p~~~~~~----~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..++.+|...+..    ..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++.+++|+.|..|++|+.|+
T Consensus        15 ~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie   94 (94)
T 2jku_A           15 TENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE   94 (94)
T ss_dssp             ---------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred             CEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence            3468899988765    589999999999999999999999999999999999999999999999999999999998763

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.26  E-value=2.3e-11  Score=94.06  Aligned_cols=63  Identities=29%  Similarity=0.381  Sum_probs=60.5

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..|+|.+|++++||.|++||+|++++++|....|+||.+|+|.++.+++|+.+..|++|+.|+
T Consensus        12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A           12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            469999999999999999999999999999999999999999999999999999999999873

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}

Probab=99.25  E-value=3.6e-12  Score=87.53  Aligned_cols=39  Identities=46%  Similarity=0.662  Sum_probs=37.1

Q ss_pred             ccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHH
Q 013218          136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA  174 (447)
Q Consensus       136 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~  174 (447)
                      +.+||++|++|+++||||+.|.|||++|||+++||++|+
T Consensus         1 ~~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   39 (41)
T 2eq9_C            1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYA   39 (41)
T ss_dssp             CCBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHH
T ss_pred             CCCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHh
Confidence            357999999999999999999999999999999999987

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.25  E-value=2.1e-11  Score=100.29  Aligned_cols=67  Identities=22%  Similarity=0.260  Sum_probs=63.6

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  102 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~  102 (447)
                      ..|+|.+|++++||.|++||+|++|+++|+..+|+||++|+|.++++++|+.|..|++|+.|...+.
T Consensus        21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~   87 (99)
T 2ejm_A           21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES   87 (99)
T ss_dssp             SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence            4799999999999999999999999999999999999999999999999999999999999986544

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.23  E-value=2.3e-11  Score=94.91  Aligned_cols=63  Identities=29%  Similarity=0.372  Sum_probs=60.5

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..|+|.+|++++||.|++||+|++++++|...+|+||++|+|.++.+++|+.|..|++|+.|+
T Consensus        15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A           15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence            468999999999999999999999999999999999999999999999999999999999874

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.22  E-value=2.1e-11  Score=96.03  Aligned_cols=62  Identities=23%  Similarity=0.364  Sum_probs=58.2

Q ss_pred             eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           37 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        37 ~g~i~~-------w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      .|+|.+       |++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus        12 ~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           12 VGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            477776       59999999999999999999999999999999999999999999999999999874

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A

Probab=99.22  E-value=5.1e-12  Score=92.95  Aligned_cols=43  Identities=53%  Similarity=0.765  Sum_probs=39.3

Q ss_pred             CCccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218          134 GGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ  176 (447)
Q Consensus       134 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~  176 (447)
                      .++.+||+||+||+++||||+.|+|||++|||+++||++|++.
T Consensus         6 ~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~   48 (58)
T 3rnm_E            6 RKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   48 (58)
T ss_dssp             --CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence            3578999999999999999999999999999999999999864

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}

Probab=99.22  E-value=7.1e-12  Score=85.57  Aligned_cols=37  Identities=41%  Similarity=0.681  Sum_probs=35.9

Q ss_pred             CCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHH
Q 013218          138 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA  174 (447)
Q Consensus       138 asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~  174 (447)
                      +||++|++|+++|||++.|.|||++|||+++||++|+
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq8_C            2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA   38 (40)
T ss_dssp             CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred             CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence            6999999999999999999999999999999999986

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}

Probab=99.21  E-value=4.5e-12  Score=86.59  Aligned_cols=38  Identities=39%  Similarity=0.621  Sum_probs=35.4

Q ss_pred             cCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHH
Q 013218          137 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA  174 (447)
Q Consensus       137 ~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~  174 (447)
                      ++||++|++|+++|||++.|.|||++|||+++||++|+
T Consensus         1 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq7_C            1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL   38 (40)
T ss_dssp             CCCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred             CCCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence            36999999999999999999999999999999999876

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*

Probab=99.14  E-value=2.7e-11  Score=86.45  Aligned_cols=41  Identities=44%  Similarity=0.702  Sum_probs=38.6

Q ss_pred             CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHH
Q 013218          135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV  175 (447)
Q Consensus       135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~  175 (447)
                      .+.+||++|++|+++||||+.|.|||++|||+++||++|+.
T Consensus         6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~   46 (49)
T 1w85_I            6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   46 (49)
T ss_dssp             CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence            46789999999999999999999999999999999999973

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A

Probab=99.13  E-value=4.3e-11  Score=89.56  Aligned_cols=42  Identities=45%  Similarity=0.632  Sum_probs=39.4

Q ss_pred             ccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHhc
Q 013218          136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK  177 (447)
Q Consensus       136 ~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~  177 (447)
                      +.+||++|+||+++||||+.|.|||++|||+++||++|+...
T Consensus         5 ~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~~   46 (62)
T 1w4i_A            5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEET   46 (62)
T ss_dssp             SEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhcc
Confidence            578999999999999999999999999999999999998653

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A

Probab=99.10  E-value=2.4e-11  Score=87.43  Aligned_cols=40  Identities=28%  Similarity=0.394  Sum_probs=37.8

Q ss_pred             CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHH
Q 013218          135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA  174 (447)
Q Consensus       135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~  174 (447)
                      ...+||.+|+||+++||||+.|.|||++|||+++||++|+
T Consensus         9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~   48 (51)
T 1bal_A            9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL   48 (51)
T ss_dssp             SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTS
T ss_pred             CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHh
Confidence            4678999999999999999999999999999999999875

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.10  E-value=1.3e-10  Score=126.34  Aligned_cols=63  Identities=25%  Similarity=0.380  Sum_probs=60.8

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus       619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            359999999999999999999999999999999999999999999999999999999999874

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}

Probab=99.08  E-value=1.6e-10  Score=88.42  Aligned_cols=42  Identities=52%  Similarity=0.763  Sum_probs=39.6

Q ss_pred             CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218          135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ  176 (447)
Q Consensus       135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~  176 (447)
                      .+.++|++|+||+++||||+.|.|||++|||+++||++|+..
T Consensus        15 ~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   56 (70)
T 2coo_A           15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   56 (70)
T ss_dssp             SCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred             ccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence            467899999999999999999999999999999999999865

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K

Probab=99.03  E-value=1e-10  Score=87.94  Aligned_cols=42  Identities=29%  Similarity=0.333  Sum_probs=39.2

Q ss_pred             CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHHh
Q 013218          135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ  176 (447)
Q Consensus       135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~  176 (447)
                      ++.+||++|++|+++||||+.|+|||++|||+++||++|++.
T Consensus         9 ~~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   50 (64)
T 2f60_K            9 RFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL   50 (64)
T ss_dssp             HHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence            356899999999999999999999999999999999999864

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.02  E-value=4.1e-10  Score=129.09  Aligned_cols=61  Identities=21%  Similarity=0.361  Sum_probs=59.8

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      .|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|
T Consensus      1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            4999999999999999999999999999999999999999999999999999999999987

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.00  E-value=5.3e-10  Score=127.72  Aligned_cols=65  Identities=18%  Similarity=0.321  Sum_probs=61.4

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+..
T Consensus      1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A         1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred             ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            36999999999999999999999999999999999999999999999999999999999999753

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.81  E-value=5.5e-09  Score=87.96  Aligned_cols=66  Identities=21%  Similarity=0.380  Sum_probs=60.5

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceee-----------------------------EEeCCCCeEEEEEeeCCCC
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATI-----------------------------EITSRYKGKVAQLLHAPGN   86 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~-----------------------------~i~ap~~G~i~~~~v~~g~   86 (447)
                      ..|+|.+|++++||.|++||+|+++++.++..                             .|+||++|+|.++.+++|+
T Consensus         8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~   87 (116)
T 2k32_A            8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD   87 (116)
T ss_dssp             SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred             CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence            47999999999999999999999999886553                             8999999999999999999


Q ss_pred             eeecc-cEEEEEecCC
Q 013218           87 IVKVG-ETLLKLVVGD  101 (447)
Q Consensus        87 ~v~~G-~~l~~i~~~~  101 (447)
                      .|..| ++|+.|.+.+
T Consensus        88 ~v~~g~~~l~~i~~~~  103 (116)
T 2k32_A           88 YVSASTTELVRVTNLN  103 (116)
T ss_dssp             EECTTTSCCEEEECSC
T ss_pred             EEcCCCcEEEEEECCC
Confidence            99999 9999998644

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.75  E-value=2.7e-09  Score=115.88  Aligned_cols=63  Identities=19%  Similarity=0.300  Sum_probs=60.4

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus       656 ~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~  718 (718)
T 3bg3_A          656 MPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE  718 (718)
T ss_dssp             SCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred             CCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence            379999999999999999999999999999999999999999999999999999999998763

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.74  E-value=1.1e-08  Score=88.52  Aligned_cols=62  Identities=21%  Similarity=0.393  Sum_probs=55.8

Q ss_pred             EEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEE---eeCCCCeee---ccc-EEEEEecCC
Q 013218           40 LLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL---LHAPGNIVK---VGE-TLLKLVVGD  101 (447)
Q Consensus        40 i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~---~v~~g~~v~---~G~-~l~~i~~~~  101 (447)
                      |+.+.+ ++||.|++||+||+||+||+..+|.||.+|+|.++   +++.|+.|.   .|+ .|+.|...+
T Consensus        47 i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~  116 (136)
T 1zko_A           47 VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD  116 (136)
T ss_dssp             EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred             cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECC
Confidence            455545 99999999999999999999999999999999999   889999998   888 999998643

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.68  E-value=1.1e-08  Score=117.21  Aligned_cols=63  Identities=17%  Similarity=0.274  Sum_probs=54.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      ..|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus      1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp             SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred             CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence            369999999999999999999999999999999999999999999999999999999999875

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.27  E-value=8.1e-07  Score=76.04  Aligned_cols=64  Identities=20%  Similarity=0.278  Sum_probs=51.3

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeC---CCCee---eccc-EEEEEecCC
Q 013218           38 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA---PGNIV---KVGE-TLLKLVVGD  101 (447)
Q Consensus        38 g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~---~g~~v---~~G~-~l~~i~~~~  101 (447)
                      |.|+.+.+ ++||.|++||++|+||++|+..+|.||.+|+|.++...   ..+.|   +-|+ -|+.|...+
T Consensus        36 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~  107 (128)
T 1onl_A           36 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRD  107 (128)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESC
T ss_pred             CCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECC
Confidence            33555555 99999999999999999999999999999999999754   44455   5565 777777543

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.27  E-value=4.3e-07  Score=78.03  Aligned_cols=63  Identities=19%  Similarity=0.213  Sum_probs=50.8

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC---eee---ccc-EEEEEecC
Q 013218           38 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN---IVK---VGE-TLLKLVVG  100 (447)
Q Consensus        38 g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~---~v~---~G~-~l~~i~~~  100 (447)
                      |.|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.++..+.++   .|.   -|+ -|+.|...
T Consensus        36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~  106 (131)
T 1hpc_A           36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPT  106 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEES
T ss_pred             CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEEC
Confidence            44666666 99999999999999999999999999999999999765444   443   344 67777653

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.25  E-value=1.1e-06  Score=75.25  Aligned_cols=63  Identities=14%  Similarity=0.172  Sum_probs=49.7

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCC---Ceee---ccc-EEEEEecC
Q 013218           38 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG---NIVK---VGE-TLLKLVVG  100 (447)
Q Consensus        38 g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g---~~v~---~G~-~l~~i~~~  100 (447)
                      |.|+.+.+ ++|+.|++||+||+||++|+..+|.||.+|+|.++....+   +.|.   -|+ -|+.|...
T Consensus        37 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~  107 (128)
T 3a7l_A           37 GDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKAS  107 (128)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEES
T ss_pred             CceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEEC
Confidence            33555555 9999999999999999999999999999999999976544   3444   444 67777653

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=97.87  E-value=2.1e-05  Score=80.47  Aligned_cols=65  Identities=14%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             ceEEEEEEEc-CCCCeecCCCeEEEEEeC------------------------------------------------cee
Q 013218           36 AECELLKWFV-KEGDEIEEFQPLCAVQSD------------------------------------------------KAT   66 (447)
Q Consensus        36 ~~g~i~~w~v-~~Gd~V~~g~~l~~iet~------------------------------------------------K~~   66 (447)
                      ..|.|.+++| ++||.|++||+|++|++.                                                ...
T Consensus       128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~  207 (413)
T 3ne5_B          128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR  207 (413)
T ss_dssp             SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred             cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence            4699999998 999999999999999942                                                124


Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..|+||++|+|.++.+++|+.|..|++|+.|...
T Consensus       208 ~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~  241 (413)
T 3ne5_B          208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM  241 (413)
T ss_dssp             EEEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred             EEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence            5799999999999999999999999999999753

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=97.82  E-value=6.9e-06  Score=79.05  Aligned_cols=65  Identities=25%  Similarity=0.296  Sum_probs=57.1

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDK---------------------------------------------------   64 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K---------------------------------------------------   64 (447)
                      ..|+|.+++|++||.|++||+|+++++..                                                   
T Consensus        29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~  108 (277)
T 2f1m_A           29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ  108 (277)
T ss_dssp             SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred             ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence            46999999999999999999999998642                                                   


Q ss_pred             --------------------eeeEEeCCCCeEEEEEeeCCCCeeecc--cEEEEEecC
Q 013218           65 --------------------ATIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVVG  100 (447)
Q Consensus        65 --------------------~~~~i~ap~~G~i~~~~v~~g~~v~~G--~~l~~i~~~  100 (447)
                                          ....|+||++|+|..+.+.+|+.|..|  ++|+.|...
T Consensus       109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~  166 (277)
T 2f1m_A          109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL  166 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecC
Confidence                                124799999999999999999999999  589988754

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=97.82  E-value=2.4e-05  Score=77.99  Aligned_cols=65  Identities=18%  Similarity=0.222  Sum_probs=58.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------   65 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~--------------------------------------------------   65 (447)
                      ..|+|.+++|++||.|++||+|+++++...                                                  
T Consensus        64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a  143 (359)
T 3lnn_A           64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS  143 (359)
T ss_dssp             SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999997532                                                  


Q ss_pred             --------------------------eeEEeCCCCeEEEEEeeCCCCeeec-ccEEEEEecC
Q 013218           66 --------------------------TIEITSRYKGKVAQLLHAPGNIVKV-GETLLKLVVG  100 (447)
Q Consensus        66 --------------------------~~~i~ap~~G~i~~~~v~~g~~v~~-G~~l~~i~~~  100 (447)
                                                ...|+||++|+|.++.+..|+.|.. |++|+.|...
T Consensus       144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~  205 (359)
T 3lnn_A          144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADL  205 (359)
T ss_dssp             HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECC
T ss_pred             HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecC
Confidence                                      2579999999999999999999999 9999998754

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=97.75  E-value=2.7e-05  Score=77.06  Aligned_cols=65  Identities=22%  Similarity=0.278  Sum_probs=56.5

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDK---------------------------------------------------   64 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K---------------------------------------------------   64 (447)
                      ..|+|.+++|++||.|++||+|+++++..                                                   
T Consensus        38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~  117 (341)
T 3fpp_A           38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD  117 (341)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred             CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence            46999999999999999999999998641                                                   


Q ss_pred             ----------------------------------eeeEEeCCCCeEEEEEeeCCCCeeecccE---EEEEecC
Q 013218           65 ----------------------------------ATIEITSRYKGKVAQLLHAPGNIVKVGET---LLKLVVG  100 (447)
Q Consensus        65 ----------------------------------~~~~i~ap~~G~i~~~~v~~g~~v~~G~~---l~~i~~~  100 (447)
                                                        ....|+||++|+|.++.+..|+.|..|++   |+.|...
T Consensus       118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~  190 (341)
T 3fpp_A          118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM  190 (341)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecC
Confidence                                              11459999999999999999999999987   8887653

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=97.72  E-value=4.7e-05  Score=64.61  Aligned_cols=60  Identities=20%  Similarity=0.266  Sum_probs=47.5

Q ss_pred             eEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeC
Q 013218           23 IVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA   83 (447)
Q Consensus        23 ~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~   83 (447)
                      +..|-+-++... .-|.|+-+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++...
T Consensus        18 ~~~vGITd~Aq~-~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~   78 (125)
T 3klr_A           18 VGTVGISNFAQE-ALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKA   78 (125)
T ss_dssp             EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred             EEEEeeCHHHHh-hCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhh
Confidence            445555444432 2366777766 79999999999999999999999999999999998544

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.58  E-value=9.1e-05  Score=64.07  Aligned_cols=60  Identities=18%  Similarity=0.254  Sum_probs=46.1

Q ss_pred             eEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeC
Q 013218           23 IVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA   83 (447)
Q Consensus        23 ~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~   83 (447)
                      +..|-+-++... .-|.|+-+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++.-.
T Consensus        40 ~~~VGITd~Aq~-~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~  100 (143)
T 3mxu_A           40 VVTVGITDYAQE-QLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAA  100 (143)
T ss_dssp             EEEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred             EEEEeeCHHHHh-hcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence            444544444332 2355666655 89999999999999999999999999999999998543

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.53  E-value=3.5e-05  Score=77.51  Aligned_cols=64  Identities=19%  Similarity=0.321  Sum_probs=56.4

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDK---------------------------------------------------   64 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K---------------------------------------------------   64 (447)
                      ..|+|.+++|++||.|++||+|++|+...                                                   
T Consensus        50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~  129 (369)
T 1vf7_A           50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE  129 (369)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999997532                                                   


Q ss_pred             ------eeeEEeCCCCeEEEEEeeCCCCeeecc--cEEEEEec
Q 013218           65 ------ATIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVV   99 (447)
Q Consensus        65 ------~~~~i~ap~~G~i~~~~v~~g~~v~~G--~~l~~i~~   99 (447)
                            ....|+||++|+|.++.+++|+.|..|  ++|+.|..
T Consensus       130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~  172 (369)
T 1vf7_A          130 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQ  172 (369)
T ss_dssp             HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEEC
T ss_pred             HHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEec
Confidence                  124799999999999999999999995  89998875

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.51  E-value=9.5e-05  Score=63.62  Aligned_cols=60  Identities=17%  Similarity=0.221  Sum_probs=47.0

Q ss_pred             CceEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218           21 SGIVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL   81 (447)
Q Consensus        21 ~~~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~   81 (447)
                      +.+..|-+-++... .-|.|+-+.. ++|++|++||.++.||++|+..+|.||.+|+|.++.
T Consensus        33 ~~~~~VGITd~Aq~-~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN   93 (137)
T 3tzu_A           33 DGPVRVGITSVAVE-ALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN   93 (137)
T ss_dssp             SSCEEEEECHHHHH-HHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred             CCEEEEeeCHHHHh-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence            44555555544432 2356666655 899999999999999999999999999999999984

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.27  E-value=0.00037  Score=60.98  Aligned_cols=44  Identities=16%  Similarity=0.208  Sum_probs=38.8

Q ss_pred             EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218           38 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL   81 (447)
Q Consensus        38 g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~   81 (447)
                      |.|+-+.. ++|+.|++||+++.||+.|+..+|.||.+|+|.++.
T Consensus        59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN  103 (155)
T 3hgb_A           59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN  103 (155)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence            45555544 799999999999999999999999999999999884

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.01  E-value=3.8e-05  Score=76.80  Aligned_cols=63  Identities=24%  Similarity=0.360  Sum_probs=54.1

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc---------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDK---------------------------------------------------   64 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K---------------------------------------------------   64 (447)
                      ..|+|.+++|++||.|++||+|+++++..                                                   
T Consensus        39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~  118 (369)
T 4dk0_A           39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN  118 (369)
T ss_dssp             SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred             CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence            46899999999999999999999998642                                                   


Q ss_pred             ----------------------------------eeeEEeCCCCeEEEEEeeCCCCeeecccE---EEEEe
Q 013218           65 ----------------------------------ATIEITSRYKGKVAQLLHAPGNIVKVGET---LLKLV   98 (447)
Q Consensus        65 ----------------------------------~~~~i~ap~~G~i~~~~v~~g~~v~~G~~---l~~i~   98 (447)
                                                        ....|+||++|+|.++.+++|+.|..|++   |+.|.
T Consensus       119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~  189 (369)
T 4dk0_A          119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVA  189 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEc
Confidence                                              01349999999999999999999999998   55554

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.67  E-value=0.00086  Score=54.47  Aligned_cols=47  Identities=19%  Similarity=0.285  Sum_probs=42.6

Q ss_pred             CCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           54 FQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        54 g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      |..+|.++.++....|.||.+|+|.++++++||.|..||+|+.++..
T Consensus         5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~   51 (100)
T 2dn8_A            5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM   51 (100)
T ss_dssp             CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEET
T ss_pred             CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEec
Confidence            55668888888888999999999999999999999999999999853

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=96.41  E-value=0.0074  Score=59.66  Aligned_cols=61  Identities=20%  Similarity=0.262  Sum_probs=51.2

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      .| +.+.+++.||.|++||+|++|..    .....+|.||.+|+|...  ...-.|..|+.|+.|...
T Consensus       265 ~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~  329 (331)
T 3na6_A          265 DG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVV  329 (331)
T ss_dssp             CE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECB
T ss_pred             Ce-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEecc
Confidence            45 66778999999999999999996    356789999999999775  446788899999998754

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=96.28  E-value=0.011  Score=59.06  Aligned_cols=62  Identities=19%  Similarity=0.120  Sum_probs=53.5

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..| +.+..++.||.|++||+|++|+.    ++...+|.||.+|+|...  .....|..|+.|+.|...
T Consensus       274 ~~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~  339 (354)
T 3cdx_A          274 RTG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMED  339 (354)
T ss_dssp             SCE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEE
T ss_pred             CCE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeee
Confidence            345 67888999999999999999997    578899999999999765  578889999999999754

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=96.11  E-value=0.0065  Score=45.60  Aligned_cols=33  Identities=12%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             EEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           68 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        68 ~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      .|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus         1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~   33 (72)
T 1z6h_A            1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM   33 (72)
T ss_dssp             CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred             CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence            378999999999999999999999999999864

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=96.11  E-value=0.013  Score=58.69  Aligned_cols=58  Identities=16%  Similarity=0.210  Sum_probs=49.8

Q ss_pred             EEEEEcCCCCeecCCCeEEEEEe------CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           40 LLKWFVKEGDEIEEFQPLCAVQS------DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        40 i~~w~v~~Gd~V~~g~~l~~iet------~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      |.+..++.||.|++||+|++|..      .....+|.||.+|+|...  ...-.|..|+.|+.|..
T Consensus       300 l~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~--~~~p~V~~G~~l~~i~~  363 (368)
T 3fmc_A          300 MVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH--FASASVHQGTELYKVMT  363 (368)
T ss_dssp             EEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE--CSSSEECTTCEEEEEEE
T ss_pred             EEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEee
Confidence            56689999999999999999987      457789999999999665  55578999999998864

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=95.99  E-value=0.0091  Score=44.93  Aligned_cols=35  Identities=31%  Similarity=0.409  Sum_probs=32.0

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..|.||.+|+|.++++++|+.|..||+|+.++...
T Consensus         6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~   40 (74)
T 2d5d_A            6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMK   40 (74)
T ss_dssp             CEEECSSCEEEEEECCCTTCEECTTCEEEEEEETT
T ss_pred             eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEeccc
Confidence            46899999999999999999999999999998643

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=95.91  E-value=0.0092  Score=45.43  Aligned_cols=35  Identities=34%  Similarity=0.458  Sum_probs=32.3

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ...|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus         8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~   42 (77)
T 1dcz_A            8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM   42 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred             CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence            35789999999999999999999999999999864

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=95.83  E-value=0.012  Score=51.48  Aligned_cols=60  Identities=12%  Similarity=0.174  Sum_probs=52.3

Q ss_pred             ceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEeCCCCeEEEE--------------------------------
Q 013218           36 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQ--------------------------------   79 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~----g~~l~~iet~K~~~~i~ap~~G~i~~--------------------------------   79 (447)
                      .+|+|+.+. ++.|.|-.    |+.++...++   ..+.||++|+|..                                
T Consensus        14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~   89 (154)
T 2gpr_A           14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN   89 (154)
T ss_dssp             SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred             CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence            579999984 88888766    8999988876   5899999999997                                


Q ss_pred             ---EeeCCCCeeecccEEEEEec
Q 013218           80 ---LLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        80 ---~~v~~g~~v~~G~~l~~i~~   99 (447)
                         ++|++||.|..||+|+.+..
T Consensus        90 gF~~~V~~Gd~V~~G~~L~~~d~  112 (154)
T 2gpr_A           90 GFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             SEEECCCTTCEECTTCEEEEECH
T ss_pred             ceEEEEcCCCEEcCCCEEEEECH
Confidence               48999999999999999874

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=95.81  E-value=0.0086  Score=52.89  Aligned_cols=60  Identities=15%  Similarity=0.255  Sum_probs=52.8

Q ss_pred             ceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218           36 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------   80 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~----g~~l~~iet~K~~~~i~ap~~G~i~~~-------------------------------   80 (447)
                      ..|+|+.+. ++.|.+-.    |+.++...++   ..+.||++|+|..+                               
T Consensus        19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~   94 (161)
T 1f3z_A           19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE   94 (161)
T ss_dssp             SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred             CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence            579999985 78888766    8999988876   58899999999988                               


Q ss_pred             ----eeCCCCeeecccEEEEEec
Q 013218           81 ----LHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        81 ----~v~~g~~v~~G~~l~~i~~   99 (447)
                          +|++||.|..||+|+.+..
T Consensus        95 gF~~~V~~Gd~V~~G~~L~~~d~  117 (161)
T 1f3z_A           95 GFKRIAEEGQRVKVGDTVIEFDL  117 (161)
T ss_dssp             TEEECSCTTCEECTTCEEEEECH
T ss_pred             ccEEEEeCcCEECCCCEEEEECH
Confidence                8999999999999999974

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=95.50  E-value=0.015  Score=48.10  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=31.8

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ..|.|+.+|+|.++++++|+.|..|++|+.++..
T Consensus         2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   35 (116)
T 2k32_A            2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD   35 (116)
T ss_dssp             EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred             eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence            5789999999999999999999999999999864

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=95.49  E-value=0.0096  Score=46.53  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=32.5

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ...|.||.+|+|.++++++|+.|..||+|+.++...
T Consensus         5 ~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k   40 (84)
T 2kcc_A            5 PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMK   40 (84)
T ss_dssp             TTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSS
T ss_pred             CceEECCCCEEEEEEECCCCCEECCCCEEEEEEecc
Confidence            346999999999999999999999999999998543

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=95.30  E-value=0.012  Score=51.92  Aligned_cols=60  Identities=18%  Similarity=0.254  Sum_probs=52.5

Q ss_pred             ceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218           36 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------   80 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~----g~~l~~iet~K~~~~i~ap~~G~i~~~-------------------------------   80 (447)
                      ..|+|+.+ .++.|.+-.    |+.++...++   ..+.||++|+|..+                               
T Consensus        19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~   94 (162)
T 1ax3_A           19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE   94 (162)
T ss_dssp             CSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred             CceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence            57999998 778888766    8999988873   58899999999988                               


Q ss_pred             ----eeCCCCeeecccEEEEEec
Q 013218           81 ----LHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        81 ----~v~~g~~v~~G~~l~~i~~   99 (447)
                          +|++||.|..||+|+.+..
T Consensus        95 gF~~~V~~Gd~V~~G~~L~~~d~  117 (162)
T 1ax3_A           95 GFTSFVSEGDRVEPGQKLLEVDL  117 (162)
T ss_dssp             TEEESCCCCSEECSEEEEEEECH
T ss_pred             ccEEEEeCCCEEcCCCEEEEECH
Confidence                8999999999999999974

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=94.47  E-value=0.032  Score=44.92  Aligned_cols=37  Identities=16%  Similarity=0.333  Sum_probs=33.0

Q ss_pred             eeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           65 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        65 ~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ....|.|+.+|+|.++++++|+.|..||+|+.|+...
T Consensus        13 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~   49 (99)
T 2ejm_A           13 TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMK   49 (99)
T ss_dssp             CCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSS
T ss_pred             CceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccc
Confidence            3456899999999999999999999999999998643

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=94.24  E-value=0.088  Score=51.77  Aligned_cols=61  Identities=18%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet----~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      ..| +....++.|+.|++||+|+++-.    ++...+|.||.+|+|.-.  ...-.|..|+.|+.|..
T Consensus       264 ~~G-~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p~V~~Gd~l~~ia~  328 (332)
T 2qj8_A          264 SPG-IFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAMYVQGNEEVAILAR  328 (332)
T ss_dssp             SSE-EEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSEEECTTCEEEEEEE
T ss_pred             CCe-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCCeeCCCCEEEEEee
Confidence            345 45577999999999999999964    567789999999999665  45667888888888764

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=94.15  E-value=0.04  Score=42.25  Aligned_cols=35  Identities=23%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             eEEeCCCCeEEEEE-------eeCCCCeeecccEEEEEecCC
Q 013218           67 IEITSRYKGKVAQL-------LHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        67 ~~i~ap~~G~i~~~-------~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..|.||..|++.++       ++++|+.|..||+|+.++...
T Consensus         5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k   46 (80)
T 1bdo_A            5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMK   46 (80)
T ss_dssp             EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETT
T ss_pred             eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEecc
Confidence            46899999999998       899999999999999998643

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=94.08  E-value=0.024  Score=45.25  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=31.7

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ...|.||.+|+|.++++++||.|..||+|+.++..
T Consensus        25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~   59 (94)
T 2jku_A           25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM   59 (94)
T ss_dssp             CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred             ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence            45689999999999999999999999999999864

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=93.91  E-value=0.056  Score=51.36  Aligned_cols=52  Identities=10%  Similarity=0.045  Sum_probs=39.1

Q ss_pred             CCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           47 EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        47 ~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      .|+.-..=..-+.|+.. -...|.++.+|+|.++++++||.|..||+|+.|+.
T Consensus         4 ~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~   55 (277)
T 2f1m_A            4 TEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP   55 (277)
T ss_dssp             ------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECC
T ss_pred             eeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECc
Confidence            34443444455677754 46789999999999999999999999999999975

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=93.87  E-value=0.053  Score=49.02  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=28.1

Q ss_pred             EEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEE
Q 013218           41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL   80 (447)
Q Consensus        41 ~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~   80 (447)
                      ..++|++|+.|++||.||+-.      .|-+..+|++.+.
T Consensus        21 A~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~   54 (193)
T 2xha_A           21 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDV   54 (193)
T ss_dssp             CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred             CEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence            367899999999999999864      7888888888543

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=93.26  E-value=0.044  Score=41.67  Aligned_cols=32  Identities=13%  Similarity=0.309  Sum_probs=28.8

Q ss_pred             eCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           70 TSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        70 ~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      .++.+|+|.++++++||.|..||+|+.++...
T Consensus        11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k   42 (77)
T 2l5t_A           11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDK   42 (77)
T ss_dssp             SSCCCEEEEECSCCTTCEECSCCCCCEEESSS
T ss_pred             CCCccEEEEEEEeCCCCEECCCCEEEEEEccc
Confidence            45789999999999999999999999998643

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=92.91  E-value=0.12  Score=50.94  Aligned_cols=57  Identities=16%  Similarity=0.287  Sum_probs=46.8

Q ss_pred             EcCCCCeecCCCeEEEEEeC-ceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           44 FVKEGDEIEEFQPLCAVQSD-KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        44 ~v~~Gd~V~~g~~l~~iet~-K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      .++.|+.-..=..-+.|+.+ .-...|.++.+|+|.++++++|+.|..|++|+.|+..
T Consensus        34 ~v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~   91 (359)
T 3lnn_A           34 PATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA   91 (359)
T ss_dssp             ECEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred             EeeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            35555555555666788875 6778999999999999999999999999999999863

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=92.79  E-value=0.11  Score=50.71  Aligned_cols=56  Identities=18%  Similarity=0.213  Sum_probs=42.5

Q ss_pred             EcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           44 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        44 ~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      .++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|+.|+..
T Consensus        10 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~   65 (341)
T 3fpp_A           10 IVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE   65 (341)
T ss_dssp             ---CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred             EEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence            34555544444455677755 466899999999999999999999999999999753

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=92.52  E-value=0.072  Score=40.70  Aligned_cols=31  Identities=29%  Similarity=0.389  Sum_probs=27.9

Q ss_pred             CCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           71 SRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        71 ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ++.+|+|.++++++||.|..||+|+.++...
T Consensus        12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k   42 (79)
T 1ghj_A           12 SIADGTVATWHKKPGEAVKRDELIVDIETDK   42 (79)
T ss_dssp             SCSCEEECCCSSCTTSEECSSCEEEEEECSS
T ss_pred             CCCCEEEEEEEcCCCCEECCCCEEEEEEccc
Confidence            4579999999999999999999999998643

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=92.15  E-value=0.13  Score=40.07  Aligned_cols=30  Identities=17%  Similarity=0.226  Sum_probs=27.3

Q ss_pred             CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..+|+|.++++++||.|..||+|+.++...
T Consensus        17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k   46 (87)
T 3crk_C           17 MTMGTVQRWEKKVGEKLSEGDLLAEIETDX   46 (87)
T ss_dssp             CCEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred             CCcEEEEEEEcCCCCEEcCCCEEEEEECCc
Confidence            468999999999999999999999998654

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=91.90  E-value=0.19  Score=39.88  Aligned_cols=30  Identities=10%  Similarity=0.075  Sum_probs=27.2

Q ss_pred             CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..+|+|.++++++||.|..||+|+.++...
T Consensus        16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K   45 (93)
T 1k8m_A           16 IREVTVKEWYVKEGDTVSQFDSICEVQSDK   45 (93)
T ss_dssp             SCCEEEEEECCCTTCEECSSSCCEEEECSS
T ss_pred             CCCEEEEEEEcCCcCEECCCCEEEEEEcCC
Confidence            468999999999999999999999998654

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=91.81  E-value=0.19  Score=44.05  Aligned_cols=50  Identities=20%  Similarity=0.172  Sum_probs=42.0

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeE-EeCCCCeEEEEEeeCCC
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKATIE-ITSRYKGKVAQLLHAPG   85 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~-i~ap~~G~i~~~~v~~g   85 (447)
                      .+|.-+-..+.+|+.|.+||.|+-|.|.|.++- ++||++|+|.-+.--++
T Consensus       107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~  157 (169)
T 3d4r_A          107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS  157 (169)
T ss_dssp             ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred             eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence            356677888999999999999999999997665 99999999987654444

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=91.71  E-value=0.11  Score=39.83  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=29.3

Q ss_pred             EeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           69 ITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        69 i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      +-++..|.|.++++++||.|..||+|+.++...
T Consensus        10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k   42 (81)
T 1gjx_A           10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDK   42 (81)
T ss_dssp             CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSS
T ss_pred             CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCC
Confidence            346789999999999999999999999998653

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=91.12  E-value=0.19  Score=38.26  Aligned_cols=28  Identities=14%  Similarity=0.258  Sum_probs=26.2

Q ss_pred             CeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           74 KGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        74 ~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      +|+|.++++++||.|..||+|+.++...
T Consensus        14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~   41 (80)
T 1qjo_A           14 EVEVTEVMVKVGDKVAAEQSLITVEGDK   41 (80)
T ss_dssp             CEEEEECCCCTTCEECBTSEEEEEESSS
T ss_pred             CEEEEEEEcCCCCEECCCCEEEEEEcCC
Confidence            9999999999999999999999998654

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=91.08  E-value=0.19  Score=49.80  Aligned_cols=33  Identities=18%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             EEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEE
Q 013218           41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQ   79 (447)
Q Consensus        41 ~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~   79 (447)
                      ..++|+.|+.|++||.||+-.      .|-|..+|+|.+
T Consensus        61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~   93 (352)
T 2xhc_A           61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD   93 (352)
T ss_dssp             CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred             CEEEecCCCEEcCCCEEEEec------cEEEecceEEEe
Confidence            468899999999999999964      677777777643

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.99  E-value=0.24  Score=39.71  Aligned_cols=29  Identities=21%  Similarity=0.449  Sum_probs=26.6

Q ss_pred             CCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           73 YKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        73 ~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..|+|.++++++||.|..||+|+.++...
T Consensus        20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K   48 (98)
T 2dnc_A           20 EEGNIVKWLKKEGEAVSAGDALCEIETDK   48 (98)
T ss_dssp             SEECEEEESSCTTCEECTTSEEEEEECSS
T ss_pred             ccEEEEEEEcCCCCEeCCCCEEEEEEccc
Confidence            58999999999999999999999998654

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=90.56  E-value=0.02  Score=44.66  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=31.0

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      .+|.+|.-|+|.++++++||.|..||+|+.++...
T Consensus         3 ~~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k   37 (85)
T 2k7v_A            3 KEVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDK   37 (85)
T ss_dssp             SCCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCC
T ss_pred             cEEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccc
Confidence            46778888999999999999999999999997643

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=90.23  E-value=0.2  Score=41.00  Aligned_cols=30  Identities=13%  Similarity=0.292  Sum_probs=27.0

Q ss_pred             CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ...|+|.++++++||.|..||+|+.|+...
T Consensus        19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K   48 (108)
T 2dne_A           19 MQAGTIARWEKKEGDKINEGDLIAEVETDK   48 (108)
T ss_dssp             CCEEEEEECSSCTTCEECTTSEEEEEECSS
T ss_pred             cccEEEEEEEcCCCCEecCCCEEEEEEcCc
Confidence            358999999999999999999999998653

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=90.16  E-value=0.2  Score=49.86  Aligned_cols=54  Identities=15%  Similarity=0.152  Sum_probs=39.0

Q ss_pred             cCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           45 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        45 v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      ++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..||+|+.|+.
T Consensus        23 v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~   76 (369)
T 1vf7_A           23 LEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP   76 (369)
T ss_dssp             ------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred             EEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            4444443333445566654 45689999999999999999999999999999975

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=89.73  E-value=0.26  Score=49.80  Aligned_cols=45  Identities=20%  Similarity=0.255  Sum_probs=37.1

Q ss_pred             eEEEEEeC-ceeeEEeCCCCeEEEEEee-CCCCeeecccEEEEEecC
Q 013218           56 PLCAVQSD-KATIEITSRYKGKVAQLLH-APGNIVKVGETLLKLVVG  100 (447)
Q Consensus        56 ~l~~iet~-K~~~~i~ap~~G~i~~~~v-~~g~~v~~G~~l~~i~~~  100 (447)
                      ..+.|+.+ .....|.++.+|+|.+++| ++||.|..||+|+.|...
T Consensus       110 ~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~  156 (413)
T 3ne5_B          110 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP  156 (413)
T ss_dssp             EEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECC
T ss_pred             EEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCH
Confidence            44555542 4457799999999999998 999999999999999853

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=89.21  E-value=0.2  Score=45.28  Aligned_cols=45  Identities=27%  Similarity=0.368  Sum_probs=36.0

Q ss_pred             cCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEE--------------------------E--eeCCCCeeecccEEE
Q 013218           45 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQ--------------------------L--LHAPGNIVKVGETLL   95 (447)
Q Consensus        45 v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~--------------------------~--~v~~g~~v~~G~~l~   95 (447)
                      |++|+.|+.||+|+      -...|-|..+|+|.=                          +  +|++||.|..|++|+
T Consensus        85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~  157 (193)
T 2xha_A           85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLA  157 (193)
T ss_dssp             CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEE
T ss_pred             cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCcc
Confidence            89999999999998      335567777777641                          2  788999999999886

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=87.74  E-value=0.46  Score=40.11  Aligned_cols=29  Identities=17%  Similarity=0.253  Sum_probs=26.6

Q ss_pred             CCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           73 YKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        73 ~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      .+|+|.++++++||.|..||+|+.|+...
T Consensus        40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K   68 (128)
T 1y8o_B           40 TMGTVQRWEKKVGEKLSEGDLLAEIETDK   68 (128)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred             ccEEEEEEecCCCCEecCCCEEEEEEcCc
Confidence            57999999999999999999999998654

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=87.53  E-value=0.13  Score=39.40  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=27.5

Q ss_pred             CCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           71 SRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        71 ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      +..+|+|.++++++||.|..||+|+.++...
T Consensus        13 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k   43 (80)
T 1pmr_A           13 SVADATVATWHKKPGDAVVRDEVLVEIETDK   43 (80)
T ss_dssp             CCSCEECCBCCCCTTCCBSSSCCBCBCCSSS
T ss_pred             CCccEEEEEEECCCcCEECCCCEEEEEEccc
Confidence            3468999999999999999999999998654

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=87.26  E-value=0.96  Score=40.38  Aligned_cols=60  Identities=13%  Similarity=0.249  Sum_probs=48.0

Q ss_pred             ceEEEEEEEcCCCCeec----CCCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218           36 AECELLKWFVKEGDEIE----EFQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------   80 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~----~g~~l~~iet~K~~~~i~ap~~G~i~~~-------------------------------   80 (447)
                      -.|+++.+ -++-|.|=    -|+-++..=++   ..|.||++|+|..+                               
T Consensus        41 v~G~vi~L-~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~EvLIHIGiDTV~L~G~  116 (183)
T 3our_B           41 LSGEIVNI-EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGVELFVHFGIDTVELKGE  116 (183)
T ss_dssp             SCEEEEEG-GGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred             cceEEEEc-hhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCCEEEEEecccccccCCc
Confidence            46888865 56667652    38888887665   37899999999887                               


Q ss_pred             ----eeCCCCeeecccEEEEEec
Q 013218           81 ----LHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        81 ----~v~~g~~v~~G~~l~~i~~   99 (447)
                          +|++||.|..||+|+.+.-
T Consensus       117 gF~~~V~~Gd~Vk~Gd~L~~fD~  139 (183)
T 3our_B          117 GFTRIAEEGQTVKAGDTVIEFDL  139 (183)
T ss_dssp             TEEECSCTTCEECTTCEEEEECH
T ss_pred             cceEEEeCcCEEcCCCEEEEECH
Confidence                7889999999999999874

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=87.17  E-value=0.36  Score=36.62  Aligned_cols=28  Identities=18%  Similarity=0.184  Sum_probs=25.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSD   63 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~   63 (447)
                      ..|+|.++++++|+.|..|++|+.|+..
T Consensus        48 ~~G~v~~~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A           48 KAGVVKSVSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            4689999999999999999999999753

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=87.07  E-value=0.19  Score=49.67  Aligned_cols=55  Identities=24%  Similarity=0.355  Sum_probs=43.5

Q ss_pred             cCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           45 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        45 v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..||+|+.|+..
T Consensus        12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   66 (369)
T 4dk0_A           12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST   66 (369)
T ss_dssp             CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred             EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence            4445554555556677743 466899999999999999999999999999999754

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=86.94  E-value=0.78  Score=41.38  Aligned_cols=47  Identities=13%  Similarity=0.143  Sum_probs=40.6

Q ss_pred             EEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeee
Q 013218           41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVK   89 (447)
Q Consensus        41 ~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~   89 (447)
                      ..++|++||.|++||.||+.  |.-+..|-+..+|+|.=-.+.+|.++.
T Consensus        62 a~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~~  108 (190)
T 2auk_A           62 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTIT  108 (190)
T ss_dssp             CEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTEE
T ss_pred             CEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcceE
Confidence            46789999999999999977  789999999999999777777776655

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=86.83  E-value=0.57  Score=50.63  Aligned_cols=36  Identities=14%  Similarity=0.165  Sum_probs=32.8

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ...|.||..|+|.+++|++||.|..||+|+.++...
T Consensus       612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK  647 (681)
T 3n6r_A          612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMK  647 (681)
T ss_dssp             CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSS
T ss_pred             CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecC
Confidence            456999999999999999999999999999998654

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=81.65  E-value=1.2  Score=51.28  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=33.5

Q ss_pred             eeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           65 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        65 ~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ....|.||..|+|.+++|++||.|..||+|+.|+...
T Consensus      1166 ~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK 1202 (1236)
T 3va7_A         1166 DAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMK 1202 (1236)
T ss_dssp             TCEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETT
T ss_pred             CCcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecC
Confidence            3457999999999999999999999999999999754

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=81.58  E-value=1.2  Score=50.98  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=32.5

Q ss_pred             eEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           67 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        67 ~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..|.||..|+|.+++|++||.|..||+|+.|+...
T Consensus      1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK 1112 (1150)
T 3hbl_A         1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMK 1112 (1150)
T ss_dssp             SEEECSSSEEEEEECCCTTCEECTTCEEEEEESSS
T ss_pred             ceeecCceEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence            46999999999999999999999999999999654

>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}

Probab=81.03  E-value=48  Score=33.17  Aligned_cols=28  Identities=14%  Similarity=0.022  Sum_probs=25.3

Q ss_pred             EEEEEecccccChHHHHHHHHHHHHHhh
Q 013218          410 TVNIGADHRVLDGATVAKFCNEWKQLIE  437 (447)
Q Consensus       410 ~lslt~DHRvvDG~~aa~Fl~~l~~~Le  437 (447)
                      -+-+++||-++||.-...|+++|.+...
T Consensus       135 ~l~l~~HH~i~Dg~S~~~l~~~l~~~Y~  162 (493)
T 4hvm_A          135 VLGVVAHQMLLDARSRYMVLGAVWQAYY  162 (493)
T ss_dssp             EEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred             EEEEecchhhccHHHHHHHHHHHHHHhC
Confidence            4788999999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	447
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	1e-59
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	1e-49
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	2e-42
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	1e-41
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	8e-39
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	3e-17
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	9e-17
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	1e-16
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-16
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	4e-15
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	8e-14
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-13
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-12
d1w85i_	42	a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl	4e-11
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	7e-10
d2cyua1	39	a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa	2e-09

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  192 bits (490), Expect = 1e-59
 Identities = 60/233 (25%), Positives = 118/233 (50%), Gaps = 5/233 (2%)

Query: 216 DKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKL-KASFQNNNSDPNIKHTFL 273
           +K VP+   ++ + + +  A           E+N   ++ L K   +       I+  F+
Sbjct: 4   EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFM 63

Query: 274 PSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSIL 333
              +K++  A+ +YP +N+  + +  +V+     ++ +A++T  GL  P +++V +L + 
Sbjct: 64  SFYVKAVVEALKRYPEVNASIDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMA 121

Query: 334 EITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEK 393
           +I K++  L    +D +L   D +GG  T++N G  G     P++N P+ AI+ M  I+ 
Sbjct: 122 DIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKD 181

Query: 394 VPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM 446
            P  + +G V   P+M + +  DHR++DG     F    K+L+E+P  LLL +
Sbjct: 182 RPM-AVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  166 bits (422), Expect = 1e-49
 Identities = 82/230 (35%), Positives = 140/230 (60%), Gaps = 2/230 (0%)

Query: 216 DKTVPLRGFQRTMVKTMSMAAK-IPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLP 274
           +    + G +R + K M  +    PH   ++E +   LV  +  F+   ++  IK TFLP
Sbjct: 14  ETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLP 73

Query: 275 SLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILE 334
            ++K+L  A+ +YP +N+  ++E+ E+I K  +NIGIA  T  GL VP IK+     I  
Sbjct: 74  YVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFA 133

Query: 335 ITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKV 394
           + +E++ L + A+D +L P +  G + T++NIG+ GG++  P++N PEVAI+ +GRI + 
Sbjct: 134 LAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEK 193

Query: 395 PRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444
           P +  DG +  +P++ +++  DHR++DGAT  K  N  K+L+ +PELLL+
Sbjct: 194 PIV-RDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 242

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score =  148 bits (374), Expect = 2e-42
 Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 2/233 (0%)

Query: 213 YPDDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHT 271
           Y + + VP+    +     +  +   +PH    E  +   L   + + +       +K T
Sbjct: 12  YGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLT 71

Query: 272 FLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLS 331
            LP L+K+ +  + + P  NS        +I K   +IG A+ T  GL VP I+NV   S
Sbjct: 72  VLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKS 131

Query: 332 ILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRI 391
           +L++  E + L + A+  +L      G   T+S++G IGG    P++N PEVAI+ + + 
Sbjct: 132 LLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKA 191

Query: 392 EKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL 444
              P   D     P  ++ +++  D RV++GA  A+F      L+ +   +LL
Sbjct: 192 SMQPVW-DGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  145 bits (366), Expect = 1e-41
 Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 15/201 (7%)

Query: 239 PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES 298
             F    +I+   L K            +  + F P +I  ++ A++++  +     ++ 
Sbjct: 26  CGFSLTSKIDITTLKKSL---------DDSAYKFYPVMIYLIAQAVNQFDELRMAIKDD- 75

Query: 299 LEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSG 358
            E+I+  S +    +  Q       +    S  I +       + +  K +         
Sbjct: 76  -ELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVT 134

Query: 359 GTITLSNIGAIGGKFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHR 418
               L NI A+                     I  + +   +G+     ++ +++   H 
Sbjct: 135 PENHL-NISALPWVNFDSFNLNVANFTDYFAPIITMAKYQQEGD---RLLLPLSVQVHHA 190

Query: 419 VLDGATVAKFCNEWKQLIENP 439
           V DG  VA+F N  ++L  + 
Sbjct: 191 VCDGFHVARFINRLQELCNSK 211

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  137 bits (346), Expect = 8e-39
 Identities = 28/206 (13%), Positives = 63/206 (30%), Gaps = 24/206 (11%)

Query: 239 PHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES 298
             ++   +++  A +K              KH F P+ I  L+  M+ +P       +  
Sbjct: 27  CTYNQTVQLDITAFLKTV---------KKNKHKFYPAFIHILARLMNAHPEFRMAMKDG- 76

Query: 299 LEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDN-ELNPADNS 357
            E+++  S +    +  +      ++ +       +     S+      +N    P    
Sbjct: 77  -ELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFI 135

Query: 358 GGTITLSNIGAIGGKFGAPLLNLPE---VAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIG 414
                +S    +        +   +     +  MG+                 +M + I 
Sbjct: 136 ENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYT-----QGDK----VLMPLAIQ 186

Query: 415 ADHRVLDGATVAKFCNEWKQLIENPE 440
             H V DG  V +  NE +Q  +  +
Sbjct: 187 VHHAVCDGFHVGRMLNELQQYCDEWQ 212

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 74.0 bits (182), Expect = 3e-17
 Identities = 19/78 (24%), Positives = 37/78 (47%)

Query: 24  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83
           VD+ +    E +A+  +  W  K GD +   + L  +++DK  +E+ +   G +  +L  
Sbjct: 3   VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62

Query: 84  PGNIVKVGETLLKLVVGD 101
            G  V   + L +L  G+
Sbjct: 63  EGTTVTSRQILGRLREGN 80

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (179), Expect = 9e-17
 Identities = 32/82 (39%), Positives = 49/82 (59%)

Query: 21  SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL 80
             +V   L+  GEGI E  + +W+VKEGD + +F  +C VQSDKA++ ITSRY G + +L
Sbjct: 2   GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61

Query: 81  LHAPGNIVKVGETLLKLVVGDS 102
            +   +I  VG+ L+ +     
Sbjct: 62  YYNLDDIAYVGKPLVDIETEAL 83

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 72.2 bits (177), Expect = 1e-16
 Identities = 20/77 (25%), Positives = 40/77 (51%)

Query: 24  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83
           +D+      E IA+  +  W  K G+ ++  + +  +++DK  +E+ +   G +A+++  
Sbjct: 2   IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61

Query: 84  PGNIVKVGETLLKLVVG 100
            G+ V  GE L KL  G
Sbjct: 62  EGDTVLSGELLGKLTEG 78

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 71.3 bits (175), Expect = 2e-16
 Identities = 37/74 (50%), Positives = 48/74 (64%)

Query: 24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83
           +  L   GEGI E E++KWFVK GDE+ E   LC VQ+DKA +EI S  KGKV ++L  
Sbjct: 2  FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVP 61

Query: 84 PGNIVKVGETLLKL 97
           G +  VG+TL+ L
Sbjct: 62 EGTVATVGQTLITL 75

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (168), Expect = 4e-15
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 24  VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 83
           + V L      +    + +W  K G+++ E   L  +++DKATI    + +G +A++L  
Sbjct: 6   MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVP 65

Query: 84  PGN-IVKVGETLLKLVVGDSAVPTPSS 109
            G   V +G  L  +V  ++ +   + 
Sbjct: 66  EGTRDVPLGTPLCIIVEKEADISAFAD 92

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 64.4 bits (157), Expect = 8e-14
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
           +V++ +   G      +++   V  GD I     L  +++DKAT+++ +   G V ++  
Sbjct: 2   LVELKVPDIGG-HENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKV 60

Query: 83  APGNIVKVGETLLKLVVGDSA 103
             G+ +  G  ++ +    +A
Sbjct: 61  KVGDKISEGGLIVVVEAEGTA 81

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 62.6 bits (152), Expect = 3e-13
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)

Query: 21  SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL 80
           S I+ VP    G    + E+++  VK GD IE  Q L  ++S KA++E+ S   G V  +
Sbjct: 1   SEIIRVP--DIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSV 55

Query: 81  LHAPGNIVKVGETLLKLVVGDSA 103
               G+ +K G+ +++L     A
Sbjct: 56  SVKLGDKLKEGDAIIELEPAAGA 78

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 60.2 bits (146), Expect = 2e-12
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 23  IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 82
           + +V +   G    E E+ +  VK GD++   Q L  V+ DKA++E+ + + G V +L  
Sbjct: 2   VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59

Query: 83  APGNIVKVGETLLKLVVGDSA 103
             G+ VK G  ++   V  +A
Sbjct: 60  NVGDKVKTGSLIMIFEVEGAA 80

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 55.3 bits (134), Expect = 4e-11
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 136 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 173
           V+A P+VR  A+  G+++  V  TGK+GRVLKED+  +
Sbjct: 2   VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAF 39

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 53.0 bits (127), Expect = 7e-10
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 14 ALADLPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRY 73
          A A     G +  PLA T        + K  VKEGD ++  Q +  +++ K   EI +  
Sbjct: 1  AGAGKAGEGEIPAPLAGT--------VSKILVKEGDTVKAGQTVLVLEAMKMETEINAPT 52

Query: 74 KGKVAQLLHAPGNIVKVGETLLKL 97
           GKV ++L    + V+ G+ L+K+
Sbjct: 53 DGKVEKVLVKERDAVQGGQGLIKI 76

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 51.0 bits (123), Expect = 2e-09
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 139 TPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 176
           +P +R L   + ++   +  TG  GR+ +EDV K+  +
Sbjct: 2   SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAK 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	100.0
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	100.0
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	100.0
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.87
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.86
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.86
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.84
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.83
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.8
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.78
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.78
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.59
d1w85i_	42	E3/E1 binding domain of dihydrolipoyl acetyltransf	99.54
d2cyua1	39	E3-binding domain of dihydrolipoamide succinyltran	99.47
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.44
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	97.11
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	97.01
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	96.58
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	96.54
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	95.02
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	94.98
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	94.76
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	94.68
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	94.61
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	93.86
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	91.79
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	91.65
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	91.64
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	90.18
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	88.01
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	87.1
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	85.86
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	85.63
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	82.77
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	82.54
d1qpoa2	115	Quinolinic acid phosphoribosyltransferase (Nicotin	80.09

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5e-62  Score=460.85  Aligned_cols=229  Identities=26%  Similarity=0.517  Sum_probs=218.7

Q ss_pred             CCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCC-CCCCccchHHHHHHHHHHHHhcCcccce
Q 013218          215 DDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNS  292 (447)
Q Consensus       215 ~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~-~~g~~~s~~~~~vkAv~~al~~~P~ln~  292 (447)
                      .++++|++++||.|+++|.+|+ ++||||++.+||+|+|+++|+++++... ..|.++|+++|++||+++||.+||++|+
T Consensus         3 ~ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na   82 (233)
T d1scza_           3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNA   82 (233)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTC
T ss_pred             CCcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhhe
Confidence            3567899999999999999995 8999999999999999999999876442 4578999999999999999999999999


Q ss_pred             EEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCc
Q 013218          293 CFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGK  372 (447)
Q Consensus       293 ~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~  372 (447)
                      +|+++  ++++++++|||+||++++||++|||++++++++.+|+++++++++++|+|+|+++|++||||||||+|++|+.
T Consensus        83 ~~~~~--~i~~~~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~  160 (233)
T d1scza_          83 SIDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSL  160 (233)
T ss_dssp             EEETT--EEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCC
T ss_pred             EEcCC--eEEEeccceEEEEEEcCCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCccccce
Confidence            99876  8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhhcC
Q 013218          373 FGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLLQM  446 (447)
Q Consensus       373 ~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~~~  446 (447)
                      +|+|+|||||+|||++|++.++|++. ||+++++++|++||+||||++||+++|+||++|+++||||+.||+||
T Consensus       161 ~~tpii~ppq~aIl~vG~i~~~pv~~-~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~lE~P~~lll~~  233 (233)
T d1scza_         161 MSTPIINPPQSAILGMHAIKDRPMAV-NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV  233 (233)
T ss_dssp             CCCCCCCTTCSEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred             eeeeecCCCCceEEecccceeecccc-CCeEEEEEEeEEEEEhhcchhccHHHHHHHHHHHHHHhCHHHHhhCC
Confidence            99999999999999999999999985 78999999999999999999999999999999999999999999986

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=100.00  E-value=4.4e-61  Score=458.09  Aligned_cols=231  Identities=26%  Similarity=0.450  Sum_probs=220.7

Q ss_pred             CCCCceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccc
Q 013218          213 YPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMN  291 (447)
Q Consensus       213 ~~~~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln  291 (447)
                      .++.+++|++++||+||++|++|+ ++||||++.++|+|+|+++|+.+++..+..|.++|+++|++||++.||++||.+|
T Consensus        12 ~G~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~~~~~~k~t~~~~iikA~a~Al~~~P~~N   91 (243)
T d1dpba_          12 YGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFN   91 (243)
T ss_dssp             SSCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGG
T ss_pred             CCCcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHhhhhh
Confidence            345678999999999999999994 7999999999999999999998876555678899999999999999999999999


Q ss_pred             eEEccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCC
Q 013218          292 SCFNEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGG  371 (447)
Q Consensus       292 ~~~~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~  371 (447)
                      +.|++++..+++++++|||+||++++||++|||++++++++.+|++++++|++++|+|+|+++|++||||||||+|++|+
T Consensus        92 s~~~~~~~~~~~~~~inigiAv~~~~GL~vPVI~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~d~~ggTfTiSNlG~~G~  171 (243)
T d1dpba_          92 SSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGG  171 (243)
T ss_dssp             EEECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCC
T ss_pred             hccccccccceeecccceeeeeccCcceeeeeecchhhhhHHHHHHHHHHHHHHhhhcccccccccCceeEEeccCCccc
Confidence            99998777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          372 KFGAPLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       372 ~~~~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      .+|+|+|||||+|||++|++.++|+++ ||++++|++|++||+||||++||+++|+||++|+++||||+.|||
T Consensus       172 ~~~tpiInppq~aIlgvG~i~~~pv~~-~~~i~~r~~m~ltls~DHRvidGa~aa~FL~~l~~~lE~P~~lll  243 (243)
T d1dpba_         172 TAFTPIVNAPEVAILGVSKASMQPVWD-GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL  243 (243)
T ss_dssp             SCCCCCCCTTSSEEEEECCCEEEEEEC-SSSEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             eeEEeeeccccceeeecccceeeEEEE-CCEEEEEEEEEEEEEeecccccHHHHHHHHHHHHHHHhCHHHHhC
Confidence            999999999999999999999999995 789999999999999999999999999999999999999999986

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1e-60  Score=456.01  Aligned_cols=228  Identities=36%  Similarity=0.666  Sum_probs=218.5

Q ss_pred             CceecCchHHHHHHHHHHHhc-CcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEE
Q 013218          216 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF  294 (447)
Q Consensus       216 ~~~~~~s~~rk~ia~~m~~s~-~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~  294 (447)
                      ++++|++++||+|+++|++|+ ++||||++.++|+|+|+++|+++|+..+..|.++|+++|++||+++||++||.+|++|
T Consensus        14 ~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~~~~~g~klT~~~~likA~a~AL~~~P~~Na~~   93 (242)
T d1b5sa_          14 ETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSI   93 (242)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSCCB
T ss_pred             ceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhhhhhcccccchhhHHHHHHHHHHHHhhhhheEE
Confidence            566899999999999999996 7999999999999999999999986555678899999999999999999999999999


Q ss_pred             ccCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCCeEEEEecCCCCCccc
Q 013218          295 NEESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNELNPADNSGGTITLSNIGAIGGKFG  374 (447)
Q Consensus       295 ~~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~l~~~~~~~gtftISnlg~~G~~~~  374 (447)
                      +++.+.+.+++++|+|+||++++||++|||++++++++.+|+++++++++++|+|+|.++|++||||||||+|++|+.+|
T Consensus        94 ~~~~~~i~~~~~v~igiAv~~~~gL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~gkl~~~dl~ggtftisnlG~~G~~~f  173 (242)
T d1b5sa_          94 DDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWF  173 (242)
T ss_dssp             CTTSSCBCCCSSCCEEECEECSSCEECCEETTGGGCCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSCEEEECTTTCCSCC
T ss_pred             cCCCCEEEEeeeeEEEEEecCCCceEeeeecccccccHHHHHHHHHHHHHHHHcCCCChhhccCcceEEeecCCCCccce
Confidence            88766788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHHHhhh
Q 013218          375 APLLNLPEVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPELLLL  444 (447)
Q Consensus       375 ~pii~~pq~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~~ll~  444 (447)
                      +|++||||+|||++|++.++|++ +||++++|++|+|||+||||++||+++++||++|+++||||+.|||
T Consensus       174 tpii~~pq~ail~vG~i~~~pv~-~dg~i~~r~~m~lslt~DHRviDGa~aa~Fl~~l~~~lE~P~~lll  242 (242)
T d1b5sa_         174 TPVINHPEVAILGIGRIAEKPIV-RDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM  242 (242)
T ss_dssp             CCCCCTTCCEEEEECCCEEEEEE-CSSSEEEEEEEEEEEEECTTTSCSHHHHHHHHHHHHHHHCGGGTTC
T ss_pred             ecccccccceEEeccceEEEEEE-ECCeEEEEEEEEEEEEEEcchhChHHHHHHHHHHHHHHhCHHHHhC
Confidence            99999999999999999999999 5899999999999999999999999999999999999999999986

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-41  Score=314.83  Aligned_cols=202  Identities=15%  Similarity=0.141  Sum_probs=175.9

Q ss_pred             ceecCchH-HHHHHHHHHHhcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEc
Q 013218          217 KTVPLRGF-QRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFN  295 (447)
Q Consensus       217 ~~~~~s~~-rk~ia~~m~~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~  295 (447)
                      +.+.++.- ||..-... ++...|||+++.++|+|+|++++|+.         ++||+++++||+++||+++|+||++|.
T Consensus         5 k~ID~~~W~R~~~f~~f-~~~~~P~f~it~~vDvT~l~~~~K~~---------~~sf~~~~~~av~~Al~~~P~~n~~~~   74 (214)
T d1q23a_           5 TTVDISQWHRKEHFEAF-QSVAQCTYNQTVQLDITAFLKTVKKN---------KHKFYPAFIHILARLMNAHPEFRMAMK   74 (214)
T ss_dssp             EECCGGGCTTHHHHHHH-TTTTCEEEEEEEEEECHHHHHHHHHT---------TCCHHHHHHHHHHHHHTTCGGGSEEEE
T ss_pred             eEeccccCcCHHHHHHH-hCCCCCeEEEEEEEcHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHhChHhheEEc
Confidence            34455552 44333322 23479999999999999999999874         799999999999999999999999998


Q ss_pred             cCCcEEEEcccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCC-CCCCCCCCCeEEEEecCCCCCccc
Q 013218          296 EESLEVILKGSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNE-LNPADNSGGTITLSNIGAIGGKFG  374 (447)
Q Consensus       296 ~~~~~i~~~~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~-l~~~~~~~gtftISnlg~~G~~~~  374 (447)
                      ++  ++++|+.+|+|+||++++|+++|++++++++++.+|++++.+++.++++++ |.+++++++||+|||+||+|.+.+
T Consensus        75 ~~--~i~~~~~i~i~iav~~~~gl~v~~i~~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~~~~~~tftiSnlg~~~ft~~  152 (214)
T d1q23a_          75 DG--ELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSF  152 (214)
T ss_dssp             TT--EEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTCCCSEE
T ss_pred             CC--ceeEcCccCeEEEEEcCCCeEEeEEecCchhhHHHHHHHHHHHHHHHHhCCCCCCccccCCEEEEEcCCCccccCc
Confidence            65  899999999999999999999999999999999999999999999998865 889999999999999999998887


Q ss_pred             ccccCCC---ceeEEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCH
Q 013218          375 APLLNLP---EVAIIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENP  439 (447)
Q Consensus       375 ~pii~~p---q~ail~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P  439 (447)
                      ++.++.+   .++++++|++.++     +|    |.+|||||++|||++||+|+|+||++|+++||+.
T Consensus       153 ~~~~~~~~~~~vpii~~Gk~~~~-----~~----r~~mplsls~dHrvvDG~~~a~Fl~~lq~~le~~  211 (214)
T d1q23a_         153 DLNVANMDNFFAPVFTMGKYYTQ-----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW  211 (214)
T ss_dssp             EEEESCCTTCCSCEEEECCCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCccceeeEEEecceEEE-----CC----EEEEEEEEEecccccchHHHHHHHHHHHHHHhhc
Confidence            6665554   4679999998764     66    7799999999999999999999999999999863

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-40  Score=308.65  Aligned_cols=192  Identities=16%  Similarity=0.173  Sum_probs=165.3

Q ss_pred             HHHHHHHHHHhcCcceEEEEeeeechHHHHHHHHhcccCCCCCCccchHHHHHHHHHHHHhcCcccceEEccCCcEEEEc
Q 013218          225 QRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILK  304 (447)
Q Consensus       225 rk~ia~~m~~s~~iP~~~~~~~vDvt~l~~~~k~~~~~~~~~g~~~s~~~~~vkAv~~al~~~P~ln~~~~~~~~~i~~~  304 (447)
                      ||..-...+ ..+.|||+++.++|||+|++++|+.         ++||+++++||+++||++||+||++|.++  ++++|
T Consensus        13 Rk~~f~~f~-~~~~P~~~~t~~vDvT~l~~~~K~~---------~~sf~~~~~~a~~~Al~~~P~~n~~~~~~--~i~~~   80 (213)
T d3claa_          13 RREHFEFYR-HRLPCGFSLTSKIDITTLKKSLDDS---------AYKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVW   80 (213)
T ss_dssp             THHHHHHHH-HTSCCEEEEEEEEECHHHHHHHHTS---------SCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEE
T ss_pred             cHHHHHHHh-CCCCCEEEEEEEEeHHHHHHHHHHc---------CCCeeHHHHHHHHHHHHhChHhhhEeccC--eEEEe
Confidence            454444432 3478999999999999999999873         79999999999999999999999999865  89999


Q ss_pred             ccceEEeEEEcCCCeEeeeeeccCCCCHHHHHHHHHHHHHHhhcCC-CCCCCCCC-CeEEEEecCCCCCcccccccCCCc
Q 013218          305 GSHNIGIAMATQHGLAVPNIKNVQSLSILEITKELSRLQQLAKDNE-LNPADNSG-GTITLSNIGAIGGKFGAPLLNLPE  382 (447)
Q Consensus       305 ~~v~igiav~~~~Gl~~pvI~~a~~~sl~~i~~~~~~l~~~ar~g~-l~~~~~~~-gtftISnlg~~G~~~~~pii~~pq  382 (447)
                      +++|+|+||++++||++|+|+.++++++.+|+++++++++++|+++ +.+++..+ ++|++|++|   |..|++++++++
T Consensus        81 ~~i~~~~aV~~~~gl~vp~i~~~~~~~l~~f~~~~~~~~~~ar~~~~~~~~~~~~~~~~~is~l~---~~~Ft~i~~~~~  157 (213)
T d3claa_          81 DSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALP---WVNFDSFNLNVA  157 (213)
T ss_dssp             SCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEET---TCCCSCCCCCCS
T ss_pred             cccceEEEEEcCCCeEEeeEecCCCCCHHHHHHHHHHHHHHHHhCCCCCccccCCCcEEEeeccC---ceEeecccCCcc
Confidence            9999999999999999999999999999999999999999999976 55555443 355555555   557888888876


Q ss_pred             ee------EEEecceEEeeEEcCCCceeeEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHH
Q 013218          383 VA------IIAMGRIEKVPRLSDDGNVYPSPIMTVNIGADHRVLDGATVAKFCNEWKQLIENPE  440 (447)
Q Consensus       383 ~a------il~vG~i~~~p~~~~dG~i~~r~~m~lslt~DHRvvDG~~aa~Fl~~l~~~Le~P~  440 (447)
                      ..      ++.+|++.++     +|    |.+|||||+||||++||+|+|+||++||++||+|.
T Consensus       158 ~~~~~~~Pii~~Gk~~~~-----~~----r~~m~lsls~dHrviDG~~aa~Fl~~lk~~le~p~  212 (213)
T d3claa_         158 NFTDYFAPIITMAKYQQE-----GD----RLLLPLSVQVHHAVCDGFHVARFINRLQELCNSKL  212 (213)
T ss_dssp             CCTTCCSCEEEEECCEEE-----TT----EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTSCC
T ss_pred             cCccccccEEecCccEEE-----CC----EEEEEEEEEecccccccHHHHHHHHHHHHHHhCcC
Confidence            55      8888887763     66    78999999999999999999999999999999995

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.5e-22  Score=162.58  Aligned_cols=82  Identities=24%  Similarity=0.357  Sum_probs=76.6

Q ss_pred             CceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCC-eeecccEEEEEec
Q 013218           21 SGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVV   99 (447)
Q Consensus        21 ~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~-~v~~G~~l~~i~~   99 (447)
                      +.-++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++|+.|..
T Consensus         3 p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~   82 (102)
T d1y8ob1           3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE   82 (102)
T ss_dssp             CSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEES
T ss_pred             CCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEec
Confidence            334889999999999999999999999999999999999999999999999999999999999997 5999999999975


Q ss_pred             CCC
Q 013218          100 GDS  102 (447)
Q Consensus       100 ~~~  102 (447)
                      .++
T Consensus        83 ~~~   85 (102)
T d1y8ob1          83 KEA   85 (102)
T ss_dssp             SGG
T ss_pred             CCc
Confidence            543

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.6e-22  Score=157.82  Aligned_cols=83  Identities=39%  Similarity=0.709  Sum_probs=78.9

Q ss_pred             CCceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           20 ASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        20 ~~~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      ++++++|+||+||+++++|+|++|++++||.|++||+||+|||||+.++|+||++|+|.++++++|+.|++|++|+.|+.
T Consensus         1 M~~~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~   80 (87)
T d1k8ma_           1 MGQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET   80 (87)
T ss_dssp             CCCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred             CCccEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCC
Q 013218          100 GDS  102 (447)
Q Consensus       100 ~~~  102 (447)
                      +..
T Consensus        81 ~~~   83 (87)
T d1k8ma_          81 EAL   83 (87)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            543

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.86  E-value=3.1e-22  Score=156.12  Aligned_cols=77  Identities=26%  Similarity=0.482  Sum_probs=74.9

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ++|+||+||++|++|+|.+|++++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|+.|+..
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999764

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.84  E-value=1.8e-22  Score=157.72  Aligned_cols=77  Identities=48%  Similarity=0.782  Sum_probs=74.2

Q ss_pred             EEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecC
Q 013218           24 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG  100 (447)
Q Consensus        24 ~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~  100 (447)
                      ++|+||+||+++++|+|++|++++||.|++||+||+|||||++++|+||.+|+|.++++++||.|++|++|+.|+.+
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~   78 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP   78 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCS
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999754

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.7e-22  Score=157.76  Aligned_cols=77  Identities=23%  Similarity=0.407  Sum_probs=74.7

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      .++|+||+||++|.+|+|++|++++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus         2 ~iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_           2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             CeEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999974

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.80  E-value=1.1e-20  Score=148.13  Aligned_cols=79  Identities=19%  Similarity=0.341  Sum_probs=75.1

Q ss_pred             ceEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           22 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      .+++|+||+||+ +.+++|++|++++||.|++||+||+|||||++++++||.+|+|.++++++|+.|++|++|+.++.++
T Consensus         1 aiiei~~P~lg~-~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~g   79 (81)
T d1gjxa_           1 ALVELKVPDIGG-HENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEG   79 (81)
T ss_dssp             CCEECCCCCCSS-CSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSC
T ss_pred             CcEEEECCCCCC-CcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence            368999999995 8999999999999999999999999999999999999999999999999999999999999998644

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2e-19  Score=140.62  Aligned_cols=77  Identities=30%  Similarity=0.475  Sum_probs=73.1

Q ss_pred             eEEEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           23 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        23 ~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      +.+|+||++|+  ++++|++|++++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|.+|++|+.|+.++
T Consensus         2 ~~ei~~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~eg   78 (80)
T d1qjoa_           2 VKEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             EEEECCCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             CeEEECCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            57899999997  489999999999999999999999999999999999999999999999999999999999998644

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.78  E-value=5.2e-19  Score=137.83  Aligned_cols=75  Identities=28%  Similarity=0.406  Sum_probs=71.3

Q ss_pred             EEecCCCCCCCceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCCC
Q 013218           25 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS  102 (447)
Q Consensus        25 ~~~~p~~~~~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~~  102 (447)
                      .|+||++|+   +|+|++|++++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|.+|++|+.|++.+.
T Consensus         3 ~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~~   77 (79)
T d1iyua_           3 IIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAG   77 (79)
T ss_dssp             EEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCCS
T ss_pred             EEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecCcc
Confidence            489999985   899999999999999999999999999999999999999999999999999999999999987553

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.59  E-value=2.4e-15  Score=116.21  Aligned_cols=60  Identities=30%  Similarity=0.416  Sum_probs=59.2

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      |+|.+|+|++||.|++||+|+++|+||+.++|+||++|+|.++++++|+.|..|++|+.|
T Consensus        17 G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_          17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             cEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence            899999999999999999999999999999999999999999999999999999999987

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.54  E-value=1.8e-15  Score=101.68  Aligned_cols=41  Identities=44%  Similarity=0.702  Sum_probs=38.8

Q ss_pred             CccCCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHH
Q 013218          135 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV  175 (447)
Q Consensus       135 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~  175 (447)
                      ++++||+||+||+|+||||+.|+|||++|||+++||++|++
T Consensus         1 rv~asP~arkla~e~gidl~~i~GTG~~GRItk~DV~~~i~   41 (42)
T d1w85i_           1 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   41 (42)
T ss_dssp             CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             CcccCHHHHHHHHHcCCCHHHCccCCCCCcEeHHHHHHHhC
Confidence            36899999999999999999999999999999999999983

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=6.1e-15  Score=97.61  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHHhCCCCCCccCCCCCCceehHHHHHHHH
Q 013218          138 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAV  175 (447)
Q Consensus       138 asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~  175 (447)
                      .||+||+||+|+|||++.|+|||++|||+++||++|+.
T Consensus         1 iSP~arkla~e~gidl~~i~GtG~~GRI~k~Dv~~~i~   38 (39)
T d2cyua1           1 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA   38 (39)
T ss_dssp             CCCTHHHHHHHHTCCGGGSCCCSSSSCCCHHHHHHHSC
T ss_pred             CCHHHHHHHHHcCCCHHHCcCCCCCCcEeHHHHHHHHc
Confidence            48999999999999999999999999999999999973

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=9e-14  Score=107.70  Aligned_cols=58  Identities=26%  Similarity=0.396  Sum_probs=55.8

Q ss_pred             EEEEcCCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEe
Q 013218           41 LKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV   98 (447)
Q Consensus        41 ~~w~v~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~   98 (447)
                      .+++|++||.|++||+||.||+||+.++|+||.+|+|.++++++|+.|..|++|+.|+
T Consensus        23 ~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            3688999999999999999999999999999999999999999999999999999885

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=0.00034  Score=57.52  Aligned_cols=59  Identities=17%  Similarity=0.201  Sum_probs=46.3

Q ss_pred             ceEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218           22 GIVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL   81 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~   81 (447)
                      .+..+-|-+++.. .-|.|+.+.. ++|+.|++|+.++.||+.|+..+|.||.+|+|.++.
T Consensus        20 ~~~~iGit~~a~~-~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN   79 (127)
T d1onla_          20 DTVLVGITDYAQD-ALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVN   79 (127)
T ss_dssp             TEEEEEECHHHHH-HHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEEC
T ss_pred             CEEEEEeCHHHHh-hccccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEh
Confidence            4555555544432 3355666654 899999999999999999999999999999999885

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=97.01  E-value=0.00042  Score=57.30  Aligned_cols=59  Identities=19%  Similarity=0.225  Sum_probs=45.4

Q ss_pred             ceEEEecCCCCCCCceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEeCCCCeEEEEEe
Q 013218           22 GIVDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL   81 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~v-~~Gd~V~~g~~l~~iet~K~~~~i~ap~~G~i~~~~   81 (447)
                      .+..+-|-+++.. .-|.|+.+.. ++|+.|++|+.++.||+.|+..+|.||.+|+|.++.
T Consensus        21 ~~~~vGit~~a~~-~lG~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN   80 (131)
T d1hpca_          21 SVATIGITDHAQD-HLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN   80 (131)
T ss_dssp             TEEEEEECHHHHH-HHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred             CEEEEEECHHHHh-hhhhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeeh
Confidence            4445544444331 2355666654 799999999999999999999999999999998874

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=96.58  E-value=0.0011  Score=49.34  Aligned_cols=36  Identities=33%  Similarity=0.450  Sum_probs=33.1

Q ss_pred             eeEEeCCCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           66 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        66 ~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      .-.|+||..|+|.++++++||.|..||+|+.++...
T Consensus         8 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K   43 (77)
T d1dcza_           8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMK   43 (77)
T ss_dssp             SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred             CCEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEccC
Confidence            347999999999999999999999999999999754

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.54  E-value=0.00034  Score=62.72  Aligned_cols=60  Identities=20%  Similarity=0.312  Sum_probs=50.9

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCce--------------------------------------------------
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------   65 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~--------------------------------------------------   65 (447)
                      ..|.|.+|+|++||.|++||+|++|++...                                                  
T Consensus        22 v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~a~~~l~  101 (237)
T d1vf7a_          22 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE  101 (237)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcchhHHHHH
Confidence            469999999999999999999999975443                                                  


Q ss_pred             -------eeEEeCCCCeEEEEEeeCCCCeeecccEEE
Q 013218           66 -------TIEITSRYKGKVAQLLHAPGNIVKVGETLL   95 (447)
Q Consensus        66 -------~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~   95 (447)
                             ...+.||++|+|.+..+.+|+.+..|....
T Consensus       102 ~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~~  138 (237)
T d1vf7a_         102 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANA  138 (237)
T ss_dssp             HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSC
T ss_pred             HHhhhhcccccccchhceeeeEEeccCcEEcCCccee
Confidence                   112899999999999999999988876543

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.0088  Score=44.65  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=24.6

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEE
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQ   61 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~ie   61 (447)
                      .+|+|.+|++++||.|+.||+|++||
T Consensus        55 ~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          55 KSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            57999999999999999999999986

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.013  Score=44.49  Aligned_cols=31  Identities=13%  Similarity=0.122  Sum_probs=28.1

Q ss_pred             CceEEEEEEEcCCCCeecCCCeEEEEEeCce
Q 013218           35 IAECELLKWFVKEGDEIEEFQPLCAVQSDKA   65 (447)
Q Consensus        35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K~   65 (447)
                      -.+|+|.++++++||.|+.|++|+.|+++..
T Consensus        53 ~~~G~I~~i~v~~G~~v~~G~~l~~i~~~~~   83 (87)
T d1k8ma_          53 RYDGVIKKLYYNLDDIAYVGKPLVDIETEAL   83 (87)
T ss_dssp             SSCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred             CCCEEEEEEEeCCCCEECCCCEEEEEEcCCc
Confidence            3679999999999999999999999998754

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.76  E-value=0.0091  Score=44.43  Aligned_cols=29  Identities=17%  Similarity=0.173  Sum_probs=26.6

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDK   64 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K   64 (447)
                      ..|+|.+|++++||.|+.||+|++||...
T Consensus        48 ~~G~v~~i~v~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_          48 KAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             SSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             cccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence            46999999999999999999999999654

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.0083  Score=44.77  Aligned_cols=29  Identities=10%  Similarity=0.070  Sum_probs=26.7

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQSDK   64 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet~K   64 (447)
                      .+|+|.++++++||.|+.|++|+.||++-
T Consensus        50 ~~G~v~~i~v~~G~~V~~G~~l~~ie~eg   78 (80)
T d1qjoa_          50 FAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             SCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             eeEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            57999999999999999999999999753

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.61  E-value=0.014  Score=51.65  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=35.3

Q ss_pred             EEEEeCceeeEEeCCCCeEEEEEeeCCCCeeecccEEEEEec
Q 013218           58 CAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        58 ~~iet~K~~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i~~   99 (447)
                      +.|+..+. .+|.|+.+|+|.+++|++|+.|..||+|+.|+.
T Consensus         8 G~i~a~~~-~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~   48 (237)
T d1vf7a_           8 GRTNAFRI-AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP   48 (237)
T ss_dssp             EECEESCE-EEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred             EEEEeeEE-EEEEeecCEEEEEEECCCcCEECCCCEEEEEeh
Confidence            45665443 579999999999999999999999999999964

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.86  E-value=0.02  Score=42.49  Aligned_cols=27  Identities=19%  Similarity=0.181  Sum_probs=25.3

Q ss_pred             ceEEEEEEEcCCCCeecCCCeEEEEEe
Q 013218           36 AECELLKWFVKEGDEIEEFQPLCAVQS   62 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~g~~l~~iet   62 (447)
                      .+|+|.++++++||.|..|++|++|+.
T Consensus        51 ~~G~v~~i~v~~Gd~v~~G~~l~~i~~   77 (79)
T d1ghja_          51 ADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             SCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             eeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence            579999999999999999999999974

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.79  E-value=0.0099  Score=44.42  Aligned_cols=29  Identities=24%  Similarity=0.195  Sum_probs=26.3

Q ss_pred             CceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 013218           35 IAECELLKWFVKEGDEIEEFQPLCAVQSD   63 (447)
Q Consensus        35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet~   63 (447)
                      ...|+|.+|++++||.|+.|++|+++|+.
T Consensus        50 ~~~G~i~~i~v~~G~~v~~G~~l~~ie~~   78 (81)
T d1gjxa_          50 EVAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             CCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             eeeEEEEEEEeCCCCEECCCCEEEEEecc
Confidence            35699999999999999999999999864

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.65  E-value=0.052  Score=40.19  Aligned_cols=30  Identities=17%  Similarity=0.326  Sum_probs=27.1

Q ss_pred             CCCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           72 RYKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        72 p~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      -.+|+|.++++++||.|..||+|+.++...
T Consensus        13 ~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K   42 (80)
T d1laba_          13 IHEGEIVKWFVKPGDEVNEDDVLCEVQNDK   42 (80)
T ss_dssp             TCSEEEEECCCSSCCEECSSCCCEEEECSS
T ss_pred             ceeEEEEEEEeCCCCEEeeCcCEEEEEccc
Confidence            357999999999999999999999999754

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.097  Score=40.55  Aligned_cols=29  Identities=17%  Similarity=0.253  Sum_probs=26.7

Q ss_pred             CCeEEEEEeeCCCCeeecccEEEEEecCC
Q 013218           73 YKGKVAQLLHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        73 ~~G~i~~~~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      ..|+|.+|++++||.|..|++|+.++++.
T Consensus        18 ~eg~i~~w~v~~Gd~V~~gd~l~~vETdK   46 (102)
T d1y8ob1          18 TMGTVQRWEKKVGEKLSEGDLLAEIETDK   46 (102)
T ss_dssp             SEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred             cEEEEEEEEeCCCCEEecCccEEEEEcCc
Confidence            57999999999999999999999999754

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=90.18  E-value=0.017  Score=43.05  Aligned_cols=28  Identities=21%  Similarity=0.137  Sum_probs=25.5

Q ss_pred             CceEEEEEEEcCCCCeecCCCeEEEEEe
Q 013218           35 IAECELLKWFVKEGDEIEEFQPLCAVQS   62 (447)
Q Consensus        35 ~~~g~i~~w~v~~Gd~V~~g~~l~~iet   62 (447)
                      -.+|+|.++++++||.|+.|++|+.||.
T Consensus        51 ~~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_          51 SADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             cCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            3679999999999999999999999973

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=88.01  E-value=0.4  Score=39.54  Aligned_cols=60  Identities=15%  Similarity=0.266  Sum_probs=45.4

Q ss_pred             ceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218           36 AECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------   80 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V~~----g~~l~~iet~K~~~~i~ap~~G~i~~~-------------------------------   80 (447)
                      -+|+++.+ -+.-|.|=.    |+-++.+=++   ..|.||++|+|..+                               
T Consensus         8 ~~G~vi~L-~~v~D~vFs~~~mG~GvAI~P~~---~~v~AP~dG~V~~v~~T~HAigi~t~~G~eiLIHiGidTV~L~G~   83 (150)
T d2f3ga_           8 LSGEIVNI-EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE   83 (150)
T ss_dssp             SSEEEECG-GGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred             cCceEEEc-ccCCChHHhcCCccCeEEEEeCC---CeEEeecCEEEEEECCCCCEEEEEeCCceEEEEEEccchhhcCCc
Confidence            35666664 455555533    7888877665   37889999999877                               


Q ss_pred             ----eeCCCCeeecccEEEEEec
Q 013218           81 ----LHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        81 ----~v~~g~~v~~G~~l~~i~~   99 (447)
                          ++++||.|..||+|+.+.-
T Consensus        84 gF~~~v~~Gd~V~~G~~L~~~D~  106 (150)
T d2f3ga_          84 GFKRIAEEGQRVKVGDTVIEFDL  106 (150)
T ss_dssp             TEEECSCTTCEECTTCEEEEECH
T ss_pred             ceEEEecCCCEECCCCEEEEEcH
Confidence                7889999999999999864

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=87.10  E-value=0.47  Score=39.44  Aligned_cols=60  Identities=18%  Similarity=0.252  Sum_probs=49.2

Q ss_pred             ceEEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEeCCCCeEEEEE-------------------------------
Q 013218           36 AECELLKWFVKEGDEI----EEFQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------   80 (447)
Q Consensus        36 ~~g~i~~w~v~~Gd~V----~~g~~l~~iet~K~~~~i~ap~~G~i~~~-------------------------------   80 (447)
                      -.|+++.+ -++-|.|    --|+-++..=++   ..|-||++|+|..+                               
T Consensus        16 ~~G~vi~L-~~V~D~vFs~~~~G~G~aI~P~~---~~v~AP~~G~I~~i~~T~HAigi~t~~G~evLiHiGiDTV~L~G~   91 (158)
T d1gpra_          16 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE   91 (158)
T ss_dssp             SSEEEEEG-GGSSSHHHHTTSSCEEEEEEESS---CEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSCGGGTTT
T ss_pred             CCcEEEEh-hhCCChHhccCCccceEEEEEcC---CEEEEeeCeEEEEEcCCCCEEEEEeCCCeEEEEEEeecccccCCc
Confidence            46888884 5777776    348888888765   46999999999888                               


Q ss_pred             ----eeCCCCeeecccEEEEEec
Q 013218           81 ----LHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        81 ----~v~~g~~v~~G~~l~~i~~   99 (447)
                          ++++||.|..||+|+.+..
T Consensus        92 gF~~~v~~Gd~Vk~G~~L~~~D~  114 (158)
T d1gpra_          92 GFTSFVSEGDRVEPGQKLLEVDL  114 (158)
T ss_dssp             TEEECCCTTCEECTTCEEEEECH
T ss_pred             ceEEEEcCCCEEcCCCEEEEeCH
Confidence                7889999999999999874

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=85.86  E-value=0.5  Score=39.09  Aligned_cols=68  Identities=12%  Similarity=0.149  Sum_probs=52.0

Q ss_pred             ceEEEecCCCCCCCceEEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEeCCCCeEEEEE-----------------
Q 013218           22 GIVDVPLAQTGEGIAECELLKWFVKEGDEI----EEFQPLCAVQSDKATIEITSRYKGKVAQL-----------------   80 (447)
Q Consensus        22 ~~~~~~~p~~~~~~~~g~i~~w~v~~Gd~V----~~g~~l~~iet~K~~~~i~ap~~G~i~~~-----------------   80 (447)
                      +..++.-|      -+|+++.+ -++-|.|    --|+-++..=++   ..|.||++|+|..+                 
T Consensus         6 K~~~i~aP------~~G~vi~l-~~v~D~vFs~k~~G~G~aI~P~~---~~v~AP~dG~I~~i~~T~HAigi~t~~G~ei   75 (154)
T d2gpra_           6 KNLKVLAP------CDGTIITL-DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEI   75 (154)
T ss_dssp             CCEEEECS------SSEEEECG-GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEE
T ss_pred             cceEEEec------CCceEEEc-ccCCChhhccCCCcCeEEEEecC---CEEEEecCeEEEEECCCCcEEEEEeCCCCEE
Confidence            34556555      46888774 5666666    447888888765   46889999999877                 


Q ss_pred             ------------------eeCCCCeeecccEEEEEec
Q 013218           81 ------------------LHAPGNIVKVGETLLKLVV   99 (447)
Q Consensus        81 ------------------~v~~g~~v~~G~~l~~i~~   99 (447)
                                        ++++||.|..||+|+.+.-
T Consensus        76 LIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~  112 (154)
T d2gpra_          76 LLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             EEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred             EEEEcccccccCCceeEEEecCCCEEcCCCEEEEEcH
Confidence                              7889999999999999864

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=85.63  E-value=0.2  Score=41.60  Aligned_cols=58  Identities=21%  Similarity=0.174  Sum_probs=38.1

Q ss_pred             eEEEEEEEcCCCCeecCCCeEEEEEeCce---------eeEEeCCCCeEEEEEeeCCCCeeecccEEEEE
Q 013218           37 ECELLKWFVKEGDEIEEFQPLCAVQSDKA---------TIEITSRYKGKVAQLLHAPGNIVKVGETLLKL   97 (447)
Q Consensus        37 ~g~i~~w~v~~Gd~V~~g~~l~~iet~K~---------~~~i~ap~~G~i~~~~v~~g~~v~~G~~l~~i   97 (447)
                      +|+--+++|++||+|++||+|+++.-++.         -+-+.-....   .+.+.....|..|++|+.+
T Consensus        87 ~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~---~~~~~~~g~V~~Gd~i~~i  153 (154)
T d2gpra_          87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGK---TLEIVKMGEVKQGDVVAIL  153 (154)
T ss_dssp             TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSC---CCSCBCCEEECTTCEEEEE
T ss_pred             CCceeEEEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCCc---eEEecccCcCcCCCEEEEe
Confidence            56678999999999999999999964321         1112222221   2223344468899998876

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.77  E-value=1.1  Score=34.28  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             ceeeEEeCCCCeEEEEE-------------------------------eeCCCCeeecccEEEEEecCC
Q 013218           64 KATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGD  101 (447)
Q Consensus        64 K~~~~i~ap~~G~i~~~-------------------------------~v~~g~~v~~G~~l~~i~~~~  101 (447)
                      |-..+|.|+.+|+|..+                               +.+.||.|..|++|+.|-...
T Consensus         3 ~~~~~v~A~~~G~v~~id~~~iG~~~~~LGaGR~~~~D~ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3           3 AYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             SEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred             CeEEEEECCCCEEEEEEeHHHHHHHHHHhCCCcccccCccCcccceEEeccCCCEEcCCCeEEEEEcCC
Confidence            34568899999999888                               677999999999999998643

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.54  E-value=0.35  Score=37.23  Aligned_cols=31  Identities=19%  Similarity=0.237  Sum_probs=26.2

Q ss_pred             CCceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 013218           34 GIAECELLKWFVKEGDEIEEFQPLCAVQSDK   64 (447)
Q Consensus        34 ~~~~g~i~~w~v~~Gd~V~~g~~l~~iet~K   64 (447)
                      .++.+.=..++++.||.|++||+|++|=+++
T Consensus        41 ~ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3          41 VIDLAVGIVLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             CCCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred             ccCcccceEEeccCCCEEcCCCeEEEEEcCC
Confidence            4555666899999999999999999997665

>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.09  E-value=0.65  Score=36.32  Aligned_cols=24  Identities=13%  Similarity=0.065  Sum_probs=21.7

Q ss_pred             EEEEEEEcCCCCeecCCCeEEEEE
Q 013218           38 CELLKWFVKEGDEIEEFQPLCAVQ   61 (447)
Q Consensus        38 g~i~~w~v~~Gd~V~~g~~l~~ie   61 (447)
                      +.-..|+++.|+.|++||.|++|+
T Consensus        70 ~i~~~~~~~DG~~v~~G~~I~~i~   93 (115)
T d1qpoa2          70 GYRVLDRVEDGARVPPGEALMTLE   93 (115)
T ss_dssp             SEEEEEECCTTCEECTTCEEEEEE
T ss_pred             ccceeeecCCCCEEecceeEEEEe
Confidence            455789999999999999999997