Citrus Sinensis ID: 013226
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 447 | 2.2.26 [Sep-21-2011] | |||||||
| Q8NBZ7 | 420 | UDP-glucuronic acid decar | yes | no | 0.684 | 0.728 | 0.630 | 1e-115 | |
| Q91XL3 | 420 | UDP-glucuronic acid decar | yes | no | 0.684 | 0.728 | 0.630 | 1e-115 | |
| Q5R885 | 420 | UDP-glucuronic acid decar | yes | no | 0.684 | 0.728 | 0.630 | 1e-115 | |
| Q5PQX0 | 420 | UDP-glucuronic acid decar | yes | no | 0.684 | 0.728 | 0.630 | 1e-115 | |
| Q6GMI9 | 418 | UDP-glucuronic acid decar | yes | no | 0.675 | 0.722 | 0.629 | 1e-112 | |
| Q6DF08 | 421 | UDP-glucuronic acid decar | yes | no | 0.684 | 0.726 | 0.617 | 1e-112 | |
| O34886 | 316 | Uncharacterized UDP-gluco | yes | no | 0.655 | 0.927 | 0.314 | 4e-31 | |
| Q57664 | 305 | Putative UDP-glucose 4-ep | yes | no | 0.635 | 0.931 | 0.330 | 9e-31 | |
| Q9ZAE8 | 320 | dTDP-glucose 4,6-dehydrat | yes | no | 0.659 | 0.921 | 0.326 | 9e-29 | |
| Q58455 | 326 | Uncharacterized protein M | no | no | 0.642 | 0.880 | 0.310 | 2e-28 |
| >sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Homo sapiens (taxid: 9606) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5 |
| >sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1065), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Pongo abelii (taxid: 9601) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/302 (62%), Positives = 232/302 (76%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 88 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 147
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 148 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 207
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+G RM ++
Sbjct: 208 EVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMN 267
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ E LTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 268 DGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEH 327
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F P +DDP +R+PDI KAK LLGWEP V L +GL +
Sbjct: 328 TILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQ 387
Query: 417 DF 418
F
Sbjct: 388 YF 389
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). Essential during embryogenesis for craniofacial development. Danio rerio (taxid: 7955) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/306 (61%), Positives = 234/306 (76%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 91 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 150
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 151 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 210
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 211 EVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 270
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ E LTVYG G+QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 271 DGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEH 330
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
++++ A ++++++ I F +DDP +RKPDI KAK LLGWEP V L +GL +
Sbjct: 331 SIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIH 390
Query: 417 DFRHRI 422
FR +
Sbjct: 391 YFRKEL 396
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Xenopus tropicalis (taxid: 8364) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis (strain 168) GN=ytcB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 157/315 (49%), Gaps = 22/315 (6%)
Query: 116 LRILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNY-----FTGKKDNLIHHFGNPRFELIR 169
++ILVTG AGF+GSHL + L+ D+ +VI +D++ F+ K NL + RF I+
Sbjct: 1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIK 60
Query: 170 HDVVEP----ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--R 223
+++ +L VD I+HLA N + + L L A R +
Sbjct: 61 ENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQT 120
Query: 224 FLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIA 283
F+ STS VYG+ T ++P GV K T E L Y + GI I
Sbjct: 121 FVFASTSSVYGEKQGKVSENTSLSPLSPYGVT------KLTGEKLCHVYKQSFGIPIVIL 174
Query: 284 RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
R F YGPR D + Q L+++PLT++GDG+Q+R F ++SD V+G+ ++
Sbjct: 175 RFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKP 232
Query: 344 HV--GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGW 401
H+ N+G ++L++ ++++I R A + F +P DI+KAKQLL +
Sbjct: 233 HLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADISKAKQLLHY 292
Query: 402 EPRVTLRKGLPLMVA 416
+P +L+ GL +A
Sbjct: 293 DPATSLKDGLTNEIA 307
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (339), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 162/309 (52%), Gaps = 25/309 (8%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL 177
ILVTGGAGF+GSH+VD+L++ VI++DN TG K+N+ NP+ E + D+ + L
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDL 56
Query: 178 LE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR--VGARFLLTST 229
E V+ + H A + + NPV NV+GT+N+L + ++ + +S
Sbjct: 57 DEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSG 116
Query: 230 SEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
VYG+P P E + PI S Y K E Y+R GIE I R N Y
Sbjct: 117 GAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVY 171
Query: 290 GPRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG-LIRLMEGDHVGP 347
G R + V+S F+ + L+ + ++GDG QTR F +V D+ + L+ L + +
Sbjct: 172 GERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALNWKNEI-- 229
Query: 348 FNLGNPGEFTMLELAEVVQ-EIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVT 406
N+G E ++ EL ++++ EI R I +P E + ++ DI KA+ LGW+P +
Sbjct: 230 VNIGTGKETSVNELFDIIKHEIGFRGEAIYDKP-REGEVYRIYLDIKKAES-LGWKPEID 287
Query: 407 LRKGLPLMV 415
L++G+ +V
Sbjct: 288 LKEGIKRVV 296
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 105/322 (32%), Positives = 154/322 (47%), Gaps = 27/322 (8%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGD--------SVIVVDNY-FTGKKDNLIHHFGNPRFE 166
++ILVTGGAGF+GSH V L+ GD V VVD + G NL +PRF
Sbjct: 1 MKILVTGGAGFIGSHFVTSLIS-GDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFS 59
Query: 167 LIRHDVVEPILLEVDQIYH--LACPASPVHYKFNPVKT---IKTNVVGTLNMLGLAKR-- 219
+R D+ + L+E H +A A+ H + V + + +N+VGT +L A R
Sbjct: 60 FVRGDICDEGLIEGLMARHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAALRHH 119
Query: 220 VGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIE 279
+G RFL ST EVYG W +P+ S Y K ++ L + YH+ G++
Sbjct: 120 IG-RFLHVSTDEVYGS-----IDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMD 173
Query: 280 ARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339
+ R N YGPR + +++ FV + L + VYGDG+ R + VSD GL
Sbjct: 174 VVVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALA 231
Query: 340 MEGDHVGP-FNLGNPGEFTMLELAEVVQEIIDRNA-RIEFRPNTEDDPHKRKPDITKAKQ 397
+ G +++G E T LEL E++ E A RI F + + + D +K
Sbjct: 232 LGAGRAGEVYHIGGGWEATNLELTEILLEACGAPASRISFVTDRKGHDRRYSLDYSKIAG 291
Query: 398 LLGWEPRVTLRKGLPLMVADFR 419
LG+ PRV G+ VA +R
Sbjct: 292 ELGYRPRVDFTDGIAETVAWYR 313
|
Probably involved in the biosynthesis of the acarviose moiety of the alpha-glucosidase inhibitor acarbose. Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction. Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) (taxid: 134676) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1055 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 162/319 (50%), Gaps = 32/319 (10%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVV-----DNYFT----GKKDNLIHHFGNPR 164
K ILVTG AGF+G HL LMD + + V+ +NY+ K++ ++ ++ N
Sbjct: 2 KYKNILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYT 61
Query: 165 FELIRH----DVVEPIL-LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR 219
F + D+VE + E+D I HL A + NP IK+N +GTLN+ A+R
Sbjct: 62 FIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARR 121
Query: 220 VG-ARFLLTSTSEVYGDPLQHPQAETYWGNVN-PIGVRSCYDEGKRTAETLTMDYHRGLG 277
+ + S+S VYG + P +E V+ PI S Y KR+ E + YH G
Sbjct: 122 FDIEKVVYASSSSVYGGNRKIPFSED--DRVDKPI---SLYASTKRSNELMAHVYHHLYG 176
Query: 278 IEARIARIFNTYG----PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 333
I+ R F YG P M F L + + VY G R F ++SD+V
Sbjct: 177 IKMIGLRFFTVYGEYGRPDMA------YFKFAKNILLGKEIEVYNYGNMERDFTYISDVV 230
Query: 334 EGLIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDI 392
+G++R ++ D FNLGN ++ E++++ +++ A+ +F P + D + D+
Sbjct: 231 DGILRAIKKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQDGDVLRTYADL 290
Query: 393 TKAKQLLGWEPRVTLRKGL 411
+K+++LLG++P+VT+ +GL
Sbjct: 291 SKSEKLLGYKPKVTIEEGL 309
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 447 | ||||||
| 225431735 | 429 | PREDICTED: UDP-glucuronic acid decarboxy | 0.944 | 0.983 | 0.774 | 0.0 | |
| 118481067 | 443 | unknown [Populus trichocarpa] | 0.950 | 0.959 | 0.75 | 0.0 | |
| 60932254 | 443 | UDP-glucuronic acid decarboxylase 2 [Pop | 0.950 | 0.959 | 0.75 | 0.0 | |
| 224131118 | 442 | predicted protein [Populus trichocarpa] | 0.948 | 0.959 | 0.752 | 0.0 | |
| 224064446 | 429 | predicted protein [Populus trichocarpa] | 0.930 | 0.969 | 0.749 | 0.0 | |
| 48093465 | 446 | putative UDP-glucuronate decarboxylase 3 | 0.903 | 0.905 | 0.780 | 0.0 | |
| 225437374 | 444 | PREDICTED: UDP-glucuronic acid decarboxy | 0.939 | 0.945 | 0.750 | 0.0 | |
| 297817618 | 445 | UDP-glucuronic acid decarboxylase 2 [Ara | 0.939 | 0.943 | 0.737 | 0.0 | |
| 356535177 | 427 | PREDICTED: UDP-glucuronic acid decarboxy | 0.939 | 0.983 | 0.748 | 0.0 | |
| 213950353 | 442 | UDP-glucuronic acid decarboxylase 2 [Gos | 0.930 | 0.941 | 0.75 | 0.0 |
| >gi|225431735|ref|XP_002269917.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/431 (77%), Positives = 367/431 (85%), Gaps = 9/431 (2%)
Query: 1 MGSHELIHRSQTSQTQDQIIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAISSL 60
MG EL HR +QT ++ + S + NP++YVLR QR++F FIGI+IS+L
Sbjct: 1 MGGGELFHRGHRTQTLP-LLRSSHTRYLSLYLTKLTNPIRYVLREQRILFFFIGISISTL 59
Query: 61 IFSKLPVRQHQIANPAPLTTSETTHLSRRRVLYEAAEVQHVNAGGKVPLGLQRKSLRILV 120
I + P HQI P L S++TH + Y A AGGKV LGL+RK+LRI+V
Sbjct: 60 ILNSFPPSHHQI--PPLLLRSDSTHSTHPVSYYHHA------AGGKVLLGLKRKALRIVV 111
Query: 121 TGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEV 180
TGGAGFVGSHLVDRL+ RGDSVIVVDN+FTG+K+NL+HHFGNP FELIRHDVVEPILLEV
Sbjct: 112 TGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENLMHHFGNPMFELIRHDVVEPILLEV 171
Query: 181 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHP 240
DQIYHLACPASPV+YKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHP
Sbjct: 172 DQIYHLACPASPVYYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHP 231
Query: 241 QAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRV 300
Q ETYWGNVNPIGVRSCYDEGKRTAETLTM YHRG GIE RIARIFNTYGPRMCIDDGRV
Sbjct: 232 QVETYWGNVNPIGVRSCYDEGKRTAETLTMAYHRGAGIEVRIARIFNTYGPRMCIDDGRV 291
Query: 301 VSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLE 360
VSNFVAQALRKEPLTVYGDGKQTRSFQ+VSDLVEGLIRLMEG+HVGPFNLGNPGEFTMLE
Sbjct: 292 VSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMEGEHVGPFNLGNPGEFTMLE 351
Query: 361 LAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
LA+VVQE ID NA+IEFRPNTEDDPHKRKPDI+KAKQLLGWEP V+LR GLPLMV+DFR
Sbjct: 352 LAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISKAKQLLGWEPSVSLRNGLPLMVSDFRQ 411
Query: 421 RIFGDQKEAGG 431
R+FGD+KE G
Sbjct: 412 RLFGDRKEVGA 422
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118481067|gb|ABK92487.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/440 (75%), Positives = 367/440 (83%), Gaps = 15/440 (3%)
Query: 1 MGSHELIHR--SQTSQTQDQIIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAIS 58
MGS ELI R +T D SP+P K + P++Y+L QRL+F+ +GIAI+
Sbjct: 1 MGSSELIFRGHDETQPASDAY-----SPKPPKPWLAVTRPIRYLLLEQRLVFILVGIAIA 55
Query: 59 SLIFSKLPVRQHQIA---NPAPLTTSETTH---LSRRRVLYEAAEV--QHVNAGGKVPLG 110
+L F+ LP +P P T S +H R YE V Q N+GGK+PLG
Sbjct: 56 TLFFTVLPSSSSSSPYEHDPIPNTFSHFSHELTTPMRYKYYEPLRVGLQSANSGGKIPLG 115
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRH 170
L+ KSLRI+VTGGAGFVGSHLVDRL+ RGDSVIVVDN+FTG+K+N++HH NPRFELIRH
Sbjct: 116 LKSKSLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHLKNPRFELIRH 175
Query: 171 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230
DVVEP+LLEVDQIYHLACPASPVHYK NPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS
Sbjct: 176 DVVEPLLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 235
Query: 231 EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
EVYGDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG G+E RIARIFNTYG
Sbjct: 236 EVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 295
Query: 291 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNL 350
PRMCIDDGRVVSNFVAQALRKEP+TVYGDGKQTRSFQFVSDLVEGL+RLMEG+HVGPFNL
Sbjct: 296 PRMCIDDGRVVSNFVAQALRKEPMTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNL 355
Query: 351 GNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKG 410
GNPGEFTMLELA+VVQE ID NARIEFRPNTEDDPHKRKPDITKAK LLGWEP+++LR+G
Sbjct: 356 GNPGEFTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDITKAKDLLGWEPKISLRQG 415
Query: 411 LPLMVADFRHRIFGDQKEAG 430
LP+MV+DFR R+FGD KE G
Sbjct: 416 LPMMVSDFRQRVFGDHKEEG 435
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|60932254|gb|AAX37335.1| UDP-glucuronic acid decarboxylase 2 [Populus tomentosa] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/440 (75%), Positives = 367/440 (83%), Gaps = 15/440 (3%)
Query: 1 MGSHELIHR--SQTSQTQDQIIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAIS 58
MGS ELI R +T D SP+P K + P++Y+L QRL+F+ +GIAI+
Sbjct: 1 MGSSELIFRGHDETQPASDAY-----SPKPPKPWLAVTRPIRYLLLEQRLVFILVGIAIA 55
Query: 59 SLIFSKLPVRQHQIA---NPAPLTTSETTH---LSRRRVLYEAAEV--QHVNAGGKVPLG 110
+L F+ LP +P P T S +H R YE V Q N+GGK+PLG
Sbjct: 56 TLFFTLLPSSSSSSPYEHDPIPNTFSHFSHELTAPMRYKYYEPLRVGFQSANSGGKIPLG 115
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRH 170
L+ KSLRI+VTGGAGFVGSHLVDRL+ RGDSVIVVDN+FTG+K+N++HHF NPRFELIRH
Sbjct: 116 LKSKSLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFKNPRFELIRH 175
Query: 171 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230
DVVEP+LLEVDQIYHLACPASPVHYK NPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS
Sbjct: 176 DVVEPLLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 235
Query: 231 EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
EVYGDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG G+E RIARIFNTYG
Sbjct: 236 EVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYG 295
Query: 291 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNL 350
PRMCIDDGRVVSNFVAQALRKEP+TVYGDGKQTRSFQFVSDLVEGL+RLMEG+HVGPFNL
Sbjct: 296 PRMCIDDGRVVSNFVAQALRKEPMTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNL 355
Query: 351 GNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKG 410
GNPGEFTMLELA+VVQE ID NARIEFRPNTEDDPHKRKPDITKAK LLGWEP+++L +G
Sbjct: 356 GNPGEFTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDITKAKDLLGWEPKISLHQG 415
Query: 411 LPLMVADFRHRIFGDQKEAG 430
LP+MV+DFR R+FGD KE G
Sbjct: 416 LPMMVSDFRQRVFGDHKEEG 435
|
Source: Populus tomentosa Species: Populus tomentosa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131118|ref|XP_002321005.1| predicted protein [Populus trichocarpa] gi|118484863|gb|ABK94298.1| unknown [Populus trichocarpa] gi|222861778|gb|EEE99320.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/440 (75%), Positives = 368/440 (83%), Gaps = 16/440 (3%)
Query: 1 MGSHELIHR--SQTSQTQDQIIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAIS 58
MGS ELI R +T T D SP+P+K PV+Y+LR +RL+F +G+AI+
Sbjct: 1 MGSSELIFRGHDETQPTPDAY-----SPKPAKPWLFVIRPVRYLLREKRLVFFLVGMAIA 55
Query: 59 SLIFSKLPVRQHQIANPAPLTTSETTHLSR------RRVLYEAAEV--QHVNAGGKVPLG 110
++ F+ LP PL S +H+S R YE +V Q N+GGK+PLG
Sbjct: 56 TVFFTILPSSSPHAHKYDPLPDS-FSHISHELTTPVRYKYYEPLQVGFQSANSGGKIPLG 114
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRH 170
L+RK LRI+VTGGAGFVGSHLVDRL+ RGDSVIVVDN+FTG+K+N++HHF NPRFELIRH
Sbjct: 115 LKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFKNPRFELIRH 174
Query: 171 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230
DVVEP+LLEVDQIYHLACPASPVHYK NPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS
Sbjct: 175 DVVEPLLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 234
Query: 231 EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
EVYGDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETL MDYHRG G+E RIARIFNTYG
Sbjct: 235 EVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYG 294
Query: 291 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNL 350
PRMCIDDGRVVSNFVAQALRKEP+TVYGDGKQTRSFQFVSDLVEGL+RLMEG+HVGPFNL
Sbjct: 295 PRMCIDDGRVVSNFVAQALRKEPMTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNL 354
Query: 351 GNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKG 410
GNPGEFTMLELA+VVQE ID NARIEFRPNTEDDPHKRKPDITKAK LLGWEP++ LRKG
Sbjct: 355 GNPGEFTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDITKAKDLLGWEPKIPLRKG 414
Query: 411 LPLMVADFRHRIFGDQKEAG 430
LP+MV+DFR RIFGD +E G
Sbjct: 415 LPMMVSDFRQRIFGDHREEG 434
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064446|ref|XP_002301480.1| predicted protein [Populus trichocarpa] gi|222843206|gb|EEE80753.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/435 (74%), Positives = 363/435 (83%), Gaps = 19/435 (4%)
Query: 1 MGSHELIHR--SQTSQTQDQIIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAIS 58
MGS ELI R +T D SP+P K + P++Y+L QRL+F+ +GIAI+
Sbjct: 1 MGSSELIFRGHDETQPASDAY-----SPKPPKPWLAVTRPIRYLLLEQRLVFILVGIAIA 55
Query: 59 SLIFSKLPVRQHQIA---NPAPLTTSETTHLSRRRVLYEAAEVQHVNAGGKVPLGLQRKS 115
+L F+ LP +P P T S +H N+GGK+PLGL+ KS
Sbjct: 56 TLFFTLLPSSSSSSPYEHDPIPNTFSHFSH---------ELTTPMPNSGGKIPLGLKSKS 106
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
LRI+VTGGAGFVGSHLVDRL+ RGDSVIVVDN+FTG+K+N++HHF NPRFELIRHDVVEP
Sbjct: 107 LRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFKNPRFELIRHDVVEP 166
Query: 176 ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 235
+LLEVDQIYHLACPASPVHYK NPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD
Sbjct: 167 LLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 226
Query: 236 PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCI 295
PLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG G+E RIARIFNTYGPRMCI
Sbjct: 227 PLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCI 286
Query: 296 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGE 355
DDGRVVSNFVAQALRKEP+TVYGDGKQTRSFQFVSDLVEGL+RLMEG+HVGPFNLGNPGE
Sbjct: 287 DDGRVVSNFVAQALRKEPMTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGE 346
Query: 356 FTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415
FTMLELA+VVQE ID NARIEFRPNTEDDPHKRKPDITKAK LLGWEP+++LR+GLP+MV
Sbjct: 347 FTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDITKAKDLLGWEPKISLRQGLPMMV 406
Query: 416 ADFRHRIFGDQKEAG 430
+DFR R+FGD KE G
Sbjct: 407 SDFRQRVFGDHKEEG 421
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|48093465|gb|AAT40109.1| putative UDP-glucuronate decarboxylase 3 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/419 (78%), Positives = 366/419 (87%), Gaps = 15/419 (3%)
Query: 25 SPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAISSLIFSKLPVRQ-------HQIANPAP 77
+P+P K ++ PV Y+L+ +RL+FLF GIAI+SLIF+ LP + + N A
Sbjct: 20 TPKPRKPWQNVIRPVHYMLKEKRLVFLFAGIAIASLIFAMLPSSRAPSGQGSYSYINNAI 79
Query: 78 LTT---SETTH---LSR-RRVLYEA-AEVQHVNAGGKVPLGLQRKSLRILVTGGAGFVGS 129
+ SE+TH ++R R++Y+ A + +++GGK+PLGLQRK LRILVTGGAGFVGS
Sbjct: 80 YDSHLPSESTHSHSIARAHRIIYQNRAGLGSLHSGGKIPLGLQRKGLRILVTGGAGFVGS 139
Query: 130 HLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189
HLVDRL+ RGDSVIVVDN+FTG+K+N++HHFGNPRFELIRHDVVEP+L+EVDQIYHLACP
Sbjct: 140 HLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLVEVDQIYHLACP 199
Query: 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNV 249
ASPVHYK NPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQ ETYWGNV
Sbjct: 200 ASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQKETYWGNV 259
Query: 250 NPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQAL 309
NPIGVRSCYDEGKRTAETLTMDYHRG G+E RIARIFNTYGPRMCIDDGRVVSNFVAQAL
Sbjct: 260 NPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQAL 319
Query: 310 RKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEII 369
RKEPLTVYGDGKQTRSFQFVSDLVEGL+RLMEG+HVGPFNLGNPGEFTMLELA VVQE I
Sbjct: 320 RKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAGVVQETI 379
Query: 370 DRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFGDQKE 428
D NA+IEFRPNT DDPHKRKPDI+KAK+LLGWEP+V LRKGLPLMV DFR RIFGD KE
Sbjct: 380 DPNAQIEFRPNTADDPHKRKPDISKAKELLGWEPKVPLRKGLPLMVQDFRQRIFGDHKE 438
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437374|ref|XP_002268787.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/445 (75%), Positives = 365/445 (82%), Gaps = 25/445 (5%)
Query: 1 MGSHELIHRSQTSQTQDQIIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAISSL 60
MGS ELI R +Q + SP+P K S P++Y+LR QRL+F +GIAI+++
Sbjct: 1 MGS-ELIFRGHETQP----MADGYSPKPPKPWLSVVRPIRYMLREQRLLFTLVGIAIATV 55
Query: 61 IFSKLPVRQHQIANPAPLT-----------TSETTHLSRRRVLYEAAEVQHVNAGG---K 106
+F LP ++PAP T SETT RV Y K
Sbjct: 56 VFLLLP------SSPAPYTHRFDPISDSYFPSETTTQLAHRVAYAGHGGGGFGFVNSGGK 109
Query: 107 VPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFE 166
VPLGL+RK LRI+VTGGAGFVGSHLVDRL+ RGDSVIVVDN+FTG+K+N++HHFGNPRFE
Sbjct: 110 VPLGLKRKGLRIVVTGGAGFVGSHLVDRLIRRGDSVIVVDNFFTGRKENVMHHFGNPRFE 169
Query: 167 LIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 226
LIRHDVVEP+LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL
Sbjct: 170 LIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 229
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
TSTSEVYGDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG +E RIARIF
Sbjct: 230 TSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAEVEVRIARIF 289
Query: 287 NTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG 346
NTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ+VSDLVEGLIRLMEG+HVG
Sbjct: 290 NTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMEGEHVG 349
Query: 347 PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVT 406
PFNLGNPGEFTMLELA+VVQE ID NA+IEFRPNTEDDPHKRKPDI+KAK LLGWEP+V
Sbjct: 350 PFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISKAKDLLGWEPKVA 409
Query: 407 LRKGLPLMVADFRHRIFGDQKEAGG 431
LRKGLPLMV+DFR RIFGD KE G
Sbjct: 410 LRKGLPLMVSDFRERIFGDHKEDGA 434
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817618|ref|XP_002876692.1| UDP-glucuronic acid decarboxylase 2 [Arabidopsis lyrata subsp. lyrata] gi|297322530|gb|EFH52951.1| UDP-glucuronic acid decarboxylase 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/438 (73%), Positives = 364/438 (83%), Gaps = 18/438 (4%)
Query: 3 SHELIHRSQTSQTQDQIIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAISSLIF 62
++ELI+R + DQ I P+P K P++Y+LR QRLIF+ +GIAI++L+F
Sbjct: 2 ANELINRRHEA---DQPIADAYYPKPIKPWFMVTRPMRYMLREQRLIFVLVGIAIATLVF 58
Query: 63 SKLPVRQHQIANPAPLT-------TSETTHLSRRRVLYEAAEVQHVN----AGGKVPLGL 111
+ P A P + S + +R ++++N GGK+PLGL
Sbjct: 59 TIFPRSTQSSAYSDPFSGYGIRPDESYVPAIQAQR----KPSLEYLNRIGATGGKIPLGL 114
Query: 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHD 171
+RK LR++VTGGAGFVGSHLVDRLM RGD+VIVVDN+FTG+K+N++HHF NP FELIRHD
Sbjct: 115 KRKGLRVVVTGGAGFVGSHLVDRLMARGDTVIVVDNFFTGRKENVMHHFSNPNFELIRHD 174
Query: 172 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231
VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE
Sbjct: 175 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 234
Query: 232 VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGP 291
VYGDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG +E RIARIFNTYGP
Sbjct: 235 VYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGP 294
Query: 292 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLG 351
RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL+RLMEG+HVGPFNLG
Sbjct: 295 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLG 354
Query: 352 NPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
NPGEFTMLELA+VVQE ID NA IEFRPNTEDDPHKRKPDITKAK+LLGWEP+V+LR+GL
Sbjct: 355 NPGEFTMLELAKVVQETIDHNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGL 414
Query: 412 PLMVADFRHRIFGDQKEA 429
PLMV DFR R+FGDQ+E
Sbjct: 415 PLMVKDFRQRVFGDQREG 432
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535177|ref|XP_003536125.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/430 (74%), Positives = 362/430 (84%), Gaps = 10/430 (2%)
Query: 1 MGSHELIHRSQTSQTQDQIIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAISSL 60
MGS ELI R +Q D SP+P K + P+ Y+LR QRL+F+ +G+ I++L
Sbjct: 1 MGS-ELIFRGHEAQPVDD----SYSPKPHKPWFTVTRPIHYMLREQRLVFVLVGVIIATL 55
Query: 61 IFSKLPVRQHQIANPAPLTTSETTHLSRRRVL--YEAAEVQHVNAGGKVPLGLQRKSLRI 118
F+ +P P + ++ R + Y V++ GKVPLG++RK LRI
Sbjct: 56 FFTLVPSSSSSSV---PYESLPISYFERESKIPAYHHRVAAAVHSVGKVPLGIKRKGLRI 112
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL 178
+VTGGAGFVGSHLVDRL+ RGDSVIVVDN+FTG+K+N++HHFGNPRFELIRHDVVEP+LL
Sbjct: 113 VVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLL 172
Query: 179 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ 238
EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ
Sbjct: 173 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ 232
Query: 239 HPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDG 298
HPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG G+E RIARIFNTYGPRMC+DDG
Sbjct: 233 HPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDG 292
Query: 299 RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTM 358
RVVSNFVAQALRKEPLTVYGDGKQTRSFQ+VSDLVEGLIRLMEG+HVGPFNLGNPGEFTM
Sbjct: 293 RVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMEGEHVGPFNLGNPGEFTM 352
Query: 359 LELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADF 418
LELA+VVQE ID +ARIE+RPNTEDDPHKRKPDI++AK LGWEP+V LRKGLPLMV+DF
Sbjct: 353 LELAKVVQETIDPDARIEYRPNTEDDPHKRKPDISRAKDQLGWEPKVDLRKGLPLMVSDF 412
Query: 419 RHRIFGDQKE 428
R RIFGDQKE
Sbjct: 413 RQRIFGDQKE 422
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|213950353|gb|ACJ54441.1| UDP-glucuronic acid decarboxylase 2 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/440 (75%), Positives = 368/440 (83%), Gaps = 24/440 (5%)
Query: 1 MGSHELIHRSQTSQTQDQIIGLDS-SPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAISS 59
MGS ELI+R +Q + DS SP+P K S V+Y+LR QRL+F+ +GIAI++
Sbjct: 1 MGS-ELIYRGHETQ-----LASDSYSPKPVKPWASVTRVVRYMLREQRLLFVLVGIAIAT 54
Query: 60 LIFSKLPVRQHQIANPAPLTTSETTHLSRRRVLYEAAEVQHV------------NAGGKV 107
L+F+ P + A P S T L + Y E Q+ N GK+
Sbjct: 55 LVFNVFPAPR---AAHGPHLHSTTPLLDS--IPYFPIETQNKFSYAHRLGFGSGNPTGKI 109
Query: 108 PLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFEL 167
PLGL+RK LRI+VTGGAGFVGSHLVDRL+ RGDSVIVVDN+FTG+K+N++HHFGNP FEL
Sbjct: 110 PLGLKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPNFEL 169
Query: 168 IRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 227
IRHDVVEP+LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT
Sbjct: 170 IRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 229
Query: 228 STSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
STSEVYGDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG G+E RIARIFN
Sbjct: 230 STSEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFN 289
Query: 288 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP 347
TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ+VSDLVEGL+RLMEG+HVGP
Sbjct: 290 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGP 349
Query: 348 FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTL 407
FNLGNPGEFTMLELAEVVQE ID NA+IEFRPNTEDDPHKRKPDI++AK+LLGW+P+V+L
Sbjct: 350 FNLGNPGEFTMLELAEVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWQPKVSL 409
Query: 408 RKGLPLMVADFRHRIFGDQK 427
RKGLPLMV+DFR RIFGD K
Sbjct: 410 RKGLPLMVSDFRQRIFGDHK 429
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 447 | ||||||
| TAIR|locus:2081675 | 445 | AUD1 "AT3G62830" [Arabidopsis | 0.970 | 0.975 | 0.719 | 5.6e-171 | |
| TAIR|locus:2053275 | 343 | UXS6 "UDP-XYL synthase 6" [Ara | 0.693 | 0.903 | 0.745 | 1.5e-124 | |
| TAIR|locus:2078206 | 341 | UXS5 "UDP-XYL synthase 5" [Ara | 0.693 | 0.909 | 0.742 | 1.5e-124 | |
| TAIR|locus:2168539 | 357 | UXS3 "UDP-glucuronic acid deca | 0.689 | 0.862 | 0.734 | 7.2e-123 | |
| TIGR_CMR|GSU_1815 | 311 | GSU_1815 "NAD-dependent epimer | 0.677 | 0.974 | 0.648 | 2.8e-105 | |
| UNIPROTKB|E1BMI4 | 420 | UXS1 "Uncharacterized protein" | 0.684 | 0.728 | 0.633 | 9.5e-105 | |
| UNIPROTKB|B3KV61 | 363 | UXS1 "UDP-glucuronate decarbox | 0.684 | 0.842 | 0.630 | 9.5e-105 | |
| UNIPROTKB|Q8NBZ7 | 420 | UXS1 "UDP-glucuronic acid deca | 0.684 | 0.728 | 0.630 | 9.5e-105 | |
| MGI|MGI:1915133 | 420 | Uxs1 "UDP-glucuronate decarbox | 0.684 | 0.728 | 0.630 | 9.5e-105 | |
| RGD|628680 | 420 | Uxs1 "UDP-glucuronate decarbox | 0.684 | 0.728 | 0.630 | 9.5e-105 |
| TAIR|locus:2081675 AUD1 "AT3G62830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1662 (590.1 bits), Expect = 5.6e-171, P = 5.6e-171
Identities = 321/446 (71%), Positives = 368/446 (82%)
Query: 5 ELIHRSQTSQTQDQIIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAISSLIFSK 64
ELI+R + DQ P+P K + P++Y+LR QRLIF+ +GIAI++L+F+
Sbjct: 4 ELINRRHET---DQPTADAYYPKPIKPWFTVTRPMRYMLREQRLIFVLVGIAIATLVFTI 60
Query: 65 LPVRQHQIANPAPLT----TSETTHLSRRRVLYEAAEVQHVN----AGGKVPLGLQRKSL 116
P P + + +++ + + + ++++N GGK+PLGL+RK L
Sbjct: 61 FPRSTQSTPYSDPFSGYGIRPDESYVPAIQAQRKPS-LEYLNRIGATGGKIPLGLKRKGL 119
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R++VTGGAGFVGSHLVDRLM RGD+VIVVDN+FTG+K+N++HHF NP FE+IRHDVVEPI
Sbjct: 120 RVVVTGGAGFVGSHLVDRLMARGDTVIVVDNFFTGRKENVMHHFSNPNFEMIRHDVVEPI 179
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP
Sbjct: 180 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 239
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
LQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG +E RIARIFNTYGPRMCID
Sbjct: 240 LQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCID 299
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL+RLMEG+HVGPFNLGNPGEF
Sbjct: 300 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEF 359
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
TMLELA+VVQE ID NA IEFRPNTEDDPHKRKPDITKAK+LLGWEP+V+LR+GLPLMV
Sbjct: 360 TMLELAKVVQETIDPNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMVK 419
Query: 417 DFRHRIFGDQKEAXXXXXXXDATSSS 442
DFR R+FGDQKE T+S+
Sbjct: 420 DFRQRVFGDQKEGSSAAATTTKTTSA 445
|
|
| TAIR|locus:2053275 UXS6 "UDP-XYL synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
Identities = 232/311 (74%), Positives = 263/311 (84%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHD 171
+ ++RILVTGGAGF+GSHLVD+LM + + VIV DNYFTG KDNL G+PRFELIRHD
Sbjct: 28 QSNMRILVTGGAGFIGSHLVDKLMQNEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 87
Query: 172 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231
V EP+ +EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 88 VTEPLFVEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 147
Query: 232 VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGP 291
VYGDPL HPQ E+YWGNVNPIGVRSCYDEGKR AETL DYHR GIE RIARIFNTYGP
Sbjct: 148 VYGDPLVHPQTESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 207
Query: 292 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLG 351
RM IDDGRVVSNF+AQALR E LTV G QTRSF +VSD+VEGL+RLMEGD GP N+G
Sbjct: 208 RMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVEGLMRLMEGDQTGPINIG 267
Query: 352 NPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
NPGEFTM+ELAE V+E+I + I+ NT DDP +RKPDI+KAK++LGWEP+V LR+GL
Sbjct: 268 NPGEFTMVELAETVKELIKPDVEIKMVENTPDDPRQRKPDISKAKEVLGWEPKVKLREGL 327
Query: 412 PLMVADFRHRI 422
PLM DFR R+
Sbjct: 328 PLMEEDFRLRL 338
|
|
| TAIR|locus:2078206 UXS5 "UDP-XYL synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
Identities = 231/311 (74%), Positives = 265/311 (85%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHD 171
+ ++RIL++GGAGF+GSHLVD+LM+ + VIV DNYFTG KDNL G+PRFELIRHD
Sbjct: 26 QSNMRILISGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHD 85
Query: 172 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231
V EP+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 86 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 145
Query: 232 VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGP 291
VYGDPL HPQ E+YWGNVNPIGVRSCYDEGKR AETL DYHR GIE RIARIFNTYGP
Sbjct: 146 VYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 205
Query: 292 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLG 351
RM IDDGRVVSNF+AQALR E LTV G QTRSF +VSD+V+GL+RLMEGD GP N+G
Sbjct: 206 RMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLMRLMEGDDTGPINIG 265
Query: 352 NPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
NPGEFTM+ELAE V+E+I+ + I+ NT DDP +RKPDITKAK++LGWEP+V LR+GL
Sbjct: 266 NPGEFTMVELAETVKELINPSIEIKMVENTPDDPRQRKPDITKAKEVLGWEPKVKLREGL 325
Query: 412 PLMVADFRHRI 422
PLM DFR R+
Sbjct: 326 PLMEEDFRLRL 336
|
|
| TAIR|locus:2168539 UXS3 "UDP-glucuronic acid decarboxylase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
Identities = 227/309 (73%), Positives = 264/309 (85%)
Query: 115 SLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
++RIL++GGAGF+GSHLVD+LM+ + V+V DNYFTG K+NL G+PRFELIRHDV
Sbjct: 44 NMRILISGGAGFIGSHLVDKLMENEKNEVVVADNYFTGSKENLKKWIGHPRFELIRHDVT 103
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233
EP+L+EVD+IYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSEVY
Sbjct: 104 EPLLIEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 163
Query: 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRM 293
GDPL HPQ E+YWGNVNPIGVRSCYDEGKR AETL DYHR GIE RIARIFNTYGPRM
Sbjct: 164 GDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRM 223
Query: 294 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNP 353
IDDGRVVSNF+AQALR E LTV G QTRSF +VSD+V+GLIRLMEG+ GP N+GNP
Sbjct: 224 NIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMVDGLIRLMEGNDTGPINIGNP 283
Query: 354 GEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPL 413
GEFTM+ELAE V+E+I+ + I+ NT DDP +RKPDI+KAK++LGWEP+V LR+GLPL
Sbjct: 284 GEFTMVELAETVKELINPSIEIKMVENTPDDPRQRKPDISKAKEVLGWEPKVKLREGLPL 343
Query: 414 MVADFRHRI 422
M DFR R+
Sbjct: 344 MEEDFRLRL 352
|
|
| TIGR_CMR|GSU_1815 GSU_1815 "NAD-dependent epimerase/dehydratase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
Identities = 197/304 (64%), Positives = 240/304 (78%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
+RILVTGGAGF+GSHL +RL+++G V+ +DN+FTG K N+ RFE+IRHD++EP
Sbjct: 1 MRILVTGGAGFIGSHLCERLLEQGHDVLCLDNFFTGSKRNIDRLMDFHRFEVIRHDIIEP 60
Query: 176 ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 235
ILLEVD+IY+LACPASPVHY++NPVKTIKT+V+GT+NMLGLAKRV AR L STSEVYGD
Sbjct: 61 ILLEVDRIYNLACPASPVHYQYNPVKTIKTSVMGTINMLGLAKRVRARILQASTSEVYGD 120
Query: 236 PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCI 295
P HPQ E+YWGNVNPIG+RSCYDEGKR AETL MDYHR G++ RIARIFNTYGPRM
Sbjct: 121 PTIHPQPESYWGNVNPIGIRSCYDEGKRVAETLLMDYHRQNGVDIRIARIFNTYGPRMAE 180
Query: 296 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV-GPFNLGNPG 354
DGRVVSNFV QALR E LTVYGDG QTRSF +V DL++GL+ LME D GP NLGNP
Sbjct: 181 HDGRVVSNFVVQALRGEDLTVYGDGSQTRSFCYVDDLLDGLVTLMEHDQFCGPVNLGNPE 240
Query: 355 EFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLM 414
E ++E A + + +++I +RP DDP +R+PDIT A+ +LGWEPRV+L +GL
Sbjct: 241 ETPIIEFARRIIAMTGSSSQIIYRPLPSDDPRQRQPDITLARTILGWEPRVSLDEGLAKT 300
Query: 415 VADF 418
+ F
Sbjct: 301 IEYF 304
|
|
| UNIPROTKB|E1BMI4 UXS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 194/306 (63%), Positives = 235/306 (76%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RILVTGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILVTGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQTEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
|
|
| UNIPROTKB|B3KV61 UXS1 "UDP-glucuronate decarboxylase 1, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 33 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 92
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 93 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 152
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 153 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 212
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 213 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 272
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 273 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 332
Query: 417 DFRHRI 422
FR +
Sbjct: 333 YFRKEL 338
|
|
| UNIPROTKB|Q8NBZ7 UXS1 "UDP-glucuronic acid decarboxylase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
|
|
| MGI|MGI:1915133 Uxs1 "UDP-glucuronate decarboxylase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
|
|
| RGD|628680 Uxs1 "UDP-glucuronate decarboxylase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 90 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 149
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 150 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 209
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 210 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 269
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 270 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 329
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 330 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 389
Query: 417 DFRHRI 422
FR +
Sbjct: 390 YFRKEL 395
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q91XL3 | UXS1_MOUSE | 4, ., 1, ., 1, ., 3, 5 | 0.6307 | 0.6845 | 0.7285 | yes | no |
| Q5R885 | UXS1_PONAB | 4, ., 1, ., 1, ., 3, 5 | 0.6307 | 0.6845 | 0.7285 | yes | no |
| Q8NBZ7 | UXS1_HUMAN | 4, ., 1, ., 1, ., 3, 5 | 0.6307 | 0.6845 | 0.7285 | yes | no |
| Q6GMI9 | UXS1_DANRE | 4, ., 1, ., 1, ., 3, 5 | 0.6291 | 0.6756 | 0.7224 | yes | no |
| Q5PQX0 | UXS1_RAT | 4, ., 1, ., 1, ., 3, 5 | 0.6307 | 0.6845 | 0.7285 | yes | no |
| Q6DF08 | UXS1_XENTR | 4, ., 1, ., 1, ., 3, 5 | 0.6176 | 0.6845 | 0.7268 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 447 | |||
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 0.0 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 0.0 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 0.0 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 3e-81 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 3e-75 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 5e-60 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 4e-57 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 2e-55 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 3e-53 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 3e-50 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 4e-48 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 8e-46 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 3e-45 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 3e-42 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 7e-42 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 4e-41 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 2e-38 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 2e-37 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 3e-35 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 2e-34 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 1e-33 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 3e-31 | |
| PLN02427 | 386 | PLN02427, PLN02427, UDP-apiose/xylose synthase | 2e-29 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 1e-26 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 3e-26 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 4e-25 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 4e-25 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 9e-25 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 9e-24 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 1e-23 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 5e-23 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 2e-22 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 8e-22 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 1e-20 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 5e-19 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 2e-18 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 9e-18 | |
| PRK08125 | 660 | PRK08125, PRK08125, bifunctional UDP-glucuronic ac | 2e-17 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 2e-17 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 3e-17 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 2e-16 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 8e-16 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 9e-16 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 1e-15 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 2e-15 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 2e-14 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 4e-14 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 1e-13 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 1e-13 | |
| PLN02725 | 306 | PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5- | 6e-13 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 1e-12 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 1e-12 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 3e-12 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 1e-11 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 3e-11 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 6e-11 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 1e-10 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 5e-09 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 1e-08 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 2e-08 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 3e-08 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 3e-08 | |
| cd05261 | 248 | cd05261, CAPF_like_SDR_e, capsular polysaccharide | 4e-08 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 5e-08 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 5e-08 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 1e-07 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 3e-07 | |
| TIGR04130 | 337 | TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd | 5e-07 | |
| cd02266 | 186 | cd02266, SDR, Short-chain dehydrogenases/reductase | 1e-06 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 1e-06 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 7e-06 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 9e-06 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 1e-05 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 2e-05 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 7e-05 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 9e-05 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 1e-04 | |
| PLN02662 | 322 | PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase | 1e-04 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 3e-04 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 0.001 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 0.002 | |
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 0.002 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 0.003 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 0.003 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 0.003 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 730 bits (1885), Expect = 0.0
Identities = 326/449 (72%), Positives = 368/449 (81%), Gaps = 15/449 (3%)
Query: 2 GSHELIHRSQTSQTQDQIIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAISSLI 61
+ ELI+R + Q P+P K P++Y+LR QRL+F+ +GIAI++L+
Sbjct: 1 MASELINRRHE---ETQPTADAYYPKPIKPWFVVTRPIRYMLREQRLVFVLVGIAIATLV 57
Query: 62 FSKLPVRQHQIA---NPAP---LTTSETTHLSRRRVLYEAAEV--QHVNAGGKVPLGLQR 113
F+ P +P + E+ + + + E + N+GGK+PLGL+R
Sbjct: 58 FTIFPSSSQPSPYSVDPLSGYGIRPDESYVPAIQAQRKPSLEYLNRIGNSGGKIPLGLKR 117
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
K LR++VTGGAGFVGSHLVDRLM RGDSVIVVDN+FTG+K+N++HHF NP FELIRHDVV
Sbjct: 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVV 177
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233
EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY
Sbjct: 178 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 237
Query: 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRM 293
GDPLQHPQ ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG +E RIARIFNTYGPRM
Sbjct: 238 GDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRM 297
Query: 294 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNP 353
CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL+RLMEG+HVGPFNLGNP
Sbjct: 298 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNP 357
Query: 354 GEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPL 413
GEFTMLELA+VVQE ID NA+IEFRPNTEDDPHKRKPDITKAK+LLGWEP+V+LR+GLPL
Sbjct: 358 GEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPL 417
Query: 414 MVADFRHRIFGDQKEAGGGGGGGDATSSS 442
MV DFR R+FGDQKE G ATS+S
Sbjct: 418 MVKDFRQRVFGDQKE----GSSTTATSTS 442
|
Length = 442 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 635 bits (1639), Expect = 0.0
Identities = 287/409 (70%), Positives = 335/409 (81%), Gaps = 3/409 (0%)
Query: 25 SPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAISSLIFSKLP-VRQHQIANPAPLTTSET 83
SP+ K +S + Y+ + QRL+F+ +GI I S F P + + A L T
Sbjct: 27 SPKTLKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQPSLSRLGPAESTSLITRSV 86
Query: 84 THLSRRRVLYEAAEVQHVNAG--GKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDS 141
+ + G G+VP+G+ RK LRI+VTGGAGFVGSHLVD+L+ RGD
Sbjct: 87 SIAVTDSPPSSSTFNSSGGGGRTGRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDE 146
Query: 142 VIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVK 201
VIV+DN+FTG+K+NL+H FGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYK+NPVK
Sbjct: 147 VIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVK 206
Query: 202 TIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEG 261
TIKTNV+GTLNMLGLAKRVGARFLLTSTSEVYGDPL+HPQ ETYWGNVNPIG RSCYDEG
Sbjct: 207 TIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEG 266
Query: 262 KRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321
KRTAETL MDYHRG G+E RIARIFNTYGPRMC+DDGRVVSNFVAQ +RK+P+TVYGDGK
Sbjct: 267 KRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGK 326
Query: 322 QTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT 381
QTRSFQ+VSDLV+GL+ LMEG+HVGPFNLGNPGEFTMLELAEVV+E ID +A IEF+PNT
Sbjct: 327 QTRSFQYVSDLVDGLVALMEGEHVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNT 386
Query: 382 EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFGDQKEAG 430
DDPHKRKPDI+KAK+LL WEP+++LR+GLPLMV+DFR+RI + + G
Sbjct: 387 ADDPHKRKPDISKAKELLNWEPKISLREGLPLMVSDFRNRILNEDEGKG 435
|
Length = 436 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 577 bits (1489), Expect = 0.0
Identities = 216/304 (71%), Positives = 251/304 (82%), Gaps = 1/304 (0%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGF+GSHL DRL++ G VI VDN+FTG+K N+ H G+P FE IRHDV EP+
Sbjct: 2 RILITGGAGFLGSHLCDRLLEDGHEVICVDNFFTGRKRNIEHLIGHPNFEFIRHDVTEPL 61
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
LEVDQIYHLACPASPVHY++NP+KT+KTNV+GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 62 YLEVDQIYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGARVLLASTSEVYGDP 121
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ E+YWGNVNPIG RSCYDEGKR AETL M YHR G++ RIARIFNTYGPRM +
Sbjct: 122 EVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVRIARIFNTYGPRMHPN 181
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH-VGPFNLGNPGE 355
DGRVVSNF+ QALR EP+TVYGDG QTRSFQ+VSDLVEGLIRLM D+ GP NLGNP E
Sbjct: 182 DGRVVSNFIVQALRGEPITVYGDGTQTRSFQYVSDLVEGLIRLMNSDYFGGPVNLGNPEE 241
Query: 356 FTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415
FT+LELAE+V+++ + I F P EDDP +R+PDI+KAK+LLGWEP+V L +GL +
Sbjct: 242 FTILELAELVKKLTGSKSEIVFLPLPEDDPKRRRPDISKAKELLGWEPKVPLEEGLRRTI 301
Query: 416 ADFR 419
FR
Sbjct: 302 EYFR 305
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 252 bits (647), Expect = 3e-81
Identities = 123/309 (39%), Positives = 174/309 (56%), Gaps = 18/309 (5%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV---- 172
R+LVTGGAGF+GSHLV+RL++RG VIV+DN TGKK+NL P + I D+
Sbjct: 1 RVLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEV--KPNVKFIEGDIRDDE 58
Query: 173 -VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 230
VE VD ++H A AS +P+K + NV+GTLN+L A++ G RF+ S+S
Sbjct: 59 LVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKRFVYASSS 118
Query: 231 EVYGDPLQHPQAETYWGN-VNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
VYGDP P+ E + N ++P V K E + R G+ R FN Y
Sbjct: 119 SVYGDPPYLPKDEDHPPNPLSPYAV------SKYAGELYCQVFARLYGLPTVSLRYFNVY 172
Query: 290 GPRMCIDDGR--VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP 347
GPR + G V+ F+ +AL+ EP T+YGDG+QTR F +V D+VE + G
Sbjct: 173 GPRQDPNGGYAAVIPIFIERALKGEPPTIYGDGEQTRDFTYVEDVVEANLLAATAGAGGE 232
Query: 348 -FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVT 406
+N+G ++ ELAE+++EI+ + + P D DI+KAK+LLGWEP+V+
Sbjct: 233 VYNIGTGKRTSVNELAELIREILGKELEPVYAPPRPGDVRHSLADISKAKKLLGWEPKVS 292
Query: 407 LRKGLPLMV 415
+GL L V
Sbjct: 293 FEEGLRLTV 301
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 3e-75
Identities = 117/315 (37%), Positives = 159/315 (50%), Gaps = 15/315 (4%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RILVTGGAGF+GSHLV+RL+ G V +D G + +L D+V+ +
Sbjct: 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPL-LSGVEFVVLDLTDRDLVDEL 60
Query: 177 LLEV-DQIYHLACPASPVHYK-FNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTST-SEV 232
V D + HLA +S +P + + NV GTLN+L A+ G RF+ S+ S V
Sbjct: 61 AKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVV 120
Query: 233 YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292
YGDP P E G P + Y K AE L Y R G+ I R FN YGP
Sbjct: 121 YGDPPPLPIDEDL-GPPRP---LNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPG 176
Query: 293 MCID-DGRVVSNFVAQALRKEPL-TVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNL 350
D VVS F+ Q L+ EP+ + GDG QTR F +V D+ + L+ +E G FN+
Sbjct: 177 DKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGGVFNI 236
Query: 351 GNPG-EFTMLELAEVVQEIIDRNAR-IEFRPNT--EDDPHKRKPDITKAKQLLGWEPRVT 406
G+ E T+ ELAE V E + A I + P D + DI+KA+ LGWEP+V+
Sbjct: 237 GSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVS 296
Query: 407 LRKGLPLMVADFRHR 421
L +GL + +
Sbjct: 297 LEEGLADTLEWLLKK 311
|
Length = 314 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 5e-60
Identities = 110/316 (34%), Positives = 155/316 (49%), Gaps = 31/316 (9%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV---- 172
+LVTG GF+GSHL +RL+ G V +D Y + L+ + + RF I DV
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDAS 60
Query: 173 -VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTS 230
VE ++ + D ++HLA + + P+ ++TNV GTLN+L A + R + TSTS
Sbjct: 61 EVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRVVHTSTS 120
Query: 231 EVYGDPLQHPQAETYWGNVNPIGV----RSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
EVYG P E +P+ RS Y K+ A+ L Y R G+ I R F
Sbjct: 121 EVYGTAQDVPIDED-----HPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTIIRPF 175
Query: 287 NTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV- 345
NTYGPR V+ ++Q + L GDG TR F FV D G I +++
Sbjct: 176 NTYGPRQ--SARAVIPTIISQRAIGQRLINLGDGSPTRDFNFVKDTARGFIDILDAIEAV 233
Query: 346 -GPFNLGNPGEFT---------MLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKA 395
N G+ E + + EL E+V + D E+RP + +R PDI KA
Sbjct: 234 GEIINNGSGEEISIGNPAVELIVEELGEMVLIVYD--DHREYRP-GYSEVERRIPDIRKA 290
Query: 396 KQLLGWEPRVTLRKGL 411
K+LLGWEP+ +LR GL
Sbjct: 291 KRLLGWEPKYSLRDGL 306
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 4e-57
Identities = 111/316 (35%), Positives = 165/316 (52%), Gaps = 28/316 (8%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP- 175
RILVTGGAGF+GSHLVDRL++ G+ V+VVDN +G+++N+ F N F ++ D+++
Sbjct: 1 RILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDTA 60
Query: 176 ---ILLEVDQIYHLACPASP-VHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229
+ D ++HLA A+P V +P ++ NV+ T N+L + G R + S+
Sbjct: 61 DKVAKKDGDTVFHLA--ANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFASS 118
Query: 230 SEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
S VYG+ P E Y PI S Y K AE L Y G +A I R N
Sbjct: 119 STVYGEAKVIPTPEDY--PPLPI---SVYGASKLAAEALISAYAHLFGFQAWIFRFANIV 173
Query: 290 GPRMCIDDGRVVSNFVAQALRKEP--LTVYGDGKQTRSFQFVSDLVEGLIRLMEGD--HV 345
GPR V+ +F+ + L++ P L V GDG+Q +S+ +VSD V+ ++ E V
Sbjct: 174 GPRS---THGVIYDFINK-LKRNPNELEVLGDGRQRKSYLYVSDCVDAMLLAWEKSTEGV 229
Query: 346 GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE----DDPHKRKPDITKAKQLLGW 401
FNLGN ++ E+AE+V E + R ++ D P+ R DI K K LGW
Sbjct: 230 NIFNLGNDDTISVNEIAEIVIEELGLKPRFKYSGGDRGWKGDVPYMRL-DIEKLK-ALGW 287
Query: 402 EPRVTLRKGLPLMVAD 417
+PR + + V +
Sbjct: 288 KPRYNSEEAVRKTVRE 303
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 2e-55
Identities = 84/237 (35%), Positives = 114/237 (48%), Gaps = 40/237 (16%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL 177
ILVTGGAGF+GSHLV RL++RG V+V+D
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL----------------------------- 31
Query: 178 LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEVYGDP 236
D + HLA NP + +TNVVGTLN+L A++ G RF+ S++ VYG P
Sbjct: 32 ---DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSASVYGSP 88
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
P+ E P+ S Y K AE L Y G+ I R+ N YGP
Sbjct: 89 EGLPEEEETP--PRPL---SPYGVSKLAAEHLLRSYGESYGLPVVILRLANVYGPGQRPR 143
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV--GPFNLG 351
VV++F+ +AL +PLTV+G G QTR F V D+V ++ +E G +N+G
Sbjct: 144 LDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAILHALENPLEGGGVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 3e-53
Identities = 102/310 (32%), Positives = 130/310 (41%), Gaps = 19/310 (6%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
R LVTG GF+GSHL +RL G V D +L +
Sbjct: 1 QRALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDEFHLVDLREMENCLK 60
Query: 176 ILLEVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVY 233
VD ++HLA + Y + N + N + NML A+ G RFL S++ VY
Sbjct: 61 ATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSACVY 120
Query: 234 GDPLQHPQAETYWG----NVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
P T + P + Y K E L Y+ GIE RI R N Y
Sbjct: 121 --PEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIETRIVRFHNIY 178
Query: 290 GPRMCIDDGRVVSNFVAQAL-RK-------EPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341
GPR D GR A+ RK + ++GDG QTRSF ++ D VEGL RLME
Sbjct: 179 GPRGTWDGGR---EKAPAAMCRKVATAKDGDRFEIWGDGLQTRSFTYIDDCVEGLRRLME 235
Query: 342 GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGW 401
D P NLG+ +M ELAE+V + I R D T K+ LGW
Sbjct: 236 SDFGEPVNLGSDEMVSMNELAEMVLSFSGKPLEIIHHTPGPQGVRGRNSDNTLLKEELGW 295
Query: 402 EPRVTLRKGL 411
EP L +GL
Sbjct: 296 EPNTPLEEGL 305
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 3e-50
Identities = 87/245 (35%), Positives = 117/245 (47%), Gaps = 23/245 (9%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL 177
ILVTGG GF+GSHLV RL+ G VIV+ ++ R D+ +P
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVL---GRRRRSES---LNTGRIRFHEGDLTDPDA 54
Query: 178 LE-------VDQIYHLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 228
LE D + HLA S V F P I+ NV+GTL +L A+R G RF+ S
Sbjct: 55 LERLLAEVQPDAVIHLAA-QSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRFVFAS 113
Query: 229 TSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNT 288
+SEVYGD P E P+G S Y K AE L Y R G+ A I R+FN
Sbjct: 114 SSEVYGDVADPPITEDT-----PLGPLSPYAAAKLAAERLVEAYARAYGLRAVILRLFNV 168
Query: 289 YGPR-MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME-GDHVG 346
YGP V+ + + L +P+ + GDG Q R F +V D+ ++ +E D
Sbjct: 169 YGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAILLALEHPDGGE 228
Query: 347 PFNLG 351
+N+G
Sbjct: 229 IYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 166 bits (424), Expect = 4e-48
Identities = 103/324 (31%), Positives = 164/324 (50%), Gaps = 31/324 (9%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVV 173
+ILVTGGAGF+GS+ V L+++ +I +D + G +NL +PR+ ++ D+
Sbjct: 2 KILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSSSPRYRFVKGDIC 61
Query: 174 EPILL-------EVDQIYHLACPA-SPVHYKFN-PVKTIKTNVVGTLNMLGLAKRVGA-R 223
+ L+ ++D + H A A S V + P I+TNV+GT +L A++ G R
Sbjct: 62 DAELVDRLFEEEKIDAVIHFA--AESHVDRSISDPEPFIRTNVLGTYTLLEAARKYGVKR 119
Query: 224 FLLTSTSEVYGD-PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARI 282
F+ ST EVYGD ET + P S Y K A+ L YHR G+ I
Sbjct: 120 FVHISTDEVYGDLLDDGEFTETS--PLAP---TSPYSASKAAADLLVRAYHRTYGLPVVI 174
Query: 283 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342
R N YGP + +++ F+ AL +PL +YGDG R + +V D + ++E
Sbjct: 175 TRCSNNYGPYQFPE--KLIPLFILNALDGKPLPIYGDGLNVRDWLYVEDHARAIELVLEK 232
Query: 343 DHVGP-FNLGNPGEFTMLELAEVVQEIIDRNA-RIEFRPNTEDDP-HKRK--PDITKAKQ 397
VG +N+G E T LEL +++ E++ ++ I + +D P H R+ D +K ++
Sbjct: 233 GRVGEIYNIGGGNELTNLELVKLILELLGKDESLITY---VKDRPGHDRRYAIDSSKIRR 289
Query: 398 LLGWEPRVTLRKGLPLMVADFRHR 421
LGW P+V+ +GL V +
Sbjct: 290 ELGWRPKVSFEEGLRKTVRWYLEN 313
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 8e-46
Identities = 97/310 (31%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF------TGKKDNLIHHFGNPRFELIRH 170
R+L+ GG GF+GSHLVD L++ G V V D G D + + N
Sbjct: 1 RVLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYELPLGGVDYIKGDYENR------A 54
Query: 171 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL--AKRVGARFLLTS 228
D+ L+ +D + HLA +P NP+ I+TNV T+ +L A +G +S
Sbjct: 55 DLES-ALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFASS 113
Query: 229 TSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNT 288
VYG P Q P +E+ PI S Y K E Y G++ + RI N
Sbjct: 114 GGTVYGVPEQLPISESD--PTLPI---SSYGISKLAIEKYLRLYQYLYGLDYTVLRISNP 168
Query: 289 YGPRMCIDDGR-VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP 347
YGP D + V+ + + LR EP+ ++GDG+ R + ++ DLVE L+ L+ G
Sbjct: 169 YGPGQRPDGKQGVIPIALNKILRGEPIEIWGDGESIRDYIYIDDLVEALMALLR--SKGL 226
Query: 348 FNLGNPGEFTMLELAEVVQEIIDRNAR---IEFRPNTEDDPHKRKPDITKAKQLLGWEPR 404
+ N G LAE++ EI R + + P D K DI++A+ LGW P+
Sbjct: 227 EEVFNIGSGIGYSLAELIAEIEKVTGRSVQVIYTPARTTDVPKIVLDISRARAELGWSPK 286
Query: 405 VTLRKGLPLM 414
++L GL
Sbjct: 287 ISLEDGLEKT 296
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 3e-45
Identities = 90/325 (27%), Positives = 137/325 (42%), Gaps = 32/325 (9%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVI-VVDNYFTGKKDNLIHHFGN-PRFELIRHDVVE 174
R L+TG G GS+L + L+++G V +V + D + H + N R L D+ +
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTDRIDHLYINKDRITLHYGDLTD 60
Query: 175 PI-LLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK--RVGARFL 225
L D+IYHLA + +P T + N VGTLN+L + + ARF
Sbjct: 61 SSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLDARFY 120
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARI 285
S+SE YG + PQ+ET P RS Y K A+ +T +Y G+ A R+
Sbjct: 121 QASSSEEYGKVQELPQSET-----TPFRPRSPYAVSKLYADWITRNYREAYGLFAVNGRL 175
Query: 286 FNTYGPRMCIDDGRVVSNFVAQALR----KEPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341
FN GPR + V Q R +P+ G+ R + D VE L++
Sbjct: 176 FNHEGPRR--GETFVTRKITRQVARIKAGLQPVLKLGNLDAKRDWGDARDYVEAYWLLLQ 233
Query: 342 GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIE-------FRPNTEDDPHKRKPDITK 394
+ + ++ E E+ E IE FRP D D +K
Sbjct: 234 QGEPDDYVIATGETHSVREFVELAFEESGLTGDIEVEIDPRYFRPTEVD---LLLGDPSK 290
Query: 395 AKQLLGWEPRVTLRKGLPLMVADFR 419
A++ LGW+P V+ + + M+
Sbjct: 291 AREELGWKPEVSFEELVREMLDADL 315
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 3e-42
Identities = 95/333 (28%), Positives = 160/333 (48%), Gaps = 50/333 (15%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDN---YF--TGKKDNLIHHFGNPRFELIRHD 171
+ILVTG AGF+G H+ RL++RGD V+ +DN Y+ K+ L + F+ ++ D
Sbjct: 2 KILVTGAAGFIGFHVAKRLLERGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVKGD 61
Query: 172 VVEPILL-------EVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVGAR 223
+ + L E D + HLA A V Y NP + +N+VG LN+L L + G +
Sbjct: 62 LEDREALRRLFKDHEFDAVIHLAAQAG-VRYSLENPHAYVDSNIVGFLNLLELCRHFGVK 120
Query: 224 -FLLTSTSEVYGDPLQHPQAETYWGNVN-PIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
+ S+S VYG + P +E V+ PI S Y K+ E + Y GI
Sbjct: 121 HLVYASSSSVYGLNTKMPFSED--DRVDHPI---SLYAATKKANELMAHTYSHLYGIPTT 175
Query: 282 IARIFNTYG----PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337
R F YG P M + F L +P+ V+ DG +R F ++ D+VEG++
Sbjct: 176 GLRFFTVYGPWGRPDMAL------FLFTKAILEGKPIDVFNDGNMSRDFTYIDDIVEGVV 229
Query: 338 RLM----------EGDHVGP---------FNLGNPGEFTMLELAEVVQEIIDRNARIEFR 378
R + + + P +N+GN +++ E +++ + + A+ +
Sbjct: 230 RALDTPAKPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKALGKKAKKNYL 289
Query: 379 PNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
P + D + DI+K ++LLG++P+ +L +G+
Sbjct: 290 PMQKGDVPETYADISKLQRLLGYKPKTSLEEGV 322
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 7e-42
Identities = 100/338 (29%), Positives = 152/338 (44%), Gaps = 42/338 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDN----YFTGKKDNLIHHFGNPRFELIRHDV 172
R+L+TGGAGF+GS+L + +G VI DN G L + + + D+
Sbjct: 2 RVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLAWLKANREDGGVRFVHGDI 61
Query: 173 -----VEPILLEVDQIYHLACPASPVHYKF--NPVKTIKTNVVGTLNMLGLAKRVG--AR 223
+E + ++D I H A A P +P +TN +GTLN+L A++ A
Sbjct: 62 RNRNDLEDLFEDIDLIIHTA--AQPSVTTSASSPRLDFETNALGTLNVLEAARQHAPNAP 119
Query: 224 FLLTSTSEVYGD-----PLQHPQAETYW----GNVNPIGV---------RSCYDEGKRTA 265
F+ TST++VYGD PL+ + ET + +P G+ S Y K A
Sbjct: 120 FIFTSTNKVYGDLPNYLPLE--ELETRYELAPEGWSPAGISESFPLDFSHSLYGASKGAA 177
Query: 266 ETLTMDYHRGLGIEARIARIFNTYGPR-MCIDDGRVVSNFVAQALRKEPLTVYG-DGKQT 323
+ +Y R G++ + R GPR +D V+ F+ A+ +PLT++G GKQ
Sbjct: 178 DQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLKCAVTGKPLTIFGYGGKQV 237
Query: 324 RSFQFVSDLVEGLIRLMEG-DHVGP--FNLGNPGE--FTMLELAEVVQEIIDRNARIEFR 378
R +DLV +R + D FN+G E ++LEL + +EI R
Sbjct: 238 RDVLHSADLVNLYLRQFQNPDRRKGEVFNIGGGRENSVSLLELIALCEEITGRKMESYKD 297
Query: 379 PNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
N D DI K K+ GW+P R+ L + A
Sbjct: 298 ENRPGDQIWYISDIRKIKEKPGWKPERDPREILAEIYA 335
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 4e-41
Identities = 97/314 (30%), Positives = 148/314 (47%), Gaps = 42/314 (13%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG---------NPRFELI 168
+LVTG GF+GSHLV+ L+ +G V Y N + +G + E++
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLY------NSFNSWGWLDTSPPEVKDKIEVV 54
Query: 169 RHDVVEPILLE-----VDQIYHLAC-PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG- 221
D+ +P + D ++HLA A P Y P + TNV GTLN+L A+ +G
Sbjct: 55 TGDIRDPDSVRKAMKGCDVVFHLAALIAIPYSYI-APDSYVDTNVTGTLNVLQAARDLGV 113
Query: 222 ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEAR 281
+ + TSTSEVYG P E + P+ +S Y K A+ L + ++R
Sbjct: 114 EKVVHTSTSEVYGTAQYVPIDEKH-----PLQGQSPYSASKIGADQLALSFYRSFNTPVT 168
Query: 282 IARIFNTYGPRMCIDDGR-VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLM 340
I R FNTYGPR R V+ + Q + G TR F +V+D V G I +
Sbjct: 169 IIRPFNTYGPR---QSARAVIPTIITQIASGKRRIKLGSLSPTRDFNYVTDTVRGFIAIA 225
Query: 341 EGDH-VGP-FNLGNPGEFTMLELAEVVQEIIDRNARIE-----FRP-NTEDDPHKRKPDI 392
E D VG N+G+ E ++ + +++ EI+ IE RP +E + + D
Sbjct: 226 ESDKTVGEVINIGSNFEISIGDTVKLIAEIMGSEVEIETDEERLRPEKSEVE--RLWCDN 283
Query: 393 TKAKQLLGWEPRVT 406
+K K+L GW+P+ +
Sbjct: 284 SKIKELTGWQPKYS 297
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-38
Identities = 104/320 (32%), Positives = 155/320 (48%), Gaps = 37/320 (11%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRG--DSVIVVD--NYFTGKKDNLIHHFGNPRFELIRHDV 172
+ILVTGGAGF+GS+ V ++++ D V+ +D Y G +NL +PR+ ++ D+
Sbjct: 2 KILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY-AGNLENLADVEDSPRYRFVQGDI 60
Query: 173 VEPILLE-------VDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKR--VGA 222
+ L++ D + H A S V P I+TNVVGT +L A++
Sbjct: 61 CDRELVDRLFKEYQPDAVVHFAA-ESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKF 119
Query: 223 RFLLTSTSEVYGD-PLQHPQA-ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEA 280
RF ST EVYGD L ET NP S Y K ++ L Y R G+ A
Sbjct: 120 RFHHISTDEVYGDLGLDDDAFTET--TPYNP---SSPYSASKAASDLLVRAYVRTYGLPA 174
Query: 281 RIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLM 340
I R N YGP + +++ + AL +PL VYGDG Q R + +V D + ++
Sbjct: 175 TITRCSNNYGPYQFPE--KLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVL 232
Query: 341 EGDHVGP-FNLGNPGEFTMLELAEVVQEIIDRNA-----RIEFRPNTEDDP-HKRK--PD 391
+G +N+G E T LE+ + + E++ ++ I F ED P H R+ D
Sbjct: 233 TKGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITF---VEDRPGHDRRYAID 289
Query: 392 ITKAKQLLGWEPRVTLRKGL 411
+K K+ LGW P+ T GL
Sbjct: 290 ASKIKRELGWRPQETFETGL 309
|
Length = 340 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-37
Identities = 105/314 (33%), Positives = 153/314 (48%), Gaps = 30/314 (9%)
Query: 117 RILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFT--GKKDNLIHHFGNPRFELIRHDV 172
RILVTGGAGF+GS+ V R + D+ ++V + T G +NL NPR+ ++ D+
Sbjct: 1 RILVTGGAGFIGSNFV-RYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDI 59
Query: 173 -----VEPILLE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR--VGAR 223
V + E D + H A + P I+TNVVGT +L ++ R
Sbjct: 60 GDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFR 119
Query: 224 FLLTSTSEVYGD-PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARI 282
F ST EVYGD ET P+ S Y K ++ L YHR G+ A I
Sbjct: 120 FHHISTDEVYGDLEKGDAFTET-----TPLAPSSPYSASKAASDHLVRAYHRTYGLPALI 174
Query: 283 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342
R N YGP + +++ + AL +PL VYGDG+Q R + +V D + ++E
Sbjct: 175 TRCSNNYGPYQFPE--KLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEK 232
Query: 343 DHVGP-FNLGNPGEFTMLELAEVVQEIIDRNAR-IEFRPNTEDDP-HKRK--PDITKAKQ 397
VG +N+G E T LE+ E + E++ ++ I ED P H R+ D +K K+
Sbjct: 233 GRVGETYNIGGGNERTNLEVVETILELLGKDEDLITH---VEDRPGHDRRYAIDASKIKR 289
Query: 398 LLGWEPRVTLRKGL 411
LGW P+ T +GL
Sbjct: 290 ELGWAPKYTFEEGL 303
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-35
Identities = 101/349 (28%), Positives = 155/349 (44%), Gaps = 36/349 (10%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRF-------E 166
+ LRI +TG GF+ SH+ RL G +I D KK+ H F +
Sbjct: 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD----WKKN---EHMSEDMFCHEFHLVD 72
Query: 167 LIRHDVVEPILLEVDQIYHLACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RF 224
L + + VD +++LA + + + N + N + + NML A+ G RF
Sbjct: 73 LRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF 132
Query: 225 LLTSTSEVYGDPLQHPQAETYWGNVN-------PIGVRSCYDEGKRTAETLTMDYHRGLG 277
S++ +Y P+ + NV+ P + Y K E L Y + G
Sbjct: 133 FYASSACIY------PEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFG 186
Query: 278 IEARIARIFNTYGPRMCIDDGR--VVSNFVAQAL-RKEPLTVYGDGKQTRSFQFVSDLVE 334
IE RI R N YGP GR + F +AL + ++GDGKQTRSF F+ + VE
Sbjct: 187 IECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVE 246
Query: 335 GLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITK 394
G++RL + D P N+G+ +M E+AE+ ++ I+ P E R D T
Sbjct: 247 GVLRLTKSDFREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPE-GVRGRNSDNTL 305
Query: 395 AKQLLGWEPRVTLRKGLPLMVADFRHRIFGDQKEAGGGGGGGDATSSSM 443
K+ LGW P + L+ GL + + +I +KE G +SS +
Sbjct: 306 IKEKLGWAPTMRLKDGLRITYFWIKEQI---EKEKAEGSDAAAYSSSKV 351
|
Length = 370 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-34
Identities = 88/328 (26%), Positives = 149/328 (45%), Gaps = 35/328 (10%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
+ILVTGGAG++GSH V +L++ G V+++DN G ++ L + D+ +
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERITPVTFVEGDLRDRE 60
Query: 177 LL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 228
LL ++D + H A + P+K + NVVGTLN+L ++ G +F+ +S
Sbjct: 61 LLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFIFSS 120
Query: 229 TSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR-GLGIEARIARIFN 287
++ VYG+P P +E P+G + Y K +E + D + I R FN
Sbjct: 121 SAAVYGEPSSIPISEDS-----PLGPINPYGRSKLMSEQILRDLQKADPDWSYVILRYFN 175
Query: 288 TYGPRMCIDDGRVVSN------FVAQAL--RKEPLTVYG------DGKQTRSFQFVSDLV 333
G D G + Q +++ LT++G DG R + V DL
Sbjct: 176 VAGAHPSGDIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLA 235
Query: 334 EGLIRLMEGDHVGP----FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRK 389
+ + +E G +NLG F++LE+ E +++ ++ +E P DP
Sbjct: 236 DAHLAALEYLLNGGGSHVYNLGYGQGFSVLEVIEAFKKVSGKDFPVELAPRRPGDPASLV 295
Query: 390 PDITKAKQLLGWEPRVTLRKGLPLMVAD 417
D +K ++ LGW+P L ++ D
Sbjct: 296 ADASKIRRELGWQP---KYTDLEEIIKD 320
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-33
Identities = 95/330 (28%), Positives = 150/330 (45%), Gaps = 42/330 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
++LVTGGAG++GSH V L++ G V+V+DN G ++ + R E D+ +
Sbjct: 1 KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHRE-ALPRIEKIRIEFYEGDIRDRA 59
Query: 177 LLE-------VDQIYHLACPAS---PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFL 225
L+ +D + H A + V P+K NVVGTLN+L + G F+
Sbjct: 60 ALDKVFAEHKIDAVIHFAALKAVGESVQ---KPLKYYDNNVVGTLNLLEAMRAHGVKNFV 116
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARI 285
+S++ VYG+P P E P+ + Y K E + D + G+ I R
Sbjct: 117 FSSSAAVYGEPETVPITEEA-----PLNPTNPYGRTKLMVEQILRDLAKAPGLNYVILRY 171
Query: 286 FNTYG--PRMCI-DDGRVVSN---FVAQAL--RKEPLTVYG------DGKQTRSFQFVSD 331
FN G P I +D ++ +N +V Q R+E L ++G DG R + V D
Sbjct: 172 FNPAGAHPSGLIGEDPQIPNNLIPYVLQVALGRREKLAIFGDDYPTPDGTCVRDYIHVVD 231
Query: 332 LVEG----LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHK 387
L + L +L G +NLG +++LE+ E +++ + E P DP
Sbjct: 232 LADAHVLALEKLENGGGSEIYNLGTGRGYSVLEVVEAFEKVSGKPIPYEIAPRRAGDPAS 291
Query: 388 RKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417
D +KA++ LGW+P+ L M D
Sbjct: 292 LVADPSKAREELGWKPKRDLED----MCED 317
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 3e-31
Identities = 98/333 (29%), Positives = 154/333 (46%), Gaps = 50/333 (15%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
++LVTGGAG++GSH V +L+ G V+V+DN G K L+ + D+++
Sbjct: 2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQF----KFYEGDLLDRA 57
Query: 177 LLE-------VDQIYHLACPAS---PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FL 225
LL +D + H A S V NP+K NVVGTLN++ + G + F+
Sbjct: 58 LLTAVFEENKIDAVVHFAASISVGESVQ---NPLKYYDNNVVGTLNLIEAMLQTGVKKFI 114
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARI 285
+ST+ VYG+P P +ET P+ + Y K +E + D + + I R
Sbjct: 115 FSSTAAVYGEPTTSPISETS-----PLAPINPYGRSKLMSEEILRDAAKANPFKVVILRY 169
Query: 286 FNTYGPRMCIDDGRV------VSN---FVAQAL--RKEPLTVYGDGKQT------RSFQF 328
FN G DG + + A+A +++ L ++GD T R +
Sbjct: 170 FNVAGACP---DGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIH 226
Query: 329 VSDLVEG----LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDD 384
V DL + L L EG FNLG+ F++LE+ E +++ R+ +E P D
Sbjct: 227 VDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGD 286
Query: 385 PHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417
P D +KA+Q+LGW+P L ++ D
Sbjct: 287 PAILVADSSKARQILGWQPT---YDDLEDIIKD 316
|
Length = 329 |
| >gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 106/355 (29%), Positives = 163/355 (45%), Gaps = 71/355 (20%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNYFTGKKDNLIHHFGNP-------RF 165
K L I + G GF+GSHL ++LM + V+ +D Y ++ I H P R
Sbjct: 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVY-----NDKIKHLLEPDTVPWSGRI 67
Query: 166 EL----IRHDV-VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV 220
+ I+HD +E ++ D +LA +P Y P+ TI +N + L ++
Sbjct: 68 QFHRINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN 127
Query: 221 GARFLLTSTSEVYGD------PLQHP--QAETYW---GNVNPI------GVRSCYDEGKR 263
R + ST EVYG P HP Q ++ + +P R Y K+
Sbjct: 128 NKRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQ 187
Query: 264 TAETLTMDYHRGL--GIEARIARIFNTYGPRM----CID---DG--RVVSNFVAQALRKE 312
E L Y G G+E I R FN GPRM ID +G RV++ F LR+E
Sbjct: 188 LIERLI--YAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRRE 245
Query: 313 PLTVYGDGKQTRSFQFVSDLVEGLIRLME-----GDHVGPFNLGNP-GEFTMLELAEVVQ 366
PL + G+ R+F ++ D +E ++ ++E H+ FN+GNP E T+ +LAE++
Sbjct: 246 PLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHI--FNVGNPNNEVTVRQLAEMMT 303
Query: 367 EI--------------IDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTL 407
E+ +D +++ EF DD KR PD+T + LGW P+ +L
Sbjct: 304 EVYAKVSGEPALEEPTVDVSSK-EFYGEGYDDSDKRIPDMTIINKQLGWNPKTSL 357
|
Length = 386 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 79/293 (26%), Positives = 125/293 (42%), Gaps = 45/293 (15%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTG-KKDNL----IHHFGNPR--FELIR 169
I+VTGGAGF+GS+LV L +RG ++VVDN G K NL I + + + +R
Sbjct: 2 IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLKIADYIDKDDFKDWVR 61
Query: 170 HDVVEPILLEVDQIYHL-ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228
+++ I+H AC + + + N T +L RF+ S
Sbjct: 62 KGDENF---KIEAIFHQGACSDTTET---DGKYMMDNNYQYTKELLHYCLEKKIRFIYAS 115
Query: 229 TSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD---YHRGLGIEARIA-- 283
++ VYG+ + N+ P+ V Y K L D G + +++
Sbjct: 116 SAAVYGNGSLGFAEDIETPNLRPLNV---YGYSK-----LLFDQWARRHGKEVLSQVVGL 167
Query: 284 RIFNTYGP------RMCIDDGRVVSNFVAQALRKEPLTV------YGDGKQTRSFQFVSD 331
R FN YGP RM VV + Q E + + Y DG+Q R F +V D
Sbjct: 168 RYFNVYGPREYHKGRM----ASVVFHLFNQIKAGEKVKLFKSSDGYADGEQLRDFVYVKD 223
Query: 332 LVEGLIRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED 383
+V+ + +E V G FN+G + +LA + + + +IE+ ED
Sbjct: 224 VVKVNLFFLENPSVSGIFNVGTGRARSFNDLASATFKALGKEVKIEYIDFPED 276
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 83/322 (25%), Positives = 130/322 (40%), Gaps = 41/322 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
+ILVTG G VGS +V L RG +V F K+ +L + V
Sbjct: 1 KILVTGHRGLVGSAIVRVLARRGYENVV----FRTSKE----------LDLTDQEAVRAF 46
Query: 177 LLEV--DQIYHLACPA---SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR---FLLTS 228
+ D + HLA A V P ++ N++ N++ A R G + FL +S
Sbjct: 47 FEKEKPDYVIHLA--AKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVKKLVFLGSS 104
Query: 229 TSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF-N 287
Y D P E+ P Y KR L Y + G + I+ + N
Sbjct: 105 CI--YPDLAPQPIDESDLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQYGCDY-ISVMPTN 161
Query: 288 TYGPRMCIDDGRVVSNFVAQALRK---------EPLTVYGDGKQTRSFQFVSDLVEGLIR 338
YGP D S+ + +RK + +TV+G G R F + DL ++
Sbjct: 162 LYGPHDNFDPEN--SHVIPALIRKFHEAKLRGGKEVTVWGSGTPRREFLYSDDLARAIVF 219
Query: 339 LME-GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQ 397
L+E D N+G+ E ++ ELAE + E++ I F + D ++ D++K +
Sbjct: 220 LLENYDEPIIVNVGSGVEISIRELAEAIAEVVGFKGEIVFDTSKPDGQPRKLLDVSKLRA 279
Query: 398 LLGWEPRVTLRKGLPLMVADFR 419
LGW P L +G+ +
Sbjct: 280 -LGWFPFTPLEQGIRETYEWYL 300
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 82/335 (24%), Positives = 141/335 (42%), Gaps = 47/335 (14%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV-- 172
++L+ G GF+G HL R+++ D V +D + D L +PR D+
Sbjct: 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM----QTDRLGDLVNHPRMHFFEGDITI 57
Query: 173 ----VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228
+E + + D I L A+P Y P++ + + L ++ A + G + S
Sbjct: 58 NKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPS 117
Query: 229 TSEVYG----DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIAR 284
TSEVYG + + +G +N R Y K+ + + Y G+ + R
Sbjct: 118 TSEVYGMCPDEEFDPEASPLVYGPINK--PRWIYACSKQLMDRVIWAYGMEEGLNFTLFR 175
Query: 285 IFNTYGPRMCIDD--------GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336
FN GP + D RVV+ F+ +R EP+++ G Q R+F + D ++ L
Sbjct: 176 PFNWIGPGL--DSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDAL 233
Query: 337 IRLME---GDHVGP-FNLGNPG-EFTMLELAE----VVQEIID-----RNARI------E 376
++++E G G +N+GNP ++ ELA + E + + ++
Sbjct: 234 MKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGA 293
Query: 377 FRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
+ D R P I Q LGW P+ T+ L
Sbjct: 294 YYGKGYQDVQNRVPKIDNTMQELGWAPKTTMDDAL 328
|
Length = 347 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 4e-25
Identities = 91/319 (28%), Positives = 150/319 (47%), Gaps = 40/319 (12%)
Query: 118 ILVTGGAGFVGSHLVDRLMDR--GDSVIVVD--NYFTGKKDNLIHHFGNPRFELIRHDVV 173
IL+TG AGF+ SH+ +RL+ ++V+D +Y + K NL +P F+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLK-NLNPSKSSPNFKFVKGDIA 67
Query: 174 EPILL-------EVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVGA--R 223
L+ +D I H A + V F N + K N+ GT +L K G R
Sbjct: 68 SADLVNYLLITEGIDTIMHFAA-QTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRR 126
Query: 224 FLLTSTSEVYGDPLQHPQAETYWGNV--------NPIGVRSCYDEGKRTAETLTMDYHRG 275
F+ ST EVYG+ + GN NP Y K AE L M Y R
Sbjct: 127 FIHVSTDEVYGE----TDEDADVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRS 176
Query: 276 LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
G+ R N YGP + +++ F+ A++ +PL ++GDG RS+ + D+ E
Sbjct: 177 YGLPVITTRGNNVYGPNQFPE--KLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEA 234
Query: 336 L-IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEI--IDRNARIEFRPNTEDDPHKRKPDI 392
+ L +G+ +N+G E ++++A+ + ++ +D I+F N + + D
Sbjct: 235 FEVVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDD 294
Query: 393 TKAKQLLGWEPRVTLRKGL 411
K K+ LGW+ R + +GL
Sbjct: 295 QKLKK-LGWQERTSWEEGL 312
|
Length = 668 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 9e-25
Identities = 91/327 (27%), Positives = 144/327 (44%), Gaps = 37/327 (11%)
Query: 117 RILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVVE 174
+IL+TGGAGF+GS LV +++ D+V+VVD + G +L + RF + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 175 PILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA---------- 217
L D + HLA + P I+TN+VGT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 218 KRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
K+ RF ST EVYGD H + ++ P S Y K +++ L + R G
Sbjct: 123 KKSAFRFHHISTDEVYGD--LH-STDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 278 IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337
+ I N YGP + +++ + AL +PL VYG+G+Q R + +V D L
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALY 237
Query: 338 RLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNAR------------IEFRPNTEDD 384
+ VG +N+G E L++ E + E+++ A I F +
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGH 297
Query: 385 PHKRKPDITKAKQLLGWEPRVTLRKGL 411
+ D +K + LGW P+ T G+
Sbjct: 298 DLRYAIDASKIARELGWLPQETFESGM 324
|
Length = 355 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-24
Identities = 87/332 (26%), Positives = 144/332 (43%), Gaps = 64/332 (19%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
+++L+TGGAG +GSHL++ L++RG V+V+DN+ TG++++L H P ++ + +
Sbjct: 1 MKVLITGGAGQIGSHLIEHLLERGHQVVVIDNFATGRREHLPDH---PNLTVVEGSIADK 57
Query: 176 ILLEVDQIYHLACPASPVH----YKFNP---VKTIKTNVVGTLNMLGLAKRVGA-RFLLT 227
L VD+++ P + VH YK +P + TNVVG N++ AK+ G R +
Sbjct: 58 AL--VDKLFGDFKPDAVVHTAAAYK-DPDDWYEDTLTNVVGGANVVQAAKKAGVKRLIYF 114
Query: 228 STSEVYGDP-------LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEA 280
T+ YG L HP+A S Y K E Y G++
Sbjct: 115 QTALCYGLKPMQQPIRLDHPRAPPG----------SSYAISKTAGE----YYLELSGVDF 160
Query: 281 RIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY----GDGKQ------TRSFQFVS 330
R+ N GPR I PL + GK+ R F FV
Sbjct: 161 VTFRLANVTGPRNVIG----------------PLPTFYQRLKAGKKCFVTDTRRDFVFVK 204
Query: 331 DLVEGLIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNAR--IEFRPNTEDDPHK 387
DL + + ++G G ++ + + ++ EL + V E +D R +E DD
Sbjct: 205 DLARVVDKALDGIRGHGAYHFSSGEDVSIKELFDAVVEALDLPLRPEVEVVELGPDDVPS 264
Query: 388 RKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419
D ++ Q GW+ L + + +A +
Sbjct: 265 ILLDPSRTFQDFGWKEFTPLSETVSAALAWYD 296
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 94/347 (27%), Positives = 145/347 (41%), Gaps = 50/347 (14%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSV--IVVDNY-FTGKKDNLIH--HFGNPRFELIRHD 171
L+TG G GS+L + L+++G V I + F + +L H +PR L D
Sbjct: 4 VALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGD 63
Query: 172 VVEP-----ILLEV--DQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVG-- 221
+ + IL EV D+IY+LA S V F P T + +GTL +L + +G
Sbjct: 64 LTDSSNLLRILEEVQPDEIYNLAAQ-SHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEK 122
Query: 222 -ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEA 280
RF STSE+YG + PQ ET P RS Y K A +T++Y G+ A
Sbjct: 123 KTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGLFA 177
Query: 281 RIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLTVY-GDGKQTRSFQFVSDLVEGLIR 338
+FN P R ++ VA+ +Y G+ R + D VE +
Sbjct: 178 CNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWL 237
Query: 339 LMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED--------------- 383
+++ + + + ++ E E+ E++ +E+ D
Sbjct: 238 MLQQEEPDDYVIATGETHSVREFVELAFEMVGI--DLEWEGTGVDEKGVDAKTGKIIVEI 295
Query: 384 DPHKRKP--------DITKAKQLLGWEPRVTLRKGLPLMV-ADFRHR 421
DP +P D TKAK+ LGW P V+L + + MV AD
Sbjct: 296 DPRYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLEAA 342
|
Length = 345 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 5e-23
Identities = 82/330 (24%), Positives = 136/330 (41%), Gaps = 51/330 (15%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
I+VTGGAGF+GS+LV L +RG ++VVDN G K F N +I + +
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHK------FLNLADLVIADYIDKED 54
Query: 177 LLE---------VDQIYHL-ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 226
L+ ++ I+H AC + + + ++ N + +L G F+
Sbjct: 55 FLDRLEKGAFGKIEAIFHQGACSDT---TETDGEYMMENNYQYSKRLLDWCAEKGIPFIY 111
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIA--R 284
S++ YGD + + Y K + + A++ R
Sbjct: 112 ASSAATYGD-----GEAGFREGRELERPLNVYGYSKFLFDQYVRRRVLPEALSAQVVGLR 166
Query: 285 IFNTYGPR------MCIDDGRVVSNFVAQALRKEPLTV------YGDGKQTRSFQFVSDL 332
FN YGPR M V + Q + + + DG+Q R F +V D+
Sbjct: 167 YFNVYGPREYHKGKM----ASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDV 222
Query: 333 VEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHK----R 388
V+ + L+E G FNLG + +LA+ V + + ++ +IE+ P E +
Sbjct: 223 VDVNLWLLENGVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGRYQYFT 282
Query: 389 KPDITKAKQLLGWEPRVTLRKGLPLMVADF 418
+ DITK + + P TL +G V D+
Sbjct: 283 QADITKLRAAGYYGPFTTLEEG----VKDY 308
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 2e-22
Identities = 90/335 (26%), Positives = 146/335 (43%), Gaps = 47/335 (14%)
Query: 116 LRILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVV 173
++ILVTGGAGF+GS +V ++ + DSV+ VD + G ++L + R+ D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADIC 60
Query: 174 EPILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA--------- 217
+ L+ D + HLA + P I+TN+VGT +L A
Sbjct: 61 DRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDE 120
Query: 218 -KRVGARFLLTSTSEVYGDPLQHP------QAETYWGNVNPIGVRSCYDEGKRTAETLTM 270
K+ RF ST EVYGD L HP + + S Y K +++ L
Sbjct: 121 DKKNAFRFHHISTDEVYGD-LPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 271 DYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330
+ R G+ + N YGP + +++ + AL +PL +YG G Q R + +V
Sbjct: 180 AWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 331 DLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT-------- 381
D L +++ G +N+G E L++ + +++D E P
Sbjct: 238 DHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLD-----EIVPKATSYREQIT 292
Query: 382 --EDDP-HKRK--PDITKAKQLLGWEPRVTLRKGL 411
D P H R+ D +K + LGW+P+ T G+
Sbjct: 293 YVADRPGHDRRYAIDASKISRELGWKPQETFESGI 327
|
Length = 352 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 8e-22
Identities = 93/342 (27%), Positives = 142/342 (41%), Gaps = 55/342 (16%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVI-------VVDNYF-TGKKDNLI-HHFGNPRFEL 167
R+LVTG GF GS L L + G VI N F DN I G+ R
Sbjct: 6 RVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNKISSTRGDIRDL- 64
Query: 168 IRHDVVEPILLEV--DQIYHLACPASPV---HYKFNPVKTIKTNVVGTLNMLGLAKRVGA 222
+ + + E + ++HLA A P+ YK +PV+T +TNV+GT+N+L + G+
Sbjct: 65 ---NALREAIREYEPEIVFHLA--AQPLVRLSYK-DPVETFETNVMGTVNLLEAIRETGS 118
Query: 223 --RFLLTSTSEVYGDPLQHPQAETYWGNV--NPIGVRSCYDEGKRTAETLTMDYHR---- 274
+ ++ + Y + E WG +P+G Y K AE + Y
Sbjct: 119 VKAVVNVTSDKCYEN------KEWGWGYRENDPLGGHDPYSSSKGCAELIISSYRNSFFN 172
Query: 275 -----GLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329
GI AR N G +D R+V + + E + + R +Q V
Sbjct: 173 PENYGKHGIAIASARAGNVIGGGDWAED-RIVPDCIRAFEAGERVIIRNP-NAIRPWQHV 230
Query: 330 SDLVEGLIRLMEGDH------VGPFNLGNPGE--FTMLELAEVVQEIIDRNARIEFRPNT 381
+ + G + L E + +N G E T+LEL E + +AR + +
Sbjct: 231 LEPLSGYLLLAEKLYERGEEYAEAWNFGPDDEDAVTVLELVEAMARYWGEDARWD--LDG 288
Query: 382 EDDPHKR---KPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
PH+ K D +KAK +LGW PR L + L VA ++
Sbjct: 289 NSHPHEANLLKLDCSKAKTMLGWRPRWNLEETLEFTVAWYKE 330
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (230), Expect = 1e-20
Identities = 86/319 (26%), Positives = 143/319 (44%), Gaps = 29/319 (9%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL------IHHFGNPRFELIRH 170
R L+TG AGF+GS L++ L+ +VI +DN+ TG + NL + RF I+
Sbjct: 17 RWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQG 76
Query: 171 DV-----VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARF 224
D+ + VD + H A S +P+ T N+ G LNML A+ + F
Sbjct: 77 DIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSF 136
Query: 225 LLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIAR 284
++S YGD P+ E G P+ S Y K E + R A R
Sbjct: 137 TYAASSSTYGDHPDLPKIEERIG--RPL---SPYAVTKYVNELYADVFARSYEFNAIGLR 191
Query: 285 IFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG-LIRLME 341
FN +G R + V+ ++ L+ EP+ + GDG +R F ++ ++++ L+
Sbjct: 192 YFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATT 251
Query: 342 GDHVGP---FNLGNPGEFTMLELAEVVQEIID--RNARIEFRPNTED----DPHKRKPDI 392
D +N+ ++ EL ++++ ++ RN + P +D D + DI
Sbjct: 252 NDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADI 311
Query: 393 TKAKQLLGWEPRVTLRKGL 411
TK K L +EP +++GL
Sbjct: 312 TKIKTFLSYEPEFDIKEGL 330
|
Length = 348 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 5e-19
Identities = 88/336 (26%), Positives = 144/336 (42%), Gaps = 46/336 (13%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVV 173
+R+LVTGG+G++GSH +L+ G V+++DN K+ L I G + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 174 EPILLEVDQIYHLACPASPVHYK---------FNPVKTIKTNVVGTLNMLGLAKRVGAR- 223
LL +I H + +H+ P++ NV GTL ++ + +
Sbjct: 61 NEALL--TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 224 FLLTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAETLTMDYHRGLGIEARI 282
+ +S++ VYGD + P E++ P G +S Y + K E + D + + I
Sbjct: 119 LIFSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKA-QPDWSI 172
Query: 283 A--RIFNTYGPR----MCIDDGRVVSN---FVAQAL--RKEPLTVYG------DGKQTRS 325
A R FN G M D + +N ++AQ R++ L ++G DG R
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 326 FQFVSDLVEGLIRLMEGDHVGP----FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT 381
+ V DL +G + ME P +NLG ++L++ + + F P
Sbjct: 233 YIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 382 EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417
E D D +KA + L W RVT + L M D
Sbjct: 293 EGDLPAYWADASKADRELNW--RVT--RTLDEMAQD 324
|
Length = 338 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 80/345 (23%), Positives = 116/345 (33%), Gaps = 71/345 (20%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL 177
ILVTG GF+GS+LV L+ +G V + E++ D+ +
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRA----LVRSGSDA-VLLDGLPVEVVEGDLTDAAS 55
Query: 178 L-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE 231
L D+++HLA S K + +TNV GT N+L A G R + TS+
Sbjct: 56 LAAAMKGCDRVFHLAAFTSL-WAKDRK-ELYRTNVEGTRNVLDAALEAGVRRVVHTSSIA 113
Query: 232 VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARI---ARIFNT 288
G P ET N + Y K AE ++ G++ I + +F
Sbjct: 114 ALGGPPDGRIDET--TPWNERPFPNDYYRSKLLAELEVLEAAAE-GLDVVIVNPSAVFGP 170
Query: 289 YGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPF 348
G V +++ L Y G SF V D+ EG I ME
Sbjct: 171 GDEGPTS-TGLDVLDYLNGKLP-----AYPPGGT--SFVDVRDVAEGHIAAMEK------ 216
Query: 349 NLGNPGE--------FTMLELAEVVQEIIDRNARIEFRPN----------------TEDD 384
G GE + +L E + EI P T
Sbjct: 217 --GRRGERYILGGENLSFKQLFETLAEITGVKPPRRTIPPWLLKAVAALSELKARLTGKP 274
Query: 385 P-----------HKRKPDITKAKQLLGWEPRVTLRKGLPLMVADF 418
P KA++ LG+ PR L + L +A
Sbjct: 275 PLLTPRTARVLRRNYLYSSDKARRELGYSPR-PLEEALRDTLAWL 318
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 9e-18
Identities = 88/340 (25%), Positives = 138/340 (40%), Gaps = 67/340 (19%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSV--IV--VDNYFTGKKDNLIH--HFGNPRFELIRH-- 170
L+TG G GS+L + L+ +G V I+ N+ T + D++ H R +L H
Sbjct: 10 LITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKL--HYG 67
Query: 171 ------------DVVEPILLEVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNML--- 214
D ++P D++Y+LA S V F P T G L +L
Sbjct: 68 DLSDASSLRRWLDDIKP-----DEVYNLAA-QSHVAVSFEMPDYTADVVATGALRLLEAV 121
Query: 215 ---GLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD 271
G ++ +SE+YG PQ+ET P RS Y K A T++
Sbjct: 122 RLHGQETGRQIKYYQAGSSEMYGS-TPPPQSET-----TPFHPRSPYAVAKVAAHWYTVN 175
Query: 272 YHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFV------AQALRKEPL--TVY-GDGKQ 322
Y G+ A +FN PR G NFV A K L ++ G+
Sbjct: 176 YREAYGLFACNGILFNHESPRR----GE---NFVTRKITRAVGRIKVGLQKKLFLGNLDA 228
Query: 323 TRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIE------ 376
+R + F D VE + +++ + + + T+ E E + N +
Sbjct: 229 SRDWGFAGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPR 288
Query: 377 -FRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415
FRP E D K D +KA+++LGW+P+V + + +MV
Sbjct: 289 YFRP-AEVD--NLKGDASKAREVLGWKPKVGFEQLVKMMV 325
|
Length = 340 |
| >gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-17
Identities = 89/331 (26%), Positives = 150/331 (45%), Gaps = 45/331 (13%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDV--- 172
R+L+ G GF+G+HL +RL+ + + Y + I F G+PRF + D+
Sbjct: 317 RVLILGVNGFIGNHLTERLLRDDNYEV----YGLDIGSDAISRFLGHPRFHFVEGDISIH 372
Query: 173 ---VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229
+E + + D + L A+P+ Y NP++ + + L ++ + R + ST
Sbjct: 373 SEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPST 432
Query: 230 SEVYG---DPLQHPQAETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGLGIEARIARI 285
SEVYG D + +T V PI R Y K+ + + Y G+ + R
Sbjct: 433 SEVYGMCTDK--YFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRP 490
Query: 286 FNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339
FN GPR+ I R ++ + + P+ + GKQ R F + D +E L R+
Sbjct: 491 FNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRI 550
Query: 340 MEG-DHVGP---FNLGNP-GEFTMLELAEVVQEIIDRNA-RIEFRP-------------- 379
+E D+ N+GNP E ++ ELAE++ +++ R F P
Sbjct: 551 IENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYG 610
Query: 380 -NTEDDPHKRKPDITKAKQLLGWEPRVTLRK 409
+D H RKP I A++LL WEP++ +++
Sbjct: 611 KGYQDVEH-RKPSIRNARRLLDWEPKIDMQE 640
|
Length = 660 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-17
Identities = 94/334 (28%), Positives = 146/334 (43%), Gaps = 66/334 (19%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY-------------FTGKK-DNLIHHFGN 162
ILVTGGAG++GSH V +L+ G V+V+DN G DNL+ H +
Sbjct: 7 TILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVD 66
Query: 163 PRFELIRH-DVVEPILLE--VDQIYHLA-------CPASPVHYKFNPVKTIKTNVVGTLN 212
+R + +E + D + H A A P+ Y N N+VGT+N
Sbjct: 67 -----LRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDN-------NLVGTIN 114
Query: 213 MLGLAKRVGARFLLTSTS-EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD 271
+L + + G + L+ S+S VYG P + P E + P+ + Y K E + D
Sbjct: 115 LLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEF-----PLSATNPYGRTKLFIEEICRD 169
Query: 272 YHRGLGIEARIA--RIFNTYG--PRMCI-DDGRVVSN----FVAQ-AL-RKEPLTVYG-- 318
H E +I R FN G P I +D + + N +V Q A+ R+ LTV+G
Sbjct: 170 IHASDP-EWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGND 228
Query: 319 ----DGKQTRSFQFVSDLVEG----LIRLMEGDHVG--PFNLGNPGEFTMLELAEVVQEI 368
DG R + V DL +G L +L +G +NLG ++LE+ ++
Sbjct: 229 YPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKA 288
Query: 369 IDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWE 402
+ ++ P D + KA++ LGW+
Sbjct: 289 SGKKIPLKLAPRRPGDAEEVYASTEKAEKELGWK 322
|
Length = 352 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 3e-17
Identities = 63/276 (22%), Positives = 92/276 (33%), Gaps = 52/276 (18%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT-GKKDNLIHHFGNPRFELIRHDVVEP 175
+IL+ GG F+G LV+ L+ G V V F G+ E I D +
Sbjct: 2 KILIIGGTRFIGKALVEELLAAGHDVTV----FNRGRTKP----DLPEGVEHIVGDRNDR 53
Query: 176 ILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228
LE D + +P L K +++ S
Sbjct: 54 DALEELLGGEDFDVVVDT-IAYTPRQ---------------VERALDAFKGRVKQYIFIS 97
Query: 229 TSEVYGDPLQH-----PQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIA 283
++ VY P + P E ++ Y GKR AE + ++ I
Sbjct: 98 SASVYLKPGRVITESTPLREPDAVGLSDPWD---YGRGKRAAEDVLIEAA---AFPYTIV 151
Query: 284 RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF--VSDLVEGLIRLME 341
R YGP D ++ F + R P+ V GDG QF V DL L+
Sbjct: 152 RPPYIYGPG---DYTGRLAYFFDRLARGRPILVPGDG--HSLVQFIHVKDLARALLGAAG 206
Query: 342 GDHV--GPFNLGNPGEFTMLELAEVVQEIIDRNARI 375
G FN+ T EL E + + + A I
Sbjct: 207 NPKAIGGIFNITGDEAVTWDELLEACAKALGKEAEI 242
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 72/323 (22%), Positives = 109/323 (33%), Gaps = 65/323 (20%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
++IL+TG G +G+ L L + VI D ++ D V
Sbjct: 1 MKILITGANGQLGTELRRALPGEFE-VIATD---------------RAELDITDPDAVLE 44
Query: 176 ILLEV--DQIYHLA------CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 227
++ E D + + A S P N G N+ A VGAR +
Sbjct: 45 VIRETRPDVVINAAAYTAVDKAES------EPELAFAVNATGAENLARAAAEVGARLVHI 98
Query: 228 STSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
ST V+ P ET NP+ V Y K E I R + ++
Sbjct: 99 STDYVFDGEKGGPYKET--DTPNPLNV---YGRSKLAGEEAVRAAGPRHLI-LRTSWVYG 152
Query: 288 TYGPRMCIDDGRVVSNFVAQALR--KEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV 345
YG +NFV LR KE + Q S + DL + ++ L+E +
Sbjct: 153 EYG-----------NNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEKE 201
Query: 346 GP-FNLGNPGEFTMLELAEV----------VQEIIDRNARIEFRPNTEDDPHKRKPDITK 394
G ++L N GE + E A+ V E I P P D K
Sbjct: 202 GGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAE----YPTPAKRPANSSLDTKK 257
Query: 395 AKQLLGWEPRVTLRKGLPLMVAD 417
++ G R+ L ++ +
Sbjct: 258 LEKAFGLSLP-EWREALKALLDE 279
|
Length = 281 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 8e-16
Identities = 79/275 (28%), Positives = 108/275 (39%), Gaps = 57/275 (20%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFTGK---KDNLIHHFGNPRFELIRHDV 172
ILVTGGAG +GS LV +++ G +IV D L F + + I DV
Sbjct: 4 TILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFIIGDV 63
Query: 173 VEPILL-------EVDQIYHLACPASPVHYK------FNPVKTIKTNVVGTLNMLGLAKR 219
+ L D ++H A K NP + IKTNV+GT N++ A
Sbjct: 64 RDKERLRRAFKERGPDIVFHAAA------LKHVPSMEDNPEEAIKTNVLGTKNVIDAAIE 117
Query: 220 VG-ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG- 277
G +F+ ST + VNP+ V KR AE L + +
Sbjct: 118 NGVEKFVCISTDKA----------------VNPVNV---MGATKRVAEKLLLAKNEYSSS 158
Query: 278 IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS---DLV- 333
+ R N G R G V+ F Q + PLTV D TR F + DLV
Sbjct: 159 TKFSTVRFGNVLGSR-----GSVLPLFKKQIKKGGPLTVT-DPDMTRFFMTIPEAVDLVL 212
Query: 334 EGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEI 368
+ I G G F L +L+LAE + E+
Sbjct: 213 QACILGDGG---GIFLLDMGPPVKILDLAEALIEL 244
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 9e-16
Identities = 76/341 (22%), Positives = 121/341 (35%), Gaps = 63/341 (18%)
Query: 117 RILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFEL----IRH- 170
+LVTGG+GF G LV +L++R G V D G+ + + +P E I
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEA---LSAWQHPNIEFLKGDITDR 57
Query: 171 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTI-KTNVVGTLNMLGLAKRVGA-RFLLTS 228
+ VE L D ++H A+ V P + NV GT N+L +R G +F+ TS
Sbjct: 58 NDVEQALSGADCVFHT---AAIVP-LAGPRDLYWEVNVGGTQNVLDACQRCGVQKFVYTS 113
Query: 229 TSEVY--GDPLQHPQAETYWGNVNPIGVRS--CYDEGKRTAETLTMDYHRGLGIEARIAR 284
+S V G + + P Y E K AE + ++ + + R
Sbjct: 114 SSSVIFGGQNIHNGDETL------PYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCALR 167
Query: 285 IFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH 344
+GP D +V A + V+G G F +V +L I
Sbjct: 168 PAGIFGPG----DQGLVPILFEWAEKGLVKFVFGRGNNLVDFTYVHNLAHAHILAAAALV 223
Query: 345 VG------PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPN------------------ 380
G + + + M EL V + + +R + R +
Sbjct: 224 KGKTISGQTYFITDAEPHNMFELLRPVWKALGFGSRPKIRLSGPLAYCAALLSELVSFML 283
Query: 381 ----------TEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411
I KA++ LG+ PR + +GL
Sbjct: 284 GPYFVFSPFYVRALVTPMYFSIAKAQKDLGYAPRYSNEEGL 324
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-15
Identities = 89/350 (25%), Positives = 142/350 (40%), Gaps = 70/350 (20%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVV----DNYFTGKKDNLI---HHFGNPRFELIRHD 171
L+TG G GS+L + L+++G V + ++ T + +++ H+ R +L D
Sbjct: 4 LITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGD 63
Query: 172 VVEPILL-------EVDQIYHLACPASPVHYKFN-PVKTIKTNVVGTLNML------GLA 217
+ + L + +IY+LA S V F P T + +GTL +L GL
Sbjct: 64 LTDSSNLRRIIDEIKPTEIYNLAA-QSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLI 122
Query: 218 KRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
K V +F STSE+YG + PQ ET P RS Y K A +T++Y G
Sbjct: 123 KSV--KFYQASTSELYGKVQEIPQNET-----TPFYPRSPYAAAKLYAHWITVNYREAYG 175
Query: 278 IEARIARIFNTYGPRMCIDDGRVVSNFVAQ---------ALRKEPLTVYGDGKQTRSFQF 328
+ A +FN PR NFV + L + G+ R +
Sbjct: 176 LFAVNGILFNHESPRRG-------ENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGH 228
Query: 329 VSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED----- 383
D VE + +++ D + + ++ E EV E I + + ++ +
Sbjct: 229 AKDYVEAMWLMLQQDKPDDYVIATGETHSVREFVEVSFEYIGKT--LNWKDKGINEVGRC 286
Query: 384 ----------DPHKRKP--------DITKAKQLLGWEPRVTLRKGLPLMV 415
DP +P D TKAK+ LGW+P V+ K + MV
Sbjct: 287 KETGKVHVEIDPRYFRPTEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMV 336
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 89/386 (23%), Positives = 128/386 (33%), Gaps = 87/386 (22%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN-----------LIH------ 158
+++L+ GG G+ G L RG V +VDN + D IH
Sbjct: 1 MKVLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAW 60
Query: 159 --HFGNPRFELIRHDVVEPILL-------EVDQIYHLAC-PASP-----VHYKFNPVKTI 203
G E D + L E D + H A ++P + T
Sbjct: 61 KELTGK-TIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHA---NYTQ 116
Query: 204 KTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDP----LQHPQAETYWG----NVNPIG 253
NV+GTLN+L K + T YG P + + G P
Sbjct: 117 HNNVIGTLNLLFAIKEFDPDCHLVKLGTMGEYGTPNIDIPEGYITIEHNGRRDTLPYPKQ 176
Query: 254 VRSCYDEGKRTAETLTMDYHRGLGIEA---RIARIFNTYGPRMCIDD------------G 298
S Y K M + GI ++ T D+ G
Sbjct: 177 AGSWYHLSKVHDSHNIMFACKAWGIRITDLNQGVVYGTKTEETEADERLINRFDYDGVFG 236
Query: 299 RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTM 358
V++ F QA PLTVYG G QTR F + D V+ L +E N GE+ +
Sbjct: 237 TVLNRFCVQAAIGHPLTVYGKGGQTRGFISIRDTVQCLELALE-------NPAKAGEYRV 289
Query: 359 L----------ELAEVVQEI---IDRNARIEFRPN--TEDDPHKRKPDITKAKQLLGWEP 403
ELAE+V E + + ++E PN E + H TK LG EP
Sbjct: 290 FNQFTEQFSVGELAEMVAEAGSKLGLDVKVEHLPNPRVEAEEHYYNAKNTKLLD-LGLEP 348
Query: 404 RVTLRKGLPLMVAD---FRHRIFGDQ 426
L ++ + R+ +
Sbjct: 349 HYLSESLLDSILNFAVKYADRVDEKR 374
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 78/323 (24%), Positives = 122/323 (37%), Gaps = 49/323 (15%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSV-IVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
++LVTG GF+G LVD+L+ RG+ V I V N + ++ EL D
Sbjct: 1 KVLVTGANGFIGRALVDKLLSRGEEVRIAVRNAENAEPSVVLA-------ELPDIDSFTD 53
Query: 176 ILLEVDQIYHLACPASPVHYKFNPVKTI------KTNVVGTLNMLGLAKRVGA-RFLLTS 228
+ L VD + HLA + VH N K N T + A R G RF+ S
Sbjct: 54 LFLGVDAVVHLA---ARVH-VMNDQGADPLSDYRKVNTELTRRLARAAARQGVKRFVFLS 109
Query: 229 TSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNT 288
+ +V G+ + P + Y K AE ++ G+E I R
Sbjct: 110 SVKVNGEGTVGAPFDETD-PPAP---QDAYGRSKLEAERALLELGASDGMEVVILRPPMV 165
Query: 289 YGPRMCIDDGRVVSNF--VAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLM--EGDH 344
YGP V NF + + + + G K RS + +LV+ + +
Sbjct: 166 YGPG-------VRGNFARLMRLIDRGLPLPPGAVKNRRSLVSLDNLVDAIYLCISLPKAA 218
Query: 345 VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRP-----NTEDDPHKRKP--------- 390
G F + + + EL + ++ + + R+ P KR
Sbjct: 219 NGTFLVSDGPPVSTAELVDEIRRALGKPTRLLPVPAGLLRFAAKLLGKRAVIQRLFGSLQ 278
Query: 391 -DITKAKQLLGWEPRVTLRKGLP 412
D K + LGW P ++L +GL
Sbjct: 279 YDPEKTQNELGWRPPISLEEGLQ 301
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 85/348 (24%), Positives = 143/348 (41%), Gaps = 59/348 (16%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVI-------VVDNYFT--GKKDNLIHHFGNPR-FE 166
++LVTG GF GS L L++ G V N F + HFG+ R
Sbjct: 6 KVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAA 65
Query: 167 LIRHDV--VEPILLEVDQIYHLACPASPV---HYKFNPVKTIKTNVVGTLNMLGLAKRVG 221
+R + +P + ++HLA A P+ Y +P++T +TNV+GT+N+L + +G
Sbjct: 66 KLRKAIAEFKP-----EIVFHLA--AQPLVRKSYA-DPLETFETNVMGTVNLLEAIRAIG 117
Query: 222 ---ARFLLTSTSEVYGDPLQHPQAETYWG--NVNPIGVRSCYDEGKRTAETLTMDY---- 272
A +T + + Y + E WG +P+G Y K AE + Y
Sbjct: 118 SVKAVVNVT-SDKCYRN------DEWVWGYRETDPLGGHDPYSSSKACAELVIASYRSSF 170
Query: 273 -----HRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327
G+ I AR N G +D R++ + + + + + + TR +Q
Sbjct: 171 FGVANFHGIKIA--SARAGNVIGGGDWAED-RLIPDVIRAFSSNKIVIIR-NPDATRPWQ 226
Query: 328 FVSDLVEGLIRLME------GDHVGPFNLG--NPGEFTMLELAEVVQEIIDRNARIEFRP 379
V + + G + L E + G +N G ++EL E +
Sbjct: 227 HVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDD 286
Query: 380 NTEDDPHKR---KPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFG 424
+ + PH+ K D +KA+ LLGW PR L + + V ++ + G
Sbjct: 287 SDLNHPHEARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYKAWLRG 334
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 82/344 (23%), Positives = 124/344 (36%), Gaps = 89/344 (25%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
++L+TG +GFVG L +RL+ P LI DVV P
Sbjct: 2 KVLITGASGFVGQRLAERLLSDV-----------------------PNERLILIDVVSPK 38
Query: 177 -------------------LLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTL 211
L+E D ++HLA S + + + NV GT
Sbjct: 39 APSGAPRVTQIAGDLAVPALIEALANGRPDVVFHLAAIVSG-GAEADFDLGYRVNVDGTR 97
Query: 212 NMLGLAKRVGA--RFLLTSTSEVYGDPLQHP-QAETYWGNVNPIGVRSCYDEGKRTAETL 268
N+L ++ G RF+ TS+ VYG PL +P T ++P S Y K E L
Sbjct: 98 NLLEALRKNGPKPRFVFTSSLAVYGLPLPNPVTDHT---ALDPA---SSYGAQKAMCELL 151
Query: 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQA----LRKEPL----TVYGDG 320
DY R ++ R R+ P +C+ GR N A A + +EPL
Sbjct: 152 LNDYSRRGFVDGRTLRL-----PTVCVRPGR--PNKAASAFASTIIREPLVGEEAGLPVA 204
Query: 321 KQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNAR------ 374
+Q R + + + + + G + T+ L+ V E +
Sbjct: 205 EQLRYWL--KSVATAVANFVHAAELPAEKFGPRRDLTLPGLSVTVGEELRALIPVAGLPA 262
Query: 375 ---IEFRPNTEDDPHKRKP----DITKAKQLLGWEPRVTLRKGL 411
I F P+ E D T+A+ LG+ +L GL
Sbjct: 263 LMLITFEPDEEIKRIVFGWPTRFDATRAQS-LGFVADSSLAAGL 305
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 76/320 (23%), Positives = 123/320 (38%), Gaps = 55/320 (17%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG----KKDNLIH----HFGNPRFELI 168
+LVTG GF+ SH+V++L+ G V T K L N R E +
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVR-----GTVRSLSKSAKLKALLKAAGYNDRLEFV 55
Query: 169 RHDVVEPI---------LLEVDQIYHLACPASPVHYKFNPVKT--IKTNVVGTLNMLGLA 217
+V+ + L VD + H+ ASP + + I V GTLN+L A
Sbjct: 56 ---IVDDLTAPNAWDEALKGVDYVIHV---ASPFPFTGPDAEDDVIDPAVEGTLNVLEAA 109
Query: 218 KRVGA--RFLLTSTSEVYGDPLQHPQAETY----WGNVNPIGVRS--CYDEGKRTAETLT 269
K G+ R +LTS+ GDP + + W ++ Y K AE
Sbjct: 110 KAAGSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAA 169
Query: 270 MDY--HRGLGIEARIARIFNTY--GPRMCIDDGRVVSNFVAQ-ALRKEPLTVYGDGKQTR 324
++ E + I Y GP + D+ + + + K P
Sbjct: 170 WEFVKENKPKFE--LITINPGYVLGPSLLADELNSSNELINKLLDGKLP-----AIPPNL 222
Query: 325 SFQFVS--DLVEGLIRLME-GDHVGPFNLGNPGEFTMLELAEVVQEII-DRNARIEFRPN 380
F +V D+ + +R +E + G + + G F+ E+A++++E A PN
Sbjct: 223 PFGYVDVRDVADAHVRALESPEAAGQRFIVSAGPFSFQEIADLLREEFPQLTAPFPA-PN 281
Query: 381 TEDDPHKRKPDITKAKQLLG 400
K D K+++LLG
Sbjct: 282 PLMLSILVKFDNRKSEELLG 301
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 74/307 (24%), Positives = 120/307 (39%), Gaps = 31/307 (10%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL 178
V G G VGS +V +L G + +V+ + +L R VE
Sbjct: 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHKEL--------------DLTRQADVEAFFA 46
Query: 179 EVDQIY--HLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAKRVGAR---FLLTSTSEV 232
+ Y A +H P I+ N+ N++ A R G + FL +S +
Sbjct: 47 KEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSC--I 104
Query: 233 YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292
Y P ET P Y K + Y G +A N YGP
Sbjct: 105 YPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPH 164
Query: 293 --MCIDDGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG-DH 344
++ V+ + A+A + V+G G R F V DL + ++ LM
Sbjct: 165 DNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYSG 224
Query: 345 VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPR 404
N+G+ E T+ ELAE+V+E++ + + + D ++ D +K + LGW+P+
Sbjct: 225 AEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLRS-LGWDPK 283
Query: 405 VTLRKGL 411
+L+ GL
Sbjct: 284 FSLKDGL 290
|
Length = 306 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 57/269 (21%), Positives = 91/269 (33%), Gaps = 44/269 (16%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV----- 172
V G +G +G + L RG V +V +G K P E++ D
Sbjct: 2 AHVLGASGPIGREVARELRRRGWDVRLVSR--SGSKLAW-----LPGVEIVAADAMDASS 54
Query: 173 VEPILLEVDQIYHLACPASPV-HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231
V D IYH A PA F P+ N++ A+ GA+ +L
Sbjct: 55 VIAAARGADVIYHCANPAYTRWEELFPPLME---------NVVAAAEANGAKLVLPGNVY 105
Query: 232 VYGDPLQHPQAETYWGNVNPIGVRSCYDEGK-RTA-ETLTMDYHRGLGIEARIARIFNTY 289
+YG P E P +G+ R E + H I A I R + Y
Sbjct: 106 MYGPQAGSPITEDT--PFQPTT-----RKGRIRAEMEERLLAAHAKGDIRALIVRAPDFY 158
Query: 290 GPRMCIDDGRVVSNF----VAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV 345
GP ++++ + L+ + G+ + ++ D+ L+ L E
Sbjct: 159 GP-------GAINSWLGAALFAILQGKTAVFPGNLDTPHEWTYLPDVARALVTLAEEPDA 211
Query: 346 --GPFNLGNPGEFTMLELAEVVQEIIDRN 372
++L G T EL + R
Sbjct: 212 FGEAWHLPGAGAITTRELIAIAARAAGRP 240
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 79/295 (26%), Positives = 123/295 (41%), Gaps = 66/295 (22%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVV---DNY--FTGKKDNLIHHFGNP--RFEL-- 167
+LVTGG G +GS L +++ I++ D Y + + L F RF +
Sbjct: 252 TVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDME-LREKFPELKLRFYIGD 310
Query: 168 IR-HDVVEPIL--LEVDQIYHLACPASPVHYK------FNPVKTIKTNVVGTLNMLGLAK 218
+R D VE + +VD ++H A K +NP + IKTNV+GT N+ A
Sbjct: 311 VRDRDRVERAMEGHKVDIVFHAAA------LKHVPLVEYNPEEAIKTNVLGTENVAEAAI 364
Query: 219 RVG-ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR-GL 276
+ G +F+L ST + VNP V KR AE L +R
Sbjct: 365 KNGVKKFVLISTDKA----------------VNPTNV---MGATKRLAEKLFQAANRNVS 405
Query: 277 GIEARIA--RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334
G R R N G R G V+ F Q PLTV D TR F + + V+
Sbjct: 406 GTGTRFCVVRFGNVLGSR-----GSVIPLFKKQIAEGGPLTV-TDPDMTRFFMTIPEAVQ 459
Query: 335 GLIR---LMEGDHVGPFNLGNPGEFTMLELAEVVQEII----DRNARIEF---RP 379
+++ + +G + ++G P +++LA+ + E+ + I+ RP
Sbjct: 460 LVLQAGAIAKGGEIFVLDMGEP--VKIIDLAKAMIELAGQTPPGDIAIKIIGLRP 512
|
Length = 588 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 72/300 (24%), Positives = 121/300 (40%), Gaps = 39/300 (13%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
+IL+TG G +G LV L +RG VI + +L D VE
Sbjct: 1 KILITGATGMLGRALVRLLKERGYEVIGTGR----------SRASLFKLDLTDPDAVEEA 50
Query: 177 LLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY- 233
+ + D I + A + +P + NV+ N+ AK VGAR + ST V+
Sbjct: 51 IRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGARLIHISTDYVFD 110
Query: 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRM 293
G + P E NP+ V Y + K E ++ + I R YG
Sbjct: 111 GK--KGPYKEE--DAPNPLNV---YGKSKLLGEVAVLNANPR----YLILRTSWLYGELK 159
Query: 294 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME-GDHVGPFNLGN 352
+ V + A ++ + V D Q S + +DL + ++ L+E G ++L N
Sbjct: 160 --NGENFVEWMLRLAAERKEVNVVHD--QIGSPTYAADLADAILELIERNSLTGIYHLSN 215
Query: 353 PGEFTMLELAEVVQEIID-RNARIEFRPNTEDDPH--KRKP-----DITKAKQLLGWEPR 404
G + E A+++ + + + I +P T + R+P D +K ++L G +P
Sbjct: 216 SGPISKYEFAKLIADALGLPDVEI--KPITSSEYPLPARRPANSSLDCSKLEELGGIKPP 273
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 49/165 (29%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV---- 172
LVTGG GF+G H+V L+ G+ V V D F+ + + I DV
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQVITY--IEGDVTDKQ 58
Query: 173 -VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL-TSTS 230
+ L D + H A V K +K NV GT N+L + G R L+ TS+
Sbjct: 59 DLRRALQGSDVVIHTAA-IIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSM 117
Query: 231 EV-----YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTM 270
EV YG P+ + T + + Y E K AE L +
Sbjct: 118 EVVGPNSYGQPIVNGDETTPY----ESTHQDPYPESKALAEKLVL 158
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 75/325 (23%), Positives = 115/325 (35%), Gaps = 64/325 (19%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL 177
ILVTG G +G L L +RG V+ +D P +L + V ++
Sbjct: 1 ILVTGANGQLGRELTRLLAERGVEVVALD---------------RPELDLTDPEAVAALV 45
Query: 178 LEV--DQIYHLACPA-SPVH-YKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233
E D + + A A + V + P N +G N+ GA + ST V+
Sbjct: 46 REARPDVVVNAA--AYTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYVF 103
Query: 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYH-RGLGIEARIARIFNTYGPR 292
P E P+ V Y K E + + R L + R A ++ YG
Sbjct: 104 DGAKGGPYRED--DPTGPLNV---YGRTKLAGEQAVLAANPRHLIL--RTAWVYGEYGN- 155
Query: 293 MCIDDGRVVSNFVA----QALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP- 347
NFV A ++ L V D Q S DL + L+ L+ GP
Sbjct: 156 ----------NFVKTMLRLAAERDELRVVDD--QLGSPTSARDLADALLALIRKRLRGPA 203
Query: 348 ----FNLGNPGEFTMLELAEVVQEIIDRNAR--IEFRP-NTEDDPHK-RKP-----DITK 394
++L GE + + A + I D RP T + P R+P D +K
Sbjct: 204 LAGTYHLAGSGETSWYDFA---RAIFDEAGADGGRVRPIPTAEYPTPARRPANSVLDTSK 260
Query: 395 AKQLLGWEPRVTLRKGLPLMVADFR 419
+ G R+ L ++ +
Sbjct: 261 LEATFGIPLP-DWREALAEVLDELL 284
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 75/308 (24%), Positives = 114/308 (37%), Gaps = 54/308 (17%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TG G +G LV +L G V+ + + +L + +E +
Sbjct: 1 RILITGANGQLGRELVQQLSPEGRVVVALT---------------RSQLDLTDPEALERL 45
Query: 177 LLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234
L + D + + A + +P K N + N+ A R GAR + ST V+
Sbjct: 46 LRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFD 105
Query: 235 DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMC 294
+ P E NP+ V Y + K E R G A I R YG
Sbjct: 106 GEGKRPYRED--DATNPLNV---YGQSKLAGEQAV----RAAGPNALIVRTSWLYG---- 152
Query: 295 IDDGRVVSNFVAQALRK----EPLTVYGDGKQTRSFQFVSDLVEGLIRLME--GDHVGPF 348
G NFV LR E L V D Q S + DL + L++ G +
Sbjct: 153 ---GGGGRNFVRTMLRLAGRGEELRVVDD--QIGSPTYAKDLARVIAALLQRLARARGVY 207
Query: 349 NLGNPGEFTMLELAEVVQEIIDRNARIEFRPN------TEDDPH-KRKP-----DITKAK 396
+L N G+ + E A+ + E + + P +++ P R+P D TK
Sbjct: 208 HLANSGQCSWYEFAQAIFEEAGADG-LLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLV 266
Query: 397 QLLGWEPR 404
+ LG
Sbjct: 267 KTLGTPLP 274
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 28/139 (20%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH------FGNPRFELIRHD 171
+ VTGG GF+G HLV RL++ G V+V+ + H R ++ D
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVR---SESLGEAHERIEEAGLEADRVRVLEGD 57
Query: 172 VVEPIL-----------LEVDQIYHLACPASPVHYKFN--PVKTIKTNVVGTLNMLGLAK 218
+ +P L +VD + H A AS Y F +TN+ GT ++L LA
Sbjct: 58 LTQPNLGLSAAASRELAGKVDHVIHCA--AS---YDFQAPNEDAWRTNIDGTEHVLELAA 112
Query: 219 RVGA-RFLLTSTSEVYGDP 236
R+ RF ST+ V G+
Sbjct: 113 RLDIQRFHYVSTAYVAGNR 131
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 33/203 (16%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVV--------DNYFTGKKDNLIHHFGN------ 162
+L+TG GF+G++L+ L+ R + + + DNL + N
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 163 -PRFELIRHDVVEPIL-----------LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGT 210
R +++ D+ +P L EVD I H A+ V++ + + NV+GT
Sbjct: 61 LSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIH--NGAN-VNWVYPYEELKPANVLGT 117
Query: 211 LNMLGLA-KRVGARFLLTSTSEVYGDPLQHPQAETYWGN--VNPIGVRSCYDEGKRTAET 267
+L LA ST V+ + + + + G+ + Y + K AE
Sbjct: 118 KELLKLAATGKLKPLHFVSTLSVFSAEEYNALDDEESDDMLESQNGLPNGYIQSKWVAEK 177
Query: 268 LTMDYHRGLGIEARIARIFNTYG 290
L + G+ I R N +G
Sbjct: 178 LLREAAN-RGLPVAIIRPGNIFG 199
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 62/223 (27%), Positives = 91/223 (40%), Gaps = 57/223 (25%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVV---DNYFTGKKDN----LIHHFGNP--RFEL- 167
+LVTGG G +GS L +++ I++ D + K L + +P RF +
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEF---KLYEIRQELRQEYNDPKLRFFIG 57
Query: 168 -IR-HDVVEPIL--LEVDQIYHLACPASPVHYK------FNPVKTIKTNVVGTLNMLGLA 217
+R + +E + VD ++H A K +NP++ IKTNV+GT N+ A
Sbjct: 58 DVRDRERLERAMEQHGVDTVFHAAA------LKHVPLVEYNPMEAIKTNVLGTENVAEAA 111
Query: 218 KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL 276
G +F+L ST + VNP V KR AE L +R
Sbjct: 112 IENGVEKFVLISTDKA----------------VNPTNV---MGATKRLAEKLFQAANRES 152
Query: 277 GIEA-RIA--RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTV 316
G R + R N G R G V+ F Q P+TV
Sbjct: 153 GSGKTRFSVVRFGNVLGSR-----GSVIPLFKKQIANGGPVTV 190
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 36/215 (16%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDS---VIVVDNYFTGKKDNLIHHF----GNPRFELIRHD 171
LVTGG GF+G H++ L++R + + V+D F G LI HF G I D
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAF-GP--ELIEHFEKSQGKTYVTDIEGD 59
Query: 172 V--VEPILLE---VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 226
+ + + V + H A V N + + NV GT +L + + L+
Sbjct: 60 IKDLSFLFRACQGVSVVIHTAAIVD-VFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLV 118
Query: 227 -TSTSEV-----YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD-----YHRG 275
TS+ EV G P+ + +T + + + Y K AE + ++ +G
Sbjct: 119 YTSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPP----YASSKLLAENIVLNANGAPLKQG 174
Query: 276 LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALR 310
+ R YG + ++ L
Sbjct: 175 GYLVTCALRPMYIYG-----EGSHFLTEIFDFLLT 204
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRG----------DSVIVVDNYFTGKKDNLIHHFGNPRFEL 167
+LVTG +GFV SH+V++L++RG V V+ D +L
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVN--HLLDLDAKPGRLELAVADL 58
Query: 168 IRHDVVEPILLEVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVGA--RF 224
+ ++ ++H+ A+PV + +P + IK + GTLN L A + RF
Sbjct: 59 TDEQSFDEVIKGCAGVFHV---ATPVSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVKRF 115
Query: 225 LLTST 229
+LTS+
Sbjct: 116 VLTSS 120
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 120 VTGGAGFVGSHLVDRLMDRGDSV-IVVDNYFTGKKDNLIH----HFGNPRFELIRHDVVE 174
VTG +GF+GS LV RL+ RG +V V + G + + H R +L + D+++
Sbjct: 3 VTGASGFIGSWLVKRLLQRGYTVRATVRD--PGDEKKVAHLLELEGAKERLKLFKADLLD 60
Query: 175 PILLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 227
+ D ++H+A P + + I+ V GTLN+L + + R + T
Sbjct: 61 YGSFDAAIDGCDGVFHVASPVDF-DSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVVFT 119
Query: 228 -STSEVYGDPLQHPQA---ETYWGNVN 250
S + V +P + E+ W +++
Sbjct: 120 SSVAAVVWNPNRGEGKVVDESCWSDLD 146
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 61/258 (23%), Positives = 100/258 (38%), Gaps = 48/258 (18%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
++IL+TG GF+G +L+ RL ++ D I + + EL +
Sbjct: 1 MKILITGAKGFIGKNLIARLKEQKDDDIF------------FYDRESDESEL------DD 42
Query: 176 ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR--FLLTSTSEVY 233
L D I+HLA P + NV T +L R G + LL+S+ +
Sbjct: 43 FLQGADFIFHLAGVNRPKD----EAEFESGNVGLTERLLDALTRNGKKPPILLSSSIQAA 98
Query: 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRM 293
D NP Y + K AE L +Y R G I R+ N +G
Sbjct: 99 LD--------------NP------YGKSKLAAEELLQEYARETGAPVYIYRLPNVFGKWC 138
Query: 294 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGN- 352
+ V+ F R P+ + + ++ D+V+ LI+L+EG
Sbjct: 139 RPNYNSAVATFCYNIARDLPIQINDPA-AELTLVYIDDVVDELIQLLEGAPTYSGGFDQV 197
Query: 353 -PG-EFTMLELAEVVQEI 368
P + T+ E+AE++ +
Sbjct: 198 LPVYKVTVGEIAELLYKF 215
|
This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 41/128 (32%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 117 RILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE 174
RIL+TGG G +GS L L R D+VI D K + G DV++
Sbjct: 1 RILITGGLGQIGSELAKLLRKRYGKDNVIASD---IRKPPAHVVLSG----PFEYLDVLD 53
Query: 175 PILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 227
LE + I HLA S V K NP N+ G N+L LA+ R +
Sbjct: 54 FKSLEEIVVNHKITWIIHLAALLSAVGEK-NPPLAWDVNMNGLHNVLELAREHNLRIFVP 112
Query: 228 STSEVYGD 235
ST +G
Sbjct: 113 STIGAFGP 120
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 5e-08
Identities = 46/207 (22%), Positives = 72/207 (34%), Gaps = 59/207 (28%)
Query: 120 VTGGAGFVGSHLVDRLMDRGDSVIVV----------------DNYFTGKKDNLIHHFGNP 163
+TG GF+G L+++L+ V + + +
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKAL--E 58
Query: 164 RFELIRHDVVEP-----------ILLEVDQIYHLACPASPVHYKFN-PVKTIK-TNVVGT 210
R + D+ EP + EVD I H A A+ F P ++ TNV+GT
Sbjct: 59 RIIPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNA--AT---VNFVEPYSDLRATNVLGT 113
Query: 211 LNMLGLAKRVG-ARFLLTSTSEVYGDPLQHPQAETY------------WGNVNPIGVRSC 257
+L LAK++ F ST+ V G+ + + Y N
Sbjct: 114 REVLRLAKQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNG-------- 165
Query: 258 YDEGKRTAETLTMDYHRGLGIEARIAR 284
Y + K AE L + GL + I R
Sbjct: 166 YTQSKWLAEQLVREAAGGLPV--VIYR 190
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 78/332 (23%), Positives = 118/332 (35%), Gaps = 59/332 (17%)
Query: 118 ILVTGGAGFVGSHLVDRL--MDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
ILVTG AG +G L RL R V +D ++ P+ E +R D+ +P
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGLDR----RRPPGSP----PKVEYVRLDIRDP 52
Query: 176 ------ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 228
E D + HLA P + + + NV GT N+L G R ++TS
Sbjct: 53 AAADVFREREADAVVHLAFILDPPR---DGAERHRINVDGTQNVLDACAAAGVPRVVVTS 109
Query: 229 TSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNT 288
+ VYG +P T + Y K E L ++ R E + +
Sbjct: 110 SVAVYGAHPDNPAPLTEDAPLRGSP-EFAYSRDKAEVEQLLAEFRR-RHPELNVTVL--- 164
Query: 289 YGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS-FQFV--SDLVEGLIRLMEGDHV 345
R G N L L V G FQF+ D+ L+ +
Sbjct: 165 ---RPATILGPGTRNTTRDFLSPRRLPVPGG---FDPPFQFLHEDDVARALVLAVRAGAT 218
Query: 346 GPFNLGNPGEFTMLELAEVVQEIIDRNARI-----------EFRPNTEDDPH-----KRK 389
G FN+ G + L+ V+ + R + P +
Sbjct: 219 GIFNVAGDGP---VPLSLVLALLGRRPVPLPSPLPAALAAARRLGLRPLPPEQLDFLQYP 275
Query: 390 P--DITKAKQLLGWEPRVTLRKGLPLMVADFR 419
P D T+A+ LGW+P+ T + ++ DFR
Sbjct: 276 PVMDTTRARVELGWQPKHTSAE----VLRDFR 303
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 81/354 (22%), Positives = 131/354 (37%), Gaps = 85/354 (24%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV---- 172
LV GG+GF+G HLV++L+ RG+ + V + + + + R + D+
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELD---PSSSGRVQFHTGDLTDPQ 57
Query: 173 -VEPILLE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTS 228
+E E + ++H ASP H N K NV GT N++ ++ G + + TS
Sbjct: 58 DLEKAFNEKGPNVVFHT---ASPDH-GSNDDLYYKVNVQGTRNVIEACRKCGVKKLVYTS 113
Query: 229 TSEVY--GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTM---DYHRGLGIEA-RI 282
++ V G + E+ P + Y+E K AE L + D GL A R
Sbjct: 114 SASVVFNGQDI-INGDESL---PYPDKHQDAYNETKALAEKLVLKANDPESGLLTCALRP 169
Query: 283 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG------- 335
A IF GP D ++V + A + GDG F +V ++
Sbjct: 170 AGIF---GPG----DRQLVPGLLKAAKNGKTKFQIGDGNNLFDFTYVENVAHAHILAADA 222
Query: 336 LIRLMEGDHVG------------PF---------NLGNPGEFTML----------ELAEV 364
L+ + V F LG ++ L E
Sbjct: 223 LLSSSHAETVAGEAFFITNDEPIYFWDFARAIWEGLGYERPPSIKLPRPVALYLASLLEW 282
Query: 365 VQEIIDRNARIEFRPNTEDDPHK-------RKPDITKAKQLLGWEPRVTLRKGL 411
+++ P + R +I KAK+ LG+ P VTL +G+
Sbjct: 283 TCKVL--------GKEPTFTPFRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGI 328
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 5e-07
Identities = 64/262 (24%), Positives = 113/262 (43%), Gaps = 30/262 (11%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE--P 175
+L+TGG G G+ ++ R +D I + + K+D++ + N + + DV +
Sbjct: 7 LLITGGTGSFGNAVLRRFLDTDIKEIRIFSRDEKKQDDMRKKYNNSKLKFYIGDVRDYRS 66
Query: 176 ILLE---VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML--GLAKRVGARFLLTSTS 230
IL VD IYH A +F+P++ +KTNV+GT N+L +A V L++
Sbjct: 67 ILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVKRVVCLSTDK 126
Query: 231 EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
VY +N +G+ E A++ +D + + R YG
Sbjct: 127 AVY--------------PINAMGISKAMMEKVMVAKSRNVDSSKTVICGTR-------YG 165
Query: 291 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNL 350
M G V+ FV +PLT+ D TR + D V+ ++ E + G +
Sbjct: 166 NVMA-SRGSVIPLFVDLIKAGKPLTI-TDPNMTRFMMTLEDAVDLVLYAFEHGNNGDIFV 223
Query: 351 GNPGEFTMLELAEVVQEIIDRN 372
T+ LA ++E+++ +
Sbjct: 224 QKAPAATIETLAIALKELLNAH 245
|
The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337 |
| >gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR) | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 38/185 (20%), Positives = 60/185 (32%), Gaps = 53/185 (28%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
+LVTGG+G +G + L RG V+VV ++D ++H+ + I
Sbjct: 1 VLVTGGSGGIGGAIARWLASRGSPKVLVVS-----RRDVVVHNAAILDDGRL-------I 48
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK-----RVGARFLLTSTSE 231
L + + I+ NVVGT +L A+ + RF+L S+
Sbjct: 49 DLTGSR----------------IERAIRANVVGTRRLLEAARELMKAKRLGRFILISSVA 92
Query: 232 VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR---GLGIEARIARIFNT 288
G Y K + L + G G+ A
Sbjct: 93 GLFG---------APGLGG-------YAASKAALDGLAQQWASEGWGNGLPATAVACGTW 136
Query: 289 YGPRM 293
G M
Sbjct: 137 AGSGM 141
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFE----LIRHDVV 173
IL+ G GF+G L L+++G V ++ L P L D +
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVR----NTKRLSKEDQEPVAVVEGDLRDLDSL 56
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 232
+ VD + HL A + + +V GT N+L AK G F+ S+
Sbjct: 57 SDAVQGVDVVIHL---AGAPRDTRDF---CEVDVEGTRNVLEAAKEAGVKHFIFISSLGA 110
Query: 233 YGDP 236
YGD
Sbjct: 111 YGDL 114
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 7e-06
Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 27/138 (19%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF------TGKKDNLIHHFGNPRFELIRH 170
R VTGG GF+G LV RL+DR V + + + L ++G R +
Sbjct: 2 RYFVTGGTGFIGRRLVSRLLDRRREATV---HVLVRRQSLSRLEALAAYWGADRVVPLVG 58
Query: 171 DVVEPIL----------LEVDQIYHLACPASPVHYKFNP--VKTIKTNVVGTLNMLGLAK 218
D+ EP L ++D + HLA Y NV GT N++ LA+
Sbjct: 59 DLTEPGLGLSEADIAELGDIDHVVHLAAI-----YDLTADEEAQRAANVDGTRNVVELAE 113
Query: 219 RVGAR-FLLTSTSEVYGD 235
R+ A F S+ V GD
Sbjct: 114 RLQAATFHHVSSIAVAGD 131
|
Length = 657 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 9e-06
Identities = 38/204 (18%), Positives = 64/204 (31%), Gaps = 39/204 (19%)
Query: 117 RILVTGGAGFVGSHLVDRLMDR------------------------GDSVIVVDNYFTGK 152
+L+TG GF+G++L+ L+DR D D +
Sbjct: 2 NVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADR 61
Query: 153 KDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLN 212
+ + P L E + VD I H A+ V++ F + NV+GT
Sbjct: 62 VEVVAGDLAEPDLGLSERTWQE-LAENVDLIIH---NAALVNHVFPYSELRGANVLGTAE 117
Query: 213 MLGLAKRVGARFL-LTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD 271
+L LA + L S+ V + + + L
Sbjct: 118 VLRLAATGKPKPLHYVSSISVGETEYYSNFTVDF----------DEISPTRNVGQGLAGG 167
Query: 272 YHRGLGIEARIARIFNTYGPRMCI 295
Y R + ++ R G + I
Sbjct: 168 YGRSKWVAEKLVREAGDRGLPVTI 191
|
Length = 382 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 19/123 (15%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
+++LVTG GFVGS +V L+++G+ V V+ T + NL E++ D+ +P
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRP-TSDRRNL----EGLDVEIVEGDLRDP 55
Query: 176 ILLE-----VDQIYHLACPASPVHYKF---NPVKTIKTNVVGTLNMLGLAKRVGA-RFLL 226
L ++H+A Y+ +P + NV GT N+L A G R +
Sbjct: 56 ASLRKAVAGCRALFHVA-----ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVY 110
Query: 227 TST 229
TS+
Sbjct: 111 TSS 113
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 56/279 (20%), Positives = 86/279 (30%), Gaps = 54/279 (19%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV----- 172
IL+TGG GF+G L RL RG V + L
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTI-----------LTRSPPPGANTKWEGYKPWAGE 49
Query: 173 VEPILLEVDQIYHLACPASPVHYKFNPV--KTIKTNVVGTLNMLGLA----KRVGARFLL 226
L D + +LA ++ + I+ + + T +L A ++ F+
Sbjct: 50 DADSLEGADAVINLA-GEPIADKRWTEERKQEIRDSRIDTTRLLVEAIAAAEQKPKVFIS 108
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYD-EGKRTAETLTMDYHRGLGIEARIARI 285
S YG E + C D E A+
Sbjct: 109 ASAVGYYGPSEDREYTEEDSPAGDDFLAELCRDWE--------------------EAAQA 148
Query: 286 FNTYGPRMCI-DDGRVVSNFVAQALRK-EPLTVY------GDGKQTRSFQFVSDLVEGLI 337
G R+ + G V+ AL K G G+Q S+ + DLV+ ++
Sbjct: 149 AEDLGTRVVLLRTGIVLGP-KGGALAKMLLPFRLGLGGPLGSGRQWFSWIHIEDLVQLIL 207
Query: 338 RLMEGDHV-GPFNLGNPGEFTMLELAEVVQEIIDRNARI 375
+E V GP N P E A+ + + R A
Sbjct: 208 FALENASVSGPVNATAPEPVRNKEFAKALARALHRPAFF 246
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVV 145
+ILVTG GFVG +V L+ RG V
Sbjct: 2 KILVTGATGFVGGAVVRELLARGHEVRAA 30
|
Length = 275 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 39/153 (25%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSV--IVV----DNYFTGKKD--NLIHHFGNPRFEL- 167
+L+TG GF+G L+++L+ + I + + + ++ L+ R
Sbjct: 2 SVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRNL 61
Query: 168 ----------IRHDVVEP-----------ILLEVDQIYHLACPASPVHYKFNP--VKTIK 204
I D+ EP ++ EV+ I H A A+ F+ + +
Sbjct: 62 NPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCA--AT---VTFDERLDEALS 116
Query: 205 TNVVGTLNMLGLAKRV--GARFLLTSTSEVYGD 235
NV+GTL +L LAKR F+ ST+ V GD
Sbjct: 117 INVLGTLRLLELAKRCKKLKAFVHVSTAYVNGD 149
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKK 153
I+VTGGAGF+GS++V L D+G ++VVDN G K
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK 38
|
Length = 308 |
| >gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 120 VTGGAGFVGSHLVDRLMDRGDSV--IVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVE-- 174
VTG +G++ S LV L+ RG +V V D K ++L+ G R L + +++E
Sbjct: 9 VTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEG 68
Query: 175 ---PILLEVDQIYHLACPASPVHYKFNP-VKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228
++ + ++H A P H +P + I V GTLN+L +V + R ++TS
Sbjct: 69 SFDSVVDGCEGVFHTASPF--YHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTS 126
Query: 229 T 229
+
Sbjct: 127 S 127
|
Length = 322 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 25/142 (17%)
Query: 101 VNAGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSV--IVVDNYFTGKKDNLIH 158
+N GGK+ + VTG +G++ S +V L+ RG +V V D K ++L+
Sbjct: 1 MNGGGKL----------VCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLA 50
Query: 159 HFG-NPRFELIRHDVVEPILLE-----VDQIYHLACPASPVHYKFNPVKT--IKTNVVGT 210
G R +L + D++E E D ++H ASPV + +T I + GT
Sbjct: 51 LDGAKERLKLFKADLLEESSFEQAIEGCDAVFH---TASPVFFTVKDPQTELIDPALKGT 107
Query: 211 LNMLGLAKRVGA--RFLLTSTS 230
+N+L K + R +LTS++
Sbjct: 108 INVLNTCKETPSVKRVILTSST 129
|
Length = 322 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVV 145
+I++TGG GF+G L RL G V+V+
Sbjct: 1 KIVITGGTGFIGRALTRRLTAAGHEVVVL 29
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-- 175
+LVTG G+VG LV RL+ G V + L + R ++R D+ +P
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRA----LVRSPEKLADRPWSERVTVVRGDLEDPES 56
Query: 176 ---ILLEVDQIYHL 186
L +D Y+L
Sbjct: 57 LRAALEGIDTAYYL 70
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 41/129 (31%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 298 GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGE-- 355
G ++ F QA PLTVYG G QTR F + D V R +E + N PGE
Sbjct: 283 GTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTV----RCIE---IAIANPAKPGEFR 335
Query: 356 --------FTMLELAEVVQ---EIIDRNARIEFRPN--TEDDPHKRKPDITKAKQLLGWE 402
F++ ELA++V E + + + PN E + H TK LG E
Sbjct: 336 VFNQFTEQFSVNELAKLVTKAGEKLGLDVEVISVPNPRVEAEEHYYNAKHTKL-CELGLE 394
Query: 403 PRVTLRKGL 411
P L L
Sbjct: 395 P-HLLSDSL 402
|
Length = 442 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 29/177 (16%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVV------------DNYFTGKKDNLIHHF--GNP 163
+L+TG GF+G++L++ L+ R V+ + + + H
Sbjct: 2 VLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWHEDLARE 61
Query: 164 RFELIRHDVVEPIL-----------LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLN 212
R E++ D+ EP L VD I H + V++ + + NV+GT
Sbjct: 62 RIEVVAGDLSEPRLGLSDAEWERLAENVDTIVH---NGALVNWVYPYSELRGANVLGTRE 118
Query: 213 MLGLAKRVGAR-FLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268
+L LA A+ ST V E P G+ Y + K AE L
Sbjct: 119 VLRLAASGRAKPLHYVSTISVGAAIDLSTVTEDDATVTPPPGLAGGYAQSKWVAELL 175
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVV 145
++LV G G VG H+V L+DRG V +
Sbjct: 1 KVLVVGATGKVGRHVVRELLDRGYQVRAL 29
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGDSVI 143
+++ VTG GF+GS +V L+ G V+
Sbjct: 1 MKVFVTGATGFIGSAVVRELVAAGHEVV 28
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 447 | |||
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.98 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.98 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.97 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.97 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.97 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.97 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.95 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.95 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.95 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.95 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.95 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.94 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.94 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.93 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.92 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.92 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.9 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.9 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.9 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.88 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.88 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.87 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.86 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.85 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.84 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.84 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.84 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.83 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.83 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.83 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.83 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.83 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.83 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.83 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.82 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.82 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.82 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.81 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.81 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.81 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.81 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.81 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.8 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.8 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.8 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.79 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.79 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.79 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.79 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.79 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.78 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.78 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.78 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.78 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.78 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.77 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.77 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.77 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.77 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.76 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.76 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.76 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.76 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.75 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.75 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.75 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.75 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.75 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.75 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.75 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.75 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.75 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.74 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.74 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.74 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.74 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.74 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.74 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.73 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.73 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.73 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.73 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.72 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.72 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.72 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.72 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.72 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.72 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.72 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.72 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.72 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.72 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.72 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.72 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.72 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.72 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.71 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.71 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.71 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.7 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.7 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.7 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.7 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.69 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.69 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.69 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.69 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.69 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.68 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.68 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.68 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.68 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.68 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.68 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.68 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.67 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.67 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.67 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.67 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.66 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.66 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.66 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.66 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.65 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.65 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.65 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.65 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.64 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.64 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.61 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.61 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.6 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.59 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.58 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.58 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.58 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.57 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.55 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.55 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.54 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.53 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.52 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.52 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.5 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.5 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.49 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.48 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.45 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.45 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.43 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.4 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.39 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.39 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.38 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.38 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.37 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.36 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.34 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.31 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.25 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.21 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.11 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.08 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.06 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.83 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.79 | |
| PLN00106 | 323 | malate dehydrogenase | 98.73 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.57 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.54 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.52 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.45 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.43 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.41 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.33 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.18 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.12 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.04 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.04 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.97 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.85 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.79 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 97.65 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.65 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.62 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.61 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.61 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.61 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.61 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.58 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.55 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.55 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.54 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.53 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.48 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.47 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.43 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.41 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.35 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.34 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.3 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.27 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.2 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.16 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.12 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.11 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.01 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.0 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.99 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.95 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.94 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.87 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.87 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.85 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.85 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.82 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 96.8 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.79 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.79 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.78 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.74 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.74 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.73 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.72 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.72 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.68 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.68 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.64 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.63 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.6 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.58 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.58 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.58 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.56 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.52 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.51 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.51 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.51 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.5 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.47 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.47 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 96.44 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.41 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 96.39 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 96.33 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.31 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.3 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.24 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.2 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.2 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.19 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.17 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.13 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.12 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.1 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.08 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.04 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.02 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.02 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.01 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.99 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.98 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.98 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.97 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.96 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.91 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 95.89 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 95.88 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 95.88 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.81 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.75 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.67 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.65 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 95.64 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 95.63 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 95.61 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.59 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 95.56 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.55 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.53 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 95.53 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.51 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.41 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.38 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.36 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.36 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.33 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.32 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 95.31 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.29 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 95.26 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.22 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.17 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.17 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 95.12 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 95.08 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.0 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 94.98 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 94.94 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 94.93 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 94.83 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 94.79 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.74 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.71 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.68 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.61 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 94.59 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.55 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 94.55 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 94.53 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 94.5 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 94.43 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.43 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 94.42 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 94.4 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.39 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 94.25 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 94.15 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 94.14 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 94.09 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 94.08 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.06 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.0 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 93.99 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.97 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 93.94 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 93.94 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.91 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 93.91 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 93.9 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 93.89 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 93.87 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 93.86 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.86 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 93.86 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.86 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 93.85 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 93.81 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 93.8 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 93.79 | |
| PF08732 | 410 | HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti | 93.77 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 93.74 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 93.69 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 93.65 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 93.65 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 93.58 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 93.57 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.56 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 93.47 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 93.42 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 93.31 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 93.29 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.26 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.26 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.23 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.16 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 93.15 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 93.12 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.1 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 93.03 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 93.02 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 93.0 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 92.99 | |
| PLN02928 | 347 | oxidoreductase family protein | 92.93 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 92.92 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 92.91 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.89 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 92.83 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 92.82 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.8 |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=525.88 Aligned_cols=429 Identities=74% Similarity=1.186 Sum_probs=352.7
Q ss_pred CccccccccCCCccccccccCCCCCCCCCCCCCCCchHHHHHhhhhHHHHHHHHHHHHhHhhcccccccCCCCCCCCCC-
Q 013226 2 GSHELIHRSQTSQTQDQIIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAISSLIFSKLPVRQHQIANPAPLTT- 80 (447)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (447)
|+|||+||+++ ..+..++.|+|||+|||.|++||++|||+|||++|+|+|+++++++|++.+.+....+......+
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (442)
T PLN02206 1 MASELINRRHE---ETQPTADAYYPKPIKPWFVVTRPIRYMLREQRLVFVLVGIAIATLVFTIFPSSSQPSPYSVDPLSG 77 (442)
T ss_pred CCccccccCCC---CCCCCCCCCCCCCCCCcccCccHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcCCCCccccccccc
Confidence 78999999984 22345789999999999999999999999999999999999999999988776432221000100
Q ss_pred ----ccccc-ccchhhhHHHh--hhhhhccCCCCCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc
Q 013226 81 ----SETTH-LSRRRVLYEAA--EVQHVNAGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK 153 (447)
Q Consensus 81 ----~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~ 153 (447)
+.... ...+....... .......++++|.+...++|+||||||+||||++|+++|+++|++|++++|....+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~ 157 (442)
T PLN02206 78 YGIRPDESYVPAIQAQRKPSLEYLNRIGNSGGKIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRK 157 (442)
T ss_pred ccccccccccccccceecccccccccccccCCcCccccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccch
Confidence 00000 01110000000 011124578899999999999999999999999999999999999999988644433
Q ss_pred cccccccCCCceEEEecccccccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 154 DNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 154 ~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
+.........+++++.+|+.++.+.++|+|||+|+...+..+..++.+.+++|+.|+.+|+++|++.+++||++||..+|
T Consensus 158 ~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VY 237 (442)
T PLN02206 158 ENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 237 (442)
T ss_pred hhhhhhccCCceEEEECCccChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHh
Confidence 33333334457899999999999889999999999766555556788899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCC
Q 013226 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP 313 (447)
Q Consensus 234 g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~ 313 (447)
|.....+..|+.|...+|..+.+.|+.+|.++|.++..+.+..+++++++||+++|||+++...+.++..++..++.+++
T Consensus 238 g~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~ 317 (442)
T PLN02206 238 GDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP 317 (442)
T ss_pred CCCCCCCCCccccccCCCCCccchHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCC
Confidence 98777788898876666777778999999999999999988889999999999999998765556778889999999999
Q ss_pred eEEecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChH
Q 013226 314 LTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDIT 393 (447)
Q Consensus 314 ~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~ 393 (447)
+.+++++++.++|+||+|+|++++.+++++..|.||+++++.+|+.|+++.+.+.++.+..+.+.+....+.....+|++
T Consensus 318 i~i~g~G~~~rdfi~V~Dva~ai~~a~e~~~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~s 397 (442)
T PLN02206 318 LTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDIT 397 (442)
T ss_pred cEEeCCCCEEEeEEeHHHHHHHHHHHHhcCCCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCCCCCccccccCHH
Confidence 99999999999999999999999999988777899999999999999999999999988778777766566677789999
Q ss_pred HHHHHcCCCccCCHHHHHHHHHHHHHHHhcCCcccCCCCC
Q 013226 394 KAKQLLGWEPRVTLRKGLPLMVADFRHRIFGDQKEAGGGG 433 (447)
Q Consensus 394 k~~~~lG~~p~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
|++++|||+|+++++|+|+++++||+..+..+.++...+.
T Consensus 398 Ka~~~LGw~P~~~l~egl~~~~~~~~~~~~~~~~~~~~~~ 437 (442)
T PLN02206 398 KAKELLGWEPKVSLRQGLPLMVKDFRQRVFGDQKEGSSTT 437 (442)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHhhhcccccccccc
Confidence 9999999999999999999999999999887766655543
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=511.30 Aligned_cols=424 Identities=67% Similarity=1.116 Sum_probs=345.1
Q ss_pred ccccccCC---Cc-cccc-cccCCCCCCCCCCCCCCCchHHHHHhhhhHHHHHHHHHHHHhHhhcccccccCCCCCCCCC
Q 013226 5 ELIHRSQT---SQ-TQDQ-IIGLDSSPRPSKSVKSFRNPVQYVLRSQRLIFLFIGIAISSLIFSKLPVRQHQIANPAPLT 79 (447)
Q Consensus 5 ~~~~~~~~---~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (447)
||+||+++ +. ..++ +.++.|+|||.++++|++||++|||+|||++|+|+|+++++++|++.|.+....|..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T PLN02166 2 KQLHKQMSVNHRRDEEIPTSQSSPYSPKTLKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQPSLSRLGPAESTSL 81 (436)
T ss_pred cchhhcCCccccCCCCCCccccCCCCCCCCCCCccccchHHHHHHhhhHHHHHHHHHHHHHHHhhCCccccCCccccccc
Confidence 56777663 11 1223 3478999996555599999999999999999999999999999998887765444221111
Q ss_pred Ccccc--cccchh-hhHHHhhhhhhccCCCCCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccc
Q 013226 80 TSETT--HLSRRR-VLYEAAEVQHVNAGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL 156 (447)
Q Consensus 80 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~ 156 (447)
..... +..... .............++++|.+...+.|+|+||||+||||++|+++|+++|++|++++|......+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~ 161 (436)
T PLN02166 82 ITRSVSIAVTDSPPSSSTFNSSGGGGRTGRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENL 161 (436)
T ss_pred cccccccccccCccchhhccccccccccCCCCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHh
Confidence 00000 000000 000011122335678999999999999999999999999999999999999999998644333333
Q ss_pred ccccCCCceEEEecccccccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCC
Q 013226 157 IHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236 (447)
Q Consensus 157 ~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~ 236 (447)
.......+++++..|+.+..+.++|+|||+|+...+..+..++.+.+++|+.|+.+|+++|++.+++||++||.+|||..
T Consensus 162 ~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~~ 241 (436)
T PLN02166 162 VHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDP 241 (436)
T ss_pred hhhccCCceEEEECccccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCCC
Confidence 22223457889999999998889999999999766555556788899999999999999999998899999999999987
Q ss_pred CCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEE
Q 013226 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTV 316 (447)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (447)
...+++|+.|....|..+.+.|+.+|..+|.+++.+.+..+++++++||+++|||++....+.++..++..++.++++.+
T Consensus 242 ~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v 321 (436)
T PLN02166 242 LEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTV 321 (436)
T ss_pred CCCCCCccccccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEE
Confidence 77788898776666777788999999999999999988889999999999999998765456788899999999999999
Q ss_pred ecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHH
Q 013226 317 YGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAK 396 (447)
Q Consensus 317 ~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 396 (447)
++++++.++|+||+|++++++.++++...|+||+++++.+|+.|+++.|.+.+|.+..+.+.+....+.....+|++|++
T Consensus 322 ~g~g~~~rdfi~V~Dva~ai~~~~~~~~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~ 401 (436)
T PLN02166 322 YGDGKQTRSFQYVSDLVDGLVALMEGEHVGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTADDPHKRKPDISKAK 401 (436)
T ss_pred eCCCCeEEeeEEHHHHHHHHHHHHhcCCCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHH
Confidence 99999999999999999999999987777899999999999999999999999988878777766666677789999999
Q ss_pred HHcCCCccCCHHHHHHHHHHHHHHHhcCCccc
Q 013226 397 QLLGWEPRVTLRKGLPLMVADFRHRIFGDQKE 428 (447)
Q Consensus 397 ~~lG~~p~~s~~e~l~~~~~~~~~~~~~~~~~ 428 (447)
++|||+|+++++++|+++++||+.++..+++.
T Consensus 402 ~~LGw~P~~sl~egl~~~i~~~~~~~~~~~~~ 433 (436)
T PLN02166 402 ELLNWEPKISLREGLPLMVSDFRNRILNEDEG 433 (436)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999999999998877543
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-56 Score=401.43 Aligned_cols=317 Identities=76% Similarity=1.225 Sum_probs=306.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASP 192 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~ 192 (447)
..+++|+||||.||||+|||+.|..+|++|+++|.....++.++.+....+.++++..|+..+.+.++|.|||+|++.++
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD~IyhLAapasp 104 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEPLLKEVDQIYHLAAPASP 104 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCcceeEEEeechhHHHHHhhhhhhhccCCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDY 272 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~ 272 (447)
..+..++...+..|+.|+.+++..|++.++||++.||+.|||++..+|..|++|.+..|..+.++|...|..+|+++.+|
T Consensus 105 ~~y~~npvktIktN~igtln~lglakrv~aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegKr~aE~L~~~y 184 (350)
T KOG1429|consen 105 PHYKYNPVKTIKTNVIGTLNMLGLAKRVGARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKRVAETLCYAY 184 (350)
T ss_pred cccccCccceeeecchhhHHHHHHHHHhCceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEecC
Q 013226 273 HRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGN 352 (447)
Q Consensus 273 ~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~~ 352 (447)
.++.|+.+.|.|+.++|||++++++++++..|+.+.++++++.+||+|.++++|+||+|++++++++++++..+.+||++
T Consensus 185 ~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s~~~~pvNiGn 264 (350)
T KOG1429|consen 185 HKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMESDYRGPVNIGN 264 (350)
T ss_pred hcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcCCCcCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHhcCCcccC
Q 013226 353 PGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFGDQKEA 429 (447)
Q Consensus 353 ~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~~~~~~~~ 429 (447)
|+.+|+.|+++++.+..+....+.+.+...+++..+..|++++++.|||+|+.+++|+|..++.|++.++..+.+..
T Consensus 265 p~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~LgW~Pkv~L~egL~~t~~~fr~~i~~~~~~g 341 (350)
T KOG1429|consen 265 PGEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQLGWEPKVSLREGLPLTVTYFRERIAREKKKG 341 (350)
T ss_pred ccceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHHhCCCCCCcHHHhhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999988889999999999999999999999999999999999999999999999998765443
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=346.55 Aligned_cols=300 Identities=31% Similarity=0.510 Sum_probs=268.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCC-CCccccccccCCCceEEEecccccccc-----c--CCCEEEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFT-GKKDNLIHHFGNPRFELIRHDVVEPIL-----L--EVDQIYH 185 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~D~~~~~~-----~--~~d~Vih 185 (447)
|++|||||+||||+..+++++++.. +|+++|.-.- ...+.+......+++.++++|+.+..+ . .+|+|+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 5799999999999999999999865 5777776422 234555555566799999999998753 2 4899999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCC--CCCCCcCCCCCCCCCCChHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQH--PQAETYWGNVNPIGVRSCYDEG 261 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~--~~~e~~~~~~~~~~~~~~Y~~s 261 (447)
+|+-+.....-..|..++++|+.||.+|++++++... ||+++||..|||.-... .++|+ +|..|.++|++|
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~-----tp~~PsSPYSAS 155 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTET-----TPYNPSSPYSAS 155 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccC-----CCCCCCCCcchh
Confidence 9998877666678999999999999999999999874 99999999999976553 67888 899999999999
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 262 KRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 262 K~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
|+.+..++++|.+.+|++++|.||+|-|||.+ .+..+++.++.+++.|++++++|+|.+.++|+||+|-|+|+-.+++
T Consensus 156 KAasD~lVray~~TYglp~~ItrcSNNYGPyq--fpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 156 KAASDLLVRAYVRTYGLPATITRCSNNYGPYQ--FPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhhHHHHHHHHHHHcCCceEEecCCCCcCCCc--CchhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHh
Confidence 99999999999999999999999999999998 6788999999999999999999999999999999999999999999
Q ss_pred CCCCC-cEEecCCCccCHHHHHHHHHHHhCCCCc-----EEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHH
Q 013226 342 GDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNAR-----IEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415 (447)
Q Consensus 342 ~~~~g-~~~i~~~~~~s~~el~~~i~~~~g~~~~-----~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~ 415 (447)
+...| +|||+++...+-.|+++.|.+.+|...+ +.++....+-.....+|.+|++++|||+|+++|++||++++
T Consensus 234 kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe~GlrkTv 313 (340)
T COG1088 234 KGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQETFETGLRKTV 313 (340)
T ss_pred cCcCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCCcCCCHHHHHHHHH
Confidence 88776 9999999999999999999999998877 78888777888888999999999999999999999999999
Q ss_pred HHHHHHh
Q 013226 416 ADFRHRI 422 (447)
Q Consensus 416 ~~~~~~~ 422 (447)
+||..+.
T Consensus 314 ~WY~~N~ 320 (340)
T COG1088 314 DWYLDNE 320 (340)
T ss_pred HHHHhch
Confidence 9998754
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=337.43 Aligned_cols=296 Identities=31% Similarity=0.511 Sum_probs=260.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc-------cCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL-------LEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------~~~d~Vih~Ag 188 (447)
|+||||||+||||+|.+.+|++.|++|+++|+......+.+... .+.++.+|+.|..+ .++|.|||+||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~----~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa 76 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL----QFKFYEGDLLDRALLTAVFEENKIDAVVHFAA 76 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc----cCceEEeccccHHHHHHHHHhcCCCEEEECcc
Confidence 57999999999999999999999999999998766665554322 26899999988754 35999999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAET 267 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~ 267 (447)
.....+.-.+|.+.++.|+.||.+|+++|+++|+ +|||-||++|||.+...|+.|+ .|..|.++||+||++.|+
T Consensus 77 ~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~-----~~~~p~NPYG~sKlm~E~ 151 (329)
T COG1087 77 SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISET-----SPLAPINPYGRSKLMSEE 151 (329)
T ss_pred ccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCC-----CCCCCCCcchhHHHHHHH
Confidence 8888888888999999999999999999999999 9999999999999999999999 788888999999999999
Q ss_pred HHHHHHhhhCCcEEEEeeccccCCCCc-------cCCCchHHHHHHHHHhCCC-eEEecC------CCeeEccccHHHHH
Q 013226 268 LTMDYHRGLGIEARIARIFNTYGPRMC-------IDDGRVVSNFVAQALRKEP-LTVYGD------GKQTRSFQFVSDLV 333 (447)
Q Consensus 268 ~~~~~~~~~~i~~~ivRp~~i~Gp~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~i~v~D~a 333 (447)
+++++++.++++++++|-+|+.|.... .....+++..+.-++...+ +.++|+ |..++|||||.|+|
T Consensus 152 iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA 231 (329)
T COG1087 152 ILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLA 231 (329)
T ss_pred HHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHHH
Confidence 999999999999999999999986533 1124566777666665544 777764 56789999999999
Q ss_pred HHHHHHHcC---C-CCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccC-CHH
Q 013226 334 EGLIRLMEG---D-HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRV-TLR 408 (447)
Q Consensus 334 ~ai~~~l~~---~-~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-s~~ 408 (447)
++++.+++. . ...+||+++|..+|+.|+++.++++.|.+.+.+..|...+++...+.|.+|++++|||+|++ +++
T Consensus 232 ~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~RR~GDpa~l~Ad~~kA~~~Lgw~p~~~~L~ 311 (329)
T COG1087 232 DAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPAILVADSSKARQILGWQPTYDDLE 311 (329)
T ss_pred HHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCCCCCCCceeEeCHHHHHHHhCCCcccCCHH
Confidence 999998863 2 22499999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHH
Q 013226 409 KGLPLMVADFRH 420 (447)
Q Consensus 409 e~l~~~~~~~~~ 420 (447)
+.++..++|..+
T Consensus 312 ~ii~~aw~W~~~ 323 (329)
T COG1087 312 DIIKDAWDWHQQ 323 (329)
T ss_pred HHHHHHHHHhhh
Confidence 999999999885
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=359.38 Aligned_cols=306 Identities=26% Similarity=0.367 Sum_probs=248.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc------cCCCceEEEeccccccc-----ccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH------FGNPRFELIRHDVVEPI-----LLE 179 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~------~~~~~v~~~~~D~~~~~-----~~~ 179 (447)
..+++|+|+||||+||||++|+++|+++|++|++++|............ ....++.++.+|+.+.. +.+
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 4567799999999999999999999999999999998643322111110 01135788999998753 567
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChH
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCY 258 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y 258 (447)
+|+|||+|+.........++.+.+++|+.||.+|+++|++.++ +|||+||.++||.....+..|+ .+..|.+.|
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y 165 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEE-----RIGRPLSPY 165 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCC-----CCCCCCChh
Confidence 9999999997654444456778899999999999999999998 9999999999997666666666 345566889
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC--CCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHH
Q 013226 259 DEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai 336 (447)
+.+|..+|.+++.+.+.++++++++||+++|||++... ...++..++..++.++++.+++++.+.++|+|++|+|+++
T Consensus 166 ~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~ 245 (348)
T PRK15181 166 AVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQAN 245 (348)
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHH
Confidence 99999999999999888899999999999999986533 2357888888889999999999999999999999999999
Q ss_pred HHHHcCC----CCCcEEecCCCccCHHHHHHHHHHHhCCCC------cEEecCCCCCCCCcccCChHHHHHHcCCCccCC
Q 013226 337 IRLMEGD----HVGPFNLGNPGEFTMLELAEVVQEIIDRNA------RIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVT 406 (447)
Q Consensus 337 ~~~l~~~----~~g~~~i~~~~~~s~~el~~~i~~~~g~~~------~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s 406 (447)
+.++..+ ..++||+++++.+|++|+++.+.+.++... .+...+....+.....+|++|++++|||+|+++
T Consensus 246 ~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~P~~s 325 (348)
T PRK15181 246 LLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTFLSYEPEFD 325 (348)
T ss_pred HHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHHHhCCCCCCC
Confidence 9877643 246999999999999999999999987321 122233333344456789999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013226 407 LRKGLPLMVADFRHR 421 (447)
Q Consensus 407 ~~e~l~~~~~~~~~~ 421 (447)
++|+|+++++|++.+
T Consensus 326 l~egl~~~~~w~~~~ 340 (348)
T PRK15181 326 IKEGLKQTLKWYIDK 340 (348)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999866
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=338.17 Aligned_cols=313 Identities=29% Similarity=0.424 Sum_probs=239.5
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccc---cCCCceEEEecccccc-----cccCCC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHH---FGNPRFELIRHDVVEP-----ILLEVD 181 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~D~~~~-----~~~~~d 181 (447)
.+.+.|+||||||+||||++|+++|+++ |++|++++|...... .+... ....+++++.+|+.+. .+.++|
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~-~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIK-HLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhh-hhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 3457789999999999999999999998 599999998643211 11110 0113688999999765 345799
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCC-----------CC
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGN-----------VN 250 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~-----------~~ 250 (447)
+|||+|+...+..+..++.+.+..|+.++.+++++|++.+.||||+||.++||......++|+.... ..
T Consensus 89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~ 168 (386)
T PLN02427 89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDES 168 (386)
T ss_pred EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCCCcCCCCCccccccccccccccccccc
Confidence 9999999765544445566777899999999999999887899999999999975433333321100 00
Q ss_pred C------CCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC---------CCchHHHHHHHHHhCCCeE
Q 013226 251 P------IGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID---------DGRVVSNFVAQALRKEPLT 315 (447)
Q Consensus 251 ~------~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~---------~~~~~~~~~~~~~~~~~~~ 315 (447)
+ ..+.+.|+.+|..+|.+++.+++..+++++++||+++|||++... ...++..++..++.++++.
T Consensus 169 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 248 (386)
T PLN02427 169 PCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLK 248 (386)
T ss_pred ccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCCCeE
Confidence 0 123467999999999999999888899999999999999985321 1245666777888888998
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCCC--C-CcEEecCC-CccCHHHHHHHHHHHhCCCCc-----E--EecCC----
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGDH--V-GPFNLGNP-GEFTMLELAEVVQEIIDRNAR-----I--EFRPN---- 380 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~~--~-g~~~i~~~-~~~s~~el~~~i~~~~g~~~~-----~--~~~~~---- 380 (447)
+++++++.++|+||+|+|++++.+++++. . ++||++++ +.+++.|+++.+.+.+|.... . ...+.
T Consensus 249 ~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 328 (386)
T PLN02427 249 LVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPTVDVSSKEFY 328 (386)
T ss_pred EECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccccccCccccc
Confidence 88888888999999999999999998753 3 48999987 599999999999999984211 1 01111
Q ss_pred --CCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHhcC
Q 013226 381 --TEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFG 424 (447)
Q Consensus 381 --~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~~~ 424 (447)
...+......|.+|++++|||+|+++++++|+++++|++.....
T Consensus 329 ~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~~ 374 (386)
T PLN02427 329 GEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYAE 374 (386)
T ss_pred CccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHHH
Confidence 11233455779999999999999999999999999999987764
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=331.69 Aligned_cols=300 Identities=26% Similarity=0.318 Sum_probs=237.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc-ccccccc------CCCceEEEeccccccc-----cc--CCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK-DNLIHHF------GNPRFELIRHDVVEPI-----LL--EVD 181 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~-~~~~~~~------~~~~v~~~~~D~~~~~-----~~--~~d 181 (447)
|+||||||+||||++|+++|+++|++|++++|...... +.+.... ...++.++.+|+++.. +. ++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999998653211 1111100 1235788999998763 23 479
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC----eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCCh
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSC 257 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~----r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~ 257 (447)
+|||+|+..........+...+++|+.|+.+++++|++.++ +|||+||.++||.....+++|+ .+..|.+.
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~ 155 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNET-----TPFYPRSP 155 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCC-----CCCCCCCh
Confidence 99999997654333345667888999999999999998773 7999999999997666677777 56677889
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC-CCchHHHHHHHHHhCCC-eEEecCCCeeEccccHHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID-DGRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~a 335 (447)
|+.||..+|.+++.+++++++++++.|+.++|||+.... ....+..++..+..+++ ...++++++.++|+||+|+|++
T Consensus 156 Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a 235 (343)
T TIGR01472 156 YAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEA 235 (343)
T ss_pred hHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHH
Confidence 999999999999999988899999999999999974321 12345556666666654 4456888899999999999999
Q ss_pred HHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcE-------------------Eec--CCCCCCCCcccCChHH
Q 013226 336 LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARI-------------------EFR--PNTEDDPHKRKPDITK 394 (447)
Q Consensus 336 i~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~-------------------~~~--~~~~~~~~~~~~d~~k 394 (447)
++.+++++..+.||+++++++|+.|+++.+.+.+|.+..+ ... +....+......|++|
T Consensus 236 ~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 315 (343)
T TIGR01472 236 MWLMLQQDKPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVDLLLGDATK 315 (343)
T ss_pred HHHHHhcCCCccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCCCccchhcCCHHH
Confidence 9999987766899999999999999999999999865321 111 1123344455679999
Q ss_pred HHHHcCCCccCCHHHHHHHHHHHHHH
Q 013226 395 AKQLLGWEPRVTLRKGLPLMVADFRH 420 (447)
Q Consensus 395 ~~~~lG~~p~~s~~e~l~~~~~~~~~ 420 (447)
++++|||+|+++++|+|++++++|+.
T Consensus 316 ~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 316 AKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999984
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=333.90 Aligned_cols=307 Identities=30% Similarity=0.461 Sum_probs=243.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag 188 (447)
++|+|+||||+||||+++++.|.++|++|++++|........ ......++.+|+.+. .+.++|+|||+|+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSE-----DMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccccc-----ccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 678999999999999999999999999999999853221111 011246677888754 3467999999998
Q ss_pred CCCCCCc-ccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCC----CCCCCcCCCCCCCCCCChHHHHH
Q 013226 189 PASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQH----PQAETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 189 ~~~~~~~-~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~----~~~e~~~~~~~~~~~~~~Y~~sK 262 (447)
....... ..++...+..|+.++.+|+++|++.++ +|||+||..+|+..... ++.|+.. .+..|.+.|+.+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~---~p~~p~s~Yg~sK 171 (370)
T PLN02695 95 DMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDA---WPAEPQDAYGLEK 171 (370)
T ss_pred ccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccC---CCCCCCCHHHHHH
Confidence 6532221 223455678999999999999999998 99999999999864321 3444421 2556778999999
Q ss_pred HHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC--CchHHHHHHHHHh-CCCeEEecCCCeeEccccHHHHHHHHHHH
Q 013226 263 RTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339 (447)
Q Consensus 263 ~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~D~a~ai~~~ 339 (447)
..+|.+++.++..++++++++||+++|||+..+.. ..++..++..++. +.++.+++++++.++|+|++|++++++.+
T Consensus 172 ~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~ 251 (370)
T PLN02695 172 LATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRL 251 (370)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHH
Confidence 99999999998888999999999999999764332 2345677777665 46788899999999999999999999999
Q ss_pred HcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHH
Q 013226 340 MEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419 (447)
Q Consensus 340 l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~ 419 (447)
+++...++||+++++.+|++|+++.+.+..|.+.++...+..... .....|++|++++|||+|+++++++|+++++|++
T Consensus 252 ~~~~~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~-~~~~~d~sk~~~~lgw~p~~~l~e~i~~~~~~~~ 330 (370)
T PLN02695 252 TKSDFREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPEGV-RGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIK 330 (370)
T ss_pred HhccCCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCCCc-cccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 887666799999999999999999999999977666655543222 3456899999999999999999999999999999
Q ss_pred HHhcCCcccC
Q 013226 420 HRIFGDQKEA 429 (447)
Q Consensus 420 ~~~~~~~~~~ 429 (447)
.+....+++.
T Consensus 331 ~~~~~~~~~~ 340 (370)
T PLN02695 331 EQIEKEKAEG 340 (370)
T ss_pred HHHHhhhccc
Confidence 9887555543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=329.46 Aligned_cols=307 Identities=25% Similarity=0.413 Sum_probs=242.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCceEEEecccc-cc-----cccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV-EP-----ILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~-~~-----~~~~~d~Vih~A 187 (447)
+|+|+||||+||||++|+++|+++ |++|++++|+... .........+.++.+|+. +. .+.++|+|||+|
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a 76 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR----LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV 76 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH----HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence 368999999999999999999987 6999999985321 111122346888999987 32 345799999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCC-CCCC-CCCCChHHHHHHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWG-NVNP-IGVRSCYDEGKRTA 265 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~-~~~~-~~~~~~Y~~sK~~~ 265 (447)
+...+.....++...+++|+.++.+++++|++.+.+|||+||..+||.....+++|+... ...| ..+.+.|+.+|..+
T Consensus 77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~ 156 (347)
T PRK11908 77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLM 156 (347)
T ss_pred ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHHHHH
Confidence 976655555677888999999999999999998889999999999997655566666321 1112 13557899999999
Q ss_pred HHHHHHHHhhhCCcEEEEeeccccCCCCcc------CCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHH
Q 013226 266 ETLTMDYHRGLGIEARIARIFNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339 (447)
Q Consensus 266 E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~ 339 (447)
|.+++.++...+++++++||+++|||+... ...+++..++..+..++++.+++++++.++|+|++|++++++.+
T Consensus 157 e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~ 236 (347)
T PRK11908 157 DRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKI 236 (347)
T ss_pred HHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHH
Confidence 999999988889999999999999998532 12457788888888999888888888999999999999999999
Q ss_pred HcCCC----CCcEEecCCC-ccCHHHHHHHHHHHhCCCCcEE-------ec--CC------CCCCCCcccCChHHHHHHc
Q 013226 340 MEGDH----VGPFNLGNPG-EFTMLELAEVVQEIIDRNARIE-------FR--PN------TEDDPHKRKPDITKAKQLL 399 (447)
Q Consensus 340 l~~~~----~g~~~i~~~~-~~s~~el~~~i~~~~g~~~~~~-------~~--~~------~~~~~~~~~~d~~k~~~~l 399 (447)
++++. .++||+++++ .+|++|+++.|.+.++....+. +. +. ..........|++|++++|
T Consensus 237 ~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 316 (347)
T PRK11908 237 IENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVPKIDNTMQEL 316 (347)
T ss_pred HhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcchhccccCChHHHHHHc
Confidence 98753 3599999874 7999999999999998543321 11 11 0112234556899999999
Q ss_pred CCCccCCHHHHHHHHHHHHHHHhcCC
Q 013226 400 GWEPRVTLRKGLPLMVADFRHRIFGD 425 (447)
Q Consensus 400 G~~p~~s~~e~l~~~~~~~~~~~~~~ 425 (447)
||+|+++++|+|+++++|++.+....
T Consensus 317 Gw~p~~~l~~~l~~~~~~~~~~~~~~ 342 (347)
T PRK11908 317 GWAPKTTMDDALRRIFEAYRGHVAEA 342 (347)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998776543
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=326.33 Aligned_cols=306 Identities=24% Similarity=0.320 Sum_probs=241.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc-cccccc-----cCCCceEEEeccccccc-----cc--C
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK-DNLIHH-----FGNPRFELIRHDVVEPI-----LL--E 179 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~-~~~~~~-----~~~~~v~~~~~D~~~~~-----~~--~ 179 (447)
.++|+||||||+||||++|+++|+++|++|++++|+..... ..+... .....+.++.+|+.+.. +. +
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 46789999999999999999999999999999998643211 111110 01235788999998753 22 4
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC------eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA------RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~------r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
+|+||||||.........++...+++|+.|+.+++++|++.++ +||++||.++||.... +++|+ .+..
T Consensus 84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~-----~~~~ 157 (340)
T PLN02653 84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSET-----TPFH 157 (340)
T ss_pred CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCC-----CCCC
Confidence 7999999997554333445677889999999999999998774 7999999999997654 67777 5667
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCCCeEE-ecCCCeeEccccHHH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEPLTV-YGDGKQTRSFQFVSD 331 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~D 331 (447)
|.+.|+.||.++|.+++.++.+++++++..|+.++|||+..... ..++..++..+..+.+..+ ++++++.++|+|++|
T Consensus 158 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D 237 (340)
T PLN02653 158 PRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGD 237 (340)
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecceeHHH
Confidence 77899999999999999999889999999999999999743211 2234445555666766554 488899999999999
Q ss_pred HHHHHHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCC--CcEEecCC--CCCCCCcccCChHHHHHHcCCCccCCH
Q 013226 332 LVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRN--ARIEFRPN--TEDDPHKRKPDITKAKQLLGWEPRVTL 407 (447)
Q Consensus 332 ~a~ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~--~~~~~~~~--~~~~~~~~~~d~~k~~~~lG~~p~~s~ 407 (447)
+|++++.+++++..+.||+++++++|+.|+++.+.+.+|.+ ..+.+.+. ...+......|++|++++|||+|++++
T Consensus 238 ~a~a~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l 317 (340)
T PLN02653 238 YVEAMWLMLQQEKPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLGWKPKVGF 317 (340)
T ss_pred HHHHHHHHHhcCCCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHHHHhCCCCCCCH
Confidence 99999999988766799999999999999999999999864 23333222 234445567899999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 013226 408 RKGLPLMVADFRHRIFG 424 (447)
Q Consensus 408 ~e~l~~~~~~~~~~~~~ 424 (447)
+|+|++++++|+.....
T Consensus 318 ~~gi~~~~~~~~~~~~~ 334 (340)
T PLN02653 318 EQLVKMMVDEDLELAKR 334 (340)
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 99999999999977653
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=327.27 Aligned_cols=301 Identities=29% Similarity=0.453 Sum_probs=236.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEE-EecCCCCCc-cccccccCCCceEEEeccccccc-----cc--CCCEEEEe
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIV-VDNYFTGKK-DNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYHL 186 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~-l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~ 186 (447)
|+||||||+||||+++++.|+++|++|++ +++...... ..+.......++.++.+|+.+.. +. ++|+||||
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 81 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHL 81 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEEC
Confidence 68999999999999999999999987654 444321110 11111111235778889987753 23 48999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC---------CC-eEEEEeCccccCCCC--CCCCCCCcCCCCCCCCC
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV---------GA-RFLLTSTSEVYGDPL--QHPQAETYWGNVNPIGV 254 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~---------g~-r~v~~SS~~v~g~~~--~~~~~e~~~~~~~~~~~ 254 (447)
||..........+.+.+++|+.|+.+++++|++. ++ +||++||.++||... ..+++|+ .+..+
T Consensus 82 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~-----~~~~p 156 (355)
T PRK10217 82 AAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTET-----TPYAP 156 (355)
T ss_pred CcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCC-----CCCCC
Confidence 9975433233456789999999999999999863 44 999999999998542 3457776 46667
Q ss_pred CChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHH
Q 013226 255 RSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 334 (447)
.+.|+.||.++|.+++.++++.+++++++||+++|||+.. ...++..++..+..++++++++++++.++|+||+|+|+
T Consensus 157 ~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~--~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~ 234 (355)
T PRK10217 157 SSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHF--PEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHAR 234 (355)
T ss_pred CChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCC--cccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHHH
Confidence 7899999999999999998889999999999999999863 34577888888888888888899999999999999999
Q ss_pred HHHHHHcCCCC-CcEEecCCCccCHHHHHHHHHHHhCCCCc------------EEecCCCCCCCCcccCChHHHHHHcCC
Q 013226 335 GLIRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEIIDRNAR------------IEFRPNTEDDPHKRKPDITKAKQLLGW 401 (447)
Q Consensus 335 ai~~~l~~~~~-g~~~i~~~~~~s~~el~~~i~~~~g~~~~------------~~~~~~~~~~~~~~~~d~~k~~~~lG~ 401 (447)
+++.+++.+.. ++||+++++.+|++|+++.+.+.++...+ +...+..........+|++|++++|||
T Consensus 235 a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~ 314 (355)
T PRK10217 235 ALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYAIDASKIARELGW 314 (355)
T ss_pred HHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcccccCHHHHHHhcCC
Confidence 99999987654 59999999999999999999999874321 111222222334567899999999999
Q ss_pred CccCCHHHHHHHHHHHHHHHhc
Q 013226 402 EPRVTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 402 ~p~~s~~e~l~~~~~~~~~~~~ 423 (447)
+|+++++|+|+++++||+.+..
T Consensus 315 ~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 315 LPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred CCcCcHHHHHHHHHHHHHhCHH
Confidence 9999999999999999987754
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=348.77 Aligned_cols=308 Identities=27% Similarity=0.457 Sum_probs=246.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCceEEEecccccc------cccCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP------ILLEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih 185 (447)
..+|+||||||+||||++|+++|+++ |++|++++|....... .....+++++.+|+++. ++.++|+|||
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViH 388 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR----FLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLP 388 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh----hcCCCceEEEeccccCcHHHHHHHhcCCCEEEE
Confidence 46789999999999999999999986 7999999986432211 11234688889999763 3468999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCC-CCCC-CCCChHHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGN-VNPI-GVRSCYDEGKR 263 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~-~~~~-~~~~~Y~~sK~ 263 (447)
+||...+..+..++.+.+++|+.++.+++++|++.+.+|||+||.++||.....+++|+.+.. ..+. .+.+.|+.||.
T Consensus 389 lAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK~ 468 (660)
T PRK08125 389 LVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSKQ 468 (660)
T ss_pred CccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHHHHH
Confidence 999876555556677889999999999999999988899999999999976566778875421 1222 24568999999
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCCCcc------CCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHH
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~ 337 (447)
.+|.+++.+++.++++++++||+++|||++.. ....++..++..+..++++.+++++++.++|+|++|+|++++
T Consensus 469 ~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~ 548 (660)
T PRK08125 469 LLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALF 548 (660)
T ss_pred HHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHH
Confidence 99999999988889999999999999998632 123567888888888888888899899999999999999999
Q ss_pred HHHcCCC----CCcEEecCCC-ccCHHHHHHHHHHHhCCCCcEEecCCC---------------CCCCCcccCChHHHHH
Q 013226 338 RLMEGDH----VGPFNLGNPG-EFTMLELAEVVQEIIDRNARIEFRPNT---------------EDDPHKRKPDITKAKQ 397 (447)
Q Consensus 338 ~~l~~~~----~g~~~i~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~~---------------~~~~~~~~~d~~k~~~ 397 (447)
.++++.. .++||+++++ .+|++|+++.+.+.+|.+......+.. ..+......|++|+++
T Consensus 549 ~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~ 628 (660)
T PRK08125 549 RIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARR 628 (660)
T ss_pred HHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccccccccccccccCCChHHHHH
Confidence 9998752 3489999985 799999999999999853211111110 1123344679999999
Q ss_pred HcCCCccCCHHHHHHHHHHHHHHHhcC
Q 013226 398 LLGWEPRVTLRKGLPLMVADFRHRIFG 424 (447)
Q Consensus 398 ~lG~~p~~s~~e~l~~~~~~~~~~~~~ 424 (447)
+|||+|+++++|+|+++++|++++...
T Consensus 629 ~LGw~P~~~lee~l~~~i~~~~~~~~~ 655 (660)
T PRK08125 629 LLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999977643
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=330.38 Aligned_cols=310 Identities=27% Similarity=0.327 Sum_probs=237.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc------c----------ccc--ccCCCceEEEeccc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD------N----------LIH--HFGNPRFELIRHDV 172 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~------~----------~~~--~~~~~~v~~~~~D~ 172 (447)
...++|+||||||+||||++|+++|+++|++|++++|......+ . +.. .....+++++.+|+
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl 122 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI 122 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence 35688999999999999999999999999999999864221110 0 000 00123588999999
Q ss_pred cccc-----cc--CCCEEEEeccCCCCCCcccC---hHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCCC
Q 013226 173 VEPI-----LL--EVDQIYHLACPASPVHYKFN---PVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHP 240 (447)
Q Consensus 173 ~~~~-----~~--~~d~Vih~Ag~~~~~~~~~~---~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~~ 240 (447)
.+.. +. ++|+|||+|+.........+ ....+++|+.|+.+++++|++.++ +||++||.++||... .+
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~ 201 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-ID 201 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CC
Confidence 8763 22 58999999986433222222 234678999999999999999885 799999999999643 23
Q ss_pred CCCCcCC-------C--CCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC---------------
Q 013226 241 QAETYWG-------N--VNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID--------------- 296 (447)
Q Consensus 241 ~~e~~~~-------~--~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~--------------- 296 (447)
++|.... + ..+..|.+.|+.||.++|.+++.+++.++++++++||+++|||++...
T Consensus 202 ~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~ 281 (442)
T PLN02572 202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGV 281 (442)
T ss_pred CcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccc
Confidence 3332110 0 024556788999999999999999998999999999999999986431
Q ss_pred CCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC-CC---cEEecCCCccCHHHHHHHHHHH---h
Q 013226 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH-VG---PFNLGNPGEFTMLELAEVVQEI---I 369 (447)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~-~g---~~~i~~~~~~s~~el~~~i~~~---~ 369 (447)
...++..++..+..++++.+++++++.++|+||+|+|++++.++++.. .| +||+++ +.+|+.|+++.+.+. +
T Consensus 282 ~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs-~~~si~el~~~i~~~~~~~ 360 (442)
T PLN02572 282 FGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFT-EQFSVNELAKLVTKAGEKL 360 (442)
T ss_pred hhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCC-CceeHHHHHHHHHHHHHhh
Confidence 024567778888888888899999999999999999999999998652 33 799976 689999999999999 8
Q ss_pred CCCCcEEecCCCCC--CCCcccCChHHHHHHcCCCccC---CHHHHHHHHHHHHHHHhc
Q 013226 370 DRNARIEFRPNTED--DPHKRKPDITKAKQLLGWEPRV---TLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 370 g~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lG~~p~~---s~~e~l~~~~~~~~~~~~ 423 (447)
|.+..+.+.+.... .......|.+|+++ |||+|++ +++|+|.+++.||+.+..
T Consensus 361 g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~-LGw~p~~~~~~l~~~l~~~~~~~~~~~~ 418 (442)
T PLN02572 361 GLDVEVISVPNPRVEAEEHYYNAKHTKLCE-LGLEPHLLSDSLLDSLLNFAVKYKDRVD 418 (442)
T ss_pred CCCCCeeeCCCCcccccccccCccHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHhhcc
Confidence 87766666553322 22345678999985 9999998 899999999999986543
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=320.03 Aligned_cols=304 Identities=24% Similarity=0.321 Sum_probs=237.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----cc--CCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih 185 (447)
+++|+||||||+||||+++++.|+++|++|++++|+...............++.++.+|+.+.. +. ++|+|||
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih 81 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH 81 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence 3678999999999999999999999999999999865432211110101225677888987753 22 4799999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCC-CCCCCCCcCCCCCCCCCCChHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPL-QHPQAETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~-~~~~~e~~~~~~~~~~~~~~Y~~sK 262 (447)
+||.........++...+++|+.++.+++++|++.+ + +||++||..+|+... ..+++|+ .+..|.+.|+.+|
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~-----~~~~p~~~Y~~sK 156 (349)
T TIGR02622 82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRET-----DPLGGHDPYSSSK 156 (349)
T ss_pred CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccC-----CCCCCCCcchhHH
Confidence 999654433445677899999999999999998876 5 899999999998643 2345666 4556778999999
Q ss_pred HHHHHHHHHHHhhh-------CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHH
Q 013226 263 RTAETLTMDYHRGL-------GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 263 ~~~E~~~~~~~~~~-------~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a 335 (447)
.++|.+++.+++++ +++++++||+++|||++. ....+++.++..+..++++.+ +++++.++|+|++|+|++
T Consensus 157 ~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~-~~~~~~~~~~~~~~~g~~~~~-~~g~~~rd~i~v~D~a~a 234 (349)
T TIGR02622 157 ACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDW-AEDRLIPDVIRAFSSNKIVII-RNPDATRPWQHVLEPLSG 234 (349)
T ss_pred HHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcc-hhhhhhHHHHHHHhcCCCeEE-CCCCcccceeeHHHHHHH
Confidence 99999999987654 899999999999999752 234677888888888887765 567889999999999999
Q ss_pred HHHHHcCC------CCCcEEecCC--CccCHHHHHHHHHHHhCC-CCcEEecC--CCCCCCCcccCChHHHHHHcCCCcc
Q 013226 336 LIRLMEGD------HVGPFNLGNP--GEFTMLELAEVVQEIIDR-NARIEFRP--NTEDDPHKRKPDITKAKQLLGWEPR 404 (447)
Q Consensus 336 i~~~l~~~------~~g~~~i~~~--~~~s~~el~~~i~~~~g~-~~~~~~~~--~~~~~~~~~~~d~~k~~~~lG~~p~ 404 (447)
++.++++. ..++||++++ ++++..|+++.+.+.++. +..+...+ ....+.....+|++|++++|||+|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~ 314 (349)
T TIGR02622 235 YLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTLLGWHPR 314 (349)
T ss_pred HHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHHHHHhCCCCC
Confidence 99887641 2469999974 689999999999987753 33343321 2233344567899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 013226 405 VTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 405 ~s~~e~l~~~~~~~~~~~~ 423 (447)
++++++|+++++|++....
T Consensus 315 ~~l~~gi~~~i~w~~~~~~ 333 (349)
T TIGR02622 315 WGLEEAVSRTVDWYKAWLR 333 (349)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999999987743
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=296.34 Aligned_cols=299 Identities=27% Similarity=0.451 Sum_probs=250.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCC-CccccccccCCCceEEEecccccccc-------cCCCEEEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTG-KKDNLIHHFGNPRFELIRHDVVEPIL-------LEVDQIYH 185 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~~-------~~~d~Vih 185 (447)
++++||||.||||++.+..+...- +..+.++.-.-. ....+......++..+++.|+.+... ..+|.|+|
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vih 86 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIH 86 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhh
Confidence 789999999999999999999873 455555532111 12222223345789999999987743 35899999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCCCCCCC-CCcCCCCCCCCCCChHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQA-ETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~~~~~~-e~~~~~~~~~~~~~~Y~~sK 262 (447)
.|+.......-.++.+....|+.++..|+++++..| + +|||+||..|||+......+ |. ....|.++|+++|
T Consensus 87 faa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~-----s~~nPtnpyAasK 161 (331)
T KOG0747|consen 87 FAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEA-----SLLNPTNPYAASK 161 (331)
T ss_pred hHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccccc-----ccCCCCCchHHHH
Confidence 999877666666788899999999999999999996 4 99999999999998776666 55 6778889999999
Q ss_pred HHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcC
Q 013226 263 RTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 263 ~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
+++|.++++|.++++++++++|.++||||++ .+..+++.|+.....+.+.++.|++.+.++|+||+|+++++..++++
T Consensus 162 aAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q--~~~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~K 239 (331)
T KOG0747|consen 162 AAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQ--YPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEK 239 (331)
T ss_pred HHHHHHHHHHhhccCCcEEEEeccCccCCCc--ChHHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999997 45678889999899999999999999999999999999999999999
Q ss_pred CCC-CcEEecCCCccCHHHHHHHHHHHhCCCC-------cEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHH
Q 013226 343 DHV-GPFNLGNPGEFTMLELAEVVQEIIDRNA-------RIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLM 414 (447)
Q Consensus 343 ~~~-g~~~i~~~~~~s~~el~~~i~~~~g~~~-------~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~ 414 (447)
+.. .+|||++..+.+..|+++.|.+.+.... .+.+.+..........++.+|++ .|||+|+++|++||+.+
T Consensus 240 g~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik-~LGw~~~~p~~eGLrkt 318 (331)
T KOG0747|consen 240 GELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIK-KLGWRPTTPWEEGLRKT 318 (331)
T ss_pred CCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHH-hcCCcccCcHHHHHHHH
Confidence 764 5999999999999999999999886522 23344444444555788999999 69999999999999999
Q ss_pred HHHHHHHh
Q 013226 415 VADFRHRI 422 (447)
Q Consensus 415 ~~~~~~~~ 422 (447)
++||.++-
T Consensus 319 ie~y~~~~ 326 (331)
T KOG0747|consen 319 IEWYTKNF 326 (331)
T ss_pred HHHHHhhh
Confidence 99998764
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=316.69 Aligned_cols=298 Identities=20% Similarity=0.285 Sum_probs=225.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccc-----cccCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEP-----ILLEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~-----~~~~~d~Vih 185 (447)
+++|+|+||||+||||++|+++|+++|++|++++|............. ...++.++.+|+.+. ++.++|+|||
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 87 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH 87 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence 467899999999999999999999999999999986442211100111 113578888898764 3567999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCc-cccCCCCC---CCCCCCcCCCCC-CCCCCChHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS-EVYGDPLQ---HPQAETYWGNVN-PIGVRSCYD 259 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~-~v~g~~~~---~~~~e~~~~~~~-~~~~~~~Y~ 259 (447)
+|+.. ..++.+.+++|+.|+.+++++|++.++ |||++||. ++||.+.. .+++|+.|.+.. +..+.+.|+
T Consensus 88 ~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~ 162 (342)
T PLN02214 88 TASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYC 162 (342)
T ss_pred ecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHH
Confidence 99864 235678899999999999999999997 99999996 58975432 357888775432 344668899
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHH
Q 013226 260 EGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339 (447)
Q Consensus 260 ~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~ 339 (447)
.||..+|.+++.+.++.+++++++||++||||+........+..++ ..+.+.... ++ +..++||||+|+|++++.+
T Consensus 163 ~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~-~~~~g~~~~-~~--~~~~~~i~V~Dva~a~~~a 238 (342)
T PLN02214 163 YGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVL-KYLTGSAKT-YA--NLTQAYVDVRDVALAHVLV 238 (342)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCccc-CC--CCCcCeeEHHHHHHHHHHH
Confidence 9999999999999888899999999999999986432222233333 344454332 33 3568999999999999999
Q ss_pred HcCCC-CCcEEecCCCccCHHHHHHHHHHHhCC-CCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHH
Q 013226 340 MEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDR-NARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417 (447)
Q Consensus 340 l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~ 417 (447)
++++. .|.||+++ +.+++.|+++.+.+.++. +.+....+..........+|++|++ +|||+|. +++|+|+++++|
T Consensus 239 l~~~~~~g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~LG~~p~-~lee~i~~~~~~ 315 (342)
T PLN02214 239 YEAPSASGRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIK-DLGLEFT-STKQSLYDTVKS 315 (342)
T ss_pred HhCcccCCcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcHHHH-HcCCccc-CHHHHHHHHHHH
Confidence 98764 46999986 578999999999999853 2222222212223344568999998 5999995 999999999999
Q ss_pred HHHHh
Q 013226 418 FRHRI 422 (447)
Q Consensus 418 ~~~~~ 422 (447)
+++..
T Consensus 316 ~~~~~ 320 (342)
T PLN02214 316 LQEKG 320 (342)
T ss_pred HHHcC
Confidence 98664
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=316.93 Aligned_cols=300 Identities=27% Similarity=0.461 Sum_probs=233.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCe-EEEEecCCC-CCccccccccCCCceEEEeccccccc-----cc--CCCEEEEe
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFT-GKKDNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYHL 186 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~-V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~ 186 (447)
|+||||||+||||++|+++|+++|+. |+++++... ...+.........++.++.+|+++.. +. ++|+|||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL 80 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence 57999999999999999999999976 555555321 11111111111235677888988753 22 48999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC---------CC-eEEEEeCccccCCCCC----------CCCCCCcC
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV---------GA-RFLLTSTSEVYGDPLQ----------HPQAETYW 246 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~---------g~-r~v~~SS~~v~g~~~~----------~~~~e~~~ 246 (447)
||.........++.+.+++|+.|+.+++++|++. ++ +||++||.++||.... .+++|+
T Consensus 81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~-- 158 (352)
T PRK10084 81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTET-- 158 (352)
T ss_pred CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCcccc--
Confidence 9975433333456789999999999999999874 34 8999999999986321 124555
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
.+..|.+.|+.||.++|.+++.++++++++++++||+++|||+.. ...++..++..+..++.+.+++++++.++|
T Consensus 159 ---~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 233 (352)
T PRK10084 159 ---TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHF--PEKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (352)
T ss_pred ---CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcC--ccchHHHHHHHHhcCCCeEEeCCCCeEEee
Confidence 566777899999999999999998889999999999999999852 245677788888888888888999999999
Q ss_pred ccHHHHHHHHHHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCCCc--------EEecCCCCCCCCcccCChHHHHH
Q 013226 327 QFVSDLVEGLIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNAR--------IEFRPNTEDDPHKRKPDITKAKQ 397 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~--------~~~~~~~~~~~~~~~~d~~k~~~ 397 (447)
+||+|+|++++.+++++. .+.||+++++.+++.|+++.+.+.++...+ +...+..........+|++|+++
T Consensus 234 v~v~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 313 (352)
T PRK10084 234 LYVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDASKISR 313 (352)
T ss_pred EEHHHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCCceeeeCHHHHHH
Confidence 999999999999998764 369999999999999999999999985321 11111122233345689999999
Q ss_pred HcCCCccCCHHHHHHHHHHHHHHHh
Q 013226 398 LLGWEPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 398 ~lG~~p~~s~~e~l~~~~~~~~~~~ 422 (447)
+|||+|+++++|+|+++++|++++.
T Consensus 314 ~lg~~p~~~l~~~l~~~~~~~~~~~ 338 (352)
T PRK10084 314 ELGWKPQETFESGIRKTVEWYLANT 338 (352)
T ss_pred HcCCCCcCCHHHHHHHHHHHHHhCH
Confidence 9999999999999999999998753
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=314.27 Aligned_cols=306 Identities=24% Similarity=0.360 Sum_probs=238.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---cccccc--CCCceEEEeccccccc-----c--cC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHHF--GNPRFELIRHDVVEPI-----L--LE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~D~~~~~-----~--~~ 179 (447)
++++|+|+||||+||||++|+++|+++|++|++++|....... ...... ...++.++.+|+.+.. + .+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 4577899999999999999999999999999999875322111 111110 1235778889987753 2 26
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChH
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCY 258 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y 258 (447)
+|+|||+||.........++...+++|+.++.+++++|++.++ +||++||..+||.....+++|+ .+..+.+.|
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~~~~~Y 156 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEE-----FPLSATNPY 156 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCCHH
Confidence 8999999996543333346778999999999999999999887 9999999999987666778888 566677899
Q ss_pred HHHHHHHHHHHHHHHhh-hCCcEEEEeeccccCCCCcc----CC---CchHHHHHHHHHhCC--CeEEec------CCCe
Q 013226 259 DEGKRTAETLTMDYHRG-LGIEARIARIFNTYGPRMCI----DD---GRVVSNFVAQALRKE--PLTVYG------DGKQ 322 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~-~~i~~~ivRp~~i~Gp~~~~----~~---~~~~~~~~~~~~~~~--~~~~~~------~~~~ 322 (447)
+.+|..+|.+++.++.. .+++++++|++++||+.... .. ...+..++..+..++ .+.+++ ++.+
T Consensus 157 ~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 236 (352)
T PLN02240 157 GRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTG 236 (352)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCE
Confidence 99999999999988654 58999999999999975321 11 111223444555443 455555 6688
Q ss_pred eEccccHHHHHHHHHHHHcCC-----C-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHH
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD-----H-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAK 396 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~-----~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 396 (447)
.++|+|++|+|++++.++++. . .++||+++++++|++|+++.+.+.+|.+.++...+....+......|++|++
T Consensus 237 ~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 316 (352)
T PLN02240 237 VRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPRRPGDAEEVYASTEKAE 316 (352)
T ss_pred EEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCCCCCChhhhhcCHHHHH
Confidence 899999999999999888632 2 2599999999999999999999999987777666655455555667999999
Q ss_pred HHcCCCccCCHHHHHHHHHHHHHHHh
Q 013226 397 QLLGWEPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 397 ~~lG~~p~~s~~e~l~~~~~~~~~~~ 422 (447)
++|||+|+++++|+|+++++|++++.
T Consensus 317 ~~lg~~p~~~l~~~l~~~~~~~~~~~ 342 (352)
T PLN02240 317 KELGWKAKYGIDEMCRDQWNWASKNP 342 (352)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999998863
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=339.42 Aligned_cols=302 Identities=27% Similarity=0.434 Sum_probs=241.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEecCCCC-CccccccccCCCceEEEecccccccc-------cCCCE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFTG-KKDNLIHHFGNPRFELIRHDVVEPIL-------LEVDQ 182 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~--G~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~~-------~~~d~ 182 (447)
.++|+||||||+||||++|+++|+++ |++|++++|.... ....+.......++.++.+|+.+... .++|+
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~ 83 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDT 83 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCE
Confidence 35789999999999999999999998 6799999874211 11111111123468899999987531 46999
Q ss_pred EEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCCCCC---CCCCcCCCCCCCCCCCh
Q 013226 183 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHP---QAETYWGNVNPIGVRSC 257 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~~~~---~~e~~~~~~~~~~~~~~ 257 (447)
|||+|+.........++.+.+++|+.|+.+++++|++.+ + ||||+||..+||.....+ .+|+ .+..|.+.
T Consensus 84 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~-----~~~~p~~~ 158 (668)
T PLN02260 84 IMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEA-----SQLLPTNP 158 (668)
T ss_pred EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCcccc-----CCCCCCCC
Confidence 999999765433334567788999999999999999987 5 999999999999765432 2344 34556788
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~ 337 (447)
|+.+|..+|.+++.+.++++++++++||++||||++. ...++..++..+..++++++++++.+.++|+||+|+|+++.
T Consensus 159 Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~--~~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~ 236 (668)
T PLN02260 159 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQF--PEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFE 236 (668)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCC--cccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHH
Confidence 9999999999999998888999999999999999853 34577788888888888999999999999999999999999
Q ss_pred HHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCCCc--EEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHH
Q 013226 338 RLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNAR--IEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLM 414 (447)
Q Consensus 338 ~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~--~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~ 414 (447)
.++++.. .++||+++++.+++.|+++.+.+.+|.+.. +...+..........+|++|++ +|||+|+++++|+|+++
T Consensus 237 ~~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~-~lGw~p~~~~~egl~~~ 315 (668)
T PLN02260 237 VVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLK-KLGWQERTSWEEGLKKT 315 (668)
T ss_pred HHHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHH-HcCCCCCCCHHHHHHHH
Confidence 9998764 469999999999999999999999997643 3333333333445568999997 59999999999999999
Q ss_pred HHHHHHHh
Q 013226 415 VADFRHRI 422 (447)
Q Consensus 415 ~~~~~~~~ 422 (447)
++|++++.
T Consensus 316 i~w~~~~~ 323 (668)
T PLN02260 316 MEWYTSNP 323 (668)
T ss_pred HHHHHhCh
Confidence 99998764
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=309.22 Aligned_cols=272 Identities=21% Similarity=0.211 Sum_probs=219.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----ccc--CCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILL--EVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~Ag 188 (447)
|+||||||+||||++++++|+++| +|++++|... .+.+|+++. .+. ++|+|||||+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~----------------~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa 63 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST----------------DYCGDFSNPEGVAETVRKIRPDVIVNAAA 63 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc----------------cccCCCCCHHHHHHHHHhcCCCEEEECCc
Confidence 579999999999999999999999 7998887421 123455543 333 5899999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
.......+.++...+++|+.++.+++++|++.|+++||+||..||+.....+++|+ .+..|.+.|+.+|..+|.+
T Consensus 64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~~~~~p~~E~-----~~~~P~~~Yg~sK~~~E~~ 138 (299)
T PRK09987 64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPGTGDIPWQET-----DATAPLNVYGETKLAGEKA 138 (299)
T ss_pred cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEECCCCCCCcCCC-----CCCCCCCHHHHHHHHHHHH
Confidence 87665566677888899999999999999999999999999999988766788888 5677788999999999999
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecC--CCeeEccccHHHHHHHHHHHHcCC-CC
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD--GKQTRSFQFVSDLVEGLIRLMEGD-HV 345 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~D~a~ai~~~l~~~-~~ 345 (447)
+..+. .+.+++||+++|||++ ..++..++..+..++++.++++ +.+.+.+.+++|++.++..++++. ..
T Consensus 139 ~~~~~----~~~~ilR~~~vyGp~~----~~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~~~ 210 (299)
T PRK09987 139 LQEHC----AKHLIFRTSWVYAGKG----NNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPEVA 210 (299)
T ss_pred HHHhC----CCEEEEecceecCCCC----CCHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCCCC
Confidence 97754 3679999999999974 3567788887878888888887 555566677788888888877654 34
Q ss_pred CcEEecCCCccCHHHHHHHHHHHh---CCCC---cEEec-----CCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHH
Q 013226 346 GPFNLGNPGEFTMLELAEVVQEII---DRNA---RIEFR-----PNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLM 414 (447)
Q Consensus 346 g~~~i~~~~~~s~~el~~~i~~~~---g~~~---~~~~~-----~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~ 414 (447)
|+||+++++.+|+.|+++.|.+.. |.+. .+... +.....+.+..+|++|+++.|||+|. +|+|+|+++
T Consensus 211 giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~-~~~~~l~~~ 289 (299)
T PRK09987 211 GLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLP-DWQVGVKRM 289 (299)
T ss_pred CeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCc-cHHHHHHHH
Confidence 799999999999999999998864 3332 22222 23345677788999999999999987 999999999
Q ss_pred HHHH
Q 013226 415 VADF 418 (447)
Q Consensus 415 ~~~~ 418 (447)
++.+
T Consensus 290 ~~~~ 293 (299)
T PRK09987 290 LTEL 293 (299)
T ss_pred HHHH
Confidence 9754
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=306.09 Aligned_cols=298 Identities=33% Similarity=0.535 Sum_probs=236.6
Q ss_pred eEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCC-ccccccccCCCceEEEeccccccc-----ccC--CCEEEEe
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGK-KDNLIHHFGNPRFELIRHDVVEPI-----LLE--VDQIYHL 186 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~-----~~~--~d~Vih~ 186 (447)
+|+|||||||||++++++|+++| ++|++++|..... .+.+.......++.++.+|+.++. +.+ +|+|||+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~ 80 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF 80 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence 48999999999999999999987 6899887642211 111111112236778888987753 344 8999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC--CeEEEEeCccccCCCCCC-CCCCCcCCCCCCCCCCChHHHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQH-PQAETYWGNVNPIGVRSCYDEGKR 263 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--~r~v~~SS~~v~g~~~~~-~~~e~~~~~~~~~~~~~~Y~~sK~ 263 (447)
|+.........++...+++|+.++.+++++|++.+ +++|++||..+||..... +++|+ .+..+.+.|+.+|.
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~-----~~~~~~~~Y~~sK~ 155 (317)
T TIGR01181 81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTET-----TPLAPSSPYSASKA 155 (317)
T ss_pred ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCC-----CCCCCCCchHHHHH
Confidence 99754333334567789999999999999999864 499999999999865433 56666 45566688999999
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.+|.+++.++.+.+++++++||+.+|||... ...++..++..+..+.+++++++++..++|+|++|+|+++..++++.
T Consensus 156 ~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~ 233 (317)
T TIGR01181 156 ASDHLVRAYHRTYGLPALITRCSNNYGPYQF--PEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKG 233 (317)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccccCCCCC--cccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCC
Confidence 9999999998888999999999999999753 24677888888888888888888888999999999999999999876
Q ss_pred CC-CcEEecCCCccCHHHHHHHHHHHhCCCCcE-EecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHH
Q 013226 344 HV-GPFNLGNPGEFTMLELAEVVQEIIDRNARI-EFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 344 ~~-g~~~i~~~~~~s~~el~~~i~~~~g~~~~~-~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~ 421 (447)
.. ++||+++++++++.|+++.+.+.++.+..+ ...+...........|++|++++|||+|+++++++++++++||+++
T Consensus 234 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~~~~~~ 313 (317)
T TIGR01181 234 RVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFEEGLRKTVQWYLDN 313 (317)
T ss_pred CCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhc
Confidence 54 599999999999999999999999865432 2222222222334589999999999999999999999999999765
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=306.52 Aligned_cols=300 Identities=25% Similarity=0.418 Sum_probs=232.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc--cccCCCceEEEeccccccc-----cc--CCCEEEEe
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI--HHFGNPRFELIRHDVVEPI-----LL--EVDQIYHL 186 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~ 186 (447)
|+|+||||+||||++++++|+++|++|++++|.......... ......++.++.+|+.+.. +. ++|+|||+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 579999999999999999999999999999864332221111 1112235677888887653 22 58999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCC-CCCChHHHHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI-GVRSCYDEGKRT 264 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~-~~~~~Y~~sK~~ 264 (447)
|+..........+.+.+++|+.++.+++++|++.++ +||++||.++||.....+++|+ .+. .+.+.|+.+|..
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~-----~~~~~p~~~Y~~sK~~ 155 (338)
T PRK10675 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVES-----FPTGTPQSPYGKSKLM 155 (338)
T ss_pred CccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccc-----cCCCCCCChhHHHHHH
Confidence 987543333345667899999999999999999987 8999999999997666777787 343 466899999999
Q ss_pred HHHHHHHHHhhh-CCcEEEEeeccccCCCCc----cC----CCchHHHHHHHHHhC--CCeEEec------CCCeeEccc
Q 013226 265 AETLTMDYHRGL-GIEARIARIFNTYGPRMC----ID----DGRVVSNFVAQALRK--EPLTVYG------DGKQTRSFQ 327 (447)
Q Consensus 265 ~E~~~~~~~~~~-~i~~~ivRp~~i~Gp~~~----~~----~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~i 327 (447)
+|.+++.+++.. +++++++|++++|||... .+ ...++. ++..+..+ ..+.+++ ++.+.++|+
T Consensus 156 ~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v 234 (338)
T PRK10675 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMP-YIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI 234 (338)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHH-HHHHHHhcCCCceEEeCCcCCCCCCcEEEeeE
Confidence 999999987654 899999999999997421 11 112333 33444433 2355554 567889999
Q ss_pred cHHHHHHHHHHHHcCC---C-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCc
Q 013226 328 FVSDLVEGLIRLMEGD---H-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~---~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 403 (447)
|++|+|++++.+++.. . .++||+++++.+|+.|+++.+.+.+|.+..+...+....+....++|++|+++++||+|
T Consensus 235 ~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~lg~~p 314 (338)
T PRK10675 235 HVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRV 314 (338)
T ss_pred EHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCCCCCchhhhhcCHHHHHHHhCCCC
Confidence 9999999999998752 2 25999999999999999999999999887766655544455566789999999999999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 013226 404 RVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 404 ~~s~~e~l~~~~~~~~~~ 421 (447)
+++++++|+++++|++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~ 332 (338)
T PRK10675 315 TRTLDEMAQDTWHWQSRH 332 (338)
T ss_pred cCcHHHHHHHHHHHHHhh
Confidence 999999999999999876
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=305.65 Aligned_cols=289 Identities=22% Similarity=0.317 Sum_probs=216.2
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEe---c-ccccccc-----cCCCEEEEecc
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIR---H-DVVEPIL-----LEVDQIYHLAC 188 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~---~-D~~~~~~-----~~~d~Vih~Ag 188 (447)
||||||+||||++|+++|+++|++++++.|+...... .... ..++..+ . ++.+..+ .++|+|||+||
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~ 77 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVNL---VDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGA 77 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH-HHhh---hhhhhhhhhhHHHHHHHHhcccccCCccEEEECce
Confidence 8999999999999999999999977776554322111 0000 0111111 1 1112122 26899999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
..... ..++...++.|+.++.+|+++|++.+++|||+||.++||.....+.+|+ .+..|.+.|+.+|..+|++
T Consensus 78 ~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~ 150 (308)
T PRK11150 78 CSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTDDFIEER-----EYEKPLNVYGYSKFLFDEY 150 (308)
T ss_pred ecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhCcCCCCCCccC-----CCCCCCCHHHHHHHHHHHH
Confidence 64432 2245568999999999999999999889999999999997655566666 4556678899999999999
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCC--CchHHHHHHHHHhCCCeEEe-cCCCeeEccccHHHHHHHHHHHHcCCCC
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVY-GDGKQTRSFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~D~a~ai~~~l~~~~~ 345 (447)
++.+..+.+++++++||+++|||+..... ..+...++..+.++....++ ++++..++|+||+|+|++++.++++...
T Consensus 151 ~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~~~ 230 (308)
T PRK11150 151 VRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWENGVS 230 (308)
T ss_pred HHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhcCCC
Confidence 99998888999999999999999864321 22344555667777665555 5566789999999999999999987766
Q ss_pred CcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCC----CCCcccCChHHHHHHcCCCcc-CCHHHHHHHHHHHHH
Q 013226 346 GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED----DPHKRKPDITKAKQLLGWEPR-VTLRKGLPLMVADFR 419 (447)
Q Consensus 346 g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~----~~~~~~~d~~k~~~~lG~~p~-~s~~e~l~~~~~~~~ 419 (447)
++||+++++.+|+.|+++.+.+.++.. .+...+.+.. ......+|++|+++ +||+|. .+++|+|+++++|+.
T Consensus 231 ~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~-~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 231 GIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDKLKGRYQAFTQADLTKLRA-AGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred CeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccccccccceecccCHHHHHh-cCCCCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999999999853 2322222211 12234689999996 799987 499999999999975
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=303.10 Aligned_cols=289 Identities=24% Similarity=0.367 Sum_probs=223.5
Q ss_pred EEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccccc--CCCEEEEeccCCCCC-Cc
Q 013226 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL--EVDQIYHLACPASPV-HY 195 (447)
Q Consensus 119 lVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~Ag~~~~~-~~ 195 (447)
|||||+||||++|++.|+++|++|+++.++. ..++.+.+..+..+. ++|+|||||+..... ..
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~~--------------~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~ 66 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHK--------------ELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHAN 66 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeeccc--------------cCCCCCHHHHHHHHhccCCCEEEEeeeeecccchh
Confidence 6999999999999999999999888764321 112222222222222 579999999975422 22
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCC-hHHHHHHHHHHHHHHHH
Q 013226 196 KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRS-CYDEGKRTAETLTMDYH 273 (447)
Q Consensus 196 ~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~ 273 (447)
..++.+.++.|+.++.+|+++|++.++ +||++||..+||.....+++|+++.+ .+..|.+ .|+.+|..+|.+++.+.
T Consensus 67 ~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK~~~e~~~~~~~ 145 (306)
T PLN02725 67 MTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLT-GPPEPTNEWYAIAKIAGIKMCQAYR 145 (306)
T ss_pred hhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhcc-CCCCCCcchHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999997 99999999999976677888886432 1333333 59999999999999998
Q ss_pred hhhCCcEEEEeeccccCCCCccC--CCchHHHHHH----HHHhCCCeEE-ecCCCeeEccccHHHHHHHHHHHHcCCC-C
Q 013226 274 RGLGIEARIARIFNTYGPRMCID--DGRVVSNFVA----QALRKEPLTV-YGDGKQTRSFQFVSDLVEGLIRLMEGDH-V 345 (447)
Q Consensus 274 ~~~~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~i~v~D~a~ai~~~l~~~~-~ 345 (447)
+..+++++++||+++|||+.... .+.++..++. ....+.++.. ++++.+.++|+|++|++++++.++++.. .
T Consensus 146 ~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~~~~ 225 (306)
T PLN02725 146 IQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYSGA 225 (306)
T ss_pred HHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhccccC
Confidence 88899999999999999985321 2334444443 3345566655 7888889999999999999999998753 3
Q ss_pred CcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHhc
Q 013226 346 GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 346 g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~~ 423 (447)
+.||+++++.+++.|+++.+.+.++.+..+...+..........+|++|++ .+||+|+++++|+|+++++|+++++.
T Consensus 226 ~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~~~~~ 302 (306)
T PLN02725 226 EHVNVGSGDEVTIKELAELVKEVVGFEGELVWDTSKPDGTPRKLMDSSKLR-SLGWDPKFSLKDGLQETYKWYLENYE 302 (306)
T ss_pred cceEeCCCCcccHHHHHHHHHHHhCCCCceeecCCCCCcccccccCHHHHH-HhCCCCCCCHHHHHHHHHHHHHhhhh
Confidence 689999999999999999999999987666654443333445678999997 48999999999999999999998764
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=305.27 Aligned_cols=304 Identities=19% Similarity=0.227 Sum_probs=222.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc--ccccccCCCceEEEeccccccc-----ccCCCEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD--NLIHHFGNPRFELIRHDVVEPI-----LLEVDQIY 184 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~--~~~~~~~~~~v~~~~~D~~~~~-----~~~~d~Vi 184 (447)
+.++|+|+||||+||||++|+++|+++|++|++++|+...... .........++.++.+|+.+.. +.++|+||
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 4467899999999999999999999999999998886432211 0000111125788899987753 45799999
Q ss_pred EeccCCCCCCcccCh-HHHHHHHHHHHHHHHHHHHHC-CC-eEEEEeCccccCCCC----CCCCCCCcCCCC----CCCC
Q 013226 185 HLACPASPVHYKFNP-VKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPL----QHPQAETYWGNV----NPIG 253 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~-~~~~~~Nv~gt~~ll~aa~~~-g~-r~v~~SS~~v~g~~~----~~~~~e~~~~~~----~~~~ 253 (447)
|+|+... ....++ ...+++|+.|+.++++++.+. ++ +||++||.++|+... ..+++|+.|... .+..
T Consensus 86 h~A~~~~--~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~ 163 (338)
T PLN00198 86 HVATPVN--FASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKP 163 (338)
T ss_pred EeCCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCC
Confidence 9998532 112233 356799999999999999886 45 999999999998532 345667655321 1234
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEec-CCCe----eEcccc
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG-DGKQ----TRSFQF 328 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~i~ 328 (447)
|.+.|+.||.++|.+++.++++++++++++||+++|||++......++. ++..++.++.+.+.+ ++.+ .++|+|
T Consensus 164 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 242 (338)
T PLN00198 164 PTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLS-LAMSLITGNEFLINGLKGMQMLSGSISITH 242 (338)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHH-HHHHHHcCCccccccccccccccCCcceeE
Confidence 5678999999999999999988999999999999999986433333332 334556666655544 2222 369999
Q ss_pred HHHHHHHHHHHHcCCCC-CcEEecCCCccCHHHHHHHHHHHhCC-CCcEEecCCCCCCCCcccCChHHHHHHcCCCccCC
Q 013226 329 VSDLVEGLIRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEIIDR-NARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVT 406 (447)
Q Consensus 329 v~D~a~ai~~~l~~~~~-g~~~i~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s 406 (447)
|+|+|++++.+++.+.. +.| ++++..+++.|+++.+.+.++. +.+..+.+. ........|++|+++ +||+|+++
T Consensus 243 V~D~a~a~~~~~~~~~~~~~~-~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~~-~G~~p~~~ 318 (338)
T PLN00198 243 VEDVCRAHIFLAEKESASGRY-ICCAANTSVPELAKFLIKRYPQYQVPTDFGDF--PSKAKLIISSEKLIS-EGFSFEYG 318 (338)
T ss_pred HHHHHHHHHHHhhCcCcCCcE-EEecCCCCHHHHHHHHHHHCCCCCCCcccccc--CCCCccccChHHHHh-CCceecCc
Confidence 99999999999987643 577 5566789999999999998753 222222211 112345679999998 59999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 013226 407 LRKGLPLMVADFRHRI 422 (447)
Q Consensus 407 ~~e~l~~~~~~~~~~~ 422 (447)
++|+|+++++||+++.
T Consensus 319 l~~gi~~~~~~~~~~~ 334 (338)
T PLN00198 319 IEEIYDQTVEYFKAKG 334 (338)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999998653
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=301.10 Aligned_cols=299 Identities=19% Similarity=0.221 Sum_probs=222.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc----cCCCceEEEeccccccc-----ccCCCEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH----FGNPRFELIRHDVVEPI-----LLEVDQIY 184 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~----~~~~~v~~~~~D~~~~~-----~~~~d~Vi 184 (447)
.+|+||||||+||||++++++|+++|++|++++|+...... .... ....++.++.+|+++.. +.++|+||
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKK-TDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhh-HHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 47899999999999999999999999999998886543211 1110 01236788899998763 45799999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEeCccccCCCC-----CCCCCCCcCCCCC-CCCCCC
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPL-----QHPQAETYWGNVN-PIGVRS 256 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g~-r~v~~SS~~v~g~~~-----~~~~~e~~~~~~~-~~~~~~ 256 (447)
||||.........++.+.+++|+.|+.+++++|.+. ++ +||++||.++|+.+. ..+++|+.+.+.. ...+.+
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~ 162 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ 162 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence 999965432222345678999999999999999885 45 999999998765432 3456777543211 112346
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHH
Q 013226 257 CYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 257 ~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai 336 (447)
.|+.||..+|.+++.+.++++++++++||+++|||++... ..++..++..++.++... + .+.++|+||+|+|+++
T Consensus 163 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~-~~~~~~~i~~~~~~~~~~--~--~~~r~~i~v~Dva~a~ 237 (325)
T PLN02989 163 WYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPT-LNFSVAVIVELMKGKNPF--N--TTHHRFVDVRDVALAH 237 (325)
T ss_pred chHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCC-CCchHHHHHHHHcCCCCC--C--CcCcCeeEHHHHHHHH
Confidence 8999999999999999888899999999999999987532 234455666666665432 2 2457899999999999
Q ss_pred HHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCC--CCCCCcccCChHHHHHHcCCCccCCHHHHHHH
Q 013226 337 IRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT--EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPL 413 (447)
Q Consensus 337 ~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~--~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~ 413 (447)
+.+++++. .|.||++ ++.+|++|+++.|.+.++.. .+...+.. .........|++|+++ |||.|.++++|+|++
T Consensus 238 ~~~l~~~~~~~~~ni~-~~~~s~~ei~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~-lg~~p~~~l~~gi~~ 314 (325)
T PLN02989 238 VKALETPSANGRYIID-GPVVTIKDIENVLREFFPDL-CIADRNEDITELNSVTFNVCLDKVKS-LGIIEFTPTETSLRD 314 (325)
T ss_pred HHHhcCcccCceEEEe-cCCCCHHHHHHHHHHHCCCC-CCCCCCCCcccccccCcCCCHHHHHH-cCCCCCCCHHHHHHH
Confidence 99998764 4799995 56899999999999999732 21111111 1112355789999886 999999999999999
Q ss_pred HHHHHHHH
Q 013226 414 MVADFRHR 421 (447)
Q Consensus 414 ~~~~~~~~ 421 (447)
+++|++..
T Consensus 315 ~~~~~~~~ 322 (325)
T PLN02989 315 TVLSLKEK 322 (325)
T ss_pred HHHHHHHh
Confidence 99999754
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=305.31 Aligned_cols=309 Identities=18% Similarity=0.195 Sum_probs=220.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----ccCCCEEEEe
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LLEVDQIYHL 186 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~~~d~Vih~ 186 (447)
+..+|+||||||+||||++++++|+++|++|++++|................++.++.+|+.+.. +.++|+|||+
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 86 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHV 86 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence 45788999999999999999999999999999998864322111111111246888999987653 4579999999
Q ss_pred ccCCCCCC--cccChH-----HHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCC-----CCCCCCCcCCCCC--
Q 013226 187 ACPASPVH--YKFNPV-----KTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPL-----QHPQAETYWGNVN-- 250 (447)
Q Consensus 187 Ag~~~~~~--~~~~~~-----~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~-----~~~~~e~~~~~~~-- 250 (447)
||...... ...++. ..++.|+.|+.+++++|++.+ + +||++||.++||... ..+++|+.+.+..
T Consensus 87 A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~ 166 (353)
T PLN02896 87 AASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHV 166 (353)
T ss_pred CccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHh
Confidence 99754322 122333 355667799999999998875 5 999999999998532 1356676443221
Q ss_pred --CCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCe--EEecCC---Cee
Q 013226 251 --PIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPL--TVYGDG---KQT 323 (447)
Q Consensus 251 --~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~ 323 (447)
+..+.+.|+.||.++|.+++.+.+.++++++++||+++|||++......++..++.. ..+... ..++.. ...
T Consensus 167 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~ 245 (353)
T PLN02896 167 WNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSP-ITGDSKLFSILSAVNSRMGS 245 (353)
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHH-hcCCccccccccccccccCc
Confidence 223446899999999999999998899999999999999998643323333333322 233321 111111 123
Q ss_pred EccccHHHHHHHHHHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCC-CcEEecCCCCCCCCcccCChHHHHHHcCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRN-ARIEFRPNTEDDPHKRKPDITKAKQLLGW 401 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~~lG~ 401 (447)
++||||+|+|++++.+++.+. .+.|+ +++.++++.|+++.+.+.++.. ..+...+....+. ....|+++++. |||
T Consensus 246 ~dfi~v~Dva~a~~~~l~~~~~~~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-lGw 322 (353)
T PLN02896 246 IALVHIEDICDAHIFLMEQTKAEGRYI-CCVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSI-PSEISSKKLRD-LGF 322 (353)
T ss_pred eeEEeHHHHHHHHHHHHhCCCcCccEE-ecCCCCCHHHHHHHHHHhCCCCCccccccccccCcc-ccccCHHHHHH-cCC
Confidence 689999999999999998654 45775 4578899999999999998732 2233323222222 23568888875 999
Q ss_pred CccCCHHHHHHHHHHHHHHHhcC
Q 013226 402 EPRVTLRKGLPLMVADFRHRIFG 424 (447)
Q Consensus 402 ~p~~s~~e~l~~~~~~~~~~~~~ 424 (447)
+|+++++++|+++++|++.....
T Consensus 323 ~p~~~l~~~i~~~~~~~~~~~~~ 345 (353)
T PLN02896 323 EYKYGIEEIIDQTIDCCVDHGFL 345 (353)
T ss_pred CccCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999987664
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=296.37 Aligned_cols=297 Identities=37% Similarity=0.555 Sum_probs=238.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCC-CEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEV-DQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~-d~Vih~Ag~ 189 (447)
|+||||||+||||++|+++|+++|++|++++|......... ..++++.+|+++. ...++ |+|||+|+.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEcccc
Confidence 35999999999999999999999999999999655443332 3456666666554 33455 999999997
Q ss_pred CCCCCccc-ChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCC-CCCCCCCCcCCCCCCCCCCChHHHHHHHHH
Q 013226 190 ASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDP-LQHPQAETYWGNVNPIGVRSCYDEGKRTAE 266 (447)
Q Consensus 190 ~~~~~~~~-~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~-~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E 266 (447)
........ ++...+++|+.|+.+++++|++.++ +|||+||.++|+.. ...+++|+. .+..|.+.|+.+|..+|
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~----~~~~p~~~Yg~sK~~~E 150 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDL----GPPRPLNPYGVSKLAAE 150 (314)
T ss_pred CchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCccccc----CCCCCCCHHHHHHHHHH
Confidence 65433333 3566899999999999999999787 99998888877654 333677763 34455568999999999
Q ss_pred HHHHHHHhhhCCcEEEEeeccccCCCCccCCC-chHHHHHHHHHhCCC-eEEecCCCeeEccccHHHHHHHHHHHHcCCC
Q 013226 267 TLTMDYHRGLGIEARIARIFNTYGPRMCIDDG-RVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 267 ~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~ 344 (447)
..+..+..+.+++++++||+++|||+...... .++..++.....+.+ ....+++...++++|++|++++++.+++++.
T Consensus 151 ~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 230 (314)
T COG0451 151 QLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPD 230 (314)
T ss_pred HHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCC
Confidence 99999988889999999999999999654322 456666777777776 6666777888999999999999999999876
Q ss_pred CCcEEecCCC-ccCHHHHHHHHHHHhCCCCc-EEecCC--CCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHH
Q 013226 345 VGPFNLGNPG-EFTMLELAEVVQEIIDRNAR-IEFRPN--TEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420 (447)
Q Consensus 345 ~g~~~i~~~~-~~s~~el~~~i~~~~g~~~~-~~~~~~--~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~ 420 (447)
.+.||+++++ .++++|+++.+.+.++.+.. +...+. .........+|.+|++.+|||+|.+++++++.++++|+..
T Consensus 231 ~~~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~~~~~~~~~ 310 (314)
T COG0451 231 GGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLK 310 (314)
T ss_pred CcEEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 6699999987 89999999999999998866 555442 3334446678999999999999999999999999999876
Q ss_pred Hh
Q 013226 421 RI 422 (447)
Q Consensus 421 ~~ 422 (447)
..
T Consensus 311 ~~ 312 (314)
T COG0451 311 KL 312 (314)
T ss_pred hh
Confidence 53
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=295.94 Aligned_cols=300 Identities=28% Similarity=0.471 Sum_probs=233.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----c--cCCCEEEEeccC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L--LEVDQIYHLACP 189 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~--~~~d~Vih~Ag~ 189 (447)
+|+||||+|+||++++++|+++|++|++++|......+..........+.++.+|+.+.. + .++|+||||||.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~ 80 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL 80 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence 589999999999999999999999999887643322221111111115677888887663 2 269999999997
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
........++.+.++.|+.++.+++++|++.++ +||++||.++|+.....+++|+ .+..+.+.|+.+|..+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~-----~~~~~~~~y~~sK~~~e~~ 155 (328)
T TIGR01179 81 IAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISED-----SPLGPINPYGRSKLMSERI 155 (328)
T ss_pred cCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCcccc-----CCCCCCCchHHHHHHHHHH
Confidence 644433445667889999999999999999887 9999999999987666677777 4555778999999999999
Q ss_pred HHHHHhh-hCCcEEEEeeccccCCCCcc-------CCCchHHHHHHHHH-hCCCeEEec------CCCeeEccccHHHHH
Q 013226 269 TMDYHRG-LGIEARIARIFNTYGPRMCI-------DDGRVVSNFVAQAL-RKEPLTVYG------DGKQTRSFQFVSDLV 333 (447)
Q Consensus 269 ~~~~~~~-~~i~~~ivRp~~i~Gp~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~i~v~D~a 333 (447)
++.++++ .+++++++||+++|||.... ....++..+..... ....+..++ ++...++|+|++|++
T Consensus 156 ~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a 235 (328)
T TIGR01179 156 LRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLA 235 (328)
T ss_pred HHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHH
Confidence 9999877 79999999999999986432 12234455554443 234444433 456778999999999
Q ss_pred HHHHHHHcCC----CCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCC-HH
Q 013226 334 EGLIRLMEGD----HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVT-LR 408 (447)
Q Consensus 334 ~ai~~~l~~~----~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s-~~ 408 (447)
++++.+++.. ..++||+++++++|++|+++.+.+.+|.+..+...+...........|++|++++|||+|.++ ++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~l~ 315 (328)
T TIGR01179 236 DAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASKIRRELGWQPKYTDLE 315 (328)
T ss_pred HHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCCCCccccchhcchHHHHHHhCCCCCcchHH
Confidence 9999998742 346999999999999999999999999887776656544444555679999999999999997 99
Q ss_pred HHHHHHHHHHHHH
Q 013226 409 KGLPLMVADFRHR 421 (447)
Q Consensus 409 e~l~~~~~~~~~~ 421 (447)
++|+++++|++++
T Consensus 316 ~~~~~~~~~~~~~ 328 (328)
T TIGR01179 316 IIIKTAWRWESRN 328 (328)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998764
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=294.70 Aligned_cols=289 Identities=26% Similarity=0.347 Sum_probs=222.7
Q ss_pred EEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEeccccccc---------ccCCCEEEEec
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI---------LLEVDQIYHLA 187 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---------~~~~d~Vih~A 187 (447)
||||||+||||+++++.|.++|+ +|++++|..... .+... ....+..|+.+.. +.++|+|||+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~--~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A 74 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH--KFLNL----ADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQG 74 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch--hhhhh----hheeeeccCcchhHHHHHHhhccCCCCEEEECc
Confidence 68999999999999999999998 788887643211 11111 1122334443321 24799999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAET 267 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~ 267 (447)
+.... ...++...+++|+.++.+++++|++.+++||++||.++|+... .+++|+. .+..+.+.|+.+|..+|.
T Consensus 75 ~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~-~~~~e~~----~~~~p~~~Y~~sK~~~e~ 147 (314)
T TIGR02197 75 ACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGIPFIYASSAATYGDGE-AGFREGR----ELERPLNVYGYSKFLFDQ 147 (314)
T ss_pred cccCc--cccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEccHHhcCCCC-CCccccc----CcCCCCCHHHHHHHHHHH
Confidence 96432 2345677899999999999999999888999999999998753 3455552 223467899999999999
Q ss_pred HHHHHHh--hhCCcEEEEeeccccCCCCccC--CCchHHHHHHHHHhCCCeEEe------cCCCeeEccccHHHHHHHHH
Q 013226 268 LTMDYHR--GLGIEARIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVY------GDGKQTRSFQFVSDLVEGLI 337 (447)
Q Consensus 268 ~~~~~~~--~~~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~v~D~a~ai~ 337 (447)
+++++.. ..+++++++||+++|||+.... ...++..++..+..++++.++ +++++.++|+|++|++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~ 227 (314)
T TIGR02197 148 YVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNL 227 (314)
T ss_pred HHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHH
Confidence 9988643 3467999999999999986422 134566777788888777664 45677899999999999999
Q ss_pred HHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCC----CCcccCChHHHHHHcCCCccCCHHHHHHH
Q 013226 338 RLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDD----PHKRKPDITKAKQLLGWEPRVTLRKGLPL 413 (447)
Q Consensus 338 ~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~----~~~~~~d~~k~~~~lG~~p~~s~~e~l~~ 413 (447)
.++.+...++||+++++++|++|+++.+.+.+|.+..+...+.+... .....+|++|+++++||+|+++++|+|++
T Consensus 228 ~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~p~~~l~~~l~~ 307 (314)
T TIGR02197 228 WLLENGVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAGYYGPFTTLEEGVKD 307 (314)
T ss_pred HHHhcccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHHhcCCCCcccHHHHHHH
Confidence 99988556799999999999999999999999977655554433221 12346899999999999999999999999
Q ss_pred HHHHHH
Q 013226 414 MVADFR 419 (447)
Q Consensus 414 ~~~~~~ 419 (447)
+++|++
T Consensus 308 ~~~~~~ 313 (314)
T TIGR02197 308 YVQWLL 313 (314)
T ss_pred HHHHHh
Confidence 999975
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=285.29 Aligned_cols=301 Identities=21% Similarity=0.246 Sum_probs=224.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc--cccccc-CCCceEEEecccccc-----cccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD--NLIHHF-GNPRFELIRHDVVEP-----ILLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~--~~~~~~-~~~~v~~~~~D~~~~-----~~~~~d~Vih 185 (447)
.+++|+|||||||||+||+++|+++||+|+++.|+++..+. .+...- ...+...+..|+++. ++.+||.|||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 67899999999999999999999999999999998765322 122211 133477888888665 5789999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCcccc-C----CCCCCCCCCCcCCCCCCC-CCCCh
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVY-G----DPLQHPQAETYWGNVNPI-GVRSC 257 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~-g----~~~~~~~~e~~~~~~~~~-~~~~~ 257 (447)
+|.+......+ ...++++.++.||.|++++|++.. + |||++||.+.- . ...+..++|+.|.+..-. .....
T Consensus 85 ~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~ 163 (327)
T KOG1502|consen 85 TASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLW 163 (327)
T ss_pred eCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHHH
Confidence 99876543333 355899999999999999999998 6 99999998833 2 234567899999543221 11278
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~ 337 (447)
|+.||..+|+.+++++++.+++.+.+.|+.|+||...+.. ......+...++|..-. +.+ ....|+||+|+|+|++
T Consensus 164 Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l-~~s~~~~l~~i~G~~~~-~~n--~~~~~VdVrDVA~AHv 239 (327)
T KOG1502|consen 164 YALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSL-NSSLNALLKLIKGLAET-YPN--FWLAFVDVRDVALAHV 239 (327)
T ss_pred HHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCccccc-chhHHHHHHHHhccccc-CCC--CceeeEeHHHHHHHHH
Confidence 9999999999999999999999999999999999875522 22344445566664332 222 3345999999999999
Q ss_pred HHHcCCCC-CcEEecCCCccCHHHHHHHHHHHhCCCCcEEec-CCC-CCCCCcccCChHHHHHHcCCCccCCHHHHHHHH
Q 013226 338 RLMEGDHV-GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFR-PNT-EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLM 414 (447)
Q Consensus 338 ~~l~~~~~-g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~-~~~-~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~ 414 (447)
.+++++.. |.|.+. ++..++.|+++.+.+.+..-. +... +.. ........++++|++.+.||+.. +++|++.++
T Consensus 240 ~a~E~~~a~GRyic~-~~~~~~~ei~~~l~~~~P~~~-ip~~~~~~~~~~~~~~~~~~~k~k~lg~~~~~-~l~e~~~dt 316 (327)
T KOG1502|consen 240 LALEKPSAKGRYICV-GEVVSIKEIADILRELFPDYP-IPKKNAEEHEGFLTSFKVSSEKLKSLGGFKFR-PLEETLSDT 316 (327)
T ss_pred HHHcCcccCceEEEe-cCcccHHHHHHHHHHhCCCCC-CCCCCCccccccccccccccHHHHhcccceec-ChHHHHHHH
Confidence 99999977 466665 466669999999999985432 2111 111 12222335799999985557777 999999999
Q ss_pred HHHHHHHh
Q 013226 415 VADFRHRI 422 (447)
Q Consensus 415 ~~~~~~~~ 422 (447)
++++++..
T Consensus 317 ~~sl~~~~ 324 (327)
T KOG1502|consen 317 VESLREKG 324 (327)
T ss_pred HHHHHHhc
Confidence 99998764
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=295.01 Aligned_cols=298 Identities=20% Similarity=0.235 Sum_probs=217.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc--ccccc-cCCCceEEEeccccccc-----ccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD--NLIHH-FGNPRFELIRHDVVEPI-----LLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~--~~~~~-~~~~~v~~~~~D~~~~~-----~~~~d~Vih 185 (447)
++|+||||||+||||++|+++|+++|++|++++|+...... .+... ....+++++.+|+.++. +.++|+|||
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 46899999999999999999999999999999986432111 11000 01246788999987753 567999999
Q ss_pred eccCCCCCCcccCh-HHHHHHHHHHHHHHHHHHHHC-CC-eEEEEeCcc--ccCCC---CCCCCCCCcCCCCC-CCCCCC
Q 013226 186 LACPASPVHYKFNP-VKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSE--VYGDP---LQHPQAETYWGNVN-PIGVRS 256 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~-~~~~~~Nv~gt~~ll~aa~~~-g~-r~v~~SS~~--v~g~~---~~~~~~e~~~~~~~-~~~~~~ 256 (447)
+|+.... ...++ ...+++|+.|+.+++++|++. ++ |||++||.+ +|+.. ...+++|+.+.... +....+
T Consensus 83 ~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~~ 160 (322)
T PLN02662 83 TASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKL 160 (322)
T ss_pred eCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcccc
Confidence 9986532 12234 378899999999999999887 77 999999986 46532 22356666332110 111236
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHH
Q 013226 257 CYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 257 ~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai 336 (447)
.|+.+|..+|.+++.+.++++++++++||+++|||+.... ......++..++.+... . +.+.++|+||+|+|+++
T Consensus 161 ~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~-~~~~~~~~~~~~~~~~~--~--~~~~~~~i~v~Dva~a~ 235 (322)
T PLN02662 161 WYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPT-LNTSAEAILNLINGAQT--F--PNASYRWVDVRDVANAH 235 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCC-CCchHHHHHHHhcCCcc--C--CCCCcCeEEHHHHHHHH
Confidence 8999999999999999888899999999999999985422 12334455556555432 2 23568999999999999
Q ss_pred HHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHH
Q 013226 337 IRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415 (447)
Q Consensus 337 ~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~ 415 (447)
+.+++++. .|.||++ ++.++++|+++.+.+.++...................+|++|+++ |||++. +++|+|++++
T Consensus 236 ~~~~~~~~~~~~~~~~-g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lg~~~~-~~~~~l~~~~ 312 (322)
T PLN02662 236 IQAFEIPSASGRYCLV-ERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEKAKS-LGIEFI-PLEVSLKDTV 312 (322)
T ss_pred HHHhcCcCcCCcEEEe-CCCCCHHHHHHHHHHHCCCCCCCCCCCCccccccccccChHHHHH-hCCccc-cHHHHHHHHH
Confidence 99998764 4689997 578999999999999876421111111111233456789999995 999974 9999999999
Q ss_pred HHHHHH
Q 013226 416 ADFRHR 421 (447)
Q Consensus 416 ~~~~~~ 421 (447)
+||+++
T Consensus 313 ~~~~~~ 318 (322)
T PLN02662 313 ESLKEK 318 (322)
T ss_pred HHHHHc
Confidence 999865
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=293.21 Aligned_cols=297 Identities=21% Similarity=0.304 Sum_probs=219.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc--ccccc-cCCCceEEEeccccccc-----ccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD--NLIHH-FGNPRFELIRHDVVEPI-----LLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~--~~~~~-~~~~~v~~~~~D~~~~~-----~~~~d~Vih 185 (447)
.+|+|+||||+||||++++++|+++|++|+++.|+...... .+... ....++.++.+|+++.. +.++|+|||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih 83 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH 83 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence 57899999999999999999999999999998886543211 11100 01246888999997763 457999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEeCcccc--CCC---CCCCCCCCcCCCCC-CCCCCCh
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVY--GDP---LQHPQAETYWGNVN-PIGVRSC 257 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g~-r~v~~SS~~v~--g~~---~~~~~~e~~~~~~~-~~~~~~~ 257 (447)
+|+..... ......+.+++|+.|+.+++++|++. ++ |||++||.++| +.+ ...+++|+.|.+.. +..+.+.
T Consensus 84 ~A~~~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~ 162 (322)
T PLN02986 84 TASPVFFT-VKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNW 162 (322)
T ss_pred eCCCcCCC-CCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccccc
Confidence 99964321 12223457899999999999999986 66 99999998754 432 23457787664321 1124578
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~ 337 (447)
|+.||..+|.+++++.++++++++++||+++|||..... ..+...++..++.++.+ ++ .+.++|+||+|+|++++
T Consensus 163 Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~-~~~~~~~~~~~~~g~~~--~~--~~~~~~v~v~Dva~a~~ 237 (322)
T PLN02986 163 YPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPT-LNFSVELIVDFINGKNL--FN--NRFYRFVDVRDVALAHI 237 (322)
T ss_pred hHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCC-CCccHHHHHHHHcCCCC--CC--CcCcceeEHHHHHHHHH
Confidence 999999999999999988899999999999999986432 12234455566666543 33 35679999999999999
Q ss_pred HHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcc--cCChHHHHHHcCCCccCCHHHHHHHH
Q 013226 338 RLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKR--KPDITKAKQLLGWEPRVTLRKGLPLM 414 (447)
Q Consensus 338 ~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~--~~d~~k~~~~lG~~p~~s~~e~l~~~ 414 (447)
.+++++. .+.||++ ++.+++.|+++.+.+.++. ..+... ....+.... .+|++|++. |||+++ +++|+|+++
T Consensus 238 ~al~~~~~~~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~~-~~~~~~~~~~~~~d~~~~~~-lg~~~~-~l~e~~~~~ 312 (322)
T PLN02986 238 KALETPSANGRYIID-GPIMSVNDIIDILRELFPD-LCIADT-NEESEMNEMICKVCVEKVKN-LGVEFT-PMKSSLRDT 312 (322)
T ss_pred HHhcCcccCCcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCCC-CccccccccCCccCHHHHHH-cCCccc-CHHHHHHHH
Confidence 9999764 4699995 5789999999999999863 222111 111222222 379999875 999998 999999999
Q ss_pred HHHHHHH
Q 013226 415 VADFRHR 421 (447)
Q Consensus 415 ~~~~~~~ 421 (447)
++|++..
T Consensus 313 ~~~~~~~ 319 (322)
T PLN02986 313 ILSLKEK 319 (322)
T ss_pred HHHHHHc
Confidence 9998764
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=296.33 Aligned_cols=303 Identities=20% Similarity=0.265 Sum_probs=216.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc----CCCceEEEecccccc-----cccCCCEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF----GNPRFELIRHDVVEP-----ILLEVDQIY 184 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~-----~~~~~d~Vi 184 (447)
..|+||||||+||||++++++|+++|++|++++|+..... .+.... ...++.++.+|+.+. .+.++|+||
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVK-KVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhH-HHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 4568999999999999999999999999999988643221 111110 112578888898765 345799999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCC-CCCC-CCCCcCCCC----CCCCCCC
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDP-LQHP-QAETYWGNV----NPIGVRS 256 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~-~~~~-~~e~~~~~~----~~~~~~~ 256 (447)
|+|+..... ......+.+++|+.|+.+++++|++.+ + ||||+||.++|+.. ...+ ++|+.|... .+..+.+
T Consensus 83 H~A~~~~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 161 (351)
T PLN02650 83 HVATPMDFE-SKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW 161 (351)
T ss_pred EeCCCCCCC-CCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence 999864321 112234688999999999999999987 5 89999999876543 2233 567655321 1222446
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHH
Q 013226 257 CYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 257 ~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a 335 (447)
.|+.||..+|.+++.++++++++++++||+++|||++.... ..++..+ ....+... .++. ...++|+||+|+|++
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~--~~~~~~~~-~~~~-~~~r~~v~V~Dva~a 237 (351)
T PLN02650 162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITAL--SLITGNEA-HYSI-IKQGQFVHLDDLCNA 237 (351)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHH--HHhcCCcc-ccCc-CCCcceeeHHHHHHH
Confidence 89999999999999999889999999999999999864221 1122211 11223222 1222 234799999999999
Q ss_pred HHHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCC-CcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHH
Q 013226 336 LIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRN-ARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPL 413 (447)
Q Consensus 336 i~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~ 413 (447)
++.+++++. .+.| +++++.+++.|+++.|.+.++.. .+.. .+....+......|++|++ +|||+|+++++|+|++
T Consensus 238 ~~~~l~~~~~~~~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~d~~k~~-~lG~~p~~~l~egl~~ 314 (351)
T PLN02650 238 HIFLFEHPAAEGRY-ICSSHDATIHDLAKMLREKYPEYNIPAR-FPGIDEDLKSVEFSSKKLT-DLGFTFKYSLEDMFDG 314 (351)
T ss_pred HHHHhcCcCcCceE-EecCCCcCHHHHHHHHHHhCcccCCCCC-CCCcCcccccccCChHHHH-HhCCCCCCCHHHHHHH
Confidence 999998764 3578 56678899999999999987632 1111 1111223344567888875 6999999999999999
Q ss_pred HHHHHHHHhcCC
Q 013226 414 MVADFRHRIFGD 425 (447)
Q Consensus 414 ~~~~~~~~~~~~ 425 (447)
+++|+++....+
T Consensus 315 ~i~~~~~~~~~~ 326 (351)
T PLN02650 315 AIETCREKGLIP 326 (351)
T ss_pred HHHHHHHcCCCC
Confidence 999998776543
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=284.82 Aligned_cols=271 Identities=25% Similarity=0.314 Sum_probs=214.4
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccC--CCEEEEeccCCCCCC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLE--VDQIYHLACPASPVH 194 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~--~d~Vih~Ag~~~~~~ 194 (447)
+|+||||+||||++++++|+++|++|++++|. ..++.+.+.....+.+ +|+|||+||......
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~---------------~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~ 65 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS---------------QLDLTDPEALERLLRAIRPDAVVNTAAYTDVDG 65 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---------------ccCCCCHHHHHHHHHhCCCCEEEECCccccccc
Confidence 48999999999999999999999999999874 1222222333333443 599999999754333
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 013226 195 YKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR 274 (447)
Q Consensus 195 ~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~ 274 (447)
....+...+++|+.++.+++++|++.+.+||++||.++|+.....+++|+ .+..+.+.|+.+|..+|.+++.+
T Consensus 66 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~Ss~~vy~~~~~~~~~E~-----~~~~~~~~Y~~~K~~~E~~~~~~-- 138 (287)
T TIGR01214 66 AESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFDGEGKRPYRED-----DATNPLNVYGQSKLAGEQAIRAA-- 138 (287)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecCCCCCCCCCC-----CCCCCcchhhHHHHHHHHHHHHh--
Confidence 33456778999999999999999998889999999999987666778887 45566789999999999998774
Q ss_pred hhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC--CCCcEEecC
Q 013226 275 GLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD--HVGPFNLGN 352 (447)
Q Consensus 275 ~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~--~~g~~~i~~ 352 (447)
+++++++||+++|||+. ...++..++..+..++++...++ ..++++|++|+|++++.+++++ ..++||+++
T Consensus 139 --~~~~~ilR~~~v~G~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~Dva~a~~~~~~~~~~~~~~~ni~~ 211 (287)
T TIGR01214 139 --GPNALIVRTSWLYGGGG---GRNFVRTMLRLAGRGEELRVVDD--QIGSPTYAKDLARVIAALLQRLARARGVYHLAN 211 (287)
T ss_pred --CCCeEEEEeeecccCCC---CCCHHHHHHHHhhcCCCceEecC--CCcCCcCHHHHHHHHHHHHhhccCCCCeEEEEC
Confidence 67999999999999973 23566677777777777776654 5689999999999999999875 457999999
Q ss_pred CCccCHHHHHHHHHHHhCCCCcE------Eec-----CCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHH
Q 013226 353 PGEFTMLELAEVVQEIIDRNARI------EFR-----PNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417 (447)
Q Consensus 353 ~~~~s~~el~~~i~~~~g~~~~~------~~~-----~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~ 417 (447)
++.+++.|+++.+.+.+|.+... ... +.....+....+|++|++++|||++ ++++++|.+++++
T Consensus 212 ~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~~~-~~~~~~l~~~~~~ 286 (287)
T TIGR01214 212 SGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGTPL-PHWREALRAYLQE 286 (287)
T ss_pred CCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCCCC-ccHHHHHHHHHhh
Confidence 99999999999999999876431 111 1112233456789999999999955 4999999998864
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=287.91 Aligned_cols=272 Identities=28% Similarity=0.424 Sum_probs=204.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc--cCCCEEEEeccCCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL--LEVDQIYHLACPASPV 193 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~Vih~Ag~~~~~ 193 (447)
|+||||||+|+||++|++.|.++|++|+.+.|. .+++.+.+.....+ ..+|+||||||...+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~ 65 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS---------------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNVD 65 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------CS-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------hcCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence 789999999999999999999999999998763 11222222222222 2589999999998878
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 013226 194 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 273 (447)
Q Consensus 194 ~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~ 273 (447)
.++.+++..+++|+.++.+|+++|.+.|+++||+||..||+.....++.|+ .+..|.+.||.+|+.+|+.+++..
T Consensus 66 ~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~~~~~y~E~-----d~~~P~~~YG~~K~~~E~~v~~~~ 140 (286)
T PF04321_consen 66 ACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGDKGGPYTED-----DPPNPLNVYGRSKLEGEQAVRAAC 140 (286)
T ss_dssp HHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SSTSSSB-TT-----S----SSHHHHHHHHHHHHHHHH-
T ss_pred hhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCCcccccccC-----CCCCCCCHHHHHHHHHHHHHHHhc
Confidence 888899999999999999999999999999999999999987777788888 577788999999999999998743
Q ss_pred hhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC-----CcE
Q 013226 274 RGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV-----GPF 348 (447)
Q Consensus 274 ~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~-----g~~ 348 (447)
. +..|+|++.+||+. ...++..++..+.+++.+.++.+ ...++++++|+|+++..++++... |+|
T Consensus 141 ~----~~~IlR~~~~~g~~----~~~~~~~~~~~~~~~~~i~~~~d--~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giy 210 (286)
T PF04321_consen 141 P----NALILRTSWVYGPS----GRNFLRWLLRRLRQGEPIKLFDD--QYRSPTYVDDLARVILELIEKNLSGASPWGIY 210 (286)
T ss_dssp S----SEEEEEE-SEESSS----SSSHHHHHHHHHHCTSEEEEESS--CEE--EEHHHHHHHHHHHHHHHHH-GGG-EEE
T ss_pred C----CEEEEecceecccC----CCchhhhHHHHHhcCCeeEeeCC--ceeCCEEHHHHHHHHHHHHHhcccccccceeE
Confidence 2 89999999999993 35788888888888898888654 788999999999999999998766 999
Q ss_pred EecCCCccCHHHHHHHHHHHhCCCC-cEEecCCC-----CCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHH
Q 013226 349 NLGNPGEFTMLELAEVVQEIIDRNA-RIEFRPNT-----EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADF 418 (447)
Q Consensus 349 ~i~~~~~~s~~el~~~i~~~~g~~~-~~~~~~~~-----~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~ 418 (447)
|+++++.+|+.|+++.+.+.+|.+. .+...+.. ...+.+..+|++|+++.||+++. +|+++|+++++.|
T Consensus 211 h~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~-~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 211 HLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPP-PWREGLEELVKQY 285 (286)
T ss_dssp E---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS----BHHHHHHHHHHHH
T ss_pred EEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCc-CHHHHHHHHHHHh
Confidence 9999999999999999999999887 44433222 23455678999999999999999 9999999999876
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=275.90 Aligned_cols=302 Identities=26% Similarity=0.393 Sum_probs=251.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc----cCCCceEEEecccccccc-------cCCCEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH----FGNPRFELIRHDVVEPIL-------LEVDQI 183 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~----~~~~~v~~~~~D~~~~~~-------~~~d~V 183 (447)
+++||||||+||||+|.+.+|+++|+.|+++|.......+.+... .....+.+.++|+.|..+ .++|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 578999999999999999999999999999998655443322211 124689999999988753 359999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC-CCChHHHH
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG-VRSCYDEG 261 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~-~~~~Y~~s 261 (447)
+|+|+.......-.++......|+.|+.+|++.++++++ .+|+.||+.+||.+..-|++|+ .+.. |.+.|+.+
T Consensus 82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~-----~~t~~p~~pyg~t 156 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEE-----DPTDQPTNPYGKT 156 (343)
T ss_pred EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCc-----CCCCCCCCcchhh
Confidence 999998776666677888999999999999999999998 9999999999999999999999 5555 78999999
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEeeccccC--CCCccCC------CchHHHHHHHHHh--------CCCeEEecCCCeeEc
Q 013226 262 KRTAETLTMDYHRGLGIEARIARIFNTYG--PRMCIDD------GRVVSNFVAQALR--------KEPLTVYGDGKQTRS 325 (447)
Q Consensus 262 K~~~E~~~~~~~~~~~i~~~ivRp~~i~G--p~~~~~~------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 325 (447)
|...|.++.++....++.++.+|.++++| |.....+ .+.++....-++. +.+... .+++..++
T Consensus 157 K~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t-~dgt~vrd 235 (343)
T KOG1371|consen 157 KKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTT-IDGTIVRD 235 (343)
T ss_pred hHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccc-cCCCeeec
Confidence 99999999999988889999999999999 5433221 1222211111111 222332 34578899
Q ss_pred cccHHHHHHHHHHHHcCCCC----CcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCC
Q 013226 326 FQFVSDLVEGLIRLMEGDHV----GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGW 401 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~~----g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~ 401 (447)
++|+-|+|+.++.++++... ++||++++...++.||+.++++..|.+.++...+...++......+.+++.++|||
T Consensus 236 yi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~~ya~~~~a~~elgw 315 (343)
T KOG1371|consen 236 YIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAFVYANPSKAQRELGW 315 (343)
T ss_pred ceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCCCCCCceeeeeChHHHHHHhCC
Confidence 99999999999999987543 69999999999999999999999999999998888888888889999999999999
Q ss_pred CccCCHHHHHHHHHHHHHHHh
Q 013226 402 EPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 402 ~p~~s~~e~l~~~~~~~~~~~ 422 (447)
++.+.++|+++++++|..++-
T Consensus 316 k~~~~iee~c~dlw~W~~~np 336 (343)
T KOG1371|consen 316 KAKYGLQEMLKDLWRWQKQNP 336 (343)
T ss_pred ccccCHHHHHHHHHHHHhcCC
Confidence 999999999999999998764
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=280.55 Aligned_cols=290 Identities=26% Similarity=0.350 Sum_probs=219.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 190 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~~ 190 (447)
|+|+||||+||||+++++.|+++|++|++++|+..... .+ ....++++.+|+.+. .+.++|+|||+|+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~----~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRR-NL----EGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccc-cc----ccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 57999999999999999999999999999999643321 11 123577888888764 355799999999853
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCC-CCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGD-PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~-~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
. .+..++.+.+++|+.++.++++++++.++ +||++||.++|+. ....+.+|+... .+....+.|+.+|..+|++
T Consensus 76 ~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~--~~~~~~~~Y~~sK~~~e~~ 151 (328)
T TIGR03466 76 R--LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPS--SLDDMIGHYKRSKFLAEQA 151 (328)
T ss_pred c--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCC--CcccccChHHHHHHHHHHH
Confidence 2 23445778899999999999999999887 9999999999985 334566776321 1222246899999999999
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCC-c
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG-P 347 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g-~ 347 (447)
++++..+.+++++++||+++|||+.... .....++.....+.. +.+.+ ...+|+|++|+|++++.+++++..| .
T Consensus 152 ~~~~~~~~~~~~~ilR~~~~~G~~~~~~--~~~~~~~~~~~~~~~-~~~~~--~~~~~i~v~D~a~a~~~~~~~~~~~~~ 226 (328)
T TIGR03466 152 ALEMAAEKGLPVVIVNPSTPIGPRDIKP--TPTGRIIVDFLNGKM-PAYVD--TGLNLVHVDDVAEGHLLALERGRIGER 226 (328)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCCCCCC--CcHHHHHHHHHcCCC-ceeeC--CCcceEEHHHHHHHHHHHHhCCCCCce
Confidence 9999888899999999999999975321 122334444444432 22222 3368999999999999999887665 5
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCcEEecCCC----------------CCCC-----------CcccCChHHHHHHcC
Q 013226 348 FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT----------------EDDP-----------HKRKPDITKAKQLLG 400 (447)
Q Consensus 348 ~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~----------------~~~~-----------~~~~~d~~k~~~~lG 400 (447)
|++ +++.+++.|+++.+.+.+|.+......|.. ...+ ....+|++|++++||
T Consensus 227 ~~~-~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 305 (328)
T TIGR03466 227 YIL-GGENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELG 305 (328)
T ss_pred EEe-cCCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCChHHHHHHcC
Confidence 665 578999999999999999976544332211 0111 245679999999999
Q ss_pred CCccCCHHHHHHHHHHHHHHH
Q 013226 401 WEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 401 ~~p~~s~~e~l~~~~~~~~~~ 421 (447)
|+|. +++++|+++++||+++
T Consensus 306 ~~p~-~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 306 YRQR-PAREALRDAVEWFRAN 325 (328)
T ss_pred CCCc-CHHHHHHHHHHHHHHh
Confidence 9997 9999999999999875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=283.18 Aligned_cols=278 Identities=19% Similarity=0.249 Sum_probs=215.9
Q ss_pred CCCeEEEE----cCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc------cccCCCceEEEeccccc--ccc--cC
Q 013226 114 KSLRILVT----GGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI------HHFGNPRFELIRHDVVE--PIL--LE 179 (447)
Q Consensus 114 ~~~~ilVt----GasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~------~~~~~~~v~~~~~D~~~--~~~--~~ 179 (447)
..++|||| |||||||++|+++|+++|++|++++|.......... ..+...++.++.+|+.+ ..+ .+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~ 130 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAG 130 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCC
Confidence 45789999 999999999999999999999999997543111000 01112347888888865 222 46
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChH
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCY 258 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y 258 (447)
+|+|||+++. +..++.+++++|++.|+ +|||+||.++|+.....+..|+ .+..+.+
T Consensus 131 ~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~-----~~~~p~~-- 187 (378)
T PLN00016 131 FDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEG-----DAVKPKA-- 187 (378)
T ss_pred ccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCC-----CcCCCcc--
Confidence 9999999752 24578899999999998 9999999999997665566666 2333322
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHH
Q 013226 259 DEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~ 338 (447)
+|..+|.++++ .+++++++||+++|||+.. ..+...++..+..++++.+++++.+.++|+|++|+|++++.
T Consensus 188 --sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~---~~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~ 258 (378)
T PLN00016 188 --GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNN---KDCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFAL 258 (378)
T ss_pred --hHHHHHHHHHH----cCCCeEEEeceeEECCCCC---CchHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHH
Confidence 89999987653 5899999999999999742 23455667777888888888888899999999999999999
Q ss_pred HHcCCC--CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC----------CCCCcccCChHHHHHHcCCCccCC
Q 013226 339 LMEGDH--VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE----------DDPHKRKPDITKAKQLLGWEPRVT 406 (447)
Q Consensus 339 ~l~~~~--~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~----------~~~~~~~~d~~k~~~~lG~~p~~s 406 (447)
+++++. .++||+++++.+|+.|+++.+.+.+|.+..+...+... ........|++|++++|||+|+++
T Consensus 259 ~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~~~LGw~p~~~ 338 (378)
T PLN00016 259 VVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAKEELGWTPKFD 338 (378)
T ss_pred HhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCHHHHHHhcCCCCCCC
Confidence 998753 36999999999999999999999999877554322111 012234569999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 013226 407 LRKGLPLMVADFRHRIF 423 (447)
Q Consensus 407 ~~e~l~~~~~~~~~~~~ 423 (447)
++|+|+++++||+.+-.
T Consensus 339 l~egl~~~~~~~~~~~~ 355 (378)
T PLN00016 339 LVEDLKDRYELYFGRGR 355 (378)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999986653
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=277.56 Aligned_cols=268 Identities=21% Similarity=0.246 Sum_probs=208.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCccccccccCCCceEEEeccccccc-----ccCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LLEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~~~d~Vih~ 186 (447)
++|+||||||+||||++++++|+++| ++|++++|+.... ..+.......++.++.+|+.+.. +.++|+|||+
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~-~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQ-WEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHH-HHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 67899999999999999999999987 7899998864321 11111222246888999998763 4579999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTA 265 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~ 265 (447)
||.........++.+.+++|+.|+.+++++|++.++ +||++||... ..|.+.|+.+|+++
T Consensus 82 Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~-------------------~~p~~~Y~~sK~~~ 142 (324)
T TIGR03589 82 AALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA-------------------ANPINLYGATKLAS 142 (324)
T ss_pred cccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC-------------------CCCCCHHHHHHHHH
Confidence 997543333456778999999999999999999987 9999999632 22347799999999
Q ss_pred HHHHHHHH---hhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCC-CeEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 266 ETLTMDYH---RGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKE-PLTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 266 E~~~~~~~---~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
|.+++.++ ...|++++++|||++|||+. .++..+......+. +++++ ++.+.++|+|++|++++++.+++
T Consensus 143 E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~-----~~i~~~~~~~~~~~~~~~i~-~~~~~r~~i~v~D~a~a~~~al~ 216 (324)
T TIGR03589 143 DKLFVAANNISGSKGTRFSVVRYGNVVGSRG-----SVVPFFKSLKEEGVTELPIT-DPRMTRFWITLEQGVNFVLKSLE 216 (324)
T ss_pred HHHHHHHHhhccccCcEEEEEeecceeCCCC-----CcHHHHHHHHHhCCCCeeeC-CCCceEeeEEHHHHHHHHHHHHh
Confidence 99998764 35699999999999999863 46677776666665 56654 66788999999999999999998
Q ss_pred CCCCC-cEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCC-CcccCChHHHHHHcCCCccCCHHHHHH
Q 013226 342 GDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDP-HKRKPDITKAKQLLGWEPRVTLRKGLP 412 (447)
Q Consensus 342 ~~~~g-~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~-~~~~~d~~k~~~~lG~~p~~s~~e~l~ 412 (447)
+...+ +| ++++..+++.|+++.+.+.. .+.+.+....+. ....+|.+|++++|||+|++++++++.
T Consensus 217 ~~~~~~~~-~~~~~~~sv~el~~~i~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~l~~~~~ 284 (324)
T TIGR03589 217 RMLGGEIF-VPKIPSMKITDLAEAMAPEC----PHKIVGIRPGEKLHEVMITEDDARHTYELGDYYAILPSIS 284 (324)
T ss_pred hCCCCCEE-ccCCCcEEHHHHHHHHHhhC----CeeEeCCCCCchhHhhhcChhhhhhhcCCCCeEEEccccc
Confidence 75444 55 56667799999999999864 333444444443 445689999999999999999999875
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=260.64 Aligned_cols=270 Identities=23% Similarity=0.310 Sum_probs=231.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccccc--CCCEEEEeccCCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL--EVDQIYHLACPASPV 193 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~Ag~~~~~ 193 (447)
|+|||||++|++|.+|++.|. .+++|+.++|. .+|+.+.|...+.+. .+|+|||+|+.....
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~---------------~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD 64 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRA---------------ELDITDPDAVLEVIRETRPDVVINAAAYTAVD 64 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCc---------------cccccChHHHHHHHHhhCCCEEEECccccccc
Confidence 459999999999999999988 67899998873 245555554444443 589999999999888
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 013226 194 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 273 (447)
Q Consensus 194 ~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~ 273 (447)
..+.+++..+.+|..|+.++.++|++.|+++||+||.+||......++.|+ ++..|.+.||+||+++|..++++
T Consensus 65 ~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~-----D~~~P~nvYG~sKl~GE~~v~~~- 138 (281)
T COG1091 65 KAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKET-----DTPNPLNVYGRSKLAGEEAVRAA- 138 (281)
T ss_pred cccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCC-----CCCCChhhhhHHHHHHHHHHHHh-
Confidence 888899999999999999999999999999999999999988888889999 67888899999999999999875
Q ss_pred hhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC-CcEEecC
Q 013226 274 RGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV-GPFNLGN 352 (447)
Q Consensus 274 ~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~-g~~~i~~ 352 (447)
+-+..|+|.+++||... .+|+..++.....++.+.+.. ++..+++++.|+|+++..++..... |+||+++
T Consensus 139 ---~~~~~I~Rtswv~g~~g----~nFv~tml~la~~~~~l~vv~--Dq~gsPt~~~dlA~~i~~ll~~~~~~~~yH~~~ 209 (281)
T COG1091 139 ---GPRHLILRTSWVYGEYG----NNFVKTMLRLAKEGKELKVVD--DQYGSPTYTEDLADAILELLEKEKEGGVYHLVN 209 (281)
T ss_pred ---CCCEEEEEeeeeecCCC----CCHHHHHHHHhhcCCceEEEC--CeeeCCccHHHHHHHHHHHHhccccCcEEEEeC
Confidence 45799999999999853 678888888888888888765 4888999999999999999998765 5999999
Q ss_pred CCccCHHHHHHHHHHHhCCCCcEE-e-----cCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHH
Q 013226 353 PGEFTMLELAEVVQEIIDRNARIE-F-----RPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417 (447)
Q Consensus 353 ~~~~s~~el~~~i~~~~g~~~~~~-~-----~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~ 417 (447)
.+.+||.|+++.|.+.++.+..+. . .|.....+....+|+.|+.+.+|+.+. +|++.++++++.
T Consensus 210 ~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~-~w~~~l~~~~~~ 279 (281)
T COG1091 210 SGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP-EWREALKALLDE 279 (281)
T ss_pred CCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCc-cHHHHHHHHHhh
Confidence 999999999999999998655332 1 244455667788999999999999999 999999999875
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=272.42 Aligned_cols=247 Identities=27% Similarity=0.337 Sum_probs=191.8
Q ss_pred EEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccCCC
Q 013226 119 LVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACPAS 191 (447)
Q Consensus 119 lVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~~~ 191 (447)
|||||+||||++|+++|+++| ++|+++++......... .......+++.+|++++ ++.++|+|||+|++..
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~--~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKD--LQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchh--hhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 699999999999999999999 79999998654433111 11122334888888775 5789999999999754
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCC-CCCCCC---CCCcCCCCCCCCCCChHHHHHHHHH
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGD-PLQHPQ---AETYWGNVNPIGVRSCYDEGKRTAE 266 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~-~~~~~~---~e~~~~~~~~~~~~~~Y~~sK~~~E 266 (447)
... ....++++++|+.||++|+++|++.++ ||||+||.++++. ....++ +|+.+ .+..+.+.|+.||+.+|
T Consensus 79 ~~~-~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~---~~~~~~~~Y~~SK~~AE 154 (280)
T PF01073_consen 79 PWG-DYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTP---YPSSPLDPYAESKALAE 154 (280)
T ss_pred ccC-cccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCc---ccccccCchHHHHHHHH
Confidence 322 345778999999999999999999998 9999999998875 222232 34422 22335689999999999
Q ss_pred HHHHHHHh---h--hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 267 TLTMDYHR---G--LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 267 ~~~~~~~~---~--~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
+++++... + ..+.+++|||+.||||++ ..+...+......+......+++....+++||+|+|.+++.+++
T Consensus 155 ~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d----~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~ 230 (280)
T PF01073_consen 155 KAVLEANGSELKNGGRLRTCALRPAGIYGPGD----QRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQ 230 (280)
T ss_pred HHHHhhcccccccccceeEEEEeccEEeCccc----ccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHH
Confidence 99999765 2 259999999999999975 33445556556666566777888888999999999999998765
Q ss_pred C---C------CCCcEEecCCCccC-HHHHHHHHHHHhCCCCcE
Q 013226 342 G---D------HVGPFNLGNPGEFT-MLELAEVVQEIIDRNARI 375 (447)
Q Consensus 342 ~---~------~~g~~~i~~~~~~s-~~el~~~i~~~~g~~~~~ 375 (447)
. + ....|+|++++++. ++|+...+.+.+|.+.+.
T Consensus 231 ~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 231 ALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred HhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 2 2 22499999999999 999999999999987654
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=282.46 Aligned_cols=289 Identities=18% Similarity=0.198 Sum_probs=215.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-------CCCceEEEeccccccc-----cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-------GNPRFELIRHDVVEPI-----LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-------~~~~v~~~~~D~~~~~-----~~ 178 (447)
...++|+||||||+||||++++++|+++|++|+++.|+.... +.+.... ....+.++.+|+++.. +.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~-~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDK-EKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 345789999999999999999999999999999988753221 1111100 0124778889998763 55
Q ss_pred CCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEeCcc--ccCCC--CC--CCCCCCcCCCC-
Q 013226 179 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSE--VYGDP--LQ--HPQAETYWGNV- 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g~-r~v~~SS~~--v~g~~--~~--~~~~e~~~~~~- 249 (447)
++|.|||+|+...+...........++|+.++.+++++|++. ++ ||||+||.. +||.. .. ..++|+.|...
T Consensus 128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~ 207 (367)
T PLN02686 128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDES 207 (367)
T ss_pred hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChh
Confidence 799999999876443322222456789999999999999986 67 999999964 77642 22 34677765432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
.+..+.+.|+.||..+|.+++.++++.+++++++||++||||+...... . .+...+.+. +.+++++ .++|+||
T Consensus 208 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~---~-~~~~~~~g~-~~~~g~g--~~~~v~V 280 (367)
T PLN02686 208 FCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNS---T-ATIAYLKGA-QEMLADG--LLATADV 280 (367)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCC---h-hHHHHhcCC-CccCCCC--CcCeEEH
Confidence 3444567899999999999999988889999999999999998532111 1 122344443 5556654 3579999
Q ss_pred HHHHHHHHHHHcCC---C-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCC-CCCCCcccCChHHHHHHcCCCcc
Q 013226 330 SDLVEGLIRLMEGD---H-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT-EDDPHKRKPDITKAKQLLGWEPR 404 (447)
Q Consensus 330 ~D~a~ai~~~l~~~---~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lG~~p~ 404 (447)
+|+|++++.+++.. . .+.| +++++.+++.|+++.|.+.+|.+..+...+.. ..++.....|++|++++|||+|+
T Consensus 281 ~Dva~A~~~al~~~~~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~d~~kl~~~l~~~~~ 359 (367)
T PLN02686 281 ERLAEAHVCVYEAMGNKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFELSNKKLSRLMSRTRR 359 (367)
T ss_pred HHHHHHHHHHHhccCCCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccccHHHHHHHHHHhhh
Confidence 99999999999842 2 3477 88889999999999999999987666555544 56778888999999999999998
Q ss_pred CCHH
Q 013226 405 VTLR 408 (447)
Q Consensus 405 ~s~~ 408 (447)
-.++
T Consensus 360 ~~~~ 363 (367)
T PLN02686 360 CCYD 363 (367)
T ss_pred cccc
Confidence 5444
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=263.82 Aligned_cols=304 Identities=23% Similarity=0.276 Sum_probs=236.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCc-cccccccCCCceEEEecccccc-----cccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKK-DNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih 185 (447)
++.+++||||+||+|++|+++|++++ .+|+++|..+.... ...........+.++.+|+.+. ++.++ .|+|
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh 81 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVVH 81 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-eEEE
Confidence 56689999999999999999999998 69999998654211 1111111256788898998765 56678 8888
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCC-CCCCCCcCCCCCCCCCCChHHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ-HPQAETYWGNVNPIGVRSCYDEGKR 263 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~-~~~~e~~~~~~~~~~~~~~Y~~sK~ 263 (447)
||+...+.....+++.++++|+.||.+++++|++.++ ++||+||.+|...... ...+|+.. .|....+.|+.||+
T Consensus 82 ~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p---~p~~~~d~Y~~sKa 158 (361)
T KOG1430|consen 82 CAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLP---YPLKHIDPYGESKA 158 (361)
T ss_pred eccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCC---CccccccccchHHH
Confidence 8887666666667889999999999999999999999 9999999996644333 22334421 22344478999999
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcC-
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG- 342 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~- 342 (447)
.+|.++.+.+...++.++++||..||||++ ..++..++..+..+..+...++++...+++++++|+.+++.+...
T Consensus 159 ~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd----~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL 234 (361)
T KOG1430|consen 159 LAEKLVLEANGSDDLYTCALRPPGIYGPGD----KRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARAL 234 (361)
T ss_pred HHHHHHHHhcCCCCeeEEEEccccccCCCC----ccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHH
Confidence 999999998776789999999999999985 566778888888888888888888889999999999999976532
Q ss_pred ---C--CC-CcEEecCCCccCHHHHHHHHHHHhCCCCc-EEecCCCC-----------------CCC-----------Cc
Q 013226 343 ---D--HV-GPFNLGNPGEFTMLELAEVVQEIIDRNAR-IEFRPNTE-----------------DDP-----------HK 387 (447)
Q Consensus 343 ---~--~~-g~~~i~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~-----------------~~~-----------~~ 387 (447)
. .. ..|+|.++.++...++...+.+.+|...+ ....|... ..+ ..
T Consensus 235 ~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~~v~~~~~~ 314 (361)
T KOG1430|consen 235 LDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRFRVALLGVT 314 (361)
T ss_pred HhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChhheeeeccc
Confidence 1 12 39999999999888888899999998877 22222210 010 13
Q ss_pred ccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHhcCC
Q 013226 388 RKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFGD 425 (447)
Q Consensus 388 ~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~~~~ 425 (447)
..++++|++++|||+|.++++|++.+++.|+......+
T Consensus 315 ~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~~ 352 (361)
T KOG1430|consen 315 RTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDSA 352 (361)
T ss_pred cccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhcc
Confidence 35699999999999999999999999999887766543
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-32 Score=236.58 Aligned_cols=296 Identities=23% Similarity=0.289 Sum_probs=243.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccccccccCCCceEEEecccccccc--cCCCEEEEeccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL--LEVDQIYHLACPA 190 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~Vih~Ag~~ 190 (447)
+|+|||||++|.+|++|++.+.++|. +-.++. +....|+.....++..+ .++..|||+|+..
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~--------------~skd~DLt~~a~t~~lF~~ekPthVIhlAAmV 66 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFI--------------GSKDADLTNLADTRALFESEKPTHVIHLAAMV 66 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEe--------------ccccccccchHHHHHHHhccCCceeeehHhhh
Confidence 37899999999999999999999875 211211 11123333333333333 4589999999865
Q ss_pred CCCCc-ccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 191 SPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 191 ~~~~~-~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
..-.- ...+.++++.|+....|++..|-++|+ ++|++-|.++|.+....|++|++.++..|....-.|+.+|.++.-.
T Consensus 67 GGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~idv~ 146 (315)
T KOG1431|consen 67 GGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRMIDVQ 146 (315)
T ss_pred cchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHHHHHHHH
Confidence 42221 224678999999999999999999998 9999999999999999999999987777766667899999999988
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCC--CchHHHHHHHHHh----C-CCeEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALR----K-EPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
.+.|+.++|..++.+-|.++|||.++.+. +.+++.++.+... + ..+.+||+|...++|+|++|+|++++++++
T Consensus 147 n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr 226 (315)
T KOG1431|consen 147 NQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLR 226 (315)
T ss_pred HHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHH
Confidence 89999999999999999999999988553 5567777766443 3 368999999999999999999999999999
Q ss_pred CCCC-CcEEecCCC--ccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCC-HHHHHHHHHHH
Q 013226 342 GDHV-GPFNLGNPG--EFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVT-LRKGLPLMVAD 417 (447)
Q Consensus 342 ~~~~-g~~~i~~~~--~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s-~~e~l~~~~~~ 417 (447)
+-.. ...++..++ .+|++|+++++.++++...++.+.....+.......|++|++. |+|.++++ ++++|.++++|
T Consensus 227 ~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasnsKL~s-l~pd~~ft~l~~ai~~t~~W 305 (315)
T KOG1431|consen 227 EYEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASNSKLRS-LLPDFKFTPLEQAISETVQW 305 (315)
T ss_pred hhcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccchHHHHH-hCCCcccChHHHHHHHHHHH
Confidence 7544 688888877 8999999999999999999999877777777788899999998 89999986 99999999999
Q ss_pred HHHHhcCC
Q 013226 418 FRHRIFGD 425 (447)
Q Consensus 418 ~~~~~~~~ 425 (447)
|..+....
T Consensus 306 y~~Ny~qa 313 (315)
T KOG1431|consen 306 YLDNYEQA 313 (315)
T ss_pred HHHhHHhh
Confidence 99887543
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=252.29 Aligned_cols=225 Identities=35% Similarity=0.567 Sum_probs=190.5
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----cc--CCCEEEEeccCC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYHLACPA 190 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~Ag~~ 190 (447)
||||||+||||++++++|+++|++|+.+.|+.......... .++.+...|+.+.. +. ++|+|||+|+..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~ 76 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK----LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFS 76 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH----TTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc----ceEEEEEeeccccccccccccccCceEEEEeeccc
Confidence 79999999999999999999999999988864433211111 16788888887653 22 469999999864
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHH
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLT 269 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~ 269 (447)
............++.|+.++.+++++|++.++ +||++||..+|+.....+++|+ .+..+.+.|+.+|..+|+++
T Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~-----~~~~~~~~Y~~~K~~~e~~~ 151 (236)
T PF01370_consen 77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDED-----SPINPLSPYGASKRAAEELL 151 (236)
T ss_dssp SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETT-----SGCCHSSHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccc
Confidence 32122256778899999999999999999998 9999999999999877788888 45577788999999999999
Q ss_pred HHHHhhhCCcEEEEeeccccCCC-CccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC--CC
Q 013226 270 MDYHRGLGIEARIARIFNTYGPR-MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH--VG 346 (447)
Q Consensus 270 ~~~~~~~~i~~~ivRp~~i~Gp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~--~g 346 (447)
+.+.++++++++++||+++|||. .......++..++..+..++++.+++++++.++|+|++|+|++++.+++++. .+
T Consensus 152 ~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 231 (236)
T PF01370_consen 152 RDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKAAGG 231 (236)
T ss_dssp HHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCTTTE
T ss_pred cccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCCCCC
Confidence 99998889999999999999999 2234577889999999999999999999999999999999999999999887 57
Q ss_pred cEEec
Q 013226 347 PFNLG 351 (447)
Q Consensus 347 ~~~i~ 351 (447)
+|||+
T Consensus 232 ~yNig 236 (236)
T PF01370_consen 232 IYNIG 236 (236)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 99985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=252.76 Aligned_cols=272 Identities=18% Similarity=0.229 Sum_probs=198.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPV 193 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~ 193 (447)
..|+||||||+||||++|+++|+++|++|+...++.. +.+.+..|+.+ .++|+|||+||.....
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~-------------~~~~v~~~l~~---~~~D~ViH~Aa~~~~~ 71 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLE-------------NRASLEADIDA---VKPTHVFNAAGVTGRP 71 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccC-------------CHHHHHHHHHh---cCCCEEEECCcccCCC
Confidence 5578999999999999999999999999976432111 01111222221 2689999999986532
Q ss_pred ---CcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCC------CCCCCCcCCCCCCCCCCChHHHHHHH
Q 013226 194 ---HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ------HPQAETYWGNVNPIGVRSCYDEGKRT 264 (447)
Q Consensus 194 ---~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~------~~~~e~~~~~~~~~~~~~~Y~~sK~~ 264 (447)
.+..++.+.+++|+.|+.+|+++|++.+++++++||.++|+.... .+++|++ .+..+.+.|+.+|.+
T Consensus 72 ~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~----~p~~~~s~Yg~sK~~ 147 (298)
T PLN02778 72 NVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEED----TPNFTGSFYSKTKAM 147 (298)
T ss_pred CchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCC----CCCCCCCchHHHHHH
Confidence 244578889999999999999999999998888898888875322 2356653 233345789999999
Q ss_pred HHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC
Q 013226 265 AETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 265 ~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~ 344 (447)
+|.++..+. +..++|+...+|++.. ....|+..++.++.+...+ .+++|++|++++++.+++++.
T Consensus 148 ~E~~~~~y~-----~~~~lr~~~~~~~~~~-----~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~al~~~l~~~~ 212 (298)
T PLN02778 148 VEELLKNYE-----NVCTLRVRMPISSDLS-----NPRNFITKITRYEKVVNIP-----NSMTILDELLPISIEMAKRNL 212 (298)
T ss_pred HHHHHHHhh-----ccEEeeecccCCcccc-----cHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHHHHHHHhCCC
Confidence 999998875 3567888777776421 2245677788777655433 269999999999999998766
Q ss_pred CCcEEecCCCccCHHHHHHHHHHHhCCCCc---EEecCCCC---CCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHH
Q 013226 345 VGPFNLGNPGEFTMLELAEVVQEIIDRNAR---IEFRPNTE---DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADF 418 (447)
Q Consensus 345 ~g~~~i~~~~~~s~~el~~~i~~~~g~~~~---~~~~~~~~---~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~ 418 (447)
.|+||+++++.+|+.|+++.+.+.++.+.. +...+... .+..+..+|++|+++.++=.+. ..+++++..++-+
T Consensus 213 ~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~~~~~-~~~~~~~~~~~~~ 291 (298)
T PLN02778 213 TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFPELLP-IKESLIKYVFEPN 291 (298)
T ss_pred CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHHHHHhcccccc-hHHHHHHHHHHHH
Confidence 689999999999999999999999997532 11111100 0111236899999998775455 6788888888877
Q ss_pred HHH
Q 013226 419 RHR 421 (447)
Q Consensus 419 ~~~ 421 (447)
+..
T Consensus 292 ~~~ 294 (298)
T PLN02778 292 KKT 294 (298)
T ss_pred Hhh
Confidence 544
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.4e-31 Score=252.65 Aligned_cols=275 Identities=19% Similarity=0.197 Sum_probs=195.4
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCC-CCcc
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASP-VHYK 196 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~-~~~~ 196 (447)
||||||+||||+++++.|+++|++|++++|+......... ..+.....+.....+.++|+|||+||.... ..+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~~~~~ 75 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW-----EGYKPWAPLAESEALEGADAVINLAGEPIADKRWT 75 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc-----eeeecccccchhhhcCCCCEEEECCCCCcccccCC
Confidence 6899999999999999999999999999997554322110 112212223334456789999999996432 1122
Q ss_pred -cChHHHHHHHHHHHHHHHHHHHHCCC---eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 013226 197 -FNPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDY 272 (447)
Q Consensus 197 -~~~~~~~~~Nv~gt~~ll~aa~~~g~---r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~ 272 (447)
..+...+++|+.++.+++++|+++++ +||++||..+||.....+++|+. +..+.+.|+..+...|..+..+
T Consensus 76 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~-----~~~~~~~~~~~~~~~e~~~~~~ 150 (292)
T TIGR01777 76 EERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEED-----SPAGDDFLAELCRDWEEAAQAA 150 (292)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCccc-----CCCCCChHHHHHHHHHHHhhhc
Confidence 23456889999999999999999985 46666777789876666777773 3334455666776777766544
Q ss_pred HhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC-CCCcEEec
Q 013226 273 HRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD-HVGPFNLG 351 (447)
Q Consensus 273 ~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~-~~g~~~i~ 351 (447)
++.+++++++||+++|||... .+..+......... ..+++++..++|+|++|+|+++..+++++ ..|+||++
T Consensus 151 -~~~~~~~~ilR~~~v~G~~~~-----~~~~~~~~~~~~~~-~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~~~g~~~~~ 223 (292)
T TIGR01777 151 -EDLGTRVVLLRTGIVLGPKGG-----ALAKMLPPFRLGLG-GPLGSGRQWFSWIHIEDLVQLILFALENASISGPVNAT 223 (292)
T ss_pred -hhcCCceEEEeeeeEECCCcc-----hhHHHHHHHhcCcc-cccCCCCcccccEeHHHHHHHHHHHhcCcccCCceEec
Confidence 346899999999999999631 22333322211111 12467788899999999999999999874 45799999
Q ss_pred CCCccCHHHHHHHHHHHhCCCCcEEecCCCCC----------CCCcccCChHHHHHHcCCCccC-CHHHHH
Q 013226 352 NPGEFTMLELAEVVQEIIDRNARIEFRPNTED----------DPHKRKPDITKAKQLLGWEPRV-TLRKGL 411 (447)
Q Consensus 352 ~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~----------~~~~~~~d~~k~~~~lG~~p~~-s~~e~l 411 (447)
+++++|+.|+++.+.+.+|.+..+. .|.... .......+++|+++ +||+|.+ +++|++
T Consensus 224 ~~~~~s~~di~~~i~~~~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 224 APEPVRNKEFAKALARALHRPAFFP-VPAFVLRALLGEMADLLLKGQRVLPEKLLE-AGFQFQYPDLDEAL 292 (292)
T ss_pred CCCccCHHHHHHHHHHHhCCCCcCc-CCHHHHHHHhchhhHHHhCCcccccHHHHh-cCCeeeCcChhhcC
Confidence 9999999999999999999764332 222110 11245578899886 9999999 588864
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=227.47 Aligned_cols=304 Identities=26% Similarity=0.313 Sum_probs=241.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc-----ccCCCceEEEeccccccc-------ccCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH-----HFGNPRFELIRHDVVEPI-------LLEVD 181 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~-----~~~~~~v~~~~~D~~~~~-------~~~~d 181 (447)
++|+.||||-||+-|.+|++.|++.||+|.++.|+.........+ .....++.+..+|++|.. ..++|
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd 80 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD 80 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence 367899999999999999999999999999999875443333211 223456889999999873 24699
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChH
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCY 258 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y 258 (447)
-|+|+|+.+......+.|....+++-.||.+|+++.+-.+ +||.+.||+..||.....|++|+ +|+.|.++|
T Consensus 81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~-----TPFyPrSPY 155 (345)
T COG1089 81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPY 155 (345)
T ss_pred hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccC-----CCCCCCCHH
Confidence 9999999988777777788889999999999999998865 39999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC-CCchHHHHHHHHHhCCCeE-EecCCCeeEccccHHHHHHHH
Q 013226 259 DEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLT-VYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~D~a~ai 336 (447)
+.+|..+--+...|.+.+|+-.+.=...|--+|..+.. -.+-+..-+..+..|..-. ..|+-+..+||-|..|.++++
T Consensus 156 AvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~m 235 (345)
T COG1089 156 AVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAM 235 (345)
T ss_pred HHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHHH
Confidence 99999999999999999998777655555555543211 1222444455555565433 358888999999999999999
Q ss_pred HHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEE------------------ecCCCCCCCC---cccCChHHH
Q 013226 337 IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIE------------------FRPNTEDDPH---KRKPDITKA 395 (447)
Q Consensus 337 ~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~------------------~~~~~~~~~~---~~~~d~~k~ 395 (447)
..+++++....|.+++++..|++|+++...+..|.+.... ........|. -..-|.+|+
T Consensus 236 wlmLQq~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV~~Llgdp~KA 315 (345)
T COG1089 236 WLMLQQEEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLLGDPTKA 315 (345)
T ss_pred HHHHccCCCCceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchhhhhhcCCHHHH
Confidence 9999999999999999999999999999999999654431 0111111111 224489999
Q ss_pred HHHcCCCccCCHHHHHHHHHHHHHHHh
Q 013226 396 KQLLGWEPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 396 ~~~lG~~p~~s~~e~l~~~~~~~~~~~ 422 (447)
+++|||+|+++++|-++.|++.-.+..
T Consensus 316 ~~~LGW~~~~~~~elv~~Mv~~dl~~~ 342 (345)
T COG1089 316 KEKLGWRPEVSLEELVREMVEADLEAA 342 (345)
T ss_pred HHHcCCccccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999877654
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=243.45 Aligned_cols=274 Identities=18% Similarity=0.138 Sum_probs=191.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc-ccccccc--CCCceEEEecccccc-----cccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK-DNLIHHF--GNPRFELIRHDVVEP-----ILLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~-~~~~~~~--~~~~v~~~~~D~~~~-----~~~~~d~Vih 185 (447)
.+++|+||||+||||++++++|+++|++|+++.|+..... ......+ ...++.++.+|+++. .+.++|.|+|
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~ 84 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFC 84 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 4678999999999999999999999999999988532211 0001111 123578888998775 4568999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEeCcccc--CCC---CCCCCCCCcCCCCCC-CCCCCh
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVY--GDP---LQHPQAETYWGNVNP-IGVRSC 257 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g~-r~v~~SS~~v~--g~~---~~~~~~e~~~~~~~~-~~~~~~ 257 (447)
.++..... .....+.+++|+.|+.+++++|.+. ++ |||++||.+++ +.. ...+++|+.|.+... ..+...
T Consensus 85 ~~~~~~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 162 (297)
T PLN02583 85 CFDPPSDY--PSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLW 162 (297)
T ss_pred eCccCCcc--cccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccH
Confidence 88643221 2235678999999999999999886 45 99999998754 311 233677876643211 112237
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~ 337 (447)
|+.||..+|++++++.++.+++++++||++||||+.... . ..+.+. ...+++ ..++||||+|+|++++
T Consensus 163 Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~-----~----~~~~~~-~~~~~~--~~~~~v~V~Dva~a~~ 230 (297)
T PLN02583 163 HALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQH-----N----PYLKGA-AQMYEN--GVLVTVDVNFLVDAHI 230 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCc-----h----hhhcCC-cccCcc--cCcceEEHHHHHHHHH
Confidence 999999999999999888899999999999999975311 0 122222 222222 3467999999999999
Q ss_pred HHHcCCCC-CcEEecCCCccCHHHHHHHHHHHhCCCCcEEec-CCCCCCCCcccCChHHHHHHcCCCc
Q 013226 338 RLMEGDHV-GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFR-PNTEDDPHKRKPDITKAKQLLGWEP 403 (447)
Q Consensus 338 ~~l~~~~~-g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~-~~~~~~~~~~~~d~~k~~~~lG~~p 403 (447)
.+++++.. |.|+++++....+.++++.+++.+.. .++... +..........+++.|+++ |||+.
T Consensus 231 ~al~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~k~~~-l~~~~ 296 (297)
T PLN02583 231 RAFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLSPL-IPSPPPYEMQGSEVYQQRIRNKKLNK-LMEDF 296 (297)
T ss_pred HHhcCcccCCcEEEecCCCccHHHHHHHHHHhCCC-CCCCCcccccCCCccccccChHHHHH-hCccc
Confidence 99997654 57878765555678899999998753 222111 1001222445689999987 89864
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=267.90 Aligned_cols=248 Identities=23% Similarity=0.304 Sum_probs=188.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 190 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~~ 190 (447)
|+|+||||+||||++++++|+++|++|++++|..... . ..++.++.+|+.+. .+.++|+|||||+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~---~-----~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS---W-----PSSADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh---c-----ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5799999999999999999999999999999863221 1 12467788888664 356799999999853
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHH
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLT 269 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~ 269 (447)
.+ .+++|+.++.+++++|++.++ +||++||.. |..+|.++
T Consensus 73 ~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------------------------------K~aaE~ll 113 (854)
T PRK05865 73 GR---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH------------------------------QPRVEQML 113 (854)
T ss_pred cc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------------------------------HHHHHHHH
Confidence 21 467999999999999999998 999999941 78888876
Q ss_pred HHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC--CCCc
Q 013226 270 MDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD--HVGP 347 (447)
Q Consensus 270 ~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~--~~g~ 347 (447)
. +++++++++||+++|||+. ..++...+. .++...+++...++|+|++|+|++++.++++. ..++
T Consensus 114 ~----~~gl~~vILRp~~VYGP~~--------~~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~~ggv 180 (854)
T PRK05865 114 A----DCGLEWVAVRCALIFGRNV--------DNWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALLDTVIDSGP 180 (854)
T ss_pred H----HcCCCEEEEEeceEeCCCh--------HHHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHhCCCcCCCe
Confidence 4 3689999999999999962 234443332 22322344456679999999999999998754 3479
Q ss_pred EEecCCCccCHHHHHHHHHHHhC---CCCcEEecCCC--CCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHh
Q 013226 348 FNLGNPGEFTMLELAEVVQEIID---RNARIEFRPNT--EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 348 ~~i~~~~~~s~~el~~~i~~~~g---~~~~~~~~~~~--~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~ 422 (447)
||+++++.+|++|+++.+.+... .+......+.. ........+|++|++++|||+|+++++|+|+++++||+.++
T Consensus 181 yNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~dti~~~r~ri 260 (854)
T PRK05865 181 VNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAEECLEDFTLAVRGRI 260 (854)
T ss_pred EEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999987542 11111111000 01111336799999999999999999999999999999865
Q ss_pred c
Q 013226 423 F 423 (447)
Q Consensus 423 ~ 423 (447)
.
T Consensus 261 ~ 261 (854)
T PRK05865 261 G 261 (854)
T ss_pred c
Confidence 4
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=258.79 Aligned_cols=257 Identities=17% Similarity=0.182 Sum_probs=192.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCcc--ccc-cc-----c--------------CCCce
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKKD--NLI-HH-----F--------------GNPRF 165 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~~--~~~-~~-----~--------------~~~~v 165 (447)
...++|+|+|||||||||++|++.|++.+. +|+++.|....... .+. .. + ...++
T Consensus 7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv 86 (491)
T PLN02996 7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV 86 (491)
T ss_pred HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence 456889999999999999999999998753 68899986542211 110 00 0 01478
Q ss_pred EEEecccccc------------cccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEeCcc
Q 013226 166 ELIRHDVVEP------------ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSE 231 (447)
Q Consensus 166 ~~~~~D~~~~------------~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g~-r~v~~SS~~ 231 (447)
.++.+|+.++ .+.++|+|||+|+... +..++...+++|+.||.+++++|++. ++ +|||+||.+
T Consensus 87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~ 163 (491)
T PLN02996 87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN---FDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAY 163 (491)
T ss_pred EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccC---CcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeE
Confidence 8999999733 2346999999999654 33467889999999999999999986 55 899999999
Q ss_pred ccCCCCCCCCCCCcCCCC--------------------------------------------C---CCCCCChHHHHHHH
Q 013226 232 VYGDPLQHPQAETYWGNV--------------------------------------------N---PIGVRSCYDEGKRT 264 (447)
Q Consensus 232 v~g~~~~~~~~e~~~~~~--------------------------------------------~---~~~~~~~Y~~sK~~ 264 (447)
+||.... .+.|..+... . ...+.+.|+.||+.
T Consensus 164 vyG~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~ 242 (491)
T PLN02996 164 VCGEKSG-LILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAM 242 (491)
T ss_pred EecCCCc-eeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHH
Confidence 9986432 2222211100 0 12234789999999
Q ss_pred HHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCc-----hHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHH
Q 013226 265 AETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGR-----VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339 (447)
Q Consensus 265 ~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~ 339 (447)
+|.++..+.. +++++++||++||||++.+..+. ....++..+..+....+++++++.++++||+|++++++.+
T Consensus 243 aE~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a 320 (491)
T PLN02996 243 GEMLLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVA 320 (491)
T ss_pred HHHHHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHH
Confidence 9999988753 89999999999999987543322 1234455556666667889999999999999999999999
Q ss_pred HcCC-----CCCcEEecCC--CccCHHHHHHHHHHHhCCCC
Q 013226 340 MEGD-----HVGPFNLGNP--GEFTMLELAEVVQEIIDRNA 373 (447)
Q Consensus 340 l~~~-----~~g~~~i~~~--~~~s~~el~~~i~~~~g~~~ 373 (447)
+.+. ...+||++++ .++|+.|+++.+.+.++..+
T Consensus 321 ~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 321 MAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred HHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 8752 2348999988 88999999999999886543
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=245.43 Aligned_cols=268 Identities=16% Similarity=0.185 Sum_probs=201.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 190 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~~ 190 (447)
|+|+|||||||||++++++|+++|++|++++|+.... .. ....+++++.+|+.++ ++.++|+|||+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~-~~----l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA-SF----LKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh-hh----HhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence 5899999999999999999999999999999964321 11 1123678888998765 467899999997632
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHH
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLT 269 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~ 269 (447)
..++....++|+.++.+++++|+++|+ |||++||...... +.+.|..+|..+|.++
T Consensus 76 -----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~------------------~~~~~~~~K~~~e~~l 132 (317)
T CHL00194 76 -----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQY------------------PYIPLMKLKSDIEQKL 132 (317)
T ss_pred -----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccccccc------------------CCChHHHHHHHHHHHH
Confidence 123445778999999999999999998 9999999643210 1156889999999877
Q ss_pred HHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC--CCc
Q 013226 270 MDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH--VGP 347 (447)
Q Consensus 270 ~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~--~g~ 347 (447)
+ +.+++++++||+.+|+.. +..+....+.+.+..+ .++...++|+|++|+|++++.+++++. .++
T Consensus 133 ~----~~~l~~tilRp~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~ 199 (317)
T CHL00194 133 K----KSGIPYTIFRLAGFFQGL--------ISQYAIPILEKQPIWI-TNESTPISYIDTQDAAKFCLKSLSLPETKNKT 199 (317)
T ss_pred H----HcCCCeEEEeecHHhhhh--------hhhhhhhhccCCceEe-cCCCCccCccCHHHHHHHHHHHhcCccccCcE
Confidence 4 368999999999888531 1222223334455444 344566799999999999999998653 359
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCC-----------C---------------C-CcccCChHHHHHHcC
Q 013226 348 FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED-----------D---------------P-HKRKPDITKAKQLLG 400 (447)
Q Consensus 348 ~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~-----------~---------------~-~~~~~d~~k~~~~lG 400 (447)
||+++++.+|++|+++.+.+.+|.+..+...|.... . . .....+.+++.+.||
T Consensus 200 ~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 279 (317)
T CHL00194 200 FPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSSMAELYKIFK 279 (317)
T ss_pred EEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCCHHHHHHHhC
Confidence 999999999999999999999998877655443100 0 0 022346778899999
Q ss_pred CCcc--CCHHHHHHHHHHHHHHHhcC
Q 013226 401 WEPR--VTLRKGLPLMVADFRHRIFG 424 (447)
Q Consensus 401 ~~p~--~s~~e~l~~~~~~~~~~~~~ 424 (447)
+.|. .++++++++.+...++++-+
T Consensus 280 ~~p~~~~~~~~~~~~~~~~~~~~~~~ 305 (317)
T CHL00194 280 IDPNELISLEDYFQEYFERILKRLKD 305 (317)
T ss_pred CChhhhhhHHHHHHHHHHHHHHHHHh
Confidence 9984 58999999999988876643
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=264.59 Aligned_cols=299 Identities=23% Similarity=0.254 Sum_probs=215.5
Q ss_pred CeEEEEcCCChhHHHHHHHHH--hCCCeEEEEecCCCCCc-cccccccCCCceEEEeccccccc----------ccCCCE
Q 013226 116 LRILVTGGAGFVGSHLVDRLM--DRGDSVIVVDNYFTGKK-DNLIHHFGNPRFELIRHDVVEPI----------LLEVDQ 182 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~--~~G~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~----------~~~~d~ 182 (447)
|+|||||||||||++|+++|+ ++|++|++++|...... ..+.......+++++.+|+.++. +.++|+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D~ 80 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDIDH 80 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCCE
Confidence 579999999999999999999 58999999999532211 11111112246888999988742 257999
Q ss_pred EEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHH
Q 013226 183 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEG 261 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~s 261 (447)
||||||.... .....+..++|+.|+.+++++|++.++ +|||+||.++||... .+.+|+.+.. +..+.+.|+.+
T Consensus 81 Vih~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~-~~~~e~~~~~--~~~~~~~Y~~s 154 (657)
T PRK07201 81 VVHLAAIYDL---TADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYE-GVFREDDFDE--GQGLPTPYHRT 154 (657)
T ss_pred EEECceeecC---CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCcc-Cccccccchh--hcCCCCchHHH
Confidence 9999996432 234567889999999999999999987 999999999998543 3445553321 22234679999
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCC-----chHHHHHHHHHhC-CCeEEecCCCeeEccccHHHHHHH
Q 013226 262 KRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDG-----RVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 262 K~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~D~a~a 335 (447)
|..+|.++++ ..+++++++||++||||....... .++..++...... ..++.++.+....+++|++|++++
T Consensus 155 K~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~a 231 (657)
T PRK07201 155 KFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADA 231 (657)
T ss_pred HHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHH
Confidence 9999999875 358999999999999986432111 1222233333111 123344555567899999999999
Q ss_pred HHHHHcCCC--CCcEEecCCCccCHHHHHHHHHHHhCCCC---cEEecCCCC----------------------C-----
Q 013226 336 LIRLMEGDH--VGPFNLGNPGEFTMLELAEVVQEIIDRNA---RIEFRPNTE----------------------D----- 383 (447)
Q Consensus 336 i~~~l~~~~--~g~~~i~~~~~~s~~el~~~i~~~~g~~~---~~~~~~~~~----------------------~----- 383 (447)
++.+++.+. .++||+++++++++.|+++.+.+.+|.+. .+...|... .
T Consensus 232 i~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (657)
T PRK07201 232 LDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAVATQLGIPPEV 311 (657)
T ss_pred HHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHHHHHhcCCCHHH
Confidence 999987643 34999999999999999999999999876 333223210 0
Q ss_pred ---CCCcccCChHHHHHHc---CCCccCCHHHHHHHHHHHHHHHhcC
Q 013226 384 ---DPHKRKPDITKAKQLL---GWEPRVTLRKGLPLMVADFRHRIFG 424 (447)
Q Consensus 384 ---~~~~~~~d~~k~~~~l---G~~p~~s~~e~l~~~~~~~~~~~~~ 424 (447)
......+|++++++.| |+... .+++.+...+++|.+++..
T Consensus 312 l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~~~ 357 (657)
T PRK07201 312 LDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHLDP 357 (657)
T ss_pred HHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcCCh
Confidence 0112367999999988 66666 7889999999999888643
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-27 Score=212.12 Aligned_cols=277 Identities=20% Similarity=0.269 Sum_probs=197.4
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccccc-CCCEEEEeccCCCCCC-c
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL-EVDQIYHLACPASPVH-Y 195 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~d~Vih~Ag~~~~~~-~ 195 (447)
|+|||||||||++|+.+|.+.||+|+++.|+.......... .+. ..+..+.... ++|+|||+||..-... |
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~-----~v~--~~~~~~~~~~~~~DavINLAG~~I~~rrW 73 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHP-----NVT--LWEGLADALTLGIDAVINLAGEPIAERRW 73 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCc-----ccc--ccchhhhcccCCCCEEEECCCCccccccC
Confidence 68999999999999999999999999999986655444321 122 2333333333 7999999999654333 4
Q ss_pred ccC-hHHHHHHHHHHHHHHHHHHHHCC--C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHH
Q 013226 196 KFN-PVKTIKTNVVGTLNMLGLAKRVG--A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD 271 (447)
Q Consensus 196 ~~~-~~~~~~~Nv~gt~~ll~aa~~~g--~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~ 271 (447)
... .+...+.-+..|+.|.++..+.. . .+|.-|.++.||+..+..++|+. +... ..-++.-..-|.....
T Consensus 74 t~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~-----~~g~-~Fla~lc~~WE~~a~~ 147 (297)
T COG1090 74 TEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEES-----PPGD-DFLAQLCQDWEEEALQ 147 (297)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCC-----CCCC-ChHHHHHHHHHHHHhh
Confidence 443 55688899999999999987554 3 56666666689999988999883 3221 2223333333444433
Q ss_pred HHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC-CCCcEEe
Q 013226 272 YHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD-HVGPFNL 350 (447)
Q Consensus 272 ~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~-~~g~~~i 350 (447)
++..|.+++.+|.|+|.+|. +.++..++.....+-..+ .|+|+++++|||++|+++++.++++++ ..|.||+
T Consensus 148 -a~~~gtRvvllRtGvVLs~~-----GGaL~~m~~~fk~glGG~-~GsGrQ~~SWIhieD~v~~I~fll~~~~lsGp~N~ 220 (297)
T COG1090 148 -AQQLGTRVVLLRTGVVLSPD-----GGALGKMLPLFKLGLGGK-LGSGRQWFSWIHIEDLVNAILFLLENEQLSGPFNL 220 (297)
T ss_pred -hhhcCceEEEEEEEEEecCC-----CcchhhhcchhhhccCCc-cCCCCceeeeeeHHHHHHHHHHHHhCcCCCCcccc
Confidence 23458999999999999975 344455444333332233 589999999999999999999999995 5699999
Q ss_pred cCCCccCHHHHHHHHHHHhCCCCcEEecCCC-----CCC-----CCcccCChHHHHHHcCCCccC-CHHHHHHHHHH
Q 013226 351 GNPGEFTMLELAEVVQEIIDRNARIEFRPNT-----EDD-----PHKRKPDITKAKQLLGWEPRV-TLRKGLPLMVA 416 (447)
Q Consensus 351 ~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-----~~~-----~~~~~~d~~k~~~~lG~~p~~-s~~e~l~~~~~ 416 (447)
++|.|++.+|+.+.+.+.++++..+. .|.. .+. .....+-..|+.+ .||+.+| +++++|.+.+.
T Consensus 221 taP~PV~~~~F~~al~r~l~RP~~~~-vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~-aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 221 TAPNPVRNKEFAHALGRALHRPAILP-VPSFALRLLLGEMADLLLGGQRVLPKKLEA-AGFQFQYPDLEEALADILK 295 (297)
T ss_pred cCCCcCcHHHHHHHHHHHhCCCcccc-CcHHHHHHHhhhhHHHHhccchhhHHHHHH-CCCeeecCCHHHHHHHHHh
Confidence 99999999999999999999876543 2221 011 1123334566665 7999998 79999888764
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=229.40 Aligned_cols=234 Identities=27% Similarity=0.351 Sum_probs=201.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc---cccccccCCCceEEEeccccccc-----ccC--C
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK---DNLIHHFGNPRFELIRHDVVEPI-----LLE--V 180 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~---~~~~~~~~~~~v~~~~~D~~~~~-----~~~--~ 180 (447)
...||+||||||+|.||+++++++++.+. ++++++|++.... .++.......++.++-+|+.|.. +.+ +
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 36899999999999999999999999986 7788888644321 22222233467888889998764 445 9
Q ss_pred CEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHH
Q 013226 181 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYD 259 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~ 259 (447)
|+|||+|+.-...-.+.+|.+.+++|+.||.|++++|.++|+ +||++||.- ..+|.+.||
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDK-------------------AV~PtNvmG 387 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDK-------------------AVNPTNVMG 387 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCc-------------------ccCCchHhh
Confidence 999999999888888999999999999999999999999999 999999963 455668999
Q ss_pred HHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHH
Q 013226 260 EGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 260 ~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai 336 (447)
.||+.+|.++.++++.. +-+++++|.|||.|. .+++++-|..++.+|+++++ .+++.++-|+.+.|.++.+
T Consensus 388 aTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGS-----rGSViPlFk~QI~~GgplTv-Tdp~mtRyfMTI~EAv~LV 461 (588)
T COG1086 388 ATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGS-----RGSVIPLFKKQIAEGGPLTV-TDPDMTRFFMTIPEAVQLV 461 (588)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEEecceecC-----CCCCHHHHHHHHHcCCCccc-cCCCceeEEEEHHHHHHHH
Confidence 99999999999997643 378999999999995 47899999999999999997 4778999999999999999
Q ss_pred HHHHcCCCCC-cEEecCCCccCHHHHHHHHHHHhC
Q 013226 337 IRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIID 370 (447)
Q Consensus 337 ~~~l~~~~~g-~~~i~~~~~~s~~el~~~i~~~~g 370 (447)
+.+......| +|.+-.|+++++.|+++.+-+..|
T Consensus 462 lqA~a~~~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 462 LQAGAIAKGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHHHhhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 9999887766 888888999999999999999997
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=228.68 Aligned_cols=250 Identities=22% Similarity=0.274 Sum_probs=182.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCc--cccccc-----c-----CCCceEEEeccccccc------
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKK--DNLIHH-----F-----GNPRFELIRHDVVEPI------ 176 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~--~~~~~~-----~-----~~~~v~~~~~D~~~~~------ 176 (447)
+|+|||||||||++|+++|+++| ++|+++.|...... +.+... . ...++.++.+|+.++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 48999999999999999999999 67999998644210 011000 0 0046888999986543
Q ss_pred -----ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 177 -----LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 177 -----~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
..++|+||||||... +........++|+.|+.+++++|.+.++ +|+++||.++|+.....+..|+......
T Consensus 81 ~~~~~~~~~d~vih~a~~~~---~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~ 157 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVN---WVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTP 157 (367)
T ss_pred HHHHHHhhCCEEEeCCcEec---cCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccccc
Confidence 246999999998643 2335667888999999999999999887 7999999999976443333333211111
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCcc--CCCchHHHHHHHHHhCCCeEEecCCC-eeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGK-QTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i 327 (447)
...+.+.|+.+|+.+|.+++.+.+. |++++++|||.+||+.... ....++..++......+..+ ... ...+|+
T Consensus 158 ~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~ 233 (367)
T TIGR01746 158 PPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYP---DSPELTEDLT 233 (367)
T ss_pred ccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCC---CCCccccCcc
Confidence 2223468999999999999887654 9999999999999974321 22334555555554443322 222 356899
Q ss_pred cHHHHHHHHHHHHcCCC----CCcEEecCCCccCHHHHHHHHHHHhCCCCc
Q 013226 328 FVSDLVEGLIRLMEGDH----VGPFNLGNPGEFTMLELAEVVQEIIDRNAR 374 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~----~g~~~i~~~~~~s~~el~~~i~~~~g~~~~ 374 (447)
|++|++++++.++.++. .++||+++++++++.|+++.+.+ .|.+.+
T Consensus 234 ~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 234 PVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred cHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 99999999999987664 45999999999999999999998 776644
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=221.74 Aligned_cols=239 Identities=28% Similarity=0.352 Sum_probs=174.2
Q ss_pred EEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc---cccccccCCCceE----EEeccccccc-----cc--CCCE
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK---DNLIHHFGNPRFE----LIRHDVVEPI-----LL--EVDQ 182 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~---~~~~~~~~~~~v~----~~~~D~~~~~-----~~--~~d~ 182 (447)
||||||+|.||+.|+++|++.+. +++++++++...- .++.......++. .+-+|+.+.. +. ++|+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 79999999999999999999985 7999998644321 1121112223343 4577887763 44 7999
Q ss_pred EEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHH
Q 013226 183 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEG 261 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~s 261 (447)
|||.|+.-.....+.++.+.+++|+.||.|++++|.++++ +||++||.- ..+|.+.||.|
T Consensus 81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDK-------------------Av~PtnvmGat 141 (293)
T PF02719_consen 81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDK-------------------AVNPTNVMGAT 141 (293)
T ss_dssp EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECG-------------------CSS--SHHHHH
T ss_pred EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-------------------cCCCCcHHHHH
Confidence 9999998777777889999999999999999999999999 999999974 34456899999
Q ss_pred HHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHH
Q 013226 262 KRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338 (447)
Q Consensus 262 K~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~ 338 (447)
|+.+|.++..++... +..++++|.|||.|. .+++++.|..++.+++++++. +++.++-|+.+++.++.++.
T Consensus 142 KrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS-----~GSVip~F~~Qi~~g~PlTvT-~p~mtRffmti~EAv~Lvl~ 215 (293)
T PF02719_consen 142 KRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGS-----RGSVIPLFKKQIKNGGPLTVT-DPDMTRFFMTIEEAVQLVLQ 215 (293)
T ss_dssp HHHHHHHHHHHCCTSSSS--EEEEEEE-EETTG-----TTSCHHHHHHHHHTTSSEEEC-ETT-EEEEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCCCCcEEEEEEecceecC-----CCcHHHHHHHHHHcCCcceeC-CCCcEEEEecHHHHHHHHHH
Confidence 999999999987655 689999999999995 478999999999999999975 56788999999999999999
Q ss_pred HHcCCCCC-cEEecCCCccCHHHHHHHHHHHhCC------CCcEEecCCC
Q 013226 339 LMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDR------NARIEFRPNT 381 (447)
Q Consensus 339 ~l~~~~~g-~~~i~~~~~~s~~el~~~i~~~~g~------~~~~~~~~~~ 381 (447)
+......| +|.+-.++++++.|+++.+.+..|. +.++.+....
T Consensus 216 a~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g~~~~~~~~i~I~~~GlR 265 (293)
T PF02719_consen 216 AAALAKGGEIFVLDMGEPVKILDLAEAMIELSGLEPGKKPDIPIKFTGLR 265 (293)
T ss_dssp HHHH--TTEEEEE---TCEECCCHHHHHHHHTT-EEEESSSS-EEE----
T ss_pred HHhhCCCCcEEEecCCCCcCHHHHHHHHHhhcccccccCCCcceEEcCCC
Confidence 98876555 8888888999999999999999974 3455554433
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=229.13 Aligned_cols=234 Identities=22% Similarity=0.260 Sum_probs=182.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc--ccc-ccCCCceEEEeccccccc-----cc----C
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN--LIH-HFGNPRFELIRHDVVEPI-----LL----E 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~--~~~-~~~~~~v~~~~~D~~~~~-----~~----~ 179 (447)
..++++|+||||+||||++++++|+++|++|++++|........ ... .....+++++.+|+++.. +. +
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 45788999999999999999999999999999999965432110 000 001236788899987763 33 5
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChH
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCY 258 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y 258 (447)
+|+||||++.... .....+++|+.++.+++++|++.|+ +||++||.++++ +...|
T Consensus 137 ~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~-------------------p~~~~ 192 (390)
T PLN02657 137 VDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK-------------------PLLEF 192 (390)
T ss_pred CcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC-------------------cchHH
Confidence 9999999974221 1234567899999999999999998 899999987652 12568
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE-ccccHHHHHHHHH
Q 013226 259 DEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR-SFQFVSDLVEGLI 337 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~D~a~ai~ 337 (447)
..+|...|..+.. ...+++++++||+.+||+. ..++..+..++++.++++++..+ ++||++|+|++++
T Consensus 193 ~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~---------~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~ 261 (390)
T PLN02657 193 QRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL---------GGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIA 261 (390)
T ss_pred HHHHHHHHHHHHh--ccCCCCEEEEccHHHhccc---------HHHHHhhccCCceEEecCCcccccCceeHHHHHHHHH
Confidence 8999999998765 3478999999999999753 33455666788888888887654 6799999999999
Q ss_pred HHHcCCC--CCcEEecCC-CccCHHHHHHHHHHHhCCCCcEEecCC
Q 013226 338 RLMEGDH--VGPFNLGNP-GEFTMLELAEVVQEIIDRNARIEFRPN 380 (447)
Q Consensus 338 ~~l~~~~--~g~~~i~~~-~~~s~~el~~~i~~~~g~~~~~~~~~~ 380 (447)
.++.++. .++||++++ +.+|++|+++.+.+.+|++..+...|.
T Consensus 262 ~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp~ 307 (390)
T PLN02657 262 DCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVPI 307 (390)
T ss_pred HHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcCH
Confidence 9987543 369999986 589999999999999998877766553
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-26 Score=243.49 Aligned_cols=264 Identities=19% Similarity=0.242 Sum_probs=189.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEE-EecCCCCCccccccccCCCceEEEecccccccc--cCCCEEEEecc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIV-VDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL--LEVDQIYHLAC 188 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~-l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~Vih~Ag 188 (447)
..+.|+||||||+||||++|++.|.++|++|.. ..+ +.+.+.....+ .++|+|||||+
T Consensus 377 ~~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~~-------------------l~d~~~v~~~i~~~~pd~Vih~Aa 437 (668)
T PLN02260 377 GKPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGR-------------------LEDRSSLLADIRNVKPTHVFNAAG 437 (668)
T ss_pred CCCCceEEEECCCchHHHHHHHHHHhCCCeEEeeccc-------------------cccHHHHHHHHHhhCCCEEEECCc
Confidence 346689999999999999999999999998842 211 01111111222 26899999999
Q ss_pred CCCC---CCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCC------CCCCCCCCcCCCCCCCCCCChHH
Q 013226 189 PASP---VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP------LQHPQAETYWGNVNPIGVRSCYD 259 (447)
Q Consensus 189 ~~~~---~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~------~~~~~~e~~~~~~~~~~~~~~Y~ 259 (447)
.... ..++.++.+.+++|+.|+.+|+++|++.|+++|++||.++|+.. ...+++|++ .+..+.+.|+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~----~~~~~~~~Yg 513 (668)
T PLN02260 438 VTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFATGCIFEYDAKHPEGSGIGFKEED----KPNFTGSFYS 513 (668)
T ss_pred ccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcccceecCCcccccccCCCCCcCC----CCCCCCChhh
Confidence 8642 23455788899999999999999999999988999999998642 123677763 2323348899
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHH
Q 013226 260 EGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339 (447)
Q Consensus 260 ~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~ 339 (447)
.||.++|.++..+. +..++|+.++||.+.. .. .+|+..+++.......+ .+..+++|++.+++.+
T Consensus 514 ~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~-~~----~nfv~~~~~~~~~~~vp-----~~~~~~~~~~~~~~~l 578 (668)
T PLN02260 514 KTKAMVEELLREYD-----NVCTLRVRMPISSDLS-NP----RNFITKISRYNKVVNIP-----NSMTVLDELLPISIEM 578 (668)
T ss_pred HHHHHHHHHHHhhh-----hheEEEEEEecccCCC-Cc----cHHHHHHhccceeeccC-----CCceehhhHHHHHHHH
Confidence 99999999998863 4667788888864321 11 34555555544322111 2467788999998888
Q ss_pred HcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCc---EE--ecC--CCCCCCCcccCChHHHHHHcCCCccCCHHHHHH
Q 013226 340 MEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNAR---IE--FRP--NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLP 412 (447)
Q Consensus 340 l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~---~~--~~~--~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~ 412 (447)
++++..|+||+++++.+||.|+++.|.+.++.... +. ..+ .....+.. .+|++|+++.+|+ +. +|+|+|.
T Consensus 579 ~~~~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l~~~k~~~~~~~-~~-~~~~~l~ 655 (668)
T PLN02260 579 AKRNLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EMDASKLKKEFPE-LL-SIKESLI 655 (668)
T ss_pred HHhCCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-cccHHHHHHhCcc-cc-chHHHHH
Confidence 88666689999999999999999999998853211 11 111 12223445 7999999998898 66 9999999
Q ss_pred HHHH
Q 013226 413 LMVA 416 (447)
Q Consensus 413 ~~~~ 416 (447)
+++.
T Consensus 656 ~~~~ 659 (668)
T PLN02260 656 KYVF 659 (668)
T ss_pred HHHh
Confidence 8875
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=232.50 Aligned_cols=234 Identities=22% Similarity=0.323 Sum_probs=176.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc----ccCCCEEEEeccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI----LLEVDQIYHLACPAS 191 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~----~~~~d~Vih~Ag~~~ 191 (447)
|+||||||+||||++|+++|+++|++|++++|..... ...+++++.+|+.+.. +.++|+|||+|+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~--------~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA--------LDPRVDYVCASLRNPVLQELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc--------ccCCceEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence 5799999999999999999999999999999853211 1236788999987764 357999999998532
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHH
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD 271 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~ 271 (447)
. ....+|+.|+.|++++|++.|+++||+||. +|.+ ..|. .+|.++..
T Consensus 73 ~--------~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~--~G~~-------------------~~~~----~aE~ll~~ 119 (699)
T PRK12320 73 S--------APGGVGITGLAHVANAAARAGARLLFVSQA--AGRP-------------------ELYR----QAETLVST 119 (699)
T ss_pred c--------chhhHHHHHHHHHHHHHHHcCCeEEEEECC--CCCC-------------------cccc----HHHHHHHh
Confidence 1 122589999999999999999999999986 3321 0122 35665533
Q ss_pred HHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEec
Q 013226 272 YHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLG 351 (447)
Q Consensus 272 ~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~ 351 (447)
++++++++|++++|||+......+++..++.....++++. ++||+|++++++.+++.+..|+|||+
T Consensus 120 ----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI~----------vIyVdDvv~alv~al~~~~~GiyNIG 185 (699)
T PRK12320 120 ----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARPIR----------VLHLDDLVRFLVLALNTDRNGVVDLA 185 (699)
T ss_pred ----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCceE----------EEEHHHHHHHHHHHHhCCCCCEEEEe
Confidence 5689999999999999764433456666666555544443 48999999999999988767899999
Q ss_pred CCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHH
Q 013226 352 NPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRK 409 (447)
Q Consensus 352 ~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e 409 (447)
+++.+|+.|+++.+... +....+. ...+......|....+..++|.|+..++.
T Consensus 186 ~~~~~Si~el~~~i~~~-~p~~~~~----~~~~~~~~~pdi~~a~~~~~w~~~~~~~~ 238 (699)
T PRK12320 186 TPDTTNVVTAWRLLRSV-DPHLRTR----RVRSWEQLIPEVDIAAVQEDWNFEFGWQA 238 (699)
T ss_pred CCCeeEHHHHHHHHHHh-CCCcccc----ccccHHHhCCCCchhhhhcCCCCcchHHH
Confidence 99999999999999776 2222221 22444456778888888899999987765
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-25 Score=198.54 Aligned_cols=236 Identities=18% Similarity=0.262 Sum_probs=193.5
Q ss_pred hccCCCCCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc---
Q 013226 101 VNAGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL--- 177 (447)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--- 177 (447)
...|++ .+.+|-.+-|+|||||+|++++++|.+.|.+|++-.|..+.....++-.....++-+...|+.|++.
T Consensus 51 kGtGGR----sS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~ 126 (391)
T KOG2865|consen 51 KGTGGR----SSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRA 126 (391)
T ss_pred CCCCCc----ccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHH
Confidence 345555 5678889999999999999999999999999999998766555444444456688888888888753
Q ss_pred --cCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 178 --LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 178 --~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
...++|||+.| .+++.......++|+.+.++|.+.|++.|+ |||++|+.+.- ...
T Consensus 127 vvk~sNVVINLIG----rd~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lgan------------------v~s 184 (391)
T KOG2865|consen 127 VVKHSNVVINLIG----RDYETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGAN------------------VKS 184 (391)
T ss_pred HHHhCcEEEEeec----cccccCCcccccccchHHHHHHHHHHhhChhheeehhhcccc------------------ccC
Confidence 45899999998 344555556778999999999999999999 99999998621 112
Q ss_pred CChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC-eeEccccHHHHH
Q 013226 255 RSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK-QTRSFQFVSDLV 333 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~D~a 333 (447)
.+-|-.+|+++|..+++... ..+|+||+.|||.. .+|+..+.....+-+.+++++.|. .....+||-|+|
T Consensus 185 ~Sr~LrsK~~gE~aVrdafP----eAtIirPa~iyG~e-----Drfln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVa 255 (391)
T KOG2865|consen 185 PSRMLRSKAAGEEAVRDAFP----EATIIRPADIYGTE-----DRFLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVA 255 (391)
T ss_pred hHHHHHhhhhhHHHHHhhCC----cceeechhhhcccc-----hhHHHHHHHHHHhcCceeeecCCcceeeccEEEehHH
Confidence 27799999999999998654 58999999999964 577777777777788899998774 457899999999
Q ss_pred HHHHHHHcCCCC-C-cEEecCCCccCHHHHHHHHHHHhCC
Q 013226 334 EGLIRLMEGDHV-G-PFNLGNPGEFTMLELAEVVQEIIDR 371 (447)
Q Consensus 334 ~ai~~~l~~~~~-g-~~~i~~~~~~s~~el~~~i~~~~g~ 371 (447)
++|+.++.++.. | +|..++|+.+.+.|+++.+.+....
T Consensus 256 a~IvnAvkDp~s~Gktye~vGP~~yql~eLvd~my~~~~~ 295 (391)
T KOG2865|consen 256 AAIVNAVKDPDSMGKTYEFVGPDRYQLSELVDIMYDMARE 295 (391)
T ss_pred HHHHHhccCccccCceeeecCCchhhHHHHHHHHHHHHhh
Confidence 999999998865 3 9999999999999999998877643
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-25 Score=207.23 Aligned_cols=212 Identities=24% Similarity=0.298 Sum_probs=129.6
Q ss_pred EEcCCChhHHHHHHHHHhCCC--eEEEEecCCCC--Ccccccccc------------CCCceEEEecccccccc------
Q 013226 120 VTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTG--KKDNLIHHF------------GNPRFELIRHDVVEPIL------ 177 (447)
Q Consensus 120 VtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~--~~~~~~~~~------------~~~~v~~~~~D~~~~~~------ 177 (447)
|||||||||++|+.+|++++. +|+++.|.... ..+.+...+ ...++.++.+|+.++.+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999987 89999996532 111121111 15689999999988753
Q ss_pred -----cCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCC------CCCCc
Q 013226 178 -----LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHP------QAETY 245 (447)
Q Consensus 178 -----~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~------~~e~~ 245 (447)
.++|+||||||.. .+..+..+..++|+.||.++++.|.+.+. +|+|+||..+.+...... ..+..
T Consensus 81 ~~~L~~~v~~IiH~Aa~v---~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~~~~~~ 157 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASV---NFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYPEEEDD 157 (249)
T ss_dssp HHHHHHH--EEEE--SS----SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-HHH--E
T ss_pred hhccccccceeeecchhh---hhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCccccccccccccc
Confidence 3599999999854 44556777899999999999999986654 999999955655433221 11111
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCc--cCCCchHHHHHHHHHhCCCeE-EecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMC--IDDGRVVSNFVAQALRKEPLT-VYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 322 (447)
. .......+.|.+||+.+|.+++++.++.|++++|+|||.|+|.... .+...++..++......+.++ ..++.+.
T Consensus 158 ~--~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 235 (249)
T PF07993_consen 158 L--DPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDPDA 235 (249)
T ss_dssp E--E--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB---T
T ss_pred c--hhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCCCc
Confidence 1 1233445799999999999999998888999999999999994322 233443455555555544444 4455455
Q ss_pred eEccccHHHHHHHH
Q 013226 323 TRSFQFVSDLVEGL 336 (447)
Q Consensus 323 ~~~~i~v~D~a~ai 336 (447)
..++++||.+|++|
T Consensus 236 ~~d~vPVD~va~aI 249 (249)
T PF07993_consen 236 RLDLVPVDYVARAI 249 (249)
T ss_dssp T--EEEHHHHHHHH
T ss_pred eEeEECHHHHHhhC
Confidence 68999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-24 Score=219.70 Aligned_cols=255 Identities=17% Similarity=0.174 Sum_probs=182.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCc--cccccc--------------------cCCCce
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKK--DNLIHH--------------------FGNPRF 165 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~--~~~~~~--------------------~~~~~v 165 (447)
...++|+|||||||||||++|++.|++.+. +|+++.|...... +.+... ....++
T Consensus 115 ~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki 194 (605)
T PLN02503 115 EFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKL 194 (605)
T ss_pred hhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccE
Confidence 457899999999999999999999998764 6799988543221 111000 012468
Q ss_pred EEEeccccccc-----------ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccc
Q 013226 166 ELIRHDVVEPI-----------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEV 232 (447)
Q Consensus 166 ~~~~~D~~~~~-----------~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v 232 (447)
..+.+|++++. ..++|+|||+|+... +..++...+++|+.|+.+++++|++.+ . +|||+||.+|
T Consensus 195 ~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~---f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayV 271 (605)
T PLN02503 195 VPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT---FDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYV 271 (605)
T ss_pred EEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc---cccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCcee
Confidence 88999998863 245999999998654 345678899999999999999998875 3 8999999999
Q ss_pred cCCCCCCCCCCCcCCC----------------------------------C--------------------CCCCCCChH
Q 013226 233 YGDPLQHPQAETYWGN----------------------------------V--------------------NPIGVRSCY 258 (447)
Q Consensus 233 ~g~~~~~~~~e~~~~~----------------------------------~--------------------~~~~~~~~Y 258 (447)
||... +.+.|..+.. . ......+.|
T Consensus 272 yG~~~-G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtY 350 (605)
T PLN02503 272 NGQRQ-GRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTY 350 (605)
T ss_pred ecCCC-CeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChH
Confidence 98753 2333433210 0 002234899
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC----CC-chHHHHHHHHHhCCCeEEecCCCeeEccccHHHHH
Q 013226 259 DEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID----DG-RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 333 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 333 (447)
..+|+.+|.++++.. .+++++|+||+.|.+....+. ++ ......+....+|.-..++++++...|+|+||.|+
T Consensus 351 t~TK~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vv 428 (605)
T PLN02503 351 VFTKAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVV 428 (605)
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHH
Confidence 999999999998754 379999999999944221111 11 11122222222333333678889999999999999
Q ss_pred HHHHHHHcC----C--CCCcEEecCC--CccCHHHHHHHHHHHhCC
Q 013226 334 EGLIRLMEG----D--HVGPFNLGNP--GEFTMLELAEVVQEIIDR 371 (447)
Q Consensus 334 ~ai~~~l~~----~--~~g~~~i~~~--~~~s~~el~~~i~~~~g~ 371 (447)
++++.++.. . ...+||++++ .+++|.|+++.+.+.+..
T Consensus 429 na~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 429 NATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred HHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 999988431 1 2359999988 899999999999987754
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=179.85 Aligned_cols=297 Identities=23% Similarity=0.284 Sum_probs=221.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc-cccC------CCceEEEecccccccc-------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI-HHFG------NPRFELIRHDVVEPIL-------L 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~-~~~~------~~~v~~~~~D~~~~~~-------~ 178 (447)
...|..||||-||.=|++|++.|+..||+|..+.|+...-..... +... .....+--+|++|... .
T Consensus 26 r~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i 105 (376)
T KOG1372|consen 26 RPRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI 105 (376)
T ss_pred ccceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc
Confidence 344679999999999999999999999999999887654332222 2222 2346677788888742 3
Q ss_pred CCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC----CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 179 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG----ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g----~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
+++-|+|+|+.+.....-+-++-.-++...||.+|+++.+..+ +||...||+..||.....|..|. .|+.|
T Consensus 106 kPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~-----TPFyP 180 (376)
T KOG1372|consen 106 KPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSET-----TPFYP 180 (376)
T ss_pred CchhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccC-----CCCCC
Confidence 6899999999876544444455667788999999999998876 49999999999999888999999 89999
Q ss_pred CChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHh----CC-CeEEecCCCeeEccccH
Q 013226 255 RSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALR----KE-PLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~i~v 329 (447)
.++|+.+|..+--++..|.+.+++-. +-|.+|..........|+..-+.+... +. .-...|+-+..++|-|.
T Consensus 181 RSPYa~aKmy~~WivvNyREAYnmfA---cNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA 257 (376)
T KOG1372|consen 181 RSPYAAAKMYGYWIVVNYREAYNMFA---CNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHA 257 (376)
T ss_pred CChhHHhhhhheEEEEEhHHhhccee---eccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchh
Confidence 99999999998888877877776533 335555544332345555554444332 22 22335777888999999
Q ss_pred HHHHHHHHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEe-----------------cCCCCCCC---Cccc
Q 013226 330 SDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEF-----------------RPNTEDDP---HKRK 389 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~-----------------~~~~~~~~---~~~~ 389 (447)
.|.++++..+++++....|.|+.++..|++|+++.....+|......- .......+ ....
T Consensus 258 ~dYVEAMW~mLQ~d~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd~Lq 337 (376)
T KOG1372|consen 258 GDYVEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVDTLQ 337 (376)
T ss_pred HHHHHHHHHHHhcCCCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccCcchhhhhc
Confidence 999999999999999999999999999999999999888874322210 00000011 1123
Q ss_pred CChHHHHHHcCCCccCCHHHHHHHHHHH
Q 013226 390 PDITKAKQLLGWEPRVTLRKGLPLMVAD 417 (447)
Q Consensus 390 ~d~~k~~~~lG~~p~~s~~e~l~~~~~~ 417 (447)
-|.+|+++.|||+|+.++.|-+++|+..
T Consensus 338 GdasKAk~~LgW~pkv~f~eLVkeMv~~ 365 (376)
T KOG1372|consen 338 GDASKAKKTLGWKPKVTFPELVKEMVAS 365 (376)
T ss_pred CChHHHHHhhCCCCccCHHHHHHHHHHh
Confidence 4899999999999999999999888864
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-23 Score=196.66 Aligned_cols=243 Identities=17% Similarity=0.183 Sum_probs=161.5
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccc-----ccc------cC-CCEEE
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE-----PIL------LE-VDQIY 184 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~------~~-~d~Vi 184 (447)
+|+||||||+||++++++|+++|++|+++.|+...... .+++.+.+|..+ .++ .+ +|.|+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~--------~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG--------PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC--------CCCccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 48999999999999999999999999999997543211 123334444443 344 56 99999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHH
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKR 263 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~ 263 (447)
|+++... + ......+++++|+++|+ |||++||..++.. +..+.
T Consensus 73 ~~~~~~~------~-------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~-----------------------~~~~~ 116 (285)
T TIGR03649 73 LVAPPIP------D-------LAPPMIKFIDFARSKGVRRFVLLSASIIEKG-----------------------GPAMG 116 (285)
T ss_pred EeCCCCC------C-------hhHHHHHHHHHHHHcCCCEEEEeeccccCCC-----------------------CchHH
Confidence 9986321 1 12345688999999998 9999999654311 01122
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
..|.++++ ..+++++++||++++.... . ..+...+.....+. .+.++...+|++++|+|++++.++.++
T Consensus 117 ~~~~~l~~---~~gi~~tilRp~~f~~~~~----~---~~~~~~~~~~~~~~-~~~g~~~~~~v~~~Dva~~~~~~l~~~ 185 (285)
T TIGR03649 117 QVHAHLDS---LGGVEYTVLRPTWFMENFS----E---EFHVEAIRKENKIY-SATGDGKIPFVSADDIARVAYRALTDK 185 (285)
T ss_pred HHHHHHHh---ccCCCEEEEeccHHhhhhc----c---cccccccccCCeEE-ecCCCCccCcccHHHHHHHHHHHhcCC
Confidence 23433322 1489999999998885321 0 00111122223333 455677889999999999999999875
Q ss_pred C--CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC--------CCCC----------------cccCChHHHHH
Q 013226 344 H--VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE--------DDPH----------------KRKPDITKAKQ 397 (447)
Q Consensus 344 ~--~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~--------~~~~----------------~~~~d~~k~~~ 397 (447)
. .+.|++++++.+|+.|+++.+.+.+|++......+... ..+. .....+..+++
T Consensus 186 ~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 265 (285)
T TIGR03649 186 VAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPEDLARMLASLDTAVKNGAEVRLNDVVKA 265 (285)
T ss_pred CcCCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCccccccchHHH
Confidence 3 35899999999999999999999999987665443210 0000 00112455566
Q ss_pred HcCCCccCCHHHHHHHHH
Q 013226 398 LLGWEPRVTLRKGLPLMV 415 (447)
Q Consensus 398 ~lG~~p~~s~~e~l~~~~ 415 (447)
.+|.+|+ ++++-+++..
T Consensus 266 ~~G~~p~-~~~~~~~~~~ 282 (285)
T TIGR03649 266 VTGSKPR-GFRDFAESNK 282 (285)
T ss_pred HhCcCCc-cHHHHHHHhh
Confidence 6787777 7777666543
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=226.01 Aligned_cols=252 Identities=16% Similarity=0.182 Sum_probs=181.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC----CeEEEEecCCCCCc--cccccc---------cCCCceEEEeccccccc--
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG----DSVIVVDNYFTGKK--DNLIHH---------FGNPRFELIRHDVVEPI-- 176 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G----~~V~~l~r~~~~~~--~~~~~~---------~~~~~v~~~~~D~~~~~-- 176 (447)
..++|+||||+||||.+++++|++++ ++|+++.|...... +.+... ....++.++.+|+.++.
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 45889999999999999999999987 78999988543211 111000 00136888999986543
Q ss_pred ---------ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCC---------
Q 013226 177 ---------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL--------- 237 (447)
Q Consensus 177 ---------~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~--------- 237 (447)
..++|+|||||+... +..........|+.|+.+++++|++.++ +|+|+||.++|+...
T Consensus 1050 l~~~~~~~l~~~~d~iiH~Aa~~~---~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~ 1126 (1389)
T TIGR03443 1050 LSDEKWSDLTNEVDVIIHNGALVH---WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELV 1126 (1389)
T ss_pred cCHHHHHHHHhcCCEEEECCcEec---CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhh
Confidence 246999999998653 3334555667899999999999998887 899999999986421
Q ss_pred ---CCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCcc--CCCchHHHHHHHHHhCC
Q 013226 238 ---QHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCI--DDGRVVSNFVAQALRKE 312 (447)
Q Consensus 238 ---~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~--~~~~~~~~~~~~~~~~~ 312 (447)
...+.|+.+....+..+.+.|+.||+.+|.++..+.+ .|++++++|||+|||+.... +...++..++......+
T Consensus 1127 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~ 1205 (1389)
T TIGR03443 1127 QAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCIQLG 1205 (1389)
T ss_pred hccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCCchhHHHHHHHHHHHhC
Confidence 1123444332222333457899999999999998765 49999999999999997542 22344555554444333
Q ss_pred CeEEecCCCeeEccccHHHHHHHHHHHHcCCCC----CcEEecCCCccCHHHHHHHHHHHhCCCC
Q 013226 313 PLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV----GPFNLGNPGEFTMLELAEVVQEIIDRNA 373 (447)
Q Consensus 313 ~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~----g~~~i~~~~~~s~~el~~~i~~~~g~~~ 373 (447)
.. ++....++|++|+|+|++++.++.++.. .+||++++..+++.++++.+.+. |.+.
T Consensus 1206 ~~---p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~~ 1266 (1389)
T TIGR03443 1206 LI---PNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY-GYDV 1266 (1389)
T ss_pred Cc---CCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh-CCCC
Confidence 22 3444568999999999999999876531 37999998899999999999764 5443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=193.27 Aligned_cols=245 Identities=22% Similarity=0.243 Sum_probs=172.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCC--cccccc---------ccCCCceEEEecccccccc------
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGK--KDNLIH---------HFGNPRFELIRHDVVEPIL------ 177 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~--~~~~~~---------~~~~~~v~~~~~D~~~~~~------ 177 (447)
++||+||||||+|.+|+.+|+.+-. +|+++.|..... .+.+.+ .....++..+.+|+.++.+
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 5799999999999999999999865 999999965421 111111 1234689999999987643
Q ss_pred -----cCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCC----cCC
Q 013226 178 -----LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAET----YWG 247 (447)
Q Consensus 178 -----~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~----~~~ 247 (447)
..+|.|||||+. .++-.++.+....||.||..+++.|..... .+.|+||++|+........+++ .-.
T Consensus 81 ~~~La~~vD~I~H~gA~---Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~ 157 (382)
T COG3320 81 WQELAENVDLIIHNAAL---VNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPT 157 (382)
T ss_pred HHHHhhhcceEEecchh---hcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccc
Confidence 349999999985 455667889999999999999999987655 5999999998865433322222 111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCc--cCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMC--IDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
........++|++||+.+|.++++..+. |++++|+|||.|.|+... .+...++..++..+++-+..+- .....+
T Consensus 158 ~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P~---~~~~~~ 233 (382)
T COG3320 158 RNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAPD---SEYSLD 233 (382)
T ss_pred ccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCCC---cccchh
Confidence 1122334589999999999999998765 999999999999998873 4456677888887777655541 122333
Q ss_pred cccHH-----------HHHHHHHHHHcCCCC--CcEE-ecCCCccCHHHHHHHHHH
Q 013226 326 FQFVS-----------DLVEGLIRLMEGDHV--GPFN-LGNPGEFTMLELAEVVQE 367 (447)
Q Consensus 326 ~i~v~-----------D~a~ai~~~l~~~~~--g~~~-i~~~~~~s~~el~~~i~~ 367 (447)
.+.++ -+++++..+...+.. ..|+ ...|..+...++.+.+.+
T Consensus 234 ~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 234 MLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred hCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence 34333 333344444432222 2444 334778999999998887
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=185.27 Aligned_cols=230 Identities=18% Similarity=0.196 Sum_probs=163.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCCCE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEVDQ 182 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~ 182 (447)
.|++|||||+||||++++++|+++|++|++++|+.... +.+.... ..++.++.+|+++.. ..++|+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDAL-DDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDV 79 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46899999999999999999999999999999864321 1111111 236788899997653 235899
Q ss_pred EEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 183 IYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
||||||......... .....+++|+.++.++++++ ++.+. +||++||..... +..
T Consensus 80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~ 143 (276)
T PRK06482 80 VVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI----------------AYP 143 (276)
T ss_pred EEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc----------------CCC
Confidence 999999765433222 24568889999999999997 44555 999999975321 111
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccc---cCCCCccCC-----CchHHHHHHHHHhCCCeEEecCCCe
Q 013226 254 VRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNT---YGPRMCIDD-----GRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i---~Gp~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+.+.|+.+|+..|.+++.++.+ ++++++++|||.+ ||++..... .......+...+..+.+.+
T Consensus 144 ~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 217 (276)
T PRK06482 144 GFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFAI------ 217 (276)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCCC------
Confidence 2478999999999999998765 5999999999987 665432110 0111112223333222221
Q ss_pred eEccccHHHHHHHHHHHHcCCCC-CcEEecCCCccCHHHHHHHHHHHhCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEIIDR 371 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~~~-g~~~i~~~~~~s~~el~~~i~~~~g~ 371 (447)
+.+++|++++++.++.++.. ..||++++...+..|+++.+.+.++.
T Consensus 218 ---~~d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK06482 218 ---PGDPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAALEA 264 (276)
T ss_pred ---CCCHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999986644 48999998888888888887777654
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-21 Score=181.31 Aligned_cols=225 Identities=17% Similarity=0.203 Sum_probs=153.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc------cc-cCCCEE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP------IL-LEVDQI 183 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~-~~~d~V 183 (447)
.+..+|+|+||||+|+||+.++++|+++|++|+++.|+......... ...++.++.+|+.+. .+ .++|+|
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v 89 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP---QDPSLQIVRADVTEGSDKLVEAIGDDSDAV 89 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc---cCCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence 34567899999999999999999999999999999886443211111 123578888888762 23 479999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHH
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK 262 (447)
||++|..... ++...+++|..++.++++++++.++ +||++||.++|+.....+.++.+ ....+...|...|
T Consensus 90 i~~~g~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~----~~~~~~~~~~~~k 161 (251)
T PLN00141 90 ICATGFRRSF----DPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAY----IFLNLFGLTLVAK 161 (251)
T ss_pred EECCCCCcCC----CCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcch----hHHHHHHHHHHHH
Confidence 9999854211 2223356899999999999999887 99999999999754332222211 1111123345567
Q ss_pred HHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcC
Q 013226 263 RTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 263 ~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
..+|.+++ +.+++++++||++++++... + ...+........++|+.+|+|++++.++.+
T Consensus 162 ~~~e~~l~----~~gi~~~iirpg~~~~~~~~----------------~-~~~~~~~~~~~~~~i~~~dvA~~~~~~~~~ 220 (251)
T PLN00141 162 LQAEKYIR----KSGINYTIVRPGGLTNDPPT----------------G-NIVMEPEDTLYEGSISRDQVAEVAVEALLC 220 (251)
T ss_pred HHHHHHHH----hcCCcEEEEECCCccCCCCC----------------c-eEEECCCCccccCcccHHHHHHHHHHHhcC
Confidence 77776654 35899999999999975321 1 111111111224579999999999999987
Q ss_pred CCC--CcEEecCCC---ccCHHHHHHHHHH
Q 013226 343 DHV--GPFNLGNPG---EFTMLELAEVVQE 367 (447)
Q Consensus 343 ~~~--g~~~i~~~~---~~s~~el~~~i~~ 367 (447)
+.. .++.+.+.+ ..++.++...+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 221 PESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred hhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 653 467777522 3788888877754
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=176.26 Aligned_cols=217 Identities=16% Similarity=0.157 Sum_probs=150.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~------------~ 177 (447)
.++++|+||||+||||++++++|+++|++|++++|+.....+.....+ ....+.++.+|+++.. +
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF 83 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356889999999999999999999999999999986433222221111 1235778889987753 1
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC----CCeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~----g~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
.++|+||||||......+. .+....+++|+.|+.++++++.+. +..++++++... .
T Consensus 84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~--~-------------- 147 (249)
T PRK09135 84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHA--E-------------- 147 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhh--c--------------
Confidence 3589999999975433222 234568899999999999998642 236666665321 1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
.+..+...|+.+|+.+|.+++.++.+. +++++++||+.++||... ..+...+......+.++. .+.
T Consensus 148 ~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~---~~~~~~~~~~~~~~~~~~---------~~~ 215 (249)
T PRK09135 148 RPLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDG---NSFDEEARQAILARTPLK---------RIG 215 (249)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCcccc---ccCCHHHHHHHHhcCCcC---------CCc
Confidence 344455889999999999999998775 699999999999999742 122222222333332221 123
Q ss_pred cHHHHHHHHHHHHcCCC--CC-cEEecCCCccC
Q 013226 328 FVSDLVEGLIRLMEGDH--VG-PFNLGNPGEFT 357 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~--~g-~~~i~~~~~~s 357 (447)
+++|+|+++..++.+.. .| +|++.++..++
T Consensus 216 ~~~d~a~~~~~~~~~~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 216 TPEDIAEAVRFLLADASFITGQILAVDGGRSLT 248 (249)
T ss_pred CHHHHHHHHHHHcCccccccCcEEEECCCeecc
Confidence 58999999977765432 23 79999887654
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=175.84 Aligned_cols=216 Identities=15% Similarity=0.070 Sum_probs=147.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------L 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------~ 178 (447)
+++|++|||||+|+||++++++|+++|++|++++|+.....+ ..... ...++.++.+|+.+... .
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANA-VADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHH-HHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 568899999999999999999999999999999986532211 11111 12357788899876531 3
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHH----HHHHHHHH-HHCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVG----TLNMLGLA-KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~g----t~~ll~aa-~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
++|+||||||......... .....+++|+.+ +.++++++ ++.+. +||++||...+..
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~------------- 150 (262)
T PRK13394 84 SVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEA------------- 150 (262)
T ss_pred CCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCC-------------
Confidence 4899999999754332222 244578899999 56666666 55555 9999999753311
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCc-------hHHHHHHHHHhCCCeEEec
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGR-------VVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 318 (447)
......|+.+|...+.+++.++.+ .+++++++||+.+++|........ .....+... +.
T Consensus 151 ---~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 219 (262)
T PRK13394 151 ---SPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKV--------ML 219 (262)
T ss_pred ---CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHH--------Hh
Confidence 112367999999999999998765 489999999999999853100000 000111111 12
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.+....+|++++|++++++.+++... .| .|++.++
T Consensus 220 ~~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g 258 (262)
T PRK13394 220 GKTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHG 258 (262)
T ss_pred cCCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCc
Confidence 22344679999999999999997643 24 5666654
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-20 Score=177.01 Aligned_cols=229 Identities=14% Similarity=0.124 Sum_probs=158.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEVD 181 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 181 (447)
++|+|+||||+|+||++++++|+++|++|++++|+.... +.+.... ...+.++.+|+.+.. +.++|
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 79 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATL-ADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRLD 79 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 467899999999999999999999999999999864322 1111111 235677888887652 23689
Q ss_pred EEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 182 QIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+||||||........ .+..+.+++|+.++.++++++ ++.+. ++|++||.+.+...
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~---------------- 143 (275)
T PRK08263 80 IVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAF---------------- 143 (275)
T ss_pred EEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCC----------------
Confidence 999999976543322 235568999999998888775 45555 99999998765321
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCC--C---chHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDD--G---RVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
.....|+.+|+..+.+++.++.+ .|++++++|||.+.++...... . ............. ....
T Consensus 144 ~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 214 (275)
T PRK08263 144 PMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQ---------WSER 214 (275)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHH---------HHhc
Confidence 12367999999999999998765 6899999999988776432100 0 0011111111110 0112
Q ss_pred cc-ccHHHHHHHHHHHHcCCCC-CcEEec-CCCccCHHHHHHHHHHHh
Q 013226 325 SF-QFVSDLVEGLIRLMEGDHV-GPFNLG-NPGEFTMLELAEVVQEII 369 (447)
Q Consensus 325 ~~-i~v~D~a~ai~~~l~~~~~-g~~~i~-~~~~~s~~el~~~i~~~~ 369 (447)
.+ ++++|++++++.+++.+.. +.|++. .++.+++.++.+.+.+.-
T Consensus 215 ~~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (275)
T PRK08263 215 SVDGDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATWE 262 (275)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHHH
Confidence 34 8899999999999997654 445554 446789999999998863
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-20 Score=172.57 Aligned_cols=215 Identities=16% Similarity=0.092 Sum_probs=151.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++|+|+||||+|+||++|+++|+++|++|+++.|+.....+.+.... ...++.++.+|+.+.. +.
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 83 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFG 83 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999999999887775443222222111 1245788889987653 13
Q ss_pred CCCEEEEeccCCCCCCc----ccChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+|||+||....... .....+.+++|+.++.++++.+ ++.+. +||++||...+..
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~-------------- 149 (249)
T PRK12825 84 RIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPG-------------- 149 (249)
T ss_pred CCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCC--------------
Confidence 68999999996544332 2234567899999999999887 45555 9999999876522
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.+|...+.+++.++.+ .+++++++|||.++|+.... .+....... .... ....+
T Consensus 150 --~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~---~~~~~~~~~---~~~~-------~~~~~ 214 (249)
T PRK12825 150 --WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEA---TIEEAREAK---DAET-------PLGRS 214 (249)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCcccc---ccchhHHhh---hccC-------CCCCC
Confidence 112367999999999999988765 58999999999999986421 111111110 0001 12238
Q ss_pred ccHHHHHHHHHHHHcCCC----CCcEEecCCCcc
Q 013226 327 QFVSDLVEGLIRLMEGDH----VGPFNLGNPGEF 356 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~----~g~~~i~~~~~~ 356 (447)
++++|+++++.+++++.. ...|+++++..+
T Consensus 215 ~~~~dva~~~~~~~~~~~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 215 GTPEDIARAVAFLCSDASDYITGQVIEVTGGVDV 248 (249)
T ss_pred cCHHHHHHHHHHHhCccccCcCCCEEEeCCCEee
Confidence 999999999999997652 238888877543
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-20 Score=173.15 Aligned_cols=216 Identities=18% Similarity=0.134 Sum_probs=148.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+|++|||||+|+||++++++|+++|++|++++|+.... +.+.... ...++.++.+|+.+.. +.++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGA-EAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999964321 1111111 1236788888987753 3458
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
|+|||+||......... +..+.+..|+.|+..+++++ ++.+. +||++||...+...
T Consensus 80 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~--------------- 144 (255)
T TIGR01963 80 DILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVAS--------------- 144 (255)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCC---------------
Confidence 99999999754322211 23457889999988888876 45555 89999997654321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeE-------EecCCC
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT-------VYGDGK 321 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 321 (447)
.....|+.+|...+.+++.++.+ .+++++++||+.+++|.. ...+.......... ......
T Consensus 145 -~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (255)
T TIGR01963 145 -PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLV--------EKQIADQAKTRGIPEEQVIREVMLPGQ 215 (255)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHH--------HHHHHhhhcccCCCchHHHHHHHHccC
Confidence 11267999999999999888765 389999999999998742 11111111111110 011223
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCc
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGE 355 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~ 355 (447)
..+++++++|+|++++.++++.. .| .|++.++..
T Consensus 216 ~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g~~ 253 (255)
T TIGR01963 216 PTKRFVTVDEVAETALFLASDAAAGITGQAIVLDGGWT 253 (255)
T ss_pred ccccCcCHHHHHHHHHHHcCccccCccceEEEEcCccc
Confidence 45679999999999999997642 23 688876543
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=171.42 Aligned_cols=213 Identities=16% Similarity=0.140 Sum_probs=145.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.. .......+ ...++.++.+|+.+.. +
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL--VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH--HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999998632 11111111 1235677888887642 2
Q ss_pred cCCCEEEEeccCCCC-CCc----ccChHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASP-VHY----KFNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||.... ... ..+....+++|+.++..+++. +++.+. +||++||...++.
T Consensus 83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------ 150 (260)
T PRK12823 83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI------------ 150 (260)
T ss_pred CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC------------
Confidence 368999999985321 111 112445788999988766554 445554 8999999876531
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCc---------cCCCchHHHHHHHHHhCCCeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMC---------IDDGRVVSNFVAQALRKEPLT 315 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~---------~~~~~~~~~~~~~~~~~~~~~ 315 (447)
....|+.+|++.+.+++.++.++ ++++++++||++++|... .....+...++.......++.
T Consensus 151 ------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T PRK12823 151 ------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMK 224 (260)
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCcc
Confidence 12569999999999999998765 899999999999997310 001122334444444433332
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
-+.+++|+|+++++++.... .| .+++.++
T Consensus 225 ---------~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 257 (260)
T PRK12823 225 ---------RYGTIDEQVAAILFLASDEASYITGTVLPVGGG 257 (260)
T ss_pred ---------cCCCHHHHHHHHHHHcCcccccccCcEEeecCC
Confidence 24578999999999987642 34 6777654
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=173.18 Aligned_cols=232 Identities=17% Similarity=0.080 Sum_probs=159.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc---ccCCCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH---HFGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~------------~ 177 (447)
+++|+++||||+|+||+++++.|+++|++|++++|+.......... .....++.++.+|+.++. +
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999999999999864322111111 111246778888987653 1
Q ss_pred cCCCEEEEeccCCCCC-Ccc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPV-HYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~-~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||..... ... ......+++|+.++.++++++.+ .+. +||++||...+..
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~------------ 152 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNT------------ 152 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCC------------
Confidence 2689999999964321 111 12456789999999999887654 233 8999999876421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
..+.+.|+.+|++.|.+++.++.+. +++++++|||.+.++....... ............+ ..
T Consensus 153 ----~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~ 217 (276)
T PRK05875 153 ----HRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITE--SPELSADYRACTP---------LP 217 (276)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccccc--CHHHHHHHHcCCC---------CC
Confidence 1224789999999999999998764 6999999999988764321100 0111111121111 12
Q ss_pred ccccHHHHHHHHHHHHcCCCC----CcEEecCCCcc----CHHHHHHHHHHHhCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDHV----GPFNLGNPGEF----TMLELAEVVQEIIDR 371 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~~----g~~~i~~~~~~----s~~el~~~i~~~~g~ 371 (447)
.+.+++|+|++++++++++.. ..+++.++..+ +..|+++.+.+..+.
T Consensus 218 ~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 272 (276)
T PRK05875 218 RVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADGL 272 (276)
T ss_pred CCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHHH
Confidence 367899999999999987542 37888887765 777777777665543
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=175.14 Aligned_cols=217 Identities=15% Similarity=0.074 Sum_probs=154.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEecccccccc------------cC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPIL------------LE 179 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~------------~~ 179 (447)
++++++|||||+||||++++++|+++|++|++++|......+...... ...++.++.+|+.+... .+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999986432221111111 12357789999977521 25
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCC-------CeEEEEeCccccCCCCCCCCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVG-------ARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g-------~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+|+||||||........ ......+++|+.|+.++++++ .+.+ .++|++||.+.+...
T Consensus 84 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------- 155 (287)
T PRK06194 84 VHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP-------- 155 (287)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC--------
Confidence 89999999986543322 224457899999999977773 3332 379999998765321
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh-----CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL-----GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
.....|+.+|++.+.+++.++.++ ++++.++.||.+..+- .....+++..++++
T Consensus 156 --------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~-------------~~~~~~~~~~~~~~ 214 (287)
T PRK06194 156 --------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGI-------------WQSERNRPADLANT 214 (287)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCcc-------------ccccccCchhcccC
Confidence 123679999999999999988764 3667777776665432 12333455666677
Q ss_pred CCeeEccccHHHHHHHHHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRN 372 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~ 372 (447)
+.+.+++++++|++..+.... .++..|+++.+.+.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~--------------~~s~~dva~~i~~~~~~~ 253 (287)
T PRK06194 215 APPTRSQLIAQAMSQKAVGSG--------------KVTAEEVAQLVFDAIRAG 253 (287)
T ss_pred ccccchhhHHHHHHHhhhhcc--------------CCCHHHHHHHHHHHHHcC
Confidence 778889999999988764321 278999999999877544
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-20 Score=175.31 Aligned_cols=219 Identities=11% Similarity=0.020 Sum_probs=147.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc------------cCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL------------LEVD 181 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------------~~~d 181 (447)
.+|+|+||||+|+||++++++|+++|++|++++|+.... +.+... ...++..+.+|+.+... .++|
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~-~~l~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d 80 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAAR-ADFEAL-HPDRALARLLDVTDFDAIDAVVADAEATFGPID 80 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHH-HHHHhh-cCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 467899999999999999999999999999999864322 111111 12357778888876531 3589
Q ss_pred EEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 182 QIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+||||||.......... ....+++|+.|+.++++++. +.+. +||++||...+.. .
T Consensus 81 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~----------------~ 144 (277)
T PRK06180 81 VLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLIT----------------M 144 (277)
T ss_pred EEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCC----------------C
Confidence 99999997543332222 34578999999999999853 3344 8999999764421 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCC---CchHHHH---HHHHHhCCCeEEecCCCee
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDD---GRVVSNF---VAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~ 323 (447)
.+...|+.+|+..|.+++.++.+ .|++++++|||.+.++...... ...+..+ ........ .. . ..
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~---~~ 218 (277)
T PRK06180 145 PGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAR-EA--K---SG 218 (277)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHH-Hh--h---cc
Confidence 12378999999999999998765 4899999999999876421100 0111111 11111000 00 0 11
Q ss_pred EccccHHHHHHHHHHHHcCCCCCcEEecCCCcc
Q 013226 324 RSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~~g~~~i~~~~~~ 356 (447)
..+..++|+|++++.+++++.....++.+++..
T Consensus 219 ~~~~~~~dva~~~~~~l~~~~~~~~~~~g~~~~ 251 (277)
T PRK06180 219 KQPGDPAKAAQAILAAVESDEPPLHLLLGSDAL 251 (277)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCeeEeccHHHH
Confidence 235789999999999999877665555554443
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-19 Score=171.97 Aligned_cols=232 Identities=15% Similarity=0.054 Sum_probs=155.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+ ....+ ...++.++.+|+.+.. +.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~-~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQ-AVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 578899999999999999999999999999999986433221 11111 1235778889987653 23
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCC--CeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.+|+||||||......... .....+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~-------------- 148 (275)
T PRK05876 83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV-------------- 148 (275)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc--------------
Confidence 5899999999754333322 244578999999999998864 343 3899999987552
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+..+...|+.+|+..+.+.+.++.+ .|+++++++||.+.++.... ..................+......+
T Consensus 149 --~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (275)
T PRK05876 149 --PNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVAN----SERIRGAACAQSSTTGSPGPLPLQDD 222 (275)
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccc----hhhhcCcccccccccccccccccccc
Confidence 2223478999999988777777654 48999999999998764210 00000000001111112222233467
Q ss_pred cccHHHHHHHHHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHh
Q 013226 326 FQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEII 369 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~ 369 (447)
+++++|+|++++.++.++. .|.+. .+..+.++.+...+..
T Consensus 223 ~~~~~dva~~~~~ai~~~~--~~~~~--~~~~~~~~~~~~~~~~ 262 (275)
T PRK05876 223 NLGVDDIAQLTADAILANR--LYVLP--HAASRASIRRRFERID 262 (275)
T ss_pred CCCHHHHHHHHHHHHHcCC--eEEec--ChhhHHHHHHHHHHHH
Confidence 8999999999999998654 34443 3455566665555544
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=174.14 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=151.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccc---ccccCCCceEEEeccccccc-----------ccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL---IHHFGNPRFELIRHDVVEPI-----------LLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~---~~~~~~~~v~~~~~D~~~~~-----------~~~ 179 (447)
++++++||||+|+||+++++.|+++|++|++++|+........ .......++.++.+|+.++. +.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 5678999999999999999999999999999998643222111 11111246888899997753 235
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~ 249 (447)
+|+||||||......... ...+.+++|+.++.++++++ ++.+. +||++||.. .++.
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~-------------- 147 (280)
T PRK06914 82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGF-------------- 147 (280)
T ss_pred eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCC--------------
Confidence 899999999765432222 24457889999998888875 55555 899999975 3332
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHh---hhCCcEEEEeeccccCCCCccC---------CCchHHHHHHHHHhCCCeEEe
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHR---GLGIEARIARIFNTYGPRMCID---------DGRVVSNFVAQALRKEPLTVY 317 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~---~~~i~~~ivRp~~i~Gp~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 317 (447)
.+...|+.+|+..+.+++.++. ..+++++++|||.++++..... ........+........
T Consensus 148 ---~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 220 (280)
T PRK06914 148 ---PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHIN---- 220 (280)
T ss_pred ---CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHHh----
Confidence 1237899999999999999873 4599999999999988742210 00111111111111000
Q ss_pred cCCCeeEccccHHHHHHHHHHHHcCCCCC-cEEecCCCccCHH
Q 013226 318 GDGKQTRSFQFVSDLVEGLIRLMEGDHVG-PFNLGNPGEFTML 359 (447)
Q Consensus 318 ~~~~~~~~~i~v~D~a~ai~~~l~~~~~g-~~~i~~~~~~s~~ 359 (447)
.....+++++|+|++++.+++++..+ .|+++++..+++.
T Consensus 221 ---~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 221 ---SGSDTFGNPIDVANLIVEIAESKRPKLRYPIGKGVKLMIL 260 (280)
T ss_pred ---hhhhccCCHHHHHHHHHHHHcCCCCCcccccCCchHHHHH
Confidence 01234789999999999999987654 6777766665544
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-20 Score=174.82 Aligned_cols=220 Identities=16% Similarity=0.139 Sum_probs=152.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+.+++++||||+|+||.++++.|+++|++|++++|+..... .+.... ...+.++.+|+.+.. +..+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARAR-LAALEI-GPAAIAVSLDVTRQDSIDRIVAAAVERFGGI 81 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH-HHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999999999999999999999999998644221 111111 235778888987652 2358
Q ss_pred CEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC------CCeEEEEeCcc-ccCCCCCCCCCCCcCCCC
Q 013226 181 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV------GARFLLTSTSE-VYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~------g~r~v~~SS~~-v~g~~~~~~~~e~~~~~~ 249 (447)
|+||||||........ .+....+++|+.++.++++++... +.+||++||.. .++.
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------- 147 (257)
T PRK07067 82 DILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGE-------------- 147 (257)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCC--------------
Confidence 9999999975432221 235568999999999999987542 24899999965 3322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHh---CCCeEEecCCCee
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALR---KEPLTVYGDGKQT 323 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 323 (447)
.+...|+.+|+..+.+++.++.+ .++++++++||.++++..... ...+..... +.....++.....
T Consensus 148 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (257)
T PRK07067 148 ---ALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQV-----DALFARYENRPPGEKKRLVGEAVPL 219 (257)
T ss_pred ---CCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhh-----hhhhhhccCCCHHHHHHHHhhcCCC
Confidence 13378999999999999998764 589999999999999753110 000000000 0000112222334
Q ss_pred EccccHHHHHHHHHHHHcCCC----CCcEEecCCCcc
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH----VGPFNLGNPGEF 356 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~----~g~~~i~~~~~~ 356 (447)
..+.+++|+|+++++++..+. ..+|++.++..+
T Consensus 220 ~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~~~ 256 (257)
T PRK07067 220 GRMGVPDDLTGMALFLASADADYIVAQTYNVDGGNWM 256 (257)
T ss_pred CCccCHHHHHHHHHHHhCcccccccCcEEeecCCEeC
Confidence 578999999999999998653 248888877554
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=168.38 Aligned_cols=215 Identities=18% Similarity=0.104 Sum_probs=149.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc------------ccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+++|+|+||||+|+||.+++++|+++|++|++++|+............ ...++.++.+|+.+.. +..
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999996432211111110 1235788899987752 136
Q ss_pred CCEEEEeccCCCCCCc----ccChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+|||+||....... ..+..+.++.|+.++.++++++. +.+. +||++||...++.
T Consensus 84 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~--------------- 148 (251)
T PRK12826 84 LDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV--------------- 148 (251)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc---------------
Confidence 8999999987654222 12345689999999999998874 3444 8999999876511
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
+......|+.+|..++.+++.++.+ .+++++++||+.++||......... +........++ ..++
T Consensus 149 ~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~ 216 (251)
T PRK12826 149 GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQ---WAEAIAAAIPL---------GRLG 216 (251)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchH---HHHHHHhcCCC---------CCCc
Confidence 1122367999999999999998765 4899999999999998642211111 11112222111 2478
Q ss_pred cHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 328 FVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
+++|+|+++..++.++. .| .|++.++.
T Consensus 217 ~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 217 EPEDIAAAVLFLASDEARYITGQTLPVDGGA 247 (251)
T ss_pred CHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 99999999999887643 23 77776543
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=170.61 Aligned_cols=216 Identities=15% Similarity=0.078 Sum_probs=145.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++++|+||||+|+||++++++|+++|++|++++|+...... ..... ...++.++.+|+.+.. ..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAA-AAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 356899999999999999999999999999999997543221 11111 1246788899987653 13
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......... .....+++|+.++.++++. +++.+. +||++||...+..
T Consensus 81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~-------------- 146 (258)
T PRK12429 81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVG-------------- 146 (258)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccC--------------
Confidence 5899999999754433222 2345788999996555554 445555 9999999864321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeE-------EecC
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT-------VYGD 319 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 319 (447)
....+.|+.+|.+.+.+++.++.+ .+++++++|||.+++|... ..+........+. .+..
T Consensus 147 --~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 216 (258)
T PRK12429 147 --SAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVR--------KQIPDLAKERGISEEEVLEDVLLP 216 (258)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhh--------hhhhhhccccCCChHHHHHHHHhc
Confidence 112378999999999999888765 4899999999999987531 1111110000000 0111
Q ss_pred CCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
......+++++|+|++++.++.+.. .| .|++.++
T Consensus 217 ~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 217 LVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred cCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 1233579999999999999987643 23 6666654
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-19 Score=168.01 Aligned_cols=225 Identities=15% Similarity=0.094 Sum_probs=157.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc------------cCCCE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL------------LEVDQ 182 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------------~~~d~ 182 (447)
+++++||||+|+||++++++|+++|++|++++|+..... .+.......++.++.+|+.+... .++|+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALA-AFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV 80 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 568999999999999999999999999999998643221 11111223467888888866531 25899
Q ss_pred EEEeccCCCCCCccc-C---hHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 183 IYHLACPASPVHYKF-N---PVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~-~---~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
|||+||......... + ....+.+|+.++.++++++. +.+. +||++||...+...
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------------- 143 (257)
T PRK07074 81 LVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAAL----------------- 143 (257)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCC-----------------
Confidence 999999754332222 1 23457899999999888873 3444 89999996532110
Q ss_pred CCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
....|+.+|++.+.+++.++.++ ++++.+++||.++++........ ...+....... ....+|++++
T Consensus 144 ~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~ 213 (257)
T PRK07074 144 GHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAA-NPQVFEELKKW---------YPLQDFATPD 213 (257)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhccccc-ChHHHHHHHhc---------CCCCCCCCHH
Confidence 11469999999999999998654 79999999999998753211000 11222222111 1235789999
Q ss_pred HHHHHHHHHHcCCC---CC-cEEecCCCccCHHHHHHHHHH
Q 013226 331 DLVEGLIRLMEGDH---VG-PFNLGNPGEFTMLELAEVVQE 367 (447)
Q Consensus 331 D~a~ai~~~l~~~~---~g-~~~i~~~~~~s~~el~~~i~~ 367 (447)
|++++++.++.+.. .| .+++.++......|+++.+.+
T Consensus 214 d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 214 DVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred HHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhcc
Confidence 99999999997532 25 667777778889999988764
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=170.39 Aligned_cols=216 Identities=15% Similarity=0.126 Sum_probs=146.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+.+|+++||||+|+||++++++|+++|++|++++|+..... ...... ...++.++.+|+++.. +
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCE-ELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEAL 85 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 356689999999999999999999999999999988643211 111111 1235778888987653 2
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|+||||||........ ......+++|+.++.++++++.+ .+. +||++||...+...
T Consensus 86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~------------ 153 (274)
T PRK07775 86 GEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQR------------ 153 (274)
T ss_pred CCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCC------------
Confidence 3589999999975432222 12445689999999999888643 333 89999998765321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
.....|+.+|++.|.+++.++.+. |++++++|||.+.++.........+..++..... ++ ......
T Consensus 154 ----~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~ 222 (274)
T PRK07775 154 ----PHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAK------WG-QARHDY 222 (274)
T ss_pred ----CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHH------hc-cccccc
Confidence 123679999999999999998764 8999999998876542110011111222221111 11 112346
Q ss_pred cccHHHHHHHHHHHHcCCCCC-cEEec
Q 013226 326 FQFVSDLVEGLIRLMEGDHVG-PFNLG 351 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~~g-~~~i~ 351 (447)
+++++|+|++++.+++++..+ +||+.
T Consensus 223 ~~~~~dva~a~~~~~~~~~~~~~~~~~ 249 (274)
T PRK07775 223 FLRASDLARAITFVAETPRGAHVVNME 249 (274)
T ss_pred ccCHHHHHHHHHHHhcCCCCCCeeEEe
Confidence 899999999999999876543 66764
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=182.35 Aligned_cols=225 Identities=15% Similarity=0.095 Sum_probs=152.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc---c-----cc--CCCceEEEecccccc-----c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI---H-----HF--GNPRFELIRHDVVEP-----I 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~---~-----~~--~~~~v~~~~~D~~~~-----~ 176 (447)
...|++|+||||+|+||++++++|+++|++|++++|+......... . .. ...++.++.+|+.+. .
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 3477899999999999999999999999999999997543221100 0 00 113578888998765 3
Q ss_pred ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR 255 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~ 255 (447)
+.++|+||||||.... ...+....+++|+.|+.+++++|++.++ |||++||.+++... ..+. .....
T Consensus 157 LggiDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g----~p~~------~~~sk 224 (576)
T PLN03209 157 LGNASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVG----FPAA------ILNLF 224 (576)
T ss_pred hcCCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccC----cccc------chhhH
Confidence 5689999999986431 1123456788999999999999999987 99999998753110 0001 11223
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHH
Q 013226 256 SCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a 335 (447)
..|...|..+|..+. +.|+++++||||.++++...... ...+............+..+|+|++
T Consensus 225 ~~~~~~KraaE~~L~----~sGIrvTIVRPG~L~tp~d~~~~-------------t~~v~~~~~d~~~gr~isreDVA~v 287 (576)
T PLN03209 225 WGVLCWKRKAEEALI----ASGLPYTIVRPGGMERPTDAYKE-------------THNLTLSEEDTLFGGQVSNLQVAEL 287 (576)
T ss_pred HHHHHHHHHHHHHHH----HcCCCEEEEECCeecCCcccccc-------------ccceeeccccccCCCccCHHHHHHH
Confidence 567788888887764 36999999999999987532100 0111111111111235889999999
Q ss_pred HHHHHcCCC---CCcEEecCCCc---cCHHHHHHHH
Q 013226 336 LIRLMEGDH---VGPFNLGNPGE---FTMLELAEVV 365 (447)
Q Consensus 336 i~~~l~~~~---~g~~~i~~~~~---~s~~el~~~i 365 (447)
+++++.++. ..+|.+.++.. .++.|+++.|
T Consensus 288 VvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 288 MACMAKNRRLSYCKVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHcCchhccceEEEEEeCCCCCCCCHHHHHHhc
Confidence 999998664 24888887653 4455555444
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=164.24 Aligned_cols=202 Identities=15% Similarity=0.117 Sum_probs=145.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc------------cCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL------------LEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------------~~~ 180 (447)
.++|.++|||||++||.++++.|.+.|++|++..|+.+. -+.+...+....+..+..|++|... .++
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~dr-L~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~i 82 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREER-LEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRI 82 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHH-HHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcc
Confidence 467899999999999999999999999999999997442 2333333333568889999988742 359
Q ss_pred CEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCC
Q 013226 181 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~ 250 (447)
|++|||||........ ++.+.++++|+.|..++.+++. +.+. ++|.+||.+ .|
T Consensus 83 DiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~----------------- 145 (246)
T COG4221 83 DILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY----------------- 145 (246)
T ss_pred cEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc-----------------
Confidence 9999999986543322 2366799999999998888753 3444 999999987 22
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCc-cCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMC-IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
+....+.|+.+|+....+...++.+. +++++.|.||.+-..... ..... -........ ....+
T Consensus 146 ~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g-~~~~~~~~y------------~~~~~ 212 (246)
T COG4221 146 PYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEG-DDERADKVY------------KGGTA 212 (246)
T ss_pred cCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCc-hhhhHHHHh------------ccCCC
Confidence 22223789999999999999998764 899999999887443211 00000 001111111 11347
Q ss_pred ccHHHHHHHHHHHHcCCCC
Q 013226 327 QFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~~ 345 (447)
+..+|+|+++.++++.+..
T Consensus 213 l~p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 213 LTPEDIAEAVLFAATQPQH 231 (246)
T ss_pred CCHHHHHHHHHHHHhCCCc
Confidence 8899999999999998754
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-19 Score=161.40 Aligned_cols=177 Identities=29% Similarity=0.421 Sum_probs=133.8
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccCCCC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACPASP 192 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~~~~ 192 (447)
|+|+||||++|+.++++|+++|++|+++.|++.+..+ ..+++++.+|+.+. ++.++|+|||+++....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 7999999999999999999999999999997543322 45889999998776 46789999999974321
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHH
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD 271 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~ 271 (447)
+...+.+++++++++++ |+|++||.++|.........+. .. ....|...|..+|++++
T Consensus 74 -------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~e~~~~- 132 (183)
T PF13460_consen 74 -------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDED------KP-IFPEYARDKREAEEALR- 132 (183)
T ss_dssp -------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGT------CG-GGHHHHHHHHHHHHHHH-
T ss_pred -------------cccccccccccccccccccceeeeccccCCCCCccccccc------cc-chhhhHHHHHHHHHHHH-
Confidence 27888899999999998 9999999999875433211111 11 11578899988887774
Q ss_pred HHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcC
Q 013226 272 YHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 272 ~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
+.+++++++||+.+||+... ...+ ....+....++|+++|+|++++.++++
T Consensus 133 ---~~~~~~~ivrp~~~~~~~~~--~~~~---------------~~~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 133 ---ESGLNWTIVRPGWIYGNPSR--SYRL---------------IKEGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp ---HSTSEEEEEEESEEEBTTSS--SEEE---------------ESSTSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred ---hcCCCEEEEECcEeEeCCCc--ceeE---------------EeccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 35999999999999998632 1111 011233445899999999999999874
|
... |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=168.43 Aligned_cols=212 Identities=20% Similarity=0.177 Sum_probs=150.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------L 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------~ 178 (447)
+++|+++||||+|+||.+++++|+++|++|++++|..... +.+.... ....+.++.+|+++... .
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGA-ERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999864322 1111111 12256778899877632 3
Q ss_pred CCCEEEEeccCCCCC---Cc-c---cChHHHHHHHHHHHHHHHHHHHHC----C-CeEEEEeCccccCCCCCCCCCCCcC
Q 013226 179 EVDQIYHLACPASPV---HY-K---FNPVKTIKTNVVGTLNMLGLAKRV----G-ARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~---~~-~---~~~~~~~~~Nv~gt~~ll~aa~~~----g-~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
.+|+||||||..... .. . ....+.+++|+.++.++++++.+. + .+||++||...|..
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 151 (250)
T PRK07774 83 GIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWLY----------- 151 (250)
T ss_pred CCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccCC-----------
Confidence 589999999975321 11 1 224457899999999999987653 2 38999999876531
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
.+.|+.+|++.|.+++.+++++ ++++++++||.+..+..... ....+.....++.+..
T Consensus 152 --------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~---~~~~~~~~~~~~~~~~-------- 212 (250)
T PRK07774 152 --------SNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTV---TPKEFVADMVKGIPLS-------- 212 (250)
T ss_pred --------ccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCcccccc---CCHHHHHHHHhcCCCC--------
Confidence 2679999999999999998764 79999999999887753211 1122333344433322
Q ss_pred EccccHHHHHHHHHHHHcCCC---C-CcEEecCCCcc
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH---V-GPFNLGNPGEF 356 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~---~-g~~~i~~~~~~ 356 (447)
-+.+++|+|++++.++.... . ..|++.++..+
T Consensus 213 -~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g~~~ 248 (250)
T PRK07774 213 -RMGTPEDLVGMCLFLLSDEASWITGQIFNVDGGQII 248 (250)
T ss_pred -CCcCHHHHHHHHHHHhChhhhCcCCCEEEECCCeec
Confidence 14578999999999987642 2 37888877654
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=169.75 Aligned_cols=207 Identities=17% Similarity=0.103 Sum_probs=142.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc------------cCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL------------LEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------------~~~ 180 (447)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+.........++.++.+|+.+... .++
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 82 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL 82 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46889999999999999999999999999999998643222111111113457889999977531 368
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccc-cCCCCCCCCCCCcCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEV-YGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v-~g~~~~~~~~e~~~~~~~ 250 (447)
|+||||||......... ...+.+.+|+.++.++.+++ ++.+. +||++||... ++.+
T Consensus 83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~-------------- 148 (252)
T PRK06138 83 DVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGR-------------- 148 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCCC--------------
Confidence 99999999754333222 24457899999997776654 44555 8999999864 3321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCc-hHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGR-VVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
....|+.+|.+.+.+++.++.++ +++++++|||.++++........ .....+....... .....+
T Consensus 149 ---~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 217 (252)
T PRK06138 149 ---GRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRAR--------HPMNRF 217 (252)
T ss_pred ---CccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhc--------CCCCCC
Confidence 13679999999999999998765 89999999999998753110000 0011111111110 011237
Q ss_pred ccHHHHHHHHHHHHcCCC
Q 013226 327 QFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~ 344 (447)
++++|++++++.++.++.
T Consensus 218 ~~~~d~a~~~~~l~~~~~ 235 (252)
T PRK06138 218 GTAEEVAQAALFLASDES 235 (252)
T ss_pred cCHHHHHHHHHHHcCchh
Confidence 899999999999998754
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=167.40 Aligned_cols=218 Identities=16% Similarity=0.093 Sum_probs=151.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC--CCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG--NPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... .....+. ..++.++.+|+.+.. +
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLA-AAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999998643221 1111111 235778888987753 2
Q ss_pred cCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHHC----CC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~~----g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
..+|+||||||.......... ..+.+.+|+.++.++++++.+. +. +||++||.....
T Consensus 86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~-------------- 151 (255)
T PRK07523 86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL-------------- 151 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc--------------
Confidence 358999999997644333222 3557889999999999987643 44 899999975431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.+|.+.+.+++.++.+ .|+++++++||.+.++........ ..+........+ ...
T Consensus 152 --~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~--~~~~~~~~~~~~---------~~~ 218 (255)
T PRK07523 152 --ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVAD--PEFSAWLEKRTP---------AGR 218 (255)
T ss_pred --CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccC--HHHHHHHHhcCC---------CCC
Confidence 1223478999999999999998763 589999999999998753110000 111111211111 123
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCCCccC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFT 357 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s 357 (447)
+..++|+|+++++++.++. .| .+++.++..+|
T Consensus 219 ~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 219 WGKVEELVGACVFLASDASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred CcCHHHHHHHHHHHcCchhcCccCcEEEECCCeecc
Confidence 6789999999999997643 24 67777665443
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=168.18 Aligned_cols=218 Identities=15% Similarity=0.003 Sum_probs=147.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++++|+||||+|+||++++++|+++|++|+++.|+............ ...++.++.+|+.+.. +.
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 457899999999999999999999999999887764322111111111 1124667788886653 24
Q ss_pred CCCEEEEeccCCCCCCccc-C---hHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF-N---PVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~-~---~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
++|+||||||......... + ....+++|+.++.++++++.+. +.+||++||...+. +
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 147 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR----------------P 147 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC----------------C
Confidence 6899999999744332222 1 2457899999999999887653 23899999987653 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
..+.+.|+.+|+..|.+++.+++++ ++++.+++||.+.++..... .............. .. ....++++
T Consensus 148 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~-~~~~~~~~~~~~~~--~~------~~~~~~~~ 218 (252)
T PRK06077 148 AYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESL-FKVLGMSEKEFAEK--FT------LMGKILDP 218 (252)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhh-hhcccccHHHHHHh--cC------cCCCCCCH
Confidence 3334789999999999999998765 78999999999987642100 00000000011110 11 12358999
Q ss_pred HHHHHHHHHHHcCCC--CCcEEecCCCc
Q 013226 330 SDLVEGLIRLMEGDH--VGPFNLGNPGE 355 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~--~g~~~i~~~~~ 355 (447)
+|+|++++.+++... .+.|++.++..
T Consensus 219 ~dva~~~~~~~~~~~~~g~~~~i~~g~~ 246 (252)
T PRK06077 219 EEVAEFVAAILKIESITGQVFVLDSGES 246 (252)
T ss_pred HHHHHHHHHHhCccccCCCeEEecCCee
Confidence 999999999997553 34888887654
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=170.62 Aligned_cols=216 Identities=15% Similarity=0.127 Sum_probs=148.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------L 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------~ 178 (447)
+++++++||||+||||++++++|+++|++|++++|+.....+.+...+ ...++.++.+|+++... .
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 567899999999999999999999999999999886432222111111 12356788889877531 3
Q ss_pred CCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC
Q 013226 179 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR 255 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~ 255 (447)
++|+||||||.... ...++...+++|+.++.++++++.+. +.++|++||......... + +....
T Consensus 84 ~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~----~-------~~~~~ 150 (248)
T PRK07806 84 GLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPTV----K-------TMPEY 150 (248)
T ss_pred CCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCccc----c-------CCccc
Confidence 58999999986422 22345567889999999999999864 238999999653211110 1 11114
Q ss_pred ChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHH----HHhCCCeEEecCCCeeEcccc
Q 013226 256 SCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQ----ALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~ 328 (447)
..|+.+|+++|.+++.++.+ .++++++++|+.+-+|.. ..+... ....... ....+++
T Consensus 151 ~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~--------~~~~~~~~~~~~~~~~~-------~~~~~~~ 215 (248)
T PRK07806 151 EPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVT--------ATLLNRLNPGAIEARRE-------AAGKLYT 215 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchh--------hhhhccCCHHHHHHHHh-------hhcccCC
Confidence 68999999999999998765 489999999987766531 111100 0000000 1136899
Q ss_pred HHHHHHHHHHHHcCCC-CC-cEEecCCCcc
Q 013226 329 VSDLVEGLIRLMEGDH-VG-PFNLGNPGEF 356 (447)
Q Consensus 329 v~D~a~ai~~~l~~~~-~g-~~~i~~~~~~ 356 (447)
++|+|++++.+++... .| +|++++++.+
T Consensus 216 ~~dva~~~~~l~~~~~~~g~~~~i~~~~~~ 245 (248)
T PRK07806 216 VSEFAAEVARAVTAPVPSGHIEYVGGADYF 245 (248)
T ss_pred HHHHHHHHHHHhhccccCccEEEecCccce
Confidence 9999999999998663 34 7888877643
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-19 Score=165.86 Aligned_cols=212 Identities=16% Similarity=0.130 Sum_probs=147.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++++++||||+|+||.+++++|+++|++|+++.++.+...++....+ ...++.++.+|+.+.. +.
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG 83 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999877654332222221111 1235788999997753 13
Q ss_pred CCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
.+|+||||||........ ....+.+++|+.++.++++++.. .+. ++|++||...+..
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 149 (247)
T PRK12935 84 KVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAG-------------- 149 (247)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCC--------------
Confidence 489999999976543322 23566899999999999998864 233 8999999753321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
..+...|+.+|.+.+.+++.++.+. ++++++++||.+.++... ............+. ....+
T Consensus 150 --~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~----~~~~~~~~~~~~~~---------~~~~~ 214 (247)
T PRK12935 150 --GFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVA----EVPEEVRQKIVAKI---------PKKRF 214 (247)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhh----hccHHHHHHHHHhC---------CCCCC
Confidence 1123679999999999998887654 899999999999876421 11111112222211 12457
Q ss_pred ccHHHHHHHHHHHHcCC--CC-CcEEecCC
Q 013226 327 QFVSDLVEGLIRLMEGD--HV-GPFNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~--~~-g~~~i~~~ 353 (447)
.+++|++++++.+++.. .. ..|++.++
T Consensus 215 ~~~edva~~~~~~~~~~~~~~g~~~~i~~g 244 (247)
T PRK12935 215 GQADEIAKGVVYLCRDGAYITGQQLNINGG 244 (247)
T ss_pred cCHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence 99999999999998764 22 48888765
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-19 Score=169.74 Aligned_cols=218 Identities=14% Similarity=0.101 Sum_probs=151.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc-ccccccc--CCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK-DNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~-~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
.+++|++|||||+|+||++++++|+++|++|+++.++..... +...... ...++.++.+|+.+..
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999998876433211 1111111 1235778889987652
Q ss_pred ccCCCEEEEeccCCCCCC-c----ccChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 177 LLEVDQIYHLACPASPVH-Y----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+.++|+||||||...... . .++....+++|+.|+.++++++.+. +.+||++||...|...
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~------------ 199 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPS------------ 199 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCC------------
Confidence 236999999999643211 1 1235668999999999999998753 3499999998876421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
.....|+.||++.+.+++.++.+ .|+++++|+||.+.+|..... ......+.......+ ...
T Consensus 200 ----~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~--~~~~~~~~~~~~~~p---------~~r 264 (300)
T PRK06128 200 ----PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSG--GQPPEKIPDFGSETP---------MKR 264 (300)
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccC--CCCHHHHHHHhcCCC---------CCC
Confidence 12257999999999999999876 489999999999999853211 111222222222111 123
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCCCcc
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEF 356 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~ 356 (447)
+...+|+|.++++++.+.. .| .+++.++..+
T Consensus 265 ~~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 265 PGQPVEMAPLYVLLASQESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred CcCHHHHHHHHHHHhCccccCccCcEEeeCCCEeC
Confidence 6688999999999987643 24 7777766543
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=164.95 Aligned_cols=213 Identities=15% Similarity=0.072 Sum_probs=147.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
.|+++||||+|+||+++++.|+++|++|++++|+............ ...++.++.+|+.+.. ...+
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI 81 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999999999999986432211111111 1236788899998753 1368
Q ss_pred CEEEEeccCCCCCC--c----ccChHHHHHHHHHHHHHHHHHHHHC-----C-----C-eEEEEeCccccCCCCCCCCCC
Q 013226 181 DQIYHLACPASPVH--Y----KFNPVKTIKTNVVGTLNMLGLAKRV-----G-----A-RFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 181 d~Vih~Ag~~~~~~--~----~~~~~~~~~~Nv~gt~~ll~aa~~~-----g-----~-r~v~~SS~~v~g~~~~~~~~e 243 (447)
|+||||||...... + .....+.+++|+.++.++++++.+. + . +||++||...+..
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 153 (256)
T PRK12745 82 DCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMV-------- 153 (256)
T ss_pred CEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccC--------
Confidence 99999999753221 1 1234567899999999998887442 1 3 6999999774321
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
....+.|+.+|++.|.+++.++.+ .++++++++||.++++.... +...+.. .+.....+
T Consensus 154 --------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~----~~~~~~~-~~~~~~~~----- 215 (256)
T PRK12745 154 --------SPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAP----VTAKYDA-LIAKGLVP----- 215 (256)
T ss_pred --------CCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccc----cchhHHh-hhhhcCCC-----
Confidence 112367999999999999999864 58999999999999875321 1122211 11111111
Q ss_pred CeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCc
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGE 355 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~ 355 (447)
...+.+++|+++++..++.... .| .|++.++..
T Consensus 216 --~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg~~ 252 (256)
T PRK12745 216 --MPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGGLS 252 (256)
T ss_pred --cCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCCee
Confidence 2347799999999999887542 23 788876644
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-19 Score=167.38 Aligned_cols=204 Identities=14% Similarity=0.115 Sum_probs=142.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC--CCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG--NPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~------------~~ 178 (447)
+++|+|+||||+|+||++++++|+++|++|++++|+.... +.+..... ..++.++..|+++.. +.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERL-DEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999864322 22221111 235788999987653 23
Q ss_pred CCCEEEEeccCCCC-CCc----ccChHHHHHHHHHHHHHHHHHHHHC----CCeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASP-VHY----KFNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~aa~~~----g~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||.... ... .......+++|+.++..+++++.+. +.+||++||...+.
T Consensus 82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~--------------- 146 (258)
T PRK07890 82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH--------------- 146 (258)
T ss_pred CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc---------------
Confidence 68999999997433 111 1234568999999999999988652 23899999976432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCC-------chHHHHHHHHHhCCCeEEecC
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDG-------RVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 319 (447)
+......|+.+|...+.+++.++.+ .++++++++||.+++|....... .-...+.......
T Consensus 147 -~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 217 (258)
T PRK07890 147 -SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN-------- 217 (258)
T ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc--------
Confidence 2223468999999999999999865 48999999999999985310000 0001111111111
Q ss_pred CCeeEccccHHHHHHHHHHHHcC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
.....+.+++|++++++.++++
T Consensus 218 -~~~~~~~~~~dva~a~~~l~~~ 239 (258)
T PRK07890 218 -SDLKRLPTDDEVASAVLFLASD 239 (258)
T ss_pred -CCccccCCHHHHHHHHHHHcCH
Confidence 1112467899999999999875
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=166.97 Aligned_cols=222 Identities=18% Similarity=0.152 Sum_probs=147.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEecccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPIL------------L 178 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~------------~ 178 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... .+.... ...++.++.+|+.+... .
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQ-NVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999998643221 111111 12367888999977631 3
Q ss_pred CCCEEEEeccCCCCC--Cc----ccChHHHHHHHHHHHHHHHHHHHH----CC-CeEEEEeCcc-ccCCCCCCCCCCCcC
Q 013226 179 EVDQIYHLACPASPV--HY----KFNPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSE-VYGDPLQHPQAETYW 246 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~aa~~----~g-~r~v~~SS~~-v~g~~~~~~~~e~~~ 246 (447)
++|+||||||..... .. ..+....+++|+.|+.++++++.+ .+ .++|++||.. .++.+
T Consensus 94 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~---------- 163 (280)
T PLN02253 94 TLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGL---------- 163 (280)
T ss_pred CCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCC----------
Confidence 599999999975321 11 123566899999999999887753 22 3899998876 33321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccC--CCchHHHHHHH---HHhCCCeEEec
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCID--DGRVVSNFVAQ---ALRKEPLTVYG 318 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~---~~~~~~~~~~~ 318 (447)
....|+.+|++.|.+++.++.++ ++++.+++||.+.++..... ........+.. ..... .+.
T Consensus 164 -------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l-- 233 (280)
T PLN02253 164 -------GPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKN-ANL-- 233 (280)
T ss_pred -------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcC-CCC--
Confidence 12579999999999999998764 89999999999987642110 00000111111 11110 000
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCccCH
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFTM 358 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s~ 358 (447)
....++++|+|+++++++.++. .| .+++.++...+.
T Consensus 234 ----~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG~~~~~ 273 (280)
T PLN02253 234 ----KGVELTVDDVANAVLFLASDEARYISGLNLMIDGGFTCTN 273 (280)
T ss_pred ----cCCCCCHHHHHHHHHhhcCcccccccCcEEEECCchhhcc
Confidence 0124789999999999987643 24 667766544443
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-19 Score=167.83 Aligned_cols=221 Identities=18% Similarity=0.135 Sum_probs=148.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---cccccCCCceEEEeccccccc------------ccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+++|+||||+|+||++++++|+++|++|++++|+....... +.......++.++.+|+.+.. +..
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999999864322111 111111246888999987652 246
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC-C-eEEEEeCcc-ccCCCCCCCCCCCcCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG-A-RFLLTSTSE-VYGDPLQHPQAETYWGN 248 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g-~-r~v~~SS~~-v~g~~~~~~~~e~~~~~ 248 (447)
+|+||||||......... +....+++|+.++.++++++.+ .+ . ++|++||.. .++..
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~------------ 149 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSK------------ 149 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCC------------
Confidence 899999999765433322 2455789999998877776643 44 3 899999965 33321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHH--hCCCeEEecCCCee
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQAL--RKEPLTVYGDGKQT 323 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 323 (447)
....|+.+|++.+.+++.++.+ .|+++.+++||.++++.... ..+..+..... ..+....+.+....
T Consensus 150 -----~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (259)
T PRK12384 150 -----HNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQ---SLLPQYAKKLGIKPDEVEQYYIDKVPL 221 (259)
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhh---hhhHHHHHhcCCChHHHHHHHHHhCcc
Confidence 1267999999999999988753 69999999999988765311 12222211100 00000011122234
Q ss_pred EccccHHHHHHHHHHHHcCCC---CC-cEEecCCCc
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGE 355 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~ 355 (447)
..+++++|++.+++.++.+.. .| +|++.+++.
T Consensus 222 ~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 222 KRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQV 257 (259)
T ss_pred cCCCCHHHHHHHHHHHcCcccccccCceEEEcCCEE
Confidence 568899999999999987652 24 688877653
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=154.65 Aligned_cols=295 Identities=20% Similarity=0.226 Sum_probs=214.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC-CC-eEEEEecCCCCCccccccccCCCceEEEeccccccc-----c--cCCCEEEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDR-GD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L--LEVDQIYH 185 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~-G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~--~~~d~Vih 185 (447)
.-+|||||+-|.+|..++..|..+ |. .|++-|...++ +.+.+ ..-++-.|++|.. . ..+|-+||
T Consensus 44 ~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp--~~V~~-----~GPyIy~DILD~K~L~eIVVn~RIdWL~H 116 (366)
T KOG2774|consen 44 APRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPP--ANVTD-----VGPYIYLDILDQKSLEEIVVNKRIDWLVH 116 (366)
T ss_pred CCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCc--hhhcc-----cCCchhhhhhccccHHHhhcccccceeee
Confidence 347999999999999999877665 54 56665543222 22211 2345566666543 2 24899999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTA 265 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~ 265 (447)
..+..+. .-+.+.....++|+.|..|+++.|++++.++..-|+++.||......-+ .+..-..|.+.||.||.-+
T Consensus 117 fSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPSTIGAFGPtSPRNPT----PdltIQRPRTIYGVSKVHA 191 (366)
T KOG2774|consen 117 FSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKLKVFVPSTIGAFGPTSPRNPT----PDLTIQRPRTIYGVSKVHA 191 (366)
T ss_pred HHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCeeEeecccccccCCCCCCCCC----CCeeeecCceeechhHHHH
Confidence 9875432 2234455577899999999999999999999999999999853321111 1124456789999999999
Q ss_pred HHHHHHHHhhhCCcEEEEeeccccCCCCc-cCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC
Q 013226 266 ETLTMDYHRGLGIEARIARIFNTYGPRMC-IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 266 E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~ 344 (447)
|.+-+.+...+|+++.++|.+.+...... ..........+..+++.++...+-.++....++|.+||-++++.++..+.
T Consensus 192 EL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~~~~~~~~a~~ 271 (366)
T KOG2774|consen 192 ELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMASVIQLLAADS 271 (366)
T ss_pred HHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHHHHHHHHHhCCH
Confidence 99999888889999999998876642111 01122334455667777777777777888899999999999999988664
Q ss_pred C----CcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCC---CCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHH
Q 013226 345 V----GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT---EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417 (447)
Q Consensus 345 ~----g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~---~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~ 417 (447)
. .+||++ +-.+|..|+++.+++.+. ...+.+.+.+ ..+.+...+|.+.++++..|+.++.+..-+..++..
T Consensus 272 ~~lkrr~ynvt-~~sftpee~~~~~~~~~p-~~~i~y~~~srq~iad~wp~~~dds~ar~~wh~~h~~~l~~~i~~~i~~ 349 (366)
T KOG2774|consen 272 QSLKRRTYNVT-GFSFTPEEIADAIRRVMP-GFEIDYDICTRQSIADSWPMSLDDSEARTEWHEKHSLHLLSIISTVVAV 349 (366)
T ss_pred HHhhhheeeec-eeccCHHHHHHHHHhhCC-CceeecccchhhhhhhhcccccCchhHhhHHHHhhhhhHHHHHHHHHHH
Confidence 3 499998 489999999999999873 3444454432 446677789999999999999998888888888888
Q ss_pred HHHHhc
Q 013226 418 FRHRIF 423 (447)
Q Consensus 418 ~~~~~~ 423 (447)
.+.++.
T Consensus 350 ~~~n~~ 355 (366)
T KOG2774|consen 350 HKSNLK 355 (366)
T ss_pred HHhhhh
Confidence 777654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=162.78 Aligned_cols=215 Identities=15% Similarity=0.072 Sum_probs=145.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEecccccccc------------cC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPIL------------LE 179 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~------------~~ 179 (447)
+++++++||||+|+||.+++++|+++|++|++++|+.....+ ...... ..++.++.+|+.+... .+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAER-VAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999997533221 111111 2357889999876632 25
Q ss_pred CCEEEEeccCCCCCC-c----ccChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVH-Y----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+|+|||+||...... . .....+.+++|+.++.++++.+.+ .+. +||++||...+..
T Consensus 82 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 147 (251)
T PRK07231 82 VDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRP-------------- 147 (251)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCC--------------
Confidence 899999999743221 1 123456889999998888777653 444 8999999876532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.+|...+.+++.++.+. ++++++++||.+.++..................... ....+
T Consensus 148 --~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 216 (251)
T PRK07231 148 --RPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATI---------PLGRL 216 (251)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCC---------CCCCC
Confidence 2234789999999999999987653 899999999998765421100000001111111111 12347
Q ss_pred ccHHHHHHHHHHHHcCCC---CCc-EEecCC
Q 013226 327 QFVSDLVEGLIRLMEGDH---VGP-FNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~---~g~-~~i~~~ 353 (447)
++++|+|.+++.++.+.. .|. +.+.++
T Consensus 217 ~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 247 (251)
T PRK07231 217 GTPEDIANAALFLASDEASWITGVTLVVDGG 247 (251)
T ss_pred cCHHHHHHHHHHHhCccccCCCCCeEEECCC
Confidence 899999999999997653 354 455443
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=166.16 Aligned_cols=216 Identities=21% Similarity=0.189 Sum_probs=145.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++++++||||+|+||++++++|+++|++|++++|+.... +.+.......++.++.+|+.++. +.++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAAL-AATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGL 87 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 5778999999999999999999999999999999864322 22222222225678888887653 2468
Q ss_pred CEEEEeccCCCCC-C----cccChHHHHHHHHHHHHHHHHHHH----HCC--CeEEEEeCccc-cCCCCCCCCCCCcCCC
Q 013226 181 DQIYHLACPASPV-H----YKFNPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEV-YGDPLQHPQAETYWGN 248 (447)
Q Consensus 181 d~Vih~Ag~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~aa~----~~g--~r~v~~SS~~v-~g~~~~~~~~e~~~~~ 248 (447)
|+|||+||..... . ......+.+++|+.++.++++++. ..+ .+|+++||.+. ++.
T Consensus 88 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~------------- 154 (264)
T PRK12829 88 DVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGY------------- 154 (264)
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCC-------------
Confidence 9999999975221 1 112356789999999999888763 333 25777777552 221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCC-------CchHHHHHHHHHhCCCeEEec
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDD-------GRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 318 (447)
.....|+.+|...|.+++.++.+. +++++++|||+++||...... ......+.......
T Consensus 155 ----~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 223 (264)
T PRK12829 155 ----PGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEK------- 223 (264)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhc-------
Confidence 122579999999999999987654 899999999999998631100 00000011111110
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCc
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGE 355 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~ 355 (447)
.....+++++|+|+++..++.... .| .|++.++..
T Consensus 224 --~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 224 --ISLGRMVEPEDIAATALFLASPAARYITGQAISVDGNVE 262 (264)
T ss_pred --CCCCCCCCHHHHHHHHHHHcCccccCccCcEEEeCCCcc
Confidence 012358999999999998886432 23 788877654
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=161.86 Aligned_cols=204 Identities=17% Similarity=0.165 Sum_probs=141.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++|+++||||+|+||++++++|+++|++|++++|+.+... ...... ..++.++.+|+.+.. ..++
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLE-AARAEL-GESALVIRADAGDVAAQKALAQALAEAFGRL 81 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHH-HHHHHh-CCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999988633211 111111 235677888876542 2368
Q ss_pred CEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH---CCCeEEEEeCcc-ccCCCCCCCCCCCcCCCCCCC
Q 013226 181 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR---VGARFLLTSTSE-VYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~---~g~r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~ 252 (447)
|+||||||........ ......+++|+.++.++++++.+ .+.++|++||.. .++.+
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~---------------- 145 (249)
T PRK06500 82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMP---------------- 145 (249)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCC----------------
Confidence 9999999975433222 23556899999999999999875 234778877754 54422
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCcc--CCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
....|+.+|++.|.+++.++.+. ++++.+++||.+++|.... ........+........++. -+.
T Consensus 146 -~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 215 (249)
T PRK06500 146 -NSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLG---------RFG 215 (249)
T ss_pred -CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCC---------CCc
Confidence 12789999999999999887654 8999999999999874211 01111222323333222221 245
Q ss_pred cHHHHHHHHHHHHcCCC
Q 013226 328 FVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~ 344 (447)
.++|+++++++++.++.
T Consensus 216 ~~~~va~~~~~l~~~~~ 232 (249)
T PRK06500 216 TPEEIAKAVLYLASDES 232 (249)
T ss_pred CHHHHHHHHHHHcCccc
Confidence 78999999999987543
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=164.81 Aligned_cols=213 Identities=15% Similarity=0.093 Sum_probs=145.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-ecCCCCCcccccccc--CCCceEEEecccccccc------------
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVV-DNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------ 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------ 177 (447)
+++++|+||||+|+||.+++++|+++|++|+++ .|..... +...... ....+.++.+|+.+...
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAA-DETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNEL 82 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999876 4532211 1111111 12357788899977531
Q ss_pred ------cCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHHC--C-CeEEEEeCccccCCCCCCCCCCC
Q 013226 178 ------LEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRV--G-ARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 178 ------~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~~--g-~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
.++|+||||||.......... ....+++|+.++.++++++.+. . .++|++||..++..
T Consensus 83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~--------- 153 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLG--------- 153 (254)
T ss_pred ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCC---------
Confidence 258999999997544332222 3457789999999999988763 2 38999999876532
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
......|+.+|++.+.+++.++.+ .++++++++||.+++|-....... ..+ ........
T Consensus 154 -------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~--~~~-~~~~~~~~-------- 215 (254)
T PRK12746 154 -------FTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDD--PEI-RNFATNSS-------- 215 (254)
T ss_pred -------CCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccC--hhH-HHHHHhcC--------
Confidence 122367999999999999988765 479999999999988753110000 111 11111111
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---C-CcEEecCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---V-GPFNLGNP 353 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~-g~~~i~~~ 353 (447)
....+++++|+++++..++.++. . ..|++.++
T Consensus 216 ~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 216 VFGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred CcCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 11346789999999998887642 2 37888654
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=174.28 Aligned_cols=252 Identities=20% Similarity=0.147 Sum_probs=176.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCc--ccccccc--------------CCCceEEEeccc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKK--DNLIHHF--------------GNPRFELIRHDV 172 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~--~~~~~~~--------------~~~~v~~~~~D~ 172 (447)
-..+|+|+|||||||+|+.+++.|++.-. ++.++-|...... +.+.... ...++..+.+|+
T Consensus 9 f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi 88 (467)
T KOG1221|consen 9 FYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDI 88 (467)
T ss_pred HhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccc
Confidence 46889999999999999999999999752 7778887544322 1111100 124667788888
Q ss_pred ccccc-----------cCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCC
Q 013226 173 VEPIL-----------LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQH 239 (447)
Q Consensus 173 ~~~~~-----------~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~ 239 (447)
.++.+ .++|+|||+||. ..+.+.......+|..||+++++.|++... -++|+|++.+.. ...
T Consensus 89 ~~~~LGis~~D~~~l~~eV~ivih~AAt---vrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~--~~~ 163 (467)
T KOG1221|consen 89 SEPDLGISESDLRTLADEVNIVIHSAAT---VRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNC--NVG 163 (467)
T ss_pred cCcccCCChHHHHHHHhcCCEEEEeeee---eccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheec--ccc
Confidence 76643 359999999984 445566777889999999999999999864 899999987652 222
Q ss_pred CCCCCcCCCC-----------------------C---CCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCC
Q 013226 240 PQAETYWGNV-----------------------N---PIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRM 293 (447)
Q Consensus 240 ~~~e~~~~~~-----------------------~---~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~ 293 (447)
.+.|..+... . -....+.|.-+|+.+|.++...+ .+++++|+||+.|.....
T Consensus 164 ~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPsiI~st~~ 241 (467)
T KOG1221|consen 164 HIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPSIITSTYK 241 (467)
T ss_pred cccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCCceecccc
Confidence 2222111000 0 01235889999999999998864 478999999999988765
Q ss_pred ccCCCch-----HHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHc-----CCC--CCcEEecCCC--ccCHH
Q 013226 294 CIDDGRV-----VSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME-----GDH--VGPFNLGNPG--EFTML 359 (447)
Q Consensus 294 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~-----~~~--~g~~~i~~~~--~~s~~ 359 (447)
.+-+++. ...++..+.+|.--.+..+.+...++|+||.|+++++.+.- .+. .-+||+++++ +++|.
T Consensus 242 EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~ 321 (467)
T KOG1221|consen 242 EPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWG 321 (467)
T ss_pred CCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHH
Confidence 5433322 12222223333333456777888999999999999987652 111 2399998865 69999
Q ss_pred HHHHHHHHHhC
Q 013226 360 ELAEVVQEIID 370 (447)
Q Consensus 360 el~~~i~~~~g 370 (447)
++.+...+.+.
T Consensus 322 ~~~e~~~~~~~ 332 (467)
T KOG1221|consen 322 DFIELALRYFE 332 (467)
T ss_pred HHHHHHHHhcc
Confidence 99999998774
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=160.59 Aligned_cols=218 Identities=14% Similarity=0.087 Sum_probs=146.1
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------c
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~ 177 (447)
...+++|+++||||+|+||++++++|+++|++|++++|+.... ....+.++.+|+.+.. +
T Consensus 4 ~~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 4 FLELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD--------LPEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CcCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh--------cCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 3457889999999999999999999999999999999864321 1225778888987653 2
Q ss_pred cCCCEEEEeccCCCCC--C----cccChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 178 LEVDQIYHLACPASPV--H----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~--~----~~~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
.++|+||||||..... . ...+..+.+++|+.++.++++++ ++.+. ++|++||...+..
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~----------- 144 (260)
T PRK06523 76 GGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLP----------- 144 (260)
T ss_pred CCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCC-----------
Confidence 4589999999964211 1 11235568899999998876654 34444 8999999765421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCc-------hHHHHHHHHHhC-CCeE
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGR-------VVSNFVAQALRK-EPLT 315 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~-------~~~~~~~~~~~~-~~~~ 315 (447)
.......|+.+|+..+.+++.++.++ |+++.+++||.+.+|........ ............ ...+
T Consensus 145 ----~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (260)
T PRK06523 145 ----LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIP 220 (260)
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCc
Confidence 01123789999999999999988654 89999999999998753100000 000011111100 0011
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCccC
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFT 357 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s 357 (447)
...+...+|+|+++++++.+.. .| .+.+.++...|
T Consensus 221 -------~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 221 -------LGRPAEPEEVAELIAFLASDRAASITGTEYVIDGGTVPT 259 (260)
T ss_pred -------cCCCCCHHHHHHHHHHHhCcccccccCceEEecCCccCC
Confidence 1225678999999999997542 24 66666654443
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-18 Score=159.64 Aligned_cols=215 Identities=14% Similarity=0.039 Sum_probs=144.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-ecCCCCCcccccccc--CCCceEEEecccccccc------------
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVV-DNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------ 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------ 177 (447)
+.+++++||||+|+||++++++|+++|++|+++ .|..+. .++..... ...++.++.+|+.++..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKA-AEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356899999999999999999999999998874 554322 11111111 12467888899877631
Q ss_pred cCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
..+|+||||||.......... ....+++|+.++.++++++.+ .+. +||++||...+.
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------------- 146 (250)
T PRK08063 81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR-------------- 146 (250)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc--------------
Confidence 358999999997543332222 234678999999999888764 334 899999976432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+..+...|+.+|++.|.+++.++.+ .++++++++||.+..+........ ..+........ + ...
T Consensus 147 --~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~--~~~~~~~~~~~--~-------~~~ 213 (250)
T PRK08063 147 --YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNR--EELLEDARAKT--P-------AGR 213 (250)
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCc--hHHHHHHhcCC--C-------CCC
Confidence 1223368999999999999998765 589999999999987642111110 11111111111 0 123
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCCCc
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGE 355 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~ 355 (447)
+++++|+|++++.+++++. .| .+++.++..
T Consensus 214 ~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 214 MVEPEDVANAVLFLCSPEADMIRGQTIIVDGGRS 247 (250)
T ss_pred CcCHHHHHHHHHHHcCchhcCccCCEEEECCCee
Confidence 6899999999999997643 24 666665543
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-18 Score=160.24 Aligned_cols=217 Identities=15% Similarity=0.079 Sum_probs=147.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
...+|+++||||+|+||++++++|+++|++|++++++.....+.+.... ....+.++.+|+++.. .
T Consensus 6 ~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL 85 (258)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4467899999999999999999999999999988775332222111111 1235778889987652 2
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC----C-CeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----G-ARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~----g-~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|+||||||........ ....+.+++|+.++.++++++... + .++|+++|...+..
T Consensus 86 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~------------- 152 (258)
T PRK09134 86 GPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNL------------- 152 (258)
T ss_pred CCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCC-------------
Confidence 3589999999975432211 234568999999999999887653 2 27888887654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.+|++.|.+++.+++++ .+++++++||.++..... ....+. ......+ .+ ..
T Consensus 153 ---~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~-----~~~~~~-~~~~~~~---~~------~~ 214 (258)
T PRK09134 153 ---NPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ-----SPEDFA-RQHAATP---LG------RG 214 (258)
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc-----ChHHHH-HHHhcCC---CC------CC
Confidence 1112579999999999999998765 489999999988754311 111221 2222111 11 24
Q ss_pred ccHHHHHHHHHHHHcCCC-CC-cEEecCCCccCHH
Q 013226 327 QFVSDLVEGLIRLMEGDH-VG-PFNLGNPGEFTML 359 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~-~g-~~~i~~~~~~s~~ 359 (447)
.+++|+|++++.+++++. .| .|++.++..++|.
T Consensus 215 ~~~~d~a~~~~~~~~~~~~~g~~~~i~gg~~~~~~ 249 (258)
T PRK09134 215 STPEEIAAAVRYLLDAPSVTGQMIAVDGGQHLAWL 249 (258)
T ss_pred cCHHHHHHHHHHHhcCCCcCCCEEEECCCeecccc
Confidence 779999999999998753 34 6777766655543
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-18 Score=159.52 Aligned_cols=209 Identities=18% Similarity=0.126 Sum_probs=145.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc---ccc--CCCceEEEeccccccc-----------
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI---HHF--GNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~---~~~--~~~~v~~~~~D~~~~~----------- 176 (447)
+++|+++||||+|+||+++++.|+++|++|++++|......+... ... ...++.++.+|+.+..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999998875332222111 111 1236788899987663
Q ss_pred -ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH-----HCCC-eEEEEeCccccCCCCCCCCCCCc
Q 013226 177 -LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK-----RVGA-RFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~-----~~g~-r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
..++|.||||||......... +....+++|+.++.++++++. +.+. ++|++||...+..
T Consensus 84 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------- 153 (249)
T PRK12827 84 EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRG---------- 153 (249)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCC----------
Confidence 135899999999765332222 245678999999999999987 3444 8999999875422
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
......|+.+|++.+.+++.++.+ .+++++++|||.++++.... .+.. .......+.
T Consensus 154 ------~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~---~~~~---~~~~~~~~~-------- 213 (249)
T PRK12827 154 ------NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADN---AAPT---EHLLNPVPV-------- 213 (249)
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccc---cchH---HHHHhhCCC--------
Confidence 112367999999999999988765 38999999999999985321 1111 112222111
Q ss_pred eEccccHHHHHHHHHHHHcCCC---CC-cEEecC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGN 352 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~ 352 (447)
..+.+++|+|++++.++.+.. .| .+++.+
T Consensus 214 -~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~ 246 (249)
T PRK12827 214 -QRLGEPDEVAALVAFLVSDAASYVTGQVIPVDG 246 (249)
T ss_pred -cCCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence 124578999999999886532 24 556654
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=161.80 Aligned_cols=211 Identities=16% Similarity=0.155 Sum_probs=142.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++++||||+|+||.+++++|+++|++|+++.++.+.........+ ...++.++.+|+.+.. +..+
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL 81 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 4679999999999999999999999998887654322211111111 1235678888987652 1358
Q ss_pred CEEEEeccCCCCCC-ccc----ChHHHHHHHHHHHHHHHHHHHHC------C--CeEEEEeCcc-ccCCCCCCCCCCCcC
Q 013226 181 DQIYHLACPASPVH-YKF----NPVKTIKTNVVGTLNMLGLAKRV------G--ARFLLTSTSE-VYGDPLQHPQAETYW 246 (447)
Q Consensus 181 d~Vih~Ag~~~~~~-~~~----~~~~~~~~Nv~gt~~ll~aa~~~------g--~r~v~~SS~~-v~g~~~~~~~~e~~~ 246 (447)
|+||||||...... ... +....+++|+.++.++++++.+. + .+||++||.. .++.+.
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~--------- 152 (248)
T PRK06123 82 DALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPG--------- 152 (248)
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCC---------
Confidence 99999999754321 111 24468999999999988887542 1 2699999976 443211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
....|+.+|+..+.+++.++.+. +++++++||+.+++|..... ....++.......++.
T Consensus 153 -------~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~---~~~~~~~~~~~~~p~~-------- 214 (248)
T PRK06123 153 -------EYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASG---GEPGRVDRVKAGIPMG-------- 214 (248)
T ss_pred -------CccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhcc---CCHHHHHHHHhcCCCC--------
Confidence 01359999999999999998764 89999999999999853211 1122222222222221
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
-+.+++|++++++.++.+. ..| .|++.++
T Consensus 215 -~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~gg 247 (248)
T PRK06123 215 -RGGTAEEVARAILWLLSDEASYTTGTFIDVSGG 247 (248)
T ss_pred -CCcCHHHHHHHHHHHhCccccCccCCEEeecCC
Confidence 1347899999999998754 233 7777653
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-18 Score=158.38 Aligned_cols=213 Identities=15% Similarity=0.112 Sum_probs=147.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
++++|+|+||||+|+||++++++|+++|++|++++|+..... ...... ...++.++.+|+.++. +
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAE-ALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAF 80 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999999998643221 111111 1235778888987653 2
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
..+|+|||+||........ ....+.++.|+.++.++++++. +.+. +||++||.....
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~-------------- 146 (246)
T PRK05653 81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT-------------- 146 (246)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc--------------
Confidence 3579999999875432211 1245578999999999988874 4455 999999975321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+..+...|+.+|...+.+++.++++ .+++++++||+.++++... .+........... + ....
T Consensus 147 --~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~----~~~~~~~~~~~~~--~-------~~~~ 211 (246)
T PRK05653 147 --GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTE----GLPEEVKAEILKE--I-------PLGR 211 (246)
T ss_pred --CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchh----hhhHHHHHHHHhc--C-------CCCC
Confidence 1112367999999999999998764 4899999999999998631 1111111111111 1 1245
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
+++++|+++++..++.... .| .|+++++.
T Consensus 212 ~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~ 244 (246)
T PRK05653 212 LGQPEEVANAVAFLASDAASYITGQVIPVNGGM 244 (246)
T ss_pred CcCHHHHHHHHHHHcCchhcCccCCEEEeCCCe
Confidence 7899999999999987532 23 77777654
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=162.99 Aligned_cols=204 Identities=17% Similarity=0.152 Sum_probs=140.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEVD 181 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 181 (447)
++++|+||||+|+||++++++|+++|++|++++|+...... ..++.++.+|+.++. +..+|
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d 75 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP-------IPGVELLELDVTDDASVQAAVDEVIARAGRID 75 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc-------cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCC
Confidence 45789999999999999999999999999999986433211 135778888987753 23589
Q ss_pred EEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 182 QIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+.. .
T Consensus 76 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----------------~ 139 (270)
T PRK06179 76 VLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLP----------------A 139 (270)
T ss_pred EEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCC----------------C
Confidence 9999999764433222 34668999999999888874 45565 9999999764421 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCC--CchHHHHH--HHHHhCCCeEEecCCCeeEc
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDD--GRVVSNFV--AQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 325 (447)
.....|+.+|+..+.+++.++.+ .|+++++++||.+.++...... ...+..+- ...... .+. .....
T Consensus 140 ~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~ 213 (270)
T PRK06179 140 PYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSK-AVA-----KAVKK 213 (270)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHH-HHH-----hcccc
Confidence 12367999999999999998754 5999999999999887432110 00000000 000000 000 01112
Q ss_pred cccHHHHHHHHHHHHcCCCCC
Q 013226 326 FQFVSDLVEGLIRLMEGDHVG 346 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~~g 346 (447)
....+|+|+.++.++..+..+
T Consensus 214 ~~~~~~va~~~~~~~~~~~~~ 234 (270)
T PRK06179 214 ADAPEVVADTVVKAALGPWPK 234 (270)
T ss_pred CCCHHHHHHHHHHHHcCCCCC
Confidence 467789999999998876654
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=162.83 Aligned_cols=223 Identities=16% Similarity=0.176 Sum_probs=149.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------ 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------ 177 (447)
++++++++||||+|+||++++++|+++|++|++++|+.+.. ...... ...++.++.+|+.+...
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD--EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH--HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999865432 111111 12357889999976531
Q ss_pred cCCCEEEEeccCCCCCCcc---cChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 178 LEVDQIYHLACPASPVHYK---FNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~---~~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
.++|+||||||.......+ ++....+++|+.++.++.+++.+ .+.+||++||...+..
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~--------------- 146 (258)
T PRK08628 82 GRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTG--------------- 146 (258)
T ss_pred CCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccC---------------
Confidence 3589999999964332222 23456789999999999887653 2238999999774321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCch--HHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRV--VSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.+|+..+.+++.++.+ .+++++.|+||.+++|........+ ........... .+. + ..
T Consensus 147 -~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-----~~ 217 (258)
T PRK08628 147 -QGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAK--IPL-G-----HR 217 (258)
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhc--CCc-c-----cc
Confidence 112378999999999999998764 4899999999999987421000000 00111111111 110 0 23
Q ss_pred cccHHHHHHHHHHHHcCC---CCCcEEecCCCccCHHH
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVGPFNLGNPGEFTMLE 360 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g~~~i~~~~~~s~~e 360 (447)
++.++|+|+++++++..+ ..|.+...++....+++
T Consensus 218 ~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~~~~ 255 (258)
T PRK08628 218 MTTAEEIADTAVFLLSERSSHTTGQWLFVDGGYVHLDR 255 (258)
T ss_pred CCCHHHHHHHHHHHhChhhccccCceEEecCCcccccc
Confidence 678899999999999765 23533333444444444
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-18 Score=162.24 Aligned_cols=214 Identities=19% Similarity=0.156 Sum_probs=150.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|++|||||+|+||.+++++|+++|++|++++|+.....+...... ...++.++.+|+.+.. .
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999886433222221111 1235778889987652 1
Q ss_pred cCCCEEEEeccCCCCC-Ccc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 178 LEVDQIYHLACPASPV-HYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~-~~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
.++|+||||||..... ... +.....+++|+.++.++++++.+. +.++|++||...|....
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~------------ 190 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNE------------ 190 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCC------------
Confidence 3589999999974321 111 124568999999999999998653 24899999988664211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
....|+.+|++.+.+++.++.++ |+++++|+||.++.+..... .....+...... .....+
T Consensus 191 ----~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~---~~~~~~~~~~~~---------~~~~~~ 254 (290)
T PRK06701 191 ----TLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSD---FDEEKVSQFGSN---------TPMQRP 254 (290)
T ss_pred ----CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccc---cCHHHHHHHHhc---------CCcCCC
Confidence 12579999999999999998764 89999999999998753211 111222222111 112347
Q ss_pred ccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 327 QFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.+++|+|+++++++.+.. .| .+++.++
T Consensus 255 ~~~~dva~~~~~ll~~~~~~~~G~~i~idgg 285 (290)
T PRK06701 255 GQPEELAPAYVFLASPDSSYITGQMLHVNGG 285 (290)
T ss_pred cCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 899999999999998653 34 6666654
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=160.42 Aligned_cols=208 Identities=17% Similarity=0.173 Sum_probs=137.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc---cccCCCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI---HHFGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~---~~~~~~~v~~~~~D~~~~~------------~ 177 (447)
+++|+|+||||+|+||+++++.|+++|++|++++|+.+...+... .......+.++.+|+.++. +
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 367899999999999999999999999999999886443211111 1112234667788987652 1
Q ss_pred cCCCEEEEeccCCCCC---Cc-cc---ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCc
Q 013226 178 LEVDQIYHLACPASPV---HY-KF---NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~---~~-~~---~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
.++|+|||||+..... .+ +. .....+++|+.++..+++++ ++.+. +||++||...+..+..... +.
T Consensus 82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~-~~- 159 (256)
T PRK09186 82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFEIY-EG- 159 (256)
T ss_pred CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccchhc-cc-
Confidence 2389999999753211 11 11 23457888998877666654 44454 9999999765433221111 11
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
.+......|+.+|+..+.+++.++.+ .++++++++||.++++.. ..+........ .
T Consensus 160 ----~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~--------~~~~~~~~~~~---------~ 218 (256)
T PRK09186 160 ----TSMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP--------EAFLNAYKKCC---------N 218 (256)
T ss_pred ----cccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC--------HHHHHHHHhcC---------C
Confidence 12222247999999999999988775 489999999998876531 12222221111 0
Q ss_pred eEccccHHHHHHHHHHHHcCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~ 343 (447)
...+++++|+|+++++++.+.
T Consensus 219 ~~~~~~~~dva~~~~~l~~~~ 239 (256)
T PRK09186 219 GKGMLDPDDICGTLVFLLSDQ 239 (256)
T ss_pred ccCCCCHHHhhhhHhheeccc
Confidence 124789999999999999765
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=159.26 Aligned_cols=211 Identities=17% Similarity=0.129 Sum_probs=145.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQ 182 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~ 182 (447)
.++++++++||||+|+||+++++.|+++|++|++++|+.+... .+.. .....++.+|+.+.. ..++|+
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~-~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~d~ 80 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALD-RLAG---ETGCEPLRLDVGDDAAIRAALAAAGAFDG 80 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH---HhCCeEEEecCCCHHHHHHHHHHhCCCCE
Confidence 3467889999999999999999999999999999998643221 1111 113456777776643 135899
Q ss_pred EEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC----C--CeEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 183 IYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----G--ARFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 183 Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~----g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
||||||........ .+..+.+.+|+.++.++++++.+. + .+||++||...+.. .
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~ 144 (245)
T PRK07060 81 LVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVG----------------L 144 (245)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCC----------------C
Confidence 99999975432211 234557889999999999887542 3 38999999875432 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
.....|+.+|.+.|.+++.++.+ .+++++++|||.++++........ ........... ....++++
T Consensus 145 ~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~ 213 (245)
T PRK07060 145 PDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSD--PQKSGPMLAAI---------PLGRFAEV 213 (245)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccC--HHHHHHHHhcC---------CCCCCCCH
Confidence 12367999999999999998865 489999999999998853210000 01111111111 12358999
Q ss_pred HHHHHHHHHHHcCCC---CC-cEEecC
Q 013226 330 SDLVEGLIRLMEGDH---VG-PFNLGN 352 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~---~g-~~~i~~ 352 (447)
+|+|++++.++..+. .| .+++.+
T Consensus 214 ~d~a~~~~~l~~~~~~~~~G~~~~~~~ 240 (245)
T PRK07060 214 DDVAAPILFLLSDAASMVSGVSLPVDG 240 (245)
T ss_pred HHHHHHHHHHcCcccCCccCcEEeECC
Confidence 999999999998653 24 555544
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.2e-18 Score=158.98 Aligned_cols=203 Identities=14% Similarity=0.076 Sum_probs=141.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
.++++|+++||||+|+||+++++.|+++|++|++++|+..... ...... ...+.++.+|+++.. ..
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~-~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGS-KVAKAL-GENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHH-HHHHHc-CCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999999999999988543221 111111 235778899987753 13
Q ss_pred CCCEEEEeccCCCCC--Cc----ccChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPV--HY----KFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.+|+||||||..... .. ..+..+.+++|+.++.++++++.+ .+.++|++||...+..
T Consensus 84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~------------- 150 (255)
T PRK05717 84 RLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQS------------- 150 (255)
T ss_pred CCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCC-------------
Confidence 489999999975432 11 112457899999999999999864 2348999999764321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.+|++.+.+++.++.++ ++++.+++||.+.++..... ....+ ...... ..+ ...+
T Consensus 151 ---~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~---~~~~~-~~~~~~-~~~-------~~~~ 215 (255)
T PRK05717 151 ---EPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQR---RAEPL-SEADHA-QHP-------AGRV 215 (255)
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccc---cchHH-HHHHhh-cCC-------CCCC
Confidence 1112679999999999999998875 58999999999998753111 00111 111111 011 1236
Q ss_pred ccHHHHHHHHHHHHcCC
Q 013226 327 QFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~ 343 (447)
.+++|+|.++.+++...
T Consensus 216 ~~~~~va~~~~~l~~~~ 232 (255)
T PRK05717 216 GTVEDVAAMVAWLLSRQ 232 (255)
T ss_pred cCHHHHHHHHHHHcCch
Confidence 78899999999988754
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=165.78 Aligned_cols=213 Identities=13% Similarity=0.072 Sum_probs=140.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEVD 181 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 181 (447)
++|+++||||+|+||++++++|+++|++|++++|+..... .+ ...++.++.+|+.+.. ..++|
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~-~~----~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id 76 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKME-DL----ASLGVHPLSLDVTDEASIKAAVDTIIAEEGRID 76 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HH----HhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999998643221 11 1124778888887753 13689
Q ss_pred EEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHH----HHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 182 QIYHLACPASPVHYK----FNPVKTIKTNVVGTLNML----GLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll----~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+||||||........ .+....+++|+.++..++ ..+++.+. ++|++||...+.. .
T Consensus 77 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~----------------~ 140 (273)
T PRK06182 77 VLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIY----------------T 140 (273)
T ss_pred EEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCC----------------C
Confidence 999999976443322 234568899999965554 45566665 9999999753211 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCC--------chHHHHHHHHHhCCCeEEecCCC
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDG--------RVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
.....|+.+|++.+.+++.++.+ .|+++++++||.+.++....... ............ .+....
T Consensus 141 ~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 215 (273)
T PRK06182 141 PLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAA-----SMRSTY 215 (273)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHH-----HHHHhh
Confidence 11256999999999998887643 58999999999998874310000 000000000000 000000
Q ss_pred eeEccccHHHHHHHHHHHHcCCCC-CcEEecC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDHV-GPFNLGN 352 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~~-g~~~i~~ 352 (447)
....+.+++|+|++++.++++... ..|+++.
T Consensus 216 ~~~~~~~~~~vA~~i~~~~~~~~~~~~~~~g~ 247 (273)
T PRK06182 216 GSGRLSDPSVIADAISKAVTARRPKTRYAVGF 247 (273)
T ss_pred ccccCCCHHHHHHHHHHHHhCCCCCceeecCc
Confidence 123467899999999999987644 4566543
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=157.92 Aligned_cols=214 Identities=13% Similarity=0.065 Sum_probs=147.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++|+|+||||+|+||.+++++|+++|++|++++|+........... ...++..+.+|+++.. ..++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 81 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEA-LGRRFLSLTADLSDIEAIKALVDSAVEEFGHI 81 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHh-cCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999998532111111111 1235788889987652 2359
Q ss_pred CEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 181 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
|+||||||........ ....+.+++|+.++.++++++.+ .+ .++|++||...+...
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------------- 147 (248)
T TIGR01832 82 DILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG-------------- 147 (248)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC--------------
Confidence 9999999976443222 13456789999999999988753 33 389999998766421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
.....|+.+|++.+.+++.++.+. |+++++++||.+..+........ .......... .+ ...|+
T Consensus 148 --~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~~--~~-------~~~~~ 214 (248)
T TIGR01832 148 --IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRAD--EDRNAAILER--IP-------AGRWG 214 (248)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccC--hHHHHHHHhc--CC-------CCCCc
Confidence 112579999999999999998874 89999999999987742110000 0011111111 11 13578
Q ss_pred cHHHHHHHHHHHHcCCC---CCcEEecCCC
Q 013226 328 FVSDLVEGLIRLMEGDH---VGPFNLGNPG 354 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~---~g~~~i~~~~ 354 (447)
..+|+|+++++++.... .|.+...+++
T Consensus 215 ~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 244 (248)
T TIGR01832 215 TPDDIGGPAVFLASSASDYVNGYTLAVDGG 244 (248)
T ss_pred CHHHHHHHHHHHcCccccCcCCcEEEeCCC
Confidence 99999999999997543 3655554443
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-18 Score=159.29 Aligned_cols=199 Identities=16% Similarity=0.097 Sum_probs=141.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+.+|++|||||+|+||+.++++|+++|++|++++|+. .. .....+.++.+|+.+.. ...
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~------~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF------LT--QEDYPFATFVLDVSDAAAVAQVCQRLLAETGP 76 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch------hh--hcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 35678999999999999999999999999999999864 00 11235778888887652 234
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||........ .+....+++|+.++.++++++.. .+. +||++||.....
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~---------------- 140 (252)
T PRK08220 77 LDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHV---------------- 140 (252)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhcc----------------
Confidence 89999999975433222 23556899999999999988743 333 899999975421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC--C----CchHHHHHHHHHhCCCeEEecCCC
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID--D----GRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
+......|+.+|+..+.+++.++.+ .++++++++||.+++|..... . ...+.........+ .
T Consensus 141 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 211 (252)
T PRK08220 141 PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLG---------I 211 (252)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhc---------C
Confidence 2223478999999999999998876 689999999999998853100 0 00000001111111 1
Q ss_pred eeEccccHHHHHHHHHHHHcCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
....+++++|+|+++++++.+.
T Consensus 212 ~~~~~~~~~dva~~~~~l~~~~ 233 (252)
T PRK08220 212 PLGKIARPQEIANAVLFLASDL 233 (252)
T ss_pred CCcccCCHHHHHHHHHHHhcch
Confidence 1235789999999999999754
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-18 Score=157.93 Aligned_cols=205 Identities=16% Similarity=0.105 Sum_probs=144.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+|+||||+|+||++++++|+++|++|++++|+.....+.. .......+.++.+|+.+.. +.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTL-PGVPADALRIGGIDLVDPQAARRAVDEVNRQFGR 82 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHH-HHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 356789999999999999999999999999999999654322211 1122234667778876532 236
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+|||+||........ ....+.+++|+.++.++++++. +.+. +||++||...++..
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------- 148 (239)
T PRK12828 83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAG-------------- 148 (239)
T ss_pred cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCC--------------
Confidence 89999999865322211 1234578899999999988874 3444 99999998866421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
.....|+.+|...+.+++.++.+ .++++.++|||.++++.... ... . .....|+
T Consensus 149 --~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~-----------------~~~--~--~~~~~~~ 205 (239)
T PRK12828 149 --PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRA-----------------DMP--D--ADFSRWV 205 (239)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhh-----------------cCC--c--hhhhcCC
Confidence 12367999999999999887654 58999999999999874210 000 0 1123379
Q ss_pred cHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 328 FVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
+++|+|+++..++.+.. .| .+++.++.
T Consensus 206 ~~~dva~~~~~~l~~~~~~~~g~~~~~~g~~ 236 (239)
T PRK12828 206 TPEQIAAVIAFLLSDEAQAITGASIPVDGGV 236 (239)
T ss_pred CHHHHHHHHHHHhCcccccccceEEEecCCE
Confidence 99999999999998653 24 56665544
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-18 Score=160.93 Aligned_cols=201 Identities=13% Similarity=0.098 Sum_probs=140.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++|+||||+|+||.++++.|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +.++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLA-SLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999999999998643221 111111 1236778889987753 2368
Q ss_pred CEEEEeccCCCCCCcccC-----hHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 181 DQIYHLACPASPVHYKFN-----PVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~-----~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
|+||||||.......... ..+.+++|+.++.++++.+.+ .+.++|++||...+..
T Consensus 80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~---------------- 143 (263)
T PRK06181 80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTG---------------- 143 (263)
T ss_pred CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCC----------------
Confidence 999999997554332222 456799999999999998753 2348999999876532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
..+...|+.+|...+.+++.++.+ .++++++++||.+..+... .... ..+.+.. ..+.....+++
T Consensus 144 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~--------~~~~--~~~~~~~--~~~~~~~~~~~ 211 (263)
T PRK06181 144 VPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRK--------RALD--GDGKPLG--KSPMQESKIMS 211 (263)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcch--------hhcc--ccccccc--cccccccCCCC
Confidence 112378999999999999888654 4899999999998876421 0000 0011111 11112236899
Q ss_pred HHHHHHHHHHHHcCCC
Q 013226 329 VSDLVEGLIRLMEGDH 344 (447)
Q Consensus 329 v~D~a~ai~~~l~~~~ 344 (447)
++|+|++++.+++.+.
T Consensus 212 ~~dva~~i~~~~~~~~ 227 (263)
T PRK06181 212 AEECAEAILPAIARRK 227 (263)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 9999999999998643
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=161.76 Aligned_cols=215 Identities=15% Similarity=0.106 Sum_probs=147.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCC-cccccccc--CCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGK-KDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~-~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.... .+.+.... ...++.++.+|+.+..
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999887643221 11221111 1235678889997752
Q ss_pred ccCCCEEEEeccCCCC-CCc----ccChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 177 LLEVDQIYHLACPASP-VHY----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+.++|++|||||.... ... ..+..+.+++|+.++.++++++... +.+||++||...+...
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~------------ 193 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPS------------ 193 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCC------------
Confidence 2458999999996421 111 1235568999999999999988653 3489999998765321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
.....|+.+|++.+.+++.++.+ .|+++.+|+||.|++|....... ............+ ...
T Consensus 194 ----~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~r 258 (294)
T PRK07985 194 ----PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ--TQDKIPQFGQQTP---------MKR 258 (294)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCC--CHHHHHHHhccCC---------CCC
Confidence 11267999999999999999876 48999999999999985321100 0111222222111 123
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+...+|+|+++++++..+. .| .+.+.++
T Consensus 259 ~~~pedva~~~~fL~s~~~~~itG~~i~vdgG 290 (294)
T PRK07985 259 AGQPAELAPVYVYLASQESSYVTAEVHGVCGG 290 (294)
T ss_pred CCCHHHHHHHHHhhhChhcCCccccEEeeCCC
Confidence 5678999999999997653 24 5555543
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=158.15 Aligned_cols=200 Identities=16% Similarity=0.138 Sum_probs=145.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC---CCceEEEecccccccc-----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG---NPRFELIRHDVVEPIL----------- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~~----------- 177 (447)
..++++++|||||++||.+++++|+++|++|+++.|+.+... ++...+. ...++++..|+.++..
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~-~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLE-ALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHH-HHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 357789999999999999999999999999999999754322 2222221 3468899999977631
Q ss_pred -cCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 -LEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 -~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
..+|++|||||......+.+. ..+++++|+.++..+..+. .+.+. +||.++|.+.|-
T Consensus 82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~------------- 148 (265)
T COG0300 82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLI------------- 148 (265)
T ss_pred CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcC-------------
Confidence 259999999998766544332 4468999999987777764 44454 999999988652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
|....+.|+.||+..-.+.+.+..| .|+.++.+.||.+.... .. . .+..... . ....
T Consensus 149 ---p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f------------~~-~-~~~~~~~--~-~~~~ 208 (265)
T COG0300 149 ---PTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEF------------FD-A-KGSDVYL--L-SPGE 208 (265)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccc------------cc-c-ccccccc--c-cchh
Confidence 3333488999999999999888765 48999999998776543 11 0 1111110 0 1124
Q ss_pred ccccHHHHHHHHHHHHcCCCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~~ 345 (447)
-++..+|+|+..+..+++...
T Consensus 209 ~~~~~~~va~~~~~~l~~~k~ 229 (265)
T COG0300 209 LVLSPEDVAEAALKALEKGKR 229 (265)
T ss_pred hccCHHHHHHHHHHHHhcCCc
Confidence 578999999999999998664
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=157.66 Aligned_cols=214 Identities=18% Similarity=0.148 Sum_probs=145.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++++++||||+|+||++++++|+++|++|++++|+..... .+.... ...++.++.+|+.+.. +.+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAE-KVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999988643221 111111 1235788899987642 135
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+|||+||......... ...+.+++|+.++.++++++. +.+. ++|++||...+....
T Consensus 81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~------------- 147 (250)
T TIGR03206 81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSS------------- 147 (250)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCC-------------
Confidence 899999998653322222 234579999999999888764 4454 899999987654311
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCC--chHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
....|+.+|++.+.+++.++.+. ++++++++||.++++....... .-...+........+. .-
T Consensus 148 ---~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 215 (250)
T TIGR03206 148 ---GEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPL---------GR 215 (250)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCc---------cC
Confidence 12679999999999999988764 8999999999999874211000 0001112222221111 12
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+...+|+|+++..++..+. .| .+++.++
T Consensus 216 ~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 247 (250)
T TIGR03206 216 LGQPDDLPGAILFFSSDDASFITGQVLSVSGG 247 (250)
T ss_pred CcCHHHHHHHHHHHcCcccCCCcCcEEEeCCC
Confidence 4567999999999987653 24 6777654
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-18 Score=160.17 Aligned_cols=211 Identities=15% Similarity=0.106 Sum_probs=145.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++++++++||||+|+||.+++++|+++|++|++++|+... ...........+..+.+|+.+.. +.+
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 89 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDV--AEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGR 89 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 3578999999999999999999999999999999986432 11111122335667888887653 235
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccc-cCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEV-YGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v-~g~~~~~~~~e~~~~~~ 249 (447)
+|+||||||........ .+..+.+++|+.++.++++++.. .+. +||++||... ++.+
T Consensus 90 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 156 (255)
T PRK06841 90 IDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALE------------- 156 (255)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCC-------------
Confidence 89999999975432221 12445889999999999998754 333 9999999763 3321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
....|+.+|++.+.+++.++.+ .+++++.|+||.+..+..... +........... .+ ...+
T Consensus 157 ----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~---~~~~~~~~~~~~--~~-------~~~~ 220 (255)
T PRK06841 157 ----RHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKA---WAGEKGERAKKL--IP-------AGRF 220 (255)
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccc---cchhHHHHHHhc--CC-------CCCC
Confidence 1267999999999999998876 489999999999887642110 001111111111 11 1247
Q ss_pred ccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 327 QFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.+++|+|++++.++..+. .| .+.+.++
T Consensus 221 ~~~~~va~~~~~l~~~~~~~~~G~~i~~dgg 251 (255)
T PRK06841 221 AYPEEIAAAALFLASDAAAMITGENLVIDGG 251 (255)
T ss_pred cCHHHHHHHHHHHcCccccCccCCEEEECCC
Confidence 899999999999997642 35 4455443
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=156.98 Aligned_cols=212 Identities=16% Similarity=0.147 Sum_probs=142.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC-
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE- 179 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~- 179 (447)
+++|+++||||+|+||+++++.|+++|++|++++++.....+.+..... .++.++.+|+.+.. +..
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 81 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELG-DRAIALQADVTDREQVQAMFATATEHFGKP 81 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999999998876643322222222121 36778888886642 123
Q ss_pred CCEEEEeccCCCC------CCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCC
Q 013226 180 VDQIYHLACPASP------VHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 180 ~d~Vih~Ag~~~~------~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+|+||||||.... .... ....+.+++|+.++.++++++.. .+. ++|++||....
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~----------- 150 (253)
T PRK08642 82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQ----------- 150 (253)
T ss_pred CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcccc-----------
Confidence 8999999986321 0111 12445799999999999998753 344 89999986432
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
.+..+...|+.+|++.|.+++.++++ .++++..|+||.+..+.... ............. .+
T Consensus 151 -----~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~---~~~~~~~~~~~~~--~~------ 214 (253)
T PRK08642 151 -----NPVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASA---ATPDEVFDLIAAT--TP------ 214 (253)
T ss_pred -----CCCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhc---cCCHHHHHHHHhc--CC------
Confidence 12233468999999999999999876 47999999999987653211 0111122222221 11
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
...+.+.+|+++++++++.... .| .+.+.++
T Consensus 215 -~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg 249 (253)
T PRK08642 215 -LRKVTTPQEFADAVLFFASPWARAVTGQNLVVDGG 249 (253)
T ss_pred -cCCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 1247899999999999997542 34 5555443
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-17 Score=153.90 Aligned_cols=207 Identities=16% Similarity=0.098 Sum_probs=142.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.... .++.++.+|+.++. +.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~----------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY----------NDVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc----------CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35789999999999999999999999999999999864321 15778888887652 235
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||......... +....+++|+.|+..+++++.+ .+. +||++||...+.
T Consensus 73 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 136 (258)
T PRK06398 73 IDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA---------------- 136 (258)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc----------------
Confidence 999999999754333222 2345789999999998887643 333 999999987542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccC-------CCchHHHHHHHHHhCCCeEEecCCC
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCID-------DGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
+......|+.+|++.+.+++.++.++ ++++++|+||.+-.+..... ........+... ....
T Consensus 137 ~~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 207 (258)
T PRK06398 137 VTRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREW---------GEMH 207 (258)
T ss_pred CCCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhh---------hhcC
Confidence 12234789999999999999998765 49999999998876531100 000000000110 0101
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
....+..++|+|+++++++.... .| .+.+.++
T Consensus 208 ~~~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dgg 243 (258)
T PRK06398 208 PMKRVGKPEEVAYVVAFLASDLASFITGECVTVDGG 243 (258)
T ss_pred CcCCCcCHHHHHHHHHHHcCcccCCCCCcEEEECCc
Confidence 11235788999999999987542 34 4444443
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-17 Score=155.42 Aligned_cols=214 Identities=16% Similarity=0.077 Sum_probs=142.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+.+|+++||||+|+||++++++|+++|++|+++.++.....+.+. ..++.++.+|+.++. ..+
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR----EKGVFTIKCDVGNRDQVKKSKEVVEKEFGR 79 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH----hCCCeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3568999999999999999999999999999988765332222221 124678888987763 235
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||......+. .+....+++|+.++..++++ +++.+. +||++||...++..
T Consensus 80 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~-------------- 145 (255)
T PRK06463 80 VDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTA-------------- 145 (255)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCC--------------
Confidence 89999999975322222 12456889999997665544 444444 99999998765421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC-CCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.+|++.+.+++.++.+ .|+++++++||.+-.+-.... .......+........+ ...+
T Consensus 146 -~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 215 (255)
T PRK06463 146 -AEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTV---------LKTT 215 (255)
T ss_pred -CCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCC---------cCCC
Confidence 112367999999999999999865 489999999998865532100 00000111111111111 1235
Q ss_pred ccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 327 QFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
...+|+|+++++++.... .| .+.+.++
T Consensus 216 ~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg 246 (255)
T PRK06463 216 GKPEDIANIVLFLASDDARYITGQVIVADGG 246 (255)
T ss_pred cCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 678999999999987643 35 5555443
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=182.83 Aligned_cols=224 Identities=17% Similarity=0.132 Sum_probs=152.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEeccccccc------------c
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------~ 177 (447)
..+.+++++||||+|+||.++++.|+++|++|++++|+...... ....+. ...+.++.+|+++.. .
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~-~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEA-AAAELGGPDRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHH-HHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 34578999999999999999999999999999999986533211 111111 136778888887653 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCC--CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||......... .....+++|+.|+.++++++. +.+ .+||++||...+..
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~------------ 564 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNP------------ 564 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCC------------
Confidence 36999999999765433222 245578999999999977764 333 48999999764321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeecccc-CCCCccCCCchHHHHHHHHHhCCCe----EEecC
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTY-GPRMCIDDGRVVSNFVAQALRKEPL----TVYGD 319 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~-Gp~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 319 (447)
......|+.+|+..+.+++.++.+. |+++++++|+.+| +++.... .+.. ......+... ..+..
T Consensus 565 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~--~~~~--~~~~~~g~~~~~~~~~~~~ 636 (681)
T PRK08324 565 ----GPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTG--EWIE--ARAAAYGLSEEELEEFYRA 636 (681)
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccc--hhhh--hhhhhccCChHHHHHHHHh
Confidence 1123789999999999999998664 6999999999998 6543111 1100 0001111110 01233
Q ss_pred CCeeEccccHHHHHHHHHHHHcC--C-CCC-cEEecCCCc
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEG--D-HVG-PFNLGNPGE 355 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~--~-~~g-~~~i~~~~~ 355 (447)
+...+.+++++|+|++++.++.. . ..| ++++.++..
T Consensus 637 ~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG~~ 676 (681)
T PRK08324 637 RNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDGGNA 676 (681)
T ss_pred cCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECCCch
Confidence 34456789999999999999842 2 234 788877654
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-17 Score=153.47 Aligned_cols=211 Identities=17% Similarity=0.168 Sum_probs=144.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++|+|+||||+|+||++++++|+++|++|+++.|+............ ...++.++.+|+.+.. +.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999888876443222211111 1346778888887653 13
Q ss_pred CCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC----CC-eEEEEeCcc-ccCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSE-VYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~----g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~ 248 (447)
++|+|||+||........ ....+.+.+|+.++.++++++.+. +. +||++||.. +++.+
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~------------ 150 (248)
T PRK05557 83 GVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNP------------ 150 (248)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCC------------
Confidence 689999999975432221 124567889999999998887643 43 899999965 44432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
....|+.+|.+.+.+++.++.+ .++++++++||.+.++... .....+........+ ...
T Consensus 151 -----~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~----~~~~~~~~~~~~~~~---------~~~ 212 (248)
T PRK05557 151 -----GQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTD----ALPEDVKEAILAQIP---------LGR 212 (248)
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCcccc----ccChHHHHHHHhcCC---------CCC
Confidence 1367999999999999887653 4899999999988655321 111222222222211 123
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+.+++|+++++..++.+.. .| .|++.++
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~ 244 (248)
T PRK05557 213 LGQPEEIASAVAFLASDEAAYITGQTLHVNGG 244 (248)
T ss_pred CcCHHHHHHHHHHHcCcccCCccccEEEecCC
Confidence 6789999999998886522 23 7788654
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=158.57 Aligned_cols=189 Identities=12% Similarity=0.074 Sum_probs=135.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEecccccccc------------cCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPIL------------LEVD 181 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~------------~~~d 181 (447)
+|+|+||||+|+||++++++|+++|++|++++|+.+... ....... ..++.++.+|++++.. ..+|
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQ-AFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 478999999999999999999999999999998643221 1111111 1168889999987531 2489
Q ss_pred EEEEeccCCCCCCcc-----cChHHHHHHHHHHHHHHHH----HHHHCCC-eEEEEeCcccc-CCCCCCCCCCCcCCCCC
Q 013226 182 QIYHLACPASPVHYK-----FNPVKTIKTNVVGTLNMLG----LAKRVGA-RFLLTSTSEVY-GDPLQHPQAETYWGNVN 250 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~-----~~~~~~~~~Nv~gt~~ll~----aa~~~g~-r~v~~SS~~v~-g~~~~~~~~e~~~~~~~ 250 (447)
+||||||........ ......+++|+.|+.++++ ++++.+. +||++||...+ +.
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~--------------- 145 (257)
T PRK07024 81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGL--------------- 145 (257)
T ss_pred EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC---------------
Confidence 999999975432211 2355689999999988777 4455554 89999997643 22
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
.....|+.+|+..+.+++.++.+ .++++++++||.+.+|.... ... .. ..++
T Consensus 146 --~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----------------~~~---~~----~~~~ 200 (257)
T PRK07024 146 --PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAH----------------NPY---PM----PFLM 200 (257)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhc----------------CCC---CC----CCcc
Confidence 12267999999999999988743 58999999999998864210 000 00 1136
Q ss_pred cHHHHHHHHHHHHcCCC
Q 013226 328 FVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~ 344 (447)
..+++++.++.++.++.
T Consensus 201 ~~~~~a~~~~~~l~~~~ 217 (257)
T PRK07024 201 DADRFAARAARAIARGR 217 (257)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 78999999999998654
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=156.76 Aligned_cols=206 Identities=17% Similarity=0.102 Sum_probs=143.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||.+++++|+++|++|++++|+..... ...... ...++.++.+|+.+.. .
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELE-EAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999999999998643211 111111 1235778899998752 1
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC-----CC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV-----GA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~-----g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||......... ...+.+++|+.++.++++++.+. +. +||++||...+.....
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~--------- 158 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP--------- 158 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc---------
Confidence 35899999999653322222 24567889999999999987654 44 8999999765432111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
...+...|+.+|++.+.+++.+++++ ++++.+++|+.+-++.. ..++..+........++..
T Consensus 159 ---~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~----~~~~~~~~~~~~~~~~~~~-------- 223 (259)
T PRK08213 159 ---EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMT----RGTLERLGEDLLAHTPLGR-------- 223 (259)
T ss_pred ---cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcch----hhhhHHHHHHHHhcCCCCC--------
Confidence 01123689999999999999998754 79999999988876532 1233444444433333222
Q ss_pred ccccHHHHHHHHHHHHcCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~ 343 (447)
+...+|+++++.+++...
T Consensus 224 -~~~~~~va~~~~~l~~~~ 241 (259)
T PRK08213 224 -LGDDEDLKGAALLLASDA 241 (259)
T ss_pred -CcCHHHHHHHHHHHhCcc
Confidence 345799999999888654
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=155.13 Aligned_cols=215 Identities=14% Similarity=0.094 Sum_probs=144.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+.....+ ...++.++.+|+.++.
T Consensus 4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999986432212211111 1235778889987653
Q ss_pred ccCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCcccc-CCCCCCCCCCCcC
Q 013226 177 LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVY-GDPLQHPQAETYW 246 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~-g~~~~~~~~e~~~ 246 (447)
+.++|+||||||........ .+..+.+++|+.++..+++++. +.+. ++|++||...+ +.+
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------- 153 (254)
T PRK06114 84 LGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNR---------- 153 (254)
T ss_pred cCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCC----------
Confidence 23589999999975432221 2345678999999988777653 3444 89999997633 221
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.+|++.+.+++.++.+ .|+++.+++||.+.++.... ... ...........++
T Consensus 154 -----~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~--~~~-~~~~~~~~~~~p~--------- 216 (254)
T PRK06114 154 -----GLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTR--PEM-VHQTKLFEEQTPM--------- 216 (254)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccc--ccc-hHHHHHHHhcCCC---------
Confidence 111367999999999999999865 48999999999998875321 111 1111111111111
Q ss_pred EccccHHHHHHHHHHHHcCCC---CC-cEEecC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH---VG-PFNLGN 352 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~ 352 (447)
.-+..++|+++++++++.+.. .| ++.+.+
T Consensus 217 ~r~~~~~dva~~~~~l~s~~~~~~tG~~i~~dg 249 (254)
T PRK06114 217 QRMAKVDEMVGPAVFLLSDAASFCTGVDLLVDG 249 (254)
T ss_pred CCCcCHHHHHHHHHHHcCccccCcCCceEEECc
Confidence 125678999999999987543 34 444443
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=159.06 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=118.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc-------------cCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL-------------LEV 180 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------------~~~ 180 (447)
.+++|+||||+|+||+++++.|+++|++|++++|+.+... .+ ....++++.+|+.+... ..+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~-~l----~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~i 77 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVA-AL----EAEGLEAFQLDYAEPESIAALVAQVLELSGGRL 77 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HH----HHCCceEEEccCCCHHHHHHHHHHHHHHcCCCc
Confidence 4678999999999999999999999999999998643221 11 12257788889877521 258
Q ss_pred CEEEEeccCCCCCCcccC----hHHHHHHHHHH----HHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 181 DQIYHLACPASPVHYKFN----PVKTIKTNVVG----TLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~g----t~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
|+||||||.......... ....+++|+.| +++++..+++.+. +||++||...+. +
T Consensus 78 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------------~ 141 (277)
T PRK05993 78 DALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV----------------P 141 (277)
T ss_pred cEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC----------------C
Confidence 999999997654433322 34588999999 5556666777665 999999975431 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCC
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGP 291 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp 291 (447)
......|+.||++.+.+++.++.+ .|+++++++||.+..+
T Consensus 142 ~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~ 184 (277)
T PRK05993 142 MKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETR 184 (277)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCc
Confidence 223478999999999999988743 5899999999988765
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-17 Score=151.22 Aligned_cols=203 Identities=20% Similarity=0.166 Sum_probs=139.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----c------cCCCE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L------LEVDQ 182 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~------~~~d~ 182 (447)
.+|+|+||||+|+||++++++|+++|++|++++|..... . ..+++..|+.+.. + .++|+
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~---~-------~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~ 71 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD---F-------PGELFACDLADIEQTAATLAQINEIHPVDA 71 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc---c-------CceEEEeeCCCHHHHHHHHHHHHHhCCCcE
Confidence 468899999999999999999999999999999865431 0 1245677776652 1 15899
Q ss_pred EEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 183 IYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
||||||......+.. +....+++|+.++.++.+++ ++.+. +||++||...|+.+.
T Consensus 72 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------------- 135 (234)
T PRK07577 72 IVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGALD---------------- 135 (234)
T ss_pred EEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCCC----------------
Confidence 999999765433322 24457899999988877665 44555 999999987664321
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
...|+.+|...+.+++.++.+ .|++++++|||.+.++...... ..............+. ..+...+
T Consensus 136 -~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~ 204 (234)
T PRK07577 136 -RTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTR-PVGSEEEKRVLASIPM---------RRLGTPE 204 (234)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCccccccc-ccchhHHHHHhhcCCC---------CCCcCHH
Confidence 267999999999999988754 4899999999999876532110 0001111112221111 1245789
Q ss_pred HHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 331 DLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 331 D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
|+|++++.++..+ ..| .+.+.++
T Consensus 205 ~~a~~~~~l~~~~~~~~~g~~~~~~g~ 231 (234)
T PRK07577 205 EVAAAIAFLLSDDAGFITGQVLGVDGG 231 (234)
T ss_pred HHHHHHHHHhCcccCCccceEEEecCC
Confidence 9999999999764 234 5555443
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.5e-17 Score=152.07 Aligned_cols=211 Identities=16% Similarity=0.120 Sum_probs=145.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++++|+++||||+|+||++++++|+++|++|++++|+... . .....+.++.+|+.+.. ..+
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~---~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE---T----VDGRPAEFHAADVRDPDQVAALVDAIVERHGR 75 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh---h----hcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3578999999999999999999999999999999986432 0 11235778888987652 135
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----C-C-CeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----V-G-ARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~-g-~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+|+||||||......... .....+++|+.++..+++++.. . + .+||++||...+.
T Consensus 76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~--------------- 140 (252)
T PRK07856 76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR--------------- 140 (252)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC---------------
Confidence 899999999754322221 2456889999999999998754 2 2 3899999986432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
+......|+.+|+..+.+++.++.++ .+++.+++||.+..+........ ...........+ ...+.
T Consensus 141 -~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~---------~~~~~ 208 (252)
T PRK07856 141 -PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGD--AEGIAAVAATVP---------LGRLA 208 (252)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccC--HHHHHHHhhcCC---------CCCCc
Confidence 11223789999999999999998764 38999999999887642110000 111111111111 12256
Q ss_pred cHHHHHHHHHHHHcCCC---CC-cEEecCCCcc
Q 013226 328 FVSDLVEGLIRLMEGDH---VG-PFNLGNPGEF 356 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~ 356 (447)
..+|+|+++++++.... .| .+.+.++...
T Consensus 209 ~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~~~ 241 (252)
T PRK07856 209 TPADIAWACLFLASDLASYVSGANLEVHGGGER 241 (252)
T ss_pred CHHHHHHHHHHHcCcccCCccCCEEEECCCcch
Confidence 78999999999987642 34 5566555443
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=157.44 Aligned_cols=193 Identities=14% Similarity=0.023 Sum_probs=137.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++++++++||||+|+||++++++|+++|++|++++|+.+... ...... ..+.++.+|+.++. ..+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAK-ETAAEL--GLVVGGPLDVTDPASFAAFLDAVEADLGP 78 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHh--ccceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 356789999999999999999999999999999988543221 111111 14677888887653 245
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|++|||||......... .....+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 79 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 143 (273)
T PRK07825 79 IDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIP--------------- 143 (273)
T ss_pred CCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCC---------------
Confidence 899999999764433222 244578999999888777653 4555 8999999864321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
......|+.+|+..+.+.+.++.+ .|+++++++|+.+..+.. .+... .....++
T Consensus 144 -~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~----------------~~~~~------~~~~~~~ 200 (273)
T PRK07825 144 -VPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELI----------------AGTGG------AKGFKNV 200 (273)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhh----------------ccccc------ccCCCCC
Confidence 122377999999999988887654 489999999988765321 00000 0112478
Q ss_pred cHHHHHHHHHHHHcCCCC
Q 013226 328 FVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~~ 345 (447)
+++|+|+.++.++.++..
T Consensus 201 ~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 201 EPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred CHHHHHHHHHHHHhCCCC
Confidence 999999999999987654
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-17 Score=154.22 Aligned_cols=214 Identities=15% Similarity=0.161 Sum_probs=147.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+|+||||+|+||.+++++|+++|++|++++|+.+... .+...+ ...++.++.+|+.+.. +
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN-HVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999988643221 111111 1235777888987653 2
Q ss_pred cCCCEEEEeccCCCCCCccc---ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF---NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~---~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
.++|+||||||......++. .....+++|+.++.++++++.. .+. ++|++||.....
T Consensus 87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~--------------- 151 (255)
T PRK06113 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN--------------- 151 (255)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC---------------
Confidence 35899999999754433322 2445689999999999998753 333 899999976421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
+..+...|+.+|++.+.+++.++.+ .+++++++.||.+..+... ......+.....+..++ ..+
T Consensus 152 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~---~~~~~~~~~~~~~~~~~---------~~~ 218 (255)
T PRK06113 152 -KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALK---SVITPEIEQKMLQHTPI---------RRL 218 (255)
T ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccc---cccCHHHHHHHHhcCCC---------CCC
Confidence 2223367999999999999998765 4899999999998776421 11112222222222111 235
Q ss_pred ccHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 327 QFVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
...+|+++++++++.... .| .+++.++.
T Consensus 219 ~~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg~ 250 (255)
T PRK06113 219 GQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_pred cCHHHHHHHHHHHcCccccCccCCEEEECCCc
Confidence 688999999999997542 24 66666553
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=156.27 Aligned_cols=219 Identities=15% Similarity=0.114 Sum_probs=141.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc---ccc--CCCceEEEeccccccc----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI---HHF--GNPRFELIRHDVVEPI---------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~---~~~--~~~~v~~~~~D~~~~~---------- 176 (447)
.+++|+++||||+|+||.+++++|+++|++|++++++.....+... ..+ ...++.++.+|+.+..
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 3567899999999999999999999999998887765332222111 111 1235778899987652
Q ss_pred --ccCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 --LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||........ .+....+++|+.++..+++++.+. +.++++++|+.....
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~------------ 152 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF------------ 152 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc------------
Confidence 23589999999975332221 135568899999999999988653 236666543322111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
......|+.+|++.|.+++.++.+. ++++++++||.+.++....... ..... ....... .......
T Consensus 153 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~---~~~~~--~~~~~~~--~~~~~~~ 221 (257)
T PRK12744 153 ----TPFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEG---AEAVA--YHKTAAA--LSPFSKT 221 (257)
T ss_pred ----CCCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccc---cchhh--ccccccc--ccccccC
Confidence 0112679999999999999998765 7999999999997764211100 00000 0000000 0111112
Q ss_pred ccccHHHHHHHHHHHHcCCC--CC-cEEecCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDH--VG-PFNLGNP 353 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~--~g-~~~i~~~ 353 (447)
.+.+++|+|+++.+++++.. .| ++++.++
T Consensus 222 ~~~~~~dva~~~~~l~~~~~~~~g~~~~~~gg 253 (257)
T PRK12744 222 GLTDIEDIVPFIRFLVTDGWWITGQTILINGG 253 (257)
T ss_pred CCCCHHHHHHHHHHhhcccceeecceEeecCC
Confidence 47899999999999998532 23 6666654
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-17 Score=152.91 Aligned_cols=212 Identities=20% Similarity=0.170 Sum_probs=144.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
.++++++||||+|+||+++++.|+++|++|+++.++.+.....+.... ...++.++.+|+.+.. +.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999888775432222111111 1246788899987652 23
Q ss_pred CCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 179 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
++|+||||||........ ......+++|+.++.++++++.+. +.++|++||...+. +
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~ 146 (245)
T PRK12937 83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL----------------P 146 (245)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC----------------C
Confidence 689999999975432211 124567899999999999887653 23899999876432 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
......|+.+|...+.+++.++.++ ++++++++||.+.++..... .....+....+..++ ..+.+
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~---~~~~~~~~~~~~~~~---------~~~~~ 214 (245)
T PRK12937 147 LPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG---KSAEQIDQLAGLAPL---------ERLGT 214 (245)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc---CCHHHHHHHHhcCCC---------CCCCC
Confidence 2233779999999999999987653 79999999998876532100 112223333322221 12457
Q ss_pred HHHHHHHHHHHHcCCC---CC-cEEecC
Q 013226 329 VSDLVEGLIRLMEGDH---VG-PFNLGN 352 (447)
Q Consensus 329 v~D~a~ai~~~l~~~~---~g-~~~i~~ 352 (447)
++|+++++++++..+. .| .+++.+
T Consensus 215 ~~d~a~~~~~l~~~~~~~~~g~~~~~~~ 242 (245)
T PRK12937 215 PEEIAAAVAFLAGPDGAWVNGQVLRVNG 242 (245)
T ss_pred HHHHHHHHHHHcCccccCccccEEEeCC
Confidence 8999999999997643 24 555543
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=161.45 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=125.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------L 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------~ 178 (447)
..+|+++||||+|+||.++++.|+++|++|++++|+.....+ ....+ ...++.++.+|+.+... .
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 82 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEA-AAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGK 82 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999986432211 11111 12367888899876531 2
Q ss_pred CCCEEEEeccCCCCCC-----cccChHHHHHHHHHHHHHHHHHHHH----CC---CeEEEEeCccccCCCCC----CC--
Q 013226 179 EVDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKR----VG---ARFLLTSTSEVYGDPLQ----HP-- 240 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~aa~~----~g---~r~v~~SS~~v~g~~~~----~~-- 240 (447)
++|+||||||+..... .....+..+++|+.|+.++++++.. .+ .|||++||...+..... .+
T Consensus 83 ~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~ 162 (322)
T PRK07453 83 PLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAP 162 (322)
T ss_pred CccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCc
Confidence 4899999999753311 1123566899999999998887654 22 39999999875431110 00
Q ss_pred CCCCc-------------CCCCCCCCCCChHHHHHHHHHHHHHHHHhhh----CCcEEEEeeccccCCCC
Q 013226 241 QAETY-------------WGNVNPIGVRSCYDEGKRTAETLTMDYHRGL----GIEARIARIFNTYGPRM 293 (447)
Q Consensus 241 ~~e~~-------------~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~i~~~ivRp~~i~Gp~~ 293 (447)
.+.+. +....+..+...|+.||++.+.+++++++++ |+++++++||+|++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~ 232 (322)
T PRK07453 163 ADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPL 232 (322)
T ss_pred cchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCcc
Confidence 01000 0011234566889999999999998887764 79999999999986543
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-17 Score=157.07 Aligned_cols=208 Identities=17% Similarity=0.124 Sum_probs=142.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEeccccccc------------cc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------~~ 178 (447)
++++++++||||+|+||.++++.|+++|++|++++|+..... .+..... ...+..+.+|+++.. +.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~-~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELA-ALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999998643221 1111111 234556668887652 24
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
.+|+||||||......... ...+.+++|+.|+.++++++.. .+.+||++||...+..
T Consensus 85 ~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 149 (296)
T PRK05872 85 GIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAA--------------- 149 (296)
T ss_pred CCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCC---------------
Confidence 6899999999764333222 2456789999999999988753 2348999999875432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
......|+.+|+..+.+++.++.+ .|+++++++||.+..+........ ...........+.+ ...++
T Consensus 150 -~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~--~~~~~~~~~~~~~p-------~~~~~ 219 (296)
T PRK05872 150 -APGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADAD--LPAFRELRARLPWP-------LRRTT 219 (296)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhcccc--chhHHHHHhhCCCc-------ccCCC
Confidence 112368999999999999998754 589999999999877642110000 01111111111111 12367
Q ss_pred cHHHHHHHHHHHHcCCCC
Q 013226 328 FVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~~ 345 (447)
..+|+|++++.++.+...
T Consensus 220 ~~~~va~~i~~~~~~~~~ 237 (296)
T PRK05872 220 SVEKCAAAFVDGIERRAR 237 (296)
T ss_pred CHHHHHHHHHHHHhcCCC
Confidence 899999999999987553
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=149.62 Aligned_cols=196 Identities=15% Similarity=0.116 Sum_probs=138.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc------cccCCCEEEEe
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP------ILLEVDQIYHL 186 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~ 186 (447)
+++|+++||||+|+||++++++|+++|++|++++|+..... ..++.++.+|+.++ ....+|+||||
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ 74 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL--------SGNFHFLQLDLSDDLEPLFDWVPSVDILCNT 74 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc--------CCcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence 57889999999999999999999999999999998643211 23577888888665 23468999999
Q ss_pred ccCCCC-CCc----ccChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCC
Q 013226 187 ACPASP-VHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRS 256 (447)
Q Consensus 187 Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~ 256 (447)
||.... ... ..+..+.+++|+.++.++++++.. .+. +||++||...+.. .....
T Consensus 75 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~~~~~ 138 (235)
T PRK06550 75 AGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVA----------------GGGGA 138 (235)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccC----------------CCCCc
Confidence 996421 111 123456899999999999988753 333 8999999864321 11126
Q ss_pred hHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHH
Q 013226 257 CYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 333 (447)
Q Consensus 257 ~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 333 (447)
.|+.+|+..+.+++.++.++ |+++++++||.+.++....... ...+........+ ...+...+|+|
T Consensus 139 ~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~~a 207 (235)
T PRK06550 139 AYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFE--PGGLADWVARETP---------IKRWAEPEEVA 207 (235)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccC--chHHHHHHhccCC---------cCCCCCHHHHH
Confidence 79999999999999988764 8999999999998875321100 0111111222111 12367889999
Q ss_pred HHHHHHHcCC
Q 013226 334 EGLIRLMEGD 343 (447)
Q Consensus 334 ~ai~~~l~~~ 343 (447)
+++++++.+.
T Consensus 208 ~~~~~l~s~~ 217 (235)
T PRK06550 208 ELTLFLASGK 217 (235)
T ss_pred HHHHHHcChh
Confidence 9999999754
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-17 Score=150.58 Aligned_cols=183 Identities=19% Similarity=0.153 Sum_probs=133.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQI 183 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~V 183 (447)
+.+++|+||||+|+||++++++|+++|+ +|++++|+.....+ ...++.++.+|+.+.. ...+|+|
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD------LGPRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh------cCCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 4678999999999999999999999999 99999986443221 2236778888887652 2358999
Q ss_pred EEeccC-CCCCCcc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 184 YHLACP-ASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 184 ih~Ag~-~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
||+||. ....... ......+++|+.++.++++++. +.+. +||++||...+.. ..
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~----------------~~ 141 (238)
T PRK08264 78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVN----------------FP 141 (238)
T ss_pred EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccC----------------CC
Confidence 999997 3222221 2245678999999999998865 3444 8999999775432 22
Q ss_pred CCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
....|+.+|...+.+++.++.+. +++++++||+.+.++... .. . ...+..+
T Consensus 142 ~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~----------------~~------~----~~~~~~~ 195 (238)
T PRK08264 142 NLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAA----------------GL------D----APKASPA 195 (238)
T ss_pred CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccccc----------------cC------C----cCCCCHH
Confidence 23789999999999999987654 899999999998765310 00 0 0146677
Q ss_pred HHHHHHHHHHcCC
Q 013226 331 DLVEGLIRLMEGD 343 (447)
Q Consensus 331 D~a~ai~~~l~~~ 343 (447)
|+++.++..+..+
T Consensus 196 ~~a~~~~~~~~~~ 208 (238)
T PRK08264 196 DVARQILDALEAG 208 (238)
T ss_pred HHHHHHHHHHhCC
Confidence 8888888777754
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-17 Score=153.03 Aligned_cols=210 Identities=13% Similarity=0.113 Sum_probs=145.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++++++||||+|+||..+++.|+++|++|++++|+.....+ ..... ...++.++.+|+.+.. ..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEE-AVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 468899999999999999999999999999999986432211 11111 1235778888886642 13
Q ss_pred CCCEEEEeccCCCCCCc-------------ccChHHHHHHHHHHHHHHHHHHH----HC-C-CeEEEEeCccccCCCCCC
Q 013226 179 EVDQIYHLACPASPVHY-------------KFNPVKTIKTNVVGTLNMLGLAK----RV-G-ARFLLTSTSEVYGDPLQH 239 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~-------------~~~~~~~~~~Nv~gt~~ll~aa~----~~-g-~r~v~~SS~~v~g~~~~~ 239 (447)
.+|+||||||....... .......+++|+.++..+++++. +. . .++|++||...++.+
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~--- 158 (253)
T PRK08217 82 QLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNM--- 158 (253)
T ss_pred CCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCC---
Confidence 58999999996432111 11234578899999987776543 22 2 379999998766532
Q ss_pred CCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEE
Q 013226 240 PQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTV 316 (447)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (447)
+...|+.+|++.+.+++.++.+ .+++++.++|+.+.++... .....+........+
T Consensus 159 --------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~----~~~~~~~~~~~~~~~--- 217 (253)
T PRK08217 159 --------------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTA----AMKPEALERLEKMIP--- 217 (253)
T ss_pred --------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccc----ccCHHHHHHHHhcCC---
Confidence 1267999999999999998765 5899999999999887531 111233332322221
Q ss_pred ecCCCeeEccccHHHHHHHHHHHHcCCC-CC-cEEecCC
Q 013226 317 YGDGKQTRSFQFVSDLVEGLIRLMEGDH-VG-PFNLGNP 353 (447)
Q Consensus 317 ~~~~~~~~~~i~v~D~a~ai~~~l~~~~-~g-~~~i~~~ 353 (447)
...+.+++|+|+++..+++... .| ++++.++
T Consensus 218 ------~~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~gg 250 (253)
T PRK08217 218 ------VGRLGEPEEIAHTVRFIIENDYVTGRVLEIDGG 250 (253)
T ss_pred ------cCCCcCHHHHHHHHHHHHcCCCcCCcEEEeCCC
Confidence 1236788999999999997643 34 7777664
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.6e-17 Score=153.35 Aligned_cols=200 Identities=18% Similarity=0.067 Sum_probs=138.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------ccCCCE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------LLEVDQ 182 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~~~d~ 182 (447)
|+|+||||+|+||++++++|+++|++|++++|+.+...+..... ....++.++.+|+.+.. ..++|+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 57999999999999999999999999999998644322111110 11235778888987652 136899
Q ss_pred EEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 183 IYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
||||||.......... ..+.+++|+.++.+++++ +++.+. +||++||...+.. ..
T Consensus 81 lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~----------------~~ 144 (270)
T PRK05650 81 IVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQ----------------GP 144 (270)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCC----------------CC
Confidence 9999997654333332 344788999988887666 455565 9999999875422 22
Q ss_pred CCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCC--chHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
....|+.+|++.+.+.+.++.+. |+++++++||.+.++....... ......+..... ..+++
T Consensus 145 ~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 211 (270)
T PRK05650 145 AMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLE-------------KSPIT 211 (270)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHHHhh-------------cCCCC
Confidence 23789999999999999988764 8999999999998775321110 001111111111 23578
Q ss_pred HHHHHHHHHHHHcCCC
Q 013226 329 VSDLVEGLIRLMEGDH 344 (447)
Q Consensus 329 v~D~a~ai~~~l~~~~ 344 (447)
++|+|+.++.+++++.
T Consensus 212 ~~~vA~~i~~~l~~~~ 227 (270)
T PRK05650 212 AADIADYIYQQVAKGE 227 (270)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999998754
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-17 Score=154.14 Aligned_cols=203 Identities=14% Similarity=0.058 Sum_probs=135.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc---------------
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI--------------- 176 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~--------------- 176 (447)
++|+++||||+|+||.+++++|+++|++|++++++.....+...... ....+..+..|+.+..
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN 82 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999999999999887543222111111111 1224556677775531
Q ss_pred -c--cCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 -L--LEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 -~--~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
. .++|+||||||........+. ...++++|+.++..+++++.+. ..+||++||...+..
T Consensus 83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~----------- 151 (252)
T PRK12747 83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRIS----------- 151 (252)
T ss_pred hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccC-----------
Confidence 1 269999999997533322222 3567889999999999887653 239999999875421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.||++.+.+++.++.++ |+++++|+||.|.++....... ........... ...
T Consensus 152 -----~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~---~~~~~~~~~~~--------~~~ 215 (252)
T PRK12747 152 -----LPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS---DPMMKQYATTI--------SAF 215 (252)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc---CHHHHHHHHhc--------Ccc
Confidence 1123679999999999999988754 8999999999998874210000 00111111100 011
Q ss_pred EccccHHHHHHHHHHHHcCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~ 343 (447)
..+.+++|+|+++.+++...
T Consensus 216 ~~~~~~~dva~~~~~l~s~~ 235 (252)
T PRK12747 216 NRLGEVEDIADTAAFLASPD 235 (252)
T ss_pred cCCCCHHHHHHHHHHHcCcc
Confidence 24678999999999998754
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=155.41 Aligned_cols=205 Identities=16% Similarity=0.177 Sum_probs=139.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+... .+...+ ...++.++.+|+.+.. +
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE-AVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999998643221 111111 1235778889987652 2
Q ss_pred cCCCEEEEeccCCCCCCc-------------------ccChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCcccc
Q 013226 178 LEVDQIYHLACPASPVHY-------------------KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVY 233 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~-------------------~~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~ 233 (447)
.++|+||||||...+... ..+....+++|+.++..+++++ ++.+. +||++||...+
T Consensus 86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~ 165 (278)
T PRK08277 86 GPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAF 165 (278)
T ss_pred CCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhc
Confidence 368999999996533211 1124567899999988766554 34443 89999998765
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCcc---CCCchHHHHHHH
Q 013226 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCI---DDGRVVSNFVAQ 307 (447)
Q Consensus 234 g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~---~~~~~~~~~~~~ 307 (447)
. +......|+.+|++.+.+++.++.++ ++++.+|+||.+.++.... ............
T Consensus 166 ~----------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~ 229 (278)
T PRK08277 166 T----------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANK 229 (278)
T ss_pred C----------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHH
Confidence 3 22223679999999999999998765 8999999999998874210 000000111111
Q ss_pred HHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcC
Q 013226 308 ALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
.....+ ..-+...+|+|+++++++..
T Consensus 230 ~~~~~p---------~~r~~~~~dva~~~~~l~s~ 255 (278)
T PRK08277 230 ILAHTP---------MGRFGKPEELLGTLLWLADE 255 (278)
T ss_pred HhccCC---------ccCCCCHHHHHHHHHHHcCc
Confidence 111111 12356789999999999886
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-17 Score=154.03 Aligned_cols=206 Identities=13% Similarity=0.014 Sum_probs=139.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc----CCCceEEEeccccccc-----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF----GNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~----------- 176 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+... .....+ ...++.++.+|+.++.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAE-RAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999998643222 111111 1346788899997763
Q ss_pred -ccCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 -LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
..++|+||||||........ .+....+++|+.++.++++++.. .+. +||++||...+..
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 151 (260)
T PRK07063 83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKI----------- 151 (260)
T ss_pred HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccC-----------
Confidence 23699999999975332211 23456789999999888887643 343 8999999864321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCC--chHHHHHHHHHhCCCeEEecCCC
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
......|+.+|++.+.+++.++.++ |+++.+|+||.+-.+....... .-............+.
T Consensus 152 -----~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------- 219 (260)
T PRK07063 152 -----IPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQPM------- 219 (260)
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCCC-------
Confidence 1123679999999999999998764 7999999999987653210000 0000011111111111
Q ss_pred eeEccccHHHHHHHHHHHHcCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.-+...+|+|+++++++.+.
T Consensus 220 --~r~~~~~~va~~~~fl~s~~ 239 (260)
T PRK07063 220 --KRIGRPEEVAMTAVFLASDE 239 (260)
T ss_pred --CCCCCHHHHHHHHHHHcCcc
Confidence 12567899999999998764
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-17 Score=153.72 Aligned_cols=212 Identities=16% Similarity=0.092 Sum_probs=143.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++++++||||+|+||.+++++|+++|++|+++.++.....+...... ...++.++.+|+.+.. +..
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35789999999999999999999999999988764332222211111 1236888999987753 235
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC----C--CeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----G--ARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~----g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+|+||||||........ ....+.+++|+.++.++++++.+. + .+||++||....
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~---------------- 144 (256)
T PRK12743 81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH---------------- 144 (256)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc----------------
Confidence 89999999975432222 234568999999999999876542 2 389999997521
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
.+..+...|+.+|++.+.+++.++.+ .+++++.|+||.+++|...... .......... .+ ...+
T Consensus 145 ~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~----~~~~~~~~~~--~~-------~~~~ 211 (256)
T PRK12743 145 TPLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD----SDVKPDSRPG--IP-------LGRP 211 (256)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC----hHHHHHHHhc--CC-------CCCC
Confidence 12233478999999999999998765 4899999999999987532111 1111111111 11 1124
Q ss_pred ccHHHHHHHHHHHHcCCC---CCcEEecCCC
Q 013226 327 QFVSDLVEGLIRLMEGDH---VGPFNLGNPG 354 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~---~g~~~i~~~~ 354 (447)
.+.+|+++++.+++.... .|.+...+++
T Consensus 212 ~~~~dva~~~~~l~~~~~~~~~G~~~~~dgg 242 (256)
T PRK12743 212 GDTHEIASLVAWLCSEGASYTTGQSLIVDGG 242 (256)
T ss_pred CCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 588999999999987542 3544443333
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=152.64 Aligned_cols=200 Identities=14% Similarity=0.094 Sum_probs=136.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----c---cCCCEEEEe
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L---LEVDQIYHL 186 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~---~~~d~Vih~ 186 (447)
+|+++||||+|+||+++++.|+++ ++|++++|+.... +.+... ...+.++.+|+.+.. + .++|+|||+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~-~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 78 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERL-DELAAE--LPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHN 78 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHH-HHHHHH--hccceEEecCCCCHHHHHHHHHhcCCCCEEEEC
Confidence 578999999999999999999999 9999999864321 111111 125778889987652 2 259999999
Q ss_pred ccCCCCCCccc----ChHHHHHHHHHHHH----HHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChH
Q 013226 187 ACPASPVHYKF----NPVKTIKTNVVGTL----NMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCY 258 (447)
Q Consensus 187 Ag~~~~~~~~~----~~~~~~~~Nv~gt~----~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y 258 (447)
||......... ...+.+++|+.+.. ++++++++.+.++|++||...++. ..+...|
T Consensus 79 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~----------------~~~~~~y 142 (227)
T PRK08219 79 AGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRA----------------NPGWGSY 142 (227)
T ss_pred CCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCc----------------CCCCchH
Confidence 99754322211 23456889999854 445555555569999999876532 1123679
Q ss_pred HHHHHHHHHHHHHHHhhh-C-CcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHH
Q 013226 259 DEGKRTAETLTMDYHRGL-G-IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~~-~-i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai 336 (447)
+.+|...+.+++.++.+. + +++..++||.+.++.. ..+... .+. . + ....+++++|+|+++
T Consensus 143 ~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~--------~~~~~~--~~~--~-~----~~~~~~~~~dva~~~ 205 (227)
T PRK08219 143 AASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQ--------RGLVAQ--EGG--E-Y----DPERYLRPETVAKAV 205 (227)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHh--------hhhhhh--hcc--c-c----CCCCCCCHHHHHHHH
Confidence 999999999998886542 4 8999999987765431 111110 011 0 1 123579999999999
Q ss_pred HHHHcCCCCC-cEEec
Q 013226 337 IRLMEGDHVG-PFNLG 351 (447)
Q Consensus 337 ~~~l~~~~~g-~~~i~ 351 (447)
+.+++++..+ ++++.
T Consensus 206 ~~~l~~~~~~~~~~~~ 221 (227)
T PRK08219 206 RFAVDAPPDAHITEVV 221 (227)
T ss_pred HHHHcCCCCCccceEE
Confidence 9999887653 66654
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=151.64 Aligned_cols=204 Identities=14% Similarity=0.050 Sum_probs=140.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC--CCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG--NPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~------------~ 177 (447)
++.+|++|||||+|+||++++++|+++|++|++++|+.....+ ...... ..++.++.+|+.+.. +
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEL-AVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHH-HHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 3578899999999999999999999999999999986432211 111111 235677888887653 2
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
..+|+||||||........ .+..+.+++|+.++..+++++.+ .+. +||++||.....
T Consensus 85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------------- 150 (254)
T PRK08085 85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSEL-------------- 150 (254)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhcc--------------
Confidence 3589999999975432222 22456899999999888887654 333 899999975321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.+|++.+.+++.++.+ .|+++++|+||.+.++........ ..+........+ ...
T Consensus 151 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~--~~~~~~~~~~~p---------~~~ 217 (254)
T PRK08085 151 --GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVED--EAFTAWLCKRTP---------AAR 217 (254)
T ss_pred --CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccC--HHHHHHHHhcCC---------CCC
Confidence 1112367999999999999999875 489999999999988753210000 112122222111 123
Q ss_pred cccHHHHHHHHHHHHcCC
Q 013226 326 FQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~ 343 (447)
+...+|++.++++++...
T Consensus 218 ~~~~~~va~~~~~l~~~~ 235 (254)
T PRK08085 218 WGDPQELIGAAVFLSSKA 235 (254)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 678899999999999754
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.9e-17 Score=151.11 Aligned_cols=212 Identities=19% Similarity=0.161 Sum_probs=146.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------L 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------~ 178 (447)
+++|+++||||+|+||+++++.|+++|++|++++|+.+.... ..... ...++.++.+|+.+... .
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARE-LAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999886432221 11111 12367888999876532 4
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......... .....++.|+.++.++++++.+ .+. +||++||...+..
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 149 (250)
T PRK12939 84 GLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWG-------------- 149 (250)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccC--------------
Confidence 6899999999754322221 2445788999999999888753 223 8999999764321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.+|+..+.+++.++.+ .++++++++||.+.++....... ..+........ ....+
T Consensus 150 --~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~---~~~~~~~~~~~---------~~~~~ 215 (250)
T PRK12939 150 --APKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA---DERHAYYLKGR---------ALERL 215 (250)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC---hHHHHHHHhcC---------CCCCC
Confidence 112367999999999999988754 48999999999988765321111 12222222221 22347
Q ss_pred ccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 327 QFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
++++|+|++++.++.+.. .| .+.+.++
T Consensus 216 ~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg 246 (250)
T PRK12939 216 QVPDDVAGAVLFLLSDAARFVTGQLLPVNGG 246 (250)
T ss_pred CCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 899999999999997642 34 5555544
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-17 Score=154.52 Aligned_cols=199 Identities=15% Similarity=0.125 Sum_probs=134.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCCCEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEVDQI 183 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~V 183 (447)
|+|+||||+|+||.++++.|+++|++|++++|+.+.. +.+.... ..++.++.+|+.+.. +.++|+|
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~v 78 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERL-QELKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVL 78 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHh-ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 6799999999999999999999999999999864322 1111111 235778888887652 1369999
Q ss_pred EEeccCCCCC-C----cccChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 184 YHLACPASPV-H----YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 184 ih~Ag~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
||+||..... . ...+..+.+++|+.++..+++++ ++.+. ++|++||...+. +..
T Consensus 79 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~ 142 (248)
T PRK10538 79 VNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------------PYA 142 (248)
T ss_pred EECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCC----------------CCC
Confidence 9999964211 1 11234568999999976666654 44555 899999976431 122
Q ss_pred CCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
....|+.+|...+.+++.++.+. ++++++++||.+.|+..... .+... ...... .+ . ...++..+
T Consensus 143 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~--~~~~~-~~~~~~-----~~-~---~~~~~~~~ 210 (248)
T PRK10538 143 GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNV--RFKGD-DGKAEK-----TY-Q---NTVALTPE 210 (248)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchh--hccCc-HHHHHh-----hc-c---ccCCCCHH
Confidence 23689999999999999987654 79999999999987642100 00000 000000 00 0 11357899
Q ss_pred HHHHHHHHHHcCCC
Q 013226 331 DLVEGLIRLMEGDH 344 (447)
Q Consensus 331 D~a~ai~~~l~~~~ 344 (447)
|+|++++.++..+.
T Consensus 211 dvA~~~~~l~~~~~ 224 (248)
T PRK10538 211 DVSEAVWWVATLPA 224 (248)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999997653
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.3e-17 Score=153.25 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=118.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC--CCceEEEeccccccc------------ccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG--NPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+|+++||||+|+||.++++.|+++|++|++++|+..... ....... ..++.++.+|+.++. +.++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQ-AAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 678999999999999999999999999999998643211 1111111 236778899997763 2358
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccc-cCCCCCCCCCCCcCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEV-YGDPLQHPQAETYWGNV 249 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v-~g~~~~~~~~e~~~~~~ 249 (447)
|+||||||......... .....+++|+.++..+++++.+ .+ .++|++||... ++.+
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 147 (256)
T PRK08643 81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNP------------- 147 (256)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCC-------------
Confidence 99999999754322222 2456789999998877776643 22 48999999763 3221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCC
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPR 292 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~ 292 (447)
....|+.+|+..+.+++.++.+ .|+++++|+||.+.+|.
T Consensus 148 ----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~ 189 (256)
T PRK08643 148 ----ELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPM 189 (256)
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChh
Confidence 1367999999999999998764 48999999999998764
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-17 Score=153.59 Aligned_cols=203 Identities=13% Similarity=0.085 Sum_probs=139.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++++++||||+|+||.+++++|+++|++|++++|+.+... .+.... ...++.++.+|+.+.. +.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLD-EVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999643221 111111 1235788889987763 23
Q ss_pred CCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH-----CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR-----VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~-----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
++|+|||+||........ .+....+++|+.++.++++++.+ .+. +||++||.....
T Consensus 87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~-------------- 152 (263)
T PRK07814 87 RLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL-------------- 152 (263)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC--------------
Confidence 689999999965433222 23556899999999999999864 333 899999965321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
+......|+.+|...+.+++.++.+. +++++.++||.+..+....-... ..+........+ ...+
T Consensus 153 --~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~---------~~~~ 219 (263)
T PRK07814 153 --AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAAN--DELRAPMEKATP---------LRRL 219 (263)
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCC--HHHHHHHHhcCC---------CCCC
Confidence 11223689999999999999988764 58999999998876532100000 111111111111 1124
Q ss_pred ccHHHHHHHHHHHHcCC
Q 013226 327 QFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~ 343 (447)
..++|+|+++++++.+.
T Consensus 220 ~~~~~va~~~~~l~~~~ 236 (263)
T PRK07814 220 GDPEDIAAAAVYLASPA 236 (263)
T ss_pred cCHHHHHHHHHHHcCcc
Confidence 68899999999998753
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-17 Score=151.43 Aligned_cols=200 Identities=17% Similarity=0.122 Sum_probs=132.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEVD 181 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d 181 (447)
++++||||+|+||++++++|+++|++|+++.++......+..... ...++.++.+|+.++. ..++|
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~id 81 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLA 81 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCCC
Confidence 579999999999999999999999999875432222111111111 1235778889987663 23589
Q ss_pred EEEEeccCCCCCC-cc----cChHHHHHHHHHHHHHHHHHHHHC--------CCeEEEEeCccc-cCCCCCCCCCCCcCC
Q 013226 182 QIYHLACPASPVH-YK----FNPVKTIKTNVVGTLNMLGLAKRV--------GARFLLTSTSEV-YGDPLQHPQAETYWG 247 (447)
Q Consensus 182 ~Vih~Ag~~~~~~-~~----~~~~~~~~~Nv~gt~~ll~aa~~~--------g~r~v~~SS~~v-~g~~~~~~~~e~~~~ 247 (447)
+|||+||...... .. .+....+++|+.++.++++++... +.+||++||... ++.+.
T Consensus 82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~---------- 151 (247)
T PRK09730 82 ALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPG---------- 151 (247)
T ss_pred EEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCC----------
Confidence 9999999643221 11 123468899999998887765432 236999999764 33210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
....|+.+|+..+.+++.++.+ .+++++++||+.+|+|...... . ...........++.
T Consensus 152 ------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~--~-~~~~~~~~~~~~~~--------- 213 (247)
T PRK09730 152 ------EYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGG--E-PGRVDRVKSNIPMQ--------- 213 (247)
T ss_pred ------cccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCC--C-HHHHHHHHhcCCCC---------
Confidence 1145999999999999988765 4899999999999998642111 1 12222222222211
Q ss_pred ccccHHHHHHHHHHHHcCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~ 343 (447)
-..+++|+|+++++++.++
T Consensus 214 ~~~~~~dva~~~~~~~~~~ 232 (247)
T PRK09730 214 RGGQPEEVAQAIVWLLSDK 232 (247)
T ss_pred CCcCHHHHHHHHHhhcChh
Confidence 1237899999999998764
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-17 Score=159.50 Aligned_cols=207 Identities=14% Similarity=0.149 Sum_probs=141.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++++|+||||+|+||++++++|+++|++|++++|+..... ...... ...++.++.+|+.+.. +
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~-~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLE-ALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 356789999999999999999999999999999998643221 111111 1235778889987763 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
..+|++|||||......... .....+++|+.|+.+++++ +++.+. +||++||...+..
T Consensus 84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~------------- 150 (334)
T PRK07109 84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRS------------- 150 (334)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccC-------------
Confidence 36999999999754332222 2445788998887665554 445544 8999999886632
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh-----CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL-----GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.+|+..+.+++.++.+. ++++++|+||.+.+|.. . .......... ...
T Consensus 151 ---~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~--------~-~~~~~~~~~~-------~~~ 211 (334)
T PRK07109 151 ---IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQF--------D-WARSRLPVEP-------QPV 211 (334)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchh--------h-hhhhhccccc-------cCC
Confidence 1123689999999999998887553 69999999999877632 1 1111111110 111
Q ss_pred EccccHHHHHHHHHHHHcCCCCCcEEecC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDHVGPFNLGN 352 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~~g~~~i~~ 352 (447)
..++.++|+|++++++++++. ..++++.
T Consensus 212 ~~~~~pe~vA~~i~~~~~~~~-~~~~vg~ 239 (334)
T PRK07109 212 PPIYQPEVVADAILYAAEHPR-RELWVGG 239 (334)
T ss_pred CCCCCHHHHHHHHHHHHhCCC-cEEEeCc
Confidence 235789999999999998763 3455543
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=153.10 Aligned_cols=204 Identities=12% Similarity=0.066 Sum_probs=139.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|............ ...++.++.+|+++.. +.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEA-LGRKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999999887532111111111 1235778889997763 235
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+|++|||||........ .+...++++|+.++..+.+++.+ .+ .+||++||...+...
T Consensus 84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------- 150 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG------------- 150 (251)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC-------------
Confidence 89999999975433222 23556889999998888877543 33 389999998754321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
.....|+.+|++.+.+++.++.+ .|+++.+|+||.+-.+........ .......... ++ ...+
T Consensus 151 ---~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~--~~~~~~~~~~--~p-------~~~~ 216 (251)
T PRK12481 151 ---IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRAD--TARNEAILER--IP-------ASRW 216 (251)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccC--hHHHHHHHhc--CC-------CCCC
Confidence 11257999999999999998875 489999999999876532100000 1111112211 11 1135
Q ss_pred ccHHHHHHHHHHHHcCC
Q 013226 327 QFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~ 343 (447)
...+|+|+++++++...
T Consensus 217 ~~peeva~~~~~L~s~~ 233 (251)
T PRK12481 217 GTPDDLAGPAIFLSSSA 233 (251)
T ss_pred cCHHHHHHHHHHHhCcc
Confidence 78899999999999754
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=160.95 Aligned_cols=217 Identities=13% Similarity=0.046 Sum_probs=140.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+|+||||+|+||.+++++|+++|++|++++|+.+...+ ....+ ..+.++.+|+.+.. ..+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~-~~~~l--~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~ 99 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVARE-ALAGI--DGVEVVMLDLADLESVRAFAERFLDSGRR 99 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh--hhCeEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 4578999999999999999999999999999999986432221 11111 23778889987653 245
Q ss_pred CCEEEEeccCCCCCC--cccChHHHHHHHHHHHHHHHHH----HHHCC-CeEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 180 VDQIYHLACPASPVH--YKFNPVKTIKTNVVGTLNMLGL----AKRVG-ARFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~--~~~~~~~~~~~Nv~gt~~ll~a----a~~~g-~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+|+||||||...... .....+..+++|+.|+..++++ +++.+ .+||++||....... ...+......+.
T Consensus 100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~----~~~~~~~~~~~~ 175 (315)
T PRK06196 100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSP----IRWDDPHFTRGY 175 (315)
T ss_pred CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCC----CCccccCccCCC
Confidence 899999999754321 1223566889999997666654 44554 499999997632211 111100001233
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
.+...|+.||++.+.+++.++.+ .|+++++++||.+.+|........ .............++ . ..+..+
T Consensus 176 ~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~~~~~~~~~~~-~-----~~~~~~ 247 (315)
T PRK06196 176 DKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPRE--EQVALGWVDEHGNPI-D-----PGFKTP 247 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChh--hhhhhhhhhhhhhhh-h-----hhcCCH
Confidence 44578999999999999988764 489999999999998853211000 000000011000000 0 024577
Q ss_pred HHHHHHHHHHHcCC
Q 013226 330 SDLVEGLIRLMEGD 343 (447)
Q Consensus 330 ~D~a~ai~~~l~~~ 343 (447)
+|+|..+++++..+
T Consensus 248 ~~~a~~~~~l~~~~ 261 (315)
T PRK06196 248 AQGAATQVWAATSP 261 (315)
T ss_pred hHHHHHHHHHhcCC
Confidence 99999999998654
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.6e-17 Score=154.27 Aligned_cols=208 Identities=15% Similarity=0.105 Sum_probs=137.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++|+++||||+|+||++++++|+++|++|++++|+ +.. +.....+ ...++..+.+|+.+.. +.
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAV-SETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHH-HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 578899999999999999999999999999999986 322 1111111 1235788889987652 23
Q ss_pred CCCEEEEeccCCCC-CCccc----ChHHHHHHHHHHHHHHHHHHH----HCCCeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASP-VHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~-~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
.+|++|||||.... ..... .....+++|+.++..+++++. +.+.++|++||...+..
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 147 (272)
T PRK08589 82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAA-------------- 147 (272)
T ss_pred CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcCC--------------
Confidence 58999999997532 12211 234578899999877777643 34459999999875421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.+|++.+.+++.++.++ |+++++|+||.|..+.........-..+. ..+....... . ....+
T Consensus 148 --~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~-~~~~~~~~~~--~--~~~~~ 220 (272)
T PRK08589 148 --DLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAG-KTFRENQKWM--T--PLGRL 220 (272)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHH-HHHhhhhhcc--C--CCCCC
Confidence 1123679999999999999998754 79999999999887642100000000000 0000000000 0 11125
Q ss_pred ccHHHHHHHHHHHHcCC
Q 013226 327 QFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~ 343 (447)
..++|+|+++++++.+.
T Consensus 221 ~~~~~va~~~~~l~s~~ 237 (272)
T PRK08589 221 GKPEEVAKLVVFLASDD 237 (272)
T ss_pred cCHHHHHHHHHHHcCch
Confidence 68899999999998754
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-17 Score=150.01 Aligned_cols=211 Identities=13% Similarity=0.094 Sum_probs=143.3
Q ss_pred EEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc--------ccCCCEEEEeccC
Q 013226 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI--------LLEVDQIYHLACP 189 (447)
Q Consensus 119 lVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~--------~~~~d~Vih~Ag~ 189 (447)
+||||+|+||++++++|+++|++|++++|+..... ...... ...++.++.+|+.++. ..++|++||+||.
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLA-AAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 69999999999999999999999999998643211 111111 1245788899987763 2358999999997
Q ss_pred CCCCCcc----cChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHH
Q 013226 190 ASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRT 264 (447)
Q Consensus 190 ~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~ 264 (447)
.....+. .+....+++|+.++.+++++....+. +||++||...+.. ..+.+.|+.+|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~~----------------~~~~~~Y~~sK~a 143 (230)
T PRK07041 80 TPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVRP----------------SASGVLQGAINAA 143 (230)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcCC----------------CCcchHHHHHHHH
Confidence 5433222 23556889999999999996655444 9999999876532 1233789999999
Q ss_pred HHHHHHHHHhhh-CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 265 AETLTMDYHRGL-GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 265 ~E~~~~~~~~~~-~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.+.+++.++.+. ++++++++|+.+-++............++.......+. ..+...+|+|++++.++.+.
T Consensus 144 ~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~dva~~~~~l~~~~ 214 (230)
T PRK07041 144 LEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPA---------RRVGQPEDVANAILFLAANG 214 (230)
T ss_pred HHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHhcCC
Confidence 999999988764 68999999998866532100000001122222221111 12456799999999999865
Q ss_pred C-CC-cEEecCCCc
Q 013226 344 H-VG-PFNLGNPGE 355 (447)
Q Consensus 344 ~-~g-~~~i~~~~~ 355 (447)
. .| .|++.++.+
T Consensus 215 ~~~G~~~~v~gg~~ 228 (230)
T PRK07041 215 FTTGSTVLVDGGHA 228 (230)
T ss_pred CcCCcEEEeCCCee
Confidence 3 24 778776654
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.8e-17 Score=152.32 Aligned_cols=203 Identities=14% Similarity=0.062 Sum_probs=139.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+.+|+|+||||+|+||++++++|+++|++|++++|+..... .+...+ ...++.++.+|+.+.. .
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLK-ELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999998643221 111111 1235778888886642 2
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----C---------CCeEEEEeCccccCCCCCCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----V---------GARFLLTSTSEVYGDPLQHP 240 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~---------g~r~v~~SS~~v~g~~~~~~ 240 (447)
..+|+||||||........ .+....+++|+.++.++++++.. . +.++|++||...+.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------ 158 (258)
T PRK06949 85 GTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR------ 158 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC------
Confidence 3589999999975432222 23556789999999998887642 1 13899999987542
Q ss_pred CCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEe
Q 013226 241 QAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY 317 (447)
Q Consensus 241 ~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (447)
+......|+.+|++.+.+++.++.+ .++++++++||.+++|.... .+........... ++
T Consensus 159 ----------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~---~~~~~~~~~~~~~--~~-- 221 (258)
T PRK06949 159 ----------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHH---HWETEQGQKLVSM--LP-- 221 (258)
T ss_pred ----------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchh---ccChHHHHHHHhc--CC--
Confidence 1122378999999999999998765 48999999999999875321 0101111111111 11
Q ss_pred cCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 318 GDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 318 ~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
...+...+|+++++.+++...
T Consensus 222 -----~~~~~~p~~~~~~~~~l~~~~ 242 (258)
T PRK06949 222 -----RKRVGKPEDLDGLLLLLAADE 242 (258)
T ss_pred -----CCCCcCHHHHHHHHHHHhChh
Confidence 113556799999999998754
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-17 Score=152.68 Aligned_cols=204 Identities=11% Similarity=0.085 Sum_probs=142.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc----cCCCceEEEeccccccc-----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH----FGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~----~~~~~v~~~~~D~~~~~----------- 176 (447)
.+.+|+++||||+|+||++++++|+++|++|++++|+.+... ..... ....++.++.+|+.+..
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALA-QARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999998643322 11111 11346788889987642
Q ss_pred -ccCCCEEEEeccCCCCCCc----ccChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 -LLEVDQIYHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|+|||+||....... ..+....+++|+.++.++++++. +.+. +||++||...+..
T Consensus 85 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~----------- 153 (257)
T PRK09242 85 HWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTH----------- 153 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCC-----------
Confidence 3468999999997432211 12355688999999999988864 3444 8999999875432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.+|...+.+++.++.+ .+++++.++||.+.+|....... ...+........++.
T Consensus 154 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~--~~~~~~~~~~~~~~~-------- 218 (257)
T PRK09242 154 -----VRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLS--DPDYYEQVIERTPMR-------- 218 (257)
T ss_pred -----CCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccC--ChHHHHHHHhcCCCC--------
Confidence 122367999999999999998765 48999999999998875321100 112222222222211
Q ss_pred EccccHHHHHHHHHHHHcCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~ 343 (447)
-+...+|++.++..++...
T Consensus 219 -~~~~~~~va~~~~~l~~~~ 237 (257)
T PRK09242 219 -RVGEPEEVAAAVAFLCMPA 237 (257)
T ss_pred -CCcCHHHHHHHHHHHhCcc
Confidence 2446789999999998753
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=148.38 Aligned_cols=199 Identities=14% Similarity=0.077 Sum_probs=135.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQIY 184 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~Vi 184 (447)
+++|+|+||||+|+||++++++|+++|++|+++.++.....+++... ..+.++..|+.+.. ..++|+||
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~li 80 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQE---TGATAVQTDSADRDAVIDVVRKSGALDILV 80 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHH---hCCeEEecCCCCHHHHHHHHHHhCCCcEEE
Confidence 56889999999999999999999999999988766432222222111 13566777876542 23589999
Q ss_pred EeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCCh
Q 013226 185 HLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSC 257 (447)
Q Consensus 185 h~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~ 257 (447)
||||........ .+....+++|+.++.+++..+.+. +.++|++||..... .+..+...
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------------~~~~~~~~ 145 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR---------------MPVAGMAA 145 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc---------------CCCCCCcc
Confidence 999975332211 235668999999999997666543 23899999975311 12223478
Q ss_pred HHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 334 (447)
|+.+|++.+.+++.++.+ .++++++|+||.+..+.... .. ..........+ ...+...+|+++
T Consensus 146 Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~--~~---~~~~~~~~~~~---------~~~~~~p~~~a~ 211 (237)
T PRK12742 146 YAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPA--NG---PMKDMMHSFMA---------IKRHGRPEEVAG 211 (237)
T ss_pred hHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcccc--cc---HHHHHHHhcCC---------CCCCCCHHHHHH
Confidence 999999999999998765 47999999999998764211 10 11111111111 113568899999
Q ss_pred HHHHHHcCC
Q 013226 335 GLIRLMEGD 343 (447)
Q Consensus 335 ai~~~l~~~ 343 (447)
++.+++.+.
T Consensus 212 ~~~~l~s~~ 220 (237)
T PRK12742 212 MVAWLAGPE 220 (237)
T ss_pred HHHHHcCcc
Confidence 999998764
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=149.97 Aligned_cols=213 Identities=13% Similarity=0.135 Sum_probs=144.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+|+||||+|+||.+++++|+++|++|++++|+ . ..+.+.+.. ...++.++.+|+.+.. .
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-T-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-c-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999986 2 111211111 1235788899997753 1
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
..+|++|||||......... +.+..+++|+.++..+++++. +.+. ++|++||...+..
T Consensus 90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 156 (258)
T PRK06935 90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQG------------- 156 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccC-------------
Confidence 35899999999754322222 244678999999888877654 3444 8999999875422
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.+|++.+.+++.++++. |+++++|+||.+..+........ .......... ++ ...
T Consensus 157 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~--~~-------~~~ 222 (258)
T PRK06935 157 ---GKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRAD--KNRNDEILKR--IP-------AGR 222 (258)
T ss_pred ---CCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccC--hHHHHHHHhc--CC-------CCC
Confidence 1123679999999999999998754 89999999999887642110000 1111111111 11 123
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+...+|++..+++++.+.. .| ++.+.++
T Consensus 223 ~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 254 (258)
T PRK06935 223 WGEPDDLMGAAVFLASRASDYVNGHILAVDGG 254 (258)
T ss_pred CCCHHHHHHHHHHHcChhhcCCCCCEEEECCC
Confidence 6778999999999987543 34 4555443
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=150.83 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=134.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCcccccccc---CCCceEEEeccccccc-----c------c
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI-----L------L 178 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~-----~------~ 178 (447)
++++|+||||+|+||++++++|+++| ++|++++|+.+...+...+.+ ...++.++.+|+.+.. + .
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 66789999999999999999999995 899999997554222111111 2236788899987643 1 3
Q ss_pred CCCEEEEeccCCCCCC-cccCh---HHHHHHHHHHHHH----HHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVH-YKFNP---VKTIKTNVVGTLN----MLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~-~~~~~---~~~~~~Nv~gt~~----ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|++|||+|...... ...+. .+.+++|+.++.. ++..+++.+. +||++||...+.
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~--------------- 151 (253)
T PRK07904 87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER--------------- 151 (253)
T ss_pred CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC---------------
Confidence 6999999999753321 11111 2468999999876 4556666665 999999976321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
+......|+.||++.+.+.+.++.+ .++++++++||.+..+.. . .... . ...
T Consensus 152 -~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~------------~---~~~~-----~----~~~ 206 (253)
T PRK07904 152 -VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMS------------A---HAKE-----A----PLT 206 (253)
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchh------------c---cCCC-----C----CCC
Confidence 1112357999999999888887543 589999999999986421 0 0000 0 124
Q ss_pred ccHHHHHHHHHHHHcCCCC
Q 013226 327 QFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~~ 345 (447)
+..+|+|+.++.+++++..
T Consensus 207 ~~~~~~A~~i~~~~~~~~~ 225 (253)
T PRK07904 207 VDKEDVAKLAVTAVAKGKE 225 (253)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 6889999999999987655
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-17 Score=152.89 Aligned_cols=213 Identities=17% Similarity=0.149 Sum_probs=142.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++|+++||||+|+||++++++|+++|++|++++|+.... +++.... ..++.++.+|+.+.. +..+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNG-AAVAASL-GERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHh-CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 5688999999999999999999999999999999864322 1121111 235778889997763 2358
Q ss_pred CEEEEeccCCCCCCcc---cChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCcccc-CCCCCCCCCCCcCCCCCCC
Q 013226 181 DQIYHLACPASPVHYK---FNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVY-GDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~---~~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~-g~~~~~~~~e~~~~~~~~~ 252 (447)
|+||||||.......+ ....+.+++|+.++..+++++.. .+.++|++||...+ +.
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~----------------- 144 (261)
T PRK08265 82 DILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQ----------------- 144 (261)
T ss_pred CEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC-----------------
Confidence 9999999975332222 23456889999999998887653 22489999997632 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
.....|+.+|+..+.+++.++.++ |+++++|+||.+..+......... ......... ... ....+...
T Consensus 145 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~-~~~~~~~~~-~~~-------p~~r~~~p 215 (261)
T PRK08265 145 TGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGD-RAKADRVAA-PFH-------LLGRVGDP 215 (261)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccc-hhHHHHhhc-ccC-------CCCCccCH
Confidence 113679999999999999988654 899999999988765321000000 000000100 000 11125678
Q ss_pred HHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 330 SDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+|+|+++++++.... .| .+.+.++
T Consensus 216 ~dva~~~~~l~s~~~~~~tG~~i~vdgg 243 (261)
T PRK08265 216 EEVAQVVAFLCSDAASFVTGADYAVDGG 243 (261)
T ss_pred HHHHHHHHHHcCccccCccCcEEEECCC
Confidence 999999999997542 34 4555443
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=150.78 Aligned_cols=205 Identities=13% Similarity=0.044 Sum_probs=138.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+... .+...+ ...++.++.+|+.+.. .
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELD-QLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999999999998644222 111111 1235778888887652 2
Q ss_pred cCCCEEEEeccCCCC-CCc-c---cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASP-VHY-K---FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~-~~~-~---~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||.... ... . ++....+++|+.++..+++++ ++.+. ++|++||...+..
T Consensus 82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~------------ 149 (254)
T PRK07478 82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA------------ 149 (254)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc------------
Confidence 368999999997532 111 1 124568999999887776654 44444 8999999765421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.||++.+.+++.++.+. |+++++|+||.+-.+........ .... ...... . ...
T Consensus 150 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~-~~~~~~-~-------~~~ 215 (254)
T PRK07478 150 ---GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDT--PEAL-AFVAGL-H-------ALK 215 (254)
T ss_pred ---CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCC--HHHH-HHHHhc-C-------CCC
Confidence 11123689999999999999998764 79999999999877632100000 1111 111110 0 012
Q ss_pred ccccHHHHHHHHHHHHcCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~ 343 (447)
.+...+|+|+++++++.+.
T Consensus 216 ~~~~~~~va~~~~~l~s~~ 234 (254)
T PRK07478 216 RMAQPEEIAQAALFLASDA 234 (254)
T ss_pred CCcCHHHHHHHHHHHcCch
Confidence 3568899999999998754
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-17 Score=153.35 Aligned_cols=219 Identities=13% Similarity=0.062 Sum_probs=143.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc-----------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI-----------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~-----------~ 177 (447)
.+++|+++||||+|+||+++++.|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLK-KAREKIKSESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 367899999999999999999999999999999998643221 111111 1235778889987763 1
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|++|||||........ ++....+++|+.++..+++++ ++.+. ++|++||...+.
T Consensus 84 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~-------------- 149 (263)
T PRK08339 84 GEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE-------------- 149 (263)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC--------------
Confidence 3589999999975433222 234567899988876666554 44444 999999987532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccC-------CCchHHHHHHHHHhCCCeEEec
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCID-------DGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
+......|+.+|++.+.+++.++.+. |+++.+|.||.+..+..... ............... .+
T Consensus 150 --~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p--- 222 (263)
T PRK08339 150 --PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKP--IP--- 222 (263)
T ss_pred --CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhcc--CC---
Confidence 11123679999999999999998764 79999999999876521000 000001111111111 11
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCcc
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEF 356 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~ 356 (447)
..-+...+|+|.++++++.... .| .+.+.++...
T Consensus 223 ----~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdgG~~~ 260 (263)
T PRK08339 223 ----LGRLGEPEEIGYLVAFLASDLGSYINGAMIPVDGGRLN 260 (263)
T ss_pred ----cccCcCHHHHHHHHHHHhcchhcCccCceEEECCCccc
Confidence 1235778999999999987542 34 4555444333
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-16 Score=148.07 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=135.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++|+++||||+|+||++++++|+++|++|+++.++............ ....+..+.+|+.+.. +.+
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE 81 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999999999886543222211111111 1234667788886652 236
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||........ .+..+.+++|+.++.++++++ ++.+. +||++||.....
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------------- 145 (246)
T PRK12938 82 IDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK---------------- 145 (246)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC----------------
Confidence 89999999975432221 234568899999977766654 44555 899999975321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
+......|+.+|.+.+.+++.++++ .++++++++||.+.+|.... .....+.......+ ...+.
T Consensus 146 ~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~----~~~~~~~~~~~~~~---------~~~~~ 212 (246)
T PRK12938 146 GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA----IRPDVLEKIVATIP---------VRRLG 212 (246)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhh----cChHHHHHHHhcCC---------ccCCc
Confidence 1112367999999999999888764 48999999999998875311 11222222222211 12356
Q ss_pred cHHHHHHHHHHHHcCC
Q 013226 328 FVSDLVEGLIRLMEGD 343 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~ 343 (447)
..+|+++++.+++...
T Consensus 213 ~~~~v~~~~~~l~~~~ 228 (246)
T PRK12938 213 SPDEIGSIVAWLASEE 228 (246)
T ss_pred CHHHHHHHHHHHcCcc
Confidence 7899999999988764
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-16 Score=150.26 Aligned_cols=213 Identities=15% Similarity=0.065 Sum_probs=143.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||.+++++|+++|++|++++|+.... +.+...+ ...++..+.+|+.++. +
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDAL-EKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999864322 1121111 1235778888987653 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||......... ...+.+++|+.++..+++++.. .+ .++|++||......
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------ 152 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHII------------ 152 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCC------------
Confidence 46999999999754332222 2445789999999998887643 32 37999998753210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
........|+.+|++.+.+++.++.++ |+++.+|+||.+-.+.... . ...........+ ..
T Consensus 153 --~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~----~-~~~~~~~~~~~~---------~~ 216 (253)
T PRK05867 153 --NVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEP----Y-TEYQPLWEPKIP---------LG 216 (253)
T ss_pred --CCCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCccccc----c-hHHHHHHHhcCC---------CC
Confidence 000112579999999999999998764 8999999999997764211 1 111111222111 11
Q ss_pred ccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.+...+|+|+++++++.... .| .+.+.++
T Consensus 217 r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG 249 (253)
T PRK05867 217 RLGRPEELAGLYLYLASEASSYMTGSDIVIDGG 249 (253)
T ss_pred CCcCHHHHHHHHHHHcCcccCCcCCCeEEECCC
Confidence 35788999999999997643 34 4555443
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=149.36 Aligned_cols=215 Identities=12% Similarity=0.039 Sum_probs=146.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.+... .+.... ...++.++.+|+.+..
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLE-AAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 3468899999999999999999999999999999999643211 111111 1235788899987653
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+..+|+||||||......... +..+.+.+|+.++.++++++.+ .+. +||++||...+..
T Consensus 86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------ 153 (256)
T PRK06124 86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVA------------ 153 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccC------------
Confidence 235799999999754322222 2446789999999999876643 444 8999999764321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
......|+.+|.+.+.+++.++.+ .++++.+|+||.+.++....... ...+....... .+ ..
T Consensus 154 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~--~~~~~~~~~~~--~~-------~~ 218 (256)
T PRK06124 154 ----RAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAA--DPAVGPWLAQR--TP-------LG 218 (256)
T ss_pred ----CCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhcc--ChHHHHHHHhc--CC-------CC
Confidence 112378999999999999988765 38999999999999875211000 01111111111 11 12
Q ss_pred ccccHHHHHHHHHHHHcCCC---CCcEEecCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDH---VGPFNLGNP 353 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~---~g~~~i~~~ 353 (447)
.+++++|++++++.++.++. .|.+...++
T Consensus 219 ~~~~~~~~a~~~~~l~~~~~~~~~G~~i~~dg 250 (256)
T PRK06124 219 RWGRPEEIAGAAVFLASPAASYVNGHVLAVDG 250 (256)
T ss_pred CCCCHHHHHHHHHHHcCcccCCcCCCEEEECC
Confidence 37899999999999998753 354444433
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=150.09 Aligned_cols=194 Identities=15% Similarity=0.098 Sum_probs=138.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+.+++++||||+|+||.+++++|+++|++|++++|+.....+ ..... ...++.++.+|+.+.. +.
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKA-VAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 457889999999999999999999999999999986432211 11111 1236788889987653 23
Q ss_pred CCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+|||+||........ .+..+.+++|+.++.++++++.. .+. ++|++||...+..
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~-------------- 149 (239)
T PRK07666 84 SIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKG-------------- 149 (239)
T ss_pred CccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccC--------------
Confidence 699999999975432221 22456789999999999888753 344 8999999774321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.+|.+.+.+++.++.+ .++++++++||.+.++... .. .... +. ...+
T Consensus 150 --~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~--------~~---~~~~------~~---~~~~ 207 (239)
T PRK07666 150 --AAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAV--------DL---GLTD------GN---PDKV 207 (239)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchh--------hc---cccc------cC---CCCC
Confidence 112367999999999999888754 4899999999998876321 00 0000 01 1236
Q ss_pred ccHHHHHHHHHHHHcCC
Q 013226 327 QFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~ 343 (447)
+..+|+|++++.+++++
T Consensus 208 ~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 208 MQPEDLAEFIVAQLKLN 224 (239)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 78999999999999876
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=149.83 Aligned_cols=196 Identities=19% Similarity=0.110 Sum_probs=136.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-------------ccCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-------------LLEVD 181 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-------------~~~~d 181 (447)
+|+++||||+|+||++++++|+++|++|++++|+.+.. +++.......++.++.+|+.+.. ..++|
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGL-AALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 36799999999999999999999999999999864322 21212222346888899987642 23579
Q ss_pred EEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC-CeEEEEeCcc-ccCCCCCCCCCCCcCCCCCC
Q 013226 182 QIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSE-VYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g-~r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~ 251 (447)
+||||||......+.. +....+++|+.++.++++++.+ .+ .+||++||.. .++...
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-------------- 145 (260)
T PRK08267 80 VLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPG-------------- 145 (260)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCC--------------
Confidence 9999999765433332 2456899999999999888743 33 3899999976 444221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
...|+.+|+..+.+++.++.+ .++++++++||.+..+...... ......... .....+.
T Consensus 146 ---~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~----~~~~~~~~~-----------~~~~~~~ 207 (260)
T PRK08267 146 ---LAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTS----NEVDAGSTK-----------RLGVRLT 207 (260)
T ss_pred ---chhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCccccccc----chhhhhhHh-----------hccCCCC
Confidence 267999999999999998754 4899999999988764321000 000000000 0111356
Q ss_pred HHHHHHHHHHHHcCC
Q 013226 329 VSDLVEGLIRLMEGD 343 (447)
Q Consensus 329 v~D~a~ai~~~l~~~ 343 (447)
.+|+|++++.++++.
T Consensus 208 ~~~va~~~~~~~~~~ 222 (260)
T PRK08267 208 PEDVAEAVWAAVQHP 222 (260)
T ss_pred HHHHHHHHHHHHhCC
Confidence 799999999999764
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-16 Score=147.46 Aligned_cols=211 Identities=15% Similarity=0.090 Sum_probs=143.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEVD 181 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d 181 (447)
++++||||+|+||++++++|+++|++|++++|+............ ...++.++.+|+.+.. ...+|
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id 82 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVD 82 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 589999999999999999999999999999986431111111111 1235888999998753 23589
Q ss_pred EEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 182 QIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+|||+||........ +...+.+++|+.++.++++++ ++.+. +||++||...+.. .
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~----------------~ 146 (245)
T PRK12824 83 ILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKG----------------Q 146 (245)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccC----------------C
Confidence 999999975432222 224567899999998886554 44454 9999999875432 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
.....|+.+|++.+.+++.++.+ .++++++++||.+.++..... ............+ ...+..+
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~----~~~~~~~~~~~~~---------~~~~~~~ 213 (245)
T PRK12824 147 FGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQM----GPEVLQSIVNQIP---------MKRLGTP 213 (245)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhc----CHHHHHHHHhcCC---------CCCCCCH
Confidence 12367999999999999888754 489999999999988743211 1122222222211 1235678
Q ss_pred HHHHHHHHHHHcCCC---C-CcEEecCCCc
Q 013226 330 SDLVEGLIRLMEGDH---V-GPFNLGNPGE 355 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~---~-g~~~i~~~~~ 355 (447)
+|+++++..++.... . ..+++.++..
T Consensus 214 ~~va~~~~~l~~~~~~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 214 EEIAAAVAFLVSEAAGFITGETISINGGLY 243 (245)
T ss_pred HHHHHHHHHHcCccccCccCcEEEECCCee
Confidence 999999998886532 2 3777776643
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=149.02 Aligned_cols=204 Identities=19% Similarity=0.146 Sum_probs=137.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++++++||||+|+||.+++++|+++|++|++++|+..... .+...+ ....+.++.+|+.+.. +
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQ-AVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467889999999999999999999999999999998643221 111111 1234677888886652 2
Q ss_pred cCCCEEEEeccCCCC-CC-cc---cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASP-VH-YK---FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~-~~-~~---~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
..+|+|||+||.... .. .. ......+++|+.++..+++++ ++.+. ++|++||...+.
T Consensus 84 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------- 150 (252)
T PRK07035 84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS------------- 150 (252)
T ss_pred CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC-------------
Confidence 358999999985321 11 11 124468899999998888776 33444 899999975321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+..+...|+.||++.+.+++.++.++ |++++.++||.+..+........ ...........+ ..
T Consensus 151 ---~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~~~---------~~ 216 (252)
T PRK07035 151 ---PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKN--DAILKQALAHIP---------LR 216 (252)
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCC--HHHHHHHHccCC---------CC
Confidence 11233679999999999999998754 89999999999876532110000 111112221111 12
Q ss_pred ccccHHHHHHHHHHHHcCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~ 343 (447)
.+...+|+|+++++++.+.
T Consensus 217 ~~~~~~~va~~~~~l~~~~ 235 (252)
T PRK07035 217 RHAEPSEMAGAVLYLASDA 235 (252)
T ss_pred CcCCHHHHHHHHHHHhCcc
Confidence 3567899999999999765
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=149.38 Aligned_cols=194 Identities=18% Similarity=0.197 Sum_probs=138.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---cccccCCCceEEEeccccccc------------ccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+++++||||+|+||++++++|+++|++|++++|+.....+. +.......++.++.+|+.+.. +.+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999999864322111 111111346788999997763 246
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccc-cCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEV-YGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v-~g~~~~~~~~e~~~~~~ 249 (447)
+|+||||||+....... ......+++|+.++.++++++. +.+. +||++||... ++.+
T Consensus 82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 148 (248)
T PRK08251 82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLP------------- 148 (248)
T ss_pred CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCC-------------
Confidence 99999999976443322 1234578999999998888764 3444 8999999763 3321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
.+...|+.||++.+.+++.++.+. ++++++++||.+.++... +. +. ....
T Consensus 149 ---~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~----------------~~-----~~---~~~~ 201 (248)
T PRK08251 149 ---GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNA----------------KA-----KS---TPFM 201 (248)
T ss_pred ---CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhh----------------cc-----cc---CCcc
Confidence 113679999999999999887653 799999999998765310 00 00 1125
Q ss_pred ccHHHHHHHHHHHHcCCCCCcE
Q 013226 327 QFVSDLVEGLIRLMEGDHVGPF 348 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~~g~~ 348 (447)
+..+|.|++++.+++++....|
T Consensus 202 ~~~~~~a~~i~~~~~~~~~~~~ 223 (248)
T PRK08251 202 VDTETGVKALVKAIEKEPGRAA 223 (248)
T ss_pred CCHHHHHHHHHHHHhcCCCeEE
Confidence 7889999999999987655443
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-17 Score=157.93 Aligned_cols=176 Identities=16% Similarity=0.090 Sum_probs=126.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---cccccCCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIHHFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+++||||+|+||.+++++|+++|++|++++|+.....+. +.......++.++.+|+.+..
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999865432211 111112346788899987653
Q ss_pred ccCCCEEEEeccCCCCCC---cccChHHHHHHHHHHHHHHHHHHH----HCCCeEEEEeCccc-cCCCCCCCCCCCcCCC
Q 013226 177 LLEVDQIYHLACPASPVH---YKFNPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEV-YGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~---~~~~~~~~~~~Nv~gt~~ll~aa~----~~g~r~v~~SS~~v-~g~~~~~~~~e~~~~~ 248 (447)
...+|++|||||...... ..+..+..+.+|+.|+..+++.+. +...++|++||... ++.....+++++
T Consensus 91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~---- 166 (313)
T PRK05854 91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWE---- 166 (313)
T ss_pred CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCccccccc----
Confidence 235899999999764322 123466789999999887777654 33349999999874 332222222222
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh-----hCCcEEEEeeccccCCC
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG-----LGIEARIARIFNTYGPR 292 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~i~~~ivRp~~i~Gp~ 292 (447)
.+..+...|+.||++.+.++++++++ .++.+.++.||.+..+-
T Consensus 167 -~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~ 214 (313)
T PRK05854 167 -RSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNL 214 (313)
T ss_pred -ccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCc
Confidence 33445578999999999999999753 37999999999987653
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=156.69 Aligned_cols=201 Identities=12% Similarity=0.114 Sum_probs=141.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+.+++|+||||+|+||++++++|+++|++|++++|+.+... ++.... ...++.++.+|+.+.. .
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~-~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQ-AVAEECRALGAEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999999999998643322 111111 1235677888887652 2
Q ss_pred cCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|++|||||......+.+. ..+.+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 83 g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~------------- 149 (330)
T PRK06139 83 GRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAA------------- 149 (330)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCC-------------
Confidence 468999999997654443332 3457999999998887775 34443 8999999775421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh----hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
......|+.||+..+.+++.++.+ .+++++.++||.+.+|..... ... .+... ....
T Consensus 150 ---~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~-----~~~-----~~~~~------~~~~ 210 (330)
T PRK06139 150 ---QPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHG-----ANY-----TGRRL------TPPP 210 (330)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccc-----ccc-----ccccc------cCCC
Confidence 112368999999999988888765 279999999999988753110 000 01000 0112
Q ss_pred ccccHHHHHHHHHHHHcCCCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~~ 345 (447)
.+++.+|+|++++.+++++..
T Consensus 211 ~~~~pe~vA~~il~~~~~~~~ 231 (330)
T PRK06139 211 PVYDPRRVAKAVVRLADRPRA 231 (330)
T ss_pred CCCCHHHHHHHHHHHHhCCCC
Confidence 367899999999999987654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=154.09 Aligned_cols=196 Identities=15% Similarity=0.147 Sum_probs=138.8
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++++|+||||+|+||++++++|+++|++|++++|+.+.. +.+.... ...++.++.+|+.+..
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l-~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLL-DAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999964322 1111111 1235678889987753
Q ss_pred ccCCCEEEEeccCCCCCCccc------ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCc
Q 013226 177 LLEVDQIYHLACPASPVHYKF------NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~------~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+.++|+||||||........+ .....+++|+.|+.++++++. +.+. ++|++||.+++...
T Consensus 115 ~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 185 (293)
T PRK05866 115 IGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEA--------- 185 (293)
T ss_pred cCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC---------
Confidence 236899999999764433221 234578999999888877653 4554 99999997654321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
......|+.+|++.+.+++.++.+. ++++++++||.+-.+.... . .. + .+
T Consensus 186 ------~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~---------------~--~~-~-~~-- 238 (293)
T PRK05866 186 ------SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP---------------T--KA-Y-DG-- 238 (293)
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc---------------c--cc-c-cC--
Confidence 1123679999999999999987654 8999999999876653200 0 00 0 00
Q ss_pred eEccccHHHHHHHHHHHHcCCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~~ 344 (447)
...+..+++|+.++.+++++.
T Consensus 239 -~~~~~pe~vA~~~~~~~~~~~ 259 (293)
T PRK05866 239 -LPALTADEAAEWMVTAARTRP 259 (293)
T ss_pred -CCCCCHHHHHHHHHHHHhcCC
Confidence 124688999999999998754
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=148.97 Aligned_cols=196 Identities=12% Similarity=0.051 Sum_probs=139.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++|+++||||+|+||+.++++|+++|++|++++|+..... .+.... ...++.++.+|+++.. ..+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALE-ALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5678999999999999999999999999999998643221 111111 1246788899997753 135
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||........ .+....+++|+.++.++++++ ++.+. ++|++||...++.
T Consensus 84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--------------- 148 (241)
T PRK07454 84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNA--------------- 148 (241)
T ss_pred CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcC---------------
Confidence 89999999975432221 134567899999988887775 33443 8999999876542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
......|+.+|...+.+++.++.+ .+++++++|||.+-.|.... .. ....+. ...++
T Consensus 149 -~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~--~~-------------~~~~~~----~~~~~ 208 (241)
T PRK07454 149 -FPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDT--ET-------------VQADFD----RSAML 208 (241)
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccc--cc-------------cccccc----cccCC
Confidence 112367999999999999888654 48999999999987764210 00 000000 11357
Q ss_pred cHHHHHHHHHHHHcCCCC
Q 013226 328 FVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~~ 345 (447)
..+|+|++++.++.++..
T Consensus 209 ~~~~va~~~~~l~~~~~~ 226 (241)
T PRK07454 209 SPEQVAQTILHLAQLPPS 226 (241)
T ss_pred CHHHHHHHHHHHHcCCcc
Confidence 899999999999987754
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=150.49 Aligned_cols=200 Identities=14% Similarity=0.096 Sum_probs=139.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----------ccCCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----------LLEVD 181 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----------~~~~d 181 (447)
+++++++||||+|+||.+++++|+++|++|++++|+.....+.........++.++.+|+.+.. ...+|
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 82 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN 82 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999864322111111111236788899997763 24589
Q ss_pred EEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC-CeEEEEeCccc-cCCCCCCCCCCCcCCCCCC
Q 013226 182 QIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSEV-YGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g-~r~v~~SS~~v-~g~~~~~~~~e~~~~~~~~ 251 (447)
+||||||......... .....+++|+.|+.++++++.+ .+ .++|++||... ++.+
T Consensus 83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------------- 147 (263)
T PRK09072 83 VLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYP--------------- 147 (263)
T ss_pred EEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCC---------------
Confidence 9999999754322221 2456889999999999988754 23 37999988653 2211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
....|+.+|...+.+++.++.+ .+++++++.||.+.++.. .... ..... .....+..
T Consensus 148 --~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~--------~~~~-----~~~~~-----~~~~~~~~ 207 (263)
T PRK09072 148 --GYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMN--------SEAV-----QALNR-----ALGNAMDD 207 (263)
T ss_pred --CccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccch--------hhhc-----ccccc-----cccCCCCC
Confidence 1267999999999999888765 479999999988866431 0000 00000 00113578
Q ss_pred HHHHHHHHHHHHcCCCCCc
Q 013226 329 VSDLVEGLIRLMEGDHVGP 347 (447)
Q Consensus 329 v~D~a~ai~~~l~~~~~g~ 347 (447)
++|+|++++.+++++..+.
T Consensus 208 ~~~va~~i~~~~~~~~~~~ 226 (263)
T PRK09072 208 PEDVAAAVLQAIEKERAER 226 (263)
T ss_pred HHHHHHHHHHHHhCCCCEE
Confidence 8999999999999875543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-16 Score=146.73 Aligned_cols=204 Identities=13% Similarity=0.054 Sum_probs=141.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEeccccccc------------ccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------~~~ 179 (447)
+.+++|+||||+|+||++++++|+++|++|++++|+..... .....+. ..++.++.+|+.+.. +.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELE-EAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHH-HHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35689999999999999999999999999999998643221 1111111 146788888987652 136
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC---CC-eEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GA-RFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
+|+|||+||........ .+..+.+++|+.++.++++++.+. +. ++|++||...+. +
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~ 146 (237)
T PRK07326 83 LDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN----------------F 146 (237)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc----------------C
Confidence 99999999875432222 124467899999999998887542 33 899999976432 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
......|+.+|++.+.+++.++.+ .+++++++||+.+.++..... +. . .....+.
T Consensus 147 ~~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~----------------~~----~--~~~~~~~ 204 (237)
T PRK07326 147 FAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHT----------------PS----E--KDAWKIQ 204 (237)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccc----------------cc----h--hhhccCC
Confidence 122367999999999999887643 589999999998876532100 00 0 0011378
Q ss_pred HHHHHHHHHHHHcCCCC---CcEEecCCCc
Q 013226 329 VSDLVEGLIRLMEGDHV---GPFNLGNPGE 355 (447)
Q Consensus 329 v~D~a~ai~~~l~~~~~---g~~~i~~~~~ 355 (447)
.+|++++++.++..+.. +...+..+.+
T Consensus 205 ~~d~a~~~~~~l~~~~~~~~~~~~~~~~~~ 234 (237)
T PRK07326 205 PEDIAQLVLDLLKMPPRTLPSKIEVRPSRP 234 (237)
T ss_pred HHHHHHHHHHHHhCCccccccceEEecCCC
Confidence 89999999999987753 3555544333
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=146.50 Aligned_cols=200 Identities=13% Similarity=0.077 Sum_probs=145.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
.+.+|+.||||||++++|+.++.+++++|.++++.|.......+.........++..+.+|+.+.. ..
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 456889999999999999999999999999999999877666554433322236888999997652 34
Q ss_pred CCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHH----HHHCC-CeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGL----AKRVG-ARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~a----a~~~g-~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
.+|++|||||+.......+. -+.++++|+.+.....++ +.+.. .++|.++|+.-+-
T Consensus 114 ~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~--------------- 178 (300)
T KOG1201|consen 114 DVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLF--------------- 178 (300)
T ss_pred CceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhccc---------------
Confidence 69999999998766554433 334899999997766665 44433 4999999987331
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh------CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL------GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~------~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
+......|+.||+++..+.+++..|. |++++.++|+.+-. ++ +.. ..+. ...
T Consensus 179 -g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~T-gm-----------f~~---~~~~------~~l 236 (300)
T KOG1201|consen 179 -GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINT-GM-----------FDG---ATPF------PTL 236 (300)
T ss_pred -CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccc-cc-----------cCC---CCCC------ccc
Confidence 11223779999999999998886542 79999999977652 11 111 1111 134
Q ss_pred EccccHHHHHHHHHHHHcCCCCCc
Q 013226 324 RSFQFVSDLVEGLIRLMEGDHVGP 347 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~~g~ 347 (447)
...+..+.+|+-++.++..+..+.
T Consensus 237 ~P~L~p~~va~~Iv~ai~~n~~~~ 260 (300)
T KOG1201|consen 237 APLLEPEYVAKRIVEAILTNQAGL 260 (300)
T ss_pred cCCCCHHHHHHHHHHHHHcCCccc
Confidence 567899999999999999887653
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=157.79 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=122.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccccccCCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHHFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+|+||||+|+||.+++++|+++|++|++++|+.+...+ .+........+.++.+|+.+..
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 4688999999999999999999999999999999986443221 1111112346788899997753
Q ss_pred ccCCCEEEEeccCCCCCCc--ccChHHHHHHHHHH----HHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 177 LLEVDQIYHLACPASPVHY--KFNPVKTIKTNVVG----TLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~--~~~~~~~~~~Nv~g----t~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+.++|+||||||...+... .......+++|+.| +..++..+++.+. +||++||...+.... .+.++..+.
T Consensus 93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~-~~~~~~~~~-- 169 (306)
T PRK06197 93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAA-IHFDDLQWE-- 169 (306)
T ss_pred CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCC-CCccccCcc--
Confidence 2358999999997543221 22356678999999 5556666666554 999999987432111 111221111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEE--eeccccCCC
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIA--RIFNTYGPR 292 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~iv--Rp~~i~Gp~ 292 (447)
.+..+...|+.||++.+.+++.++.++ ++++.++ .||.|..+.
T Consensus 170 ~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 170 RRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 234455789999999999999988764 6666554 699887664
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-17 Score=152.14 Aligned_cols=207 Identities=16% Similarity=0.112 Sum_probs=132.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc-----c-cCCCEEEEe
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI-----L-LEVDQIYHL 186 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~-~~~d~Vih~ 186 (447)
+++|+||||+|+||++++++|+++|++|++++|+.... +.+.... ....+.++.+|+.+.. + .++|+||||
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQV-TALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 56899999999999999999999999999999864321 1111110 1235778888887653 2 279999999
Q ss_pred ccCCCCCCccc----ChHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCCh
Q 013226 187 ACPASPVHYKF----NPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSC 257 (447)
Q Consensus 187 Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~ 257 (447)
||......... .....+++|+.++.++.++ +++.+. +||++||...+.. ......
T Consensus 81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~----------------~~~~~~ 144 (257)
T PRK09291 81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLIT----------------GPFTGA 144 (257)
T ss_pred CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccC----------------CCCcch
Confidence 99754332222 2345788999998776654 344555 9999999753211 112367
Q ss_pred HHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhC-CC-eEEecCCCeeEccccHHHH
Q 013226 258 YDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRK-EP-LTVYGDGKQTRSFQFVSDL 332 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~v~D~ 332 (447)
|+.+|...|.+++.++.+ .|++++++|||.+..+.. ......+. ..... .. +.. .+.....+++..+|+
T Consensus 145 Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~----~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 218 (257)
T PRK09291 145 YCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFN----DTMAETPK-RWYDPARNFTDP-EDLAFPLEQFDPQEM 218 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccch----hhhhhhhh-hhcchhhHHHhh-hhhhccccCCCHHHH
Confidence 999999999999887654 599999999987643211 00001110 00000 00 110 111122355788888
Q ss_pred HHHHHHHHcCCC
Q 013226 333 VEGLIRLMEGDH 344 (447)
Q Consensus 333 a~ai~~~l~~~~ 344 (447)
++.++.++..+.
T Consensus 219 ~~~~~~~l~~~~ 230 (257)
T PRK09291 219 IDAMVEVIPADT 230 (257)
T ss_pred HHHHHHHhcCCC
Confidence 888888876543
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=151.14 Aligned_cols=198 Identities=17% Similarity=0.083 Sum_probs=134.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc-------------cCCCE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL-------------LEVDQ 182 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------------~~~d~ 182 (447)
++|+||||+|+||.++++.|+++|++|++++|+.+.. +... ..+++.+.+|+.+... ..+|.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~-~~~~----~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ 77 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDV-ARMN----SLGFTGILLDLDDPESVERAADEVIALTDNRLYG 77 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHh-HHHH----hCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeE
Confidence 5799999999999999999999999999999864322 1111 1246677777765421 34799
Q ss_pred EEEeccCCCCCCcc----cChHHHHHHHHHHHHHH----HHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 183 IYHLACPASPVHYK----FNPVKTIKTNVVGTLNM----LGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 183 Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~l----l~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
+||+||........ +.....+++|+.|+.++ ++.+++.+. ++|++||...+. +..
T Consensus 78 ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~~~ 141 (256)
T PRK08017 78 LFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLI----------------STP 141 (256)
T ss_pred EEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCccccc----------------CCC
Confidence 99999965432211 12446889999998776 555666665 899999975321 111
Q ss_pred CCChHHHHHHHHHHHHHHHHh---hhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCC-CeEEecCCCeeEccccH
Q 013226 254 VRSCYDEGKRTAETLTMDYHR---GLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKE-PLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~---~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v 329 (447)
....|+.+|+..|.+.+.++. ..++++++++||.+..+.. ....... ..+....+...+.++++
T Consensus 142 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (256)
T PRK08017 142 GRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFT------------DNVNQTQSDKPVENPGIAARFTLGP 209 (256)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchh------------hcccchhhccchhhhHHHhhcCCCH
Confidence 236799999999998887643 4589999999987754321 1111110 11111122223457999
Q ss_pred HHHHHHHHHHHcCCCCC
Q 013226 330 SDLVEGLIRLMEGDHVG 346 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~~g 346 (447)
+|+++++..+++++...
T Consensus 210 ~d~a~~~~~~~~~~~~~ 226 (256)
T PRK08017 210 EAVVPKLRHALESPKPK 226 (256)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 99999999999887654
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=147.65 Aligned_cols=205 Identities=16% Similarity=0.145 Sum_probs=140.4
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC--CCceEEEeccccccc------------ccCCCEE
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG--NPRFELIRHDVVEPI------------LLEVDQI 183 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~------------~~~~d~V 183 (447)
|+|||++|+||++++++|+++|++|++++|+.....+....... ..++.++.+|+.+.. ...+|+|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL 80 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 58999999999999999999999999998864222111111111 224778888987653 1358999
Q ss_pred EEeccCCCCCCc----ccChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCCCCC
Q 013226 184 YHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 184 ih~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
||+||....... .....+.+++|+.++.++++++.+ .+. +||++||.. ++|.+.
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~~~---------------- 144 (239)
T TIGR01830 81 VNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGNAG---------------- 144 (239)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCC----------------
Confidence 999997543211 123556889999999999998865 333 899999975 554321
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
...|+.+|.+.+.+++.++++ .++++++++|+.+.++... .....+........+. ..+.+++
T Consensus 145 -~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~----~~~~~~~~~~~~~~~~---------~~~~~~~ 210 (239)
T TIGR01830 145 -QANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTD----KLSEKVKKKILSQIPL---------GRFGTPE 210 (239)
T ss_pred -CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhh----hcChHHHHHHHhcCCc---------CCCcCHH
Confidence 267999999999999888765 4899999999988765321 1111222222222111 2266889
Q ss_pred HHHHHHHHHHcCCC---C-CcEEecC
Q 013226 331 DLVEGLIRLMEGDH---V-GPFNLGN 352 (447)
Q Consensus 331 D~a~ai~~~l~~~~---~-g~~~i~~ 352 (447)
|++++++.++.... . ..||+.+
T Consensus 211 ~~a~~~~~~~~~~~~~~~g~~~~~~~ 236 (239)
T TIGR01830 211 EVANAVAFLASDEASYITGQVIHVDG 236 (239)
T ss_pred HHHHHHHHHhCcccCCcCCCEEEeCC
Confidence 99999998885432 2 3777754
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=148.43 Aligned_cols=191 Identities=14% Similarity=0.086 Sum_probs=136.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc---------cCCCEEEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL---------LEVDQIYH 185 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---------~~~d~Vih 185 (447)
+++++||||+|+||++++++|+++|++|++++|+.... +++... ..++.++.+|+.+... ..+|.+||
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~-~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVL-DELHTQ--SANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHHHh--cCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 36799999999999999999999999999999864321 111111 2357788888876531 23699999
Q ss_pred eccCCCCCCc-cc---ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCcc-ccCCCCCCCCCCCcCCCCCCCCCCCh
Q 013226 186 LACPASPVHY-KF---NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSE-VYGDPLQHPQAETYWGNVNPIGVRSC 257 (447)
Q Consensus 186 ~Ag~~~~~~~-~~---~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~ 257 (447)
|||....... .. ...+.+++|+.++.++++++... +.++|++||.. .++. .....
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~-----------------~~~~~ 140 (240)
T PRK06101 78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELAL-----------------PRAEA 140 (240)
T ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCC-----------------CCCch
Confidence 9986432211 11 23468999999999999998763 44899999865 3221 12367
Q ss_pred HHHHHHHHHHHHHHHHh---hhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHR---GLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~---~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 334 (447)
|+.+|+..+.+++.++. ..|+++++++||.+++|..... ... . ...+..+|+|+
T Consensus 141 Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~----------------~~~---~----~~~~~~~~~a~ 197 (240)
T PRK06101 141 YGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKN----------------TFA---M----PMIITVEQASQ 197 (240)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCC----------------CCC---C----CcccCHHHHHH
Confidence 99999999999998874 3589999999999998743110 000 0 11468899999
Q ss_pred HHHHHHcCCCCCcE
Q 013226 335 GLIRLMEGDHVGPF 348 (447)
Q Consensus 335 ai~~~l~~~~~g~~ 348 (447)
.++..++.+...+|
T Consensus 198 ~i~~~i~~~~~~~~ 211 (240)
T PRK06101 198 EIRAQLARGKSHIY 211 (240)
T ss_pred HHHHHHhcCCCEEE
Confidence 99999988654333
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=148.75 Aligned_cols=206 Identities=15% Similarity=0.054 Sum_probs=139.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc------------ccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+.+++++||||+|+||++++++|+++|++|++++|... ..+...... ...++.++.+|+.+.. +..
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 82 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGR 82 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999998642 111111110 1235778889987652 235
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||......... ...+.+++|+.++.++++++.+ .+. +||++||..... .
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------------~ 147 (263)
T PRK08226 83 IDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDM---------------V 147 (263)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc---------------c
Confidence 899999999754333222 2345789999999999888653 333 899999965311 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccC----CCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCID----DGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
+......|+.+|...+.+++.++.++ +++++.++||.+.++-.... .......++..+..+.++
T Consensus 148 ~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------- 218 (263)
T PRK08226 148 ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPL--------- 218 (263)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCCC---------
Confidence 11123679999999999999998764 79999999999988632100 000011222222222111
Q ss_pred EccccHHHHHHHHHHHHcCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~ 343 (447)
..+...+|+|+++++++...
T Consensus 219 ~~~~~~~~va~~~~~l~~~~ 238 (263)
T PRK08226 219 RRLADPLEVGELAAFLASDE 238 (263)
T ss_pred CCCCCHHHHHHHHHHHcCch
Confidence 23568899999999988643
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=150.60 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=133.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc----CCCceEEEeccccccc------------ccCC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF----GNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++||||+|+||+++++.|+++|++|++++|+.....+.+.... ....+..+.+|+.+.. +.++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 38999999999999999999999999999986322222222111 1123445677876643 2468
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHH----HHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVV----GTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~----gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
|+||||||......... +....+++|+. ++++++.++++.+. +||++||...+...
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~--------------- 145 (251)
T PRK07069 81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAE--------------- 145 (251)
T ss_pred cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCC---------------
Confidence 99999999754332222 23457889988 66777777777665 99999998765321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhh-----CCcEEEEeeccccCCCCccCCCch-HHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGL-----GIEARIARIFNTYGPRMCIDDGRV-VSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~-----~i~~~ivRp~~i~Gp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
.....|+.+|...+.+++.++.+. +++++.++||.+.+|......... .........++. ....
T Consensus 146 -~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 215 (251)
T PRK07069 146 -PDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGV---------PLGR 215 (251)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccC---------CCCC
Confidence 122679999999999999887653 489999999999887531100000 001111111111 1123
Q ss_pred cccHHHHHHHHHHHHcCC
Q 013226 326 FQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~ 343 (447)
+.+++|++++++.++.++
T Consensus 216 ~~~~~~va~~~~~l~~~~ 233 (251)
T PRK07069 216 LGEPDDVAHAVLYLASDE 233 (251)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 568899999999987754
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=171.09 Aligned_cols=230 Identities=18% Similarity=0.225 Sum_probs=145.8
Q ss_pred CCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccccccCCCceEEEeccccccc-------
Q 013226 107 VPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHHFGNPRFELIRHDVVEPI------- 176 (447)
Q Consensus 107 ~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~------- 176 (447)
+|...++++|+++||||+|+||++++++|+++|++|++++|+...... .+........+..+.+|+++..
T Consensus 406 ~~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~ 485 (676)
T TIGR02632 406 MPKEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFA 485 (676)
T ss_pred CCCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHH
Confidence 344456788999999999999999999999999999999986432211 1111112235677889987753
Q ss_pred -----ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCC--CeEEEEeCcc-ccCCCCCCC
Q 013226 177 -----LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVG--ARFLLTSTSE-VYGDPLQHP 240 (447)
Q Consensus 177 -----~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g--~r~v~~SS~~-v~g~~~~~~ 240 (447)
+.++|+||||||......... .....+++|+.++..+++.+ ++.+ .+||++||.. +++.+
T Consensus 486 ~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~---- 561 (676)
T TIGR02632 486 DVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGK---- 561 (676)
T ss_pred HHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCC----
Confidence 236999999999754333222 23457889999887766544 3433 3899999976 33321
Q ss_pred CCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeecccc-CCCCccCCCchHHHHHHHHHhCCC-eE
Q 013226 241 QAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTY-GPRMCIDDGRVVSNFVAQALRKEP-LT 315 (447)
Q Consensus 241 ~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~-Gp~~~~~~~~~~~~~~~~~~~~~~-~~ 315 (447)
....|+.+|++.+.+++.++.+ .|++++.|+|+.|+ |.+.. .................. ..
T Consensus 562 -------------~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~-~~~~~~~~~~~~~~~~~~~~~ 627 (676)
T TIGR02632 562 -------------NASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIW-DGEWREERAAAYGIPADELEE 627 (676)
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccc-cccchhhhhhcccCChHHHHH
Confidence 2378999999999999998875 47999999999887 33221 100000000000000000 00
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
.+........+++.+|+|+++++++.+.. .| .+++.++.
T Consensus 628 ~~~~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG~ 670 (676)
T TIGR02632 628 HYAKRTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGGV 670 (676)
T ss_pred HHHhcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCc
Confidence 01111122346899999999999987532 34 56665543
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-16 Score=147.14 Aligned_cols=205 Identities=13% Similarity=0.057 Sum_probs=138.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||+++++.|+++|++|+++.|+...........+ ...++.++.+|+.+.. .
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 83 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF 83 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999988875332222111111 1235678888987753 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHH----HHHHCC--CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLG----LAKRVG--ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~----aa~~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
..+|+||||||......... .....+++|+.++..+++ .+++.+ .++|++||...+
T Consensus 84 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~-------------- 149 (261)
T PRK08936 84 GTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ-------------- 149 (261)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc--------------
Confidence 35899999999755433322 244578999888766554 445544 389999996532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
.+......|+.+|++.+.+.+.++.++ ++++++|+||.+.+|........ ...........+ ..
T Consensus 150 --~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~~~~---------~~ 216 (261)
T PRK08936 150 --IPWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFAD--PKQRADVESMIP---------MG 216 (261)
T ss_pred --CCCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCC--HHHHHHHHhcCC---------CC
Confidence 222334789999999999998887654 89999999999988753211001 111111211111 11
Q ss_pred ccccHHHHHHHHHHHHcCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~ 343 (447)
.+...+|+++.+.+++...
T Consensus 217 ~~~~~~~va~~~~~l~s~~ 235 (261)
T PRK08936 217 YIGKPEEIAAVAAWLASSE 235 (261)
T ss_pred CCcCHHHHHHHHHHHcCcc
Confidence 3667899999999998754
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-16 Score=146.79 Aligned_cols=209 Identities=12% Similarity=0.120 Sum_probs=140.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++++++||||+|+||+++++.|+++|+.|++.+|+.+... .+.... ..++.++.+|+.+.. +.++
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLE-ALAAEL-GERVKIFPANLSDRDEVKALGQKAEADLEGV 81 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999999999999999999999888877533221 111111 235778888887652 2458
Q ss_pred CEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCC
Q 013226 181 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~ 250 (447)
|+||||||........ .+..+.+++|+.++.++++++.+ .+. +||++||.. .++.+.
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------------- 148 (245)
T PRK12936 82 DILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNPG------------- 148 (245)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCCC-------------
Confidence 9999999975432221 23556889999999998887643 233 899999975 443221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
...|+.+|...+.+++.++.+ .++++++++||.+..+.... .... ....... .. ....+.
T Consensus 149 ----~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~----~~~~-~~~~~~~-~~-------~~~~~~ 211 (245)
T PRK12936 149 ----QANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGK----LNDK-QKEAIMG-AI-------PMKRMG 211 (245)
T ss_pred ----CcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcc----cChH-HHHHHhc-CC-------CCCCCc
Confidence 257999999999988887654 48999999999876543210 0011 1111111 11 112356
Q ss_pred cHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 328 FVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+.+|+++++.+++.... .| .+++.++
T Consensus 212 ~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 212 TGAEVASAVAYLASSEAAYVTGQTIHVNGG 241 (245)
T ss_pred CHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 78999999998886542 24 6777654
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-16 Score=149.01 Aligned_cols=205 Identities=14% Similarity=0.090 Sum_probs=135.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+++||||+++||+++++.|+++|++|+++.|+.....+...... ...++.++.+|+++..
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999888764332222111111 1236788999998752
Q ss_pred ccCCCEEEEeccCCCC------CCc-c---cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCC
Q 013226 177 LLEVDQIYHLACPASP------VHY-K---FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQ 241 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~------~~~-~---~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~ 241 (447)
+.++|++|||||.... ..+ + ......+++|+.+...+.+.+ ++.+. +||++||...+.
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 157 (260)
T PRK08416 85 FDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLV------- 157 (260)
T ss_pred cCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccccc-------
Confidence 2458999999986421 111 1 123457888888876665554 33343 899999975321
Q ss_pred CCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEec
Q 013226 242 AETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 242 ~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
+......|+.+|++.+.+++.++.++ |+++.+|+||.+-.+....... . ...........+
T Consensus 158 ---------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~-~-~~~~~~~~~~~~----- 221 (260)
T PRK08416 158 ---------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTN-Y-EEVKAKTEELSP----- 221 (260)
T ss_pred ---------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccC-C-HHHHHHHHhcCC-----
Confidence 11123679999999999999998765 8999999999886542110000 0 111111111111
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
..-+..++|+|+++++++.+.
T Consensus 222 ----~~r~~~p~~va~~~~~l~~~~ 242 (260)
T PRK08416 222 ----LNRMGQPEDLAGACLFLCSEK 242 (260)
T ss_pred ----CCCCCCHHHHHHHHHHHcChh
Confidence 112678899999999998764
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=146.96 Aligned_cols=203 Identities=12% Similarity=0.062 Sum_probs=139.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc-cccccccCCCceEEEeccccccc------------cc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK-DNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
.+++|+++||||+|+||.+++++|+++|++|+++++...... +.+. . ...++..+..|+.+.. +.
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~-~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVT-A-LGRRFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHH-h-cCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999998876432110 1111 1 1235778888987642 23
Q ss_pred CCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
++|++|||||........ .+..+.+++|+.++.++++++.. .+ .++|++||...+....
T Consensus 85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------- 153 (253)
T PRK08993 85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGI----------- 153 (253)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCCC-----------
Confidence 599999999975433221 23556899999999988887643 23 3899999987653211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
....|+.+|++.+.+++.++.+ .|+++..++||.+..+........ .......... ++ . .-
T Consensus 154 -----~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~--~~~~~~~~~~--~p---~----~r 217 (253)
T PRK08993 154 -----RVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRAD--EQRSAEILDR--IP---A----GR 217 (253)
T ss_pred -----CCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccc--hHHHHHHHhc--CC---C----CC
Confidence 1257999999999999998876 489999999999987642100000 0111111111 11 1 12
Q ss_pred cccHHHHHHHHHHHHcCC
Q 013226 326 FQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~ 343 (447)
+...+|+|+++++++.+.
T Consensus 218 ~~~p~eva~~~~~l~s~~ 235 (253)
T PRK08993 218 WGLPSDLMGPVVFLASSA 235 (253)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 667899999999999864
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-16 Score=147.06 Aligned_cols=205 Identities=13% Similarity=0.043 Sum_probs=140.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||.+++++|+++|++|++++|+.....+ ..... ...++.++.+|+.+.. +
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDK-GLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3577899999999999999999999999999999886432211 11111 1235788899997663 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCcc-ccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSE-VYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~ 247 (447)
..+|+||||||......... .....+++|+.++..+++++.. .+. +||++||.. .++.
T Consensus 86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 153 (265)
T PRK07097 86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGR------------ 153 (265)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCC------------
Confidence 35899999999765432222 3456789999998887777543 344 999999965 3322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCC----chHHHHHHHHHhCCCeEEecCC
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDG----RVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
.....|+.+|++.+.+++.++.+. |++++.|+||.+.++....... .-...+........+
T Consensus 154 -----~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 221 (265)
T PRK07097 154 -----ETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTP------- 221 (265)
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCC-------
Confidence 123679999999999999998764 8999999999998874311000 000011111111111
Q ss_pred CeeEccccHHHHHHHHHHHHcCC
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
...+...+|+|..++.++.+.
T Consensus 222 --~~~~~~~~dva~~~~~l~~~~ 242 (265)
T PRK07097 222 --AARWGDPEDLAGPAVFLASDA 242 (265)
T ss_pred --ccCCcCHHHHHHHHHHHhCcc
Confidence 123567899999999999763
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=149.98 Aligned_cols=205 Identities=15% Similarity=0.145 Sum_probs=138.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
+++++++++||||+|+||.+++++|+++|++|++++|+.+...+ ..... ...++.++.+|+++..
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDA-AVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999986432211 11111 1234577888887653
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+.++|+||||||......... +..+.+++|+.|+.++++++.. .+.+||++||...+.
T Consensus 84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~-------------- 149 (264)
T PRK07576 84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV-------------- 149 (264)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc--------------
Confidence 235899999998543222221 2456788999999999988754 334999999976431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHH-HHHHHHHhCCCeEEecCCCeeE
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVS-NFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.+|+..+.+++.++.+ .++++++++||.+.+.... ..+.. ......... ..+ ..
T Consensus 150 --~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~---~~~~~~~~~~~~~~~-~~~-------~~ 216 (264)
T PRK07576 150 --PMPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGM---ARLAPSPELQAAVAQ-SVP-------LK 216 (264)
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHH---hhcccCHHHHHHHHh-cCC-------CC
Confidence 1112367999999999999998765 4799999999988753210 00000 001111111 111 12
Q ss_pred ccccHHHHHHHHHHHHcCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~ 343 (447)
.+...+|+|+++++++..+
T Consensus 217 ~~~~~~dva~~~~~l~~~~ 235 (264)
T PRK07576 217 RNGTKQDIANAALFLASDM 235 (264)
T ss_pred CCCCHHHHHHHHHHHcChh
Confidence 3567899999999999753
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.1e-17 Score=150.82 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=118.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc---cccccccCCCceEEEeccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK---DNLIHHFGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~---~~~~~~~~~~~v~~~~~D~~~~~----------- 176 (447)
....+|+|+|||||++||.+++.+|+++|..++.+.|+....+ +++.+.+...++..+.+|+.+..
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999888877543221 22222222336899999997762
Q ss_pred -ccCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHH----HHCC-CeEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 -LLEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLA----KRVG-ARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa----~~~g-~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|++|||||+......+.. ....+++|+.|+..+.+++ ++.+ .+||.+||+.-+
T Consensus 88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~------------- 154 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGK------------- 154 (282)
T ss_pred hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccc-------------
Confidence 4579999999998763222222 3458999999988888876 4445 499999998743
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhhCCc---EE-EEeecccc
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIE---AR-IARIFNTY 289 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~---~~-ivRp~~i~ 289 (447)
.+....+.|++||++.+.+.+.++.|..-. +. +|.||.|-
T Consensus 155 ---~~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~ 198 (282)
T KOG1205|consen 155 ---MPLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIE 198 (282)
T ss_pred ---cCCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCcee
Confidence 122223589999999999999999876322 21 47776664
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-16 Score=143.47 Aligned_cols=203 Identities=16% Similarity=0.107 Sum_probs=136.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCCCE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEVDQ 182 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~ 182 (447)
+|+++||||+|+||++++++|+++|++|++++|+.....+.+. ...+.++.+|+.+.. +.++|+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 77 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLR----QAGAQCIQADFSTNAGIMAFIDELKQHTDGLRA 77 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHH----HcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccE
Confidence 5789999999999999999999999999999986543222221 123567888887652 235899
Q ss_pred EEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CC---CeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 183 IYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VG---ARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 183 Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g---~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
+|||||........ .+....+++|+.++..+.+++.+ .+ .++|++||..... +
T Consensus 78 lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~----------------~ 141 (236)
T PRK06483 78 IIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK----------------G 141 (236)
T ss_pred EEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc----------------C
Confidence 99999974332221 23456889999998877766543 33 3899999865321 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
......|+.+|++.+.+++.++.++ ++++.+|+||.+..+.. . . ...........++. -+...
T Consensus 142 ~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~--~-~---~~~~~~~~~~~~~~---------~~~~~ 206 (236)
T PRK06483 142 SDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEG--D-D---AAYRQKALAKSLLK---------IEPGE 206 (236)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCC--C-C---HHHHHHHhccCccc---------cCCCH
Confidence 1123679999999999999998875 59999999998743221 1 1 11111222222211 13467
Q ss_pred HHHHHHHHHHHcCCC-CC-cEEecC
Q 013226 330 SDLVEGLIRLMEGDH-VG-PFNLGN 352 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~-~g-~~~i~~ 352 (447)
+|+++++.+++.... .| ++.+.+
T Consensus 207 ~~va~~~~~l~~~~~~~G~~i~vdg 231 (236)
T PRK06483 207 EEIIDLVDYLLTSCYVTGRSLPVDG 231 (236)
T ss_pred HHHHHHHHHHhcCCCcCCcEEEeCc
Confidence 999999999997432 24 444443
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.9e-16 Score=145.81 Aligned_cols=210 Identities=17% Similarity=0.128 Sum_probs=141.8
Q ss_pred cCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCCCCC--------ccc--ccccc--CCCceEEEeccccccc-
Q 013226 112 QRKSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYFTGK--------KDN--LIHHF--GNPRFELIRHDVVEPI- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~~~~--------~~~--~~~~~--~~~~v~~~~~D~~~~~- 176 (447)
.+++++|+||||+| +||.+++++|+++|++|++++|+..+. .+. +.... ...++.++.+|+.+..
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 81 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYA 81 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 35778999999995 799999999999999999999862211 000 11111 1235788999987753
Q ss_pred -----------ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----C-CeEEEEeCccccCCC
Q 013226 177 -----------LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----G-ARFLLTSTSEVYGDP 236 (447)
Q Consensus 177 -----------~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g-~r~v~~SS~~v~g~~ 236 (447)
+..+|+||||||......... +.+..+++|+.++.++++++... + .+||++||...++.
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~- 160 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGP- 160 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCC-
Confidence 245899999999754332221 24567899999999999887542 2 38999999865432
Q ss_pred CCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCC
Q 013226 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP 313 (447)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~ 313 (447)
......|+.+|++.+.+++.++.+ .+++++.++||.+..+... ...........+
T Consensus 161 ---------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~-------~~~~~~~~~~~~ 218 (256)
T PRK12748 161 ---------------MPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWIT-------EELKHHLVPKFP 218 (256)
T ss_pred ---------------CCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCC-------hhHHHhhhccCC
Confidence 112367999999999999998765 4899999999987765321 111111111100
Q ss_pred eEEecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 314 LTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 314 ~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
. ..+...+|+++++.+++.... .| .+++.++
T Consensus 219 -----~----~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 253 (256)
T PRK12748 219 -----Q----GRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGG 253 (256)
T ss_pred -----C----CCCcCHHHHHHHHHHHhCcccccccCCEEEecCC
Confidence 0 124457999999998887542 24 5556443
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-16 Score=148.43 Aligned_cols=198 Identities=15% Similarity=0.086 Sum_probs=132.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc----------------
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI---------------- 176 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~---------------- 176 (447)
.+++||||+|+||++++++|+++|++|++++|+.....+.+...+ ...++.++.+|+++..
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~ 81 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA 81 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence 469999999999999999999999999998765332222222111 1224567888988753
Q ss_pred ccCCCEEEEeccCCCCCCccc---------------ChHHHHHHHHHHHHHHHHHHHHCC-----------CeEEEEeCc
Q 013226 177 LLEVDQIYHLACPASPVHYKF---------------NPVKTIKTNVVGTLNMLGLAKRVG-----------ARFLLTSTS 230 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~---------------~~~~~~~~Nv~gt~~ll~aa~~~g-----------~r~v~~SS~ 230 (447)
+.++|+||||||...+..... ...+++++|+.++..+++++.... .++|++||.
T Consensus 82 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~ 161 (267)
T TIGR02685 82 FGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDA 161 (267)
T ss_pred cCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhh
Confidence 135999999999754322211 134679999999999988754321 257777776
Q ss_pred cccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHH
Q 013226 231 EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQ 307 (447)
Q Consensus 231 ~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~ 307 (447)
... .+......|+.+|++.+.+++.++.+ .|+++++|+||.+..|.... ......
T Consensus 162 ~~~----------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~------~~~~~~ 219 (267)
T TIGR02685 162 MTD----------------QPLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP------FEVQED 219 (267)
T ss_pred hcc----------------CCCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc------hhHHHH
Confidence 432 12223478999999999999999776 58999999999987663210 111111
Q ss_pred HHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 308 ALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.....++ . ..+...+|+++++++++.+.
T Consensus 220 ~~~~~~~----~----~~~~~~~~va~~~~~l~~~~ 247 (267)
T TIGR02685 220 YRRKVPL----G----QREASAEQIADVVIFLVSPK 247 (267)
T ss_pred HHHhCCC----C----cCCCCHHHHHHHHHHHhCcc
Confidence 1111111 0 12468899999999999764
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-16 Score=146.26 Aligned_cols=210 Identities=13% Similarity=0.084 Sum_probs=142.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-ecCCCCCcccccccc--CCCceEEEecccccccc-----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVV-DNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL----------- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~----------- 177 (447)
.+++++|+||||+|+||.+++++|+++|++|+++ +|+.... ....... ...++.++.+|+.+...
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAA-QELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999998 7753321 1111111 12357888999876531
Q ss_pred -cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCcccc-CCCCCCCCCCCcC
Q 013226 178 -LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVY-GDPLQHPQAETYW 246 (447)
Q Consensus 178 -~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~-g~~~~~~~~e~~~ 246 (447)
.++|+|||+||......... ...+.+++|+.++.++++++.. .+. +||++||...+ +.+
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~---------- 150 (247)
T PRK05565 81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGAS---------- 150 (247)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCC----------
Confidence 26999999999763222221 2456889999998888887654 333 79999997643 321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
....|+.+|.+.+.+++.++.+ .|+++++++||.+..+.... ............. ..
T Consensus 151 -------~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~----~~~~~~~~~~~~~---------~~ 210 (247)
T PRK05565 151 -------CEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSS----FSEEDKEGLAEEI---------PL 210 (247)
T ss_pred -------CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccc----cChHHHHHHHhcC---------CC
Confidence 1257999999999998888764 38999999999987654211 1111111111110 11
Q ss_pred EccccHHHHHHHHHHHHcCCCC---C-cEEecC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDHV---G-PFNLGN 352 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~~---g-~~~i~~ 352 (447)
..+...+|++++++.++.+... | .+++.+
T Consensus 211 ~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~ 243 (247)
T PRK05565 211 GRLGKPEEIAKVVLFLASDDASYITGQIITVDG 243 (247)
T ss_pred CCCCCHHHHHHHHHHHcCCccCCccCcEEEecC
Confidence 2357889999999999976532 3 455544
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-16 Score=146.21 Aligned_cols=202 Identities=19% Similarity=0.175 Sum_probs=133.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+|+|+||||+|+||..+++.|+++|++|+++.++.....+...... ...++.++.+|+.+.. +..+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRL 81 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999887654322222111111 1235788889887652 2358
Q ss_pred CEEEEeccCCCCCC-c-cc---ChHHHHHHHHHHHHHHHHHHHHC--------CCeEEEEeCcc-ccCCCCCCCCCCCcC
Q 013226 181 DQIYHLACPASPVH-Y-KF---NPVKTIKTNVVGTLNMLGLAKRV--------GARFLLTSTSE-VYGDPLQHPQAETYW 246 (447)
Q Consensus 181 d~Vih~Ag~~~~~~-~-~~---~~~~~~~~Nv~gt~~ll~aa~~~--------g~r~v~~SS~~-v~g~~~~~~~~e~~~ 246 (447)
|+||||||...... . +. +....+.+|+.++..+++++.+. +.+||++||.. .++.+.
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~--------- 152 (248)
T PRK06947 82 DALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPN--------- 152 (248)
T ss_pred CEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCCC---------
Confidence 99999999753321 1 11 23457899999998887654321 12699999976 333211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
....|+.+|+..+.+++.++.+. ++++++++||.+..|..... .. ...........++
T Consensus 153 -------~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~-~~--~~~~~~~~~~~~~--------- 213 (248)
T PRK06947 153 -------EYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASG-GQ--PGRAARLGAQTPL--------- 213 (248)
T ss_pred -------CCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCccccccccc-CC--HHHHHHHhhcCCC---------
Confidence 12469999999999999988764 89999999999988753211 01 1111111111111
Q ss_pred EccccHHHHHHHHHHHHcCCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~ 344 (447)
.-+..++|+++.+++++.++.
T Consensus 214 ~~~~~~e~va~~~~~l~~~~~ 234 (248)
T PRK06947 214 GRAGEADEVAETIVWLLSDAA 234 (248)
T ss_pred CCCcCHHHHHHHHHHHcCccc
Confidence 114678999999999988753
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=146.90 Aligned_cols=191 Identities=12% Similarity=0.074 Sum_probs=135.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc--ccCCCceEEEecccccccc---------cCCCEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH--HFGNPRFELIRHDVVEPIL---------LEVDQI 183 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~~---------~~~d~V 183 (447)
+|+|+||||+|+||.+++++|+++|++|++++|+.+...+.... .....++.++.+|+.+..- ..+|+|
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 46899999999999999999999999999999975432211111 1123468889999987531 247999
Q ss_pred EEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 184 YHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 184 ih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
||+||......... +..+.+++|+.++.++++++.. .+. ++|++||...... ...
T Consensus 81 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~~~ 144 (243)
T PRK07102 81 LIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRG----------------RAS 144 (243)
T ss_pred EECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCC----------------CCC
Confidence 99999654322221 2345789999999999888654 344 8999999752211 111
Q ss_pred CChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHH
Q 013226 255 RSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 331 (447)
...|+.+|+..+.+++.++.+ .|+++.+++|+.++++... +...+ ....+.++|
T Consensus 145 ~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~----------------~~~~~-------~~~~~~~~~ 201 (243)
T PRK07102 145 NYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTA----------------GLKLP-------GPLTAQPEE 201 (243)
T ss_pred CcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhh----------------ccCCC-------ccccCCHHH
Confidence 257999999999999998654 4899999999999876310 00000 112577899
Q ss_pred HHHHHHHHHcCCC
Q 013226 332 LVEGLIRLMEGDH 344 (447)
Q Consensus 332 ~a~ai~~~l~~~~ 344 (447)
+++.++.+++++.
T Consensus 202 ~a~~i~~~~~~~~ 214 (243)
T PRK07102 202 VAKDIFRAIEKGK 214 (243)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999654
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-16 Score=146.10 Aligned_cols=203 Identities=14% Similarity=0.042 Sum_probs=139.2
Q ss_pred cCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+ ++||+.++++|+++|++|++.+|+. ...+.+ .......+.++.+|+++.. +
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~-~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSL-QKLVDEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHH-HhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 3578999999999 7999999999999999999998852 111111 1122235778899997652 2
Q ss_pred cCCCEEEEeccCCCC----CCcc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcC
Q 013226 178 LEVDQIYHLACPASP----VHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~----~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
.++|++|||||...+ .... ++....+++|+.++..+++++... +.++|++||.....
T Consensus 82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------------ 149 (252)
T PRK06079 82 GKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER------------ 149 (252)
T ss_pred CCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc------------
Confidence 459999999997542 1111 124567899999999888887653 23899999865321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
+......|+.+|++.+.+++.++.+ .|+++.+|.||.|-.+....... ............+.
T Consensus 150 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~--------- 214 (252)
T PRK06079 150 ----AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKG--HKDLLKESDSRTVD--------- 214 (252)
T ss_pred ----cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCC--hHHHHHHHHhcCcc---------
Confidence 1112367999999999999999876 48999999999997763211000 01222222221111
Q ss_pred EccccHHHHHHHHHHHHcCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~ 343 (447)
.-+...+|+|+++++++...
T Consensus 215 ~r~~~pedva~~~~~l~s~~ 234 (252)
T PRK06079 215 GVGVTIEEVGNTAAFLLSDL 234 (252)
T ss_pred cCCCCHHHHHHHHHHHhCcc
Confidence 12677899999999999764
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=150.30 Aligned_cols=213 Identities=21% Similarity=0.145 Sum_probs=140.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEVD 181 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d 181 (447)
|+++||||+|+||.+++++|+++|++|++++|+..... .....+ ...++.++.+|+.++. +..+|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAK-ETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 57999999999999999999999999999998633211 111111 1235788889987753 13589
Q ss_pred EEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCcc-ccCCCCCCCCCCCcCCCCC
Q 013226 182 QIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSE-VYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~-v~g~~~~~~~~e~~~~~~~ 250 (447)
+||||||......... .....+++|+.++..+++++.+ .+ .++|++||.. .++.+
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------------- 145 (254)
T TIGR02415 80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNP-------------- 145 (254)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCC--------------
Confidence 9999999754322211 2446799999999877766543 33 3899999976 33321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEE------ecCCC
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTV------YGDGK 321 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 321 (447)
..+.|+.+|++.+.+++.++.+. ++++.+++||.+..+... .+..........+. +....
T Consensus 146 ---~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (254)
T TIGR02415 146 ---ILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWE--------EIDEETSEIAGKPIGEGFEEFSSEI 214 (254)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhh--------hhhhhhhhcccCchHHHHHHHHhhC
Confidence 13779999999999999887664 899999999988765311 11000000000000 00000
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---CCcEEecCCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---VGPFNLGNPG 354 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~g~~~i~~~~ 354 (447)
....+..++|+++++.+++++.. .|.+...+++
T Consensus 215 ~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 250 (254)
T TIGR02415 215 ALGRPSEPEDVAGLVSFLASEDSDYITGQSILVDGG 250 (254)
T ss_pred CCCCCCCHHHHHHHHHhhcccccCCccCcEEEecCC
Confidence 11236888999999999998754 3655555543
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=146.12 Aligned_cols=193 Identities=16% Similarity=0.130 Sum_probs=133.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc---cCCCceEEEecccccc-------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH---FGNPRFELIRHDVVEP------------- 175 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~D~~~~------------- 175 (447)
.+++++++||||+|+||++++++|+++|++|++++|+..... ..... .....+.++..|+.+.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLE-KVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHH-HHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 357789999999999999999999999999999999754221 11111 1122445566666431
Q ss_pred -cc-cCCCEEEEeccCCCCC-Ccc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCC
Q 013226 176 -IL-LEVDQIYHLACPASPV-HYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 176 -~~-~~~d~Vih~Ag~~~~~-~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e 243 (447)
.+ ..+|+||||||..... .+. .+..+.+++|+.|+.++++++.+ .+. ++|++||....
T Consensus 82 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~---------- 151 (239)
T PRK08703 82 EATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGE---------- 151 (239)
T ss_pred HHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccc----------
Confidence 11 4589999999964321 111 12445789999998888887643 343 99999986432
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh----CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL----GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
.+......|+.+|++.+.+++.++.+. ++++.+++||.|++|.... ...+.
T Consensus 152 ------~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~------------~~~~~------- 206 (239)
T PRK08703 152 ------TPKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIK------------SHPGE------- 206 (239)
T ss_pred ------cCCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccc------------cCCCC-------
Confidence 122233679999999999999988764 5999999999999875210 00010
Q ss_pred CCeeEccccHHHHHHHHHHHHcC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
....+...+|++.++++++..
T Consensus 207 --~~~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 207 --AKSERKSYGDVLPAFVWWASA 227 (239)
T ss_pred --CccccCCHHHHHHHHHHHhCc
Confidence 112356889999999999974
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-16 Score=150.42 Aligned_cols=199 Identities=16% Similarity=0.074 Sum_probs=134.8
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc-----------c
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI-----------L 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----------~ 177 (447)
..+++|+++||||+|+||++++++|+++|++|++.++......+.....+ ...++.++.+|+.+.. +
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999999875332222222111 1236778899987641 2
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC--------C----CeEEEEeCccccCCCCCCCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV--------G----ARFLLTSTSEVYGDPLQHPQ 241 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~--------g----~r~v~~SS~~v~g~~~~~~~ 241 (447)
.++|+||||||........ .+....+++|+.|+.++++++... + .++|++||...+..
T Consensus 88 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------ 161 (306)
T PRK07792 88 GGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVG------ 161 (306)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccC------
Confidence 4689999999976543222 234568899999999999876421 1 38999999764321
Q ss_pred CCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEec
Q 013226 242 AETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 242 ~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
......|+.+|++.+.+++.++.+ +|+++.+|.|+. ...+ .... ....+.. .
T Consensus 162 ----------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~--~t~~-------~~~~----~~~~~~~-~- 216 (306)
T PRK07792 162 ----------PVGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA--RTAM-------TADV----FGDAPDV-E- 216 (306)
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC--CCch-------hhhh----ccccchh-h-
Confidence 112267999999999999998765 589999999962 1111 0000 0000000 0
Q ss_pred CCCeeEccccHHHHHHHHHHHHcC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
.....++.++|++.++.+++..
T Consensus 217 --~~~~~~~~pe~va~~v~~L~s~ 238 (306)
T PRK07792 217 --AGGIDPLSPEHVVPLVQFLASP 238 (306)
T ss_pred --hhccCCCCHHHHHHHHHHHcCc
Confidence 0112356899999999998865
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=146.08 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=136.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---c---cccc--CCCceEEEeccccccc-------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---L---IHHF--GNPRFELIRHDVVEPI------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~---~~~~--~~~~v~~~~~D~~~~~------- 176 (447)
.+++++++||||+|+||.+++++|+++|++|++++|+.+..... + .... ...++.++.+|+++..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999875432110 1 0000 1235778889987663
Q ss_pred -----ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC-CeEEEEeCccccCCCCCCCCC
Q 013226 177 -----LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSEVYGDPLQHPQA 242 (447)
Q Consensus 177 -----~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g-~r~v~~SS~~v~g~~~~~~~~ 242 (447)
+.++|+||||||......... +....+++|+.++.++++++.. .+ .++|++||......
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------- 155 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP------- 155 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc-------
Confidence 136899999999754433222 2455788999999999998854 22 38999988642110
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeecc-ccCCCCccCCCchHHHHHHHHHhCCCeEEec
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFN-TYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~-i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
....+...|+.+|++.|.+++.++.++ +++++.|.|+. +-.+. ......+.
T Consensus 156 -------~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~------------~~~~~~~~------ 210 (273)
T PRK08278 156 -------KWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAA------------VRNLLGGD------ 210 (273)
T ss_pred -------cccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHH------------HHhccccc------
Confidence 101234789999999999999998765 89999999984 33221 11111111
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.....+...+|+|++++.++...
T Consensus 211 --~~~~~~~~p~~va~~~~~l~~~~ 233 (273)
T PRK08278 211 --EAMRRSRTPEIMADAAYEILSRP 233 (273)
T ss_pred --ccccccCCHHHHHHHHHHHhcCc
Confidence 11123678899999999998764
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-16 Score=145.59 Aligned_cols=202 Identities=11% Similarity=0.057 Sum_probs=136.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+|+++||||+|+||+++++.|+++|++|++++|+..... ...... ...++.++.+|+.++. +.++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLE-EAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 578999999999999999999999999999998643221 111111 1246788999987752 2358
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
|+||||||......... .....+++|+.++.++++++.+ .+ .+||++||...+.
T Consensus 80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~---------------- 143 (252)
T PRK07677 80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD---------------- 143 (252)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc----------------
Confidence 99999998643222211 2456899999999999998743 22 3899999875331
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh----hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
+......|+.+|++.+.+++.++.+ +|+++..++||.+.++...... .........+.+..++ ..+
T Consensus 144 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~ 213 (252)
T PRK07677 144 AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKL-WESEEAAKRTIQSVPL---------GRL 213 (252)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccc-cCCHHHHHHHhccCCC---------CCC
Confidence 1112257999999999999998765 3899999999998854321000 0001222222222111 135
Q ss_pred ccHHHHHHHHHHHHcCC
Q 013226 327 QFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~ 343 (447)
...+|+++++..++...
T Consensus 214 ~~~~~va~~~~~l~~~~ 230 (252)
T PRK07677 214 GTPEEIAGLAYFLLSDE 230 (252)
T ss_pred CCHHHHHHHHHHHcCcc
Confidence 67899999999988754
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=147.44 Aligned_cols=212 Identities=21% Similarity=0.257 Sum_probs=144.5
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccCCCC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACPASP 192 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~~~~ 192 (447)
|+|+||||.+|+++++.|++.+++|+++.|+.... ....+....++++.+|..+. ++.++|+||.+.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~---~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSD---RAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHH---HHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchh---hhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence 79999999999999999999999999999965221 11112223567778877554 5789999998876432
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHH
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTM 270 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 270 (447)
...+....+++++|+++|+ +||+ ||.. .+... ....|.......|...|+.++
T Consensus 77 -----------~~~~~~~~~li~Aa~~agVk~~v~-ss~~~~~~~~-------------~~~~p~~~~~~~k~~ie~~l~ 131 (233)
T PF05368_consen 77 -----------PSELEQQKNLIDAAKAAGVKHFVP-SSFGADYDES-------------SGSEPEIPHFDQKAEIEEYLR 131 (233)
T ss_dssp -----------CCHHHHHHHHHHHHHHHT-SEEEE-SEESSGTTTT-------------TTSTTHHHHHHHHHHHHHHHH
T ss_pred -----------hhhhhhhhhHHHhhhccccceEEE-EEeccccccc-------------ccccccchhhhhhhhhhhhhh
Confidence 1334556789999999999 6664 5543 32110 111122345567888877765
Q ss_pred HHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHH-----HhCC--CeEEecCCCeeEccc-cHHHHHHHHHHHHcC
Q 013226 271 DYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQA-----LRKE--PLTVYGDGKQTRSFQ-FVSDLVEGLIRLMEG 342 (447)
Q Consensus 271 ~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~i-~v~D~a~ai~~~l~~ 342 (447)
+ .+++++++|||..+. +++... .... .+.++++++....++ +.+|++++++.++.+
T Consensus 132 ~----~~i~~t~i~~g~f~e------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~ 195 (233)
T PF05368_consen 132 E----SGIPYTIIRPGFFME------------NLLPPFAPVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLD 195 (233)
T ss_dssp H----CTSEBEEEEE-EEHH------------HHHTTTHHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHS
T ss_pred h----ccccceeccccchhh------------hhhhhhcccccccccceEEEEccCCCccccccccHHHHHHHHHHHHcC
Confidence 5 599999999987553 222211 1121 356667777666675 999999999999988
Q ss_pred CCC---C-cEEecCCCccCHHHHHHHHHHHhCCCCcE
Q 013226 343 DHV---G-PFNLGNPGEFTMLELAEVVQEIIDRNARI 375 (447)
Q Consensus 343 ~~~---g-~~~i~~~~~~s~~el~~~i~~~~g~~~~~ 375 (447)
+.. + .+.++ ++.+|++|+++.+.+.+|++..+
T Consensus 196 p~~~~~~~~~~~~-~~~~t~~eia~~~s~~~G~~v~y 231 (233)
T PF05368_consen 196 PEKHNNGKTIFLA-GETLTYNEIAAILSKVLGKKVKY 231 (233)
T ss_dssp GGGTTEEEEEEEG-GGEEEHHHHHHHHHHHHTSEEEE
T ss_pred hHHhcCCEEEEeC-CCCCCHHHHHHHHHHHHCCccEE
Confidence 632 2 55655 48899999999999999987554
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=145.00 Aligned_cols=204 Identities=16% Similarity=0.122 Sum_probs=140.1
Q ss_pred cCCCCeEEEEcCCC-hhHHHHHHHHHhCCCeEEEEecCCCCCccc---cccccCCCceEEEeccccccc-----------
Q 013226 112 QRKSLRILVTGGAG-FVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIHHFGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG-~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~----------- 176 (447)
.+.+++++||||+| +||.++++.|+++|++|++++|+.....+. +....+..++.++.+|+.+..
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 34678999999997 799999999999999999998864322211 111112246788889987652
Q ss_pred -ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCc
Q 013226 177 -LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+..+|+||||||......... .....+++|+.++..+++++.+ .+ .++|++||...+.
T Consensus 94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~----------- 162 (262)
T PRK07831 94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR----------- 162 (262)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC-----------
Confidence 236899999999754332222 2445788999999888887643 33 3889988865321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.+|++.+.+++.++.+ +++++++|+||.+..|...... ............++
T Consensus 163 -----~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~---~~~~~~~~~~~~~~-------- 226 (262)
T PRK07831 163 -----AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT---SAELLDELAAREAF-------- 226 (262)
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc---CHHHHHHHHhcCCC--------
Confidence 1122367999999999999999866 5899999999999887532110 12222222222211
Q ss_pred eEccccHHHHHHHHHHHHcCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.-+...+|+|+++++++...
T Consensus 227 -~r~~~p~~va~~~~~l~s~~ 246 (262)
T PRK07831 227 -GRAAEPWEVANVIAFLASDY 246 (262)
T ss_pred -CCCcCHHHHHHHHHHHcCch
Confidence 22567799999999998764
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=144.83 Aligned_cols=201 Identities=17% Similarity=0.107 Sum_probs=133.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++++|+||||+|+||.+++++|+++|++|++++|+..... ...... ...++.+|+.+.. ..++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~-~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGK-AAADEV---GGLFVPTDVTDEDAVNALFDTAAETYGSV 80 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHc---CCcEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999998643211 111111 1256777876642 1358
Q ss_pred CEEEEeccCCCCC--Cc-c---cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCC
Q 013226 181 DQIYHLACPASPV--HY-K---FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSE-VYGDPLQHPQAETYWGN 248 (447)
Q Consensus 181 d~Vih~Ag~~~~~--~~-~---~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~ 248 (447)
|+||||||...+. .. + ......+++|+.++..+++.+. +.+. ++|++||.. +++..
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~------------ 148 (255)
T PRK06057 81 DIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSA------------ 148 (255)
T ss_pred CEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCC------------
Confidence 9999999975321 11 1 1245688999999888777653 3443 899999864 44421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
.....|+.+|++.+.+++.++.+ .++++++++||.+.+|............. ...+. ..+ ...
T Consensus 149 ----~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~-~~~~~--~~~-------~~~ 214 (255)
T PRK06057 149 ----TSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERA-ARRLV--HVP-------MGR 214 (255)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHH-HHHHh--cCC-------CCC
Confidence 11257999999888888877653 38999999999998875321000000110 11111 111 124
Q ss_pred cccHHHHHHHHHHHHcCC
Q 013226 326 FQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~ 343 (447)
+..++|+++++..++...
T Consensus 215 ~~~~~~~a~~~~~l~~~~ 232 (255)
T PRK06057 215 FAEPEEIAAAVAFLASDD 232 (255)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 788999999999888653
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.6e-16 Score=146.77 Aligned_cols=157 Identities=13% Similarity=0.048 Sum_probs=116.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCCCE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEVDQ 182 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~ 182 (447)
+|+++||||+|+||++++++|+++|++|++++|+..... .+ ...++.++.+|+.+.. ..++|+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 75 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVE-AL----AAAGFTAVQLDVNDGAALARLAEELEAEHGGLDV 75 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HH----HHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 368999999999999999999999999999998643211 11 1124667788886642 136899
Q ss_pred EEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH---CC-CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 183 IYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR---VG-ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 183 Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~---~g-~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
||||||........ ++....+++|+.|+.++++++.. .+ .++|++||...+.. ...
T Consensus 76 vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~----------------~~~ 139 (274)
T PRK05693 76 LINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLV----------------TPF 139 (274)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCC----------------CCC
Confidence 99999975433322 23456889999999999888643 23 38999999763311 111
Q ss_pred CChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCC
Q 013226 255 RSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPR 292 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~ 292 (447)
...|+.+|+..+.+++.++.+ .|+++++++||.+.++-
T Consensus 140 ~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 140 AGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF 180 (274)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence 367999999999999888765 59999999999997653
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=144.59 Aligned_cols=209 Identities=14% Similarity=0.086 Sum_probs=138.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccccccCCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHHFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+ .+.......++..+.+|+.+..
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999996543221 1111111236778888987763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||......... .....+++|+.++..+++++ ++.+. +||++||...+..
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 152 (265)
T PRK07062 85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQP------------ 152 (265)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCC------------
Confidence 245899999999754333222 24457889988877776654 33443 9999999764321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC------CCchHHHHHHHHHhCCCeEEec
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID------DGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
......|+.+|++.+.+++.++.+ .|+++++++||.+..+..... .......+.........++
T Consensus 153 ----~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--- 225 (265)
T PRK07062 153 ----EPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIP--- 225 (265)
T ss_pred ----CCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCC---
Confidence 112367999999999999988765 489999999999876532100 0000011111111111111
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
..-+...+|+|+++++++...
T Consensus 226 ----~~r~~~p~~va~~~~~L~s~~ 246 (265)
T PRK07062 226 ----LGRLGRPDEAARALFFLASPL 246 (265)
T ss_pred ----cCCCCCHHHHHHHHHHHhCch
Confidence 123567899999999998753
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=144.48 Aligned_cols=215 Identities=16% Similarity=0.101 Sum_probs=143.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+|+||||+|+||.+++++|+++|++|++++|+...... ....+ ...++.++.+|+.+.. +
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEE-TVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999999986442211 11111 1235788889987652 2
Q ss_pred cCCCEEEEeccCCCCCC-c-c---cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVH-Y-K---FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~-~-~---~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
..+|+||||||...... . + ++..+.+++|+.++..+++++ ++.+. ++|++||...+..
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~------------ 150 (253)
T PRK06172 83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGA------------ 150 (253)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccC------------
Confidence 35799999999743221 1 1 234567899999998776654 33444 8999999875532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
......|+.+|++.+.+++.++.++ ++++.+++||.+-.+........ ............+ ..
T Consensus 151 ----~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~-~~~~~~~~~~~~~---------~~ 216 (253)
T PRK06172 151 ----APKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEA-DPRKAEFAAAMHP---------VG 216 (253)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhccc-ChHHHHHHhccCC---------CC
Confidence 1223789999999999999998764 79999999998876542110000 0111111111111 11
Q ss_pred ccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
.+...+|+++.+++++.+. ..| .+.+.++
T Consensus 217 ~~~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg 249 (253)
T PRK06172 217 RIGKVEEVASAVLYLCSDGASFTTGHALMVDGG 249 (253)
T ss_pred CccCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 2567899999999998764 235 4455443
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-16 Score=147.20 Aligned_cols=204 Identities=16% Similarity=0.087 Sum_probs=137.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++|+++||||+|+||++++++|+++|++|++++|+.... +.+.... ..++.++.+|+.+.. +..+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKL-ASLRQRF-GDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHh-CCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 5688999999999999999999999999999999864322 1121111 235677888887652 2358
Q ss_pred CEEEEeccCCCC-CCc-ccC-------hHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 181 DQIYHLACPASP-VHY-KFN-------PVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 181 d~Vih~Ag~~~~-~~~-~~~-------~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
|++|||||+... ... +.+ ..+.+++|+.++..+++++.. .+.++|++||...+..
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------ 149 (263)
T PRK06200 82 DCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYP------------ 149 (263)
T ss_pred CEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCC------------
Confidence 999999997532 111 111 345688999998888887653 3348999999875421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCC----Cch---HHHHHHHHHhCCCeEEec
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDD----GRV---VSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~----~~~---~~~~~~~~~~~~~~~~~~ 318 (447)
......|+.+|++.+.+++.++.++ ++++..|.||.+..+-..... ... ........... .+
T Consensus 150 ----~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p--- 220 (263)
T PRK06200 150 ----GGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAI--TP--- 220 (263)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcC--CC---
Confidence 1123679999999999999998764 599999999998766321100 000 01111111111 11
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
..-+...+|+|+++++++...
T Consensus 221 ----~~r~~~~~eva~~~~fl~s~~ 241 (263)
T PRK06200 221 ----LQFAPQPEDHTGPYVLLASRR 241 (263)
T ss_pred ----CCCCCCHHHHhhhhhheeccc
Confidence 123677899999999998755
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=146.92 Aligned_cols=214 Identities=12% Similarity=0.094 Sum_probs=144.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~-V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
+++|+|+||||+|+||++++++|+++|++ |++++|+...... ....+ ....+.++..|+.++. +
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEA-QAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHH-HHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57789999999999999999999999998 9999886432221 11111 1235677888887652 1
Q ss_pred cCCCEEEEeccCCCCCCcc-c---ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVHYK-F---NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~-~---~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||........ . .....+++|+.++.++++++.+ .+ .++|++||...++...
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~---------- 152 (260)
T PRK06198 83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQP---------- 152 (260)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCCC----------
Confidence 3589999999975432221 1 2345789999999999887743 22 2799999988654311
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCC---chHHHHHHHHHhCCCeEEecCCC
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDG---RVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
....|+.+|...|.+++.++.++ +++++.++||.++++....... .....++.......
T Consensus 153 ------~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~--------- 217 (260)
T PRK06198 153 ------FLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQ--------- 217 (260)
T ss_pred ------CcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccC---------
Confidence 12679999999999999987654 6999999999999875310000 01112222211111
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---CC-cEEecC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGN 352 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~ 352 (447)
....+++++|+++++++++.+.. .| .+.+.+
T Consensus 218 ~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~ 252 (260)
T PRK06198 218 PFGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQ 252 (260)
T ss_pred CccCCcCHHHHHHHHHHHcChhhCCccCceEeECC
Confidence 12346899999999999986542 34 455543
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-15 Score=141.58 Aligned_cols=209 Identities=15% Similarity=0.135 Sum_probs=139.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEVD 181 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d 181 (447)
|+++||||+|+||++++++|+++|++|+++.|+.....+...... ...++.++.+|+.++. ...+|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID 80 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence 579999999999999999999999999998883222111111111 1236788889987653 23589
Q ss_pred EEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 182 QIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+||||||......... +..+.+++|+.++..++++ +++.+. +||++||...... .
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~----------------~ 144 (242)
T TIGR01829 81 VLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKG----------------Q 144 (242)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCC----------------C
Confidence 9999999754332222 2456789999998776555 445555 8999999753211 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
.....|+.+|...+.+++.++.+ .++++++++|+.+.++.... +...++.......++ ..+...
T Consensus 145 ~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~----~~~~~~~~~~~~~~~---------~~~~~~ 211 (242)
T TIGR01829 145 FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMA----MREDVLNSIVAQIPV---------GRLGRP 211 (242)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccc----cchHHHHHHHhcCCC---------CCCcCH
Confidence 12367999999999998888754 48999999999998875321 112233332222221 124566
Q ss_pred HHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 330 SDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+|+++++.+++.++. .| .+.+.++
T Consensus 212 ~~~a~~~~~l~~~~~~~~~G~~~~~~gg 239 (242)
T TIGR01829 212 EEIAAAVAFLASEEAGYITGATLSINGG 239 (242)
T ss_pred HHHHHHHHHHcCchhcCccCCEEEecCC
Confidence 899999988876642 23 5565544
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-16 Score=161.60 Aligned_cols=213 Identities=16% Similarity=0.178 Sum_probs=144.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
...+|+++||||+|+||.+++++|+++|++|++++|+.... +.+.... ..++..+.+|+.++. +..
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGA-KKLAEAL-GDEHLSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHh-CCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35789999999999999999999999999999999864322 1122111 234567888887763 235
Q ss_pred CCEEEEeccCCCC-CCc-c---cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 180 VDQIYHLACPASP-VHY-K---FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 180 ~d~Vih~Ag~~~~-~~~-~---~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
+|+||||||.... ... + .....++++|+.|+.++++++... +.+||++||.+.+. +
T Consensus 344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~ 407 (520)
T PRK06484 344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL----------------A 407 (520)
T ss_pred CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC----------------C
Confidence 8999999997532 111 1 124568999999999999887653 23899999987432 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
......|+.+|+..+.+++.++.++ |+++++|+||.|.++........ -........+..++ ..+..
T Consensus 408 ~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~ 477 (520)
T PRK06484 408 LPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKAS-GRADFDSIRRRIPL---------GRLGD 477 (520)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccc-cHHHHHHHHhcCCC---------CCCcC
Confidence 1223789999999999999998764 89999999999987642100000 00011111121111 12567
Q ss_pred HHHHHHHHHHHHcCC---CCC-cEEecC
Q 013226 329 VSDLVEGLIRLMEGD---HVG-PFNLGN 352 (447)
Q Consensus 329 v~D~a~ai~~~l~~~---~~g-~~~i~~ 352 (447)
++|+|+++++++... ..| .+.+.+
T Consensus 478 ~~dia~~~~~l~s~~~~~~~G~~i~vdg 505 (520)
T PRK06484 478 PEEVAEAIAFLASPAASYVNGATLTVDG 505 (520)
T ss_pred HHHHHHHHHHHhCccccCccCcEEEECC
Confidence 899999999999754 235 444443
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=146.57 Aligned_cols=212 Identities=15% Similarity=0.079 Sum_probs=139.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC--------CCcccccccc--CCCceEEEeccccccc------
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT--------GKKDNLIHHF--GNPRFELIRHDVVEPI------ 176 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~--------~~~~~~~~~~--~~~~v~~~~~D~~~~~------ 176 (447)
+++|+++||||+++||.+++++|+++|++|++++++.. ...+.....+ ...++.++.+|+++..
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 57899999999999999999999999999999987541 1111111111 1235677888987742
Q ss_pred ------ccCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----C---C----CeEEEEeCccccCC
Q 013226 177 ------LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----V---G----ARFLLTSTSEVYGD 235 (447)
Q Consensus 177 ------~~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~---g----~r~v~~SS~~v~g~ 235 (447)
+..+|++|||||........ ......+++|+.++..+++++.. . + .+||++||...+.
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~- 162 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ- 162 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc-
Confidence 24689999999975433222 23456899999999888877642 1 1 3899999976321
Q ss_pred CCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCC
Q 013226 236 PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKE 312 (447)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~ 312 (447)
+......|+.+|++.+.+++.++.+ .|++++.|.|| +..+.. ...........
T Consensus 163 ---------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~--------~~~~~~~~~~~ 218 (286)
T PRK07791 163 ---------------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMT--------ETVFAEMMAKP 218 (286)
T ss_pred ---------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcc--------hhhHHHHHhcC
Confidence 1112367999999999999998875 58999999997 432210 11111111111
Q ss_pred CeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCCcEEecCCCcc
Q 013226 313 PLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVGPFNLGNPGEF 356 (447)
Q Consensus 313 ~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g~~~i~~~~~~ 356 (447)
+ . ....+...+|+|+++++++... ..|.+...+++..
T Consensus 219 ~-----~--~~~~~~~pedva~~~~~L~s~~~~~itG~~i~vdgG~~ 258 (286)
T PRK07791 219 E-----E--GEFDAMAPENVSPLVVWLGSAESRDVTGKVFEVEGGKI 258 (286)
T ss_pred c-----c--cccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEcCCce
Confidence 0 1 1113567899999999998753 3454444444433
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-16 Score=134.21 Aligned_cols=212 Identities=17% Similarity=0.103 Sum_probs=153.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.++.+..+||||+++||++++..|++.|++|.+.+++....++......+..+-..+.+|+.++. +..
T Consensus 11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~ 90 (256)
T KOG1200|consen 11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGT 90 (256)
T ss_pred HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCC
Confidence 35667899999999999999999999999999999876654443333333356677888886652 235
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC-------CCeEEEEeCcc-ccCCCCCCCCCCCcCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV-------GARFLLTSTSE-VYGDPLQHPQAETYWG 247 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~-------g~r~v~~SS~~-v~g~~~~~~~~e~~~~ 247 (447)
+++++||||+..+...- ++++..+.+|+.|+..+.+++.+. +.+||.+||+- ..|+..+
T Consensus 91 psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQ--------- 161 (256)
T KOG1200|consen 91 PSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQ--------- 161 (256)
T ss_pred CcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccc---------
Confidence 89999999998654332 346678999999998888876543 23899999964 3343322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
++|.++|...-.+.+..++| .+|++.++.||+|-.|-. ..+.+..+..+...-|+-.+|
T Consensus 162 --------tnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT----~~mp~~v~~ki~~~iPmgr~G------ 223 (256)
T KOG1200|consen 162 --------TNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMT----EAMPPKVLDKILGMIPMGRLG------ 223 (256)
T ss_pred --------hhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhh----hhcCHHHHHHHHccCCccccC------
Confidence 78999998887777776665 489999999999988753 223356667777766665444
Q ss_pred ccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
..+|+|..++++..... .| .+.+.++
T Consensus 224 ---~~EevA~~V~fLAS~~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 224 ---EAEEVANLVLFLASDASSYITGTTLEVTGG 253 (256)
T ss_pred ---CHHHHHHHHHHHhccccccccceeEEEecc
Confidence 45899999998885432 23 5555543
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=142.22 Aligned_cols=195 Identities=16% Similarity=0.120 Sum_probs=135.2
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCCCEE
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEVDQI 183 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d~V 183 (447)
|+||||+|+||.++++.|+++|++|++++|+.....+.....+ ...++.++.+|+.+.. ...+|++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l 80 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV 80 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 6899999999999999999999999999875432222222111 1236888899987652 2358999
Q ss_pred EEeccCCCCCCc----ccChHHHHHHHHHHHHHHHHHHH-----HCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCCCC
Q 013226 184 YHLACPASPVHY----KFNPVKTIKTNVVGTLNMLGLAK-----RVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 184 ih~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~aa~-----~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~ 252 (447)
|||||....... ..++...+++|+.++.++++++. +.+. +||++||.. .++.+
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~---------------- 144 (239)
T TIGR01831 81 VLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNR---------------- 144 (239)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCC----------------
Confidence 999997543321 22356689999999999988752 2333 899999976 44321
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
....|+.+|++.+.+++.++.+ .|++++.++||.+.++.... . ..........-++ .-+...
T Consensus 145 -~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~-~~~~~~~~~~~~~---------~~~~~~ 209 (239)
T TIGR01831 145 -GQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAE----V-EHDLDEALKTVPM---------NRMGQP 209 (239)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchh----h-hHHHHHHHhcCCC---------CCCCCH
Confidence 2267999999999999888765 48999999999998765321 1 1111222222111 124577
Q ss_pred HHHHHHHHHHHcCC
Q 013226 330 SDLVEGLIRLMEGD 343 (447)
Q Consensus 330 ~D~a~ai~~~l~~~ 343 (447)
+|+++++++++..+
T Consensus 210 ~~va~~~~~l~~~~ 223 (239)
T TIGR01831 210 AEVASLAGFLMSDG 223 (239)
T ss_pred HHHHHHHHHHcCch
Confidence 99999999998864
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=145.55 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=118.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++++..... ..++.++.+|+.++. +..
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 77 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ--------HENYQFVPTDVSSAEEVNHTVAEIIEKFGR 77 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc--------cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999988643321 135778888987763 235
Q ss_pred CCEEEEeccCCCCCC-------------cccChHHHHHHHHHHHHHHHHHHHHC----CC-eEEEEeCccccCCCCCCCC
Q 013226 180 VDQIYHLACPASPVH-------------YKFNPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHPQ 241 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~-------------~~~~~~~~~~~Nv~gt~~ll~aa~~~----g~-r~v~~SS~~v~g~~~~~~~ 241 (447)
+|+||||||...... ...+....+++|+.++..+++++.+. +. +||++||...+..
T Consensus 78 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------ 151 (266)
T PRK06171 78 IDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEG------ 151 (266)
T ss_pred CCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCC------
Confidence 899999999643211 11124558899999999999887642 33 8999999864321
Q ss_pred CCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeecccc
Q 013226 242 AETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTY 289 (447)
Q Consensus 242 ~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~ 289 (447)
......|+.+|++.+.+++.++.+ .|+++.+|+||.+.
T Consensus 152 ----------~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 152 ----------SEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE 192 (266)
T ss_pred ----------CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence 112378999999999999999865 48999999999875
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=142.90 Aligned_cols=204 Identities=15% Similarity=0.031 Sum_probs=136.6
Q ss_pred ccCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCCCc--cccccccCCCceEEEeccccccc----------
Q 013226 111 LQRKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTGKK--DNLIHHFGNPRFELIRHDVVEPI---------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~~~--~~~~~~~~~~~v~~~~~D~~~~~---------- 176 (447)
.++++|+++||||+ ++||++++++|+++|++|++++|+....+ +++.... ....++.+|+.+..
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~ 83 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIA 83 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHH
Confidence 34678999999998 59999999999999999999988632111 1111111 23457888987652
Q ss_pred --ccCCCEEEEeccCCCCC----Cc-c---cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCC
Q 013226 177 --LLEVDQIYHLACPASPV----HY-K---FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~~----~~-~---~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e 243 (447)
+..+|++|||||..... .. + ++....+++|+.++..+++++... +.++|++||....
T Consensus 84 ~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~---------- 153 (258)
T PRK07533 84 EEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAE---------- 153 (258)
T ss_pred HHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccc----------
Confidence 24589999999975321 11 1 124568999999999998876542 2389999986531
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
.+......|+.+|++.+.+++.++.+ .|+++.+|.||.+-.+-.... .. ............ +
T Consensus 154 ------~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~-~~-~~~~~~~~~~~~--p----- 218 (258)
T PRK07533 154 ------KVVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGI-DD-FDALLEDAAERA--P----- 218 (258)
T ss_pred ------cCCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhcc-CC-cHHHHHHHHhcC--C-----
Confidence 11112367999999999999998865 489999999998876532100 00 011222222211 1
Q ss_pred CeeEccccHHHHHHHHHHHHcCC
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
...+...+|+|.++++++.++
T Consensus 219 --~~r~~~p~dva~~~~~L~s~~ 239 (258)
T PRK07533 219 --LRRLVDIDDVGAVAAFLASDA 239 (258)
T ss_pred --cCCCCCHHHHHHHHHHHhChh
Confidence 113568899999999998764
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=141.03 Aligned_cols=197 Identities=13% Similarity=0.059 Sum_probs=135.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------ccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+++++|+||||+|+||.++++.|+++|++|++++|+..... .+... ....++.++.+|+.++. ..+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLK-RMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999643221 11111 11235788899987652 235
Q ss_pred CCEEEEeccCCCCCCcc--cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 180 VDQIYHLACPASPVHYK--FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
+|.+||++|........ ......+++|+.++..+++.+.+. +.++|++||..... .+..+
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~---------------~~~~~ 146 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIY---------------KASPD 146 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcc---------------cCCCC
Confidence 79999999854321111 224457889999988888876553 34899999875311 11122
Q ss_pred CChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHH
Q 013226 255 RSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 331 (447)
...|+.+|...+.+++.++.+. +++++++||++++++... . .. ... .. . ....++..+|
T Consensus 147 ~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~---~----~~----~~~--~~---~--~~~~~~~~~~ 208 (238)
T PRK05786 147 QLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEP---E----RN----WKK--LR---K--LGDDMAPPED 208 (238)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCc---h----hh----hhh--hc---c--ccCCCCCHHH
Confidence 3679999999999999887654 899999999999987421 0 00 000 00 0 0012567899
Q ss_pred HHHHHHHHHcCC
Q 013226 332 LVEGLIRLMEGD 343 (447)
Q Consensus 332 ~a~ai~~~l~~~ 343 (447)
+++++++++..+
T Consensus 209 va~~~~~~~~~~ 220 (238)
T PRK05786 209 FAKVIIWLLTDE 220 (238)
T ss_pred HHHHHHHHhccc
Confidence 999999998753
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=143.31 Aligned_cols=194 Identities=19% Similarity=0.160 Sum_probs=133.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc---cCCCceEEEeccccc--c-----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH---FGNPRFELIRHDVVE--P----------- 175 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~D~~~--~----------- 175 (447)
.+++|+|+||||+|+||.+++++|+++|++|++++|+..... .+... ....++.++..|+.+ .
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLE-AVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 458899999999999999999999999999999998643221 11111 122345566666642 1
Q ss_pred -cccCCCEEEEeccCCCCCC-c-c---cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCC
Q 013226 176 -ILLEVDQIYHLACPASPVH-Y-K---FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 176 -~~~~~d~Vih~Ag~~~~~~-~-~---~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
.+..+|+||||||...... + + ....+.+++|+.|+.++++++. +.+. +||++||......
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~--------- 158 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQG--------- 158 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCC---------
Confidence 1246899999998753311 1 1 2345689999999888888764 4444 8999999763211
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
......|+.+|++.+.+++.++.+. ++++++++|+.+-++... ...... +
T Consensus 159 -------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~------------~~~~~~------~-- 211 (247)
T PRK08945 159 -------RANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRA------------SAFPGE------D-- 211 (247)
T ss_pred -------CCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchh------------hhcCcc------c--
Confidence 1122579999999999999987654 789999999887654210 000000 0
Q ss_pred eeEccccHHHHHHHHHHHHcCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
...+...+|+++++++++.+.
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~~ 232 (247)
T PRK08945 212 -PQKLKTPEDIMPLYLYLMGDD 232 (247)
T ss_pred -ccCCCCHHHHHHHHHHHhCcc
Confidence 113678899999999988654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=143.83 Aligned_cols=202 Identities=13% Similarity=0.086 Sum_probs=130.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc------------ccCCCE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI------------LLEVDQ 182 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~~~d~ 182 (447)
|+++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +.++|+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEK-ALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 579999999999999999999999999999986432211 11111 1125778889987652 246999
Q ss_pred EEEeccCCCCC--Cccc-C---hHHHHHHHHHHHHHHHHH----HH-HCC-CeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 183 IYHLACPASPV--HYKF-N---PVKTIKTNVVGTLNMLGL----AK-RVG-ARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 183 Vih~Ag~~~~~--~~~~-~---~~~~~~~Nv~gt~~ll~a----a~-~~g-~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
||||||..... ...+ . ..+.+.+|+.++..+.++ +. +.+ .+||++||.....
T Consensus 80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~---------------- 143 (259)
T PRK08340 80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE---------------- 143 (259)
T ss_pred EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC----------------
Confidence 99999964311 1111 2 234567788776555443 32 223 3899999987532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCC-------chHHH-HHHHHHhCCCeEEecC
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDG-------RVVSN-FVAQALRKEPLTVYGD 319 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~ 319 (447)
+......|+.+|+..+.+++.++.++ |+++..|.||.+-.|....... .-... ........ .+
T Consensus 144 ~~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p---- 217 (259)
T PRK08340 144 PMPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLER--TP---- 217 (259)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhcc--CC----
Confidence 22234689999999999999998764 7999999999887764210000 00000 00111111 11
Q ss_pred CCeeEccccHHHHHHHHHHHHcCC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
..-+...+|+|+++++++..+
T Consensus 218 ---~~r~~~p~dva~~~~fL~s~~ 238 (259)
T PRK08340 218 ---LKRTGRWEELGSLIAFLLSEN 238 (259)
T ss_pred ---ccCCCCHHHHHHHHHHHcCcc
Confidence 123567899999999999864
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=143.86 Aligned_cols=202 Identities=13% Similarity=0.059 Sum_probs=134.8
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCCCCC--ccccccccCCCceEEEeccccccc------------
Q 013226 113 RKSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYFTGK--KDNLIHHFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 113 ~~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~~~~--~~~~~~~~~~~~v~~~~~D~~~~~------------ 176 (447)
+++|+++||||++ +||++++++|+++|++|++.+|+.... .+++....+ ...++.+|+++..
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g--~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG--SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC--CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 5788999999997 999999999999999999988753211 011111111 2246788987763
Q ss_pred ccCCCEEEEeccCCCCC----Ccc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCc
Q 013226 177 LLEVDQIYHLACPASPV----HYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~----~~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+..+|++|||||..... .+. ++....+++|+.++.++++++... +.++|++||.....
T Consensus 83 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~----------- 151 (271)
T PRK06505 83 WGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR----------- 151 (271)
T ss_pred hCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc-----------
Confidence 24699999999975321 111 224567899999999888876532 24899999975321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.+|++.+.+++.++.++ |++++.|.||.+-.+....... ............++
T Consensus 152 -----~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~--~~~~~~~~~~~~p~-------- 216 (271)
T PRK06505 152 -----VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGD--ARAIFSYQQRNSPL-------- 216 (271)
T ss_pred -----cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcc--hHHHHHHHhhcCCc--------
Confidence 11123679999999999999998764 8999999999987753210000 00111111111111
Q ss_pred eEccccHHHHHHHHHHHHcCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.-+...+|+|+++++++...
T Consensus 217 -~r~~~peeva~~~~fL~s~~ 236 (271)
T PRK06505 217 -RRTVTIDEVGGSALYLLSDL 236 (271)
T ss_pred -cccCCHHHHHHHHHHHhCcc
Confidence 12467899999999999754
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=145.26 Aligned_cols=202 Identities=12% Similarity=0.031 Sum_probs=134.4
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCC--CccccccccCCCceEEEeccccccc------------
Q 013226 113 RKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTG--KKDNLIHHFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 113 ~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~--~~~~~~~~~~~~~v~~~~~D~~~~~------------ 176 (447)
+++|+++||||+ ++||++++++|+++|++|++.+|+... ..+.+...... . ..+.+|+.+..
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~-~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS-D-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC-c-eEEEecCCCHHHHHHHHHHHHHH
Confidence 468999999997 799999999999999999999886310 11111111121 2 56788987763
Q ss_pred ccCCCEEEEeccCCCC----CCc-c---cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCc
Q 013226 177 LLEVDQIYHLACPASP----VHY-K---FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~----~~~-~---~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+.++|++|||||.... ... + +.....+++|+.++..+++++... +.+||++||.+...
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~----------- 149 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK----------- 149 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc-----------
Confidence 2458999999997532 111 1 124568999999999888876542 24899999965321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.||++.+.+++.++.+ .|+++.+|.||.|..+.... ...+ .... .... ...+
T Consensus 150 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~~~-~~~~-~~~~-~~~p------- 213 (274)
T PRK08415 150 -----YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASG-IGDF-RMIL-KWNE-INAP------- 213 (274)
T ss_pred -----CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhc-cchh-hHHh-hhhh-hhCc-------
Confidence 1112367999999999999999875 48999999999987652110 0000 0000 0000 0111
Q ss_pred eEccccHHHHHHHHHHHHcCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~ 343 (447)
..-+...+|+|+++++++...
T Consensus 214 l~r~~~pedva~~v~fL~s~~ 234 (274)
T PRK08415 214 LKKNVSIEEVGNSGMYLLSDL 234 (274)
T ss_pred hhccCCHHHHHHHHHHHhhhh
Confidence 112577899999999999753
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=141.28 Aligned_cols=205 Identities=10% Similarity=0.004 Sum_probs=136.5
Q ss_pred cCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCC--CccccccccCCCceEEEeccccccc-----------
Q 013226 112 QRKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTG--KKDNLIHHFGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~--~~~~~~~~~~~~~v~~~~~D~~~~~----------- 176 (447)
++++|+++||||+ ++||.+++++|+++|++|++++|.... ..+++.......++.++.+|+.++.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 4578999999997 899999999999999999998875211 1112222222345778889997763
Q ss_pred -ccCCCEEEEeccCCCC----CCc-ccC---hHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCC
Q 013226 177 -LLEVDQIYHLACPASP----VHY-KFN---PVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~----~~~-~~~---~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+..+|++|||||.... ... +.+ ....+++|+.++..+++++... +.+||++||....
T Consensus 84 ~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~----------- 152 (257)
T PRK08594 84 EVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGE----------- 152 (257)
T ss_pred hCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCc-----------
Confidence 2459999999997531 111 112 3457889999988888776543 2389999997532
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
.+......|+.||++.+.+++.++.++ |+++..|.||.+..+...... .+ .......... .+
T Consensus 153 -----~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~-~~-~~~~~~~~~~--~p------ 217 (257)
T PRK08594 153 -----RVVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVG-GF-NSILKEIEER--AP------ 217 (257)
T ss_pred -----cCCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhc-cc-cHHHHHHhhc--CC------
Confidence 111123679999999999999998754 899999999988765211000 00 0111111111 11
Q ss_pred eeEccccHHHHHHHHHHHHcCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
...+...+|+|+++++++...
T Consensus 218 -~~r~~~p~~va~~~~~l~s~~ 238 (257)
T PRK08594 218 -LRRTTTQEEVGDTAAFLFSDL 238 (257)
T ss_pred -ccccCCHHHHHHHHHHHcCcc
Confidence 123567899999999998754
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-15 Score=144.90 Aligned_cols=191 Identities=14% Similarity=0.122 Sum_probs=132.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccccccCCCceEEEecccccc----------ccc--
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHHFGNPRFELIRHDVVEP----------ILL-- 178 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~D~~~~----------~~~-- 178 (447)
.|+.++||||+|+||++++++|+++|++|++++|+.+...+ ++.......++..+.+|+.+. .+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 57899999999999999999999999999999997543221 111111123566677777631 112
Q ss_pred CCCEEEEeccCCCC--CCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 179 EVDQIYHLACPASP--VHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~--~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
++|++|||||.... ..+.+ +....+++|+.|+..+++++. +.+. ++|++||...+..+
T Consensus 132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~----------- 200 (320)
T PLN02780 132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP----------- 200 (320)
T ss_pred CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC-----------
Confidence 36699999997532 11222 234589999999998888764 3444 99999998754210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.||+..+.+.+.++.+. |+++++++||.+-.+-.. ..... .
T Consensus 201 ---~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~--------------~~~~~----------~ 253 (320)
T PLN02780 201 ---SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMAS--------------IRRSS----------F 253 (320)
T ss_pred ---CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCccc--------------ccCCC----------C
Confidence 01123789999999999999998764 899999999988764210 00000 0
Q ss_pred ccccHHHHHHHHHHHHcC
Q 013226 325 SFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~ 342 (447)
..+..+++|+.++..+..
T Consensus 254 ~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 254 LVPSSDGYARAALRWVGY 271 (320)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 135789999999999864
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=160.60 Aligned_cols=211 Identities=12% Similarity=0.050 Sum_probs=140.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------ 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------ 177 (447)
...+++++||||+|+||++++++|+++|++|++++|+.+... .+.... ...++.++.+|+++...
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAE-RTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999998643222 111111 12367889999987632
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCC--CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
..+|+||||||........+ +...++++|+.|+.++++++. +.+ .+||++||.+.|...
T Consensus 391 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----------- 459 (582)
T PRK05855 391 GVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPS----------- 459 (582)
T ss_pred CCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC-----------
Confidence 35899999999865433222 345678899999999888753 333 389999998876421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCCCeEEecCCCee
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
.....|+.||++.+.+++.++.+ .|+++++|+||.|-.+-..... ....... ...........+.
T Consensus 460 -----~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----- 528 (582)
T PRK05855 460 -----RSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAED-EARRRGRADKLYQ----- 528 (582)
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccch-hhhHHhhhhhhcc-----
Confidence 12378999999999999998765 4899999999988765321100 0000000 0000000000000
Q ss_pred EccccHHHHHHHHHHHHcCCCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~~ 345 (447)
...+..+|+|++++.++.++..
T Consensus 529 ~~~~~p~~va~~~~~~~~~~~~ 550 (582)
T PRK05855 529 RRGYGPEKVAKAIVDAVKRNKA 550 (582)
T ss_pred ccCCCHHHHHHHHHHHHHcCCC
Confidence 1124679999999999987654
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-15 Score=140.85 Aligned_cols=206 Identities=14% Similarity=0.063 Sum_probs=137.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc--------ccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI--------LLEV 180 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~--------~~~~ 180 (447)
.+++|+++||||+|+||+++++.|+++|++|++++|+..... .....+ ...++.++.+|+.+.. ...+
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALE-ALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 357899999999999999999999999999999998643222 111111 1235778888987653 3469
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCC-CeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVG-ARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g-~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
|++|||||......... +....+++|+.++..+++++ ++.+ .++|++||.... .+
T Consensus 83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~----------------~~ 146 (259)
T PRK06125 83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGE----------------NP 146 (259)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcccc----------------CC
Confidence 99999999754322222 24557899999998888875 3333 389999886421 12
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC-C---C-ch-HHHHHHHHHhCCCeEEecCCCe
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID-D---G-RV-VSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~-~---~-~~-~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
......|+.+|.+.+.+++.++.+ .|++++.|+||.+..|..... . . .+ ........... . .
T Consensus 147 ~~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~ 217 (259)
T PRK06125 147 DADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAG--L-------P 217 (259)
T ss_pred CCCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhcc--C-------C
Confidence 222367999999999999998764 489999999988876531000 0 0 00 00000011110 0 1
Q ss_pred eEccccHHHHHHHHHHHHcCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~ 343 (447)
...+..++|+|+++++++.+.
T Consensus 218 ~~~~~~~~~va~~~~~l~~~~ 238 (259)
T PRK06125 218 LGRPATPEEVADLVAFLASPR 238 (259)
T ss_pred cCCCcCHHHHHHHHHHHcCch
Confidence 123578899999999998754
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=140.86 Aligned_cols=203 Identities=12% Similarity=0.083 Sum_probs=135.2
Q ss_pred CCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEecCCC-CCccccccccCCCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGG--AGFVGSHLVDRLMDRGDSVIVVDNYFT-GKKDNLIHHFGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGa--sG~IG~~l~~~L~~~G~~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~D~~~~~------------~ 177 (447)
+++|+++|||| +++||.+++++|+++|++|++++|+.. ...+.+..... ..+.++.+|+.+.. +
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 83 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-EPAPVLELDVTNEEHLASLADRVREHV 83 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-CCCcEEeCCCCCHHHHHHHHHHHHHHc
Confidence 56789999999 899999999999999999999987531 11122222222 25678889987763 2
Q ss_pred cCCCEEEEeccCCCCC----Cc-cc---ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcC
Q 013226 178 LEVDQIYHLACPASPV----HY-KF---NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~----~~-~~---~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
.++|++|||||..... .. +. ...+.+++|+.++..+++++... +.++|++|+....+
T Consensus 84 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~~------------ 151 (256)
T PRK07889 84 DGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATVA------------ 151 (256)
T ss_pred CCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeeccccc------------
Confidence 4599999999975321 11 11 23457899999998888876542 23888888643211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.||++.+.+++.++.+ .|+++++|.||.+..+....... ............++ .
T Consensus 152 -----~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~--------~ 216 (256)
T PRK07889 152 -----WPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPG--FELLEEGWDERAPL--------G 216 (256)
T ss_pred -----CCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccC--cHHHHHHHHhcCcc--------c
Confidence 112367999999999999999875 48999999999987653211000 01111111111111 0
Q ss_pred EccccHHHHHHHHHHHHcCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~ 343 (447)
+.+...+|+|+++++++.+.
T Consensus 217 ~~~~~p~evA~~v~~l~s~~ 236 (256)
T PRK07889 217 WDVKDPTPVARAVVALLSDW 236 (256)
T ss_pred cccCCHHHHHHHHHHHhCcc
Confidence 13578899999999999864
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-15 Score=142.15 Aligned_cols=202 Identities=14% Similarity=0.099 Sum_probs=132.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc--ccCCCceEEEeccccccc------------ccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH--HFGNPRFELIRHDVVEPI------------LLEVD 181 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~------------~~~~d 181 (447)
|+++||||+|+||.+++++|+++|++|++++|+.+...+.... ......+.++.+|+.++. ..++|
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 4799999999999999999999999999998864322111110 011223455677876542 23589
Q ss_pred EEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----C--CCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 182 QIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----V--GARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~--g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
+||||||......... +....+++|+.++.++++++.. . +.+||++||...+. +
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~----------------~ 144 (272)
T PRK07832 81 VVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV----------------A 144 (272)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC----------------C
Confidence 9999999753322221 2456899999999999998642 2 23899999975321 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCC---chHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDG---RVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.+|++.+.+.+.++.+ .++++++++||.+.+|....... ............. ....
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 214 (272)
T PRK07832 145 LPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVDR----------FRGH 214 (272)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHHh----------cccC
Confidence 112367999999999988887643 58999999999999875321000 0000000000000 0123
Q ss_pred cccHHHHHHHHHHHHcCC
Q 013226 326 FQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~ 343 (447)
.+..+|+|++++.+++++
T Consensus 215 ~~~~~~vA~~~~~~~~~~ 232 (272)
T PRK07832 215 AVTPEKAAEKILAGVEKN 232 (272)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 578999999999999643
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=141.17 Aligned_cols=204 Identities=13% Similarity=0.015 Sum_probs=134.3
Q ss_pred cCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCC-CceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN-PRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~------------ 176 (447)
.+++|+++||||++ +||.++++.|+++|++|++.+|+. ...+.+...... ....++.+|+.++.
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHH
Confidence 35789999999997 899999999999999999988752 111111111111 11235678887762
Q ss_pred ccCCCEEEEeccCCCCC----Cc-c---cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCc
Q 013226 177 LLEVDQIYHLACPASPV----HY-K---FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~----~~-~---~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+..+|++|||||..... .. + .+....+++|+.++..+++++... +.++|++||.....
T Consensus 84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~----------- 152 (260)
T PRK06603 84 WGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK----------- 152 (260)
T ss_pred cCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc-----------
Confidence 24599999999964321 11 1 124568899999999988876432 23899999965321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.||++.+.+++.++.+ .|+++.+|.||.+-.+..... ... ...........++
T Consensus 153 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~~-~~~~~~~~~~~p~-------- 217 (260)
T PRK06603 153 -----VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAI-GDF-STMLKSHAATAPL-------- 217 (260)
T ss_pred -----CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcC-CCc-HHHHHHHHhcCCc--------
Confidence 1112367999999999999999875 479999999999876531100 000 1111112111111
Q ss_pred eEccccHHHHHHHHHHHHcCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.-+...+|+|+++++++...
T Consensus 218 -~r~~~pedva~~~~~L~s~~ 237 (260)
T PRK06603 218 -KRNTTQEDVGGAAVYLFSEL 237 (260)
T ss_pred -CCCCCHHHHHHHHHHHhCcc
Confidence 12567899999999999754
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-15 Score=133.78 Aligned_cols=179 Identities=18% Similarity=0.217 Sum_probs=127.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~Vih~A 187 (447)
|+++||||+|+||++++++|+++ ++|++++|+.. .+.+|+.++. +.++|+|||||
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~id~lv~~a 63 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG----------------DVQVDITDPASIRALFEKVGKVDAVVSAA 63 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC----------------ceEecCCChHHHHHHHHhcCCCCEEEECC
Confidence 57999999999999999999999 99999988532 2344554432 24699999999
Q ss_pred cCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHH
Q 013226 188 CPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDE 260 (447)
Q Consensus 188 g~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~ 260 (447)
|......... +..+.+++|+.++.++++++.+. +.+|+++||.... .+......|+.
T Consensus 64 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~----------------~~~~~~~~Y~~ 127 (199)
T PRK07578 64 GKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSD----------------EPIPGGASAAT 127 (199)
T ss_pred CCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccC----------------CCCCCchHHHH
Confidence 9754332221 24557899999999999987653 2389999986532 12222378999
Q ss_pred HHHHHHHHHHHHHhh--hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHH
Q 013226 261 GKRTAETLTMDYHRG--LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338 (447)
Q Consensus 261 sK~~~E~~~~~~~~~--~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~ 338 (447)
+|+..+.+++.++.+ .++++..|+||.+-.+. ..+ +..++ . ..++..+|+|++++.
T Consensus 128 sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~---------~~~------~~~~~---~----~~~~~~~~~a~~~~~ 185 (199)
T PRK07578 128 VNGALEGFVKAAALELPRGIRINVVSPTVLTESL---------EKY------GPFFP---G----FEPVPAARVALAYVR 185 (199)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEcCCcccCch---------hhh------hhcCC---C----CCCCCHHHHHHHHHH
Confidence 999999999998875 48999999998775431 000 00011 1 236899999999999
Q ss_pred HHcCCCCC-cEE
Q 013226 339 LMEGDHVG-PFN 349 (447)
Q Consensus 339 ~l~~~~~g-~~~ 349 (447)
++++...| +|+
T Consensus 186 ~~~~~~~g~~~~ 197 (199)
T PRK07578 186 SVEGAQTGEVYK 197 (199)
T ss_pred HhccceeeEEec
Confidence 99876544 444
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=136.50 Aligned_cols=200 Identities=17% Similarity=0.121 Sum_probs=134.4
Q ss_pred cCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCCCCC-------cc---cccccc--CCCceEEEeccccccc-
Q 013226 112 QRKSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYFTGK-------KD---NLIHHF--GNPRFELIRHDVVEPI- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~~~~-------~~---~~~~~~--~~~~v~~~~~D~~~~~- 176 (447)
.+++|+++||||+| +||.+++++|+++|++|++++|....+ .+ ...... ...++.++.+|+.+..
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 46789999999995 899999999999999999886432111 00 111111 1235778889987652
Q ss_pred -----------ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCC-CeEEEEeCccccCCC
Q 013226 177 -----------LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVG-ARFLLTSTSEVYGDP 236 (447)
Q Consensus 177 -----------~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g-~r~v~~SS~~v~g~~ 236 (447)
+..+|+||||||......... .....+++|+.++..+.+++ ++.+ .+||++||.....
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-- 160 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG-- 160 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC--
Confidence 234899999999754322222 24457899999988775443 3333 3999999976431
Q ss_pred CCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCC
Q 013226 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP 313 (447)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~ 313 (447)
+......|+.+|++.+.+++.++.+ .+++++.|+||.+-.+... ..+...+....+
T Consensus 161 --------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~-------~~~~~~~~~~~~ 219 (256)
T PRK12859 161 --------------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMT-------EEIKQGLLPMFP 219 (256)
T ss_pred --------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCC-------HHHHHHHHhcCC
Confidence 2223478999999999999998765 5899999999988765321 111111121111
Q ss_pred eEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 314 LTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 314 ~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
...+...+|+|+++++++...
T Consensus 220 ---------~~~~~~~~d~a~~~~~l~s~~ 240 (256)
T PRK12859 220 ---------FGRIGEPKDAARLIKFLASEE 240 (256)
T ss_pred ---------CCCCcCHHHHHHHHHHHhCcc
Confidence 112456899999999998754
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-15 Score=141.70 Aligned_cols=224 Identities=17% Similarity=0.091 Sum_probs=139.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC--CCceEEEeccccccc-----------ccCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG--NPRFELIRHDVVEPI-----------LLEVD 181 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~-----------~~~~d 181 (447)
+|+++|||+ |+||++++++|. +|++|++++|+..... .....+. ..++.++.+|+.+.. +.++|
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLE-AAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 567999997 799999999996 8999999998643221 1111111 235778888987752 24599
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCC-----CCCCCCCcCCCCC---
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPL-----QHPQAETYWGNVN--- 250 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~-----~~~~~e~~~~~~~--- 250 (447)
+||||||... ...+....+++|+.|+.++++++.+. +.++|++||.+...... ........+.+..
T Consensus 79 ~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (275)
T PRK06940 79 GLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLP 155 (275)
T ss_pred EEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccccccc
Confidence 9999999642 22457789999999999999987653 23667777765321110 0001111000000
Q ss_pred ---C---CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 251 ---P---IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 251 ---~---~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
+ ......|+.||++.+.+++.++.+ .|++++.|+||.+..+.....................++
T Consensus 156 ~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~------- 228 (275)
T PRK06940 156 FLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSPA------- 228 (275)
T ss_pred cccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCCc-------
Confidence 0 013468999999999999988765 489999999999987642100000000111122211111
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.-+...+|+|+++++++.... .| .+.+.++
T Consensus 229 --~r~~~peeia~~~~fL~s~~~~~itG~~i~vdgg 262 (275)
T PRK06940 229 --GRPGTPDEIAALAEFLMGPRGSFITGSDFLVDGG 262 (275)
T ss_pred --ccCCCHHHHHHHHHHHcCcccCcccCceEEEcCC
Confidence 126788999999999987542 34 4554433
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=144.56 Aligned_cols=204 Identities=18% Similarity=0.124 Sum_probs=135.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++|+++||||+|+||.+++++|+++|++|++++|+.+.. +.+... ...++..+.+|+.+.. +.++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGL-QELEAA-HGDAVVGVEGDVRSLDDHKEAVARCVAAFGKI 80 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHhh-cCCceEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 4688999999999999999999999999999999864321 112111 1235777888887642 2458
Q ss_pred CEEEEeccCCCCC-Cc---c-----cChHHHHHHHHHHHHHHHHHHHHC----CCeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 181 DQIYHLACPASPV-HY---K-----FNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 181 d~Vih~Ag~~~~~-~~---~-----~~~~~~~~~Nv~gt~~ll~aa~~~----g~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
|++|||||..... .. . ....+.+++|+.++..+++++.+. +.++|++||...+.
T Consensus 81 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~------------- 147 (262)
T TIGR03325 81 DCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY------------- 147 (262)
T ss_pred CEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec-------------
Confidence 9999999964211 11 1 124568899999999999987542 23788888875331
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCC----CchHHHH-HHHHHhCCCeEEecCC
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDD----GRVVSNF-VAQALRKEPLTVYGDG 320 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~ 320 (447)
+......|+.+|++.+.+++.++.++ .+++..|.||.+..+-..... ......+ .....+. ..+
T Consensus 148 ---~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p----- 218 (262)
T TIGR03325 148 ---PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKS-VLP----- 218 (262)
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhh-cCC-----
Confidence 11122679999999999999998775 389999999999876421100 0000000 0111111 011
Q ss_pred CeeEccccHHHHHHHHHHHHcC
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
..-+...+|+|+++++++.+
T Consensus 219 --~~r~~~p~eva~~~~~l~s~ 238 (262)
T TIGR03325 219 --IGRMPDAEEYTGAYVFFATR 238 (262)
T ss_pred --CCCCCChHHhhhheeeeecC
Confidence 12356789999999998875
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-15 Score=140.40 Aligned_cols=203 Identities=10% Similarity=-0.035 Sum_probs=133.0
Q ss_pred CCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGG--AGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGa--sG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~ 177 (447)
+++|+++|||| +++||+++++.|+++|++|++.+|.. ...+.+.+.. .......+.+|+.+.. +
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHW 82 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHh
Confidence 57899999997 67999999999999999999887642 1111111111 1123346788987752 2
Q ss_pred cCCCEEEEeccCCCCC----C-ccc----ChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCC
Q 013226 178 LEVDQIYHLACPASPV----H-YKF----NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~----~-~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
.++|++|||||+.... . .+. .....+++|+.++..+.+++.. .+.++|++||...+.
T Consensus 83 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~---------- 152 (261)
T PRK08690 83 DGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR---------- 152 (261)
T ss_pred CCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc----------
Confidence 4599999999976431 1 111 1334678999998887776533 223899999876431
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
+......|+.+|++.+.+++.++.+ +|+++..|.||.+-.+...... . ............+
T Consensus 153 ------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~-~-~~~~~~~~~~~~p-------- 216 (261)
T PRK08690 153 ------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIA-D-FGKLLGHVAAHNP-------- 216 (261)
T ss_pred ------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCC-c-hHHHHHHHhhcCC--------
Confidence 1112367999999999999998754 5899999999998765311000 0 0111111211111
Q ss_pred eeEccccHHHHHHHHHHHHcCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
...+...+|+|+++++++...
T Consensus 217 -~~r~~~peevA~~v~~l~s~~ 237 (261)
T PRK08690 217 -LRRNVTIEEVGNTAAFLLSDL 237 (261)
T ss_pred -CCCCCCHHHHHHHHHHHhCcc
Confidence 123677899999999999864
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-15 Score=143.29 Aligned_cols=226 Identities=13% Similarity=0.096 Sum_probs=139.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
++++++||||+++||.++++.|+++| ++|++++|+..... +....+ ....+.++.+|+.+.. ..
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 80 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAE-QAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGR 80 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999 99999998643221 111111 1235777888986652 23
Q ss_pred CCCEEEEeccCCCCCC-----cccChHHHHHHHHHHHHHHHHHH----HHCC---CeEEEEeCccccCCCCC----CCCC
Q 013226 179 EVDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLA----KRVG---ARFLLTSTSEVYGDPLQ----HPQA 242 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~aa----~~~g---~r~v~~SS~~v~g~~~~----~~~~ 242 (447)
++|++|||||+..+.. ........+++|+.|+..+++++ ++.+ .+||++||...+..... .+.+
T Consensus 81 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~ 160 (314)
T TIGR01289 81 PLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKAN 160 (314)
T ss_pred CCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCccc
Confidence 5999999999753221 11224567899999987776654 3332 49999999876532110 0111
Q ss_pred CCc-------C------CCCCCCCCCChHHHHHHHHHHHHHHHHhh----hCCcEEEEeeccccCCCCccCCCchHHHHH
Q 013226 243 ETY-------W------GNVNPIGVRSCYDEGKRTAETLTMDYHRG----LGIEARIARIFNTYGPRMCIDDGRVVSNFV 305 (447)
Q Consensus 243 e~~-------~------~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~ 305 (447)
..+ + ....+..+...|+.||++...+.++++++ .++.++.++||.|.......+.......+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~~~ 240 (314)
T TIGR01289 161 LGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRTLF 240 (314)
T ss_pred ccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHHHH
Confidence 000 0 00123345578999999999988888764 379999999999864322111111111111
Q ss_pred HHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCCcEEe
Q 013226 306 AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVGPFNL 350 (447)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g~~~i 350 (447)
..... .. ...+..+++.|+.++.++... ..|.|.-
T Consensus 241 ~~~~~---~~-------~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~ 278 (314)
T TIGR01289 241 PPFQK---YI-------TKGYVSEEEAGERLAQVVSDPKLKKSGVYWS 278 (314)
T ss_pred HHHHH---HH-------hccccchhhhhhhhHHhhcCcccCCCceeee
Confidence 11110 00 012567889999888877653 2355543
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.8e-15 Score=139.14 Aligned_cols=203 Identities=14% Similarity=0.023 Sum_probs=133.9
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~ 177 (447)
+++|+++||||++ +||+++++.|+++|++|++.+|+. ...+...+.. .......+.+|+.+.. +
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 5789999999986 999999999999999999888752 1111111110 1123567888987752 2
Q ss_pred cCCCEEEEeccCCCCCC-----cc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCc
Q 013226 178 LEVDQIYHLACPASPVH-----YK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~-----~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
..+|++|||||...... .. +.....+++|+.++..+.+++... +.++|++||.+..
T Consensus 83 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~------------ 150 (262)
T PRK07984 83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------------ 150 (262)
T ss_pred CCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCC------------
Confidence 35899999999743211 11 123457899999988888876432 2389999987532
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
.+......|+.||++.+.+++.++.+ .|+++.+|.||.+..+... .... ............++
T Consensus 151 ----~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~-~~~~-~~~~~~~~~~~~p~-------- 216 (262)
T PRK07984 151 ----RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAAS-GIKD-FRKMLAHCEAVTPI-------- 216 (262)
T ss_pred ----CCCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHh-cCCc-hHHHHHHHHHcCCC--------
Confidence 11122367999999999999999875 4899999999988764211 0001 01111111111111
Q ss_pred eEccccHHHHHHHHHHHHcCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.-+...+|++.++++++...
T Consensus 217 -~r~~~pedva~~~~~L~s~~ 236 (262)
T PRK07984 217 -RRTVTIEDVGNSAAFLCSDL 236 (262)
T ss_pred -cCCCCHHHHHHHHHHHcCcc
Confidence 23578899999999999764
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-15 Score=140.11 Aligned_cols=202 Identities=12% Similarity=0.015 Sum_probs=134.3
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCC--CCccccccccCCCceEEEeccccccc------------
Q 013226 113 RKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFT--GKKDNLIHHFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 113 ~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~--~~~~~~~~~~~~~~v~~~~~D~~~~~------------ 176 (447)
+++|+++||||+ ++||.++++.|+++|++|++++|+.. ...+.+.... .....+.+|+.+..
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL--GAFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc--CCceEEecCCCCHHHHHHHHHHHHHh
Confidence 467899999997 89999999999999999998877421 1111111111 12456788987652
Q ss_pred ccCCCEEEEeccCCCC----CCc-c---cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCc
Q 013226 177 LLEVDQIYHLACPASP----VHY-K---FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~----~~~-~---~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+..+|++|||||.... ... + +.....+++|+.++..+++++... +.++|++||.....
T Consensus 86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~----------- 154 (272)
T PRK08159 86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK----------- 154 (272)
T ss_pred cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc-----------
Confidence 2458999999997532 111 1 124568899999999999887653 23899999865321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.+|++.+.+++.++.++ ++++.+|.||.+..+..... ..+ .. ....... ..+
T Consensus 155 -----~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~~~-~~-~~~~~~~-~~p------- 218 (272)
T PRK08159 155 -----VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGI-GDF-RY-ILKWNEY-NAP------- 218 (272)
T ss_pred -----CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcC-Ccc-hH-HHHHHHh-CCc-------
Confidence 11123679999999999999998764 89999999998876421100 000 00 1111110 111
Q ss_pred eEccccHHHHHHHHHHHHcCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~ 343 (447)
..-+...+|+|+++++++...
T Consensus 219 ~~r~~~peevA~~~~~L~s~~ 239 (272)
T PRK08159 219 LRRTVTIEEVGDSALYLLSDL 239 (272)
T ss_pred ccccCCHHHHHHHHHHHhCcc
Confidence 112567899999999999754
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.5e-15 Score=138.09 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=122.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEe
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHL 186 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 186 (447)
.+++++++||||+|+||++++++|+++|++|++++|+.....+.. ... ....+..|+.+. .+.++|++|||
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~---~~~-~~~~~~~D~~~~~~~~~~~~~iDilVnn 86 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESN---DES-PNEWIKWECGKEESLDKQLASLDVLILN 86 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhh---ccC-CCeEEEeeCCCHHHHHHhcCCCCEEEEC
Confidence 457899999999999999999999999999999998642211111 111 124566777654 34579999999
Q ss_pred ccCCCCCCc-ccChHHHHHHHHHHHHHHHHHHHHC--------CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCCh
Q 013226 187 ACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRV--------GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSC 257 (447)
Q Consensus 187 Ag~~~~~~~-~~~~~~~~~~Nv~gt~~ll~aa~~~--------g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~ 257 (447)
||....... .++..+.+++|+.|+.++++++... +..++..||.+... +. ....
T Consensus 87 AG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~----------------~~-~~~~ 149 (245)
T PRK12367 87 HGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ----------------PA-LSPS 149 (245)
T ss_pred CccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC----------------CC-CCch
Confidence 997433222 2345678999999999999886432 22344445543221 11 1256
Q ss_pred HHHHHHHHHHHHHHHHh-------hhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 258 YDEGKRTAETLTMDYHR-------GLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~-------~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
|+.||++.+.+. .+++ ..++.+..+.||.+..+- . . ...+..+
T Consensus 150 Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~~t~~-------------------~------~----~~~~~~~ 199 (245)
T PRK12367 150 YEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPFRSEL-------------------N------P----IGIMSAD 199 (245)
T ss_pred hHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCccccc-------------------C------c----cCCCCHH
Confidence 999999976543 3332 247778888876543210 0 0 0146789
Q ss_pred HHHHHHHHHHcCCCCCcEE
Q 013226 331 DLVEGLIRLMEGDHVGPFN 349 (447)
Q Consensus 331 D~a~ai~~~l~~~~~g~~~ 349 (447)
|+|+.++.+++++...++.
T Consensus 200 ~vA~~i~~~~~~~~~~~~~ 218 (245)
T PRK12367 200 FVAKQILDQANLGLYLIIV 218 (245)
T ss_pred HHHHHHHHHHhcCCceEEE
Confidence 9999999999877654443
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-15 Score=139.64 Aligned_cols=204 Identities=12% Similarity=0.042 Sum_probs=135.2
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCC-CccccccccC--CCceEEEeccccccc-----------
Q 013226 113 RKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTG-KKDNLIHHFG--NPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 113 ~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~-~~~~~~~~~~--~~~v~~~~~D~~~~~----------- 176 (447)
+++|+++||||+ ++||++++++|+++|++|++.+|+.+. +.++....+. ...+.++.+|+.++.
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence 578999999986 899999999999999999888764331 1111111111 123567888887753
Q ss_pred -ccCCCEEEEeccCCCC----CCcc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCC
Q 013226 177 -LLEVDQIYHLACPASP----VHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~----~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+.++|++|||||.... .... +.....+++|+.++..+++++... +.+||++||....
T Consensus 84 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~----------- 152 (258)
T PRK07370 84 KWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGV----------- 152 (258)
T ss_pred HcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccc-----------
Confidence 2459999999997532 1111 124568899999998888876432 3489999997532
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
.+......|+.+|++.+.+++.++.++ |+++++|.||.+-.+-.... ... ...........+
T Consensus 153 -----~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~-~~~-~~~~~~~~~~~p-------- 217 (258)
T PRK07370 153 -----RAIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAV-GGI-LDMIHHVEEKAP-------- 217 (258)
T ss_pred -----cCCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhcc-ccc-hhhhhhhhhcCC--------
Confidence 111223679999999999999998764 79999999999876531100 000 111111111111
Q ss_pred eeEccccHHHHHHHHHHHHcCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
..-+...+|++.++.+++.+.
T Consensus 218 -~~r~~~~~dva~~~~fl~s~~ 238 (258)
T PRK07370 218 -LRRTVTQTEVGNTAAFLLSDL 238 (258)
T ss_pred -cCcCCCHHHHHHHHHHHhChh
Confidence 113567899999999999754
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=137.18 Aligned_cols=201 Identities=13% Similarity=-0.031 Sum_probs=133.1
Q ss_pred CCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEecCCCCCcccc---ccccCCCceEEEeccccccc-----------
Q 013226 113 RKSLRILVTGG--AGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL---IHHFGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 113 ~~~~~ilVtGa--sG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~---~~~~~~~~v~~~~~D~~~~~----------- 176 (447)
+++|+++|||| +++||.+++++|+++|++|++++|... ..+.+ ..... ....+.+|+.++.
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFG--SDLVFPCDVASDEQIDALFASLGQ 80 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHhcC--CcceeeccCCCHHHHHHHHHHHHH
Confidence 57889999996 689999999999999999998865311 11111 11111 2235778887653
Q ss_pred -ccCCCEEEEeccCCCCC----C-cc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCC
Q 013226 177 -LLEVDQIYHLACPASPV----H-YK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~----~-~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e 243 (447)
+.++|++|||||..... . .+ ++....+++|+.++..+++++... +.++|++||....
T Consensus 81 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~---------- 150 (260)
T PRK06997 81 HWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE---------- 150 (260)
T ss_pred HhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccc----------
Confidence 24599999999975321 1 11 124457899999999988887553 2389999987532
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
.+......|+.+|++.+.+++.++.+ .|++++.|.||.+-.+-.... .. ........... .+
T Consensus 151 ------~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~-~~-~~~~~~~~~~~--~p----- 215 (260)
T PRK06997 151 ------RVVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGI-KD-FGKILDFVESN--AP----- 215 (260)
T ss_pred ------cCCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccc-cc-hhhHHHHHHhc--Cc-----
Confidence 11112367999999999999999875 489999999998876421100 00 01111111111 11
Q ss_pred CeeEccccHHHHHHHHHHHHcCC
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
..-+..++|+++++.+++..+
T Consensus 216 --~~r~~~pedva~~~~~l~s~~ 236 (260)
T PRK06997 216 --LRRNVTIEEVGNVAAFLLSDL 236 (260)
T ss_pred --ccccCCHHHHHHHHHHHhCcc
Confidence 112567899999999999864
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-15 Score=158.80 Aligned_cols=194 Identities=13% Similarity=0.099 Sum_probs=140.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+... ++.... ...++.++.+|+.+.. +
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALD-ELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999999999998643221 111111 1236788899987753 2
Q ss_pred cCCCEEEEeccCCCCCCcc------cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 178 LEVDQIYHLACPASPVHYK------FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~------~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
.++|+||||||........ ++....+++|+.|+.++++++ ++.+. +||++||.+.+...
T Consensus 447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 516 (657)
T PRK07201 447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNA---------- 516 (657)
T ss_pred CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC----------
Confidence 3599999999975322111 235568999999998887765 34454 99999998876421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
.....|+.+|++.+.+++.++.+ .++++++|+||.|..+..... ..+..
T Consensus 517 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~------------------~~~~~---- 568 (657)
T PRK07201 517 ------PRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPT------------------KRYNN---- 568 (657)
T ss_pred ------CCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcc------------------ccccC----
Confidence 12367999999999999998765 489999999999987642110 00001
Q ss_pred EccccHHHHHHHHHHHHcCCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~ 344 (447)
...+..+++|+.++..+.+..
T Consensus 569 ~~~~~~~~~a~~i~~~~~~~~ 589 (657)
T PRK07201 569 VPTISPEEAADMVVRAIVEKP 589 (657)
T ss_pred CCCCCHHHHHHHHHHHHHhCC
Confidence 125789999999999886543
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=140.77 Aligned_cols=157 Identities=16% Similarity=0.130 Sum_probs=114.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc---------c-------c
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI---------L-------L 178 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---------~-------~ 178 (447)
+|+++||||+|+||++++++|+++|++|++++|+.... .... ...++.++.+|+.+.. + .
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~---~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 76 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS---LAAA-AGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGA 76 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh---hhhc-cCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCC
Confidence 36899999999999999999999999999999864321 1111 1236778888886652 1 1
Q ss_pred CCCEEEEeccCCCCC-Ccc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPV-HYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~-~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.+|++|||||..... ... +.....+++|+.++..+++.+. +.+. +||++||...+.
T Consensus 77 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------------- 142 (243)
T PRK07023 77 SRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN-------------- 142 (243)
T ss_pred CceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC--------------
Confidence 478999999975431 111 1245678999999776665554 3333 999999987542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh--hCCcEEEEeeccccCC
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG--LGIEARIARIFNTYGP 291 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~~i~~~ivRp~~i~Gp 291 (447)
+..+...|+.+|...|.+++.++.+ .++++.+|+||.+-.+
T Consensus 143 --~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 143 --AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 2223478999999999999988754 5899999999887554
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=136.72 Aligned_cols=200 Identities=13% Similarity=0.115 Sum_probs=129.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc------------c--CC-
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL------------L--EV- 180 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------------~--~~- 180 (447)
|+++||||+|+||++++++|+++|++|++++|......+.+... ...++.++.+|+.+... . +.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQ-YNSNLTFHSLDLQDVHELETNFNEILSSIQEDNVS 80 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhc-cCCceEEEEecCCCHHHHHHHHHHHHHhcCcccCC
Confidence 68999999999999999999999999999998642221211111 12367788899876521 1 11
Q ss_pred -CEEEEeccCCCCC-Cccc----ChHHHHHHHHHHHHHHHHHH----HHCC--CeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 181 -DQIYHLACPASPV-HYKF----NPVKTIKTNVVGTLNMLGLA----KRVG--ARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 181 -d~Vih~Ag~~~~~-~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+++|||||...+. .+.. ...+.+++|+.++..+++.+ ++.+ .+||++||...+
T Consensus 81 ~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~--------------- 145 (251)
T PRK06924 81 SIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAK--------------- 145 (251)
T ss_pred ceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhc---------------
Confidence 2799999975331 1221 24457888999876666554 3332 389999997643
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh-----hCCcEEEEeeccccCCCCcc---CCCchHHHHHHHHHhCCCeEEecCC
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG-----LGIEARIARIFNTYGPRMCI---DDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~i~~~ivRp~~i~Gp~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
.+..+...|+.+|++.+.+++.++.+ .++++..|+||.+-.+.... ...... ..+....... ..
T Consensus 146 -~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~-~~~~~~~~~~-----~~- 217 (251)
T PRK06924 146 -NPYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDF-TNLDRFITLK-----EE- 217 (251)
T ss_pred -CCCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccc-hHHHHHHHHh-----hc-
Confidence 22333478999999999999998765 37999999999876543110 000000 0011111100 01
Q ss_pred CeeEccccHHHHHHHHHHHHcC
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
.-+..++|+|+.++.++.+
T Consensus 218 ---~~~~~~~dva~~~~~l~~~ 236 (251)
T PRK06924 218 ---GKLLSPEYVAKALRNLLET 236 (251)
T ss_pred ---CCcCCHHHHHHHHHHHHhc
Confidence 1257889999999999986
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=134.28 Aligned_cols=179 Identities=15% Similarity=0.147 Sum_probs=127.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc---------cCCCEEEEe
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL---------LEVDQIYHL 186 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---------~~~d~Vih~ 186 (447)
|+++||||+|+||+++++.|+++|++|++++|+.+... .... ...+.++.+|+.++.. ..+|++|||
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~-~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ 76 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLE-VAAK---ELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNV 76 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH---hccCcEEecCCCCHHHHHHHHHHHhhcCcEEEEC
Confidence 47999999999999999999999999999998643211 1111 1135677888876531 258999999
Q ss_pred ccCCCC----C--Cc---ccChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 187 ACPASP----V--HY---KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 187 Ag~~~~----~--~~---~~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
||.... . .. ..+..+.+++|+.++.++++++... +.++|++||... + .
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~------------------~--~ 136 (223)
T PRK05884 77 PAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP------------------P--A 136 (223)
T ss_pred CCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC------------------C--C
Confidence 985211 1 11 1235568999999999999987542 248999998641 0 1
Q ss_pred CChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHH
Q 013226 255 RSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 331 (447)
...|+.+|++.+.+++.++.+ .|+++..|.||.+..+.. .. ... . .....+|
T Consensus 137 ~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~------------~~-~~~--~----------p~~~~~~ 191 (223)
T PRK05884 137 GSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGY------------DG-LSR--T----------PPPVAAE 191 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhh------------hh-ccC--C----------CCCCHHH
Confidence 267999999999999999875 489999999998865421 00 000 0 1126799
Q ss_pred HHHHHHHHHcCC
Q 013226 332 LVEGLIRLMEGD 343 (447)
Q Consensus 332 ~a~ai~~~l~~~ 343 (447)
+++++.+++...
T Consensus 192 ia~~~~~l~s~~ 203 (223)
T PRK05884 192 IARLALFLTTPA 203 (223)
T ss_pred HHHHHHHHcCch
Confidence 999999998754
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-14 Score=145.13 Aligned_cols=201 Identities=16% Similarity=0.086 Sum_probs=134.5
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
..+++++++||||+|+||..++++|+++|++|+++++... .+.+..........++.+|+++.. ..
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~--~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 283 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA--GEALAAVANRVGGTALALDITAPDAPARIAEHLAERHG 283 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc--HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCC
Confidence 4467899999999999999999999999999999987421 111111111113456777876652 13
Q ss_pred CCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHCC-----CeEEEEeCcccc-CCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRVG-----ARFLLTSTSEVY-GDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~g-----~r~v~~SS~~v~-g~~~~~~~~e~~~~~ 248 (447)
++|+||||||........ ......+++|+.++.++.+++.... .+||++||...+ +.+
T Consensus 284 ~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~------------ 351 (450)
T PRK08261 284 GLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNR------------ 351 (450)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCC------------
Confidence 589999999976543222 2245688999999999999986632 389999997643 321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
....|+.+|+..+.+++.++.+ .+++++++.||.+-.+-.. . ++.......+. +. ....
T Consensus 352 -----~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~----~-~~~~~~~~~~~--~~------~l~~ 413 (450)
T PRK08261 352 -----GQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTA----A-IPFATREAGRR--MN------SLQQ 413 (450)
T ss_pred -----CChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhh----c-cchhHHHHHhh--cC------CcCC
Confidence 1268999999999999888754 4899999999987543210 0 01111111111 00 0112
Q ss_pred cccHHHHHHHHHHHHcCC
Q 013226 326 FQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~ 343 (447)
.-..+|+++++++++...
T Consensus 414 ~~~p~dva~~~~~l~s~~ 431 (450)
T PRK08261 414 GGLPVDVAETIAWLASPA 431 (450)
T ss_pred CCCHHHHHHHHHHHhChh
Confidence 234679999999998754
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=133.32 Aligned_cols=182 Identities=16% Similarity=0.109 Sum_probs=129.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------cc--CCCEEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LL--EVDQIY 184 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~--~~d~Vi 184 (447)
+++++||||+|+||++++++|+++|++|++++|+.... +.+. ...+.++.+|+.+.. +. ++|+||
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~-~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi 75 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAAL-AALQ----ALGAEALALDVADPASVAGLAWKLDGEALDAAV 75 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHH-HHHH----hccceEEEecCCCHHHHHHHHHHhcCCCCCEEE
Confidence 36799999999999999999999999999999864322 1111 123567888886652 12 489999
Q ss_pred EeccCCCCCC------cccChHHHHHHHHHHHHHHHHHHHHC----CCeEEEEeCcc-ccCCCCCCCCCCCcCCCCCCCC
Q 013226 185 HLACPASPVH------YKFNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSE-VYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 185 h~Ag~~~~~~------~~~~~~~~~~~Nv~gt~~ll~aa~~~----g~r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
|+||...... ...+....+++|+.++.++++++.+. +.++|++||.. .++.. +..
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------~~~ 141 (222)
T PRK06953 76 YVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA--------------TGT 141 (222)
T ss_pred ECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc--------------cCC
Confidence 9999753211 12235678999999999999888642 23789998865 44421 111
Q ss_pred CCChHHHHHHHHHHHHHHHHhhh-CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGL-GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 332 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~-~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 332 (447)
+...|+.+|...+.+++.++.+. +++++.++||.+..+... + ...+..++.
T Consensus 142 ~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~------------------------~----~~~~~~~~~ 193 (222)
T PRK06953 142 TGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG------------------------A----QAALDPAQS 193 (222)
T ss_pred CccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC------------------------C----CCCCCHHHH
Confidence 12469999999999999987665 789999999988765310 0 113566888
Q ss_pred HHHHHHHHcCC
Q 013226 333 VEGLIRLMEGD 343 (447)
Q Consensus 333 a~ai~~~l~~~ 343 (447)
+..+..++...
T Consensus 194 ~~~~~~~~~~~ 204 (222)
T PRK06953 194 VAGMRRVIAQA 204 (222)
T ss_pred HHHHHHHHHhc
Confidence 88888877654
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.8e-14 Score=130.28 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=133.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEEEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQIYH 185 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~Vih 185 (447)
|+|+||||+|+||++++++|+++| ..|....|.... . ....++.++.+|+.+.. +.++|+|||
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~--~-----~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~ 73 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKP--D-----FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLIN 73 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcc--c-----cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999999986 456555553221 1 12346778888987653 346999999
Q ss_pred eccCCCCCC------ccc-C---hHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 186 LACPASPVH------YKF-N---PVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 186 ~Ag~~~~~~------~~~-~---~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
|||...... ... + ....+++|+.++..+++++.. .+. +++++||.. +.... .
T Consensus 74 ~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~~~-----------~ 140 (235)
T PRK09009 74 CVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSISD-----------N 140 (235)
T ss_pred CCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--ccccc-----------C
Confidence 999764211 111 1 335789999998888877644 233 899998743 11000 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh-----hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG-----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+..+...|+.+|+..+.+++.++.+ .++++..+.||.+..+... . .... . ....
T Consensus 141 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~--------~----~~~~--~-------~~~~ 199 (235)
T PRK09009 141 RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSK--------P----FQQN--V-------PKGK 199 (235)
T ss_pred CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCc--------c----hhhc--c-------ccCC
Confidence 1122368999999999999998865 3789999999998776421 0 0000 0 1123
Q ss_pred cccHHHHHHHHHHHHcCCC---CCcEEecCCCc
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VGPFNLGNPGE 355 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g~~~i~~~~~ 355 (447)
++..+|+|++++.++.... .|.+....++-
T Consensus 200 ~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~~ 232 (235)
T PRK09009 200 LFTPEYVAQCLLGIIANATPAQSGSFLAYDGET 232 (235)
T ss_pred CCCHHHHHHHHHHHHHcCChhhCCcEEeeCCcC
Confidence 5788999999999998753 45555444443
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-14 Score=133.94 Aligned_cols=215 Identities=22% Similarity=0.215 Sum_probs=153.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 190 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~~ 190 (447)
|+|+||||||++|++++++|+++|++|+++.|+........ ..+++...|+.+. .+.++|.++++.+..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~------~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~ 74 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA------GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL 74 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc------CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence 57999999999999999999999999999999654332221 4677888887666 457899999998743
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHH
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLT 269 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~ 269 (447)
. .. . ...........+..+++. .++ +++++|....-. .....|..+|...|..+
T Consensus 75 ~-~~----~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~~------------------~~~~~~~~~~~~~e~~l 129 (275)
T COG0702 75 D-GS----D-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGADA------------------ASPSALARAKAAVEAAL 129 (275)
T ss_pred c-cc----c-chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCCC------------------CCccHHHHHHHHHHHHH
Confidence 2 11 1 222344444444455444 334 788888865321 12278999999999988
Q ss_pred HHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHH-HHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC--CCC
Q 013226 270 MDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFV-AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD--HVG 346 (447)
Q Consensus 270 ~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~--~~g 346 (447)
.+ .+++.+++|+..+|.... ..++ .....+.+....+. ...+++.++|++.++..++..+ ...
T Consensus 130 ~~----sg~~~t~lr~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--~~~~~i~~~d~a~~~~~~l~~~~~~~~ 195 (275)
T COG0702 130 RS----SGIPYTTLRRAAFYLGAG--------AAFIEAAEAAGLPVIPRGI--GRLSPIAVDDVAEALAAALDAPATAGR 195 (275)
T ss_pred Hh----cCCCeEEEecCeeeeccc--------hhHHHHHHhhCCceecCCC--CceeeeEHHHHHHHHHHHhcCCcccCc
Confidence 76 689999999766654321 1212 22333333333333 3678999999999999999876 335
Q ss_pred cEEecCCCccCHHHHHHHHHHHhCCCCcE
Q 013226 347 PFNLGNPGEFTMLELAEVVQEIIDRNARI 375 (447)
Q Consensus 347 ~~~i~~~~~~s~~el~~~i~~~~g~~~~~ 375 (447)
+|.+++++..+..|+.+.+.+..+++...
T Consensus 196 ~~~l~g~~~~~~~~~~~~l~~~~gr~~~~ 224 (275)
T COG0702 196 TYELAGPEALTLAELASGLDYTIGRPVGL 224 (275)
T ss_pred EEEccCCceecHHHHHHHHHHHhCCccee
Confidence 99999999999999999999999988766
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=127.30 Aligned_cols=273 Identities=15% Similarity=0.093 Sum_probs=176.9
Q ss_pred CCCeEEEEcCCChhHHHHHH-----HHHhCC----CeEEEEecCCCCCccccccccCCCceEEEeccccccccc-CCCEE
Q 013226 114 KSLRILVTGGAGFVGSHLVD-----RLMDRG----DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL-EVDQI 183 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~-----~L~~~G----~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~d~V 183 (447)
++++.++-+++|+|++.|.. ++-+-+ |.|+++.|.+.+.+... -+.|. .-+. .|+..
T Consensus 11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~ritw-----------~el~~--~Gip~sc~a~ 77 (315)
T KOG3019|consen 11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKARITW-----------PELDF--PGIPISCVAG 77 (315)
T ss_pred ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCccccc-----------chhcC--CCCceehHHH
Confidence 55678888999999988876 555555 89999999754432221 11111 1111 35555
Q ss_pred EEeccCC--CC-CCcccC-hHHHHHHHHHHHHHHHHHHHHCCC---eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCC
Q 013226 184 YHLACPA--SP-VHYKFN-PVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRS 256 (447)
Q Consensus 184 ih~Ag~~--~~-~~~~~~-~~~~~~~Nv~gt~~ll~aa~~~g~---r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~ 256 (447)
+|.+|.. .+ ..|... ..++...-+..|..|.++...+.. .+|++|..++|-....+.++|+ .+...++
T Consensus 78 vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~-----~~~qgfd 152 (315)
T KOG3019|consen 78 VNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEK-----IVHQGFD 152 (315)
T ss_pred HhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccc-----cccCChH
Confidence 5555421 11 122222 223444445558888999888763 6999999999987777888888 4554444
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHH--HHhCCCeEEecCCCeeEccccHHHHHH
Q 013226 257 CYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQ--ALRKEPLTVYGDGKQTRSFQFVSDLVE 334 (447)
Q Consensus 257 ~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~v~D~a~ 334 (447)
...+--..-|..+..- ....+++++|.|.|.|.+. ..+..++.. +..|++ .|++.++.+|||++|++.
T Consensus 153 ~~srL~l~WE~aA~~~--~~~~r~~~iR~GvVlG~gG-----Ga~~~M~lpF~~g~GGP---lGsG~Q~fpWIHv~DL~~ 222 (315)
T KOG3019|consen 153 ILSRLCLEWEGAALKA--NKDVRVALIRIGVVLGKGG-----GALAMMILPFQMGAGGP---LGSGQQWFPWIHVDDLVN 222 (315)
T ss_pred HHHHHHHHHHHHhhcc--CcceeEEEEEEeEEEecCC-----cchhhhhhhhhhccCCc---CCCCCeeeeeeehHHHHH
Confidence 4443333334333322 2258999999999999863 223333322 223443 378999999999999999
Q ss_pred HHHHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEe---------cCCCC-CCCCcccCChHHHHHHcCCCc
Q 013226 335 GLIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEF---------RPNTE-DDPHKRKPDITKAKQLLGWEP 403 (447)
Q Consensus 335 ai~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~---------~~~~~-~~~~~~~~d~~k~~~~lG~~p 403 (447)
.+..+++++. .|+.|-+.|++++..|+.+.+..++++++-+.. .|... .-.....+-..|+.. +||+.
T Consensus 223 li~~ale~~~v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA~~vLeGqKV~Pqral~-~Gf~f 301 (315)
T KOG3019|consen 223 LIYEALENPSVKGVINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERATVVLEGQKVLPQRALE-LGFEF 301 (315)
T ss_pred HHHHHHhcCCCCceecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccceeEEeeCCcccchhHhh-cCcee
Confidence 9999999964 689999999999999999999999998765421 11100 011122334555554 89999
Q ss_pred cCC-HHHHHHHHH
Q 013226 404 RVT-LRKGLPLMV 415 (447)
Q Consensus 404 ~~s-~~e~l~~~~ 415 (447)
+|+ +.++++++.
T Consensus 302 ~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 302 KYPYVKDALRAIM 314 (315)
T ss_pred echHHHHHHHHHh
Confidence 984 677877654
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-14 Score=139.02 Aligned_cols=186 Identities=17% Similarity=0.136 Sum_probs=123.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----ccCCCEEEEe
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LLEVDQIYHL 186 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~~~d~Vih~ 186 (447)
++++|+++||||+|+||++++++|+++|++|++++|+.+...+.... ....+..+..|+.+.. +.++|++|||
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~--~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInn 252 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEING--EDLPVKTLHWQVGQEAALAELLEKVDILIIN 252 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCeEEEEeeCCCHHHHHHHhCCCCEEEEC
Confidence 46789999999999999999999999999999999864322111110 1123566777876653 4679999999
Q ss_pred ccCCCCCCc-ccChHHHHHHHHHHHHHHHHHHHH----CC----C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCC
Q 013226 187 ACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKR----VG----A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRS 256 (447)
Q Consensus 187 Ag~~~~~~~-~~~~~~~~~~Nv~gt~~ll~aa~~----~g----~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~ 256 (447)
||....... .++..+.+++|+.|+.++++++.+ .+ . .+|++|+... .+ ....
T Consensus 253 AGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-----------------~~-~~~~ 314 (406)
T PRK07424 253 HGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-----------------NP-AFSP 314 (406)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-----------------cC-CCch
Confidence 997533221 123467899999999999998643 22 1 3455554221 11 1124
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHH
Q 013226 257 CYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 257 ~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai 336 (447)
.|+.||++.+.+..-...+.++.+..+.||.+..+ + .+ ...+..+|+|+.+
T Consensus 315 ~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~--------~-----------~~----------~~~~spe~vA~~i 365 (406)
T PRK07424 315 LYELSKRALGDLVTLRRLDAPCVVRKLILGPFKSN--------L-----------NP----------IGVMSADWVAKQI 365 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCcCC--------C-----------Cc----------CCCCCHHHHHHHH
Confidence 69999999998864333344555666665332110 0 00 1247889999999
Q ss_pred HHHHcCCCCC
Q 013226 337 IRLMEGDHVG 346 (447)
Q Consensus 337 ~~~l~~~~~g 346 (447)
+.+++++...
T Consensus 366 l~~i~~~~~~ 375 (406)
T PRK07424 366 LKLAKRDFRN 375 (406)
T ss_pred HHHHHCCCCE
Confidence 9999887653
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-14 Score=130.83 Aligned_cols=194 Identities=12% Similarity=0.140 Sum_probs=131.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc------------ccCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
|+++||||+++||.+++++|+ +|++|++++|+.+... ++...+ ....+.++.+|+.+.. ..++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~-~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQ-GLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHH-HHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999998 5999999998644322 221111 1224678889987752 2359
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHH----HHHCC--CeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGL----AKRVG--ARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~a----a~~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
|++|||||........+ ...+.+++|+.+...++.+ +.+.+ .+||++||...+-
T Consensus 79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~---------------- 142 (246)
T PRK05599 79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR---------------- 142 (246)
T ss_pred CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc----------------
Confidence 99999999754322111 1334677888887765544 44433 4899999976321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
+......|+.+|++.+.+++.++.+ .+++++.+.||.+..+-.. ...+.+ -..
T Consensus 143 ~~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~---------------~~~~~~---------~~~ 198 (246)
T PRK05599 143 ARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTT---------------GMKPAP---------MSV 198 (246)
T ss_pred CCcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhc---------------CCCCCC---------CCC
Confidence 1112367999999999999998876 4799999999888764210 000000 025
Q ss_pred cHHHHHHHHHHHHcCCCC-CcEEec
Q 013226 328 FVSDLVEGLIRLMEGDHV-GPFNLG 351 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~~-g~~~i~ 351 (447)
..+|+|++++.++.++.. +.+.+.
T Consensus 199 ~pe~~a~~~~~~~~~~~~~~~~~~~ 223 (246)
T PRK05599 199 YPRDVAAAVVSAITSSKRSTTLWIP 223 (246)
T ss_pred CHHHHHHHHHHHHhcCCCCceEEeC
Confidence 789999999999997653 345554
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=137.19 Aligned_cols=200 Identities=13% Similarity=0.021 Sum_probs=129.9
Q ss_pred eEEEEcCCChhHHHHHHHHHh----CCCeEEEEecCCCCCcccccccc----CCCceEEEecccccccc-----------
Q 013226 117 RILVTGGAGFVGSHLVDRLMD----RGDSVIVVDNYFTGKKDNLIHHF----GNPRFELIRHDVVEPIL----------- 177 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~----~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~----------- 177 (447)
.++||||+++||.+++++|++ .|++|++++|+.+...+ +...+ ...++.++.+|+.+...
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~-~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQ-LKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHH-HHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 79999999986443221 11111 12367888899876531
Q ss_pred -c----CCCEEEEeccCCCCC--Ccc-----cChHHHHHHHHHHHHHHHHHHHH----C-C--CeEEEEeCccccCCCCC
Q 013226 178 -L----EVDQIYHLACPASPV--HYK-----FNPVKTIKTNVVGTLNMLGLAKR----V-G--ARFLLTSTSEVYGDPLQ 238 (447)
Q Consensus 178 -~----~~d~Vih~Ag~~~~~--~~~-----~~~~~~~~~Nv~gt~~ll~aa~~----~-g--~r~v~~SS~~v~g~~~~ 238 (447)
. +.|+||||||..... ... ....+.+++|+.++..+++++.+ . + .+||++||...+.
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~---- 156 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ---- 156 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC----
Confidence 0 126999999964321 111 22456899999998877766533 2 2 3899999986431
Q ss_pred CCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC-CCchHHHHHHHHHhCCCe
Q 013226 239 HPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPL 314 (447)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~-~~~~~~~~~~~~~~~~~~ 314 (447)
+......|+.+|++.+.+++.++.+ .++++.+++||.+-.+..... +...-..+...+....+
T Consensus 157 ------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~- 223 (256)
T TIGR01500 157 ------------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELKA- 223 (256)
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHHh-
Confidence 1222368999999999999998766 479999999998865421000 00000000000101000
Q ss_pred EEecCCCeeEccccHHHHHHHHHHHHcC
Q 013226 315 TVYGDGKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 315 ~~~~~~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
...+...+|+|++++.++++
T Consensus 224 --------~~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 224 --------KGKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred --------cCCCCCHHHHHHHHHHHHhc
Confidence 11267889999999999964
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-14 Score=136.02 Aligned_cols=179 Identities=17% Similarity=0.127 Sum_probs=129.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc---cccccccCCCceEEEeccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK---DNLIHHFGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~---~~~~~~~~~~~v~~~~~D~~~~~----------- 176 (447)
....+++++|||||++||.++++.|+++|.+|++.+|+..... +.+........+.+..+|+.+..
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999763322 22233334567888999997653
Q ss_pred -ccCCCEEEEeccCCCCCC--cccChHHHHHHHHHHHHHHHHH----HHHCC-CeEEEEeCccccCC-CCCCCCCCCcCC
Q 013226 177 -LLEVDQIYHLACPASPVH--YKFNPVKTIKTNVVGTLNMLGL----AKRVG-ARFLLTSTSEVYGD-PLQHPQAETYWG 247 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~--~~~~~~~~~~~Nv~gt~~ll~a----a~~~g-~r~v~~SS~~v~g~-~~~~~~~e~~~~ 247 (447)
....|++|||||+..+.. .++..+..+.+|..|+..|.+. ++... .|||++||... +. .....++..
T Consensus 111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~--- 186 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGE--- 186 (314)
T ss_pred cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccch---
Confidence 235899999999976544 2234677899999997666655 45554 59999999764 11 111111111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCC
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRM 293 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~ 293 (447)
..........|+.||.+...+..++++.. |+.+..+.||.+.++..
T Consensus 187 ~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l 234 (314)
T KOG1208|consen 187 KAKLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGL 234 (314)
T ss_pred hccCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccce
Confidence 00112223469999999999999998765 79999999999888743
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-14 Score=131.36 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=113.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------c--cCCCEEEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------L--LEVDQIYH 185 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~--~~~d~Vih 185 (447)
++++||||+|+||++++++|+++|++|++++|+..... .+.. ..++.+..+|+.+.. + .++|+|||
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~ 77 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDT-ALQA---LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFV 77 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchH-HHHh---ccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEE
Confidence 67999999999999999999999999999999754322 2211 124566777876642 1 25899999
Q ss_pred eccCCCCCC--c----ccChHHHHHHHHHHHHHHHHHHHHC---C-CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC
Q 013226 186 LACPASPVH--Y----KFNPVKTIKTNVVGTLNMLGLAKRV---G-ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR 255 (447)
Q Consensus 186 ~Ag~~~~~~--~----~~~~~~~~~~Nv~gt~~ll~aa~~~---g-~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~ 255 (447)
|||...... . ..+....+.+|+.++..+++++... + .+++++||.. |.... .+....
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~~~-----------~~~~~~ 144 (225)
T PRK08177 78 NAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSVEL-----------PDGGEM 144 (225)
T ss_pred cCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccccc-----------CCCCCc
Confidence 999753321 1 1124457789999999998887543 2 3788888753 22111 112223
Q ss_pred ChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCC
Q 013226 256 SCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGP 291 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp 291 (447)
..|+.+|++.+.+++.++.+ .++++..++||.+-.+
T Consensus 145 ~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 145 PLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence 57999999999999998765 4799999999988765
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-14 Score=135.87 Aligned_cols=208 Identities=12% Similarity=0.061 Sum_probs=132.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCC------ccc---cccccC--CCceEEEeccccccc----
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGK------KDN---LIHHFG--NPRFELIRHDVVEPI---- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~------~~~---~~~~~~--~~~v~~~~~D~~~~~---- 176 (447)
.+++|+++||||+++||.++++.|++.|++|++++|+.... .+. ..+.+. ..++.++.+|+.++.
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 46789999999999999999999999999999999864321 111 111111 124667889987762
Q ss_pred --------ccCCCEEEEec-cCCC-----CCCccc---ChHHHHHHHHHHHHHHHHHHHH----CC-CeEEEEeCccc-c
Q 013226 177 --------LLEVDQIYHLA-CPAS-----PVHYKF---NPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSEV-Y 233 (447)
Q Consensus 177 --------~~~~d~Vih~A-g~~~-----~~~~~~---~~~~~~~~Nv~gt~~ll~aa~~----~g-~r~v~~SS~~v-~ 233 (447)
+..+|++|||| |... ...++. +..+.+++|+.++..+++++.. .+ .+||++||... +
T Consensus 85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~ 164 (305)
T PRK08303 85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEY 164 (305)
T ss_pred HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccc
Confidence 24599999999 7421 111111 2345788999998887776543 33 38999999642 2
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHh
Q 013226 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALR 310 (447)
Q Consensus 234 g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~ 310 (447)
.. .+......|+.+|++...+++.++.++ |+++..|.||.|-.+.. ..... ..
T Consensus 165 ~~--------------~~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~--------~~~~~--~~ 220 (305)
T PRK08303 165 NA--------------THYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMM--------LDAFG--VT 220 (305)
T ss_pred cC--------------cCCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHH--------HHhhc--cC
Confidence 11 011123569999999999999988764 79999999998865421 00000 00
Q ss_pred CCCe-EEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 311 KEPL-TVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 311 ~~~~-~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.... ..........-+...+|+|.++++++.++
T Consensus 221 ~~~~~~~~~~~p~~~~~~~peevA~~v~fL~s~~ 254 (305)
T PRK08303 221 EENWRDALAKEPHFAISETPRYVGRAVAALAADP 254 (305)
T ss_pred ccchhhhhccccccccCCCHHHHHHHHHHHHcCc
Confidence 0000 00000000012346899999999999765
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-14 Score=147.24 Aligned_cols=202 Identities=17% Similarity=0.203 Sum_probs=135.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
.++|+++||||+++||.+++++|+++|++|++++|+.+...+ ..... ..++.++.+|+.++. +.++
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARE-RADSL-GPDHHALAMDVSDEAQIREGFEQLHREFGRI 80 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-CCceeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 367899999999999999999999999999999986443222 11111 235667888887652 2459
Q ss_pred CEEEEeccCCCC--CC-cc---cChHHHHHHHHHHHHHHHHHHHHC------CCeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 181 DQIYHLACPASP--VH-YK---FNPVKTIKTNVVGTLNMLGLAKRV------GARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 181 d~Vih~Ag~~~~--~~-~~---~~~~~~~~~Nv~gt~~ll~aa~~~------g~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
|+||||||...+ .. .+ .+...++++|+.++..+++++... |.++|++||......
T Consensus 81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~------------- 147 (520)
T PRK06484 81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVA------------- 147 (520)
T ss_pred CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCC-------------
Confidence 999999997321 11 11 235568999999999988877542 238999999764321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHH-HHHHHhCCCeEEecCCCeeE
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNF-VAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 324 (447)
......|+.+|++.+.+++.++.+ .++++++++||.+..+........ ... ....... ++ ..
T Consensus 148 ---~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~--~~~~~~~~~~~--~~-------~~ 213 (520)
T PRK06484 148 ---LPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERA--GKLDPSAVRSR--IP-------LG 213 (520)
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhccc--chhhhHHHHhc--CC-------CC
Confidence 112367999999999999998876 489999999998876532100000 000 0000110 10 11
Q ss_pred ccccHHHHHHHHHHHHcCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~ 343 (447)
.+...+|+++++.+++...
T Consensus 214 ~~~~~~~va~~v~~l~~~~ 232 (520)
T PRK06484 214 RLGRPEEIAEAVFFLASDQ 232 (520)
T ss_pred CCcCHHHHHHHHHHHhCcc
Confidence 2467899999999888753
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-13 Score=127.89 Aligned_cols=211 Identities=16% Similarity=0.107 Sum_probs=141.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc----ccCCCceEEEeccccccc----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH----HFGNPRFELIRHDVVEPI---------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~----~~~~~~v~~~~~D~~~~~---------- 176 (447)
.++.+|+++||||+.+||++++.+|++.|++|++.+|+.+...+.... .....++..+.+|+.+..
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999975543222211 112346888999987542
Q ss_pred ---ccCCCEEEEeccCCCCCC--ccc---ChHHHHHHHHHH-HHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCC
Q 013226 177 ---LLEVDQIYHLACPASPVH--YKF---NPVKTIKTNVVG-TLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQA 242 (447)
Q Consensus 177 ---~~~~d~Vih~Ag~~~~~~--~~~---~~~~~~~~Nv~g-t~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~ 242 (447)
+.++|++|||||...... ++. .++..+++|+.| ...+..++.. .+. .++++||..-+..
T Consensus 84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~------- 156 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGP------- 156 (270)
T ss_pred HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccC-------
Confidence 356999999999865442 222 355689999996 5555555433 233 7888888764321
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCc-cCCCchHHHHHHHHHhCCCeEEec
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMC-IDDGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
.+. ....|+.+|.+.+.+.+.++.+ +|+++.+|-||.|..+... .........+..........+
T Consensus 157 -------~~~-~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~p--- 225 (270)
T KOG0725|consen 157 -------GPG-SGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVP--- 225 (270)
T ss_pred -------CCC-CcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccccc---
Confidence 011 1167999999999999999865 4899999999998887411 000111111211110111111
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.-.+...+|+++++.+++...
T Consensus 226 ----~gr~g~~~eva~~~~fla~~~ 246 (270)
T KOG0725|consen 226 ----LGRVGTPEEVAEAAAFLASDD 246 (270)
T ss_pred ----cCCccCHHHHHHhHHhhcCcc
Confidence 123677899999999988764
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=133.57 Aligned_cols=214 Identities=13% Similarity=0.111 Sum_probs=130.4
Q ss_pred EEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCCCEE
Q 013226 119 LVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEVDQI 183 (447)
Q Consensus 119 lVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d~V 183 (447)
+||||+++||.+++++|+++| ++|++++|+..... .....+ ...++.++.+|+.+.. ..++|++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l 79 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAE-RAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL 79 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHH-HHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 599999999999999999999 99999988643221 111111 1235777888887653 1358999
Q ss_pred EEeccCCCCC-Cc----ccChHHHHHHHHHHHHHHHHHH----HHCC---CeEEEEeCccccCCCC-C--CC--------
Q 013226 184 YHLACPASPV-HY----KFNPVKTIKTNVVGTLNMLGLA----KRVG---ARFLLTSTSEVYGDPL-Q--HP-------- 240 (447)
Q Consensus 184 ih~Ag~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~aa----~~~g---~r~v~~SS~~v~g~~~-~--~~-------- 240 (447)
|||||+.... .. .+.....+++|+.|+..+++++ ++.+ .+||++||...+-... . .+
T Consensus 80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~ 159 (308)
T PLN00015 80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 159 (308)
T ss_pred EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhh
Confidence 9999975322 11 1234568999999987776654 4443 4999999976431100 0 00
Q ss_pred -----CCCC---cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh----hCCcEEEEeeccccCCCCccCCCchHHHHHHHH
Q 013226 241 -----QAET---YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQA 308 (447)
Q Consensus 241 -----~~e~---~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~ 308 (447)
.++. .+.+..+..+...|+.||++.+.+++.++++ .|+.+++++||.|................. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~~~~-~~ 238 (308)
T PLN00015 160 GLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLF-PP 238 (308)
T ss_pred hhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccHHHHHHH-HH
Confidence 0000 0000112234567999999988887887765 379999999999964332111011100000 00
Q ss_pred HhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 309 LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
+.. .. ...+..+++.|+.++.++.+.
T Consensus 239 ~~~--~~-------~~~~~~pe~~a~~~~~l~~~~ 264 (308)
T PLN00015 239 FQK--YI-------TKGYVSEEEAGKRLAQVVSDP 264 (308)
T ss_pred HHH--HH-------hcccccHHHhhhhhhhhcccc
Confidence 010 00 012467899999999887753
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.3e-13 Score=127.24 Aligned_cols=205 Identities=12% Similarity=0.042 Sum_probs=128.7
Q ss_pred ccCCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccc--------cccCC---CceEEEecccc-
Q 013226 111 LQRKSLRILVTGG--AGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLI--------HHFGN---PRFELIRHDVV- 173 (447)
Q Consensus 111 ~~~~~~~ilVtGa--sG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~--------~~~~~---~~v~~~~~D~~- 173 (447)
..++||+++|||| +++||.++++.|+++|++|++ .|..+..+. .+. ..... .....+.+|+.
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 3478999999999 899999999999999999988 543221100 000 00000 01234444541
Q ss_pred -------c-----------------c-------cccCCCEEEEeccCCCC--CCcc----cChHHHHHHHHHHHHHHHHH
Q 013226 174 -------E-----------------P-------ILLEVDQIYHLACPASP--VHYK----FNPVKTIKTNVVGTLNMLGL 216 (447)
Q Consensus 174 -------~-----------------~-------~~~~~d~Vih~Ag~~~~--~~~~----~~~~~~~~~Nv~gt~~ll~a 216 (447)
+ . .+.++|++|||||.... .... ++....+++|+.++..++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 1 0 12459999999975321 1111 23566899999999888887
Q ss_pred HHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhh----hCCcEEEEeeccc
Q 013226 217 AKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRG----LGIEARIARIFNT 288 (447)
Q Consensus 217 a~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i 288 (447)
+... +.++|++||..... +.... ..|+.||++.+.+.+.++.+ .|+++..|.||.+
T Consensus 164 ~~p~m~~~G~II~isS~a~~~----------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v 227 (303)
T PLN02730 164 FGPIMNPGGASISLTYIASER----------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPL 227 (303)
T ss_pred HHHHHhcCCEEEEEechhhcC----------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCc
Confidence 6543 24899999976321 11111 36999999999999999865 3799999999988
Q ss_pred cCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 289 YGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 289 ~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
-.+-... .. .............++ ..+...+|++.++++++...
T Consensus 228 ~T~~~~~-~~-~~~~~~~~~~~~~pl---------~r~~~peevA~~~~fLaS~~ 271 (303)
T PLN02730 228 GSRAAKA-IG-FIDDMIEYSYANAPL---------QKELTADEVGNAAAFLASPL 271 (303)
T ss_pred cCchhhc-cc-ccHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHhCcc
Confidence 7653211 00 001111111111111 12457899999999999754
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-13 Score=125.46 Aligned_cols=160 Identities=9% Similarity=0.022 Sum_probs=112.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------cc-
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------LL- 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~- 178 (447)
+++|+++||||+++||++++++|+++|++|++++|+.....+...+. ....++..+.+|+.++. +.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 57889999999999999999999999999999988654322111110 01234566777876552 24
Q ss_pred CCCEEEEeccCCCC-CCccc----ChHHHHHHHHHHHHHHHHHH----HHCC--CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 179 EVDQIYHLACPASP-VHYKF----NPVKTIKTNVVGTLNMLGLA----KRVG--ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~-~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.+|++|||||.... ..+.+ ...+.+++|+.++..+++++ ++.+ ..+|++||...+
T Consensus 83 ~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-------------- 148 (227)
T PRK08862 83 APDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH-------------- 148 (227)
T ss_pred CCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC--------------
Confidence 69999999985322 22222 22346677888877665543 3333 389999986422
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCC
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGP 291 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp 291 (447)
.....|+.+|+..+.+.+.++.+ +++++..|.||.+-.+
T Consensus 149 -----~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 -----QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 11367999999999999998875 4899999999988765
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-13 Score=125.28 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=120.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc--------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL-------------- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------------- 177 (447)
+..+|-|+|||+-+++|..++++|.++|++|++-+-.++.. +.+......++...+..|++++..
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~ga-e~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~ 104 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGA-ESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGE 104 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchH-HHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccc
Confidence 34667899999999999999999999999999988543332 233333336678888999988743
Q ss_pred cCCCEEEEeccCCCC---CCcc--cChHHHHHHHHHHHHHHHHHH----HHCCCeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASP---VHYK--FNPVKTIKTNVVGTLNMLGLA----KRVGARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~---~~~~--~~~~~~~~~Nv~gt~~ll~aa----~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.+.-.||||||+... .+|- ++...++++|+.|+.++..+. +++..|+|++||..- .
T Consensus 105 ~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G--R------------- 169 (322)
T KOG1610|consen 105 DGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG--R------------- 169 (322)
T ss_pred ccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc--C-------------
Confidence 247789999996532 2222 246779999999988777764 556669999999762 1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeecc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFN 287 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~ 287 (447)
.+.....+|+.||++.|.+...+++| +|+++.+|-||.
T Consensus 170 -~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~ 210 (322)
T KOG1610|consen 170 -VALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGF 210 (322)
T ss_pred -ccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCc
Confidence 23333478999999999999998865 599999999993
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.2e-13 Score=118.18 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=111.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccc--ccc--CCCceEEEeccccccc------------cc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLI--HHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~--~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
++++||||+|+||.+++++|+++|+ .|+++.|+......... ..+ ...++.++..|+.++. ..
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4699999999999999999999997 57777775433221110 111 1246778888887642 13
Q ss_pred CCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCCCC
Q 013226 179 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~ 252 (447)
.+|.|||+||........ .+....+++|+.++.++++++++.+. ++|++||.. .++.
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~~----------------- 143 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLGN----------------- 143 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcCC-----------------
Confidence 479999999965332211 23456799999999999999987775 899999876 3332
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccc
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNT 288 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i 288 (447)
.....|+.+|...+.+++.+ ...+++++.+.||.+
T Consensus 144 ~~~~~y~~sk~~~~~~~~~~-~~~~~~~~~~~~g~~ 178 (180)
T smart00822 144 PGQANYAAANAFLDALAAHR-RARGLPATSINWGAW 178 (180)
T ss_pred CCchhhHHHHHHHHHHHHHH-HhcCCceEEEeeccc
Confidence 12367999999999999665 456899999998764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=120.04 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=119.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
..|.+||||||+++||..++++|.+.|.+|++..|+.....+.. ...+.+....+|+.|.. ....
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~---~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~l 79 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAK---AENPEIHTEVCDVADRDSRRELVEWLKKEYPNL 79 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHH---hcCcchheeeecccchhhHHHHHHHHHhhCCch
Confidence 46789999999999999999999999999999998643322211 12345666667776653 2348
Q ss_pred CEEEEeccCCCCCCccc------ChHHHHHHHHHHHHHHHHHHHH----CC-CeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 181 DQIYHLACPASPVHYKF------NPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~------~~~~~~~~Nv~gt~~ll~aa~~----~g-~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+++|||||+....++.. +..+-+.+|+.++.+|..+... .. .-+|.+||.-.|
T Consensus 80 NvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLaf---------------- 143 (245)
T COG3967 80 NVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAF---------------- 143 (245)
T ss_pred heeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEecccccc----------------
Confidence 99999999987655442 1345678999999988877644 32 379999998655
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCC
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGP 291 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp 291 (447)
.|......|+.+|++...+..+++.+ .++++.-+-|+.|-.+
T Consensus 144 vPm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 144 VPMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred CcccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 23333457999999999998888654 4789999999988764
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-13 Score=121.08 Aligned_cols=209 Identities=19% Similarity=0.174 Sum_probs=142.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc--cccccccCCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK--DNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~--~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
.+||++++|||.|+||..+.++|+++|..+.+++-+.+..+ .++........+-++++|+++.. +.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg 82 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFG 82 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhC
Confidence 46999999999999999999999999998888776555432 22333334567899999998752 24
Q ss_pred CCCEEEEeccCCCCCCcccChHHHHHHHHHHHHH----HHHHHHHC-C---CeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 179 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLN----MLGLAKRV-G---ARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~----ll~aa~~~-g---~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
.+|++||+||+... .+.+..+.+|+.|..+ .+..+.+. | .-+|.+||..-. .
T Consensus 83 ~iDIlINgAGi~~d----kd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL----------------~ 142 (261)
T KOG4169|consen 83 TIDILINGAGILDD----KDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGL----------------D 142 (261)
T ss_pred ceEEEEcccccccc----hhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecccccc----------------C
Confidence 59999999998663 3466677888877544 45555432 2 279999997532 3
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHh-----hhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC----C
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHR-----GLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG----K 321 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~-----~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 321 (447)
|...+..|++||+..-.+.++++. +.|+++..++||.+- ..++..+-......-+++. -
T Consensus 143 P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~------------t~l~~~~~~~~~~~e~~~~~~~~l 210 (261)
T KOG4169|consen 143 PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTR------------TDLAENIDASGGYLEYSDSIKEAL 210 (261)
T ss_pred ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcch------------HHHHHHHHhcCCcccccHHHHHHH
Confidence 444457899999999999999654 459999999997643 2222222221111111110 0
Q ss_pred eeEccccHHHHHHHHHHHHcCCCCC-cEEecCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDHVG-PFNLGNP 353 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~~g-~~~i~~~ 353 (447)
....-....+|++-++.++|....| +|-+..+
T Consensus 211 ~~~~~q~~~~~a~~~v~aiE~~~NGaiw~v~~g 243 (261)
T KOG4169|consen 211 ERAPKQSPACCAINIVNAIEYPKNGAIWKVDSG 243 (261)
T ss_pred HHcccCCHHHHHHHHHHHHhhccCCcEEEEecC
Confidence 0112356789999999999998887 4444443
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=119.46 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=107.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCC-CCCcccccccc--CCCceEEEeccccccc------------ccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYF-TGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~-~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 179 (447)
|+++||||+|.||+.++++|+++|. .|+++.|+. ....+.+...+ ...++.++.+|+.+.. ...
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5799999999999999999999965 667777750 11112221111 2368899999987763 235
Q ss_pred CCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
+|+||||||........+. ..+++++|+.+...+.+++...+. +||++||.... .+...
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~----------------~~~~~ 144 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGV----------------RGSPG 144 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGT----------------SSSTT
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhc----------------cCCCC
Confidence 9999999998765444443 346899999999999999887444 99999998743 22233
Q ss_pred CChHHHHHHHHHHHHHHHHhhh
Q 013226 255 RSCYDEGKRTAETLTMDYHRGL 276 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~~ 276 (447)
...|+.+|++.+.+++.++.|.
T Consensus 145 ~~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 145 MSAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999998763
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=122.28 Aligned_cols=163 Identities=19% Similarity=0.167 Sum_probs=117.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCC-cccccccc--CC-CceEEEeccccc-cc-----------
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGK-KDNLIHHF--GN-PRFELIRHDVVE-PI----------- 176 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~-~~~~~~~~--~~-~~v~~~~~D~~~-~~----------- 176 (447)
+++|+++||||+++||..+++.|+++|+.|+++.+..... .+...... .. ..+.+...|+++ ..
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~ 82 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEE 82 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999888764431 11111110 01 356777788876 32
Q ss_pred -ccCCCEEEEeccCCCCC-Ccc----cChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 177 -LLEVDQIYHLACPASPV-HYK----FNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~-~~~----~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+.++|++|||||..... ... +..+..+++|+.|...+.+++...-. +||++||.... ....
T Consensus 83 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~---------- 151 (251)
T COG1028 83 EFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPP---------- 151 (251)
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCC----------
Confidence 23499999999986431 211 23556899999999888886554444 99999998753 2111
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCC
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGP 291 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp 291 (447)
. ...|+.||++.+.+.+.++.+ .|+++..|.||.+-.+
T Consensus 152 ----~-~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~ 192 (251)
T COG1028 152 ----G-QAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP 192 (251)
T ss_pred ----C-cchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence 0 378999999999999998854 5899999999955543
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=119.99 Aligned_cols=206 Identities=11% Similarity=-0.005 Sum_probs=125.9
Q ss_pred ccCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCC------CCC-ccccc-----cccC-------------CC
Q 013226 111 LQRKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYF------TGK-KDNLI-----HHFG-------------NP 163 (447)
Q Consensus 111 ~~~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~------~~~-~~~~~-----~~~~-------------~~ 163 (447)
..+.||+++|||++ .+||+++++.|+++|++|++.++.+ ... ..... .... ..
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~ 83 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFD 83 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcC
Confidence 45689999999995 9999999999999999999976431 000 00000 0000 00
Q ss_pred ceEEEeccccc--------------------ccccCCCEEEEeccCCC--CCCcc----cChHHHHHHHHHHHHHHHHHH
Q 013226 164 RFELIRHDVVE--------------------PILLEVDQIYHLACPAS--PVHYK----FNPVKTIKTNVVGTLNMLGLA 217 (447)
Q Consensus 164 ~v~~~~~D~~~--------------------~~~~~~d~Vih~Ag~~~--~~~~~----~~~~~~~~~Nv~gt~~ll~aa 217 (447)
..+-+..|+.+ ..+.++|++|||||... ..... ++....+++|+.|+.++++++
T Consensus 84 ~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~ 163 (299)
T PRK06300 84 TPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHF 163 (299)
T ss_pred CCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 11111111111 11245999999998632 11221 134568899999999999887
Q ss_pred HHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhh----hCCcEEEEeecccc
Q 013226 218 KRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRG----LGIEARIARIFNTY 289 (447)
Q Consensus 218 ~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i~ 289 (447)
... +.++|++||..... +.... ..|+.+|++.+.+++.++.+ +|++++.|.||.+-
T Consensus 164 ~p~m~~~G~ii~iss~~~~~----------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~ 227 (299)
T PRK06300 164 GPIMNPGGSTISLTYLASMR----------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLA 227 (299)
T ss_pred HHHhhcCCeEEEEeehhhcC----------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCcc
Confidence 653 23889998865321 11111 36999999999999998865 38999999999887
Q ss_pred CCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 290 GPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 290 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.+..... . .............++ ..+...+|++.++++++...
T Consensus 228 T~~~~~~-~-~~~~~~~~~~~~~p~---------~r~~~peevA~~v~~L~s~~ 270 (299)
T PRK06300 228 SRAGKAI-G-FIERMVDYYQDWAPL---------PEPMEAEQVGAAAAFLVSPL 270 (299)
T ss_pred Chhhhcc-c-ccHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHhCcc
Confidence 6532100 0 001111111111111 12457899999999998754
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-13 Score=126.68 Aligned_cols=195 Identities=18% Similarity=0.169 Sum_probs=134.3
Q ss_pred cCC--ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------c-cCCCEEEEe
Q 013226 122 GGA--GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------L-LEVDQIYHL 186 (447)
Q Consensus 122 Gas--G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~-~~~d~Vih~ 186 (447)
|++ ++||.+++++|+++|++|++++|+.......+.........+++.+|+.++. + .++|++|||
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~ 80 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNN 80 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEec
Confidence 566 9999999999999999999999975542222222222222446999997662 3 569999999
Q ss_pred ccCCCC----CCccc----ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC
Q 013226 187 ACPASP----VHYKF----NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR 255 (447)
Q Consensus 187 Ag~~~~----~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~ 255 (447)
++.... ..+.+ .....+++|+.++..+++++.+. +.++|++||.... .+....
T Consensus 81 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~----------------~~~~~~ 144 (241)
T PF13561_consen 81 AGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQ----------------RPMPGY 144 (241)
T ss_dssp EESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGT----------------SBSTTT
T ss_pred ccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhc----------------ccCccc
Confidence 997654 22222 24458899999999998887543 3489999987642 122233
Q ss_pred ChHHHHHHHHHHHHHHHHh---h-hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHH
Q 013226 256 SCYDEGKRTAETLTMDYHR---G-LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~---~-~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 331 (447)
..|+.+|++.+.+++.++. . +||++.+|.||.+..+.... ......+........++. -+...+|
T Consensus 145 ~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~--~~~~~~~~~~~~~~~pl~---------r~~~~~e 213 (241)
T PF13561_consen 145 SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTER--IPGNEEFLEELKKRIPLG---------RLGTPEE 213 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHH--HHTHHHHHHHHHHHSTTS---------SHBEHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhc--cccccchhhhhhhhhccC---------CCcCHHH
Confidence 6899999999999999875 3 68999999999887653100 000133333333333221 2468899
Q ss_pred HHHHHHHHHcCC
Q 013226 332 LVEGLIRLMEGD 343 (447)
Q Consensus 332 ~a~ai~~~l~~~ 343 (447)
+|+++++++.+.
T Consensus 214 vA~~v~fL~s~~ 225 (241)
T PF13561_consen 214 VANAVLFLASDA 225 (241)
T ss_dssp HHHHHHHHHSGG
T ss_pred HHHHHHHHhCcc
Confidence 999999999865
|
... |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=113.87 Aligned_cols=157 Identities=16% Similarity=0.129 Sum_probs=114.9
Q ss_pred CCCeEEEEcCC-ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-------------ccC
Q 013226 114 KSLRILVTGGA-GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-------------LLE 179 (447)
Q Consensus 114 ~~~~ilVtGas-G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-------------~~~ 179 (447)
..++|+|||++ |+||.+|+++|.++|+.|.+..|+.+...+.. ...++.....|+.++. ...
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~----~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gk 81 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLA----IQFGLKPYKLDVSKPEEVVTVSGEVRANPDGK 81 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHH----HhhCCeeEEeccCChHHHHHHHHHHhhCCCCc
Confidence 45679998876 99999999999999999999998655432221 1224666777776653 234
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
.|++|||||.......-+ ..++++++|+.|..++.++... +...||++.|..+|. |
T Consensus 82 ld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v----------------p 145 (289)
T KOG1209|consen 82 LDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV----------------P 145 (289)
T ss_pred eEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe----------------c
Confidence 899999999754322211 2456899999998887777543 334899999998663 3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHh---hhCCcEEEEeeccccC
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHR---GLGIEARIARIFNTYG 290 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~---~~~i~~~ivRp~~i~G 290 (447)
....+.|.+||++...+.+.++- .+|++++.+-+|.|-.
T Consensus 146 fpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T 187 (289)
T KOG1209|consen 146 FPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVAT 187 (289)
T ss_pred cchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceec
Confidence 44448899999999998888753 4588888888877654
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-12 Score=112.54 Aligned_cols=164 Identities=18% Similarity=0.105 Sum_probs=114.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecC-CCCCccccccc-cCCCceEEEeccccccc--------------
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNY-FTGKKDNLIHH-FGNPRFELIRHDVVEPI-------------- 176 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~-~~~~~~~~~~~-~~~~~v~~~~~D~~~~~-------------- 176 (447)
..+.|+||||+.+||--|+++|++. |-++++..++ ++...+++... ...+++.+++.|++...
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg 81 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVG 81 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcc
Confidence 3456999999999999999999986 5566655444 44432222221 24678999999996653
Q ss_pred ccCCCEEEEeccCCCCCCcccC-----hHHHHHHHHHHHHHHHHHH----HHC-----C-------CeEEEEeCccccCC
Q 013226 177 LLEVDQIYHLACPASPVHYKFN-----PVKTIKTNVVGTLNMLGLA----KRV-----G-------ARFLLTSTSEVYGD 235 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~~-----~~~~~~~Nv~gt~~ll~aa----~~~-----g-------~r~v~~SS~~v~g~ 235 (447)
..++|.+|||||+......... ..+.+++|..|+..+.+++ ++. | +.+|++||...-
T Consensus 82 ~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s-- 159 (249)
T KOG1611|consen 82 SDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS-- 159 (249)
T ss_pred cCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc--
Confidence 2468999999998765443332 3357899999987777653 221 1 269989987632
Q ss_pred CCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccC
Q 013226 236 PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYG 290 (447)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~G 290 (447)
... ....+...|.+||.+.-.+.++++-+ .++-++.++||+|-.
T Consensus 160 ~~~-----------~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~T 206 (249)
T KOG1611|consen 160 IGG-----------FRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQT 206 (249)
T ss_pred cCC-----------CCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEc
Confidence 000 23334589999999999999998644 367788899998864
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-13 Score=117.21 Aligned_cols=203 Identities=19% Similarity=0.187 Sum_probs=140.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccc-----ccc---CC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEP-----ILL---EV 180 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~-----~~~---~~ 180 (447)
..+.|+.|++||+.-+||+.++..|.+.|++|+++.|.+. ++.... ...-+.-+.+|+... .+. .+
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a----~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pi 78 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEA----NLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPI 78 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHH----HHHHHHhhCCcceeeeEecccHHHHHHHhhcccCch
Confidence 4678999999999999999999999999999999998533 222221 122366677777443 222 37
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC--eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA--RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~--r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
|.++||||+.....+.+ ..+..|++|+.+..++.+...+ .++ .+|.+||.+.. .
T Consensus 79 dgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~----------------R 142 (245)
T KOG1207|consen 79 DGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI----------------R 142 (245)
T ss_pred hhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc----------------c
Confidence 99999999876555443 3445788999998888777432 333 69999998632 3
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
+....+.|+.+|++.+.+.+.++-+. .|++..+.|..+...-.. .+|-....++ ++. +.-...-|.
T Consensus 143 ~~~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~-------dnWSDP~K~k-~mL---~riPl~rFa 211 (245)
T KOG1207|consen 143 PLDNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGR-------DNWSDPDKKK-KML---DRIPLKRFA 211 (245)
T ss_pred ccCCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccc-------cccCCchhcc-chh---hhCchhhhh
Confidence 45555899999999999999988765 588999999887743211 0111111111 111 001123478
Q ss_pred cHHHHHHHHHHHHcCCC
Q 013226 328 FVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~ 344 (447)
.|+.++.++++++.+..
T Consensus 212 EV~eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 212 EVDEVVNAVLFLLSDNS 228 (245)
T ss_pred HHHHHHhhheeeeecCc
Confidence 89999999999998764
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-11 Score=104.67 Aligned_cols=195 Identities=14% Similarity=0.133 Sum_probs=132.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 190 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~~ 190 (447)
|+|.|.||||-+|++|+++..+|||+|+++.|+..+.... ..+.+++.|+.+. .+.+.|+||..-+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-------QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-------ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 6899999999999999999999999999999975443221 2556677777654 467899999877643
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
.+ +..+ ........|++.++.+++ |++.+...+ .|-+++..-+ + .|.-|...|...+..+|.
T Consensus 74 ~~-----~~~~---~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLv--D-----~p~fP~ey~~~A~~~ae~- 137 (211)
T COG2910 74 AS-----DNDE---LHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLV--D-----TPDFPAEYKPEALAQAEF- 137 (211)
T ss_pred CC-----ChhH---HHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceee--c-----CCCCchhHHHHHHHHHHH-
Confidence 21 1111 222236678888888888 999988766 5544442111 1 233344556677776664
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~ 345 (447)
+..+..+.+++++.+-|+..|-|+...... .+.+..+.. .. .-.++|+.+|.|.+++.-++++..
T Consensus 138 L~~Lr~~~~l~WTfvSPaa~f~PGerTg~y---------rlggD~ll~-n~--~G~SrIS~aDYAiA~lDe~E~~~h 202 (211)
T COG2910 138 LDSLRAEKSLDWTFVSPAAFFEPGERTGNY---------RLGGDQLLV-NA--KGESRISYADYAIAVLDELEKPQH 202 (211)
T ss_pred HHHHhhccCcceEEeCcHHhcCCccccCce---------EeccceEEE-cC--CCceeeeHHHHHHHHHHHHhcccc
Confidence 456666677999999999999886532211 122333332 21 224789999999999999998753
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=121.18 Aligned_cols=207 Identities=20% Similarity=0.130 Sum_probs=122.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc------ccc----CC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP------ILL----EV 180 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~----~~ 180 (447)
...+.++|+|+||+|.+|+-+++.|+++|+.|+++.|+...................+..|.... ... ..
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~ 154 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGV 154 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccccc
Confidence 45577889999999999999999999999999999997655444332111122222333332221 111 23
Q ss_pred CEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHH
Q 013226 181 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYD 259 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~ 259 (447)
.+++-++|- ....+ +-..-+.+...|+.|+++||+.+|+ |||++||+..- ..+..+| .......+.
T Consensus 155 ~~v~~~~gg--rp~~e-d~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~------~~~~~~~----~~~~~~~~~ 221 (411)
T KOG1203|consen 155 VIVIKGAGG--RPEEE-DIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGT------KFNQPPN----ILLLNGLVL 221 (411)
T ss_pred eeEEecccC--CCCcc-cCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCc------ccCCCch----hhhhhhhhh
Confidence 456666552 22211 1222346889999999999999999 99999987531 1111111 010023445
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHH
Q 013226 260 EGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339 (447)
Q Consensus 260 ~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~ 339 (447)
.+|..+|.+++ +.|++++||||+...-...... . ......+....+++. --.+.-.|+|+.++.+
T Consensus 222 ~~k~~~e~~~~----~Sgl~ytiIR~g~~~~~~~~~~-----~----~~~~~~~~~~~~~~~--~~~i~r~~vael~~~a 286 (411)
T KOG1203|consen 222 KAKLKAEKFLQ----DSGLPYTIIRPGGLEQDTGGQR-----E----VVVDDEKELLTVDGG--AYSISRLDVAELVAKA 286 (411)
T ss_pred HHHHhHHHHHH----hcCCCcEEEeccccccCCCCcc-----e----ecccCcccccccccc--ceeeehhhHHHHHHHH
Confidence 77777777665 4799999999987653221100 0 001111111111111 1256778999999998
Q ss_pred HcCCCC
Q 013226 340 MEGDHV 345 (447)
Q Consensus 340 l~~~~~ 345 (447)
+.++..
T Consensus 287 ll~~~~ 292 (411)
T KOG1203|consen 287 LLNEAA 292 (411)
T ss_pred Hhhhhh
Confidence 887643
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-12 Score=117.10 Aligned_cols=200 Identities=19% Similarity=0.162 Sum_probs=138.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc---ccCCCceEEEeccccccc--------c----cCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH---HFGNPRFELIRHDVVEPI--------L----LEV 180 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~---~~~~~~v~~~~~D~~~~~--------~----~~~ 180 (447)
++|+||||+.+||..++..+..+|+.|.++.|......+...+ .....++.+..+|+.+-. + ..+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~ 113 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI 113 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence 6899999999999999999999999999999964432221111 112234778888884331 1 248
Q ss_pred CEEEEeccCCCCCCcccCh----HHHHHHHHHHHHHHHHHHHHC----C-C-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 181 DQIYHLACPASPVHYKFNP----VKTIKTNVVGTLNMLGLAKRV----G-A-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~~----~~~~~~Nv~gt~~ll~aa~~~----g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
|.+|||||..-+..+++.. ...+++|..|+.++++++... . . +|+.+||...- -
T Consensus 114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~----------------~ 177 (331)
T KOG1210|consen 114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAM----------------L 177 (331)
T ss_pred ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhh----------------c
Confidence 9999999988777776642 347899999999999876432 2 2 89999987621 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
++...+.|..+|.+...++..+.+| +++.++..-|+.+-.|+.... + ......+..-. ..-+.+
T Consensus 178 ~i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~E-n----------~tkP~~t~ii~--g~ss~~ 244 (331)
T KOG1210|consen 178 GIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERE-N----------KTKPEETKIIE--GGSSVI 244 (331)
T ss_pred CcccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccc-c----------ccCchheeeec--CCCCCc
Confidence 2333488999999999999888765 489999999999998874210 0 00100111001 112458
Q ss_pred cHHHHHHHHHHHHcCCC
Q 013226 328 FVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~ 344 (447)
.-+++|.+++.-+.+..
T Consensus 245 ~~e~~a~~~~~~~~rg~ 261 (331)
T KOG1210|consen 245 KCEEMAKAIVKGMKRGN 261 (331)
T ss_pred CHHHHHHHHHhHHhhcC
Confidence 88999999988776543
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=109.09 Aligned_cols=218 Identities=20% Similarity=0.194 Sum_probs=149.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc-cccccCCCceEEEecccccccccCCCEEEEeccCCCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN-LIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 194 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~-~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~ 194 (447)
...++.|++||.|.++++.....|++|.++.|+..+.-.+ ..........+.+..|..+..+.++..++-+++-..
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~~l~sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~ggfg--- 129 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQTLSSWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGGFG--- 129 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcchhhCCCcccchhhccccccCcchhhhcCCcccHHHhcCcc---
Confidence 3589999999999999999999999999998864422111 111111123344445556666778888998887432
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 013226 195 YKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 273 (447)
Q Consensus 195 ~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~ 273 (447)
+...+.++|-....+-.+++.++|+ +|+|+|... ||- .+..+ ..|-.+|..+|..+..
T Consensus 130 ---n~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d-~~~--------------~~~i~-rGY~~gKR~AE~Ell~-- 188 (283)
T KOG4288|consen 130 ---NIILMDRINGTANINAVKAAAKAGVPRFVYISAHD-FGL--------------PPLIP-RGYIEGKREAEAELLK-- 188 (283)
T ss_pred ---chHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh-cCC--------------CCccc-hhhhccchHHHHHHHH--
Confidence 3456777888888888999999998 999999754 221 23333 5899999999986655
Q ss_pred hhhCCcEEEEeeccccCCCCccCCCc---hHHHHHHHHHhCC-----CeEEecCCCeeEccccHHHHHHHHHHHHcCCCC
Q 013226 274 RGLGIEARIARIFNTYGPRMCIDDGR---VVSNFVAQALRKE-----PLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 274 ~~~~i~~~ivRp~~i~Gp~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~ 345 (447)
.++.+-+++|||.+||.+.-..... .+...+....+.. .+++.+ ......+.++++|.+.+.+++++.-
T Consensus 189 -~~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg--~l~~ppvnve~VA~aal~ai~dp~f 265 (283)
T KOG4288|consen 189 -KFRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLG--PLLAPPVNVESVALAALKAIEDPDF 265 (283)
T ss_pred -hcCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccc--cccCCCcCHHHHHHHHHHhccCCCc
Confidence 4678899999999999853322111 1223333333332 244433 3567899999999999999998864
Q ss_pred CcEEecCCCccCHHHHHHHHHH
Q 013226 346 GPFNLGNPGEFTMLELAEVVQE 367 (447)
Q Consensus 346 g~~~i~~~~~~s~~el~~~i~~ 367 (447)
.+.+++.|+.++-.+
T Consensus 266 -------~Gvv~i~eI~~~a~k 280 (283)
T KOG4288|consen 266 -------KGVVTIEEIKKAAHK 280 (283)
T ss_pred -------CceeeHHHHHHHHHH
Confidence 246677777776554
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=114.64 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=122.5
Q ss_pred HHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----c----cCCCEEEEeccCCCCCCcccChHH
Q 013226 131 LVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L----LEVDQIYHLACPASPVHYKFNPVK 201 (447)
Q Consensus 131 l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~----~~~d~Vih~Ag~~~~~~~~~~~~~ 201 (447)
++++|+++|++|++++|+..... ...++.+|+.+.. + .++|+||||||... ..+...
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~----------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~~~~~ 66 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT----------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TAPVEL 66 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh----------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CCCHHH
Confidence 47889999999999998643210 1245667775542 1 35899999999653 235678
Q ss_pred HHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCc-----------CCCCCCCCCCChHHHHHHHHHH
Q 013226 202 TIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETY-----------WGNVNPIGVRSCYDEGKRTAET 267 (447)
Q Consensus 202 ~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~-----------~~~~~~~~~~~~Y~~sK~~~E~ 267 (447)
.+++|+.++..+++++.+. +.+||++||...++.+...+..+.. |....+......|+.||++.+.
T Consensus 67 ~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~ 146 (241)
T PRK12428 67 VARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALIL 146 (241)
T ss_pred hhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHHH
Confidence 8999999999999998653 2499999999887643221111110 0000233445789999999999
Q ss_pred HHHHHH-h---hhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 268 LTMDYH-R---GLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 268 ~~~~~~-~---~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
+++.++ . ..|+++++|+||.+.++-... .....-.........+ ...+...+|+|+++++++...
T Consensus 147 ~~~~la~~e~~~~girvn~v~PG~v~T~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~pe~va~~~~~l~s~~ 215 (241)
T PRK12428 147 WTMRQAQPWFGARGIRVNCVAPGPVFTPILGD----FRSMLGQERVDSDAKR-------MGRPATADEQAAVLVFLCSDA 215 (241)
T ss_pred HHHHHHHHhhhccCeEEEEeecCCccCccccc----chhhhhhHhhhhcccc-------cCCCCCHHHHHHHHHHHcChh
Confidence 999888 4 358999999999998874211 0000000001000001 112567899999999988654
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.8e-12 Score=106.23 Aligned_cols=172 Identities=15% Similarity=0.116 Sum_probs=122.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.+++|..+|.||||-.|+.+++++++.+. +|+++.|+....++.- ..+....+|+-..|-......++|+.|++-|.
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~-k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgT 93 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATD-KVVAQVEVDFSKLSQLATNEQGPDVLFCALGT 93 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcccc-ceeeeEEechHHHHHHHhhhcCCceEEEeecc
Confidence 45778899999999999999999999985 8999998753322211 11111123333334444466789999999886
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
+.... ..+-.+++.......+.++|++.|+ +|+++||.+. .....-.|...|...|+-
T Consensus 94 TRgka---GadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GA------------------d~sSrFlY~k~KGEvE~~ 152 (238)
T KOG4039|consen 94 TRGKA---GADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGA------------------DPSSRFLYMKMKGEVERD 152 (238)
T ss_pred ccccc---ccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCC------------------Ccccceeeeeccchhhhh
Confidence 54322 2344667778888899999999998 9999999864 122235799999999998
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHH
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQA 308 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~ 308 (447)
+.++.=+ ++.|+|||.+.|.+.....+.|..++....
T Consensus 153 v~eL~F~---~~~i~RPG~ll~~R~esr~geflg~~~~a~ 189 (238)
T KOG4039|consen 153 VIELDFK---HIIILRPGPLLGERTESRQGEFLGNLTAAL 189 (238)
T ss_pred hhhcccc---EEEEecCcceecccccccccchhhheehhh
Confidence 8775322 588999999999887666666655554433
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=137.81 Aligned_cols=161 Identities=19% Similarity=0.122 Sum_probs=120.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCc---------------------------------------
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKK--------------------------------------- 153 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~--------------------------------------- 153 (447)
+++++|||||+++||..++++|+++ |++|++++|+.....
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 6789999999999999999999998 699999998721000
Q ss_pred ----ccccc---cc--CCCceEEEecccccccc-----------cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHH
Q 013226 154 ----DNLIH---HF--GNPRFELIRHDVVEPIL-----------LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVG 209 (447)
Q Consensus 154 ----~~~~~---~~--~~~~v~~~~~D~~~~~~-----------~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~g 209 (447)
.+... .+ ....+.++.+|+++... .++|.||||||+........ +....+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 00000 00 12357889999987631 25899999999865433322 355689999999
Q ss_pred HHHHHHHHHHCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh-CCcEEEEeec
Q 013226 210 TLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL-GIEARIARIF 286 (447)
Q Consensus 210 t~~ll~aa~~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-~i~~~ivRp~ 286 (447)
+.++++++..... +||++||.. .+|... ...|+.+|...+.+.+.++.+. +++++.|.||
T Consensus 2156 ~~~Ll~al~~~~~~~IV~~SSvag~~G~~g-----------------qs~YaaAkaaL~~la~~la~~~~~irV~sI~wG 2218 (2582)
T TIGR02813 2156 LLSLLAALNAENIKLLALFSSAAGFYGNTG-----------------QSDYAMSNDILNKAALQLKALNPSAKVMSFNWG 2218 (2582)
T ss_pred HHHHHHHHHHhCCCeEEEEechhhcCCCCC-----------------cHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECC
Confidence 9999999987654 899999987 455432 2679999999999998887765 6899999998
Q ss_pred cccCC
Q 013226 287 NTYGP 291 (447)
Q Consensus 287 ~i~Gp 291 (447)
.+-|+
T Consensus 2219 ~wdtg 2223 (2582)
T TIGR02813 2219 PWDGG 2223 (2582)
T ss_pred eecCC
Confidence 77654
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=102.86 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=103.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc--ccccccc--CCCceEEEecccccccc------------cC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK--DNLIHHF--GNPRFELIRHDVVEPIL------------LE 179 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~--~~~~~~~--~~~~v~~~~~D~~~~~~------------~~ 179 (447)
+++||||+|.||..+++.|+++|. +|+++.|+..... ......+ ....+.+..+|++++.. ..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 589999999999999999999986 7888988732221 1111111 24578999999987631 35
Q ss_pred CCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
++.|||+||........+. ....+..-+.|+.+|.++...... .||++||.+ ++|.+.+
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~gq--------------- 146 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGPGQ--------------- 146 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-TTB---------------
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCcch---------------
Confidence 7999999998654433332 334678889999999999988777 889999987 6776544
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhCCcEEEEeecc
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~ 287 (447)
..|+..-...+.+++... ..+.++.+|.-+.
T Consensus 147 --~~YaaAN~~lda~a~~~~-~~g~~~~sI~wg~ 177 (181)
T PF08659_consen 147 --SAYAAANAFLDALARQRR-SRGLPAVSINWGA 177 (181)
T ss_dssp --HHHHHHHHHHHHHHHHHH-HTTSEEEEEEE-E
T ss_pred --HhHHHHHHHHHHHHHHHH-hCCCCEEEEEccc
Confidence 789999999999887754 4588888887643
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-10 Score=106.22 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=115.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc---cccccccCCCceEEEeccccccc---------cc--CC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK---DNLIHHFGNPRFELIRHDVVEPI---------LL--EV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~---~~~~~~~~~~~v~~~~~D~~~~~---------~~--~~ 180 (447)
|+=..|||||.+||++.+++|+++|.+|+++.|..++.. .++.+... .++.++..|.++.. +. .+
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK-VEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC-cEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 455899999999999999999999999999999755422 12222212 45667777765554 22 36
Q ss_pred CEEEEeccCCC--CCCcccC----hHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 181 DQIYHLACPAS--PVHYKFN----PVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 181 d~Vih~Ag~~~--~~~~~~~----~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
-++|||+|... |..+.+. ..+.+.+|+.++..+.+... +.+. -+|++||.+-.
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~---------------- 191 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL---------------- 191 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc----------------
Confidence 78999999865 3222222 23467889998777766643 3343 79999997621
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCC
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRM 293 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~ 293 (447)
.|....+.|+.+|...+.+...+.+|+ ||.+-.+-|..|-++-.
T Consensus 192 ~p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~ 238 (312)
T KOG1014|consen 192 IPTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMA 238 (312)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecccc
Confidence 344445899999999999988887765 88899998888877543
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-11 Score=102.05 Aligned_cols=163 Identities=24% Similarity=0.304 Sum_probs=116.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+.+|...+||||.+++|+..+++|.++|..|.++|-.... ..+..+.++ .++-+...|++.+. +..
T Consensus 6 s~kglvalvtggasglg~ataerlakqgasv~lldlp~sk-g~~vakelg-~~~vf~padvtsekdv~aala~ak~kfgr 83 (260)
T KOG1199|consen 6 STKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSK-GADVAKELG-GKVVFTPADVTSEKDVRAALAKAKAKFGR 83 (260)
T ss_pred hhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCccc-chHHHHHhC-CceEEeccccCcHHHHHHHHHHHHhhccc
Confidence 3477889999999999999999999999999999874332 233333332 36788889987652 346
Q ss_pred CCEEEEeccCCCCCC-c---------ccChHHHHHHHHHHHHHHHHHHHH-C--------CC--eEEEEeCccccCCCCC
Q 013226 180 VDQIYHLACPASPVH-Y---------KFNPVKTIKTNVVGTLNMLGLAKR-V--------GA--RFLLTSTSEVYGDPLQ 238 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~-~---------~~~~~~~~~~Nv~gt~~ll~aa~~-~--------g~--r~v~~SS~~v~g~~~~ 238 (447)
.|..+||||+..... + -++....+++|+.||.|+++.... . |- -+|.+.|.+.|.....
T Consensus 84 ld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~g 163 (260)
T KOG1199|consen 84 LDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTG 163 (260)
T ss_pred eeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCccc
Confidence 999999999753211 1 123456789999999999986421 1 12 3777778777743222
Q ss_pred CCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCC
Q 013226 239 HPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPR 292 (447)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~ 292 (447)
...|+.||...-.+..-+++.. ||++..|-||.+-.|-
T Consensus 164 ----------------qaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpl 204 (260)
T KOG1199|consen 164 ----------------QAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPL 204 (260)
T ss_pred ----------------hhhhhcccCceEeeechhhhhcccCceEEEeecccccCChh
Confidence 2789999998877666665543 8999999998776654
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-10 Score=103.53 Aligned_cols=200 Identities=15% Similarity=0.081 Sum_probs=127.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEE--ecCCCCCccccccccCCCceEEEecccccccc------------cC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVV--DNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL------------LE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l--~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------------~~ 179 (447)
.++.+||||+|.+||..++..+.+++.+.... .|...+ .+.+..... .......+|+++... .+
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~-~~~L~v~~g-d~~v~~~g~~~e~~~l~al~e~~r~k~gk 82 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE-LEGLKVAYG-DDFVHVVGDITEEQLLGALREAPRKKGGK 82 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc-ccceEEEec-CCcceechHHHHHHHHHHHHhhhhhcCCc
Confidence 45679999999999999999999988754443 333222 222221112 344455566554421 24
Q ss_pred CCEEEEeccCCCCCCcc----c---ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcC
Q 013226 180 VDQIYHLACPASPVHYK----F---NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~---~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
-|+||||||...+...- . .....|+.|+.....+...+.+ .. .-+|++||.+.-
T Consensus 83 r~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav------------- 149 (253)
T KOG1204|consen 83 RDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV------------- 149 (253)
T ss_pred eeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh-------------
Confidence 79999999976543211 1 2456899999998887776543 32 269999997732
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh-h-CCcEEEEeeccccCCCCccC-CCc-hH---HHHHHHHHhCCCeEEecC
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG-L-GIEARIARIFNTYGPRMCID-DGR-VV---SNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~-~i~~~ivRp~~i~Gp~~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~ 319 (447)
.|+.....||.+|++-+.+++.++.| . ++++..++||.+-.+-+-.. ++. +- -.++......
T Consensus 150 ---~p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~~-------- 218 (253)
T KOG1204|consen 150 ---RPFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKES-------- 218 (253)
T ss_pred ---ccccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHhc--------
Confidence 45666689999999999999999754 3 89999999988876532211 111 11 1122222222
Q ss_pred CCeeEccccHHHHHHHHHHHHcCC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
-..+...+.++.+..++++.
T Consensus 219 ----~~ll~~~~~a~~l~~L~e~~ 238 (253)
T KOG1204|consen 219 ----GQLLDPQVTAKVLAKLLEKG 238 (253)
T ss_pred ----CCcCChhhHHHHHHHHHHhc
Confidence 13455567788888888765
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-08 Score=96.03 Aligned_cols=170 Identities=14% Similarity=0.053 Sum_probs=113.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCC-ccccccccCCCceEEEec-c--cccccccCCCEEEEe
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGK-KDNLIHHFGNPRFELIRH-D--VVEPILLEVDQIYHL 186 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~-~~~~~~~~~~~~v~~~~~-D--~~~~~~~~~d~Vih~ 186 (447)
.++++|.|+|++|.||..++..|+.++ .+++++|+..... ..++.+... ...+... | ...+++.++|+||++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~--~~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDT--PAKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCc--CceEEEecCCCchHHHhCCCCEEEEC
Confidence 477899999999999999999998665 5899999821111 112222111 2222221 1 114678899999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCC--CCCCCCCCcCCCCCCCCCCChHHHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDP--LQHPQAETYWGNVNPIGVRSCYDEGKR 263 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~--~~~~~~e~~~~~~~~~~~~~~Y~~sK~ 263 (447)
||.... ...+..+.+..|+..+.++++++++++. ++|+++|-.+-.-. ....+.+. ..+.+...||.+-+
T Consensus 84 aG~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~-----sg~p~~~viG~g~L 156 (321)
T PTZ00325 84 AGVPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKA-----GVYDPRKLFGVTTL 156 (321)
T ss_pred CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhc-----cCCChhheeechhH
Confidence 996432 2235677899999999999999999998 99999997642210 00000111 33445566777655
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCC
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPR 292 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~ 292 (447)
-.-++-..+++..++....|+ +.|+|..
T Consensus 157 Ds~R~r~~la~~l~v~~~~V~-~~VlGeH 184 (321)
T PTZ00325 157 DVVRARKFVAEALGMNPYDVN-VPVVGGH 184 (321)
T ss_pred HHHHHHHHHHHHhCcChhheE-EEEEeec
Confidence 666666667788899888888 7788865
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-08 Score=87.18 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=75.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++++++||||+|+||..++..|+++|++|++++|+.+... .....+ ....+.++..|+.+.. +
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQ-ATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 357899999999999999999999999999999998643221 111111 1234667788886542 2
Q ss_pred cCCCEEEEeccCCCCCC-ccc-ChHHHHHHHHHHHH----HHHHHHHHCC-------C-eEEEEeCccc
Q 013226 178 LEVDQIYHLACPASPVH-YKF-NPVKTIKTNVVGTL----NMLGLAKRVG-------A-RFLLTSTSEV 232 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~-~~~-~~~~~~~~Nv~gt~----~ll~aa~~~g-------~-r~v~~SS~~v 232 (447)
.++|++|||||...... +.. .......+|+.++. .+....++.+ . ||..+||.+.
T Consensus 92 G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 92 SRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred CCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 46999999999754322 222 21122244455443 3333333332 2 7888888763
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=89.97 Aligned_cols=170 Identities=11% Similarity=0.006 Sum_probs=113.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc--ccccccCCCceEE-EecccccccccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD--NLIHHFGNPRFEL-IRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~--~~~~~~~~~~v~~-~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.++|.|+|++|.||..++..|+.++. +++++|+.. ...+ ++.+......+.- ...|...+++.++|+|||+||.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 35899999999999999999987664 899999865 1111 1111111111111 1222234578899999999996
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
... ...+..+.+..|...+.++.+.+++++. ++|+++|--+=+. ...+... ......+.+...||.++.-.+++
T Consensus 97 ~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~--~~i~t~~-~~~~s~~p~~~viG~~~LDs~Rl 171 (323)
T PLN00106 97 PRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNST--VPIAAEV-LKKAGVYDPKKLFGVTTLDVVRA 171 (323)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcccc--HHHHHHH-HHHcCCCCcceEEEEecchHHHH
Confidence 432 2345677899999999999999999998 8888887432100 0001100 01113455567899999889999
Q ss_pred HHHHHhhhCCcEEEEeeccccCC
Q 013226 269 TMDYHRGLGIEARIARIFNTYGP 291 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp 291 (447)
-..+++..+++...|+- .|+|.
T Consensus 172 ~~~lA~~lgv~~~~V~~-~ViGe 193 (323)
T PLN00106 172 NTFVAEKKGLDPADVDV-PVVGG 193 (323)
T ss_pred HHHHHHHhCCChhheEE-EEEEe
Confidence 99999999999888865 44553
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-07 Score=68.39 Aligned_cols=58 Identities=22% Similarity=0.461 Sum_probs=40.1
Q ss_pred HHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHH
Q 013226 364 VVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 364 ~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~ 421 (447)
+++++.|.+.++.+.|...+++...+.|++|++++|||+|+++++++++++++|++++
T Consensus 1 A~e~vtG~~i~~~~~~rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~n 58 (62)
T PF13950_consen 1 AFEKVTGKKIPVEYAPRRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKN 58 (62)
T ss_dssp HHHHHHTS---EEEE---TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHS
T ss_pred CcHHHHCCCCCceECCCCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHC
Confidence 4678999999999999999999999999999999999999999999999999999876
|
... |
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-07 Score=83.98 Aligned_cols=169 Identities=16% Similarity=0.139 Sum_probs=110.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-----eEEEEecCCCCCccccc---cccC--CCceEEEecccccc--------
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-----SVIVVDNYFTGKKDNLI---HHFG--NPRFELIRHDVVEP-------- 175 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-----~V~~l~r~~~~~~~~~~---~~~~--~~~v~~~~~D~~~~-------- 175 (447)
..|.++|||++++||-.|+.+|++... ++++.+|..++.++... .... ..+++++..|+.+-
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~ 81 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK 81 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence 346799999999999999999999754 45666776554432221 1122 34788999998553
Q ss_pred ----cccCCCEEEEeccCCCCCCc-------------------------------ccChHHHHHHHHHHHHHHHHHHHH-
Q 013226 176 ----ILLEVDQIYHLACPASPVHY-------------------------------KFNPVKTIKTNVVGTLNMLGLAKR- 219 (447)
Q Consensus 176 ----~~~~~d~Vih~Ag~~~~~~~-------------------------------~~~~~~~~~~Nv~gt~~ll~aa~~- 219 (447)
.+...|.|+-|||+...... .+.-.++++.||.|...+++....
T Consensus 82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl 161 (341)
T KOG1478|consen 82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL 161 (341)
T ss_pred HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence 23458999999997643211 112345789999998888776543
Q ss_pred --CC-C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeecccc
Q 013226 220 --VG-A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTY 289 (447)
Q Consensus 220 --~g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~ 289 (447)
++ . ++|++||...-- ..++=+ +........+|..||...+.+-.+..+. .|+.-.++.||...
T Consensus 162 l~~~~~~~lvwtSS~~a~k----k~lsle---D~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~t 231 (341)
T KOG1478|consen 162 LCHSDNPQLVWTSSRMARK----KNLSLE---DFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFT 231 (341)
T ss_pred hhcCCCCeEEEEeeccccc----ccCCHH---HHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceee
Confidence 22 3 899999976411 111111 1123333467999999999887666543 36777788887644
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-07 Score=83.08 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=68.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEecccccccc------------cCCCE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPIL------------LEVDQ 182 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~------------~~~d~ 182 (447)
|+++||||+||+|. +++.|+++|++|++++|+.... +.+.... ...++.++.+|+.++.. ..+|.
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~-~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~ 78 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKL-ENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDL 78 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHH-HHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeE
Confidence 57999999987775 9999999999999998864322 1111111 12367788889877531 34677
Q ss_pred EEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCe-----EEEEeCcc
Q 013226 183 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-----FLLTSTSE 231 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r-----~v~~SS~~ 231 (447)
+|+. +++.++.++..+|++.|++ |+++=.+.
T Consensus 79 lv~~------------------vh~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 79 AVAW------------------IHSSAKDALSVVCRELDGSSETYRLFHVLGSA 114 (177)
T ss_pred EEEe------------------ccccchhhHHHHHHHHccCCCCceEEEEeCCc
Confidence 7765 4455788999999998865 88876543
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.2e-06 Score=83.52 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=114.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEecCCCC--Ccc---cccccc-C-CCceEEEecccccccccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-------SVIVVDNYFTG--KKD---NLIHHF-G-NPRFELIRHDVVEPILLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-------~V~~l~r~~~~--~~~---~~~~~~-~-~~~v~~~~~D~~~~~~~~~ 180 (447)
+++|.|+|++|.||..++..|+..|. ++.++|+.... ... ++.+.. . ...+.+. . -....+.++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~-~~~~~~~da 79 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-D-DPNVAFKDA 79 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-c-CcHHHhCCC
Confidence 46899999999999999999998875 78888884332 111 111111 0 0123332 2 224568899
Q ss_pred CEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C--eEEEEeCcc---ccCCCCCCCCCCCcCCCCCC-CC
Q 013226 181 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTSTSE---VYGDPLQHPQAETYWGNVNP-IG 253 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~--r~v~~SS~~---v~g~~~~~~~~e~~~~~~~~-~~ 253 (447)
|+||.+||.... ...+..+.+..|+.-.+.+...+++++ . .+|.+|--. +|--. ...+ +.
T Consensus 80 DivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~-----------k~sg~~p 146 (322)
T cd01338 80 DWALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAM-----------KNAPDIP 146 (322)
T ss_pred CEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHH-----------HHcCCCC
Confidence 999999996432 234566789999999999999998876 3 566665311 11000 0022 44
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCC
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRM 293 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~ 293 (447)
+...|+.+++..+++...+++.++++...+|..+|||+..
T Consensus 147 ~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG 186 (322)
T cd01338 147 PDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS 186 (322)
T ss_pred hHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc
Confidence 4568999999999999999999999999999999999873
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.2e-06 Score=82.18 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=96.4
Q ss_pred CCCCeEEEEcCCChhHHH--HHHHHHhCCCeEEEEecCCCCCcc-----------ccccccC--CCceEEEeccccccc-
Q 013226 113 RKSLRILVTGGAGFVGSH--LVDRLMDRGDSVIVVDNYFTGKKD-----------NLIHHFG--NPRFELIRHDVVEPI- 176 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~--l~~~L~~~G~~V~~l~r~~~~~~~-----------~~~~~~~--~~~v~~~~~D~~~~~- 176 (447)
..+|++||||+++++|.+ +++.| +.|++|+++++....... ....... ...+..+.+|+.++.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 467899999999999999 89999 999999888753221111 1111111 124567889997753
Q ss_pred -----------ccCCCEEEEeccCCCCCC-----------------ccc------------------ChHH-HHHHHHHH
Q 013226 177 -----------LLEVDQIYHLACPASPVH-----------------YKF------------------NPVK-TIKTNVVG 209 (447)
Q Consensus 177 -----------~~~~d~Vih~Ag~~~~~~-----------------~~~------------------~~~~-~~~~Nv~g 209 (447)
+.++|+|||++|...... ... ..++ ..-+.+.|
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vMg 197 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVMG 197 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhhc
Confidence 346999999999753322 100 0001 11233333
Q ss_pred HHH---HHHHHHHC-----CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CC
Q 013226 210 TLN---MLGLAKRV-----GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GI 278 (447)
Q Consensus 210 t~~---ll~aa~~~-----g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i 278 (447)
... =+++.... |.++|-+|..+ ...- -|.-....-|.+|+..|..++.++.+. |+
T Consensus 198 gedw~~Wi~al~~a~lla~g~~~va~TY~G---~~~t-----------~p~Y~~g~mG~AKa~LE~~~r~La~~L~~~gi 263 (398)
T PRK13656 198 GEDWELWIDALDEAGVLAEGAKTVAYSYIG---PELT-----------HPIYWDGTIGKAKKDLDRTALALNEKLAAKGG 263 (398)
T ss_pred cchHHHHHHHHHhcccccCCcEEEEEecCC---ccee-----------ecccCCchHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 311 11222222 34666666543 1000 111111457999999999999988654 78
Q ss_pred cEEEEeeccccC
Q 013226 279 EARIARIFNTYG 290 (447)
Q Consensus 279 ~~~ivRp~~i~G 290 (447)
++.++-++.+-.
T Consensus 264 ran~i~~g~~~T 275 (398)
T PRK13656 264 DAYVSVLKAVVT 275 (398)
T ss_pred EEEEEecCcccc
Confidence 888888765544
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.7e-06 Score=83.12 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=73.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-------CeEEEEecCCCCC-ccccccccCC----CceEEEecccccccccCCCE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRG-------DSVIVVDNYFTGK-KDNLIHHFGN----PRFELIRHDVVEPILLEVDQ 182 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G-------~~V~~l~r~~~~~-~~~~~~~~~~----~~v~~~~~D~~~~~~~~~d~ 182 (447)
+.+|+||||+|+||.+++..|+..+ .+|+++|+..... .+.....+.. ...+....+-..+++.++|+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 3469999999999999999999854 5899999854311 1111000000 00011111222356789999
Q ss_pred EEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C--eEEEEeC
Q 013226 183 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTST 229 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~--r~v~~SS 229 (447)
|||+||.... ...+..+.++.|+.-...+...++++. . .+|.+|.
T Consensus 82 VI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 82 AILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred EEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999996532 234567899999999999998888873 2 5666664
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=80.25 Aligned_cols=76 Identities=24% Similarity=0.483 Sum_probs=51.2
Q ss_pred CCCCeEEEEcCC----------------ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEec--cccc
Q 013226 113 RKSLRILVTGGA----------------GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRH--DVVE 174 (447)
Q Consensus 113 ~~~~~ilVtGas----------------G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~--D~~~ 174 (447)
+.||+||||+|. ||+|.+|+++|+++|++|+++++.......... ....+..+.. |+.+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~---~~~~~~~V~s~~d~~~ 77 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDIN---NQLELHPFEGIIDLQD 77 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccC---CceeEEEEecHHHHHH
Confidence 368999999886 999999999999999999999864321111111 0112333444 3332
Q ss_pred ---ccc--cCCCEEEEeccCCC
Q 013226 175 ---PIL--LEVDQIYHLACPAS 191 (447)
Q Consensus 175 ---~~~--~~~d~Vih~Ag~~~ 191 (447)
..+ .++|+|||+||+.+
T Consensus 78 ~l~~~~~~~~~D~VIH~AAvsD 99 (229)
T PRK09620 78 KMKSIITHEKVDAVIMAAAGSD 99 (229)
T ss_pred HHHHHhcccCCCEEEECccccc
Confidence 233 35899999999854
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-05 Score=76.25 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=75.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHh---CCCeEEEEecCCCCCccccccccCCC-ceEEEe--cccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMD---RGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIR--HDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~---~G~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~--~D~~~~~~~~~d~Vih~Ag~ 189 (447)
|+|+|+||+|.+|.+++..|.. .++++.++++... ............ ...+.. .+-..+.+.++|+||.++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 6899999999999999988854 3457888887532 211111111101 112211 22223567889999999996
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
... ...+..+.+..|.....++++++++++. ++|.+.|
T Consensus 80 ~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs 118 (312)
T PRK05086 80 ARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT 118 (312)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 432 2235667899999999999999999987 7777776
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.1e-06 Score=83.45 Aligned_cols=95 Identities=23% Similarity=0.313 Sum_probs=69.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEecc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLAC 188 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag 188 (447)
+|+|+|.|+ |+||+.++..|+++| .+|++.+|+......-.. . ...+++....|+.+. .+.+.|+|||++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~-~-~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAE-L-IGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-h-ccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 478999997 999999999999999 799999996443222111 1 112566777776554 5677899999986
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCc
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~ 230 (447)
+. .+ .+++++|.++|+.+|=+|=.
T Consensus 78 ~~--------------~~----~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 78 PF--------------VD----LTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred ch--------------hh----HHHHHHHHHhCCCEEEcccC
Confidence 32 11 27899999999888866643
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00027 Score=63.82 Aligned_cols=215 Identities=12% Similarity=0.031 Sum_probs=124.1
Q ss_pred cCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCC-ceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~------------ 176 (447)
.+.||++||+|-. ..|+..|++.|.++|+++......+ ..+.++.+..... ..-++++|+.+..
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~ 81 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKK 81 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHh
Confidence 4689999999965 6899999999999999988876542 1222222222211 2346889997663
Q ss_pred ccCCCEEEEeccCCCCCCcccC----hH----HHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCc
Q 013226 177 LLEVDQIYHLACPASPVHYKFN----PV----KTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~~----~~----~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
..++|.|||+.|.........+ .. ..+++-......+.++++.. |..+|-++=.. . +
T Consensus 82 ~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlg---s--~------- 149 (259)
T COG0623 82 WGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLG---S--E------- 149 (259)
T ss_pred hCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEecc---c--e-------
Confidence 2459999999997653222222 12 23344444455556665542 33444333211 0 0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
......+.-+..|+..|.-++-++.+. |+++..|-.|.|=.-.. ..-..+..++...-...|+.
T Consensus 150 ----r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAa--sgI~~f~~~l~~~e~~aPl~------- 216 (259)
T COG0623 150 ----RVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAA--SGIGDFRKMLKENEANAPLR------- 216 (259)
T ss_pred ----eecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHh--hccccHHHHHHHHHhhCCcc-------
Confidence 112223678999999999999887654 78888877744321000 00011234444333333322
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
.-+..+|+....++++.+= ..| +.++.+|-
T Consensus 217 --r~vt~eeVG~tA~fLlSdLssgiTGei~yVD~G~ 250 (259)
T COG0623 217 --RNVTIEEVGNTAAFLLSDLSSGITGEIIYVDSGY 250 (259)
T ss_pred --CCCCHHHhhhhHHHHhcchhcccccceEEEcCCc
Confidence 2456788888888877653 334 55555443
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.3e-05 Score=74.33 Aligned_cols=70 Identities=19% Similarity=0.379 Sum_probs=46.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccc-------ccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE-------PILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-------~~~~~~d~Vih~Ag 188 (447)
-+++=-.+|||+|.+|+++|+++|++|++++|....... ...++.++..+..+ ..+.++|+||||||
T Consensus 17 VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~~------~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AA 90 (229)
T PRK06732 17 VRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKPE------PHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMA 90 (229)
T ss_pred ceeecCccchHHHHHHHHHHHhCCCEEEEEECcccccCC------CCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCc
Confidence 344444678899999999999999999999875321110 11244554443322 23457999999999
Q ss_pred CCC
Q 013226 189 PAS 191 (447)
Q Consensus 189 ~~~ 191 (447)
+..
T Consensus 91 vsd 93 (229)
T PRK06732 91 VSD 93 (229)
T ss_pred cCC
Confidence 764
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.97 E-value=4e-05 Score=65.49 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=75.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---ccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
|+|.|+|++|.+|.+++..|...+. +++++|+....... ++.+.............-..+++.++|+||-+||..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 6899999999999999999999874 89999986432221 111111111122222224455688999999999964
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEE
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 227 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~ 227 (447)
. ....+..+.++.|..-.+.+.+.+.+++. .++.+
T Consensus 81 ~--~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivv 117 (141)
T PF00056_consen 81 R--KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVV 117 (141)
T ss_dssp S--STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-
T ss_pred c--cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEe
Confidence 3 22345677889999999999999988875 44444
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00017 Score=70.49 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=73.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-------eEEEEecCC--CCCccc---ccccc--CCCceEEEecccccccccCCCE
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-------SVIVVDNYF--TGKKDN---LIHHF--GNPRFELIRHDVVEPILLEVDQ 182 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-------~V~~l~r~~--~~~~~~---~~~~~--~~~~v~~~~~D~~~~~~~~~d~ 182 (447)
+|.|+||+|.||..++..|+.+|. +++++|+.. +..... +.+.. ....+.+ . +-..+.+.++|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i-~-~~~~~~~~~aDi 79 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI-T-TDPEEAFKDVDV 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE-e-cChHHHhCCCCE
Confidence 699999999999999999998653 488998865 221111 11110 0011221 1 223467788999
Q ss_pred EEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C--eEEEEe
Q 013226 183 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTS 228 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~--r~v~~S 228 (447)
|||+||... ....+..+.+..|+.-.+.+...+++++ . .++.+|
T Consensus 80 VVitAG~~~--~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 80 AILVGAFPR--KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred EEEeCCCCC--CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 999999643 2234567789999999999999998884 4 555554
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.5e-05 Score=75.27 Aligned_cols=71 Identities=24% Similarity=0.236 Sum_probs=51.0
Q ss_pred cCCCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccc-
Q 013226 112 QRKSLRILVTGG----------------AGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE- 174 (447)
Q Consensus 112 ~~~~~~ilVtGa----------------sG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~- 174 (447)
.++||+|+|||| +|.+|.++++.|.++|++|+++++..... . ...+.. .|+.+
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~---~-----~~~~~~--~dv~~~ 254 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLP---T-----PAGVKR--IDVESA 254 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcccc---C-----CCCcEE--EccCCH
Confidence 468999999999 88899999999999999999998753211 0 011222 23322
Q ss_pred --------ccccCCCEEEEeccCCCC
Q 013226 175 --------PILLEVDQIYHLACPASP 192 (447)
Q Consensus 175 --------~~~~~~d~Vih~Ag~~~~ 192 (447)
..+..+|++|||||+...
T Consensus 255 ~~~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 255 QEMLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred HHHHHHHHHhcCCCCEEEEccccccc
Confidence 234569999999998643
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00011 Score=69.13 Aligned_cols=92 Identities=17% Similarity=0.249 Sum_probs=59.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceE--EEecccccccc--cCCCEEEEeccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFE--LIRHDVVEPIL--LEVDQIYHLACPAS 191 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~--~~~~D~~~~~~--~~~d~Vih~Ag~~~ 191 (447)
|+|||+||||. |+.|++.|.++|++|++..+....... +... +...+. .++.+-....+ .++|+||+.+.+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~-~~~~-g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHP-- 75 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHL-YPIH-QALTVHTGALDPQELREFLKRHSIDILVDATHP-- 75 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccc-cccc-CCceEEECCCCHHHHHHHHHhcCCCEEEEcCCH--
Confidence 68999999999 999999999999999999886543222 1111 111111 11111121122 359999998742
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEE
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v 225 (447)
--...+.++.++|++.|+.++
T Consensus 76 -------------fA~~is~~a~~a~~~~~ipyl 96 (256)
T TIGR00715 76 -------------FAAQITTNATAVCKELGIPYV 96 (256)
T ss_pred -------------HHHHHHHHHHHHHHHhCCcEE
Confidence 122456788999999997444
|
This enzyme was found to be a monomer by gel filtration. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.4e-05 Score=68.48 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=50.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEecccc-----cccccCCCEEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVV-----EPILLEVDQIYH 185 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~-----~~~~~~~d~Vih 185 (447)
.+++++++|+||+|.+|+.++..|++.|++|++++|+.... +.+...+. .........|.. ...+.++|+||+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERA-QKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 45788999999999999999999999999999998864321 22211111 011222233332 245678999998
Q ss_pred ecc
Q 013226 186 LAC 188 (447)
Q Consensus 186 ~Ag 188 (447)
+..
T Consensus 104 at~ 106 (194)
T cd01078 104 AGA 106 (194)
T ss_pred CCC
Confidence 764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00091 Score=65.07 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=74.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCC--CCCcccc---cccc--CCCceEEEe-cccccccccCCCEEEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYF--TGKKDNL---IHHF--GNPRFELIR-HDVVEPILLEVDQIYH 185 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~--~~~~~~~---~~~~--~~~~v~~~~-~D~~~~~~~~~d~Vih 185 (447)
|+|.|+|++|.+|..++..|+..|. +|+++++.. +...... .+.. ......+.- .| ...+.++|+||-
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d--~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD--LSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC--HHHhCCCCEEEE
Confidence 6899999999999999999999987 599999843 1111111 1110 011122222 23 235889999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCc
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTS 230 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~ 230 (447)
++|... ....+..+.+..|+.-...+.+.+.+.+. .+|.+++.
T Consensus 79 tag~p~--~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 79 TAGVPR--KEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred ecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 998532 22233467788999999999998887753 67777753
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00013 Score=75.00 Aligned_cols=76 Identities=24% Similarity=0.264 Sum_probs=56.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+++|+|+|+|+++ +|..+++.|+++|++|++.++......++....+....+.++..|..+....++|+||+++|.
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 4678999999777 999999999999999999988542211111111223356778888877667789999999985
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00064 Score=66.44 Aligned_cols=162 Identities=11% Similarity=0.078 Sum_probs=93.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-------eEEEEecCCCCC-ccccccccCCCc----eEEEecccccccccCCCEEE
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-------SVIVVDNYFTGK-KDNLIHHFGNPR----FELIRHDVVEPILLEVDQIY 184 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-------~V~~l~r~~~~~-~~~~~~~~~~~~----v~~~~~D~~~~~~~~~d~Vi 184 (447)
+|.|+|++|.||..++..|...+. +++++|+.+... .+.....+.... ...+..+-..+.+.++|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 589999999999999999987543 588998854321 111110010000 01111111235678899999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C--eEEEEeCcc---cc--CCCCCCCCCCCcCCCCCCCCCCC
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTSTSE---VY--GDPLQHPQAETYWGNVNPIGVRS 256 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~--r~v~~SS~~---v~--g~~~~~~~~e~~~~~~~~~~~~~ 256 (447)
|+||.... ...+..+.+..|+.-.+.+....+++. . .++.+|--. +| -..... .+. ..
T Consensus 81 itAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~----------~~~--~v 146 (324)
T TIGR01758 81 LVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPS----------IPP--KN 146 (324)
T ss_pred EcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCC----------CCc--ce
Confidence 99996432 223467789999999999999998884 4 566555311 11 000000 000 01
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCC
Q 013226 257 CYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292 (447)
Q Consensus 257 ~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~ 292 (447)
.=+.+....-++-..+++..+++...++-..|+|..
T Consensus 147 ig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH 182 (324)
T TIGR01758 147 FSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNH 182 (324)
T ss_pred EEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECC
Confidence 111222333344444566678888888777777754
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00013 Score=67.65 Aligned_cols=87 Identities=13% Similarity=0.206 Sum_probs=51.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-------cccCCCEEEEeccC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-------ILLEVDQIYHLACP 189 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-------~~~~~d~Vih~Ag~ 189 (447)
+++=-.++|+||.+++++|+++|++|+++++..... . .....+++.+.+..+. .+.++|++|||||+
T Consensus 17 R~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~l~-~-----~~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv 90 (227)
T TIGR02114 17 RSITNHSTGHLGKIITETFLSAGHEVTLVTTKRALK-P-----EPHPNLSIREIETTKDLLITLKELVQEHDILIHSMAV 90 (227)
T ss_pred eeecCCcccHHHHHHHHHHHHCCCEEEEEcChhhcc-c-----ccCCcceeecHHHHHHHHHHHHHHcCCCCEEEECCEe
Confidence 444445589999999999999999999987631110 0 0012344444333222 23468999999997
Q ss_pred CCCCCccc-ChHHHHHHHHHH
Q 013226 190 ASPVHYKF-NPVKTIKTNVVG 209 (447)
Q Consensus 190 ~~~~~~~~-~~~~~~~~Nv~g 209 (447)
........ +.++..+++..+
T Consensus 91 ~d~~~~~~~s~e~~~~~~~~~ 111 (227)
T TIGR02114 91 SDYTPVYMTDLEQVQASDNLN 111 (227)
T ss_pred ccccchhhCCHHHHhhhcchh
Confidence 54332222 233444444433
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.61 E-value=9.5e-05 Score=74.42 Aligned_cols=91 Identities=30% Similarity=0.355 Sum_probs=61.1
Q ss_pred EEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccCC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 190 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~~ 190 (447)
|+|.|+ |++|+.+++.|++++. +|++.+|+..... .+.......++.....|+.+. .+.++|+||||+++.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAE-RLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHH-HHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHH-HHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 789999 9999999999999974 8999998644322 222222445889999998765 356899999999743
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~S 228 (447)
....++++|.++|+++|-+|
T Consensus 79 ------------------~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 79 ------------------FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp ------------------GHHHHHHHHHHHT-EEEESS
T ss_pred ------------------hhHHHHHHHHHhCCCeeccc
Confidence 11257888888888777643
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.8e-05 Score=63.26 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=59.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~-V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
.+++++++|.| +|+.|+.++..|.+.|.+ |+++.|+.. +.+.+...+....+.+...+-....+.++|+||++.+..
T Consensus 9 ~l~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt~~-ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 9 DLKGKRVLVIG-AGGAARAVAAALAALGAKEITIVNRTPE-RAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG 86 (135)
T ss_dssp TGTTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESSHH-HHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred CcCCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence 56889999999 599999999999999985 999988643 233444444455678888887777788999999997643
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.8e-05 Score=73.13 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=49.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhC-C-CeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDR-G-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~-G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.+++++|+||||+|+||+.++++|+++ | .++++++|... +...+...+.. .++. | .+..+.++|+|||+++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~-rl~~La~el~~--~~i~--~-l~~~l~~aDiVv~~ts~ 225 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE-RLQELQAELGG--GKIL--S-LEEALPEADIVVWVASM 225 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH-HHHHHHHHhcc--ccHH--h-HHHHHccCCEEEECCcC
Confidence 568899999999999999999999865 5 58888888533 22222211111 1111 1 33567789999999985
Q ss_pred C
Q 013226 190 A 190 (447)
Q Consensus 190 ~ 190 (447)
.
T Consensus 226 ~ 226 (340)
T PRK14982 226 P 226 (340)
T ss_pred C
Confidence 4
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.55 E-value=5.4e-05 Score=75.56 Aligned_cols=105 Identities=15% Similarity=0.221 Sum_probs=64.5
Q ss_pred cCCCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccc-c
Q 013226 112 QRKSLRILVTGG----------------AGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV-E 174 (447)
Q Consensus 112 ~~~~~~ilVtGa----------------sG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~-~ 174 (447)
.++|++|+|||| ||.+|.++++.|.++|++|+++.+........ ....+++...+-. +
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~-----~~~~~~v~~~~~~~~ 256 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPP-----GVKSIKVSTAEEMLE 256 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCC-----CcEEEEeccHHHHHH
Confidence 478999999999 35699999999999999999988653221110 0012222222111 2
Q ss_pred ----ccccCCCEEEEeccCCCCCCcccC-----h-HHHHHHHHHHHHHHHHHHHHCC
Q 013226 175 ----PILLEVDQIYHLACPASPVHYKFN-----P-VKTIKTNVVGTLNMLGLAKRVG 221 (447)
Q Consensus 175 ----~~~~~~d~Vih~Ag~~~~~~~~~~-----~-~~~~~~Nv~gt~~ll~aa~~~g 221 (447)
....++|++||+||+.+....+.. . .+.+..|+.-+-.+++..++..
T Consensus 257 ~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 257 AALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred HHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 223468999999998754332111 1 1223456666777777766543
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=63.73 Aligned_cols=165 Identities=13% Similarity=0.037 Sum_probs=96.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---ccccccCCCceEEEe--c-ccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHFGNPRFELIR--H-DVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~--~-D~~~~~~~~~d~Vih~A 187 (447)
|+|.|+|++|.+|.+++..|+.+|. +++++|.. .... ++.+.. ....+.. . |-..+.+.++|+||-+|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~--~~~~i~~~~~~~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHIN--TPAKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCC--CcceEEEecCCCchHHhcCCCCEEEEeC
Confidence 5899999999999999999998874 88999885 2111 111111 1122221 2 22246788999999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCcc-ccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSE-VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRT 264 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~ 264 (447)
|... ....+..+.++.|..-...+.+..++++. .++.+|--. +... .+.+..|. .....+....|..-.-
T Consensus 77 G~~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~----i~t~~~~~-~s~~p~~rviG~~~LD 149 (310)
T cd01337 77 GVPR--KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVP----IAAEVLKK-AGVYDPKRLFGVTTLD 149 (310)
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHH----HHHHHHHH-hcCCCHHHEEeeechH
Confidence 9632 22345677899999999999999988875 555555322 1000 00000000 0011111112222233
Q ss_pred HHHHHHHHHhhhCCcEEEEeeccccCCC
Q 013226 265 AETLTMDYHRGLGIEARIARIFNTYGPR 292 (447)
Q Consensus 265 ~E~~~~~~~~~~~i~~~ivRp~~i~Gp~ 292 (447)
.-++-..+++..+++..-++ +.++|..
T Consensus 150 s~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 150 VVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred HHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 34455555667788777777 6777765
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0023 Score=65.46 Aligned_cols=223 Identities=17% Similarity=0.243 Sum_probs=129.6
Q ss_pred CccccCCCCeEEEEcCC-ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-----cC-C--------CceEEEeccc
Q 013226 108 PLGLQRKSLRILVTGGA-GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-----FG-N--------PRFELIRHDV 172 (447)
Q Consensus 108 ~~~~~~~~~~ilVtGas-G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-----~~-~--------~~v~~~~~D~ 172 (447)
|-+....++.++||||+ |.||..++..|+.-|.+|++...+......+..+. .. . ....+-+.|.
T Consensus 389 p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdA 468 (866)
T COG4982 389 PNGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDA 468 (866)
T ss_pred CCCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHH
Confidence 33455678899999998 89999999999999999999865433222111110 00 0 1111222221
Q ss_pred ccc------------------cccCCCEEEEeccCCCCCCccc-C--hHHHHHHHHHHHHHHHHHHHHCC--------Ce
Q 013226 173 VEP------------------ILLEVDQIYHLACPASPVHYKF-N--PVKTIKTNVVGTLNMLGLAKRVG--------AR 223 (447)
Q Consensus 173 ~~~------------------~~~~~d~Vih~Ag~~~~~~~~~-~--~~~~~~~Nv~gt~~ll~aa~~~g--------~r 223 (447)
+-. ....+|.+|-+|++.-...... . .+..+++-+....+++..+++.+ .+
T Consensus 469 lIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~h 548 (866)
T COG4982 469 LIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLH 548 (866)
T ss_pred HHHHhccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceE
Confidence 111 1123789999998754443322 1 22345666666777777766554 25
Q ss_pred EEEEeCcc--ccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhC----CcEEEEeeccccCCCCccCC
Q 013226 224 FLLTSTSE--VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG----IEARIARIFNTYGPRMCIDD 297 (447)
Q Consensus 224 ~v~~SS~~--v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~----i~~~ivRp~~i~Gp~~~~~~ 297 (447)
+|+-.|-+ .||. ...|+.+|...+.++..|..+.+ +.++-.++|++-|.+.-..
T Consensus 549 VVLPgSPNrG~FGg-------------------DGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGLMg~- 608 (866)
T COG4982 549 VVLPGSPNRGMFGG-------------------DGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGLMGH- 608 (866)
T ss_pred EEecCCCCCCccCC-------------------CcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccccCC-
Confidence 77766654 2322 26799999999999999876542 3455556677766653221
Q ss_pred CchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC-------CCcEEecCCC---ccCHHHHHHH
Q 013226 298 GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH-------VGPFNLGNPG---EFTMLELAEV 364 (447)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~-------~g~~~i~~~~---~~s~~el~~~ 364 (447)
++.+........+..|. .+.+|..++-++..+. .=.+++++|- +..+.+++..
T Consensus 609 ----Ndiiv~aiEk~GV~tyS----------~~EmA~~LLgL~saev~e~a~~~PI~aDLtGGL~~~~~~~a~~A~~ 671 (866)
T COG4982 609 ----NDIIVAAIEKAGVRTYS----------TDEMAFNLLGLASAEVVELAASSPITADLTGGLGEVPLLKAELAAL 671 (866)
T ss_pred ----cchhHHHHHHhCceecC----------HHHHHHHHHhhccHHHHHHHhcCCeEeeccCccccchhhHHHHHHH
Confidence 33444555554455443 2566666666655331 1156776653 3455555554
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0014 Score=63.98 Aligned_cols=111 Identities=17% Similarity=0.214 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccc---cccccCC-CceEEEecccccccccCCCEEEEe
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDN---LIHHFGN-PRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~---~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
..+++|.|+|+ |.||..++..|+..|. ++.++|+..+..... +.+.... ..+.+...| .+.+.++|+||.+
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~--~~~~~~adivIit 80 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGD--YSDCKDADLVVIT 80 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCC--HHHhCCCCEEEEe
Confidence 35679999997 9999999999999887 899999865433221 1111110 233444333 2457899999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
||... ....+..+.+..|..-.+.+++.+++++. .++.+|
T Consensus 81 ag~~~--k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 81 AGAPQ--KPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred cCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 99643 22345667889999999999999988764 566555
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00088 Score=55.62 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=57.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccC----CCceEEEecccccccccCCCEEEEeccCCC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFG----NPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
+|.|+||||++|+.|++.|.+.-. +++.+..+.......+..... ..++.+.+ .....+.++|+||.|.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dvvf~a~~~-- 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--ADPEELSDVDVVFLALPH-- 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TSGHHHTTESEEEE-SCH--
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cchhHhhcCCEEEecCch--
Confidence 589999999999999999999643 555544432322222221111 11233333 333445789999988641
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
.....+...+.+.|+++|=.|+..
T Consensus 77 ----------------~~~~~~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 ----------------GASKELAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp ----------------HHHHHHHHHHHHTTSEEEESSSTT
T ss_pred ----------------hHHHHHHHHHhhCCcEEEeCCHHH
Confidence 122355666677888888777765
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=63.94 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=74.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCcccccc---cc--CCCceEEEecccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKDNLIH---HF--GNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~~~~~---~~--~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
++|.|.| +|.+|+.++..|+..| ++|+++++........... .. ..........| ...+.++|+||+++|
T Consensus 1 ~kI~IIG-aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~--~~~l~~aDIVIitag 77 (306)
T cd05291 1 RKVVIIG-AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGD--YSDCKDADIVVITAG 77 (306)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCC--HHHhCCCCEEEEccC
Confidence 4799999 5999999999999999 5899999975543222111 11 01122222222 234678999999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeC
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 229 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS 229 (447)
.... ...+..+.+..|..-.+.+.+.+++++. .++.+|-
T Consensus 78 ~~~~--~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 78 APQK--PGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 6432 2345567889999999999999988764 6666653
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.001 Score=65.51 Aligned_cols=94 Identities=20% Similarity=0.173 Sum_probs=60.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
+++|+|.||||++|++|++.|.++|| +++.+.+... ..+.+. +.. .+....|..+..+.++|+||.+++..
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~-~g~~l~--~~g--~~i~v~d~~~~~~~~vDvVf~A~g~g- 74 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARS-AGKELS--FKG--KELKVEDLTTFDFSGVDIALFSAGGS- 74 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcccc-CCCeee--eCC--ceeEEeeCCHHHHcCCCEEEECCChH-
Confidence 46899999999999999999999887 4577766422 222221 111 23333455545557899999887521
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
-+..+.....+.|+++|=.|+..
T Consensus 75 -----------------~s~~~~~~~~~~G~~VIDlS~~~ 97 (334)
T PRK14874 75 -----------------VSKKYAPKAAAAGAVVIDNSSAF 97 (334)
T ss_pred -----------------HHHHHHHHHHhCCCEEEECCchh
Confidence 12234555556777777777754
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0015 Score=65.17 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=63.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccC-CCceEEEec-ccccccccCCCEEEEeccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRH-DVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~-D~~~~~~~~~d~Vih~Ag~ 189 (447)
...|+|.|.||||++|++|++.|.++ +.+|..+.+.... .+.+..... ....+.... ++....+.++|+||-+.+.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~sa-G~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~ 114 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKA-GQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH 114 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhc-CCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence 35678999999999999999999998 5688888774222 111111100 000111111 1222235789999987641
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCC
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 235 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~ 235 (447)
.....++..+ +.|+++|-.|+...+.+
T Consensus 115 ------------------~~s~~i~~~~-~~g~~VIDlSs~fRl~~ 141 (381)
T PLN02968 115 ------------------GTTQEIIKAL-PKDLKIVDLSADFRLRD 141 (381)
T ss_pred ------------------HHHHHHHHHH-hCCCEEEEcCchhccCC
Confidence 1444566665 45779999999886543
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00062 Score=60.82 Aligned_cols=61 Identities=23% Similarity=0.327 Sum_probs=37.8
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-------cccCCCEEEEeccCCC
Q 013226 123 GAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-------ILLEVDQIYHLACPAS 191 (447)
Q Consensus 123 asG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-------~~~~~d~Vih~Ag~~~ 191 (447)
+||-.|.+|++.+.++|++|+.+.....-.. ...+..+..+..++ .+...|++||+|++.+
T Consensus 27 SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~--------p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 27 SSGKMGAALAEEAARRGAEVTLIHGPSSLPP--------PPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSD 94 (185)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEEE-TTS------------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEecCccccc--------cccceEEEecchhhhhhhhccccCcceeEEEecchhh
Confidence 4899999999999999999999987421110 23566666554333 3456899999999865
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0034 Score=60.93 Aligned_cols=108 Identities=15% Similarity=0.047 Sum_probs=73.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCc--cccccccCCCceEEEe--cc-cccccccCCCEEEEeccC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKK--DNLIHHFGNPRFELIR--HD-VVEPILLEVDQIYHLACP 189 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~--~~~~~~~~~~~v~~~~--~D-~~~~~~~~~d~Vih~Ag~ 189 (447)
+|.|+|++|.||..++..|+.++. +++++|+.. ... .++.+.. ....+.. .| ...+++.+.|+||-+||.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~DL~~~~--~~~~i~~~~~~~~~~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAADLSHIP--TAASVKGFSGEEGLENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEchhhcCC--cCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence 589999999999999999998875 788998864 111 1111111 1122221 12 224678899999999996
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeC
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 229 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS 229 (447)
... ...+..+.+..|..-.+.+.+..++++. .++.+|-
T Consensus 78 ~~~--~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 78 PRK--PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred CCC--CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 432 2345667889999999999999888875 4555553
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0033 Score=60.50 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=74.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccc---cccccCC--CceEEEecccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDN---LIHHFGN--PRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~---~~~~~~~--~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
++|.|+|+ |+||+.++..|+.++. +++++|+.....+-. +.+.... .... +..|-....+.+.|+|+-+||
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~-i~~~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVK-ITGDGDYEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceE-EecCCChhhhcCCCEEEEeCC
Confidence 57999998 9999999999988764 899999873333222 2211111 1222 222222567889999999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.. .....+-.+.++.|..-...+.+...+.+. .|+.+|
T Consensus 79 ~p--rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 79 VP--RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred CC--CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 54 333345677899999999999999888875 444444
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=54.58 Aligned_cols=97 Identities=18% Similarity=0.280 Sum_probs=57.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHh-CCCeEEEE-ecCCCC-CccccccccCCCceEEEecccccccccCCCEEEEeccCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMD-RGDSVIVV-DNYFTG-KKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASP 192 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~-~G~~V~~l-~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~ 192 (447)
|+|.|.|++|-+|+.+++.+.+ .+.++... +|.... .........+.......-.|..+..+..+|+||.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT----- 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT----- 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-----
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-----
Confidence 5799999999999999999999 57786654 554311 112221111111222222244455566699999874
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCc
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~ 230 (447)
+...+...++.|.++|+.+|.-.|.
T Consensus 76 -------------~p~~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 76 -------------NPDAVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp --------------HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred -------------ChHHhHHHHHHHHhCCCCEEEECCC
Confidence 3344556788888888877765553
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0014 Score=64.45 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=69.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc------------------------cccccccCCCce
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK------------------------DNLIHHFGNPRF 165 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~------------------------~~~~~~~~~~~v 165 (447)
..++.++|+|.| .|.+|.++++.|++.|. +++++|++.-... +.+.+.-...++
T Consensus 20 ~~L~~~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i 98 (338)
T PRK12475 20 RKIREKHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI 98 (338)
T ss_pred HhhcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence 346778999999 58899999999999998 8888888642100 000000112345
Q ss_pred EEEecccc----cccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 166 ELIRHDVV----EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 166 ~~~~~D~~----~~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
+.+..|+. +..+.++|+||.+.. |...-..+-++|.+.++.+|+.+..+.+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D-----------------~~~~r~~in~~~~~~~ip~i~~~~~g~~G 154 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIIDATD-----------------NFDTRLLINDLSQKYNIPWIYGGCVGSYG 154 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecccEE
Confidence 55555554 234567999998762 11112235578888899999988776555
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=66.80 Aligned_cols=76 Identities=17% Similarity=0.110 Sum_probs=50.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccccc-CCCEEEEeccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL-EVDQIYHLACPA 190 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-~~d~Vih~Ag~~ 190 (447)
+.+|+|+|||++| +|..+++.|++.|++|++.++......... ..+....+.+.........+. ++|.||+++|+.
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~-~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~ 79 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEA-QELLEEGIKVICGSHPLELLDEDFDLMVKNPGIP 79 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHH-HHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCC
Confidence 4678999999877 999999999999999999987543222111 112222444443332222233 489999999864
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0048 Score=60.26 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=97.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEecCCCC--Cccc---ccccc--CCCceEEEecccccccccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-------SVIVVDNYFTG--KKDN---LIHHF--GNPRFELIRHDVVEPILLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-------~V~~l~r~~~~--~~~~---~~~~~--~~~~v~~~~~D~~~~~~~~~ 180 (447)
+.+|.|+|++|++|..++..|+..|. +++++|..... .... +.+.. ....+.+. .+ ....+.++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~-~~~~~~da 80 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TD-PEEAFKDV 80 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cC-hHHHhCCC
Confidence 45799999999999999999998874 78888885321 1111 11111 00112222 21 23567889
Q ss_pred CEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC---eEEEEeCcc---ccCCCCCCCCCCCcCCCCC-CCC
Q 013226 181 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTSE---VYGDPLQHPQAETYWGNVN-PIG 253 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~---r~v~~SS~~---v~g~~~~~~~~e~~~~~~~-~~~ 253 (447)
|+||.+||... ....+..+.+..|..-.+.+...+++++. .++.+|--. +|-. .+. . .+.
T Consensus 81 DvVVitAG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~------~k~-----s~g~p 147 (323)
T TIGR01759 81 DAALLVGAFPR--KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA------SKN-----APDIP 147 (323)
T ss_pred CEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH------HHH-----cCCCC
Confidence 99999999642 22345677899999999999999888752 455554211 1100 000 0 111
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCC
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~ 292 (447)
+....|.+..-.-++-..+++..+++...++-..|+|..
T Consensus 148 ~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH 186 (323)
T TIGR01759 148 PKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNH 186 (323)
T ss_pred HHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecC
Confidence 111222344444444445566778888877766777754
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0042 Score=60.95 Aligned_cols=96 Identities=19% Similarity=0.212 Sum_probs=60.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
+++|.|+||||++|+.|++.|.++++ ++..+... ....+.+. .....+++.+.|.. .+.++|+||-+++.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~~l~--~~~~~l~~~~~~~~--~~~~vD~vFla~p~-- 76 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGHSVP--FAGKNLRVREVDSF--DFSQVQLAFFAAGA-- 76 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCCeec--cCCcceEEeeCChH--HhcCCCEEEEcCCH--
Confidence 37899999999999999999998776 33444332 22222221 11123444444432 25689999987641
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
.-...++..+.+.|+++|=.|+..-+
T Consensus 77 ----------------~~s~~~v~~~~~~G~~VIDlS~~fR~ 102 (336)
T PRK05671 77 ----------------AVSRSFAEKARAAGCSVIDLSGALPS 102 (336)
T ss_pred ----------------HHHHHHHHHHHHCCCeEEECchhhcC
Confidence 01123677777788898888887753
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0024 Score=62.87 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=69.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc----------c--------------ccccccCCCce
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK----------D--------------NLIHHFGNPRF 165 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~----------~--------------~~~~~~~~~~v 165 (447)
..++..+|+|.| .|++|.+++..|++.|. +++++|.+.-... . .+.+.-....+
T Consensus 20 ~~L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 20 QKLREKHVLIIG-AGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred HHhcCCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 346778899999 59999999999999998 8999987531100 0 00000012234
Q ss_pred EEEeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCC
Q 013226 166 ELIRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 235 (447)
Q Consensus 166 ~~~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~ 235 (447)
+....++.. +.+.++|+||.+.. |...-..+.++|.+.++.+|+.++.+.+|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~D-----------------n~~~r~~ln~~~~~~~iP~i~~~~~g~~G~ 155 (339)
T PRK07688 99 EAIVQDVTAEELEELVTGVDLIIDATD-----------------NFETRFIVNDAAQKYGIPWIYGACVGSYGL 155 (339)
T ss_pred EEEeccCCHHHHHHHHcCCCEEEEcCC-----------------CHHHHHHHHHHHHHhCCCEEEEeeeeeeeE
Confidence 455445443 23567899998752 222233567888889999999888776663
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.01 Score=58.10 Aligned_cols=164 Identities=10% Similarity=0.034 Sum_probs=96.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEecCCCC--Cc---ccccccc-C-CCceEEEecccccccccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-------SVIVVDNYFTG--KK---DNLIHHF-G-NPRFELIRHDVVEPILLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-------~V~~l~r~~~~--~~---~~~~~~~-~-~~~v~~~~~D~~~~~~~~ 179 (447)
.+++|.|+|++|.+|..++..|+..|. ++.++|+.... .. .++.+.. . ...+.+.. -..+.+.+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~y~~~~d 80 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITD--DPNVAFKD 80 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEec--ChHHHhCC
Confidence 456899999999999999999988664 68888874321 11 1111111 0 01233221 22356788
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C--eEEEEeCcc---ccCCCCCCCCCCCcCCCCC-CC
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTSTSE---VYGDPLQHPQAETYWGNVN-PI 252 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~--r~v~~SS~~---v~g~~~~~~~~e~~~~~~~-~~ 252 (447)
.|+||-+||... ....+..+.+..|..-.+.+....+++. . .++.+|--. +|--. +. . .+
T Consensus 81 aDiVVitaG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~------k~-----s~g~ 147 (326)
T PRK05442 81 ADVALLVGARPR--GPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAM------KN-----APDL 147 (326)
T ss_pred CCEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHH------HH-----cCCC
Confidence 999999999643 2234567789999999999999998843 2 566666311 11000 00 0 01
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCC
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~ 292 (447)
.+....|.+-+-.-++-..+++..+++...++.-.|+|..
T Consensus 148 p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeH 187 (326)
T PRK05442 148 PAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNH 187 (326)
T ss_pred CHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECC
Confidence 1111222233334444445566678877777665667754
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0065 Score=61.48 Aligned_cols=163 Identities=7% Similarity=0.033 Sum_probs=99.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-------CC--eEEEEecCCCCCccccccccC-----CCceEEEecccccccccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDR-------GD--SVIVVDNYFTGKKDNLIHHFG-----NPRFELIRHDVVEPILLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~-------G~--~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~~D~~~~~~~~ 179 (447)
+.-+|.|+|++|.||.+++..|+.. |. +++.+++..+.......+... ..++.+... ....+.+
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~--~ye~~kd 176 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGID--PYEVFQD 176 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecC--CHHHhCc
Confidence 3457999999999999999999987 54 788888865544322221111 012222222 2356889
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHH-CCC--eEEEEeCcc---cc--CCCCCCCCCCCcCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR-VGA--RFLLTSTSE---VY--GDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~-~g~--r~v~~SS~~---v~--g~~~~~~~~e~~~~~~~~ 251 (447)
+|+||-+||... ....+-.+.++.|+.-.+.+....++ ++. .+|.+|--. .| -..... .+
T Consensus 177 aDiVVitAG~pr--kpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~----------~~ 244 (444)
T PLN00112 177 AEWALLIGAKPR--GPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPN----------IP 244 (444)
T ss_pred CCEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCC----------CC
Confidence 999999999642 22345677899999999999999998 554 666666321 11 000000 00
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCC
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~ 292 (447)
....=..+.+-.-++-..+++..+++...|+-..|+|..
T Consensus 245 --~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeH 283 (444)
T PLN00112 245 --AKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH 283 (444)
T ss_pred --cceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecC
Confidence 011111223333444445566778888877777778864
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0075 Score=59.78 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=57.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccC--------C--CceEEEecccccccccCCCEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFG--------N--PRFELIRHDVVEPILLEVDQI 183 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~--------~--~~v~~~~~D~~~~~~~~~d~V 183 (447)
+++|.|+||+|++|++|++.|.+... +++.+.++.......+..... . ..+.+...|. ..+.++|+|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~DvV 80 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP--EAVDDVDIV 80 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH--HHhcCCCEE
Confidence 47899999999999999999998765 888875543322222211100 0 1112221221 123578999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
|-+.+ .++ ...+.+.+.+.|+++|-.|+..
T Consensus 81 f~a~p----------------~~~--s~~~~~~~~~~G~~vIDls~~f 110 (349)
T PRK08664 81 FSALP----------------SDV--AGEVEEEFAKAGKPVFSNASAH 110 (349)
T ss_pred EEeCC----------------hhH--HHHHHHHHHHCCCEEEECCchh
Confidence 87653 111 1344566777888877777764
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00091 Score=64.45 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEecCCC--CCccccccccCC--CceEEEeccccc-----ccccCCCE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFT--GKKDNLIHHFGN--PRFELIRHDVVE-----PILLEVDQ 182 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~-V~~l~r~~~--~~~~~~~~~~~~--~~v~~~~~D~~~-----~~~~~~d~ 182 (447)
.++++++|+|+ |++|++++..|++.|++ |++++|+.. .+.+.+...+.. ..+.+...|+.+ ..+..+|+
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 56789999998 89999999999999985 999999742 222222221111 122233344432 23456899
Q ss_pred EEEeccC
Q 013226 183 IYHLACP 189 (447)
Q Consensus 183 Vih~Ag~ 189 (447)
||||-.+
T Consensus 203 lINaTp~ 209 (289)
T PRK12548 203 LVNATLV 209 (289)
T ss_pred EEEeCCC
Confidence 9998754
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.011 Score=50.39 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=63.4
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccc----------------------cccCCCceEEEecccc
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLI----------------------HHFGNPRFELIRHDVV 173 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~----------------------~~~~~~~v~~~~~D~~ 173 (447)
+|+|.| .|.+|.++++.|.+.|. +++++|.+.-....--+ ......+++.+..++.
T Consensus 1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 488999 59999999999999998 78888765221110000 0001123344444433
Q ss_pred c----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 174 E----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 174 ~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
+ ..+.++|+||.+.. |......+.+.|++.++.+|..++...+|
T Consensus 80 ~~~~~~~~~~~diVi~~~d-----------------~~~~~~~l~~~~~~~~i~~i~~~~~g~~g 127 (143)
T cd01483 80 EDNLDDFLDGVDLVIDAID-----------------NIAVRRALNRACKELGIPVIDAGGLGLGG 127 (143)
T ss_pred hhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcCCCcEE
Confidence 3 23567899998763 23334467788999998999888865433
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0064 Score=59.89 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
+.++|.|.||||++|++|++.|.+++| ++..+..... ..+.+.. . ..++.-.++....+.++|+||.+++..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs-aGk~~~~--~--~~~~~v~~~~~~~~~~~D~vf~a~p~~ 80 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS-AGKKVTF--E--GRDYTVEELTEDSFDGVDIALFSAGGS 80 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC-CCCeeee--c--CceeEEEeCCHHHHcCCCEEEECCCcH
Confidence 557899999999999999999999887 4444432211 1111111 1 122222233334567899999877521
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
....+...+.+.|+++|=.|+..-+
T Consensus 81 ------------------~s~~~~~~~~~~g~~VIDlS~~fR~ 105 (344)
T PLN02383 81 ------------------ISKKFGPIAVDKGAVVVDNSSAFRM 105 (344)
T ss_pred ------------------HHHHHHHHHHhCCCEEEECCchhhc
Confidence 1223444555678888888887643
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.016 Score=56.69 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccc---cccC--CCceEEEecccccccccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLI---HHFG--NPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~---~~~~--~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
+.++|.|+|+ |.+|..++..|+..| .+|+++|++.+....... +... .....+...+-.+ ++.++|+||.+|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 5678999996 999999999999888 689999986543221111 1111 1112222212223 678999999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeC
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 229 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS 229 (447)
|.... ......+.+..|..-.+.+.+.+.+... .++++|-
T Consensus 82 g~~~~--~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 82 GVQRK--EEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 86432 2234566788899888888888888764 4666653
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.012 Score=55.91 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=73.4
Q ss_pred EEEEcCCChhHHHHHHHHHhCC----CeEEEEecCCCCCccc---cccccCCC-ceEEEecccccccccCCCEEEEeccC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRG----DSVIVVDNYFTGKKDN---LIHHFGNP-RFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G----~~V~~l~r~~~~~~~~---~~~~~~~~-~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
|.|+|++|.+|..++..|+..| .+|.++|+........ +.+..... ...+...+-...++.++|+||.+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 5799998999999999999998 6899999865432211 11111111 22333333335678899999999985
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.... ..........|+.-.+.+.+.+++... .++.+|
T Consensus 81 ~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 81 GRKP--GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4322 233456778899999999999988764 555553
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0023 Score=69.54 Aligned_cols=156 Identities=16% Similarity=0.214 Sum_probs=101.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc---ccccccc--CCCceEEEecccccc-----------ccc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK---DNLIHHF--GNPRFELIRHDVVEP-----------ILL 178 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~---~~~~~~~--~~~~v~~~~~D~~~~-----------~~~ 178 (447)
.|.++|+||-|+.|.+|++.|..||.+-.++..+..-+. ....+.. ...++.+-..|++.. .+.
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl~ 1847 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKLG 1847 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhcc
Confidence 467999999999999999999999997666543322111 1111111 122444444555433 123
Q ss_pred CCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHHCCC---eEEEEeCcccc-CCCCCCCCCCCcCCCCC
Q 013226 179 EVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTSEVY-GDPLQHPQAETYWGNVN 250 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~~g~---r~v~~SS~~v~-g~~~~~~~~e~~~~~~~ 250 (447)
-+-.|||+|++......++. ....-+.-+.||.+|=+..++.-. -||.+||.+.- |+.+
T Consensus 1848 ~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~G------------- 1914 (2376)
T KOG1202|consen 1848 PVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNAG------------- 1914 (2376)
T ss_pred cccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCCc-------------
Confidence 47889999988766555543 233445567788888887777642 68999998742 2222
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNT 288 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i 288 (447)
.++||.+..+.|++++.- +..|++-+.|.=|-|
T Consensus 1915 ----QtNYG~aNS~MERiceqR-r~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1915 ----QTNYGLANSAMERICEQR-RHEGFPGTAIQWGAI 1947 (2376)
T ss_pred ----ccccchhhHHHHHHHHHh-hhcCCCcceeeeecc
Confidence 388999999999998773 445777777765544
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.015 Score=56.63 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=72.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCccccccccC----CCceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKDNLIHHFG----NPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
|+|.|.|+ |.+|..++..|+.+| .+|.+++++............. .........|. +.+.++|+||.+++.
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~--~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY--ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH--HHhCCCCEEEEccCC
Confidence 57999996 999999999999999 5899999865433211111110 01122233332 457889999999985
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.. ....+..+....|+.-...+.+.+++++. .++.++
T Consensus 78 ~~--~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 78 NQ--KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 32 22334566788999999999988888764 455444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0072 Score=59.71 Aligned_cols=232 Identities=16% Similarity=0.181 Sum_probs=116.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccC-CC---ceEEEecccccccccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFG-NP---RFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~-~~---~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+++|.|+||||++|+.+++.|.++ +.+++.+.++.. ..+.+..... .. ...+.+.|. ....++|+||-|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLDP--EILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-cCcchHHhCcccccccCceeecCCH--HHhcCCCEEEECCCc
Confidence 478999999999999999999987 568877665322 2222211111 00 112222332 144679999987631
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCC--------CC-----------CCCCCc---CC
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPL--------QH-----------PQAETY---WG 247 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~--------~~-----------~~~e~~---~~ 247 (447)
.....++..+.+.|+++|=.|+..-+.+.. .+ .+.|-. ..
T Consensus 79 ------------------~~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~ 140 (343)
T PRK00436 79 ------------------GVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIK 140 (343)
T ss_pred ------------------HHHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhc
Confidence 112345666667788899888876542211 00 001100 00
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhhCCc---EEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGLGIE---ARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~---~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
........++|..+-..+-.-+.. ...++ +++--...+-|.|............ . +.+..+.-.
T Consensus 141 ~~~iIanPgC~~t~~~l~L~PL~~---~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~-----~-~~~~~y~~~---- 207 (343)
T PRK00436 141 GARLIANPGCYPTASLLALAPLLK---AGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEV-----N-ENLRPYKVG---- 207 (343)
T ss_pred CCCEEECCCCHHHHHHHHHHHHHH---cCCCCCCCEEEEEEEecccCCCCccccccchhh-----c-CCeeecccC----
Confidence 011222336676655544433322 23333 3333333444544321111100111 1 122222221
Q ss_pred ccccHHHHHHHHHHHHcC--------C-CCC---cEEecCCCccCHHHHHHHHHHHhCCCCcEEecCC
Q 013226 325 SFQFVSDLVEGLIRLMEG--------D-HVG---PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPN 380 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~--------~-~~g---~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~ 380 (447)
.-.|...+.+.+-.++.+ + ..| +.++.-.++++..|+.+.+.+.+.....+++.+.
T Consensus 208 ~h~h~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~v~v~~~ 275 (343)
T PRK00436 208 GHRHTPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYADEPFVRVLPE 275 (343)
T ss_pred CCCCHHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCC
Confidence 223666665555433211 1 112 5566556789999999999988876666665443
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0052 Score=60.54 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=56.8
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEE---EEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVI---VVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPV 193 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~---~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~ 193 (447)
+|.|.||||++|+.|++.|.++++.++ .+.+... ....+. +. ..+....|+....+.++|+||-++|..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~-~g~~~~--~~--~~~~~~~~~~~~~~~~~D~v~~a~g~~--- 72 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRS-AGRKVT--FK--GKELEVNEAKIESFEGIDIALFSAGGS--- 72 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecccc-CCCeee--eC--CeeEEEEeCChHHhcCCCEEEECCCHH---
Confidence 489999999999999999999888543 4434322 112221 11 234444444445567899999988621
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 194 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 194 ~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
-+..+...+.+.|+++|=.|+..
T Consensus 73 ---------------~s~~~a~~~~~~G~~VID~ss~~ 95 (339)
T TIGR01296 73 ---------------VSKEFAPKAAKCGAIVIDNTSAF 95 (339)
T ss_pred ---------------HHHHHHHHHHHCCCEEEECCHHH
Confidence 12234455556677766666654
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.012 Score=57.15 Aligned_cols=109 Identities=16% Similarity=0.118 Sum_probs=73.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---ccccccCC-CceEEEe-cccccccccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHFGN-PRFELIR-HDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~~~-~~v~~~~-~D~~~~~~~~~d~Vih~A 187 (447)
.++|.|+|+ |.||..++..|+..|. +++++|........ ++.+.... ....+.. .|. +.+.++|+||-+|
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy--~~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY--SVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH--HHhCCCCEEEECC
Confidence 358999995 9999999999988875 78999886542221 11111110 1112232 332 2478999999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
|.... ...+..+.+..|..-.+.+.+.+++++. .++.+|
T Consensus 80 G~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 80 GARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 96432 2344567889999999999999988864 566666
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0044 Score=56.31 Aligned_cols=76 Identities=16% Similarity=0.323 Sum_probs=55.1
Q ss_pred CccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 108 PLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 108 ~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
|....+++++|+|+|| |-+|...++.|++.|++|+++.+.. .+.+........+.+...+..+..+.+.|+||-+.
T Consensus 3 Pl~l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~---~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT 78 (202)
T PRK06718 3 PLMIDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL---TENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT 78 (202)
T ss_pred ceEEEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC---CHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC
Confidence 4556789999999995 9999999999999999999997532 12222222334566666666666778899888654
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.016 Score=56.20 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=73.5
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccc---cccccC---CCceEEEecccccccccCCCEEEEecc
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDN---LIHHFG---NPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~---~~~~~~---~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
+|.|.|+ |.||..++..|+.++. +++++|...+..... +.+... ...+.+...| -+.+.++|+||-+||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~--y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD--YDDCADADIIVITAG 77 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC--HHHhCCCCEEEECCC
Confidence 4789997 9999999999998875 799999865433322 222111 1134444333 356889999999999
Q ss_pred CCCCCCcccC--hHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 189 PASPVHYKFN--PVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 189 ~~~~~~~~~~--~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.... ...+ -.+.+..|..-.+.+...+++++. .++.+|
T Consensus 78 ~~~k--pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 78 PSID--PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 6432 1222 367889999999999999998875 444444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.017 Score=56.94 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=73.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccc---cccccC-CCceEEEe-cccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDN---LIHHFG-NPRFELIR-HDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~---~~~~~~-~~~v~~~~-~D~~~~~~~~~d~Vih~Ag 188 (447)
++|.|+|+ |.||..++..|+..|. ++.++|......... +.+... .....+.. .| -..+.++|+||-+||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~d--y~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTD--YAVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCC--HHHhCCCCEEEECCC
Confidence 69999995 9999999999998875 799999865433221 111111 01123322 23 234789999999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.... ...+..+.+..|+.-.+.+.+.+++++. .++.+|
T Consensus 115 ~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 115 ARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 6432 2334567889999999999999988764 566665
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=56.73 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=71.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccc---cccC--CCceEEE-ecccccccccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLI---HHFG--NPRFELI-RHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~---~~~~--~~~v~~~-~~D~~~~~~~~~d~Vih~A 187 (447)
+|+|.|+|+ |.+|..++..|+..|. +|+++|+..+....... +... .....+. ..|. ..+.++|+||.++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~--~~~~~aDiVii~~ 78 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY--EDIAGSDVVVITA 78 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH--HHHCCCCEEEECC
Confidence 478999997 9999999999998875 99999986543322111 1110 0112222 1232 3578899999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
|... ....+..+.+..|+.-...+++.+.+... .+|.+|
T Consensus 79 ~~p~--~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t 119 (307)
T PRK06223 79 GVPR--KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVT 119 (307)
T ss_pred CCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 8532 22334456777899888888888877654 455554
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=50.05 Aligned_cols=102 Identities=22% Similarity=0.329 Sum_probs=64.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcccccc------c----------------cCCCceEEEecc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIH------H----------------FGNPRFELIRHD 171 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~------~----------------~~~~~v~~~~~D 171 (447)
.++|+|.| .|.+|..++..|.+.|. +++++|.+.-....--.+ . ....++..+..+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 46799999 89999999999999998 788888642211110000 0 012244555555
Q ss_pred ccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 172 VVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 172 ~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
+.+ ..+.++|+||.+.. |...-..+.+.|++.++.+|+.+..+.+|
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d-----------------~~~~~~~l~~~~~~~~~p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVD-----------------SLAARLLLNEICREYGIPFIDAGVNGFYG 130 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESS-----------------SHHHHHHHHHHHHHTT-EEEEEEEETTEE
T ss_pred cccccccccccCCCEEEEecC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence 522 23457999998863 22233356778999998999888766544
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0096 Score=49.93 Aligned_cols=88 Identities=23% Similarity=0.329 Sum_probs=63.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc---cCCCEEEEeccCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL---LEVDQIYHLACPA 190 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---~~~d~Vih~Ag~~ 190 (447)
+++++++.| .| .|.+++..|.+.|++|+++|.++... +. .....++++..|++++.+ .++|.|+-+=
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~aV-~~----a~~~~~~~v~dDlf~p~~~~y~~a~liysir--- 85 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKAV-EK----AKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR--- 85 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHHH-HH----HHHhCCeEEECcCCCCCHHHHhcCCEEEEeC---
Confidence 557899999 56 88899999999999999999865421 11 122357899999998865 4688888652
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEE
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v 225 (447)
.+.++ ...+++.+++.++.++
T Consensus 86 -------pp~el-------~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 86 -------PPRDL-------QPFILELAKKINVPLI 106 (134)
T ss_pred -------CCHHH-------HHHHHHHHHHcCCCEE
Confidence 22222 2368899999998443
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0085 Score=54.51 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=66.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc----------------------ccccccCCCceEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD----------------------NLIHHFGNPRFELI 168 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~----------------------~~~~~~~~~~v~~~ 168 (447)
.++..+|+|.| .|++|.++++.|++.|. +++++|.+.-.... .+...-...+++..
T Consensus 18 kl~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 18 RLLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HhcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 45778899999 89999999999999997 88888875221100 00000011233333
Q ss_pred eccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 169 RHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 169 ~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
...+.+ ..+.++|+||.+.. |...-..+.+.|++.++.+|+.+..+.+|
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~d-----------------~~~~r~~l~~~~~~~~ip~i~~~~~g~~G 149 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCTD-----------------NFATRYLINDACVALGTPLISAAVVGFGG 149 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCeE
Confidence 333322 24567999998752 12222346678888998999988766554
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.014 Score=59.25 Aligned_cols=164 Identities=11% Similarity=0.028 Sum_probs=94.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC---CC----eEEEEecC--CCCCcc---cccccc-C-CCceEEEecccccccccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDR---GD----SVIVVDNY--FTGKKD---NLIHHF-G-NPRFELIRHDVVEPILLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~---G~----~V~~l~r~--~~~~~~---~~~~~~-~-~~~v~~~~~D~~~~~~~~~ 180 (447)
.-+|+||||+|.||.+|+-.++.= |. .++++|.. ...... ++.+.. . ...+.+.. -...++.++
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~--~~~ea~~da 200 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT--DLDVAFKDA 200 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE--CCHHHhCCC
Confidence 457999999999999999988762 31 35556652 111111 111111 0 11233332 234678899
Q ss_pred CEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCcc----ccCCCCCCCCCCCcCCCCCCCC
Q 013226 181 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSE----VYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~----v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
|+||-+||... ....+-.+..+.|..-...+.++..+++ .+++.+.|-- +|--... . ..+.
T Consensus 201 DvvIitag~pr--k~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~-----a-----pgiP 268 (452)
T cd05295 201 HVIVLLDDFLI--KEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKY-----A-----PSIP 268 (452)
T ss_pred CEEEECCCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHH-----c-----CCCC
Confidence 99999999642 2234566789999999999999888765 3677666511 1100000 0 0111
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCC
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~ 292 (447)
+...-+.+....-++...+++..+++...|+-..|+|..
T Consensus 269 ~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeH 307 (452)
T cd05295 269 RKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNI 307 (452)
T ss_pred HHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEcc
Confidence 112222333334445555667778888888777787754
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.019 Score=56.70 Aligned_cols=98 Identities=13% Similarity=0.141 Sum_probs=57.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccC------C----CceEEEecccccccccCCCEEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFG------N----PRFELIRHDVVEPILLEVDQIY 184 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~------~----~~v~~~~~D~~~~~~~~~d~Vi 184 (447)
++|.|+|++|++|++|++.|.++. .+|..+..+............. . ....+. +.....+.++|+|+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIV--EPEPVASKDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEE--eCCHHHhccCCEEE
Confidence 479999999999999999998876 4887774432222222211110 0 011111 11222346799999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
-+.+ .++. ..+...+.+.|+++|..|+..-+
T Consensus 79 ~a~p----------------~~~s--~~~~~~~~~~G~~VIDlsg~fR~ 109 (341)
T TIGR00978 79 SALP----------------SEVA--EEVEPKLAEAGKPVFSNASNHRM 109 (341)
T ss_pred EeCC----------------HHHH--HHHHHHHHHCCCEEEECChhhcc
Confidence 8764 2221 12335666678888888887644
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.014 Score=54.22 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=65.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcccccc-------ccC----------------CCceEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIH-------HFG----------------NPRFEL 167 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~-------~~~----------------~~~v~~ 167 (447)
.++..+|+|.| .|++|.++++.|++.|. +++++|.+.-... ++.. ..+ ..+++.
T Consensus 18 ~L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~s-NL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 18 KLKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELS-NLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred HHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCc-ccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 45677899999 89999999999999998 7777765422111 1100 001 123444
Q ss_pred Eeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 168 IRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 168 ~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
+...+.. +.+.++|+||.+.. |...-..+.++|.+.++.+|+.+..+.+|
T Consensus 96 ~~~~i~~~~~~~~~~~~DvVi~~~d-----------------~~~~r~~l~~~~~~~~ip~i~~g~~g~~g 149 (228)
T cd00757 96 YNERLDAENAEELIAGYDLVLDCTD-----------------NFATRYLINDACVKLGKPLVSGAVLGFEG 149 (228)
T ss_pred ecceeCHHHHHHHHhCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 4444322 24567999998763 11222356788888898999887666544
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0014 Score=62.37 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=51.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCC--CceEEEecccccccccCCCEEEEeccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN--PRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~--~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
..++|-||+||.|+.++++|+++|.+-.+..|+.. +-..+...++. ..+.....+..++.+.+.++|+||+|+..
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~-kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt 83 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSA-KLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGPYT 83 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHH-HHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEecccccc
Confidence 46999999999999999999999998866666432 22222222221 12222223456667788999999999764
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.015 Score=54.96 Aligned_cols=86 Identities=19% Similarity=0.326 Sum_probs=53.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 194 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~ 194 (447)
++|.|+|++|.+|+.+++.+.+. +.++..+......+.... . ...+...+-.+..+.++|+||.++.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~----~--~~~i~~~~dl~~ll~~~DvVid~t~p----- 70 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ----G--ALGVAITDDLEAVLADADVLIDFTTP----- 70 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc----C--CCCccccCCHHHhccCCCEEEECCCH-----
Confidence 68999999999999999988864 678777544322222111 1 11221222233344579999988731
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHCCCeEE
Q 013226 195 YKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225 (447)
Q Consensus 195 ~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v 225 (447)
+ ....++..|.++|+++|
T Consensus 71 -----------~--~~~~~~~~al~~G~~vv 88 (257)
T PRK00048 71 -----------E--ATLENLEFALEHGKPLV 88 (257)
T ss_pred -----------H--HHHHHHHHHHHcCCCEE
Confidence 1 12356677778888777
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.013 Score=57.91 Aligned_cols=98 Identities=11% Similarity=0.150 Sum_probs=59.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEE-ecCCCCCccccccccC---CC-ceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR-GDSVIVV-DNYFTGKKDNLIHHFG---NP-RFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l-~r~~~~~~~~~~~~~~---~~-~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
++|.|+||||++|+.+++.|.+. +.+++.+ +++.. ....+..... .. ...+...|.. ..+.++|+||-|.+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~s-agk~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRES-AGKPVSEVHPHLRGLVDLNLEPIDEE-EIAEDADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchh-cCCChHHhCccccccCCceeecCCHH-HhhcCCCEEEECCCc
Confidence 57999999999999999999987 5577744 44321 1121211111 10 1222222322 222479999987641
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
. ....++..+.+.|+++|=.|+..-+
T Consensus 79 ~------------------~s~~~~~~~~~~G~~VIDlS~~fR~ 104 (346)
T TIGR01850 79 G------------------VSAELAPELLAAGVKVIDLSADFRL 104 (346)
T ss_pred h------------------HHHHHHHHHHhCCCEEEeCChhhhc
Confidence 1 2345666666778899999987644
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.02 Score=51.87 Aligned_cols=106 Identities=19% Similarity=0.299 Sum_probs=65.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccc------------------------cccccCCCceE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDN------------------------LIHHFGNPRFE 166 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~------------------------~~~~~~~~~v~ 166 (447)
.++..+|+|.|++| +|.++++.|+..|. +++++|.+.-....- +.+.-...+++
T Consensus 16 ~L~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 16 KLRSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLS 94 (198)
T ss_pred HHhhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEE
Confidence 35667899999555 99999999999997 688887652211100 00000112333
Q ss_pred EEecccc------cccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCC
Q 013226 167 LIRHDVV------EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 235 (447)
Q Consensus 167 ~~~~D~~------~~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~ 235 (447)
.+..++. +..+.++|+||.+-. |......+-+.|++.++.+|+.++.+.+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~dvVi~~~d-----------------~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 152 (198)
T cd01485 95 IVEEDSLSNDSNIEEYLQKFTLVIATEE-----------------NYERTAKVNDVCRKHHIPFISCATYGLIGY 152 (198)
T ss_pred EEecccccchhhHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCEEE
Confidence 3333332 123456888886531 222233466889999999999998777664
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.032 Score=54.13 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=71.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccc---ccc--CCCceEEE-ecccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLI---HHF--GNPRFELI-RHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~---~~~--~~~~v~~~-~~D~~~~~~~~~d~Vih~Ag 188 (447)
|+|.|.|+ |.+|..++..|+.+|. +|+++|........... +.. ......+. ..|.. .+.++|+||-+||
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~--~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA--DTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH--HhCCCCEEEEcCC
Confidence 57999995 9999999999999886 89999985432221111 000 00111221 23432 3678999999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeC
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 229 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS 229 (447)
... ....+..+.+..|..-...+++.+.+++. .+|.+|-
T Consensus 79 ~p~--~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 79 LPR--KPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 532 22334556888999999999998887754 5665554
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.036 Score=54.22 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccc---ccc--CCCceEEEe-cccccccccCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLI---HHF--GNPRFELIR-HDVVEPILLEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~---~~~--~~~~v~~~~-~D~~~~~~~~~d~Vih~ 186 (447)
+.++|.|+| +|.+|..++..|+..|. +|+++|+++........ +.. ......+.. .|. +++.++|+||.+
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~--~~l~~aDiVI~t 81 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY--EDIAGSDVVIVT 81 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH--HHhCCCCEEEEC
Confidence 446899999 69999999999999995 89999986553321111 111 111223332 343 467899999999
Q ss_pred ccCCCCCCc---ccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeC
Q 013226 187 ACPASPVHY---KFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 229 (447)
Q Consensus 187 Ag~~~~~~~---~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS 229 (447)
||......- +.+..+.+..|+.-.+.+.+.+.+... .++.+|-
T Consensus 82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 986432111 114556778898888888888888764 5666653
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.017 Score=54.28 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=65.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccc----------------------cccccCCCceEE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDN----------------------LIHHFGNPRFEL 167 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~----------------------~~~~~~~~~v~~ 167 (447)
..++..+|+|.|+ |++|.++++.|++.|. +++++|.+.-....- +.+.-...+++.
T Consensus 28 ~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 28 EKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET 106 (245)
T ss_pred HHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 3467789999996 9999999999999997 788887642211100 000001123344
Q ss_pred Eeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 168 IRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 168 ~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
+...+.+ ..+.++|+||.+.. |...-..+-++|.+.++.+|+.++...+|
T Consensus 107 ~~~~i~~~~~~~~~~~~DiVi~~~D-----------------~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 160 (245)
T PRK05690 107 INARLDDDELAALIAGHDLVLDCTD-----------------NVATRNQLNRACFAAKKPLVSGAAIRMEG 160 (245)
T ss_pred EeccCCHHHHHHHHhcCCEEEecCC-----------------CHHHHHHHHHHHHHhCCEEEEeeeccCCc
Confidence 4433333 23567899998762 22222346678888888888876654443
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.018 Score=53.86 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=64.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcccccc-------ccC----------------CCceEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIH-------HFG----------------NPRFEL 167 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~-------~~~----------------~~~v~~ 167 (447)
.++..+|+|.| .|++|..++..|++.|. +++++|.+.-... ++.. ..+ ..+++.
T Consensus 21 ~L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~s-NL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~ 98 (240)
T TIGR02355 21 ALKASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLS-NLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP 98 (240)
T ss_pred HHhCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCccccc-CcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 45677899998 89999999999999997 7788776532211 1100 000 112333
Q ss_pred Eeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 168 IRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 168 ~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
+...+.+ +.+.++|+||.+.. |......+-++|.+.++.+|+.++...+|
T Consensus 99 ~~~~i~~~~~~~~~~~~DlVvd~~D-----------------~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 99 INAKLDDAELAALIAEHDIVVDCTD-----------------NVEVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred EeccCCHHHHHHHhhcCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 3322222 23457888887762 22223345688889999999877665544
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.019 Score=55.61 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=71.4
Q ss_pred EEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCcc---ccccccCC-CceEEEecccccccccCCCEEEEeccCCC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKD---NLIHHFGN-PRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~---~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
|.|.| +|.+|..++..|+..| .+++++|+..+.... ++.+.... ....+...+- ...+.++|+||.+||...
T Consensus 1 i~iiG-aG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIG-AGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR 78 (300)
T ss_pred CEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence 45778 5899999999999988 689999986543221 11111111 1122222222 347889999999998532
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
....+..+....|+.-.+.+.+.+++++. .++.+|
T Consensus 79 --~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 79 --KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 22345567888999999999999988764 566555
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0041 Score=59.62 Aligned_cols=74 Identities=24% Similarity=0.385 Sum_probs=49.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCC-ceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
...+++++|+|+ |++|+.++..|.+.| .+|++++|+.... +.+...+... .+.+ ..+ ....+.+.|+|||+...
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a-~~l~~~~~~~~~~~~-~~~-~~~~~~~~DivInaTp~ 195 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERA-EELAKLFGALGKAEL-DLE-LQEELADFDLIINATSA 195 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHhhhccceee-ccc-chhccccCCEEEECCcC
Confidence 457789999995 999999999999999 6999999964332 2222222111 1222 112 22445679999998764
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0014 Score=62.87 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=53.6
Q ss_pred eEEEEcCCChhHHHHHHHHHh----CCCeEEEEecCCCCCccccccccC-----CCceEEEeccccccc-----ccCCCE
Q 013226 117 RILVTGGAGFVGSHLVDRLMD----RGDSVIVVDNYFTGKKDNLIHHFG-----NPRFELIRHDVVEPI-----LLEVDQ 182 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~----~G~~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~~D~~~~~-----~~~~d~ 182 (447)
.++|.|||||-|+.+++++.+ .|...-+..|+..+..+.+..... ....-++-+|..+++ ...+.+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~v 86 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARV 86 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEE
Confidence 489999999999999999999 677888888875543332222111 122337778886654 456999
Q ss_pred EEEeccCCC
Q 013226 183 IYHLACPAS 191 (447)
Q Consensus 183 Vih~Ag~~~ 191 (447)
|+||+|+..
T Consensus 87 ivN~vGPyR 95 (423)
T KOG2733|consen 87 IVNCVGPYR 95 (423)
T ss_pred EEeccccce
Confidence 999999753
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.024 Score=56.55 Aligned_cols=162 Identities=9% Similarity=0.044 Sum_probs=93.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-e----EEE--E--ecCCCCCccccc---ccc-C-CCceEEEecccccccccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-S----VIV--V--DNYFTGKKDNLI---HHF-G-NPRFELIRHDVVEPILLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~----V~~--l--~r~~~~~~~~~~---~~~-~-~~~v~~~~~D~~~~~~~~~ 180 (447)
.-+|.|+|++|.+|.+++..|+..|. . |.+ + ++..+....... +.. . ...+.+... ....+.++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~--~y~~~kda 121 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGID--PYEVFEDA 121 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecC--CHHHhCCC
Confidence 45799999999999999999998864 2 333 3 554333221111 111 0 012222222 23568899
Q ss_pred CEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C--eEEEEeCcc---cc--CCCCCCCCCCCcCCCCCCC
Q 013226 181 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTSTSE---VY--GDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~--r~v~~SS~~---v~--g~~~~~~~~e~~~~~~~~~ 252 (447)
|+||-+||... ....+..+.+..|+.-.+.+...++++. . ++|.+|--. .| -.... . .+
T Consensus 122 DIVVitAG~pr--kpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg-~---------~~- 188 (387)
T TIGR01757 122 DWALLIGAKPR--GPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAP-N---------IP- 188 (387)
T ss_pred CEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcC-C---------Cc-
Confidence 99999999642 2234567789999999999999998844 3 666666311 11 00000 0 00
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCC
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~ 292 (447)
....=+.+.+-.-++-..+++..+++...|+-..|+|..
T Consensus 189 -~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeH 227 (387)
T TIGR01757 189 -RKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNH 227 (387)
T ss_pred -ccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecC
Confidence 001112233333444445566677777777666677754
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.021 Score=54.63 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=70.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc----------------------ccccccCCCceEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD----------------------NLIHHFGNPRFELI 168 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~----------------------~~~~~~~~~~v~~~ 168 (447)
.+...+|||.| .|++|.++++.|+..|. +|+++|.+.-.... .+.+.-...+++..
T Consensus 16 kL~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~ 94 (286)
T cd01491 16 KLQKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVS 94 (286)
T ss_pred HHhcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35667899999 88999999999999998 67777754221110 00000112345556
Q ss_pred ecccccccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCC
Q 013226 169 RHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 235 (447)
Q Consensus 169 ~~D~~~~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~ 235 (447)
..++.+..+.+.|+||.+.. |......+-++|++.++.||...+.+.+|.
T Consensus 95 ~~~~~~~~l~~fdvVV~~~~-----------------~~~~~~~in~~c~~~~ipfI~a~~~G~~G~ 144 (286)
T cd01491 95 TGPLTTDELLKFQVVVLTDA-----------------SLEDQLKINEFCHSPGIKFISADTRGLFGS 144 (286)
T ss_pred eccCCHHHHhcCCEEEEecC-----------------CHHHHHHHHHHHHHcCCEEEEEeccccEEE
Confidence 55555666778999987752 222233566889998999999998887764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.14 Score=43.96 Aligned_cols=181 Identities=19% Similarity=0.136 Sum_probs=98.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccc--ccc----------cc--cCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV--VEP----------IL--LEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~--~~~----------~~--~~~ 180 (447)
..+|+|-||-|-+|+.+++.+.+++|-|.-+|-......+. --+++.+. +++ .+ .++
T Consensus 3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~Ad~---------sI~V~~~~swtEQe~~v~~~vg~sL~gekv 73 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQADS---------SILVDGNKSWTEQEQSVLEQVGSSLQGEKV 73 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccccc---------eEEecCCcchhHHHHHHHHHHHHhhccccc
Confidence 35799999999999999999999999988887643322111 11122221 111 11 249
Q ss_pred CEEEEeccCCCCC-----CcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeC-ccccCCCCCCCCCCCcCCCCCCC
Q 013226 181 DQIYHLACPASPV-----HYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTST-SEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 181 d~Vih~Ag~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS-~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
|.||+.||-..-. .+..+.+.+++-.+...---...+..+- . -++.+.. -...+. .
T Consensus 74 Dav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~g----------------T 137 (236)
T KOG4022|consen 74 DAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGG----------------T 137 (236)
T ss_pred ceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCC----------------C
Confidence 9999999743211 1122334455444433222222232221 1 2333333 223221 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh-hCCc----EEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG-LGIE----ARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~-~~i~----~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
...-.|+..|++..++.++++.+ .|++ ...|-|-.+-.|- .++-++ + ...-+|.
T Consensus 138 PgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPM-----------------NRKwMP---~-ADfssWT 196 (236)
T KOG4022|consen 138 PGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPM-----------------NRKWMP---N-ADFSSWT 196 (236)
T ss_pred CcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCcc-----------------ccccCC---C-CcccCcc
Confidence 12367999999999999998753 4544 3334443333332 111121 1 1234677
Q ss_pred cHHHHHHHHHHHHc
Q 013226 328 FVSDLVEGLIRLME 341 (447)
Q Consensus 328 ~v~D~a~ai~~~l~ 341 (447)
+.+.+++.++.-..
T Consensus 197 PL~fi~e~flkWtt 210 (236)
T KOG4022|consen 197 PLSFISEHFLKWTT 210 (236)
T ss_pred cHHHHHHHHHHHhc
Confidence 88888887666544
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.019 Score=52.36 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=57.2
Q ss_pred CccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 108 PLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 108 ~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
|....++|++|+|.| .|-+|..-++.|++.|++|++++.... +.+.......++.++..+.....+.+++.||-+-
T Consensus 2 P~~l~l~gk~vlVvG-gG~va~rk~~~Ll~~ga~VtVvsp~~~---~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at 77 (205)
T TIGR01470 2 PVFANLEGRAVLVVG-GGDVALRKARLLLKAGAQLRVIAEELE---SELTLLAEQGGITWLARCFDADILEGAFLVIAAT 77 (205)
T ss_pred CeEEEcCCCeEEEEC-cCHHHHHHHHHHHHCCCEEEEEcCCCC---HHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECC
Confidence 344567899999999 799999999999999999999975332 2222222334788888887777788888888543
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0088 Score=58.23 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=31.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
|+|.|+| .|.+|..++..|+++|++|++.+++..
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 5799999 999999999999999999999998643
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0063 Score=58.07 Aligned_cols=74 Identities=22% Similarity=0.315 Sum_probs=48.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCC-CceEEEecccccccccCCCEEEEeccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN-PRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
..+++++|+|+ |++|+.++..|++.|++|++++|+.... +.+.+.... ..+.....+ +....++|+|||+.+..
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~-~~la~~~~~~~~~~~~~~~--~~~~~~~DivInatp~g 189 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKA-EELAERFQRYGEIQAFSMD--ELPLHRVDLIINATSAG 189 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHhhcCceEEechh--hhcccCccEEEECCCCC
Confidence 35789999997 8999999999999999999998864322 222222111 112222222 22335689999998753
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.025 Score=51.25 Aligned_cols=106 Identities=19% Similarity=0.307 Sum_probs=64.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc----------c------------cccccCCCceEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD----------N------------LIHHFGNPRFELI 168 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~----------~------------~~~~~~~~~v~~~ 168 (447)
.++.++|+|.| .|.+|.++++.|+..|. +++++|.+.-.... . +.+.-...+++..
T Consensus 18 ~L~~s~VlIiG-~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 18 RLRSARILLIG-LKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHhCcEEEEc-CCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 45677899998 55599999999999998 68888764221100 0 0000011233333
Q ss_pred eccccc---ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCC
Q 013226 169 RHDVVE---PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 235 (447)
Q Consensus 169 ~~D~~~---~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~ 235 (447)
...+.+ ..+.++|+||.+.. |...-..+-+.|++.++.+|+.++.+.+|.
T Consensus 97 ~~~~~~~~~~~~~~~dvVi~~~~-----------------~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 149 (197)
T cd01492 97 TDDISEKPEEFFSQFDVVVATEL-----------------SRAELVKINELCRKLGVKFYATGVHGLFGF 149 (197)
T ss_pred ecCccccHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecCCEEE
Confidence 332222 23567899886642 122223456789999999999988776653
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.033 Score=55.30 Aligned_cols=105 Identities=18% Similarity=0.093 Sum_probs=66.8
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcccccc-----------------------ccCCCceE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIH-----------------------HFGNPRFE 166 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~-----------------------~~~~~~v~ 166 (447)
..++..+|+|.| .|++|.+++..|++.|. +++++|.+.-... ++.. .-...+++
T Consensus 24 ~~L~~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~s-NL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~ 101 (355)
T PRK05597 24 QSLFDAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLS-NLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVT 101 (355)
T ss_pred HHHhCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEccc-ccccCcccChhHCCChHHHHHHHHHHHHCCCcEEE
Confidence 346778999999 59999999999999997 7888877532111 0100 00112344
Q ss_pred EEeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 167 LIRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 167 ~~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
.+...+.. ..+.++|+||.+.. |...-..+-++|.+.++.+|+.++.+.+|
T Consensus 102 ~~~~~i~~~~~~~~~~~~DvVvd~~d-----------------~~~~r~~~n~~c~~~~ip~v~~~~~g~~g 156 (355)
T PRK05597 102 VSVRRLTWSNALDELRDADVILDGSD-----------------NFDTRHLASWAAARLGIPHVWASILGFDA 156 (355)
T ss_pred EEEeecCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEecCeE
Confidence 44444432 24567999998862 22222345678888898999887665444
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.026 Score=53.74 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=64.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccc-------c----------------CCCceE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHH-------F----------------GNPRFE 166 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~-------~----------------~~~~v~ 166 (447)
..++..+|+|.| .|++|.+++..|++.|. +++++|.+.-... ++... . ...+++
T Consensus 23 ~kL~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~S-NLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~ 100 (287)
T PRK08223 23 QRLRNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELR-NFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIR 100 (287)
T ss_pred HHHhcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchh-ccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEE
Confidence 346777899999 89999999999999997 7788876522111 01000 0 112344
Q ss_pred EEeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccc
Q 013226 167 LIRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 232 (447)
Q Consensus 167 ~~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v 232 (447)
.+...+.+ ..+.++|+||.+.- + .++..-..+-++|.+.++.+|+.|....
T Consensus 101 ~~~~~l~~~n~~~ll~~~DlVvD~~D---------~------~~~~~r~~ln~~c~~~~iP~V~~~~~g~ 155 (287)
T PRK08223 101 AFPEGIGKENADAFLDGVDVYVDGLD---------F------FEFDARRLVFAACQQRGIPALTAAPLGM 155 (287)
T ss_pred EEecccCccCHHHHHhCCCEEEECCC---------C------CcHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 44433333 33567899986541 0 0112234566789999999998766553
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.03 Score=51.30 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=64.8
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc---c--------------cccc----cCCCceEEE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD---N--------------LIHH----FGNPRFELI 168 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~---~--------------~~~~----~~~~~v~~~ 168 (447)
..++..+|+|.| .|++|..++..|++.|. +++++|.+.-.... . ..+. -...+++.+
T Consensus 24 ~~L~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~ 102 (212)
T PRK08644 24 EKLKKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAH 102 (212)
T ss_pred HHHhCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 345777899999 79999999999999998 68888875211100 0 0000 011233333
Q ss_pred eccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCccccCC
Q 013226 169 RHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GARFLLTSTSEVYGD 235 (447)
Q Consensus 169 ~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g~r~v~~SS~~v~g~ 235 (447)
...+.+ ..+.++|+||.+.. |...-..+.+.|.+. ++.+|+.+...-|+.
T Consensus 103 ~~~i~~~~~~~~~~~~DvVI~a~D-----------------~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 103 NEKIDEDNIEELFKDCDIVVEAFD-----------------NAETKAMLVETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred eeecCHHHHHHHHcCCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence 333322 23457899887741 222333566777777 788888876554443
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.02 Score=57.42 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=64.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc------------------ccccccc----CCCceEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK------------------DNLIHHF----GNPRFELI 168 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~------------------~~~~~~~----~~~~v~~~ 168 (447)
.++.++|+|.| .|++|.+++..|++.|. +++++|++.-... +...+.+ ...++...
T Consensus 132 ~l~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~ 210 (376)
T PRK08762 132 RLLEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV 210 (376)
T ss_pred HHhcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46778899997 69999999999999998 7888887521100 0000111 11123333
Q ss_pred eccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 169 RHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 169 ~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
...+.+ ..+.++|+||++.. |...-..+-++|.+.++.+|+.+....+|
T Consensus 211 ~~~~~~~~~~~~~~~~D~Vv~~~d-----------------~~~~r~~ln~~~~~~~ip~i~~~~~g~~g 263 (376)
T PRK08762 211 QERVTSDNVEALLQDVDVVVDGAD-----------------NFPTRYLLNDACVKLGKPLVYGAVFRFEG 263 (376)
T ss_pred eccCChHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 333222 23567999998863 11112235678999999999987665444
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.039 Score=54.08 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=60.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
+.++|.|.||||++|+.+++.|.++.+ ++..+... ......+. +....+.+. ++.+..+.++|+||.+++.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-~saG~~~~--~~~~~~~v~--~~~~~~~~~~Dvvf~a~p~- 76 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE-ESAGETLR--FGGKSVTVQ--DAAEFDWSQAQLAFFVAGR- 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-CcCCceEE--ECCcceEEE--eCchhhccCCCEEEECCCH-
Confidence 567899999999999999999998644 66666443 11222221 111123333 3333344679999987641
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
.-...+...+.+.|+++|=.|+..-+
T Consensus 77 -----------------~~s~~~~~~~~~~g~~VIDlS~~fRl 102 (336)
T PRK08040 77 -----------------EASAAYAEEATNAGCLVIDSSGLFAL 102 (336)
T ss_pred -----------------HHHHHHHHHHHHCCCEEEECChHhcC
Confidence 12234555566678888888887744
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.043 Score=51.21 Aligned_cols=114 Identities=19% Similarity=0.141 Sum_probs=74.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEE---EEecCC-CCCccccccccCCCc-eEEEecccccccccCCCEEEEe
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVI---VVDNYF-TGKKDNLIHHFGNPR-FELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~---~l~r~~-~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
...+.+|.|.||+|+||+.|.. |++....|. +-|... +....++.+.-.... ..+.-.|-++.++.+.|+||--
T Consensus 25 ~~~~~KVAvlGAaGGIGQPLSL-LlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP 103 (345)
T KOG1494|consen 25 SQRGLKVAVLGAAGGIGQPLSL-LLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP 103 (345)
T ss_pred ccCcceEEEEecCCccCccHHH-HHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEec
Confidence 3456789999999999999976 556665443 333221 122223322222222 3344456677788999999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
||.. .......++.|.+|..-...|..++.++-. .+.++|
T Consensus 104 AGVP--RKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 104 AGVP--RKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred CCCC--CCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence 9953 333345677999999999999998877653 555555
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.012 Score=53.37 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=46.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..++||+|+|+|. |.+|+++++.|.+.|++|++.+++.... +...... ....+.. .+.....+|+++.+|.
T Consensus 24 ~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~~-~~~~~~~---g~~~v~~--~~l~~~~~Dv~vp~A~ 94 (200)
T cd01075 24 DSLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEAV-ARAAELF---GATVVAP--EEIYSVDADVFAPCAL 94 (200)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHHc---CCEEEcc--hhhccccCCEEEeccc
Confidence 4578999999995 7999999999999999999888753211 1111111 1222222 1112236999998874
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.014 Score=61.08 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=47.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-cccCCCEEEEeccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-ILLEVDQIYHLACPA 190 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~~d~Vih~Ag~~ 190 (447)
.+++++++|+|+ |++|+.++..|++.|++|++++|+.+.. +.+...+.. ..+..+.... .....|+|||+....
T Consensus 376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a-~~la~~l~~---~~~~~~~~~~~~~~~~diiINtT~vG 450 (529)
T PLN02520 376 PLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERA-KELADAVGG---QALTLADLENFHPEEGMILANTTSVG 450 (529)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHHhCC---ceeeHhHhhhhccccCeEEEecccCC
Confidence 356789999997 8999999999999999999988853322 222222211 1122221111 123468899887654
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.041 Score=51.15 Aligned_cols=106 Identities=20% Similarity=0.257 Sum_probs=64.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc----------ccc-------------ccccCCCceEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK----------DNL-------------IHHFGNPRFEL 167 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~----------~~~-------------~~~~~~~~v~~ 167 (447)
.+++.+|+|.| .|++|.+++..|++.|. +++++|.+.-... +.+ ...-....+..
T Consensus 24 ~L~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~ 102 (231)
T PRK08328 24 KLKKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIET 102 (231)
T ss_pred HHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEE
Confidence 45677899999 89999999999999997 7888875432110 000 00001112222
Q ss_pred Eeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCC
Q 013226 168 IRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 235 (447)
Q Consensus 168 ~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~ 235 (447)
....+.+ ..+.++|+||.+.. |...-..+-++|++.++.+|+.++.+.+|.
T Consensus 103 ~~~~~~~~~~~~~l~~~D~Vid~~d-----------------~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~ 157 (231)
T PRK08328 103 FVGRLSEENIDEVLKGVDVIVDCLD-----------------NFETRYLLDDYAHKKGIPLVHGAVEGTYGQ 157 (231)
T ss_pred EeccCCHHHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEeeccCEEE
Confidence 2222222 23456888887652 222222455688889999999888777664
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.025 Score=58.66 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=52.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
...+++|+|+| .|++|..+++.|.++|++|+++++............+...++.+...+... ...++|.||...|+.
T Consensus 13 ~~~~~~v~viG-~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 13 DWQGLRVVVAG-LGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGWR 89 (480)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCcC
Confidence 45678999999 599999999999999999999986543222222222233355555444332 345689999888753
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.014 Score=51.22 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=44.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.+.+++|+|+|+++.+|..+++.|.++|.+|.++.|.. +-....+.+.|+||.+.+
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------------------~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------------------KNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------------------hhHHHHHhhCCEEEEcCC
Confidence 56899999999877789999999999999999988742 112234667899998876
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.032 Score=56.18 Aligned_cols=105 Identities=23% Similarity=0.231 Sum_probs=66.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcccccc-------ccC--------------C--CceEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIH-------HFG--------------N--PRFEL 167 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~-------~~~--------------~--~~v~~ 167 (447)
.++..+|+|.| .|++|.+++..|++.|. +++++|.+.-... ++.. ..+ + .+++.
T Consensus 39 ~L~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~s-NL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~ 116 (392)
T PRK07878 39 RLKNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDES-NLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRL 116 (392)
T ss_pred HHhcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCc-ccccccccChhcCCChHHHHHHHHHHHhCCCcEEEE
Confidence 45677899999 89999999999999998 7777775422111 0100 000 1 22333
Q ss_pred Eeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCC
Q 013226 168 IRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 235 (447)
Q Consensus 168 ~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~ 235 (447)
....+.. ..+.++|+||.+.. |...-..+-++|.+.++.+|+.+....+|.
T Consensus 117 ~~~~i~~~~~~~~~~~~D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~ 171 (392)
T PRK07878 117 HEFRLDPSNAVELFSQYDLILDGTD-----------------NFATRYLVNDAAVLAGKPYVWGSIYRFEGQ 171 (392)
T ss_pred EeccCChhHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 3333332 23567899987652 222223456788888989999887776663
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.04 Score=44.18 Aligned_cols=90 Identities=21% Similarity=0.232 Sum_probs=57.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
.+++++|+|+|| |-+|..=++.|++.|++|+++.... +... ..+.+..-+.. ..+.+.+.||-+.+
T Consensus 4 ~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~----~~~~-----~~i~~~~~~~~-~~l~~~~lV~~at~--- 69 (103)
T PF13241_consen 4 DLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI----EFSE-----GLIQLIRREFE-EDLDGADLVFAATD--- 69 (103)
T ss_dssp --TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE----HHHH-----TSCEEEESS-G-GGCTTESEEEE-SS---
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch----hhhh-----hHHHHHhhhHH-HHHhhheEEEecCC---
Confidence 568999999995 9999999999999999999998643 1101 24555555543 56778898884331
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCc
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~ 230 (447)
+ -.-...+.+.|++.+ .+|+++..
T Consensus 70 ------d--------~~~n~~i~~~a~~~~-i~vn~~D~ 93 (103)
T PF13241_consen 70 ------D--------PELNEAIYADARARG-ILVNVVDD 93 (103)
T ss_dssp ---------------HHHHHHHHHHHHHTT-SEEEETT-
T ss_pred ------C--------HHHHHHHHHHHhhCC-EEEEECCC
Confidence 1 111235677787766 56665553
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.013 Score=56.06 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=45.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
....|++++|.|.+|.+|+.++..|+++|++|+++.|.. ..+ ...+.+.|+||++.|
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t----~~L-----------------~~~~~~aDIvI~AtG 211 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT----QNL-----------------PELVKQADIIVGAVG 211 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc----hhH-----------------HHHhccCCEEEEccC
Confidence 357899999999999999999999999999999887621 111 122367899999986
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.011 Score=50.97 Aligned_cols=75 Identities=23% Similarity=0.359 Sum_probs=47.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
.++++++|+|+ |.+|..+++.|.+.| ++|++.+|+..... ..........+.....| .++.+.++|+||++....
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~Dvvi~~~~~~ 92 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAK-ALAERFGELGIAIAYLD-LEELLAEADLIINTTPVG 92 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHH-HHHHHHhhcccceeecc-hhhccccCCEEEeCcCCC
Confidence 45788999996 999999999999996 78999988643322 21111111101111112 122367899999998653
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.029 Score=51.90 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=50.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~Ag 188 (447)
|+++|.| .|-+|..+++.|.++|++|++++++.....+... .......+.+|.+++. +.++|++|-..+
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~---~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLA---DELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh---hhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 5678887 8999999999999999999999986543332111 1235677778877663 356899996654
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.078 Score=49.18 Aligned_cols=102 Identities=14% Similarity=0.187 Sum_probs=62.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccc-------cccC----------------CCceEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLI-------HHFG----------------NPRFEL 167 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~-------~~~~----------------~~~v~~ 167 (447)
.++..+|+|.| .|++|.++++.|++.|. +++++|.+.-... ++- ...+ ..+++.
T Consensus 8 ~L~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~s-NlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~ 85 (231)
T cd00755 8 KLRNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVS-NLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDA 85 (231)
T ss_pred HHhCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECch-hhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 35667899999 89999999999999997 7888876422110 000 0001 112333
Q ss_pred Eeccccc----ccc-cCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccc
Q 013226 168 IRHDVVE----PIL-LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 232 (447)
Q Consensus 168 ~~~D~~~----~~~-~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v 232 (447)
+...+.. ..+ .++|+||.+.. |+..-..+.+.|++.++.+|...+.+-
T Consensus 86 ~~~~i~~~~~~~l~~~~~D~VvdaiD-----------------~~~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 86 VEEFLTPDNSEDLLGGDPDFVVDAID-----------------SIRAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred eeeecCHhHHHHHhcCCCCEEEEcCC-----------------CHHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 3333321 122 35899998752 222334577889998888887666543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0065 Score=59.58 Aligned_cols=73 Identities=23% Similarity=0.202 Sum_probs=50.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc---c--cCCCEEEEecc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI---L--LEVDQIYHLAC 188 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~--~~~d~Vih~Ag 188 (447)
|.+|||+||+|++|...++-+...|+.++++..+..+.. .+.......-+++.+.|+.+.. . .++|+|+.+.|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC
Confidence 789999999999999999988888977666665433222 3333333334556666655442 2 25999999876
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0084 Score=59.17 Aligned_cols=76 Identities=22% Similarity=0.206 Sum_probs=50.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEeccccccccc----CCCEEEEe
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL----EVDQIYHL 186 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~----~~d~Vih~ 186 (447)
..+|+.|||.||+|++|++.++-+...| ..|+..+.. ...+.........-+++-+.|+.+.... ++|+|+.|
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~--e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~ 232 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSK--EKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDC 232 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEccc--chHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEEC
Confidence 3478899999999999999998777778 455555442 2222222222233466666666555433 69999999
Q ss_pred ccC
Q 013226 187 ACP 189 (447)
Q Consensus 187 Ag~ 189 (447)
+|.
T Consensus 233 vg~ 235 (347)
T KOG1198|consen 233 VGG 235 (347)
T ss_pred CCC
Confidence 984
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.01 Score=53.42 Aligned_cols=67 Identities=22% Similarity=0.176 Sum_probs=44.6
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
++...||+|-||..|+++|.+.||+|++-.|+.+.........+... +.+-..+.+....|+||-..
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~----i~~~~~~dA~~~aDVVvLAV 68 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPL----ITGGSNEDAAALADVVVLAV 68 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccc----cccCChHHHHhcCCEEEEec
Confidence 34455569999999999999999999999886655443333222211 33333444566789999654
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.053 Score=52.52 Aligned_cols=99 Identities=17% Similarity=0.274 Sum_probs=63.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccc-----------------------cCCCceEEEeccc
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHH-----------------------FGNPRFELIRHDV 172 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~-----------------------~~~~~v~~~~~D~ 172 (447)
+|+|.| .|++|.++++.|+..|. +++++|.+.-... ++... -...+++....++
T Consensus 1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~s-NLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i 78 (312)
T cd01489 1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLS-NLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANI 78 (312)
T ss_pred CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchh-hcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 489999 69999999999999997 7788776422211 11000 0112344444455
Q ss_pred cc-----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 173 VE-----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 173 ~~-----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
.+ ..+.++|+||.+.. |...-..+-+.|...++.+|...+.+.+|
T Consensus 79 ~~~~~~~~f~~~~DvVv~a~D-----------------n~~ar~~in~~c~~~~ip~I~~gt~G~~G 128 (312)
T cd01489 79 KDPDFNVEFFKQFDLVFNALD-----------------NLAARRHVNKMCLAADVPLIESGTTGFLG 128 (312)
T ss_pred CCccchHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHCCCCEEEEecCccee
Confidence 43 23467888887652 33334456678888888899888777655
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.041 Score=56.70 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
..+++|+|+| .|..|..+++.|.+.|++|++.|+............+....+.+...+.....+.++|.||...|+.
T Consensus 12 ~~~~~i~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~ 88 (458)
T PRK01710 12 IKNKKVAVVG-IGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMR 88 (458)
T ss_pred hcCCeEEEEc-ccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCC
Confidence 3567899998 8889999999999999999999975432211111112223455655544334456789999987753
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.039 Score=48.00 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=52.6
Q ss_pred CCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEe
Q 013226 107 VPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 107 ~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
.|....++|++|+|.| .|-+|...++.|++.|++|++++. ...+++.. + ..+.+......+..+.+.|.||-+
T Consensus 5 ~P~~l~l~~~~vlVvG-GG~va~rka~~Ll~~ga~V~VIsp---~~~~~l~~-l--~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 5 YPLMFNLHNKVVVIIG-GGKIAYRKASGLKDTGAFVTVVSP---EICKEMKE-L--PYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred cceEEEcCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcC---ccCHHHHh-c--cCcEEEecccChhcCCCceEEEEC
Confidence 5666788999999999 799999999999999999999852 12222222 1 244555555555567778888854
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.27 Score=50.43 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=71.6
Q ss_pred EEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCCCcccCh
Q 013226 120 VTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNP 199 (447)
Q Consensus 120 VtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~~~~~~ 199 (447)
|+||+|.+|..+++.|...|++|+...+....... . ...+++.+++-+.- . ..+
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~------------------~--~~~~~~~~~~d~~~---~---~~~ 96 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAA------------------G--WGDRFGALVFDATG---I---TDP 96 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecCcccccccc------------------C--cCCcccEEEEECCC---C---CCH
Confidence 88889999999999999999999987553221100 0 01134444433210 0 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh--C
Q 013226 200 VKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL--G 277 (447)
Q Consensus 200 ~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~ 277 (447)
++.. .-.......++.+.+ +.+||+++|..... ....|+.+|+..+.+++.++.+. +
T Consensus 97 ~~l~-~~~~~~~~~l~~l~~-~griv~i~s~~~~~-------------------~~~~~~~akaal~gl~rsla~E~~~g 155 (450)
T PRK08261 97 ADLK-ALYEFFHPVLRSLAP-CGRVVVLGRPPEAA-------------------ADPAAAAAQRALEGFTRSLGKELRRG 155 (450)
T ss_pred HHHH-HHHHHHHHHHHhccC-CCEEEEEccccccC-------------------CchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 2211 111222233333322 34999999875421 01359999999999999998875 6
Q ss_pred CcEEEEeec
Q 013226 278 IEARIARIF 286 (447)
Q Consensus 278 i~~~ivRp~ 286 (447)
+.+..+.|+
T Consensus 156 i~v~~i~~~ 164 (450)
T PRK08261 156 ATAQLVYVA 164 (450)
T ss_pred CEEEEEecC
Confidence 788878774
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.075 Score=51.40 Aligned_cols=105 Identities=17% Similarity=0.162 Sum_probs=70.7
Q ss_pred EEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccccc---ccc--CCCceEEEecccccccccCCCEEEEeccCCCC
Q 013226 120 VTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLI---HHF--GNPRFELIRHDVVEPILLEVDQIYHLACPASP 192 (447)
Q Consensus 120 VtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~---~~~--~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~ 192 (447)
|.| +|.||..++..|+..+. ++.++|+..+....... +.. ....+.+...| .+.+.++|+||-+||...
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~--~~~~~daDivVitag~~r- 76 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD--YSDCKDADLVVITAGAPQ- 76 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC--HHHHCCCCEEEECCCCCC-
Confidence 345 69999999999988875 79999986543332211 111 11223333222 357889999999999643
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeC
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 229 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS 229 (447)
....+..+.+..|..-.+.+.+.+++++. .++.+|-
T Consensus 77 -k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 77 -KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 22345667899999999999999988764 6666663
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.073 Score=51.60 Aligned_cols=106 Identities=14% Similarity=0.085 Sum_probs=68.1
Q ss_pred EEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc---ccccccC--CCceEEE-ecccccccccCCCEEEEeccCC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD---NLIHHFG--NPRFELI-RHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~---~~~~~~~--~~~v~~~-~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
|.|+|+ |.+|..++..|+..|. +|+++|++++.... ++.+... .....+. ..| ..++.++|+||.+++..
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d--~~~l~dADiVIit~g~p 77 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND--YEDIAGSDVVVITAGIP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC--HHHhCCCCEEEEecCCC
Confidence 468897 9999999999998876 99999987542211 1111110 1112222 233 24578999999999854
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.. ...+..+.+..|+.-...+++.+.+... .+|.+|
T Consensus 78 ~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 78 RK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred CC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 32 2234445677888888888888887764 445554
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.018 Score=55.32 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=49.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccC--CCceEEEecccccccccCCCEEEEec
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFG--NPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
..+++|+|.| +|+.|++++..|.+.|. +|++++|+.... +.+...+. .....+...+.....+.++|+|||+.
T Consensus 125 ~~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka-~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 125 ASLERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARA-AALADELNARFPAARATAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred ccCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECC
Confidence 4678999999 68899999999999997 799999864432 22322221 11223333333334566799999994
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.074 Score=53.02 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=66.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccc-----------------------cCCCceE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHH-----------------------FGNPRFE 166 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~-----------------------~~~~~v~ 166 (447)
..++..+|+|.| .|++|.+++..|++.|. +++++|.+.-... ++... -...++.
T Consensus 37 ~~l~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~s-NL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~ 114 (370)
T PRK05600 37 ERLHNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVS-NIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVN 114 (370)
T ss_pred HHhcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccc-cccccccCChhHCCCHHHHHHHHHHHHHCCCCeeE
Confidence 346777899999 79999999999999997 8888887522111 01000 0112233
Q ss_pred EEeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 167 LIRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 167 ~~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
.+...+.. ..+.++|+||.|.. |+..-..+-++|.+.++.+|+.+...-+|
T Consensus 115 ~~~~~i~~~~~~~~~~~~DlVid~~D-----------------n~~~r~~in~~~~~~~iP~v~~~~~g~~G 169 (370)
T PRK05600 115 ALRERLTAENAVELLNGVDLVLDGSD-----------------SFATKFLVADAAEITGTPLVWGTVLRFHG 169 (370)
T ss_pred EeeeecCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEecCEE
Confidence 33333332 34567999998762 23333345678888888888887655444
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.045 Score=55.95 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=51.8
Q ss_pred cCCCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc
Q 013226 112 QRKSLRILVTGG----------------AGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175 (447)
Q Consensus 112 ~~~~~~ilVtGa----------------sG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 175 (447)
.++||+||||+| ||-.|.+|++.+..+|++|+++.-... +. ....+.++..+..++
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-----~~---~p~~v~~i~V~ta~e 324 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-----LA---DPQGVKVIHVESARQ 324 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-----CC---CCCCceEEEecCHHH
Confidence 479999999997 789999999999999999999873211 10 122455555544333
Q ss_pred c------ccCCCEEEEeccCCCC
Q 013226 176 I------LLEVDQIYHLACPASP 192 (447)
Q Consensus 176 ~------~~~~d~Vih~Ag~~~~ 192 (447)
. ....|++|++|++.+.
T Consensus 325 M~~av~~~~~~Di~I~aAAVaDy 347 (475)
T PRK13982 325 MLAAVEAALPADIAIFAAAVADW 347 (475)
T ss_pred HHHHHHhhCCCCEEEEeccccce
Confidence 1 1237999999998653
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.028 Score=53.57 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=46.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.+.|++++|+|.++.+|+.++..|.++|++|+++.++.. | ....+.+.|+||..+|.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~--------------------~-l~~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK--------------------D-MASYLKDADVIVSAVGK 211 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch--------------------h-HHHHHhhCCEEEECCCC
Confidence 579999999999999999999999999999999876321 1 22345678999988874
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.12 Score=48.99 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=31.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNY 148 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~ 148 (447)
.++..+|+|.| .|++|.++++.|++.|. +++++|.+
T Consensus 27 kL~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45778899998 89999999999999994 88888764
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.015 Score=55.89 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=49.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
.+.+++++|+|. |.+|+.+++.|...|.+|++.+|+..... ... ......+..+..+..+.+.|+||++.
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~-~~~----~~g~~~~~~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLA-RIT----EMGLIPFPLNKLEEKVAEIDIVINTI 217 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHH----HCCCeeecHHHHHHHhccCCEEEECC
Confidence 567899999995 88999999999999999999998643211 110 11223333333445667899999976
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.058 Score=47.76 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=28.0
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYF 149 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~ 149 (447)
+|+|.| .|.+|.+++..|++.|. +++++|.+.
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 488998 79999999999999998 699988763
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.092 Score=48.80 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=62.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcccccc-------cc----------------CCCceEEEeccc
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIH-------HF----------------GNPRFELIRHDV 172 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~-------~~----------------~~~~v~~~~~D~ 172 (447)
+|+|.| .|++|.++++.|+..|. +++++|.+.-... ++.. .. ...++.....++
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~s-NLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVS-NLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcch-hhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 478888 89999999999999997 7888876422111 0000 00 112333444333
Q ss_pred c------cccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 173 V------EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 173 ~------~~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
. +..+.++|+||.+. .|+..-..+-+.|.+.++.+|..++.+.+|
T Consensus 79 ~~~~~~~~~f~~~~DvVi~a~-----------------Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G 129 (234)
T cd01484 79 GPEQDFNDTFFEQFHIIVNAL-----------------DNIIARRYVNGMLIFLIVPLIESGTEGFKG 129 (234)
T ss_pred ChhhhchHHHHhCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCEEEEcccCCce
Confidence 2 12346688888764 234444556778888888999888766555
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.07 Score=53.69 Aligned_cols=105 Identities=19% Similarity=0.125 Sum_probs=65.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcccccc-------cc----------------CCCceE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIH-------HF----------------GNPRFE 166 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~-------~~----------------~~~~v~ 166 (447)
..++..+|+|.| .|++|.++++.|++.|. +++++|.+.-... ++.. .. ...+++
T Consensus 34 ~~L~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~s-NL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~ 111 (390)
T PRK07411 34 KRLKAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSS-NLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVD 111 (390)
T ss_pred HHHhcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEeccc-ccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEE
Confidence 346777899999 88999999999999997 7777776422111 0100 00 112344
Q ss_pred EEeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 167 LIRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 167 ~~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
.+...+.. ..+.++|+||.|.. |...-..+-++|.+.++.+|+.+...-+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~p~v~~~~~g~~g 166 (390)
T PRK07411 112 LYETRLSSENALDILAPYDVVVDGTD-----------------NFPTRYLVNDACVLLNKPNVYGSIFRFEG 166 (390)
T ss_pred EEecccCHHhHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEccCEE
Confidence 44444433 23567999998763 22222235578888888888877666554
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.019 Score=55.04 Aligned_cols=75 Identities=16% Similarity=0.043 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCC-CceEEEec-ccccccccCCCEEEEeccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGN-PRFELIRH-DVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~-D~~~~~~~~~d~Vih~Ag~ 189 (447)
.++++++|.| +|+.|+.++..|.+.|. +|++++|+.++. +.+...+.. ..+..+.. +.....+.++|+|||+...
T Consensus 123 ~~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka-~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 123 LAGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKL-SRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred cCCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 4678999998 69999999999999997 799998864332 333222211 11111111 1122344678999998754
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.13 Score=49.96 Aligned_cols=219 Identities=17% Similarity=0.222 Sum_probs=109.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPV 193 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~ 193 (447)
+.+|.|.||||++|..|++.|.++.+ ++..+..+... .. +..+..+.++|+||-+...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~------------~~-----~~~~~~~~~~DvvFlalp~---- 60 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK------------DA-----AARRELLNAADVAILCLPD---- 60 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC------------cc-----cCchhhhcCCCEEEECCCH----
Confidence 46799999999999999998888864 55554432111 00 1222344578999976531
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc------ccCCCCCCC-CCCCcCCCCCCCCCCChHHHHHHHHH
Q 013226 194 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE------VYGDPLQHP-QAETYWGNVNPIGVRSCYDEGKRTAE 266 (447)
Q Consensus 194 ~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~------v~g~~~~~~-~~e~~~~~~~~~~~~~~Y~~sK~~~E 266 (447)
.-...+...+.+.|+++|=.|+.. +||-+.-.+ ..+. ...........+|..+-..+-
T Consensus 61 --------------~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~-i~~~~~IanPgC~~Ta~~laL 125 (313)
T PRK11863 61 --------------DAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRER-IAAAKRVANPGCYPTGAIALL 125 (313)
T ss_pred --------------HHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHH-hhcCCeEEcCCcHHHHHHHHH
Confidence 012234555556788999888876 343222110 0000 001122333477876665544
Q ss_pred HHHHHHHhhhCCc---EEEE-eeccccCCCCccCCCchHHHHH-HHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 267 TLTMDYHRGLGIE---ARIA-RIFNTYGPRMCIDDGRVVSNFV-AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 267 ~~~~~~~~~~~i~---~~iv-Rp~~i~Gp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
.=+.+ ...++ .+++ --+.+-|.+... ...+. ......+.+..|.-+. .--|...+.+.+-....
T Consensus 126 ~PL~~---~~li~~~~~i~i~a~SG~SGAG~~~-----~~~~~~~~~~~~~n~~~Y~~~~---~HrH~pEi~~~l~~~~~ 194 (313)
T PRK11863 126 RPLVD---AGLLPADYPVSINAVSGYSGGGKAM-----IAAYEAAPDGKAPAFRLYGLGL---AHKHLPEMQAHAGLARR 194 (313)
T ss_pred HHHHH---cCCcccCceEEEEEccccccCCccc-----hHHHhhhhhhhccCeeeccCCc---CCcchHHHHHHhccccC
Confidence 43322 22221 1222 223334444321 11111 0111122233333320 12344455444422111
Q ss_pred ---C----C-CCC---cEEecC---CCccCHHHHHHHHHHHhCCCCcEEecCC
Q 013226 342 ---G----D-HVG---PFNLGN---PGEFTMLELAEVVQEIIDRNARIEFRPN 380 (447)
Q Consensus 342 ---~----~-~~g---~~~i~~---~~~~s~~el~~~i~~~~g~~~~~~~~~~ 380 (447)
. + ..| +.++.- .+.++..|+.+.+++.++.+.-+++.+.
T Consensus 195 ~~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~~~ 247 (313)
T PRK11863 195 PIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVAPL 247 (313)
T ss_pred cEEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEecC
Confidence 1 1 124 455543 5678999999999999987766666543
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.13 Score=47.27 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=58.8
Q ss_pred CCCCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEE
Q 013226 105 GKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIY 184 (447)
Q Consensus 105 ~~~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vi 184 (447)
...|.....++++|||+| .|-++..=++.|++.|++|+++.-. ..+++.......++.+...+.....+.+++.||
T Consensus 15 ~~~pi~l~~~~~~VLVVG-GG~VA~RK~~~Ll~~gA~VtVVap~---i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LVi 90 (223)
T PRK05562 15 KYMFISLLSNKIKVLIIG-GGKAAFIKGKTFLKKGCYVYILSKK---FSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIV 90 (223)
T ss_pred CEeeeEEECCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCC---CCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEE
Confidence 345666778899999999 7889988889999999999998642 223333333445788888777777788888888
Q ss_pred Eec
Q 013226 185 HLA 187 (447)
Q Consensus 185 h~A 187 (447)
-+.
T Consensus 91 aAT 93 (223)
T PRK05562 91 IAT 93 (223)
T ss_pred ECC
Confidence 553
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.026 Score=54.59 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=49.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
...+++++|+| .|.+|+.++..|.+.|.+|++.+|+.... .... . .....+..+.....+.+.|+||+++
T Consensus 149 ~l~g~kvlViG-~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~-~~~~-~---~G~~~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 149 TIHGSNVLVLG-FGRTGMTLARTLKALGANVTVGARKSAHL-ARIT-E---MGLSPFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHH-H---cCCeeecHHHHHHHhCCCCEEEECC
Confidence 34688999999 58899999999999999999999864321 1111 1 1233333333445567899999986
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.038 Score=54.35 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.|.+|+|+|++|.+|..+++.+...|.+|++++++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 678999999999999999998888899999888753
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.039 Score=52.95 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=46.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.++.||+|.|.|.+|.+|+.++..|+++|++|++..+... + ........|+||-+.|.
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------------~-l~e~~~~ADIVIsavg~ 212 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------------D-AKALCRQADIVVAAVGR 212 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------------C-HHHHHhcCCEEEEecCC
Confidence 4679999999999999999999999999999999976422 1 12234568999988873
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.12 Score=49.95 Aligned_cols=97 Identities=21% Similarity=0.282 Sum_probs=53.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCe---EEEEecCCCCCccccccccCCCceEEEecc-cccccccCCCEEEEeccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDS---VIVVDNYFTGKKDNLIHHFGNPRFELIRHD-VVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~---V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D-~~~~~~~~~d~Vih~Ag~~ 190 (447)
+++|.|.|+||-+|+.+++.|.++... +.++... ......... +....+...+ + .....+.++|++|.++|-.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~-rSaG~~~~~-f~~~~~~v~~-~~~~~~~~~~~Divf~~ag~~ 77 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASA-RSAGKKYIE-FGGKSIGVPE-DAADEFVFSDVDIVFFAAGGS 77 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecc-cccCCcccc-ccCccccCcc-ccccccccccCCEEEEeCchH
Confidence 368999999999999999999997542 3333321 111111011 1111111111 1 1112344799999999721
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccc
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 232 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v 232 (447)
-+..+...+.++|+-+|=-||..-
T Consensus 78 ------------------~s~~~~p~~~~~G~~VIdnsSa~R 101 (334)
T COG0136 78 ------------------VSKEVEPKAAEAGCVVIDNSSAFR 101 (334)
T ss_pred ------------------HHHHHHHHHHHcCCEEEeCCcccc
Confidence 113556677788854444444443
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.15 Score=50.10 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=59.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-CCCe---EEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMD-RGDS---VIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~-~G~~---V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
++++|.|.||||++|+.+++.|.+ .... +..+.... .....+ .+....+.+...|. ..+.++|+||-+++.
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~-saGk~~--~~~~~~l~v~~~~~--~~~~~~Divf~a~~~ 78 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKR-SAGKTV--QFKGREIIIQEAKI--NSFEGVDIAFFSAGG 78 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcc-cCCCCe--eeCCcceEEEeCCH--HHhcCCCEEEECCCh
Confidence 457899999999999999998885 4555 55554321 111222 11222344444442 345689999987741
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
. -...+...+.+.|+.+|=.||..-+
T Consensus 79 ~------------------~s~~~~~~~~~~G~~VID~Ss~fR~ 104 (347)
T PRK06728 79 E------------------VSRQFVNQAVSSGAIVIDNTSEYRM 104 (347)
T ss_pred H------------------HHHHHHHHHHHCCCEEEECchhhcC
Confidence 1 1234555566678788888887654
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.034 Score=55.61 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..++|.|.||.|.+|..++..|.+.|++|++.+|+.. +..+..+.++|+||-+..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~aDlVilavP 151 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILADAGMVIVSVP 151 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhcCCEEEEeCc
Confidence 5578999999999999999999999999999987421 111234567899998763
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.023 Score=54.12 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=65.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEE-ecccccccccCCCEEEEeccCCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELI-RHDVVEPILLEVDQIYHLACPASP 192 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~-~~D~~~~~~~~~d~Vih~Ag~~~~ 192 (447)
.|+++.|+|+.| ||.--++.-.+-|++|+++++...++++.+.......-++.. +.|..+....-.|.++|++-...
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a- 258 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLA- 258 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeecc-
Confidence 689999999888 998888877778999999999765555555444334345555 66776666655666666653110
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
..+ ...+++.++..| ++|+++-..
T Consensus 259 ----~~~----------~~~~~~~lk~~G-t~V~vg~p~ 282 (360)
T KOG0023|consen 259 ----EHA----------LEPLLGLLKVNG-TLVLVGLPE 282 (360)
T ss_pred ----ccc----------hHHHHHHhhcCC-EEEEEeCcC
Confidence 110 113455565544 888887643
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.089 Score=50.95 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=57.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccC----CCceEEEecccccccccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFG----NPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+++|.|.||+|+-|.+|++.|..+.+ ++..+..+.. ....+..... ..+..+...|.......++|+||-+-..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~-~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRER-AGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhh-cCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 56899999999999999999998865 6655544321 2222221111 1123333334333345569999977521
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
. ....++....+.|+++|=+|...
T Consensus 81 g------------------~s~~~v~~l~~~g~~VIDLSadf 104 (349)
T COG0002 81 G------------------VSAELVPELLEAGCKVIDLSADF 104 (349)
T ss_pred h------------------hHHHHHHHHHhCCCeEEECCccc
Confidence 0 11234444555677888888766
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.21 Score=41.19 Aligned_cols=30 Identities=23% Similarity=0.573 Sum_probs=26.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhC-CCeEEEEe
Q 013226 117 RILVTGGAGFVGSHLVDRLMDR-GDSVIVVD 146 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~ 146 (447)
++.|+|++|.+|..++..|.+. +.++..+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~ 31 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALA 31 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEE
Confidence 4789999999999999999994 77888873
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.029 Score=56.77 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=52.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
.+.+++|+|.| +|.+|+.++..|.+.|. +|+++.|+.. +.+.+...++. ...+..|-....+...|+||++.+..
T Consensus 178 ~l~~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~-ra~~La~~~~~--~~~~~~~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 178 NISSKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIE-KAQKITSAFRN--ASAHYLSELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred CccCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHH-HHHHHHHHhcC--CeEecHHHHHHHhccCCEEEECcCCC
Confidence 35788999999 59999999999999996 6888888643 22333332221 23444454455677899999998743
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.017 Score=51.72 Aligned_cols=34 Identities=38% Similarity=0.557 Sum_probs=27.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
|+|.|.| .|++|..++..|++.|++|+++|.+..
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 6899997 999999999999999999999998643
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.037 Score=50.97 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=31.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
|+|.|+||+|.+|..++..|.+.|++|++.+|+.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~ 35 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLE 35 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 57999999999999999999999999999988643
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.063 Score=52.26 Aligned_cols=36 Identities=36% Similarity=0.397 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+.+++|+|++|.+|..+++.+...|.+|+++.+..
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~ 197 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP 197 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 567899999999999999999999999999988753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.23 Score=49.02 Aligned_cols=93 Identities=20% Similarity=0.218 Sum_probs=54.2
Q ss_pred CeEEEEcCCChhHHHHHHHHH-hCCC---eEEEEecCCCCCccccccccCCCceEEEecccccc-cccCCCEEEEeccCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLM-DRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-ILLEVDQIYHLACPA 190 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~-~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~~d~Vih~Ag~~ 190 (447)
|+|.|.||||-+|+.+++.|. ++.. +++.+....... ... .......... ++.+. .+.++|++|.++|-
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g-~~~--~f~~~~~~v~--~~~~~~~~~~vDivffa~g~- 74 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQ-AAP--SFGGTTGTLQ--DAFDIDALKALDIIITCQGG- 74 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCC-CcC--CCCCCcceEE--cCcccccccCCCEEEEcCCH-
Confidence 478999999999999999999 5555 344443321111 111 1112222222 33332 56789999999862
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCcc
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSE 231 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~ 231 (447)
+ .+..+...+.++|. .+|=-||..
T Consensus 75 ---------------~--~s~~~~p~~~~aG~~~~VIDnSSa~ 100 (366)
T TIGR01745 75 ---------------D--YTNEIYPKLRESGWQGYWIDAASSL 100 (366)
T ss_pred ---------------H--HHHHHHHHHHhCCCCeEEEECChhh
Confidence 1 23456667778884 344444443
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.03 Score=49.83 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=47.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.|++|.|.| .|-||+.+++.|..-|.+|++.+|....... . ....+ ..+-.++.+..+|+|+.+..
T Consensus 32 ~~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~----~~~~~---~~~~l~ell~~aDiv~~~~p 100 (178)
T PF02826_consen 32 RELRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEG-A----DEFGV---EYVSLDELLAQADIVSLHLP 100 (178)
T ss_dssp S-STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHH-H----HHTTE---EESSHHHHHHH-SEEEE-SS
T ss_pred cccCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhh-c----ccccc---eeeehhhhcchhhhhhhhhc
Confidence 567899999998 8999999999999999999999986432210 0 00122 33345556777999997765
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.11 Score=53.89 Aligned_cols=75 Identities=24% Similarity=0.207 Sum_probs=51.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
....+++|+|.| .|..|..+++.|.+.|++|++.|+..... .++ .....+.+...+-....+.++|.||...|+.
T Consensus 11 ~~~~~~~v~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~~~~-~~~---l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~ 85 (473)
T PRK00141 11 PQELSGRVLVAG-AGVSGRGIAAMLSELGCDVVVADDNETAR-HKL---IEVTGVADISTAEASDQLDSFSLVVTSPGWR 85 (473)
T ss_pred ccccCCeEEEEc-cCHHHHHHHHHHHHCCCEEEEECCChHHH-HHH---HHhcCcEEEeCCCchhHhcCCCEEEeCCCCC
Confidence 345778899999 89999999999999999999998753321 111 1112445544422223345789999988764
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.12 Score=53.14 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=49.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 187 (447)
|+|+|+|+ |.+|+.+++.|.++|++|++++++..... .+. ....+.++.+|.++.. +.++|.||-+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~-~~~---~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLR-RLQ---DRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHH-HHH---hhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 57999996 99999999999999999999988543211 111 1135677778876542 45789888765
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.12 Score=47.07 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEE
Q 013226 106 KVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYH 185 (447)
Q Consensus 106 ~~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih 185 (447)
.+|...++.+|+|+|+| +|-+|..=++.|++.|.+|+++.-.. .+++.......++.+++.+.....+.+++.||-
T Consensus 3 ~lPl~~~l~~k~VlvvG-gG~va~rKa~~ll~~ga~v~Vvs~~~---~~el~~~~~~~~i~~~~~~~~~~~~~~~~lvia 78 (210)
T COG1648 3 YLPLFLDLEGKKVLVVG-GGSVALRKARLLLKAGADVTVVSPEF---EPELKALIEEGKIKWIEREFDAEDLDDAFLVIA 78 (210)
T ss_pred ccceEEEcCCCEEEEEC-CCHHHHHHHHHHHhcCCEEEEEcCCc---cHHHHHHHHhcCcchhhcccChhhhcCceEEEE
Confidence 35666788999999999 78899999999999999999987543 344444444555666664444444555666663
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 221 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g 221 (447)
+.. + -.-...+.++|++.+
T Consensus 79 At~---------d--------~~ln~~i~~~a~~~~ 97 (210)
T COG1648 79 ATD---------D--------EELNERIAKAARERR 97 (210)
T ss_pred eCC---------C--------HHHHHHHHHHHHHhC
Confidence 321 1 112236778888766
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.21 Score=51.25 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc-cccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK-DNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
+.+++|+|+|. |..|..+++.|.++|++|.+.+....... ..+... ..++.+......+....++|.||...|+.
T Consensus 3 ~~~~~~~v~G~-g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 3 FQNKKILVAGL-GGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKM--FDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 35789999996 68999999999999999999987543211 111110 12455555443333446799999988864
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.037 Score=61.78 Aligned_cols=71 Identities=27% Similarity=0.319 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC-Ce-------------EEEEecCCCCCccccccccCCCceEEEecccccc----
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG-DS-------------VIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP---- 175 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G-~~-------------V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~---- 175 (447)
++++|+|.| +|+||+..++.|++.. ++ |.+.++..... +.+.... .+++.+..|+.+.
T Consensus 568 ~~~rIlVLG-AG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~--~~~~~v~lDv~D~e~L~ 643 (1042)
T PLN02819 568 KSQNVLILG-AGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGI--ENAEAVQLDVSDSESLL 643 (1042)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhc--CCCceEEeecCCHHHHH
Confidence 567899999 5999999999998863 23 66666543221 1221111 2445566655443
Q ss_pred -cccCCCEEEEecc
Q 013226 176 -ILLEVDQIYHLAC 188 (447)
Q Consensus 176 -~~~~~d~Vih~Ag 188 (447)
.+.++|+||++..
T Consensus 644 ~~v~~~DaVIsalP 657 (1042)
T PLN02819 644 KYVSQVDVVISLLP 657 (1042)
T ss_pred HhhcCCCEEEECCC
Confidence 3467999999975
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.085 Score=50.66 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=45.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEe-cCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVD-NYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~-r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.++.||+|.|.|-++.+|+.++..|+++|++|++.. |.. | .++.....|+||-+.|
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------------~-l~e~~~~ADIVIsavg 210 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------------D-LPAVCRRADILVAAVG 210 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------------C-HHHHHhcCCEEEEecC
Confidence 357899999999999999999999999999999985 421 0 1334556899998886
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.041 Score=56.26 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=45.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
|+|.|+||+|.+|..++..|.+.|++|++.+|+..... ...... .+.+ .+.....+.++|+||-+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~-~~a~~~---gv~~--~~~~~e~~~~aDvVIlavp 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGK-EVAKEL---GVEY--ANDNIDAAKDADIVIISVP 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHH-HHHHHc---CCee--ccCHHHHhccCCEEEEecC
Confidence 57999999999999999999999999999998643211 111111 1211 1122234567899998763
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.08 Score=46.04 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=30.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
++.||+++|.|.+..+|+.|+..|.++|+.|++....
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~ 69 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK 69 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC
Confidence 5789999999999999999999999999999997653
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.12 Score=43.95 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=45.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.+++||+|.|.|.+.-+|+.++..|.++|.+|++.+++.. | .++.....|+||-..|.
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~--------------------~-l~~~v~~ADIVvsAtg~ 81 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI--------------------Q-LQSKVHDADVVVVGSPK 81 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc--------------------C-HHHHHhhCCEEEEecCC
Confidence 4678999999999999999999999999999999875321 1 11245668888877763
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.088 Score=52.67 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=49.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.||+|.|.| .|-||+.+++.|..-|.+|++.+|..... ..... ..+. ..+-.++.+..+|+|+.+..
T Consensus 188 ~~L~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~--~~~~~---~g~~--~~~~l~ell~~aDvV~l~lP 257 (385)
T PRK07574 188 YDLEGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPE--EVEQE---LGLT--YHVSFDSLVSVCDVVTIHCP 257 (385)
T ss_pred eecCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCch--hhHhh---cCce--ecCCHHHHhhcCCEEEEcCC
Confidence 457899999999 79999999999999999999998854211 11111 1121 22335566788999987764
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.23 Score=47.95 Aligned_cols=217 Identities=14% Similarity=0.192 Sum_probs=108.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCCCc
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHY 195 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~~ 195 (447)
+|.|.|++|+.|.+|++.|.++.+ ++..+.-.. . ++ ..| .+..+.++|+||-+.+.
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~--~------------~~--~~~-~~~~~~~~D~vFlalp~------ 59 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR--R------------KD--AAE-RAKLLNAADVAILCLPD------ 59 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc--c------------cC--cCC-HhHhhcCCCEEEECCCH------
Confidence 699999999999999999998754 555554221 1 00 011 12334579999977631
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc------ccCCCCCCC-CCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 196 KFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE------VYGDPLQHP-QAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 196 ~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~------v~g~~~~~~-~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
.-...++..+.+.|+++|=.|+.. +||-+.-.+ ..|. .....-.....+|..+-..+-.=
T Consensus 60 ------------~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~-i~~a~lIAnPgC~aTa~~LaL~P 126 (310)
T TIGR01851 60 ------------DAAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREK-IRNSKRIANPGCYPTGFIALMRP 126 (310)
T ss_pred ------------HHHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHh-hccCCEEECCCCHHHHHHHHHHH
Confidence 012244555556788899888765 344322100 0010 00112233347777665554433
Q ss_pred HHHHHhhhCCc---EEEE-eeccccCCCCccCCCchHHHHHHHH---HhCCCeEEecCCCeeEccccHHHHHHHHHHH--
Q 013226 269 TMDYHRGLGIE---ARIA-RIFNTYGPRMCIDDGRVVSNFVAQA---LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL-- 339 (447)
Q Consensus 269 ~~~~~~~~~i~---~~iv-Rp~~i~Gp~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~-- 339 (447)
+.+ ...++ .+++ --+.+-|-+.. ....+..+. -..+.+..|+-+ ..--|...+.+.+-..
T Consensus 127 L~~---~~li~~~~~~~~~a~SG~SGAGr~-----~~~~l~~q~~~~e~~~~~~~Y~~~---~~HrH~pEi~q~l~~~~~ 195 (310)
T TIGR01851 127 LVE---AGILPADFPITINAVSGYSGGGKA-----MIADYEQGSADNPSLQPFRIYGLA---LTHKHLPEMRVHSGLALP 195 (310)
T ss_pred HHH---cCCccccceEEEEeccccCccChh-----hhHHhhhcccchhhccCceeccCC---CCCCcHHHHHHHhCCCCC
Confidence 322 22221 1222 22333344321 112222111 112234444332 0234666666555321
Q ss_pred -HcCC-----CCC---cEEecC---CCccCHHHHHHHHHHHhCCCCcEEecCC
Q 013226 340 -MEGD-----HVG---PFNLGN---PGEFTMLELAEVVQEIIDRNARIEFRPN 380 (447)
Q Consensus 340 -l~~~-----~~g---~~~i~~---~~~~s~~el~~~i~~~~g~~~~~~~~~~ 380 (447)
.-.+ ..| +.++.- .+.++-.|+.+.+++.+..+.-++..+.
T Consensus 196 v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~epfVrv~~~ 248 (310)
T TIGR01851 196 PIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGEQFVRVAPL 248 (310)
T ss_pred EEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCCCCcEEEecC
Confidence 1111 124 344433 5678899999999999977766666543
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.04 Score=55.97 Aligned_cols=72 Identities=19% Similarity=0.434 Sum_probs=49.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+.+++|+|+|+ |.+|..+++.|.+.| .+|++++|+.... ..+...++. ..+..+-....+.++|+||.+.+.
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra-~~la~~~g~---~~i~~~~l~~~l~~aDvVi~aT~s 250 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERA-EDLAKELGG---EAVKFEDLEEYLAEADIVISSTGA 250 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHcCC---eEeeHHHHHHHHhhCCEEEECCCC
Confidence 57789999995 999999999999999 6899998864322 222222221 233333344556789999998763
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.21 Score=50.74 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=31.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.|+|.|.| .|++|..++..|+++|++|+++++++.
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 47899998 899999999999999999999998644
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.21 Score=49.28 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=31.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
|+|.|.| +||+|......|++.||+|+++|.++.
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 6788998 999999999999999999999998644
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.16 Score=54.83 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=64.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCC--cccc---ccccC----------------CCceEE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGK--KDNL---IHHFG----------------NPRFEL 167 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~--~~~~---~~~~~----------------~~~v~~ 167 (447)
..++..+|+|.|. | +|++++..|++.|. +++++|.+.-.. -... ...++ ..+++.
T Consensus 103 ~~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 103 ERLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 3467889999999 7 99999999999994 888887642211 0000 00001 124445
Q ss_pred Eeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCc
Q 013226 168 IRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230 (447)
Q Consensus 168 ~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~ 230 (447)
+...+.. ..+.++|+||.|.- |+..=..+.++|.+.++.+|+-++.
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D-----------------~~~~R~~ln~~a~~~~iP~i~~~~~ 230 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECD-----------------SLDVKVLLREAARARRIPVLMATSD 230 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5544433 23567999998862 3333334567889999888887753
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.24 Score=38.19 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=30.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEec
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDN 147 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r 147 (447)
....+++++|.|. |.+|+.++..|.+. +.+|.+.+|
T Consensus 19 ~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3467889999997 99999999999998 567777765
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.28 Score=49.66 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=61.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC------eEEEEecCCCCCcccccc-------ccC----------------CCceEE
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD------SVIVVDNYFTGKKDNLIH-------HFG----------------NPRFEL 167 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~------~V~~l~r~~~~~~~~~~~-------~~~----------------~~~v~~ 167 (447)
+|+|+| .|+||.++++.|+..|. +++++|.+.-... ++.. ..+ ..+++.
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~S-NLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a 78 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKS-NLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITA 78 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCcccc-ccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence 488998 89999999999999997 7888876422111 1100 000 112333
Q ss_pred Eecccc--------cccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 168 IRHDVV--------EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 168 ~~~D~~--------~~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
....+. +..+.++|+||++. -|+..-..+-+.|...++.+|..++.+.+|
T Consensus 79 ~~~~v~~~~~~~~~~~f~~~~DvVi~al-----------------Dn~~aR~~vn~~C~~~~iPli~~gt~G~~G 136 (435)
T cd01490 79 LQNRVGPETEHIFNDEFWEKLDGVANAL-----------------DNVDARMYVDRRCVYYRKPLLESGTLGTKG 136 (435)
T ss_pred EecccChhhhhhhhHHHhcCCCEEEECC-----------------CCHHHHHHHHHHHHHhCCCEEEEeccccee
Confidence 333221 12235688888764 244444567788888888888888776555
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.53 Score=45.51 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=60.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
.++|.| ||||-+|+.+.+.|.+++. +++++..........+ .++. -++.-.++.+..+.++|++|. ||-.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i--~f~g--~~~~V~~l~~~~f~~vDia~f-ag~~- 75 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGI--RFNN--KAVEQIAPEEVEWADFNYVFF-AGKM- 75 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEE--EECC--EEEEEEECCccCcccCCEEEE-cCHH-
Confidence 357899 9999999999999999986 4555543211111111 1122 233344555667789999998 7621
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
........+.+.|+.+|=-||..-+
T Consensus 76 -----------------~s~~~ap~a~~aG~~VIDnSsa~Rm 100 (322)
T PRK06901 76 -----------------AQAEHLAQAAEAGCIVIDLYGICAA 100 (322)
T ss_pred -----------------HHHHHHHHHHHCCCEEEECChHhhC
Confidence 2234555677788888878877644
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.089 Score=58.97 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=69.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc----------------------ccccccCCCceEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD----------------------NLIHHFGNPRFELI 168 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~----------------------~~~~~~~~~~v~~~ 168 (447)
.+...+|||.| .|++|.++++.|...|. +|+++|...-.... .+.+.-....++..
T Consensus 21 kL~~s~VLIiG-~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~ 99 (1008)
T TIGR01408 21 KMAKSNVLISG-MGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSS 99 (1008)
T ss_pred HHhhCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEe
Confidence 45667899999 57899999999999997 77777754211100 00000012345556
Q ss_pred ecccccccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC--CeEEEEeCccccC
Q 013226 169 RHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYG 234 (447)
Q Consensus 169 ~~D~~~~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--~r~v~~SS~~v~g 234 (447)
..++.+..+.++|+||.+- .|......+-++|++.+ +.||+.++.+.||
T Consensus 100 ~~~l~~e~l~~fdvVV~t~-----------------~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G 150 (1008)
T TIGR01408 100 SVPFNEEFLDKFQCVVLTE-----------------MSLPLQKEINDFCHSQCPPIAFISADVRGLFG 150 (1008)
T ss_pred cccCCHHHHcCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCeEEEEEeecceEE
Confidence 6666666777899999753 12223345678999999 6899988877666
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.047 Score=47.34 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=44.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..+.||+++|+| -|.+|+-+++.|...|.+|++.+.++-..-+... ..++... .++++...|++|.+.|.
T Consensus 19 ~~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~-----dGf~v~~---~~~a~~~adi~vtaTG~ 88 (162)
T PF00670_consen 19 LMLAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEIDPIRALQAAM-----DGFEVMT---LEEALRDADIFVTATGN 88 (162)
T ss_dssp S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH-----TT-EEE----HHHHTTT-SEEEE-SSS
T ss_pred eeeCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh-----cCcEecC---HHHHHhhCCEEEECCCC
Confidence 356899999999 9999999999999999999999885432222211 2344332 44567788999988774
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.12 Score=48.32 Aligned_cols=35 Identities=31% Similarity=0.331 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+.+|+|+|+++ +|..+++.+...|.+|++++++.
T Consensus 134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCH
Confidence 577899999999 99999999988999999998753
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.3 Score=49.58 Aligned_cols=76 Identities=18% Similarity=0.078 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
..+|+|+|.| -|-=|..+++.|.++|++|++.|.++........ ......+++..+...+.....+|+||-+=|+.
T Consensus 5 ~~~~kv~V~G-LG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 5 FQGKKVLVLG-LGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDDEDLAEFDLVVKSPGIP 80 (448)
T ss_pred ccCCEEEEEe-cccccHHHHHHHHHCCCeEEEEcCCCCccchhhh-hhhccCceeecCccchhccccCCEEEECCCCC
Confidence 3489999999 7888999999999999999999976544111111 12234556665554446677799999877653
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.11 Score=50.64 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCC-CceEEEecccccccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN-PRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.|++|+|+|.. ++|...++.+...|++|++++|+..+. +....++. .-++..+.|..++.-..+|.+|.+++
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~--e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKL--ELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHH--HHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 57899999965 999999988888999999999964432 22222222 12222223444333333899999985
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.077 Score=54.86 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=46.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
...+++++|+| +|++|+.++..|.+.|++|++.+|+.... +.+..... ......+... .+.++|+||||...
T Consensus 329 ~~~~k~vlIiG-aGgiG~aia~~L~~~G~~V~i~~R~~~~~-~~la~~~~---~~~~~~~~~~-~l~~~DiVInatP~ 400 (477)
T PRK09310 329 PLNNQHVAIVG-AGGAAKAIATTLARAGAELLIFNRTKAHA-EALASRCQ---GKAFPLESLP-ELHRIDIIINCLPP 400 (477)
T ss_pred CcCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc---cceechhHhc-ccCCCCEEEEcCCC
Confidence 45778999999 58999999999999999999888854322 22211111 1112111111 24578999999753
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.43 Score=45.36 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=27.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDN 147 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r 147 (447)
++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 58999999999999999999874 678777543
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.12 Score=49.26 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=46.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.++.|++++|+|-+..+|+.|+..|+++|++|++..+... | +.....+.|+||..+|.
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~--------------------~-l~~~~~~ADIvi~avG~ 212 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK--------------------N-LRHHVRNADLLVVAVGK 212 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC--------------------C-HHHHHhhCCEEEEcCCC
Confidence 3578999999999999999999999999999999875311 1 12334568999988873
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.07 Score=55.48 Aligned_cols=74 Identities=24% Similarity=0.326 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
+.+++|+|+|+ |.+|+.+++.|...|. +|++++|+.... +.+...+....+.+...+-....+.++|+||.+.+
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era-~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~ 338 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERV-AALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS 338 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC
Confidence 56889999996 9999999999999997 688988864332 22322222222334444444456778999998765
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.06 Score=54.83 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=49.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..+++|+|+| +|.+|..++..|...|. +|++++|+.... ..+...++ .+.+..+.....+.++|+||.+.+.
T Consensus 180 ~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra-~~la~~~g---~~~~~~~~~~~~l~~aDvVI~aT~s 252 (423)
T PRK00045 180 LSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERA-EELAEEFG---GEAIPLDELPEALAEADIVISSTGA 252 (423)
T ss_pred ccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHHcC---CcEeeHHHHHHHhccCCEEEECCCC
Confidence 5778999998 59999999999999997 788888854322 22222222 1233333334456789999998763
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.075 Score=50.71 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=48.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCc--eEEEecccccccccCCCEEEEecc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPR--FELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~--v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..++++++|.| +|+.+++++..|++.|. +|+++.|..+. .+++...+.... +.....+..+... ..|+|||+-.
T Consensus 123 ~~~~~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~r-a~~La~~~~~~~~~~~~~~~~~~~~~~-~~dliINaTp 199 (283)
T COG0169 123 DVTGKRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRER-AEELADLFGELGAAVEAAALADLEGLE-EADLLINATP 199 (283)
T ss_pred ccCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHH-HHHHHHHhhhccccccccccccccccc-ccCEEEECCC
Confidence 34678999999 89999999999999995 89999986443 233333322211 1222222111111 5899999876
Q ss_pred CC
Q 013226 189 PA 190 (447)
Q Consensus 189 ~~ 190 (447)
..
T Consensus 200 ~G 201 (283)
T COG0169 200 VG 201 (283)
T ss_pred CC
Confidence 43
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.16 Score=49.42 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+.+++|+|+++.+|..+++.+...|++|++++++.
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~ 201 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSE 201 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 567899999999999999999999999999988753
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.13 Score=46.50 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=26.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVI 143 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~ 143 (447)
|++.|.||+|.+|+.+++.|.+.|+.|.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE
Confidence 5799999999999999999999999986
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.12 Score=49.25 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=45.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.++.||+|.|.|-||.+|+.++..|+++|++|++.... . . | ........|+||-+.|.
T Consensus 154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-t---~----------------~-l~~~~~~ADIVI~avg~ 211 (284)
T PRK14179 154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-T---R----------------N-LAEVARKADILVVAIGR 211 (284)
T ss_pred CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-C---C----------------C-HHHHHhhCCEEEEecCc
Confidence 45799999999999999999999999999999987221 1 1 1 12335678999988874
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.049 Score=53.60 Aligned_cols=35 Identities=23% Similarity=0.107 Sum_probs=30.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYF 149 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~ 149 (447)
+.+|+|+||+|.+|..+++.+...|. +|++++++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~ 190 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSD 190 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence 37899999999999999988888898 799987753
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.21 Score=49.63 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEecccccccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.+.+|+|.| +|.||..+++.+...|.+|++++.+...+. .....++... ++..+.+.......++|+||.+.|
T Consensus 183 ~g~~VlV~G-~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~-~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g 256 (360)
T PLN02586 183 PGKHLGVAG-LGGLGHVAVKIGKAFGLKVTVISSSSNKED-EAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS 256 (360)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcchhh-hHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC
Confidence 577899976 599999999988888999988876543322 2211122111 110011111112236899999886
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.046 Score=54.62 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceE--EEecccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFE--LIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~--~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.+.+|+|+|+ |-+|...++.|.+.|.+|++++|+.... +.+...... .+. +...+...+.+.+.|+||++++.
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~-~~l~~~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRL-RQLDAEFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHH-HHHHHhcCc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 5567999985 9999999999999999999999864321 111111111 111 11112233456689999998754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.26 Score=50.63 Aligned_cols=71 Identities=23% Similarity=0.335 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEe
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHL 186 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~ 186 (447)
...++|+|.|+ |.+|+.+++.|.+.|++|+++++++... +.+... ...+.++.+|.++.. +.++|.||-+
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~-~~~~~~--~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERA-EELAEE--LPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH-HHHHHH--CCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 45688999996 9999999999999999999998764321 122111 124667888886653 3468888854
Q ss_pred c
Q 013226 187 A 187 (447)
Q Consensus 187 A 187 (447)
.
T Consensus 305 ~ 305 (453)
T PRK09496 305 T 305 (453)
T ss_pred C
Confidence 4
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.6 Score=42.31 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=31.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNY 148 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~ 148 (447)
.++.++|+|.| .|++|..++..|++.|. +++++|.+
T Consensus 18 ~L~~~~V~IvG-~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICG-LGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45678899999 58899999999999998 79999876
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.038 Score=48.37 Aligned_cols=65 Identities=20% Similarity=0.163 Sum_probs=43.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
+++|.+.| .|-+|+.++++|++.|++|++.+|+..... .+... . ....|...+...++|+||-+-
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~-~~~~~----g--~~~~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKAE-ALAEA----G--AEVADSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHH-HHHHT----T--EEEESSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhhh-hhHHh----h--hhhhhhhhhHhhcccceEeec
Confidence 46899999 799999999999999999999998532221 11111 1 344455555666789999775
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis [] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.16 Score=49.94 Aligned_cols=101 Identities=13% Similarity=0.010 Sum_probs=63.6
Q ss_pred cccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 176 ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 176 ~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
.+.++..+|.+-|........ .......+...-+..|+++.. +.+. ++|.++|.+. .
T Consensus 200 ~l~~i~t~is~LGsts~~a~~-s~~~~~~IDy~Lnl~laq~f~~~~~~~~~K~~vIvTSfn~-----------------~ 261 (410)
T PF08732_consen 200 SLDDIKTMISTLGSTSAQAKS-SKAARHKIDYQLNLDLAQTFANDIKNTGNKKLVIVTSFNN-----------------N 261 (410)
T ss_pred chhhhhhheecCCCChhhccc-cccchhhccccccHHHHHHhhhhhccCCCceEEEEEecCc-----------------c
Confidence 344688899988865432211 111111233333445555554 4444 8999999652 2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMC 294 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~ 294 (447)
......+|..+|...|.-+.......=-.++|+|||.+.|....
T Consensus 262 ~~s~~f~Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~ 305 (410)
T PF08732_consen 262 AISSMFPYFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS 305 (410)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence 33445789999999999887764321236899999999998765
|
It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.6 Score=35.80 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=47.4
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCC
Q 013226 116 LRILVTGGA---GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASP 192 (447)
Q Consensus 116 ~~ilVtGas---G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~ 192 (447)
|+|.|.|+| +-.|..+.+.|.+.|++|+.+.-. ..++. .. -.-.++.+ .-..+|.++-+..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~----~~~i~------G~-~~y~sl~e-~p~~iDlavv~~~---- 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPK----GGEIL------GI-KCYPSLAE-IPEPIDLAVVCVP---- 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTT----CSEET------TE-E-BSSGGG-CSST-SEEEE-S-----
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCC----ceEEC------cE-EeeccccC-CCCCCCEEEEEcC----
Confidence 579999988 678999999999999999998532 12111 11 12223333 2346888886642
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
-.-+..+++.|.+.|+ .+++.++
T Consensus 65 --------------~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 65 --------------PDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp --------------HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred --------------HHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2233467777877888 5665555
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.088 Score=52.69 Aligned_cols=73 Identities=19% Similarity=0.346 Sum_probs=55.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
++++++++|.| +|=+|.-++++|.++|. +|+++.|... +...+...+ ...++..|-....+..+|+||-+.+.
T Consensus 175 ~L~~~~vlvIG-AGem~~lva~~L~~~g~~~i~IaNRT~e-rA~~La~~~---~~~~~~l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 175 SLKDKKVLVIG-AGEMGELVAKHLAEKGVKKITIANRTLE-RAEELAKKL---GAEAVALEELLEALAEADVVISSTSA 248 (414)
T ss_pred ccccCeEEEEc-ccHHHHHHHHHHHhCCCCEEEEEcCCHH-HHHHHHHHh---CCeeecHHHHHHhhhhCCEEEEecCC
Confidence 36889999999 89999999999999995 6777777533 333333333 36777778888888899999988764
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.54 Score=44.69 Aligned_cols=100 Identities=21% Similarity=0.226 Sum_probs=59.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc------------------cccccccCCCceEEEeccc-
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK------------------DNLIHHFGNPRFELIRHDV- 172 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~------------------~~~~~~~~~~~v~~~~~D~- 172 (447)
+++.-|+|+| .|++|++++..|++.|. ++.++|-+.-... ..+++++. .-.-+.+.|.
T Consensus 72 l~~syVVVVG-~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~s-kiaPw~eIdar 149 (430)
T KOG2018|consen 72 LTNSYVVVVG-AGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFS-KIAPWCEIDAR 149 (430)
T ss_pred hcCcEEEEEe-cCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHH-hhCccceecHH
Confidence 4555577777 89999999999999998 5666654321110 11111110 0011222222
Q ss_pred --------ccc-cccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 173 --------VEP-ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 173 --------~~~-~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
.+. .+.++|.|+.|. -|+..-..|+++|..+|.++| ||+++.
T Consensus 150 ~~l~~~~s~edll~gnPdFvvDci-----------------DNidtKVdLL~y~~~~~l~Vi--ss~Gaa 200 (430)
T KOG2018|consen 150 NMLWTSSSEEDLLSGNPDFVVDCI-----------------DNIDTKVDLLEYCYNHGLKVI--SSTGAA 200 (430)
T ss_pred HhhcCCCchhhhhcCCCCeEeEhh-----------------hhhhhhhHHHHHHHHcCCceE--eccCcc
Confidence 222 234588898886 567777789999999987665 555543
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.21 Score=48.62 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=49.8
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.+++|.|.| .|-||+.+++.|..-|.+|++.++..... +.. ..+...+..++.+.++|+|+.+..
T Consensus 132 ~~l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~-~~~--------~~~~~~~~l~e~l~~aDvvv~~lP 199 (312)
T PRK15469 132 YHREDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSW-PGV--------QSFAGREELSAFLSQTRVLINLLP 199 (312)
T ss_pred CCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCC-CCc--------eeecccccHHHHHhcCCEEEECCC
Confidence 356889999999 99999999999999999999998743221 100 112233455667788999998764
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.12 Score=52.32 Aligned_cols=68 Identities=21% Similarity=0.156 Sum_probs=48.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.+.|++|+|+| .|.||+.++..|...|.+|+++++++....+... ..++... .++.+.++|+||.+.|
T Consensus 209 ~l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----~G~~v~~---l~eal~~aDVVI~aTG 276 (425)
T PRK05476 209 LIAGKVVVVAG-YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----DGFRVMT---MEEAAELGDIFVTATG 276 (425)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----cCCEecC---HHHHHhCCCEEEECCC
Confidence 35889999999 6999999999999999999999886433221111 1223222 2345668999998765
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.41 Score=48.57 Aligned_cols=34 Identities=38% Similarity=0.480 Sum_probs=30.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
|+|.|.| .|++|..++..|++.|++|++.+++..
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 4688897 899999999999999999999998644
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.37 Score=47.78 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=52.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCe---EEEEecCCCCCccccccccCCCceEEEecccc-cccccCCCEEEEeccCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR-GDS---VIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV-EPILLEVDQIYHLACPA 190 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~-G~~---V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~~~~d~Vih~Ag~~ 190 (447)
++|.|.||||++|+.+++.|+++ ... ++.+...... .... .+....... .+.. ...+.++|+||.+++.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg--~~~~-~f~g~~~~v--~~~~~~~~~~~~Divf~a~~~- 75 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAG--GAAP-SFGGKEGTL--QDAFDIDALKKLDIIITCQGG- 75 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhC--Cccc-ccCCCcceE--EecCChhHhcCCCEEEECCCH-
Confidence 67999999999999999855554 444 5555442111 1111 112212222 2222 2345689999988751
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCe--EEEEeCcc
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR--FLLTSTSE 231 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r--~v~~SS~~ 231 (447)
.-+..+...+.++|.+ +|=.||..
T Consensus 76 -----------------~~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 76 -----------------DYTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred -----------------HHHHHHHHHHHhCCCCeEEEECChHH
Confidence 1223455566667854 55566554
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=1 Score=42.80 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=52.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 194 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~ 194 (447)
++|.|.|. |.||+.+++.|.+. +.++..+..... ..+........ .+. +..|+.+ ...++|+||-|++..
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~-~~~~~~~~~~~-~~~-~~~d~~~-l~~~~DvVve~t~~~---- 72 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEH-SIDAVRRALGE-AVR-VVSSVDA-LPQRPDLVVECAGHA---- 72 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCC-CHHHHhhhhcc-CCe-eeCCHHH-hccCCCEEEECCCHH----
Confidence 68999997 99999999999886 456666553211 11111111111 111 1122222 235689999998621
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCc
Q 013226 195 YKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230 (447)
Q Consensus 195 ~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~ 230 (447)
....+...+.++|++++..|..
T Consensus 73 --------------~~~e~~~~aL~aGk~Vvi~s~~ 94 (265)
T PRK13303 73 --------------ALKEHVVPILKAGIDCAVISVG 94 (265)
T ss_pred --------------HHHHHHHHHHHcCCCEEEeChH
Confidence 1124555666677777755543
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.69 Score=43.24 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=54.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-CeEEE-EecCCCCCc-cccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRG-DSVIV-VDNYFTGKK-DNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~-l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
+++|.|.|++|-+|+.+++.+.+.. .++.. ++|...... ...-+..........-.|........+|++|.+..+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P-- 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTP-- 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCc--
Confidence 5789999999999999999999876 45443 455322111 111111111122222222233345568999987532
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 227 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~ 227 (447)
.++...++.|.++++++|.=
T Consensus 80 ----------------~~~~~~l~~~~~~~~~lVIG 99 (266)
T COG0289 80 ----------------EATLENLEFALEHGKPLVIG 99 (266)
T ss_pred ----------------hhhHHHHHHHHHcCCCeEEE
Confidence 24456778888888755543
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.45 Score=49.01 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=57.5
Q ss_pred CCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEe
Q 013226 107 VPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 107 ~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
.|....+++++|+|+| .|-++..=++.|++.|.+|+++... -.+++.......++.+...+.....+.+.+.||-+
T Consensus 4 ~P~~~~l~~~~vlvvG-gG~vA~rk~~~ll~~ga~v~visp~---~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~a 79 (457)
T PRK10637 4 LPIFCQLRDRDCLLVG-GGDVAERKARLLLDAGARLTVNALA---FIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAA 79 (457)
T ss_pred eceEEEcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCC---CCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEEC
Confidence 4666778999999999 6888888889999999999998642 22333333344578888888877778888877744
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.19 Score=48.93 Aligned_cols=53 Identities=25% Similarity=0.235 Sum_probs=41.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
.+|+|.|.| +|-+|..++..|.+.|++|++.+|+.. +-.+..+.+.|+||-+.
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~advvi~~v 55 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLADADVIVSAV 55 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhcCCEEEEEC
Confidence 457899997 899999999999999999999988532 11123345689888775
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.24 Score=47.61 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=30.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
++|.|.| +|.+|..++..|++.|++|++.+++..
T Consensus 4 ~kIaViG-aG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAG-AGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799998 699999999999999999999998643
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.17 Score=48.20 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=44.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.++.|++++|.|.++.+|+.++..|.++|.+|+++.... . | ....+...|+||-.+|
T Consensus 154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t----~----------------~-l~~~~~~ADIVV~avG 210 (285)
T PRK14189 154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT----R----------------D-LAAHTRQADIVVAAVG 210 (285)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC----C----------------C-HHHHhhhCCEEEEcCC
Confidence 357999999999999999999999999999999865421 1 1 1234556899998887
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.29 Score=50.84 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
.+++|+|.| .|-.|...++.|.++|++|++.|+.... .+. +....+.++..+.....+.++|.||...|+.
T Consensus 11 ~~~~v~V~G-~G~sG~aa~~~L~~~G~~v~~~D~~~~~-~~~----l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~ 81 (488)
T PRK03369 11 PGAPVLVAG-AGVTGRAVLAALTRFGARPTVCDDDPDA-LRP----HAERGVATVSTSDAVQQIADYALVVTSPGFR 81 (488)
T ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEcCCHHH-HHH----HHhCCCEEEcCcchHhHhhcCCEEEECCCCC
Confidence 578899999 8889999999999999999998864221 111 1112445554433333456789999998864
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.19 Score=47.92 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=45.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.++.|++++|+|.+..+|+.++..|.++|++|++...... | ......+.|+||..+|.
T Consensus 160 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~--------------------~-l~~~~~~ADIvv~AvG~ 217 (287)
T PRK14176 160 VDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD--------------------D-LKKYTLDADILVVATGV 217 (287)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC--------------------C-HHHHHhhCCEEEEccCC
Confidence 3578999999999999999999999999999998864211 1 12234568999988874
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.15 Score=49.14 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=47.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCC--CCccccccccCC---CceEEEeccc---ccccccCCCE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFT--GKKDNLIHHFGN---PRFELIRHDV---VEPILLEVDQ 182 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~--~~~~~~~~~~~~---~~v~~~~~D~---~~~~~~~~d~ 182 (447)
..++++++|.| +|+.+++++..|...|. +|++++|+.. .+.+.+...+.. ..+.+...+. ....+.+.|+
T Consensus 121 ~~~~k~vlvlG-aGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 121 DIKGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 199 (288)
T ss_pred CcCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCE
Confidence 35778999999 57779999999999996 8999999643 122333222211 1123332221 1224457899
Q ss_pred EEEecc
Q 013226 183 IYHLAC 188 (447)
Q Consensus 183 Vih~Ag 188 (447)
|||+..
T Consensus 200 vINaTp 205 (288)
T PRK12749 200 LTNGTK 205 (288)
T ss_pred EEECCC
Confidence 999764
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.24 Score=49.61 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=43.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEecccccccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.+.+|+|.|+ |.+|..+++.+...|.+|+++++..+.+.+.. ..++... ++..+.+.......++|+||.+.|
T Consensus 178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a-~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G 251 (375)
T PLN02178 178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREAI-DRLGADSFLVTTDSQKMKEAVGTMDFIIDTVS 251 (375)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHHH-HhCCCcEEEcCcCHHHHHHhhCCCcEEEECCC
Confidence 5778999885 99999999988889999998877543222211 1122111 111010111112236899999886
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.29 Score=47.05 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=31.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG 151 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~ 151 (447)
++|.|.| +|.+|..++..|+..|++|++.+++++.
T Consensus 6 ~~V~ViG-aG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVG-AGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEc-ccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 4799998 5999999999999999999999987553
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.27 Score=47.91 Aligned_cols=36 Identities=28% Similarity=0.134 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+.+++|.|++|.+|..+++.+.+.|.+|+++++..
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~ 174 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSD 174 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcH
Confidence 577899999999999999998888999999988753
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.27 Score=37.15 Aligned_cols=34 Identities=29% Similarity=0.573 Sum_probs=29.6
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG 151 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~ 151 (447)
+|+|.| +|++|-.++..|.+.|.+|+++.+.+..
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 467777 8999999999999999999999986543
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.079 Score=52.49 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
.|.+|+|+|++|.+|..+++.+...|.+|++++++
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~ 192 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS 192 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC
Confidence 57899999999999999998888889999888764
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.1 Score=50.91 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.|.+|+|+|++|.+|..+++.+...|.+|++++++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999999999999988888899999888753
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.22 Score=49.33 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=50.7
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc--cccCCCc-e-EEEecccccccccCCCEEEE
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI--HHFGNPR-F-ELIRHDVVEPILLEVDQIYH 185 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~--~~~~~~~-v-~~~~~D~~~~~~~~~d~Vih 185 (447)
...+.||++.|.| .|-||+.+++.|..-|.+|++.+|.......... ....... + .....+-.++.+..+|+|+.
T Consensus 154 ~~~l~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 154 GDTLFGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVL 232 (347)
T ss_pred ccCCCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEE
Confidence 3468899999999 7999999999999999999999885321111000 0000000 0 01133445667788999998
Q ss_pred ecc
Q 013226 186 LAC 188 (447)
Q Consensus 186 ~Ag 188 (447)
+..
T Consensus 233 ~lP 235 (347)
T PLN02928 233 CCT 235 (347)
T ss_pred CCC
Confidence 764
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.11 Score=50.75 Aligned_cols=71 Identities=20% Similarity=0.371 Sum_probs=48.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+++|+|.|+ |-+|..+++.|...| .+|++++|+.... ..+...++. ..+..+.....+.++|+||.+.+
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra-~~la~~~g~---~~~~~~~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERA-EELAKELGG---NAVPLDELLELLNEADVVISATG 247 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHcCC---eEEeHHHHHHHHhcCCEEEECCC
Confidence 47889999995 999999999999876 5788888854322 222222222 33333334445667999999876
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.53 Score=50.69 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=62.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccc-------ccc----------------CCCceE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLI-------HHF----------------GNPRFE 166 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~-------~~~----------------~~~~v~ 166 (447)
..++..+|+|.| .|++|.+++..|++.|. +++++|.+.-.. .++. ..+ ...+++
T Consensus 39 ~kL~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~-sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~ 116 (679)
T PRK14851 39 ERLAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEP-VNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEIT 116 (679)
T ss_pred HHHhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecc-cccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEE
Confidence 356778999999 89999999999999997 677776532110 0000 000 112344
Q ss_pred EEeccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Q 013226 167 LIRHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229 (447)
Q Consensus 167 ~~~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS 229 (447)
.+...+.+ ..+.++|+||.+.- + ..+..-..+.+.|.+.++.+|+.+.
T Consensus 117 ~~~~~i~~~n~~~~l~~~DvVid~~D---------~------~~~~~r~~l~~~c~~~~iP~i~~g~ 168 (679)
T PRK14851 117 PFPAGINADNMDAFLDGVDVVLDGLD---------F------FQFEIRRTLFNMAREKGIPVITAGP 168 (679)
T ss_pred EEecCCChHHHHHHHhCCCEEEECCC---------C------CcHHHHHHHHHHHHHCCCCEEEeec
Confidence 55444433 23567999997652 0 0111223466788888888887654
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.22 Score=47.42 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=34.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEec
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDN 147 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r 147 (447)
.++.||+|+|.|.|..+|+.++..|.++|++|+++..
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs 190 (282)
T PRK14180 154 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHR 190 (282)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcC
Confidence 4578999999999999999999999999999998865
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.41 Score=45.62 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=42.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
++.++|.|.| .|.||+.+++.|.+. +++|..+..+.+.+.+......+. .. ..+-.++.+.++|+||-++.
T Consensus 4 m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~--~~--~~~~~eell~~~D~Vvi~tp 76 (271)
T PRK13302 4 RPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR--PP--PVVPLDQLATHADIVVEAAP 76 (271)
T ss_pred CCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC--Cc--ccCCHHHHhcCCCEEEECCC
Confidence 3557899999 799999999999874 678876544322222222111110 01 11223334557899998875
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.53 Score=43.33 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=30.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNY 148 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~ 148 (447)
.++..+|+|.| -|++|++.++.|++.|. +++++|-+
T Consensus 27 kl~~~~V~VvG-iGGVGSw~veALaRsGig~itlID~D 63 (263)
T COG1179 27 KLKQAHVCVVG-IGGVGSWAVEALARSGIGRITLIDMD 63 (263)
T ss_pred HHhhCcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecc
Confidence 35667899999 89999999999999997 77777643
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.16 Score=50.25 Aligned_cols=74 Identities=24% Similarity=0.263 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC-CCCccccccccCCCceEEEeccccc-ccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF-TGKKDNLIHHFGNPRFELIRHDVVE-PILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~-~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~d~Vih~Ag 188 (447)
.+.+|+|+|+ |.+|...++.+...|.+|++++|+. .+.+.++.+.++...++..+.|..+ ....++|+||.+.|
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcC
Confidence 5778999985 9999999988888899999998742 1112122222222112111111111 11246899999987
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 447 | ||||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 1e-116 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 1e-112 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 3e-33 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 5e-29 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 4e-27 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 5e-27 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 5e-27 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-26 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-26 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 4e-24 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 7e-24 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 9e-23 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 2e-21 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 5e-21 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 7e-21 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 2e-20 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 2e-20 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 3e-20 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 3e-20 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 5e-20 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 5e-20 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 5e-20 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 5e-20 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 5e-20 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 5e-20 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 6e-20 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 7e-20 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 8e-20 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 8e-20 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 9e-20 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 1e-19 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 2e-19 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 8e-19 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-18 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 2e-18 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 2e-18 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-18 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-18 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 3e-18 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 5e-18 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 7e-18 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 7e-18 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 8e-18 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 2e-16 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 3e-16 | ||
| 1db3_A | 372 | E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | 1e-14 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 6e-14 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 1e-13 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 1e-12 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 1e-12 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 3e-12 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 3e-12 | ||
| 4b8w_A | 319 | Crystal Structure Of Human Gdp-L-Fucose Synthase Wi | 5e-12 | ||
| 4b8z_A | 320 | Crystal Structure Of Human Gdp-l-fucose Synthase Wi | 5e-12 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 1e-11 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 3e-11 | ||
| 3m2p_A | 311 | The Crystal Structure Of Udp-N-Acetylglucosamine 4- | 6e-11 | ||
| 1t2a_A | 375 | Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydr | 2e-10 | ||
| 1e6u_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Le | 2e-10 | ||
| 1bsv_A | 321 | Gdp-Fucose Synthetase From Escherichia Coli Complex | 4e-10 | ||
| 1e7q_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S1 | 7e-10 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 7e-10 | ||
| 1e7s_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K1 | 1e-09 | ||
| 1bws_A | 321 | Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose E | 1e-09 | ||
| 1n7g_A | 381 | Crystal Structure Of The Gdp-mannose 4,6-dehydratas | 2e-09 | ||
| 1e7r_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y1 | 2e-09 | ||
| 1rpn_A | 335 | Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase | 6e-09 | ||
| 1wvg_A | 359 | Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal | 7e-09 | ||
| 2z1m_A | 345 | Crystal Structure Of Gdp-D-Mannose Dehydratase From | 1e-07 | ||
| 1rkx_A | 357 | Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose | 8e-07 | ||
| 2x6t_A | 357 | Agme Bound To Adp-B-Mannose Length = 357 | 1e-05 | ||
| 1eq2_A | 310 | The Crystal Structure Of Adp-L-Glycero-D-Mannohepto | 1e-05 | ||
| 1i2b_A | 404 | Crystal Structure Of Mutant T145a Sqd1 Protein Comp | 2e-04 | ||
| 1qrr_A | 394 | Crystal Structure Of Sqd1 Protein Complex With Nad | 2e-04 | ||
| 1i24_A | 404 | High Resolution Crystal Structure Of The Wild-Type | 2e-04 | ||
| 2gn4_A | 344 | Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehyd | 3e-04 | ||
| 3a1n_A | 317 | Crystal Structure Of L-Threonine Dehydrogenase From | 7e-04 |
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With Bound Nadp And Gdp, Tetragonal Crystal Form Length = 319 | Back alignment and structure |
|
| >pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With Bound Nadp And Gdp, Rhombohedral Crystal Form Length = 320 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311 | Back alignment and structure |
|
| >pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase Length = 375 | Back alignment and structure |
|
| >pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Length = 321 | Back alignment and structure |
|
| >pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With Nadph Length = 321 | Back alignment and structure |
|
| >pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a Length = 321 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r Length = 321 | Back alignment and structure |
|
| >pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In The Biosynthesis Of Gdp-L- Fucose Length = 321 | Back alignment and structure |
|
| >pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase Ternary Complex With Nadph And Gdp-rhamnose. Length = 381 | Back alignment and structure |
|
| >pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e Length = 321 | Back alignment and structure |
|
| >pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In Complexes With Gdp And Nadph Length = 335 | Back alignment and structure |
|
| >pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359 | Back alignment and structure |
|
| >pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From Aquifex Aeolicus Vf5 Length = 345 | Back alignment and structure |
|
| >pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6- Dehydratase From Yersinia Pseudotuberculosis Length = 357 | Back alignment and structure |
|
| >pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose Length = 357 | Back alignment and structure |
|
| >pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6- Epimerase Length = 310 | Back alignment and structure |
|
| >pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex With Nad And Udp-SulfoquinovoseUDP-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And Udp- Glucose Length = 394 | Back alignment and structure |
|
| >pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein Sqd1, With Nad And Udp-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase In Complex With Nadph And Udp-Glcnac Length = 344 | Back alignment and structure |
|
| >pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 447 | |||
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 0.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 1e-180 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 1e-175 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 1e-173 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-156 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 1e-140 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 1e-123 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 7e-95 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 3e-84 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 1e-83 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 4e-78 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 2e-77 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 3e-77 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 8e-72 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 3e-69 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 4e-69 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 3e-68 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 3e-65 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 6e-65 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 1e-63 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 2e-58 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 2e-54 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 3e-53 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 1e-50 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 1e-46 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 3e-39 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 4e-38 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 5e-37 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 6e-37 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 4e-35 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 1e-34 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 6e-33 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 9e-31 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 2e-30 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 8e-27 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 1e-21 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 3e-20 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 8e-20 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 5e-19 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 6e-19 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 4e-17 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 5e-16 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 1e-15 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 3e-15 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 8e-15 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 1e-14 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 1e-13 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 1e-10 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 2e-10 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 1e-09 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 2e-09 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 3e-09 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 3e-09 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 4e-09 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 2e-08 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 6e-08 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 7e-08 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 1e-07 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 3e-07 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 8e-07 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 1e-06 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 2e-06 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 2e-06 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 3e-06 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 4e-06 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 6e-06 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 1e-05 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 2e-04 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 8e-04 |
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 588 bits (1517), Expect = 0.0
Identities = 197/340 (57%), Positives = 248/340 (72%), Gaps = 4/340 (1%)
Query: 95 AAEVQHVNAGGKVPL----GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150
++ H ++ G+ L +++ RIL+TGGAGFVGSHL D+LM G V VVDN+FT
Sbjct: 3 SSHHHHHHSSGRENLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT 62
Query: 151 GKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGT 210
G+K N+ H G+ FELI HDVVEP+ +EVDQIYHLA PASP +Y +NP+KT+KTN +GT
Sbjct: 63 GRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGT 122
Query: 211 LNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTM 270
LNMLGLAKRVGAR LL STSEVYGDP HPQ+E YWG+VNPIG R+CYDEGKR AET+
Sbjct: 123 LNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCY 182
Query: 271 DYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330
Y + G+E R+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VS
Sbjct: 183 AYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVS 242
Query: 331 DLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKP 390
DLV GL+ LM + P NLGNP E T+LE A++++ ++ + I+F +DDP KRKP
Sbjct: 243 DLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKP 302
Query: 391 DITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFGDQKEAG 430
DI KAK +LGWEP V L +GL + FR + G
Sbjct: 303 DIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQG 342
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 505 bits (1302), Expect = e-180
Identities = 80/349 (22%), Positives = 144/349 (41%), Gaps = 39/349 (11%)
Query: 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV-- 172
+R+L+ G GF+G+HL +RL+ V +D D + +P F + D+
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56
Query: 173 ----VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228
+E + + D + L A+P+ Y NP++ + + L ++ + R + S
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 229 TSEVYGDPLQHPQAETYWG-NVNPIGV-RSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
TSEVYG E + V P+ R Y K+ + + Y G++ + R F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176
Query: 287 NTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLM 340
N GPR+ I R ++ + + P+ + GKQ R F + D +E L R++
Sbjct: 177 NWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236
Query: 341 EGDHV----GPFNLGNP-GEFTMLELAEVVQEIIDRNARI---------------EFRPN 380
E N+GNP E ++ EL E++ +++ +
Sbjct: 237 ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGK 296
Query: 381 TEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFGDQKEA 429
D RKP I A + L WEP++ +++ + + F + K +
Sbjct: 297 GYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDKPS 345
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 493 bits (1270), Expect = e-175
Identities = 88/367 (23%), Positives = 152/367 (41%), Gaps = 44/367 (11%)
Query: 92 LYEAAEVQHVNAGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG 151
+ + + A + P ++ K ++L+ G GF+G HL R+++ D + + T
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMKAK--KVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTD 60
Query: 152 KKDNLIHHFGNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKT 205
+ +L+ H R D+ VE + + D I L A+P Y P++ +
Sbjct: 61 RLGDLVKH---ERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFEL 117
Query: 206 NVVGTLNMLGLAKRVGARFLLTSTSEVYG---DPLQHPQAETY-WGNVNPIGVRSCYDEG 261
+ L ++ A + G + STSEVYG D P A +G +N R Y
Sbjct: 118 DFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKP--RWIYACS 175
Query: 262 KRTAETLTMDYHRGLGIEARIARIFNTYGPRMC------IDDGRVVSNFVAQALRKEPLT 315
K+ + + Y G+ + R FN GP + RVV+ F+ +R E ++
Sbjct: 176 KQLMDRVIWGYGM-EGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENIS 234
Query: 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VGP-FNLGNP-GEFTMLELAEVVQEI-- 368
+ G Q R+F +V D + L++++E + G +N+GNP F++ ELA + E+
Sbjct: 235 LVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAA 294
Query: 369 -------------IDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415
+ + N D R P I Q LGW P+ T L +
Sbjct: 295 EFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIF 354
Query: 416 ADFRHRI 422
+R +
Sbjct: 355 EAYRGHV 361
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 488 bits (1259), Expect = e-173
Identities = 89/327 (27%), Positives = 148/327 (45%), Gaps = 14/327 (4%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV 172
++L+I +TG GF+ SH+ RL G VI D K +++ F L+ V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRV 83
Query: 173 VE---PILLEVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 227
+E + VD +++LA + + N + N + + NM+ A+ G RF
Sbjct: 84 MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYA 143
Query: 228 STSEVYGDPLQHPQAETY--WGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARI 285
S++ +Y + Q + P + + K E L Y++ GIE RI R
Sbjct: 144 SSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRF 203
Query: 286 FNTYGPRMCIDDGR--VVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342
N YGP GR + F +A + ++GDG QTRSF F+ + VEG++RL +
Sbjct: 204 HNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKS 263
Query: 343 DHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWE 402
D P N+G+ +M E+AE+V ++ I P + R D K+ LGW
Sbjct: 264 DFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP-EGVRGRNSDNNLIKEKLGWA 322
Query: 403 PRVTLRKGLPLMVADFRHRIFGDQKEA 429
P + L++GL + + +I ++ +
Sbjct: 323 PNMRLKEGLRITYFWIKEQIEKEKAKG 349
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 445 bits (1146), Expect = e-156
Identities = 90/349 (25%), Positives = 146/349 (41%), Gaps = 28/349 (8%)
Query: 99 QHVNAGGKVPLGLQRKSL---RILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKD 154
V G +P+ + L ++V GGAGFVGS+LV RL++ G + V VVDN + +K
Sbjct: 13 GLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI 72
Query: 155 NLIHHFGNPRFELIRHDVVEPILL-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVG 209
N+ H P + + LL E D ++HLA +P+ + N +
Sbjct: 73 NVPDH---PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLT 129
Query: 210 TLNMLGLAKRVGA--RFLLTSTSEVYGD-PLQHPQAETYWGNVNPIGVRSCYDEGKRTAE 266
TL + K + + ++ + +A V+ S Y K E
Sbjct: 130 TLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGE 189
Query: 267 TLTMDYHRGLGIEARIARIFNTYGPRMCIDDGR-----------VVSNFVAQALRKEPLT 315
++ YH+ + AR N YGP + GR V F+ +AL+ PL
Sbjct: 190 FYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLP 249
Query: 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNAR 374
+ G TR F FV D+ GLI G +N+ + E ++ +LA + EI N
Sbjct: 250 LENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTE 309
Query: 375 IEFRPN-TEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRI 422
++ P D+ KR KA++ LG+ V++ GL + + +
Sbjct: 310 LDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANL 358
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 402 bits (1035), Expect = e-140
Identities = 80/318 (25%), Positives = 135/318 (42%), Gaps = 20/318 (6%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG---KKDNLIHHFGNPRFELIRHDVV 173
RIL+TGGAGF+G HL L+ G+ V V+D+ + P EL D+
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS 68
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 232
+ V +YHLA S P+ + NV ++L L VG + ++ ST EV
Sbjct: 69 D-----VRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGSTCEV 122
Query: 233 YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEA-RIARIFNTYGP 291
YG P E +P+ RS Y K E + + R I R FN YGP
Sbjct: 123 YGQADTLPTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGP 177
Query: 292 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLG 351
+V A L + L V GDG+Q R F +++D+V+ L+ L N G
Sbjct: 178 GE--RPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSVVNFG 235
Query: 352 NPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP-RVTLRKG 410
+ ++ ++ ++ + A + + ++ + + D + +G + + +G
Sbjct: 236 SGQSLSVNDVIRIL-QATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEG 294
Query: 411 LPLMVADFRHRIFGDQKE 428
+ L + ++ R D ++
Sbjct: 295 IRLTLEWWQSRDLDDIRQ 312
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 360 bits (927), Expect = e-123
Identities = 96/324 (29%), Positives = 145/324 (44%), Gaps = 29/324 (8%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RI+VTGGAGF+GSHLVD+L++ G V+VVDN +G+++ + NP EL D+ +
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYS 56
Query: 177 LLE---VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 232
D ++H A P+ NVV T N+L A++ G + S+S V
Sbjct: 57 WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTV 116
Query: 233 YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292
YGD P E P S Y K E + Y R G+ R N GPR
Sbjct: 117 YGDADVIPTPEEE-----PYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPR 171
Query: 293 MCIDDGRVVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEGLIRLME-----GDHVG 346
+ V+ +F+ + R L V GDG Q +S+ +V D VE + +
Sbjct: 172 L---RHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFL 228
Query: 347 PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED------DPHKRKPDITKAKQLLG 400
N+GN +L++A++V E++ I P+T D D +TK +L G
Sbjct: 229 ALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTG 288
Query: 401 WEPRVTLRKGLPLMVADFRHRIFG 424
W P +T + + D ++G
Sbjct: 289 WRPTMTSAEAVKKTAEDLAKELWG 312
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 287 bits (737), Expect = 7e-95
Identities = 69/312 (22%), Positives = 117/312 (37%), Gaps = 26/312 (8%)
Query: 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE 174
SL+I VTGG GF+G ++V+ + + G++ I++ K N +E D
Sbjct: 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAIND--------YEYRVSDYTL 53
Query: 175 PILLE----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTST 229
L+ VD + HLA + N + T N+ + + ST
Sbjct: 54 EDLINQLNDVDAVVHLAATRG-SQG---KISEFHDNEILTQNLYDACYENNISNIVYAST 109
Query: 230 SEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
Y D P E P Y K E + Y R G+ + R + Y
Sbjct: 110 ISAYSDETSLPWNEKEL--PLPD---LMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLY 164
Query: 290 GPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG-PF 348
G + +++ F QA E LT++ + R F + D + +I ++ + V F
Sbjct: 165 GFNE--KNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGTF 222
Query: 349 NLGNPGEFTMLELAEVVQEIIDRNARIEFR-PNTEDDPHKRKPDITKAKQLLGWEPRVTL 407
N+G+ T E+A + + + PN + H D +KAK+LL +
Sbjct: 223 NIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNF 282
Query: 408 RKGLPLMVADFR 419
+ + R
Sbjct: 283 ATAVEEIHLLMR 294
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 3e-84
Identities = 87/319 (27%), Positives = 148/319 (46%), Gaps = 31/319 (9%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
I+VTGGAGF+GSH+VD+L + + ++V+DN +G ++ + N L++ D+
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSESNE-IVVIDNLSSGNEEFV-----NEAARLVKADLAADD 56
Query: 177 LLE----VDQIYHLAC----PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLT 227
+ + ++++H+A NP + + NV+ T +L ++ G R + T
Sbjct: 57 IKDYLKGAEEVWHIAANPDVRIGAE----NPDEIYRNNVLATYRLLEAMRKAGVSRIVFT 112
Query: 228 STSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
STS VYG+ P E Y +PI S Y K E L Y ++A I R N
Sbjct: 113 STSTVYGEAKVIPTPEDY--PTHPI---SLYGASKLACEALIESYCHTFDMQAWIYRFAN 167
Query: 288 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG- 346
G R G + + E L + G+G+Q +S+ ++SD V+ ++ + GD
Sbjct: 168 VIGRRS--THGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVN 225
Query: 347 PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED---DPHKRKPDITKAKQLLGWEP 403
FN+G+ + + +AE+V E + + R F D I K K+ LGW+P
Sbjct: 226 IFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKR-LGWKP 284
Query: 404 RVTLRKGLPLMVADFRHRI 422
R + + + V D +
Sbjct: 285 RYNSEEAVRMAVRDLVEDL 303
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 1e-83
Identities = 79/331 (23%), Positives = 140/331 (42%), Gaps = 27/331 (8%)
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL------IHHFGNPR 164
L + L+TG AGF+GS+L++ L+ V+ +DN+ TG + NL +
Sbjct: 23 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSN 82
Query: 165 FELIRHDV-----VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR 219
F+ I+ D+ VD + H A S +P+ + TN+ G LNML A+
Sbjct: 83 FKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARD 142
Query: 220 VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGI 278
F ++S YGD P+ E G P+ S Y K E + R G
Sbjct: 143 AKVQSFTYAASSSTYGDHPGLPKVEDTIG--KPL---SPYAVTKYVNELYADVFSRCYGF 197
Query: 279 EARIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336
R FN +G R + V+ + + ++ + + + GDG+ +R F ++ + V+
Sbjct: 198 STIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQAN 257
Query: 337 IRLMEGDHVGP---FNLGNPGEFTMLELAEVVQEIIDRNA-----RIEFRPNTEDDPHKR 388
+ +N+ G ++ +L +++ + N +R E D
Sbjct: 258 LLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHS 317
Query: 389 KPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419
DI+KA +LLG+ P+ + G+ L + +
Sbjct: 318 LADISKAAKLLGYAPKYDVSAGVALAMPWYI 348
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 4e-78
Identities = 84/333 (25%), Positives = 135/333 (40%), Gaps = 33/333 (9%)
Query: 99 QHVNAGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH 158
H ++ G VP G K ++ +TG G +GSH+ + L++RGD V+ +DN+ TG++++L
Sbjct: 7 HHHHSSGLVPRGSHMK--KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKD 64
Query: 159 HFGNPRFELIRHDVVEPILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTL 211
H P + + + L+ D + H A + TN VG
Sbjct: 65 H---PNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPD---DWYNDTLTNCVGGS 118
Query: 212 NMLGLAKRVGA-RFLLTSTSEVYGD-PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLT 269
N++ AK+ RF+ T+ YG P+Q P + NP S Y K E
Sbjct: 119 NVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRLDH--PRNPA--NSSYAISKSANED-- 172
Query: 270 MDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329
Y G++ R+ N GPR + F + + V K R F FV
Sbjct: 173 --YLEYSGLDFVTFRLANVVGPRNVSG---PLPIFFQRLSEGKKCFV---TKARRDFVFV 224
Query: 330 SDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEI--IDRNARIEFRPNTEDDPHK 387
DL +R ++G G ++ + + + EL + V E + E R DD
Sbjct: 225 KDLARATVRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPS 284
Query: 388 RKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420
D ++ Q G L++ + VA FR
Sbjct: 285 ILLDPSRTIQDFGKIEFTPLKETVAAAVAYFRE 317
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 252 bits (646), Expect = 2e-77
Identities = 81/353 (22%), Positives = 144/353 (40%), Gaps = 39/353 (11%)
Query: 105 GKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNP 163
P R+ R+L+ G GF+G+HL +RL+ V +D D + +P
Sbjct: 305 NSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHP 360
Query: 164 RFELIRHDV------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 217
F + D+ +E + + D + L A+P+ Y NP++ + + L ++
Sbjct: 361 HFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYC 420
Query: 218 KRVGARFLLTSTSEVYGDPLQHPQAETYWGNV-NPIG-VRSCYDEGKRTAETLTMDYHRG 275
+ R + STSEVYG E + + P+ R Y K+ + + Y
Sbjct: 421 VKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEK 480
Query: 276 LGIEARIARIFNTYGPRM------CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329
G++ + R FN GPR+ I R ++ + + P+ + GKQ R F +
Sbjct: 481 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI 540
Query: 330 SDLVEGLIRLMEGDHVGP----FNLGNPG-EFTMLELAEVVQEIIDRNARIEFRPNTE-- 382
D +E L R++E N+GNP E ++ EL E++ +++ P
Sbjct: 541 RDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGF 600
Query: 383 -------------DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRI 422
D RKP I A + L WEP++ +++ + + F +
Sbjct: 601 RVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 653
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 3e-77
Identities = 89/332 (26%), Positives = 147/332 (44%), Gaps = 29/332 (8%)
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL------IHHFGNPR 164
L L+TG AGF+GS+L+++L+ VI +DN+ TG + NL + R
Sbjct: 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSR 80
Query: 165 FELIRHDV-----VEPILLEVDQIYHLACPASPVHYKF-NPVKTIKTNVVGTLNMLGLAK 218
F I D+ E ++ VD + H A S V +P+ T TN+ G LN+L AK
Sbjct: 81 FCFIEGDIRDLTTCEQVMKGVDHVLHQAALGS-VPRSIVDPITTNATNITGFLNILHAAK 139
Query: 219 RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
F ++S YGD P+ E G NP+ S Y K E Y R G
Sbjct: 140 NAQVQSFTYAASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYG 194
Query: 278 IEARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ R FN +G R + V+ + A L+ + + + GDG+ +R F ++ ++++
Sbjct: 195 FKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQM 254
Query: 336 LIRLMEGDHVGP---FNLGNPGEFTMLELAEVVQEIID-----RNARIEFRPNTEDDPHK 387
I +N+ T+ EL+ + + ++ I++R D
Sbjct: 255 NILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRH 314
Query: 388 RKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419
+ D+TKA LL + P + +R+GL L + +
Sbjct: 315 SQADVTKAIDLLKYRPNIKIREGLRLSMPWYV 346
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 8e-72
Identities = 71/335 (21%), Positives = 134/335 (40%), Gaps = 35/335 (10%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDS--VIVVDNYFTGKKDNLIH--------HFGNPRFE 166
IL+TGGAGFVGS+L + V+V+D + + + + + E
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71
Query: 167 LIRHDVVEPILLE------VDQIYHL-ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR 219
+I D+ P+ L D ++H A + + N +KTN LN+L +A+
Sbjct: 72 VIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTML---NQELVMKTNYQAFLNLLEIARS 128
Query: 220 VGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIE 279
A+ + S++ VYG+ + P N +P + Y K + + +
Sbjct: 129 KKAKVIYASSAGVYGNT-KAPNVVGK--NESPE---NVYGFSKLCMDEFVLSHSNDN--V 180
Query: 280 ARIARIFNTYGPRMCIDDGR---VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336
R FN YGPR + +V A+ + + ++ G+Q R F ++ D+++
Sbjct: 181 QVGLRYFNVYGPRE-FYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQAN 239
Query: 337 IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED-DPHKRKPDITKA 395
++ M+ G +N+G + E+ +++E + + + N + I
Sbjct: 240 VKAMKAQKSGVYNVGYSQARSYNEIVSILKEHLGDFK-VTYIKNPYAFFQKHTQAHIEPT 298
Query: 396 KQLLGWEPRVTLRKGLPLMVADFRHRIFGDQKEAG 430
L + P L G+ + IF Q+ G
Sbjct: 299 ILDLDYTPLYDLESGIKDYLPHIH-AIFKGQRAKG 332
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 3e-69
Identities = 69/308 (22%), Positives = 118/308 (38%), Gaps = 24/308 (7%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFTGKK-DNLIHHFGNPRFELIRHDVVEP 175
I+VTGGAGF+GS++V L D+G + ++VVDN G K NL+ N + + D +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKEDFLIQ 59
Query: 176 ILLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230
I+ V+ I+H +S + + + N + +L FL S++
Sbjct: 60 IMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLYASSA 117
Query: 231 EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
YG P+ + Y K + + R FN YG
Sbjct: 118 ATYGGRTSDFIESR--EYEKPL---NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYG 172
Query: 291 PRMCIDD--GRVVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP 347
PR V + Q + P G R F +V D+ + + +E G
Sbjct: 173 PREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGI 232
Query: 348 FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKP----DITKAKQLLGWEP 403
FNLG + +A+ + +IE+ P + + + D+T + +P
Sbjct: 233 FNLGTGRAESFQAVADATLA-YHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKP 291
Query: 404 RVTLRKGL 411
T+ +G+
Sbjct: 292 FKTVAEGV 299
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 4e-69
Identities = 69/331 (20%), Positives = 125/331 (37%), Gaps = 35/331 (10%)
Query: 118 ILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
ILVTG +G +G+ LV L ++ G ++ + + I DV
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD---------TGGIKFITLDVSNRD 52
Query: 177 LLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 228
++ +D I+HLA S + +P K N+ GT N+L AK+ + ++ S
Sbjct: 53 EIDRAVEKYSIDAIFHLAGILS-AKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111
Query: 229 TSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNT 288
T V+G + ++ R+ + K AE L Y+ G++ R R
Sbjct: 112 TIGVFGPETPKNKVP----SITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167
Query: 289 YGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG 346
+ G A+++E Y + ++ D ++ L+ L E D
Sbjct: 168 ISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDK 227
Query: 347 -----PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKP---DITKAKQL 398
+N+ FT EL ++E I IE++ + D P D ++A
Sbjct: 228 LVLRNGYNVTA-YTFTPSELYSKIKERIP-EFEIEYKEDFRDKIAATWPESLDSSEASNE 285
Query: 399 LGWEPRVTLRKGLPLMVADFRHRIFGDQKEA 429
G+ L + + M+ ++ + K A
Sbjct: 286 WGFSIEYDLDRTIDDMIDHISEKLGIEGKHA 316
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 3e-68
Identities = 68/309 (22%), Positives = 117/309 (37%), Gaps = 24/309 (7%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFTGKK-DNLIHHFGNPRFELIRHDVVE 174
I+VTGGAGF+GS++V L D+G + ++VVDN G K NL+ N + + D +
Sbjct: 48 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKEDFLI 105
Query: 175 PILLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229
I+ V+ I+H +S + + + N + +L FL S+
Sbjct: 106 QIMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLYASS 163
Query: 230 SEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
+ YG P+ + + K + + R FN Y
Sbjct: 164 AATYGGRTSDFIESRE--YEKPL---NVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 218
Query: 290 GPRMCIDD--GRVVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG 346
GPR V + Q + P G R F +V D+ + + +E G
Sbjct: 219 GPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSG 278
Query: 347 PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED----DPHKRKPDITKAKQLLGWE 402
FNLG + +A+ + +IE+ P + + D+T + +
Sbjct: 279 IFNLGTGRAESFQAVADATLA-YHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDK 337
Query: 403 PRVTLRKGL 411
P T+ +G+
Sbjct: 338 PFKTVAEGV 346
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 3e-65
Identities = 52/321 (16%), Positives = 104/321 (32%), Gaps = 32/321 (9%)
Query: 117 RILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
+IL+ G G +G+ L +L G ++ + D + + ++
Sbjct: 4 KILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVV------NSGPFEVVNALDF 57
Query: 176 ILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLT 227
+E + IY +A S + NP N+ ++L LAK +
Sbjct: 58 NQIEHLVEVHKITDIYLMAALLS-ATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWP 116
Query: 228 STSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
S+ V+G + + Y K+ E YH G++ R R
Sbjct: 117 SSIAVFGPTTPKENTP----QYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPG 172
Query: 288 TYGPRMCIDDGR--VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD-- 343
G + +A+ + + + ++ D ++ I +M+
Sbjct: 173 LISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPVE 232
Query: 344 ---HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKP---DITKAKQ 397
+NL FT E+A +++ I I + P+ P D ++A++
Sbjct: 233 KIKIHSSYNLA-AMSFTPTEIANEIKKHIP-EFTITYEPDFRQKIADSWPASIDDSQARE 290
Query: 398 LLGWEPRVTLRKGLPLMVADF 418
W+ L M+
Sbjct: 291 DWDWKHTFDLESMTKDMIEHL 311
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 6e-65
Identities = 90/326 (27%), Positives = 140/326 (42%), Gaps = 36/326 (11%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+LVTGGAGF+GSH+V+ L+ RG V V+DN TGK++N+ R D+ +
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRDKE 56
Query: 177 LLE-------VDQIYHLAC----PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RF 224
+E + H A S V +PV + N++G LN+L ++ G +
Sbjct: 57 GVERAFREFRPTHVSHQAAQASVKVS-VE---DPVLDFEVNLLGGLNLLEACRQYGVEKL 112
Query: 225 LLTSTSE-VYGD-PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARI 282
+ ST +YG+ P ET+ P S Y K E Y + G++
Sbjct: 113 VFASTGGAIYGEVPEGERAEETW--PPRPK---SPYAASKAAFEHYLSVYGQSYGLKWVS 167
Query: 283 ARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLTVYG-----DGKQTRSFQFVSDLVEGL 336
R N YGPR + VV+ F + L+ P+T+Y D R + +V D+ E
Sbjct: 168 LRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAH 227
Query: 337 IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAK 396
+ G +N+G T E+ V E + ++ P D + K
Sbjct: 228 ALALFSLE-GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLM 286
Query: 397 QLLGWEPRVTLRKGLPLMVADFRHRI 422
GW P+V ++G+ L V FR +
Sbjct: 287 A-HGWRPKVGFQEGIRLTVDHFRGAV 311
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 1e-63
Identities = 61/306 (19%), Positives = 104/306 (33%), Gaps = 50/306 (16%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
I++TG GFVG +L L D I + T +++ +E
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEE------------------LESA 43
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
LL+ D I HLA P + + NV ++L + R + + +S +
Sbjct: 44 LLKADFIVHLAGVNRPE----HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ 99
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
NP Y E K E L +Y G I R N +G +
Sbjct: 100 D------------NP------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPN 141
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV---GPFNLGNP 353
V++ F + R E + V D + +V D+V + R +EG G + N
Sbjct: 142 YNSVIATFCYKIARNEEIQVN-DRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPNV 200
Query: 354 GEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPL 413
+ T+ E+ +++ + + R + + L + P L +
Sbjct: 201 FKVTLGEIVDLLYK------FKQSRLDRTLPKLDNLFEKDLYSTYLSYLPSTDFSYPLLM 254
Query: 414 MVADFR 419
V D
Sbjct: 255 NVDDRG 260
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 2e-58
Identities = 81/341 (23%), Positives = 131/341 (38%), Gaps = 43/341 (12%)
Query: 100 HVNAGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH 159
H ++ G VP G +RIL+TGGAG +GS+L++ + +G ++V+DN+ TGK++ L
Sbjct: 8 HHHSSGLVPRG---SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV 64
Query: 160 FGNPRFELIRHDVVEPILLE-------VDQIYHLA----CPASPVHYKFNPVKTIKTNVV 208
+I V + LLE + H A P TNV
Sbjct: 65 ---AGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAED-------AATNVQ 114
Query: 209 GTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAET 267
G++N+ A + G R L T+ YG P P P + Y K E
Sbjct: 115 GSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDS-----PTAPFTSYGISKTAGEA 169
Query: 268 LTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327
M + R+ N GPR+ I G + F + + + R F
Sbjct: 170 FLMMS----DVPVVSLRLANVTGPRLAI--G-PIPTFYKRLKAGQK--CFCSD-TVRDFL 219
Query: 328 FVSDLVEGLIR-LMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNAR--IEFRPNTEDD 384
+SD + L EG G FN+ ++ E+ +VV + + + DD
Sbjct: 220 DMSDFLAIADLSLQEGRPTGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADD 279
Query: 385 PHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFGD 425
D +K + GW+ +V + + +A + D
Sbjct: 280 VPSVVLDPSKTETEFGWKAKVDFKDTITGQLAWYDKYGVTD 320
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 2e-54
Identities = 66/341 (19%), Positives = 116/341 (34%), Gaps = 49/341 (14%)
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRG-------DSVIVVDNYFTGKKDNLIHHFGNP 163
L + + I + G AG VG L RL+ G + ++D + +
Sbjct: 10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF-----SG 64
Query: 164 RFELIRHDVVEPILLE------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA 217
+ D+ P E D I+HLA S + K + N+ GT +
Sbjct: 65 AVDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAEL-DFDKGYRINLDGTRYLFDAI 123
Query: 218 KRVGA------RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD 271
+ R + TS+ V+G PL +P + + P+ + Y K E L D
Sbjct: 124 RIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFH--TTPL---TSYGTQKAICELLLSD 178
Query: 272 YHRGLGIEARIARIFNTYGPRMCIDDGR--VVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329
Y R + R+ + SN + + L + +
Sbjct: 179 YSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASP 238
Query: 330 SDLVEGLIRLME--GDHVGP-FNLGNPGE-FTMLELAEVVQEII--DRNARIEFRPNTED 383
V LI + VGP NL PG T+ E E ++++ A I P +
Sbjct: 239 RSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAVALIRREP---N 295
Query: 384 DPHKR-------KPDITKAKQLLGWEPRVTLRKGLPLMVAD 417
+ R + +A++ LG+ + + + + + D
Sbjct: 296 EMIMRMCEGWAPGFEAKRARE-LGFTAESSFEEIIQVHIED 335
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 3e-53
Identities = 79/379 (20%), Positives = 114/379 (30%), Gaps = 73/379 (19%)
Query: 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---------------- 155
R++V GG G+ G L + V +VDN D+
Sbjct: 8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDR 67
Query: 156 --LIHHFGNPRFELIRHDVVEPILLE-------VDQIYHLACPASP-----VHYKFNPVK 201
EL D+ + L D + H + + V
Sbjct: 68 ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFG--EQRSAPYSMIDRSRAVY 125
Query: 202 TIKTNVVGTLNMLGLAKR--VGARFLLTSTSEVYGDPLQHPQAETY---------WGNVN 250
T NV+GTLN+L K + T YG P E Y
Sbjct: 126 TQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTP-NIDIEEGYITITHNGRTDTLPY 184
Query: 251 PIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRM---------------CI 295
P S Y K + GI A YG +
Sbjct: 185 PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDA 244
Query: 296 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME----GDHVGPFNLG 351
G ++ F QA PLTVYG G QTR + + D V+ + + FN
Sbjct: 245 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQF 304
Query: 352 NPGEFTMLELAEVVQEI-----IDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVT 406
+F++ ELA +V + +D P E + H TK + LG EP
Sbjct: 305 T-EQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYL 362
Query: 407 LRKGLPLMVA---DFRHRI 422
L ++ F+ R+
Sbjct: 363 SDSLLDSLLNFAVQFKDRV 381
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 1e-50
Identities = 85/340 (25%), Positives = 141/340 (41%), Gaps = 50/340 (14%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDN-YFTGKKDNLIHHFGNPRFELIRHDV--- 172
++L+TGG GF+GS+L + +G +IV DN G DNL FE + D+
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 62
Query: 173 --VEPILLE--VDQIYHLACPASPVHYK---FNPVKTIKTNVVGTLNMLGLAKR--VGAR 223
V ++ + D +HL A V NP + NV GTLN+L ++
Sbjct: 63 NDVTRLITKYMPDSCFHL---AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCN 119
Query: 224 FLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEG------------KRTAETLTMD 271
+ +ST++VYGD L+ + + + YDE K A+ +D
Sbjct: 120 IIYSSTNKVYGD-LEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLD 178
Query: 272 YHRGLGIEARIARIFNTYGPR-MCIDDGRVVSNFVAQALRK-----EPLTVYGDGKQTRS 325
Y R G+ + R + YG R D V F +A+ +P T+ G+GKQ R
Sbjct: 179 YARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRD 238
Query: 326 FQFVSDLVEGLIRLMEGDHVGP---FNLG--NPGEFTMLELAEVVQEIIDRNARIEF--- 377
D++ + FN+G ++LEL +++++ + + R
Sbjct: 239 VLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPV 298
Query: 378 RPNTEDDPHKRK--PDITKAKQLLGWEPRVTLRKGLPLMV 415
R + +R DI K + W P+V+ + G+ M
Sbjct: 299 RES-----DQRVFVADIKKITNAIDWSPKVSAKDGVQKMY 333
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 160 bits (408), Expect = 1e-46
Identities = 52/229 (22%), Positives = 81/229 (35%), Gaps = 39/229 (17%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV---- 172
R+LVTG AG VGS + L V + D G + E++ D+
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAH--------EEIVACDLADAQ 55
Query: 173 -VEPILLEVDQIYHLACPASPVHYKFNPV-KTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229
V ++ + D I HL + P ++ N++G N+ A+ +G R + S+
Sbjct: 56 AVHDLVKDCDGIIHLGGVSVE-----RPWNDILQANIIGAYNLYEAARNLGKPRIVFASS 110
Query: 230 SEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
+ G + + +T P S Y K E L Y+ IE RI + +
Sbjct: 111 NHTIGYYPRTTRIDTEVP-RRPD---SLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCF 166
Query: 290 GPRMCIDDGR----VVSNFVAQALRKEPL--------TVYGDGKQTRSF 326
D R +S L K VYG T S+
Sbjct: 167 PKPK---DARMMATWLSVDDFMRLMKRAFVAPKLGCTVVYGASANTESW 212
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-39
Identities = 45/226 (19%), Positives = 73/226 (32%), Gaps = 33/226 (14%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV---- 172
R+LVTG AG +G + +RL + + + D L P E ++ D+
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADL------SPLDPA--GPNEECVQCDLADAN 56
Query: 173 -VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 230
V ++ D I HL V F + ++ N++G N+ A+ G R + S++
Sbjct: 57 AVNAMVAGCDGIVHLG--GISVEKPFEQI--LQGNIIGLYNLYEAARAHGQPRIVFASSN 112
Query: 231 EVYGD-PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
G P P Y K E L Y G E + RI +
Sbjct: 113 HTIGYYPQTERLGPDV-----PARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCT 167
Query: 290 GPRM------CIDDGRVVSNFVAQALRKEPL---TVYGDGKQTRSF 326
+ + R L V+G +
Sbjct: 168 PEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGASANDAGW 213
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 4e-38
Identities = 93/319 (29%), Positives = 141/319 (44%), Gaps = 40/319 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRG------DSVIVVDN--YFTGKKDNLIHHFGNPRFELI 168
R+LVTGGAGF+GSH V +L+ D VIV+D+ Y G + NL +PR +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY-AGNRANLAPVDADPRLRFV 60
Query: 169 RHDV-----VEPILLEVDQIYHLACPA-SPV----HYKFNPVKTIKTNVVGTLNMLGLAK 218
D+ + L VD I H A A S V +TNV GT +L A
Sbjct: 61 HGDIRDAGLLARELRGVDAIVHFA--AESHVDRSIA---GASVFTETNVQGTQTLLQCAV 115
Query: 219 RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
G R + ST++VYG + W +P+ S Y K ++ + YHR G
Sbjct: 116 DAGVGRVVHVSTNQVYGS-IDSG----SWTESSPLEPNSPYAASKAGSDLVARAYHRTYG 170
Query: 278 IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337
++ RI R N YGP + +++ FV L L +YGDG R + D G+
Sbjct: 171 LDVRITRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIA 228
Query: 338 RLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNA-RIEFRPNTEDDP-HKRK--PDI 392
++ G G +++G E T EL ++ + + + + D H + D
Sbjct: 229 LVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRK---VADRKGHDLRYSLDG 285
Query: 393 TKAKQLLGWEPRVTLRKGL 411
K ++ LG+ P+V+ GL
Sbjct: 286 GKIERELGYRPQVSFADGL 304
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 5e-37
Identities = 86/329 (26%), Positives = 144/329 (43%), Gaps = 57/329 (17%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDN--YFTGKKDNLIHHFGNPRFELIR 169
S+++LVTGG GF+GS+ + ++++ VI +D Y NL +PR+ ++
Sbjct: 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGY-GSNPANLKDLEDDPRYTFVK 60
Query: 170 HDV-----VEPILLEVDQIYHLACPA-SPV----HYKFNPVKTIKTNVVGTLNMLGLAKR 219
DV V+ ++ +VD + HLA A S V +P + +NV+GT +L +R
Sbjct: 61 GDVADYELVKELVRKVDGVVHLA--AESHVDRSIS---SPEIFLHSNVIGTYTLLESIRR 115
Query: 220 --VGARFLLTSTSEVYGDPLQHPQ-AETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL 276
RF+ ST EVYGD + E + + S Y K ++ L + + R
Sbjct: 116 ENPEVRFVHVSTDEVYGD-ILKGSFTEN-----DRLMPSSPYSATKAASDMLVLGWTRTY 169
Query: 277 GIEARIARIFNTYG---------PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327
+ A I R N YG P+ I +A + +YG GK R +
Sbjct: 170 NLNASITRCTNNYGPYQFPEKLIPKTII-----------RASLGLKIPIYGTGKNVRDWL 218
Query: 328 FVSDLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNAR-IEFRPNTEDDP 385
+V D V + ++ +N+ E T LE+ +++ ++ + IE ED P
Sbjct: 219 YVEDHVRAIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIEL---VEDRP 275
Query: 386 -HKRK--PDITKAKQLLGWEPRVTLRKGL 411
H + D K + L W P+ T +G+
Sbjct: 276 GHDLRYSLDSWKITRDLKWRPKYTFDEGI 304
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 6e-37
Identities = 53/337 (15%), Positives = 99/337 (29%), Gaps = 50/337 (14%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
+ V G G +G H + G +++ + + I E ++++
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVL-----IHRPSSQIQRLAYLEPECRVAEMLDHA 69
Query: 177 LLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 230
LE +D + A + + + + T + R L ++
Sbjct: 70 GLERALRGLDGVIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSA 127
Query: 231 EVYG-DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTY 289
P P E + + P G +S Y K + + R G+ I
Sbjct: 128 YAMPRHPQGLPGHEGLFYDSLPSG-KSSYVLCKWALDEQAREQARN-GLPVVIGIPGMVL 185
Query: 290 GPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG-PF 348
G D G + E +T Y G R+ ++ GL+ +E +G +
Sbjct: 186 GEL---DIGPTTGRVITAIGNGE-MTHYVAG--QRNVIDAAEAGRGLLMALERGRIGERY 239
Query: 349 NLGNPGEFTMLELAEVVQEIIDRNARIEF----------------------RPNTEDD-- 384
L M +L + E++ + A E
Sbjct: 240 LLTG-HNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETAIE 298
Query: 385 --PHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419
+ D KA++ LG+ L L + FR
Sbjct: 299 VMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFR 335
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 4e-35
Identities = 87/325 (26%), Positives = 134/325 (41%), Gaps = 56/325 (17%)
Query: 117 RILVTGGAGFVGSHLVDRLMDR--GDSVIVVDN--YFTGKKDNLIHHFGNPRFELIRHDV 172
I+VTGGAGF+GS+ V + + V V+D Y G K NL R EL+ D+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTY-AGNKANL-EAILGDRVELVVGDI 63
Query: 173 -----VEPILLEVDQIYHLACPA-SPV----HYKFNPVKTIKTNVVGTLNMLGLAKRVGA 222
V+ + + D I H A A S + +P I TN +GT +L A++
Sbjct: 64 ADAELVDKLAAKADAIVHYA--AESHNDNSLN---DPSPFIHTNFIGTYTLLEAARKYDI 118
Query: 223 RFLLTSTSEVYGD-PLQHPQAETYWGNV------NPIGVRSCYDEGKRTAETLTMDYHRG 275
RF ST EVYGD PL+ G S Y K ++ + + R
Sbjct: 119 RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRS 178
Query: 276 LGIEARIARIFNTYG---------PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326
G++A I+ N YG PR ++N L +YG+GK R +
Sbjct: 179 FGVKATISNCSNNYGPYQHIEKFIPRQ-------ITN----ILAGIKPKLYGEGKNVRDW 227
Query: 327 QFVSDLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNAR-IEFRPNTEDD 384
+D G+ ++ +G + +G GE E+ E++ E + + + D
Sbjct: 228 IHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDH---VTDR 284
Query: 385 P-HKRK--PDITKAKQLLGWEPRVT 406
H + D +K + LGW P+ T
Sbjct: 285 AGHDLRYAIDASKLRDELGWTPQFT 309
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 1e-34
Identities = 89/339 (26%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 103 AGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDN--YFTGKKDNLIH 158
G L Q ++ ILVTGGAGF+GS+ V ++ +I D Y +G +N+
Sbjct: 12 DLGTENLYFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTY-SGNLNNVKS 70
Query: 159 HFGNPRFELIRHDVVEPILLE-------VDQIYHLACPA-SPV----HYKFNPVKTIKTN 206
+P + ++ ++ LLE V I + A A S V NP+ TN
Sbjct: 71 IQDHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFA--AESHVDRSIE---NPIPFYDTN 125
Query: 207 VVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTA 265
V+GT+ +L L K+ + + ST EVYG L + P+ S Y K +A
Sbjct: 126 VIGTVTLLELVKKYPHIKLVQVSTDEVYGS-LGK---TGRFTEETPLAPNSPYSSSKASA 181
Query: 266 ETLTMDYHRGLGIEARIARIFNTYGPR--------MCIDDGRVVSNFVAQALRKEPLTVY 317
+ + + Y++ + + R N YGP + + AL + L +Y
Sbjct: 182 DMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMV----------TNALEGKKLPLY 231
Query: 318 GDGKQTRSFQFVSDLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNAR-I 375
GDG R + V+D + ++ VG +N+G E T +E+ E + ++ + + I
Sbjct: 232 GDGLNVRDWLHVTDHCSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDI 291
Query: 376 EFRPNTEDDP-HKRK--PDITKAKQLLGWEPRVTLRKGL 411
E+ D H R+ + K K WEP+ T +GL
Sbjct: 292 EY---VTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQGL 327
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 6e-33
Identities = 89/335 (26%), Positives = 139/335 (41%), Gaps = 57/335 (17%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL 177
IL+ GGAG++GSH V +L+D G SV+VVDN TG +D + + D+ +
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI-----TEGAKFYNGDLRDKAF 58
Query: 178 LE-------VDQIYHLACPAS---------PVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 221
L ++ + H A A P+ Y N NV G L +L +
Sbjct: 59 LRDVFTQENIEAVMHFA--ADSLVGVSMEKPLQYYNN-------NVYGALCLLEVMDEFK 109
Query: 222 A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEA 280
+F+ +ST+ YG+ E + Y E K E + Y + +
Sbjct: 110 VDKFIFSSTAATYGEVDVDLITEET-----MTNPTNTYGETKLAIEKMLHWYSQASNLRY 164
Query: 281 RIARIFNTYG--PRMCI-DDGRVVSN---FVAQAL--RKEPLTVYG------DGKQTRSF 326
+I R FN G P I +D R ++ V Q ++E + ++G DG R +
Sbjct: 165 KIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDY 224
Query: 327 QFVSDLVEG----LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
V DLV L L G +NLGN F++ E+ + V+E+ + E P
Sbjct: 225 IHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRA 284
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417
DP + KAK+ LGW+PR + ++
Sbjct: 285 GDPARLVASSQKAKEKLGWDPR---YVNVKTIIEH 316
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 9e-31
Identities = 92/348 (26%), Positives = 139/348 (39%), Gaps = 75/348 (21%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRG-DSVIVVDN--YFTGKKDNLIHHFGNPRFELIRHDV- 172
+IL+TGGAGF+GS +V ++ D+V+ +D Y G ++L + R+ D+
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTY-AGNLESLSDISESNRYNFEHADIC 60
Query: 173 ----VEPILLE--VDQIYHLACPA-SPV----HYKFNPVKTIKTNVVGTLNML------- 214
+ I + D + HLA A S V P I+TN+VGT +L
Sbjct: 61 DSAEITRIFEQYQPDAVMHLA--AESHVDRSIT---GPAAFIETNIVGTYALLEVARKYW 115
Query: 215 ---GLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVN------PIGVRSCYDEGKRTA 265
G K+ RF ST EVYGD L HP + S Y K ++
Sbjct: 116 SALGEDKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASS 174
Query: 266 ETLTMDYHRGLGIEARIARIFNTYGPR--------MCIDDGRVVSNFVAQALRKEPLTVY 317
+ L + R G+ + N YGP + I AL +PL +Y
Sbjct: 175 DHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVI----------LNALEGKPLPIY 224
Query: 318 GDGKQTRSFQFVSDLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNARIE 376
G G Q R + +V D L ++ G +N+G E L++ + +++D E
Sbjct: 225 GKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLD-----E 279
Query: 377 FRPNTE----------DDP-HKRK--PDITKAKQLLGWEPRVTLRKGL 411
P D P H R+ D K + LGW+P T G+
Sbjct: 280 IVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGI 327
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-30
Identities = 79/335 (23%), Positives = 134/335 (40%), Gaps = 47/335 (14%)
Query: 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG--NPRFEL 167
S+R L+TG AGFVG +L + L ++ V K N+ +
Sbjct: 7 HHHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRV 66
Query: 168 IRHDVVEPILLEV--DQIYHLACPA-SPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVG-- 221
+ ++ ++ D I+HLA A S V + N T TNV GTL++L +
Sbjct: 67 KK------VISDIKPDYIFHLA--AKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLD 118
Query: 222 ARFLLTSTSEVYG--DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIE 279
R L +SE YG P + P +E N + S Y K + L Y + G++
Sbjct: 119 CRILTIGSSEEYGMILPEESPVSEE-----NQLRPMSPYGVSKASVGMLARQYVKAYGMD 173
Query: 280 ARIARIFNTYGPRMCIDDGR----VVSNFVAQALR-----KEPLTVYGDGKQTRSFQFVS 330
R FN GP + V +F Q + +EP+ G+ + R F V
Sbjct: 174 IIHTRTFNHIGPG------QSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVR 227
Query: 331 DLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNARIE-----FRPNTEDD 384
D+V+ L + G +N+ + + ++ +++ + + E RP+ +
Sbjct: 228 DIVQAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPS---E 284
Query: 385 PHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419
+ K GW+PR+ L K L ++ +R
Sbjct: 285 VPTLIGSNKRLKDSTGWKPRIPLEKSLFEILQSYR 319
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 8e-27
Identities = 72/331 (21%), Positives = 120/331 (36%), Gaps = 51/331 (15%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVV-------DNYFT--GKKDNLIHHFGNPRFEL 167
R+ VTG GF G L L G +V + F D + G+
Sbjct: 11 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGD----- 65
Query: 168 IRH-DVVEPILLEV--DQIYHLACPASP-VH--YKFNPVKTIKTNVVGTLNMLGLAKRVG 221
IR + + + E + ++H+A A P V Y PV+T TNV+GT+ +L + VG
Sbjct: 66 IRDQNKLLESIREFQPEIVFHMA--AQPLVRLSYS-EPVETYSTNVMGTVYLLEAIRHVG 122
Query: 222 --ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR----- 274
+ ++ + Y + +G Y K AE +T Y
Sbjct: 123 GVKAVVNITSDKCYDNKEWIWGYREN----EAMGGYDPYSNSKGCAELVTSSYRNSFFNP 178
Query: 275 GLGIEARIARIFNTYGPRMCIDD---GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331
+ A G + D R+V + + + +P+ + + R +Q V +
Sbjct: 179 ANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVII-RNPHAIRPWQHVLE 237
Query: 332 LVEGLIRLME------GDHVGPFNLGNPGE--FTMLELAEVVQEIIDRNARIEFRPNTED 383
+ G + L + ++ +N G + + E + + A + N
Sbjct: 238 PLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGN--A 295
Query: 384 DPH--KR-KPDITKAKQLLGWEPRVTLRKGL 411
PH K D +KAK LGW PR L L
Sbjct: 296 HPHEAHYLKLDCSKAKMQLGWHPRWNLNTTL 326
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 94.4 bits (236), Expect = 1e-21
Identities = 86/346 (24%), Positives = 131/346 (37%), Gaps = 69/346 (19%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVVE 174
ILVTGGAG++GSH L+ G V++ DN K++ + I DV +
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD 66
Query: 175 PILLE-------VDQIYHLA-------CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV 220
L + H A A P+ Y N N+ L++L + +
Sbjct: 67 ERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRN-------NLDSLLSLLRVMRER 119
Query: 221 GARFLLTSTS-EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR-GLGI 278
+ ++ S+S VYG P + P ET+ P+ + Y + K AE + D
Sbjct: 120 AVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVEAADPSW 174
Query: 279 EARIARIFNTYG--PRMCI-DDGRVVSN----FVAQ-AL-RKEPLTVYG------DGKQT 323
R FN G I +D + N +VAQ A+ + E L V+G DG
Sbjct: 175 RVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGV 234
Query: 324 RSFQFVSDLVEG----LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRP 379
R + V DL G L L D NLG +++LE+ ++ R E
Sbjct: 235 RDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVA 294
Query: 380 NTEDDPHKRKP--------DITKAKQLLGWEPRVTLRKGLPLMVAD 417
R+P + A + +GW+ L + M AD
Sbjct: 295 --------RRPGDVAECYANPAAAAETIGWKAERDLER----MCAD 328
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 3e-20
Identities = 77/393 (19%), Positives = 129/393 (32%), Gaps = 118/393 (30%)
Query: 117 RILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNYFTGKKDNLIHHFGNPRF---------- 165
R+LV GGAG++GSH V L+ D SV++VD+ +
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 166 --------ELIRHDVVEPILLE--------VDQIYHLACPAS---------PVHYKFNPV 200
L DV L +D + H+ A P+ Y N
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMC--AFLAVGESVRDPLKYYDN-- 119
Query: 201 KTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEVYGDPLQ-------------HPQAETYW 246
NVVG L +L + + +S++ ++G+P ++
Sbjct: 120 -----NVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPE-- 172
Query: 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGR------- 299
+P Y E K AE + D GI+ R FN G +DG
Sbjct: 173 ---SP------YGESKLIAERMIRDCAEAYGIKGICLRYFNACG---AHEDGDIGEHYQG 220
Query: 300 -------VVSNFVAQ------------ALRKEPLTVYG------DGKQTRSFQFVSDLVE 334
++ ++ A + + ++G DG R + V DL
Sbjct: 221 STHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLAS 280
Query: 335 G----LIRLMEGDHVGP------FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDD 384
L + + FNLG +++ E+ EV ++ + E D
Sbjct: 281 AHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGD 340
Query: 385 PHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417
P KA+++LGW+P+ L ++
Sbjct: 341 PAYLVAASDKAREVLGWKPK---YDTLEAIMET 370
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 89.0 bits (222), Expect = 8e-20
Identities = 87/348 (25%), Positives = 142/348 (40%), Gaps = 72/348 (20%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVVE 174
R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 175 PILLE-------VDQIYHLAC-------PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV 220
L+ +D + H A P+ Y N NV GTL ++ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLISAMRAA 114
Query: 221 GARFLLTSTSE-VYGDPLQHPQAETYWGNVNPIG-VRSCYDEGKRTAETLTMDYHRGLGI 278
+ + S+S VYGD + P E++ P G +S Y + K E + D +
Sbjct: 115 NVKNFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKA-QP 168
Query: 279 EARIA--RIFNTYG--PRMCI-DDGRVVSN----FVAQ-AL-RKEPLTVYG------DGK 321
+ IA R FN G P + +D + + N ++AQ A+ R++ L ++G DG
Sbjct: 169 DWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGT 228
Query: 322 QTRSFQFVSDLVEG----LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEF 377
R + V DL +G + +L V +NLG ++L++ + + F
Sbjct: 229 GVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHF 288
Query: 378 RPNTEDDPHKRKP--------DITKAKQLLGWEPRVTLRKGLPLMVAD 417
P R+ D +KA + L W + L M D
Sbjct: 289 AP--------RREGDLPAYWADASKADRELNWRV----TRTLDEMAQD 324
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 5e-19
Identities = 83/356 (23%), Positives = 142/356 (39%), Gaps = 78/356 (21%)
Query: 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--------IHHFGNPRFE 166
+ ++LVTGGAG++GSH V L++ G +V+DN+ + + E
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61
Query: 167 LIRHDVVEPILLE-------VDQIYHLA-------CPASPVHYKFNPVKTIKTNVVGTLN 212
D+++ L+ + H A P+ Y N+ GT+
Sbjct: 62 FEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-------NLTGTIQ 114
Query: 213 MLGLAKRVGARFLLTSTSE-VYGDPLQHPQAETYWGNVNPIGVRSC-YDEGKRTAETLTM 270
+L + K G + L+ S+S VYG+P P E + P G + Y + K E +
Sbjct: 115 LLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-----PTGGCTNPYGKSKFFIEEMIR 169
Query: 271 DYHRGLGIEARIA--RIFNTYG--PRMCI-DDGRVVSN----FVAQ-AL-RKEPLTVYG- 318
D + R FN G CI +D + + N +V+Q A+ R+E L V+G
Sbjct: 170 DLCQA-DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGN 228
Query: 319 -----DGKQTRSFQFVSDLVEG----LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEII 369
DG R + V DL +G L +L E +NLG +++L++ + +++
Sbjct: 229 DYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKAS 288
Query: 370 DRNARIEFRPNTEDDPHKRKP--------DITKAKQLLGWEPRVTLRKGLPLMVAD 417
+ + R+ + + A++ LGW GL M D
Sbjct: 289 GKKIPYKVVA--------RREGDVAACYANPSLAQEELGWTA----ALGLDRMCED 332
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 6e-19
Identities = 82/360 (22%), Positives = 135/360 (37%), Gaps = 78/360 (21%)
Query: 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIR 169
+ S +LVTGGAG++GSH V L++ G +V DN D++ +
Sbjct: 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYE 67
Query: 170 HDVVEPILLE-------VDQIYHLA-------CPASPVHYKFNPVKTIKTNVVGTLNMLG 215
D+ + LE +D + H A P+ Y N N++GT+ +L
Sbjct: 68 VDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHN-------NILGTVVLLE 120
Query: 216 LAKRVGARFLLTSTSE-VYGDPLQHPQA----ETYWGNVNPIGVRSCYDEGKRTAETLTM 270
L ++ + S+S VYGD + P E P+G + Y K E +
Sbjct: 121 LMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC-----PLGPTNPYGHTKYAIENILN 175
Query: 271 DYHRGLGIEARIA--RIFNTYG--PRMCI-DDGRVVSN----FVAQ-AL-RKEPLTVYG- 318
D + + A R FN G P I +D + N ++AQ A+ R+E L ++G
Sbjct: 176 DLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGD 235
Query: 319 -----DGKQTRSFQFVSDLVEG----LIRLMEGDHVGP----FNLGNPGEFTMLELAEVV 365
DG R + V DL +G L L + +NLG+ T+ E+
Sbjct: 236 DYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAF 295
Query: 366 QEIIDRNARIEFRPNTEDDPHKRKP--------DITKAKQLLGWEPRVTLRKGLPLMVAD 417
+ + + R+ +AK+ L W+ + + D
Sbjct: 296 CKASGIDLPYKVTG--------RRAGDVLNLTAKPDRAKRELKWQTELQVED----SCKD 343
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 4e-17
Identities = 62/336 (18%), Positives = 117/336 (34%), Gaps = 44/336 (13%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVI--VVDNYFTGKKDNLIH---HFGNPRFELIRHD 171
V GG GFV S LV L+ +G +V V D + + H ++ R D
Sbjct: 11 TACVVGGTGFVASLLVKLLLQKGYAVNTTVRD---PDNQKKVSHLLELQELGDLKIFRAD 67
Query: 172 VVEP-----ILLEVDQIYHLACPASPVHYKF-NPVK-TIKTNVVGTLNMLGLAKRVGA-- 222
+ + + D ++H+ A+PVH+ +P IK + G +N++ R +
Sbjct: 68 LTDELSFEAPIAGCDFVFHV---ATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVK 124
Query: 223 RFLLT-STSEVYGDPLQHPQA---ETYWGNVNPIGVRSC----YDEGKRTAETLTMDYHR 274
R +LT S + V + L E W ++ + Y K AE +
Sbjct: 125 RVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAE 184
Query: 275 GLGIEARIARIFN---TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF--- 328
I+ + + G + D + ++ E L G Q S
Sbjct: 185 ENNID--LITV-IPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIA 241
Query: 329 -VSDLVEGLIRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEII-DRNARIEFRPNTEDDP 385
V D+ I + E + G + ++ ELA+ + + +F + P
Sbjct: 242 HVEDVCRAHIFVAEKESASGRYIC-CAANTSVPELAKFLSKRYPQYKVPTDF---GDFPP 297
Query: 386 HKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHR 421
+ ++ G+ + + + V F+ +
Sbjct: 298 KSKLIISSEKLVKEGFSFKYGIEEIYDESVEYFKAK 333
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 26/174 (14%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVI--VVDNYFTGKKDNLIHHFGNP---RFE-LIRH 170
+LVTG GFV SH+V++L++ G V K NL + RFE +
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHGYKVRGTARS---ASKLANLQKRWDAKYPGRFETAVVE 69
Query: 171 DVVEP-----ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--R 223
D+++ ++ + H+ AS V + + + + GTLN L A + R
Sbjct: 70 DMLKQGAYDEVIKGAAGVAHI---ASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKR 126
Query: 224 FLLT-STSEVYGDPLQHPQA---ETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 273
F+LT ST E W N + + + Y
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSW---NLESIDKAKTLPESDPQKSLWVYA 177
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 1e-15
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 30/156 (19%)
Query: 287 NTYGPRMCID--DGRVVSNFV-----AQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339
N YGP + V+ + A A + + V+G G R F V D+ I +
Sbjct: 165 NLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHV 224
Query: 340 MEGDHV----------GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHK-- 387
ME H N+G + T+ ELA+ + +++ R+ F D K
Sbjct: 225 MELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVF------DASKPD 278
Query: 388 ---RKP-DITKAKQLLGWEPRVTLRKGLPLMVADFR 419
RK D+T+ Q LGW ++L GL F
Sbjct: 279 GTPRKLLDVTRLHQ-LGWYHEISLEAGLASTYQWFL 313
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 3e-15
Identities = 64/320 (20%), Positives = 111/320 (34%), Gaps = 42/320 (13%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIV---VDNYFTGKKDNLIHHFGNP-RFELIRHDV 172
R+ VTGG GF+GS ++ L++ G SV D L + G + D+
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL 62
Query: 173 VEPILLE-----VDQIYHLACPASPVHYKF--NPVKTIKTNVVGTLNMLGLAKRVGA--R 223
P I+H ASP+ + K V G L +L R
Sbjct: 63 SNPDSFAAAIEGCVGIFHT---ASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKR 119
Query: 224 FLLTST--SEVYGDPLQHPQAETYWGNVNPIGVR----SCYDEGKRTAETLTMDYHRGLG 277
F+ TS+ + + + E+ W +V+ + Y K AE +++ G
Sbjct: 120 FIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNG 179
Query: 278 IEARIARIFN---TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS--DL 332
I+ + + G +C S A L G + F V D+
Sbjct: 180 ID--VVTL-ILPFIVGRFVCPKLP--DSIEKALVLVLGKKEQIGVTR----FHMVHVDDV 230
Query: 333 VEGLIRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEII-DRNARIEFRPNTEDDPHKRKP 390
I L+E G +N + E+++++ + I ++ R P
Sbjct: 231 ARAHIYLLENSVPGGRYNCSP-FIVPIEEMSQLLSAKYPEYQ--ILTVDELKEIKGARLP 287
Query: 391 DI-TKAKQLLGWEPRVTLRK 409
D+ TK G++ + T+
Sbjct: 288 DLNTKKLVDAGFDFKYTIED 307
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 8e-15
Identities = 72/333 (21%), Positives = 119/333 (35%), Gaps = 45/333 (13%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVI--VVDNYFTGKKDNLIHHFGNP----RFELIRH 170
+ VTG +GF+GS LV RL++RG +V V D + H P L +
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGYTVRATVRD---PTNVKKVKHLLDLPKAETHLTLWKA 63
Query: 171 DVVEP-----ILLEVDQIYHLACPASPVHYKF-NPVK-TIKTNVVGTLNMLGLAKRVGA- 222
D+ + + ++H+ A+P+ ++ +P IK + G L ++
Sbjct: 64 DLADEGSFDEAIKGCTGVFHV---ATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120
Query: 223 -RFLLT-STSEVYGDPLQ-HPQAETYWGNVNPIGVRSC----YDEGKRTAETLTMDYHRG 275
R + T S V Q E+ W ++ + Y K AE Y +
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 180
Query: 276 LGIEARIARIFN---TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS-- 330
I+ I GP + S A + Y R QFV
Sbjct: 181 NNID--FITI-IPTLVVGPFIMSSMP--PSLITALSPITGNEAHYSI---IRQGQFVHLD 232
Query: 331 DLVEGLIRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEII-DRNARIEFRPNTEDDPHKR 388
DL I L E G + + + +L+LA++++E + N I D+ K
Sbjct: 233 DLCNAHIYLFENPKAEGRYIC-SSHDCIILDLAKMLREKYPEYN--IPTEFKGVDENLKS 289
Query: 389 KPDITKAKQLLGWEPRVTLRKGLPLMVADFRHR 421
+K LG+E + +L V R +
Sbjct: 290 VCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAK 322
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 1e-14
Identities = 40/268 (14%), Positives = 76/268 (28%), Gaps = 27/268 (10%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP--- 175
L+ G G +G+ L + L Y ++ + ++ D+ +P
Sbjct: 5 LIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPA-WHEDNPINYVQCDISDPDDS 63
Query: 176 --ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTS 230
L + + H+ + + N N+L L +
Sbjct: 64 QAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGR 121
Query: 231 EVYGDPL----QHPQAETYWGNVNPIGVRSCYDEGKRTAET-LTMDYHRGLGIEARIARI 285
+ Y P + + + P R Y E + + + G+ + R
Sbjct: 122 KHYMGPFESYGKIESHDPPYTEDLP---RLKYMNFYYDLEDIMLEEVEKKEGLTWSVHRP 178
Query: 286 FNTYGPRMCIDDGRVVSNFVAQALRKE---PLTVYGDGKQTRSFQFVSD---LVEGLIRL 339
N +G V + V A+ K L G + SD + E I
Sbjct: 179 GNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWA 238
Query: 340 MEGDHV--GPFNLGNPGEFTMLELAEVV 365
+ FN+ N F +V+
Sbjct: 239 AVDPYAKNEAFNVSNGDVFKWKHFWKVL 266
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-13
Identities = 40/239 (16%), Positives = 72/239 (30%), Gaps = 41/239 (17%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV---- 172
+I++ G +GFVGS L++ ++RG V V + + N ++ + DV
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAV----VRHPEKI--KIENEHLKVKKADVSSLD 59
Query: 173 -VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 230
V + D + P N + L ++ K+ G RFL+ +
Sbjct: 60 EVCEVCKGADAVISAFNPGW------NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA 113
Query: 231 EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290
++ N K E + I+
Sbjct: 114 GSLFIAPGLRLMDSGEVPENI------LPGVKALGEFYLNFLMKEKEIDWVFFS------ 161
Query: 291 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS--DLVEGLIRLME-GDHVG 346
P + G + L K+ + V G +S D +I +E H
Sbjct: 162 PAADMRPGVRTGRYR---LGKDDMIVDIVGN-----SHISVEDYAAAMIDELEHPKHHQ 212
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 41/212 (19%), Positives = 67/212 (31%), Gaps = 53/212 (25%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVV------DNYFTGKKDNLIHHFGNPRFELIRH 170
+L+TG GF+G +LV L+ R D + ++ + L F + EL+RH
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDAR-RRLEKTFDSGDPELLRH 133
Query: 171 --------------DVVEP-----------ILLEVDQIYHLACPASPVHYKFNP-VKTIK 204
D EP + VD I A + V+ P +
Sbjct: 134 FKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSA---AMVN--AFPYHELFG 188
Query: 205 TNVVGTLNMLGLAKRVG-ARFLLTSTSEVYG----------DPLQHPQAETYWGNVNPIG 253
NV GT ++ +A F ST++V ++ G
Sbjct: 189 PNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGG 248
Query: 254 VRSCYDEGKRTAETLTMDYHRGLGIEARIARI 285
Y K E L + + + + R
Sbjct: 249 ----YGTSKWAGEVLLREANDLCALPVAVFRC 276
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 46/314 (14%), Positives = 89/314 (28%), Gaps = 47/314 (14%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT---GKKDNLIHHFGNPRFELIRHDVV 173
+IL+ G G +G L RL +G V + + ++ R D +
Sbjct: 5 KILIAG-CGDLGLELARRLTAQGHEVTGL----RRSAQPMPAGVQTL---IADVTRPDTL 56
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV 232
I+ +I AS +++ + V G N L + S++ V
Sbjct: 57 ASIVHLRPEILVYCVAAS----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGV 112
Query: 233 YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292
YG ++ E + AE L + I R YGP
Sbjct: 113 YGQEVEEWLDEDTP--PIAKDFSG---KRMLEAEAL------LAAYSSTILRFSGIYGP- 160
Query: 293 MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP----F 348
GR + QA + + D + L++ +
Sbjct: 161 -----GR--LRMIRQAQTP---EQWPARNAWTNRIHRDDGAAFIAYLIQQRSHAVPERLY 210
Query: 349 NLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRV-TL 407
+ + + +L + + P + + +K + G++
Sbjct: 211 IVTDNQPLPVHDLLRWLADRQGIAYPAGATPPVQGN---KKLSNARLLA-SGYQLIYPDY 266
Query: 408 RKGLPLMVADFRHR 421
G ++A R
Sbjct: 267 VSGYGALLAAMREG 280
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVV---DNYFTGKKDNLIHHFGNPRFELIRHDV 172
IL+TGG G G V +++D + I+V D K+ + F +PR DV
Sbjct: 23 TILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDEL---KQSEMAMEFNDPRMRFFIGDV 79
Query: 173 -----VEPILLEVDQIYHLAC----PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A 222
+ L VD H A P + ++NP++ IKTN++G N++ + +
Sbjct: 80 RDLERLNYALEGVDICIHAAALKHVPIA----EYNPLECIKTNIMGASNVINACLKNAIS 135
Query: 223 RFLLTST 229
+ + ST
Sbjct: 136 QVIALST 142
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Length = 381 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 79/338 (23%), Positives = 144/338 (42%), Gaps = 53/338 (15%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSV--IV--VDNYFTGKKDNLI---HHFGNPRFELIRHD 171
L+TG G GS+L + L+ +G V ++ N+ T + +++ H+ +L D
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYAD 91
Query: 172 VVEP-----ILLEV--DQIYHLACPA-SPVHYKF-NPVKTIKTNVVGTLNML------GL 216
+ + + + D++Y+LA A S V F P T G L +L +
Sbjct: 92 LTDASSLRRWIDVIKPDEVYNLA--AQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTI 149
Query: 217 AKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL 276
++ +SE++G PQ+ET P RS Y K A T++Y
Sbjct: 150 DSGRTVKYYQAGSSEMFGS-TPPPQSET-----TPFHPRSPYAASKCAAHWYTVNYREAY 203
Query: 277 GIEARIARIFNTYGPRMCIDDG-----RVVSNFVAQ-ALRKEPLTVYGDGKQTRSFQFVS 330
G+ A +FN PR G R ++ + + + + G+ + +R + F
Sbjct: 204 GLFACNGILFNHESPRR----GENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAG 259
Query: 331 DLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVV--------QEIIDRNARIEFRPNTE 382
D VE + +++ + + + T+ E +V ++ ++ + R FRP E
Sbjct: 260 DYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRY-FRP-AE 317
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV-ADFR 419
D + D +KAK++LGW+P+V K + +MV D
Sbjct: 318 VD--NLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLE 353
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 59/328 (17%), Positives = 106/328 (32%), Gaps = 57/328 (17%)
Query: 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE 174
+ R+LVTG G +G + + + L+ + V
Sbjct: 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR--------PKFEQVNLLDSNAVH 53
Query: 175 PILLEV--DQIYHLACPASPVHYKF------NPVKTIKTNVVGTLNMLGLAKRVGARFLL 226
I+ + I H C A + P + NV + N+ A VGA +
Sbjct: 54 HIIHDFQPHVIVH--CAA----ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIY 107
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
S+ V+ D P E P+ + Y + K E ++ + A + RI
Sbjct: 108 ISSDYVF-DGTNPPYREE--DIPAPLNL---YGKTKLDGEKAVLEN----NLGAAVLRIP 157
Query: 287 NTYGPRMCIDDGRVVSNFVAQALRK-----EPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341
YG ++ + V K + + Q R V D+ +L E
Sbjct: 158 ILYGEV-----EKLEESAVTVMFDKVQFSNKSANMDHW--QQRFPTHVKDVATVCRQLAE 210
Query: 342 GDHVGP-----FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHK-RKP----- 390
+ P F+ + T E+A + + + + RP T+ ++P
Sbjct: 211 KRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPS-SHLRPITDSPVLGAQRPRNAQL 269
Query: 391 DITKAKQLLGWEPRVTLRKGLPLMVADF 418
D +K + L + R G+ + F
Sbjct: 270 DCSKLETLGIGQRT-PFRIGIKESLWPF 296
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-09
Identities = 49/314 (15%), Positives = 97/314 (30%), Gaps = 77/314 (24%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R L+TG +G +G L L +R + + V ++ L +L +E
Sbjct: 2 RTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKL---------DLTDFPRLEDF 52
Query: 177 LLEV--DQIYHLA-------CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 227
+++ D I + A C K K N +++ K + + +
Sbjct: 53 IIKKRPDVIINAAAMTDVDKCEI-------EKEKAYKINAEAVRHIVRAGKVIDSYIVHI 105
Query: 228 STSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
ST V+ D + E NPI Y K ET + + I
Sbjct: 106 STDYVF-DGEKGNYKEE--DIPNPINY---YGLSKLLGETFALQDD---------SLIIR 150
Query: 288 T---YGPRMCIDDGRVVSNFVAQALR----KEPLTVYGDGKQTRSFQFVSDLVEGLIRLM 340
T + + F + + + + S L ++ L+
Sbjct: 151 TSGIFRNK----------GFPIYVYKTLKEGKTVFAF-K--GYYSPISARKLASAILELL 197
Query: 341 EGDHVGPFNLGNPG----EFTMLELAEVVQEIIDRNARIEFRPNTEDDPHK-RKP----- 390
E G ++ E A ++E + ++ E ++P
Sbjct: 198 ELRKTGIIHVAGERISRFEL-----ALKIKEKFNLPGEVK--EVDEVRGWIAKRPYDSSL 250
Query: 391 DITKAKQLLGWEPR 404
D ++A+++L +
Sbjct: 251 DSSRARKILSTDFY 264
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRH 170
L + +R+LV G G V +L+ L ++G + ++ +++
Sbjct: 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVA----MVRNEEQGPELRERGASDIVVA 72
Query: 171 DVVEPI---LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLL 226
++ E +D + A + P KTI ++ G + + A++ G RF++
Sbjct: 73 NLEEDFSHAFASIDAVVFAAG-SGP---HTGADKTILIDLWGAIKTIQEAEKRGIKRFIM 128
Query: 227 TSTSEVYGDPLQHPQA 242
S+ DP Q P
Sbjct: 129 VSSVGT-VDPDQGPMN 143
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-08
Identities = 34/242 (14%), Positives = 71/242 (29%), Gaps = 31/242 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVI-VVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
+I + G G GS +++ +RG V +V N GK + +++ D+ +
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRN--AGKITQT-----HKDINILQKDIFDL 54
Query: 176 ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 235
L L+ V + +V +++ + + LL
Sbjct: 55 TLS------DLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQ 108
Query: 236 PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCI 295
+ + Y + A+ L P
Sbjct: 109 IDEDGNTLLESKGLRE---APYYPTARAQAKQLEHLKSHQAEFSWTYIS------PSAMF 159
Query: 296 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME-GDHVG-PFNLGNP 353
+ G ++ + K+ L DG S + D ++ +E +H+ F +
Sbjct: 160 EPGERTGDYQ---IGKDHLLFGSDGNSFIS---MEDYAIAVLDEIERPNHLNEHFTVAGK 213
Query: 354 GE 355
E
Sbjct: 214 LE 215
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 7e-08
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 14/138 (10%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSVI-VVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-- 175
LVTG G G++L L+++G V +V + + L + D+ +
Sbjct: 18 LVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACS 77
Query: 176 ---ILLEV--DQIYHLACPA-SPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVG--ARFLL 226
+++ ++Y+LA A S V + PV T + +G ++L ++ RF
Sbjct: 78 VQRAVIKAQPQEVYNLA--AQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQ 135
Query: 227 TSTSEVYGDPLQHPQAET 244
STSE++G Q E
Sbjct: 136 ASTSEMFGLIQAERQDEN 153
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 26/168 (15%)
Query: 99 QHVNAGGKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSV--IV--VDNYFTGKKD 154
H ++G + L+TG G GS+L + L+++G V IV ++ TG+ +
Sbjct: 8 HHHSSGRENKYFQGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIE 67
Query: 155 NLI---HHFGNPRFELIRHDVVEP-----ILLEV--DQIYHLACPA-SPVHYKF-NPVKT 202
+L +L D+ + I+ EV +IY+L A S V F T
Sbjct: 68 HLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLG--AQSHVKISFDLAEYT 125
Query: 203 IKTNVVGTLNML------GLAKRVGARFLLTSTSEVYGDPLQHPQAET 244
+ VGTL +L GL V +F STSE+YG + PQ ET
Sbjct: 126 ADVDGVGTLRLLDAVKTCGLINSV--KFYQASTSELYGKVQEIPQKET 171
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 62/328 (18%), Positives = 106/328 (32%), Gaps = 80/328 (24%)
Query: 105 GKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR 164
G + ++IL+TG G +G + +L + VI T +D
Sbjct: 2 GSDKIHHHHHHMKILITGANGQLGREIQKQLKGKNVEVI-----PTDVQD---------- 46
Query: 165 FELIRHDVVEPILLEV--DQIYHLACPASPVHY------KFNPVKTIKTNVVGTLNMLGL 216
++ V E + + + C A + + K N +G N+
Sbjct: 47 LDITNVLAVNKFFNEKKPNVVIN--CAA----HTAVDKCEEQYDLAYKINAIGPKNLAAA 100
Query: 217 AKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL 276
A VGA + ST V+ + P E VNP Y + K E
Sbjct: 101 AYSVGAEIVQISTDYVFDGEAKEPITEF--DEVNPQSA---YGKTKLEGENFVKAL---- 151
Query: 277 GIEARIARIFNT---YGPRMCIDDGRVVSNFVAQALR----KEPLTVYGDGKQTRSFQFV 329
+ I R T YG G NFV + + L V D Q
Sbjct: 152 NPKYYIVR---TAWLYGD------GN---NFVKTMINLGKTHDELKVVHD-------QVG 192
Query: 330 S-----DLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDD 384
+ DL ++++++ + G F+ G + + A + + + ++ P T ++
Sbjct: 193 TPTSTVDLARVVLKVIDEKNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKV--TPCTTEE 250
Query: 385 ---PHKRKP-----DITKAKQLLGWEPR 404
P KR P + G R
Sbjct: 251 FPRPAKR-PKYSVLRNYMLELTTGDITR 277
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 8e-07
Identities = 19/132 (14%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVV----DNYFTGKKDNLIHHFGNPRFELIRHDV 172
+I V G G GS +V RG V+ V + P +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEP------LVL 55
Query: 173 VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE 231
E L VD + + ++ +++ L + + ++
Sbjct: 56 TEADLDSVDAVVDALSVPWGSGRGY-------LHLDFATHLVSLLRNSDTLAVFILGSAS 108
Query: 232 VYGDPLQHPQAE 243
+ HP
Sbjct: 109 LAMPGADHPMIL 120
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 57/313 (18%), Positives = 103/313 (32%), Gaps = 73/313 (23%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+++TG G +G L + L + KK ++ V+ +
Sbjct: 7 RVIITGANGQLGKQLQEELNPEEYDIY-----PFDKKL----------LDITNISQVQQV 51
Query: 177 LLEV--DQIYHLACPASPVHY------KFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228
+ E+ I H C A Y + N +G N+ ++ VGA+ + S
Sbjct: 52 VQEIRPHIIIH--CAA----YTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYIS 105
Query: 229 TSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNT 288
T V+ E N PI + Y K E + H I R + ++
Sbjct: 106 TDYVFQGDRPEGYDEF--HNPAPINI---YGASKYAGEQFVKELHNKYFI-VRTSWLYGK 159
Query: 289 YGPRMCIDDGRVVSNFVAQALR----KEPLTVYGDGKQTRSFQFVS-----DLVEGLIRL 339
YG +NFV +R +E ++V D Q S DL + +L
Sbjct: 160 YG-----------NNFVKTMIRLGKEREEISVVAD-------QIGSPTYVADLNVMINKL 201
Query: 340 MEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDD---PHKRKP-----D 391
+ G +++ N G + E A+ + + + P + ++ R P
Sbjct: 202 IHTSLYGTYHVSNTGSCSWFEFAKKIFSYANMKVNV--LPVSTEEFGAAAAR-PKYSIFQ 258
Query: 392 ITKAKQLLGWEPR 404
+ +
Sbjct: 259 HNMLRLNGFLQMP 271
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Length = 372 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 25/147 (17%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSV--IV--VDNYFTGKKDNLIH--HFGNPRFELIRHDV 172
L+TG G GS+L + L+++G V I ++ T + D++ H NP+F L D+
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDL 64
Query: 173 VEP-----ILLEV--DQIYHLACPA-SPVHYKF-NPVKTIKTNVVGTLNML------GLA 217
+ IL EV D++Y+L A S V F +P T + +GTL +L GL
Sbjct: 65 SDTSNLTRILREVQPDEVYNLG--AMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE 122
Query: 218 KRVGARFLLTSTSEVYGDPLQHPQAET 244
K+ RF STSE+YG + PQ ET
Sbjct: 123 KKT--RFYQASTSELYGLVQEIPQKET 147
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV---- 172
+I + G G VG L+ L + K + + + + + DV
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYA----GARKVEQVPQY---NNVKAVHFDVDWTP 54
Query: 173 --VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229
+ L +D I +++ +K ++ G + ++ A++ RF+L ST
Sbjct: 55 EEMAKQLHGMDAIINVS--------GSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query: 119 LVTGGAGFVGSHLVDRLMDRGDSV--IV--VDNYFTGKKDNLIHHFGNPRFELIRHDVVE 174
L+TG G G++L L+++G V + + + ++I D++E
Sbjct: 7 LITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLK---ELGIENDVKIIHMDLLE 63
Query: 175 P-----ILLEV--DQIYHLACPA-SPVHYKF-NPVKTIKTNVVGTLNMLGLAKRVG--AR 223
+ +V D++Y+LA A S V F P+ T + + +G L +L + V +
Sbjct: 64 FSNIIRTIEKVQPDEVYNLA--AQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTK 121
Query: 224 FLLTSTSEVYGDPLQHPQAET 244
F STSE++G + PQ E
Sbjct: 122 FYQASTSEMFGKVQEIPQTEK 142
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
L + +TG G VG L +L G VI + K+ F +P
Sbjct: 146 SPLTVAITGSRGLVGRALTAQLQTGGHEVIQL----VRKEPKPGKRFWDPLNPASD---- 197
Query: 174 EPILLEVDQIYHLA 187
+L D + HLA
Sbjct: 198 --LLDGADVLVHLA 209
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 6e-06
Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 22/132 (16%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVV--DNYFTGKKDNLIHHFGNPRFELIRHDV-- 172
+I + G G G + + + G V V+ D + + + G ++ DV
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD---SSRLPSE----GPRPAHVVVGDVLQ 57
Query: 173 ---VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 228
V+ + D + L N + G N++ K G + + +
Sbjct: 58 AADVDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110
Query: 229 TSEVYGDPLQHP 240
++ + DP + P
Sbjct: 111 SAFLLWDPTKVP 122
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 29/135 (21%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIV---VDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
+LVTG +G G + +L + D + V + K+ + ++ D+
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS--AQGKEKI-----GGEADVFIGDIT 58
Query: 174 EPILLE-----VDQIYHLA-------------CPASPVHYKFNPVKTIKTNVVGTLNMLG 215
+ + +D + L P + + + +G N +
Sbjct: 59 DADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQID 118
Query: 216 LAKRVG-ARFLLTST 229
AK G ++ +
Sbjct: 119 AAKVAGVKHIVVVGS 133
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 58/315 (18%), Positives = 95/315 (30%), Gaps = 52/315 (16%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
+L G G+ L L +G +I + I G E + EP
Sbjct: 7 TLLSFG-HGYTARVLSRALAPQGWRIIGT--SRNPDQMEAIRASG---AEPLLWPGEEPS 60
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEV 232
L V HL +P +PV L LG A ST+ V
Sbjct: 61 LDGVT---HLLISTAPDSGG-DPV----------LAALGDQIAARAAQFRWVGYLSTTAV 106
Query: 233 YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292
YGD ET + P R G+ + + + R+ YGP
Sbjct: 107 YGDHDGAWVDETTP--LTPTAAR-----GRWRVMAEQQ-WQAVPNLPLHVFRLAGIYGP- 157
Query: 293 MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP-FNLG 351
GR ++ + + Q S V D+ + L M G +N+
Sbjct: 158 -----GR---GPFSKLGKGGIRRI-IKPGQVFSRIHVEDIAQVLAASMARPDPGAVYNVC 208
Query: 352 NPGEFTMLELAEVVQEI--IDRNARIEFRPNTEDDPHK------RKPDITKAKQLLGWEP 403
+ ++ E+ + ++F + ++ + K+ LG
Sbjct: 209 DDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRL 268
Query: 404 RV-TLRKGLPLMVAD 417
+ R GL + AD
Sbjct: 269 KYPNYRVGLEALQAD 283
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 47/287 (16%), Positives = 87/287 (30%), Gaps = 67/287 (23%)
Query: 153 KDNLIHHFGNPRF--ELIRHDVVE---PILL--EVDQIYHLACPASPVHYKFNPVKTIKT 205
KD ++ F F DV + IL E+D I S F + + +
Sbjct: 19 KD-ILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 206 NVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTA 265
+V + R+ +FL++ P Y D
Sbjct: 77 EMVQKF--VEEVLRINYKFLMSPIKTEQRQP--SMMTRMY---------IEQRDRLYNDN 123
Query: 266 ETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP-LTVYGD---GK 321
+ Y+ +R+ R + LR + + G GK
Sbjct: 124 QVFA-KYNV-----SRLQPYLKL---RQAL-----------LELRPAKNVLIDGVLGSGK 163
Query: 322 QTRSFQFVSDLVEGLIRLMEGDHVGPF--NLGN---PGEFTMLELAEVVQEIIDRN--AR 374
+ + M+ F NL N P +LE+ + + ID N +R
Sbjct: 164 TWVALDVCLS--YKVQCKMDF---KIFWLNLKNCNSPET--VLEMLQKLLYQIDPNWTSR 216
Query: 375 IEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHR 421
+ N + H + + ++LL +P L L++ + ++
Sbjct: 217 SDHSSNIKLRIHSIQ---AELRRLLKSKP---YENCL-LVLLNVQNA 256
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 28/175 (16%), Positives = 51/175 (29%), Gaps = 35/175 (20%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVE 174
I + G AG + L L+ D I + + + I + R +I
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITL---YGRQLKTRIPPEIIDHERVTVIEGSFQN 63
Query: 175 PILLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229
P LE + ++ + +++ R R ++ +
Sbjct: 64 PGXLEQAVTNAEVVFV----------------GAMESGSDMASIVKALSRXNIRRVIGVS 107
Query: 230 SEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIAR 284
G + P A W N Y +G+R A + R + I R
Sbjct: 108 M--AGLSGEFPVALEKWTFDNLPIS---YVQGERQAR----NVLRESNLNYTILR 153
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 8e-04
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 14/123 (11%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVV----DNYFTGKKDNLIHHFGNPRFEL 167
++ + + G +G G L+ ++++G V ++ + N+ + FE
Sbjct: 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVD--FEK 74
Query: 168 IRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLL 226
+ D D + K ++ + L LAK G F L
Sbjct: 75 L--DDYASAFQGHDVGFCCLG---TTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNL 129
Query: 227 TST 229
S+
Sbjct: 130 LSS 132
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 447 | |||
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.98 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.97 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.97 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.97 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.97 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.97 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.97 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.97 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.97 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.97 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.96 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.96 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.95 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.95 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.95 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.94 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.94 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.94 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.93 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.92 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.92 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.92 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.92 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.91 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.91 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.91 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.91 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.91 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.9 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.9 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.9 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.9 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.9 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.9 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.9 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.9 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.9 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.89 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.89 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.89 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.89 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.89 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.89 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.89 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.89 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.89 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.88 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.88 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.88 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.88 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.88 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.88 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.88 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.88 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.88 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.88 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.88 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.87 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.87 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.87 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.87 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.87 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.87 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.87 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.87 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.87 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.87 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.87 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.87 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.87 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.87 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.87 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.87 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.87 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.87 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.87 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.87 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.87 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.87 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.87 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.87 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.87 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.87 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.87 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.87 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.87 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.87 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.87 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.87 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.87 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.87 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.87 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.87 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.87 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.86 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.86 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.86 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.86 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.86 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.86 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.86 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.86 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.86 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.86 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.86 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.86 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.86 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.86 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.86 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.86 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.86 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.86 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.86 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.86 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.86 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.86 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.86 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.86 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.86 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.86 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.86 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.86 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.86 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.86 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.86 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.86 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.86 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.86 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.86 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.86 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.86 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.86 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.85 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.85 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.85 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.85 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.85 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.85 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.85 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.85 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.85 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.85 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.85 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.85 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.85 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.85 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.85 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.85 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.85 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.85 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.85 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.85 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.85 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.85 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.85 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.85 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.85 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.85 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.85 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.85 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.85 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.85 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.85 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.85 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.85 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.85 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.85 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.85 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.84 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.84 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.84 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.84 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.84 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.84 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.84 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.84 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.84 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.84 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.84 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.84 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.84 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.84 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.84 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.84 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.84 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.84 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.84 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.83 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.83 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.83 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.83 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.83 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.83 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.83 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.83 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.83 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.83 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.83 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.83 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.83 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.83 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.83 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.83 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.83 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.83 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.83 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.83 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.83 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.82 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.82 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.82 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.82 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.82 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.82 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.82 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.82 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.82 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.82 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.82 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.81 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.81 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.81 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.8 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.8 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.8 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.8 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.79 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.78 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.78 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.78 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.77 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.77 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.77 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.77 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.77 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.74 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.71 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.67 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.67 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.67 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.66 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.65 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.65 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.61 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.61 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.52 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.51 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.49 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.49 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.48 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.42 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.4 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.38 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.12 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.05 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.95 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.76 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.71 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.69 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.67 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.58 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.35 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.31 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.29 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.26 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.21 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.13 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.03 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.86 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.83 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.81 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.75 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.73 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.66 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.66 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.63 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.54 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.49 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.46 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.46 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.45 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.45 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.45 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.42 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.4 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.38 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.37 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.35 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.31 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.27 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.26 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.25 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.24 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.21 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.11 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.07 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.06 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.05 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.04 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.04 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.03 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.0 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.97 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.97 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.95 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.94 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.93 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.91 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.91 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.9 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 96.89 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.89 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.89 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.88 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.87 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.86 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 96.85 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.83 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.83 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.83 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.82 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.82 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.8 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 96.79 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.79 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 96.76 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.75 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.74 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.74 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.73 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.71 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.71 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.7 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.68 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.66 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.6 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 96.57 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.57 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.56 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.56 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.54 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.53 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.48 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.46 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.46 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.44 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.43 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.42 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.38 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.37 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 96.37 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.37 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.33 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.32 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.28 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.26 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.25 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.17 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.14 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.13 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.12 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.11 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.08 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.08 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.07 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.05 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.01 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.0 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.95 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.93 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.92 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 95.91 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 95.87 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.84 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.8 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.77 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.67 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.67 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 95.66 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 95.66 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.66 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.65 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.58 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.52 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.5 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.5 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 95.47 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 95.43 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.4 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 95.39 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.35 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.34 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.32 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 95.31 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.31 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 95.3 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.24 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 95.18 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.15 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 95.14 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.13 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 95.12 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 95.12 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.09 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.08 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.07 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.03 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.0 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.98 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 94.96 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 94.96 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 94.95 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 94.94 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 94.94 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 94.91 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 94.91 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 94.9 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 94.89 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.85 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.85 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 94.82 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 94.8 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 94.77 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 94.7 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 94.7 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 94.65 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 94.63 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 94.62 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 94.59 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 94.57 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 94.54 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 94.52 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 94.49 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.44 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 94.44 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 94.42 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 94.38 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 94.35 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.18 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 94.18 |
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=368.86 Aligned_cols=312 Identities=62% Similarity=1.061 Sum_probs=268.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
.+++|+||||||+||||++|+++|+++|++|++++|........+.......+++++.+|+.+..+.++|+||||||...
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~~~ 103 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPAS 103 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCS
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECccccC
Confidence 35778999999999999999999999999999999975443333322223457899999999999999999999999755
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHH
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD 271 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~ 271 (447)
...+..++...+++|+.++.+++++|++.+++||++||.++||.....+++|+.|....+..+.+.|+.+|+.+|.+++.
T Consensus 104 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~ 183 (343)
T 2b69_A 104 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYA 183 (343)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHHHHHHHHHH
Confidence 43344567788999999999999999998889999999999998777788898776656777778999999999999999
Q ss_pred HHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEec
Q 013226 272 YHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLG 351 (447)
Q Consensus 272 ~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~ 351 (447)
++++.+++++++||+++|||+.......++..++..++.++++.++++++..++|+|++|+|++++.+++++..++||++
T Consensus 184 ~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~i~ 263 (343)
T 2b69_A 184 YMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLG 263 (343)
T ss_dssp HHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSCCSCEEES
T ss_pred HHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcCCCCeEEec
Confidence 98888999999999999999865444567888888889999988888888899999999999999999988777899999
Q ss_pred CCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHhc
Q 013226 352 NPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 352 ~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~~ 423 (447)
+++++|+.|+++.+.+.+|.+..+...|.....+....+|++|++++|||+|.++++|+|+++++|++++..
T Consensus 264 ~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 335 (343)
T 2b69_A 264 NPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 335 (343)
T ss_dssp CCCEEEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCceeCCCCCCCCceecCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877776665555667788999999999999999999999999999987754
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=362.75 Aligned_cols=306 Identities=27% Similarity=0.402 Sum_probs=258.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCC------CceEEEecccccc-----cccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN------PRFELIRHDVVEP-----ILLEV 180 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~------~~v~~~~~D~~~~-----~~~~~ 180 (447)
.+++|+||||||+||||++|+++|+++|++|++++|............... .++.++.+|+.+. ++.++
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV 101 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence 357889999999999999999999999999999999765433322211111 4789999999775 35689
Q ss_pred CEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHH
Q 013226 181 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYD 259 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~ 259 (447)
|+|||+||.........++...+++|+.++.+++++|++.++ +|||+||.++||.....+++|+ .+..+.+.|+
T Consensus 102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~ 176 (351)
T 3ruf_A 102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEE-----NIGNPLSPYA 176 (351)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHHH
T ss_pred CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccC-----CCCCCCChhH
Confidence 999999997554444456778999999999999999999998 9999999999998888888888 5667789999
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC--CchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHH
Q 013226 260 EGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337 (447)
Q Consensus 260 ~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~ 337 (447)
.+|..+|.+++.++++.+++++++||+++|||+..... ..++..++..+..+.++.++++++..++|+|++|+|++++
T Consensus 177 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~ 256 (351)
T 3ruf_A 177 VTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNI 256 (351)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHH
Confidence 99999999999999889999999999999999865332 2678889999999999999999999999999999999999
Q ss_pred HHHcCC---CCCcEEecCCCccCHHHHHHHHHHHhCCC-----CcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHH
Q 013226 338 RLMEGD---HVGPFNLGNPGEFTMLELAEVVQEIIDRN-----ARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRK 409 (447)
Q Consensus 338 ~~l~~~---~~g~~~i~~~~~~s~~el~~~i~~~~g~~-----~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e 409 (447)
.+++++ ..++||+++++.+|+.|+++.+.+.+|.+ ......+..........+|++|++++|||+|+++++|
T Consensus 257 ~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~ 336 (351)
T 3ruf_A 257 LSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIRE 336 (351)
T ss_dssp HHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHHCCCCCCCHHH
T ss_pred HHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHhCCCCCCCHHH
Confidence 999872 34599999999999999999999999983 3333444445566677899999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 013226 410 GLPLMVADFRHRI 422 (447)
Q Consensus 410 ~l~~~~~~~~~~~ 422 (447)
+|+++++||+++.
T Consensus 337 ~l~~~~~~~~~~~ 349 (351)
T 3ruf_A 337 GLRLSMPWYVRFL 349 (351)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-45 Score=357.41 Aligned_cols=304 Identities=26% Similarity=0.445 Sum_probs=251.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCC-ccccccccCCCceEEEeccccccc-----ccC--CC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGK-KDNLIHHFGNPRFELIRHDVVEPI-----LLE--VD 181 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~-----~~~--~d 181 (447)
.+++|+|||||||||||++|+++|+++| ++|++++|..... ...+.......++.++.+|+.+.. +.+ +|
T Consensus 21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence 4577899999999999999999999999 6788888764322 223332233468999999998763 333 99
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCC-CCCCCCCCcCCCCCCCCCCChHH
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDP-LQHPQAETYWGNVNPIGVRSCYD 259 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~-~~~~~~e~~~~~~~~~~~~~~Y~ 259 (447)
+|||+||.........++...+++|+.|+.+++++|++.++ +|||+||.++|+.. ...+++|+ .+..|.+.|+
T Consensus 101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~-----~~~~p~~~Y~ 175 (346)
T 4egb_A 101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEE-----TPLAPNSPYS 175 (346)
T ss_dssp EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTT-----SCCCCCSHHH
T ss_pred EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCC-----CCCCCCChhH
Confidence 99999998655445566778999999999999999999998 89999999999976 45678888 5677889999
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHH
Q 013226 260 EGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339 (447)
Q Consensus 260 ~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~ 339 (447)
.+|..+|.+++.++++.+++++++||+++|||+.. ...++..++..+..+.++.+++++...++|+|++|+|++++.+
T Consensus 176 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 253 (346)
T 4egb_A 176 SSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQY--PEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVV 253 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC--TTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCC--ccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHH
Confidence 99999999999999889999999999999999863 3467888999999999999999999999999999999999999
Q ss_pred HcCCCCC-cEEecCCCccCHHHHHHHHHHHhCCCCc-EEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHH
Q 013226 340 MEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNAR-IEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417 (447)
Q Consensus 340 l~~~~~g-~~~i~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~ 417 (447)
++++..| +||+++++++++.|+++.+.+.+|.+.. +.+.+..........+|++|++++|||+|.++++|+|+++++|
T Consensus 254 ~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~ 333 (346)
T 4egb_A 254 LHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQGLQETVQW 333 (346)
T ss_dssp HHHCCTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_pred HhcCCCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9877654 9999999999999999999999998765 5555555556667789999999999999999999999999999
Q ss_pred HHHHh
Q 013226 418 FRHRI 422 (447)
Q Consensus 418 ~~~~~ 422 (447)
|+++.
T Consensus 334 ~~~~~ 338 (346)
T 4egb_A 334 YEKNE 338 (346)
T ss_dssp HHHCH
T ss_pred HHhhh
Confidence 98764
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-45 Score=355.37 Aligned_cols=299 Identities=27% Similarity=0.444 Sum_probs=258.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC---CCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT---GKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~---~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+++|+|||||||||||++|+++|+++|++|++++|... .....+.......+++++.+|+. ++|+|||+||.
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----~~d~vi~~a~~ 79 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-----DVRLVYHLASH 79 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-----TEEEEEECCCC
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc-----cCCEEEECCcc
Confidence 46789999999999999999999999999999999765 23333333333446667777766 79999999997
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
........++...++ |+.++.+++++|++.++ +|||+||.++|+.....+++|+ .+..+.+.|+.+|..+|.+
T Consensus 80 ~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~ 153 (321)
T 3vps_A 80 KSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPED-----SPLSPRSPYAASKVGLEMV 153 (321)
T ss_dssp CCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHH
T ss_pred CChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCC-----CCCCCCChhHHHHHHHHHH
Confidence 654333445666777 99999999999999997 9999999999998888888888 5677789999999999999
Q ss_pred HHHHHhhhCC-cEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCCc
Q 013226 269 TMDYHRGLGI-EARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP 347 (447)
Q Consensus 269 ~~~~~~~~~i-~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~ 347 (447)
++.++.+.++ +++++||+++|||+.. ...++..++..+..++++.++++++..++|+|++|+|++++.+++++..|+
T Consensus 154 ~~~~~~~~~~~~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~g~ 231 (321)
T 3vps_A 154 AGAHQRASVAPEVGIVRFFNVYGPGER--PDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSV 231 (321)
T ss_dssp HHHHHHSSSSCEEEEEEECEEECTTCC--TTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCCSE
T ss_pred HHHHHHHcCCCceEEEEeccccCcCCC--CCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCCCe
Confidence 9999998899 9999999999999863 256788899999999999999999999999999999999999999887789
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCc-cCCHHHHHHHHHHHHHHHhcCC
Q 013226 348 FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP-RVTLRKGLPLMVADFRHRIFGD 425 (447)
Q Consensus 348 ~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p-~~s~~e~l~~~~~~~~~~~~~~ 425 (447)
||+++++.+|+.|+++.+. .+|.+..+...+..........+|++|++++|||+| .++++|+|+++++||+++....
T Consensus 232 ~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~~~~ 309 (321)
T 3vps_A 232 VNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSRDLDD 309 (321)
T ss_dssp EEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCSCCCCHHHHHHHHHHHHHTSCTTC
T ss_pred EEecCCCcccHHHHHHHHH-HhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhCCCch
Confidence 9999999999999999999 999998888777777778888999999999999999 8899999999999999775443
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=348.81 Aligned_cols=289 Identities=23% Similarity=0.332 Sum_probs=251.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccc----cccccCCCEEEEeccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV----EPILLEVDQIYHLACPA 190 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~----~~~~~~~d~Vih~Ag~~ 190 (447)
+|+||||||+||||++|+++|+++|++|++++|. +.... + .++.++.+|+. +..+.++|+|||+||..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~-~------~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~ 73 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRS-IGNKA-I------NDYEYRVSDYTLEDLINQLNDVDAVVHLAATR 73 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC-CC------------CCEEEECCCCHHHHHHHTTTCSEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCC-CCccc-C------CceEEEEccccHHHHHHhhcCCCEEEEccccC
Confidence 5789999999999999999999999999999997 22222 2 16788888886 22456899999999975
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHH
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLT 269 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~ 269 (447)
... ++.+.+++|+.++.+++++|++.++ ||||+||.++||.....+++|+ .+..|.+.|+.+|..+|.++
T Consensus 74 ~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~ 144 (311)
T 3m2p_A 74 GSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEK-----ELPLPDLMYGVSKLACEHIG 144 (311)
T ss_dssp CSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTT-----SCCCCSSHHHHHHHHHHHHH
T ss_pred CCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCchhHHHHHHHHHHH
Confidence 533 6677889999999999999999998 8999999999998877888888 56777899999999999999
Q ss_pred HHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC-CCCcE
Q 013226 270 MDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD-HVGPF 348 (447)
Q Consensus 270 ~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~-~~g~~ 348 (447)
+.++.+.+++++++||+++|||+... ..++..++..+..+.++.++++++..++|+|++|+|++++.+++++ ..++|
T Consensus 145 ~~~~~~~g~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~ 222 (311)
T 3m2p_A 145 NIYSRKKGLCIKNLRFAHLYGFNEKN--NYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGTF 222 (311)
T ss_dssp HHHHHHSCCEEEEEEECEEECSCC----CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHcCCCEEEEeeCceeCcCCCC--CCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCCCCCeE
Confidence 99998899999999999999998632 2678889999999999999888899999999999999999999988 45699
Q ss_pred EecCCCccCHHHHHHHHHHHhCCCCcEEecCC-CCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHh
Q 013226 349 NLGNPGEFTMLELAEVVQEIIDRNARIEFRPN-TEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 349 ~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~ 422 (447)
|+++++.+|+.|+++.+.+.+|.+..+...+. .........+|++|++++|||+|+++++|+|+++++|++++.
T Consensus 223 ~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 297 (311)
T 3m2p_A 223 NIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLLMRGLD 297 (311)
T ss_dssp EECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHHHHCC--
T ss_pred EeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999888887776 556677788999999999999999999999999999997654
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=347.91 Aligned_cols=293 Identities=32% Similarity=0.547 Sum_probs=245.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc----ccCCCEEEEeccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI----LLEVDQIYHLACPAS 191 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~----~~~~d~Vih~Ag~~~ 191 (447)
|+||||||+||||++|+++|+++|++|++++|......+.. ...+.++.+|+.+.. +.+ |+||||||...
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~~~~ 74 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYSWGAGIKG-DVVFHFAANPE 74 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS-----CTTSEEECCCTTSTTTTTTCCC-SEEEECCSSCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc-----CCCceEEECccccHHHHhhcCC-CEEEECCCCCC
Confidence 68999999999999999999999999999998755433221 346788888887764 234 99999999765
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHH
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTM 270 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 270 (447)
......++...+++|+.++.+++++|++.++ +|||+||.++||.....+++|+ .+..+.+.|+.+|..+|.+++
T Consensus 75 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y~~sK~~~e~~~~ 149 (312)
T 3ko8_A 75 VRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE-----EPYKPISVYGAAKAAGEVMCA 149 (312)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHHHH
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCC-----CCCCCCChHHHHHHHHHHHHH
Confidence 5555567888999999999999999999988 9999999999998888888888 567778999999999999999
Q ss_pred HHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhC-CCeEEecCCCeeEccccHHHHHHHHHHHHcC----CC-
Q 013226 271 DYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG----DH- 344 (447)
Q Consensus 271 ~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~----~~- 344 (447)
.++.+.+++++++||+++|||+.. ..++..++..+..+ ..+..++++++.++|+|++|+|++++.++++ ..
T Consensus 150 ~~~~~~g~~~~~lrp~~v~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~ 226 (312)
T 3ko8_A 150 TYARLFGVRCLAVRYANVVGPRLR---HGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAP 226 (312)
T ss_dssp HHHHHHCCEEEEEEECEEECTTCC---SSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHhCCCEEEEeeccccCcCCC---CChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCC
Confidence 999989999999999999999853 45677788777777 4567788888999999999999999999987 22
Q ss_pred CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCC------CCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHH
Q 013226 345 VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT------EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADF 418 (447)
Q Consensus 345 ~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~------~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~ 418 (447)
.++||+++++.+++.|+++.+.+.+|.+..+...|.. ..+.....+|++|++++|||+|+++++|+|+++++|+
T Consensus 227 ~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~ 306 (312)
T 3ko8_A 227 FLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDL 306 (312)
T ss_dssp EEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCSSCHHHHHHHHHHHH
T ss_pred CcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999999999988877765432 2344556889999999999999999999999999999
Q ss_pred HHHh
Q 013226 419 RHRI 422 (447)
Q Consensus 419 ~~~~ 422 (447)
+++.
T Consensus 307 ~~~~ 310 (312)
T 3ko8_A 307 AKEL 310 (312)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8764
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-44 Score=353.77 Aligned_cols=302 Identities=22% Similarity=0.356 Sum_probs=251.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHh--CCCeEEEEecCCCCC------ccc--cccccCCCceEEEeccccccc----
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMD--RGDSVIVVDNYFTGK------KDN--LIHHFGNPRFELIRHDVVEPI---- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~--~G~~V~~l~r~~~~~------~~~--~~~~~~~~~v~~~~~D~~~~~---- 176 (447)
..+++|+||||||+||||++|+++|++ +|++|++++|..... .+. ........++.++.+|+.+..
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHH
Confidence 356789999999999999999999999 999999999965411 000 011122346789999997752
Q ss_pred --ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 177 --LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
..++|+||||||.... ...++...+++|+.|+.+++++|++.+++|||+||.++||.... +++|+ .+..|
T Consensus 86 ~~~~~~D~vih~A~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~~~~-~~~E~-----~~~~p 157 (362)
T 3sxp_A 86 LEKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTKA-PNVVG-----KNESP 157 (362)
T ss_dssp HTTSCCSEEEECCCCCGG--GCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCSCCS-SBCTT-----SCCCC
T ss_pred hhccCCCEEEECCccCCc--cccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCCCCC-CCCCC-----CCCCC
Confidence 4689999999996432 44578889999999999999999999989999999999998766 88888 56777
Q ss_pred CChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC--CchHHHHHHHHHhCCCeEEecCCCeeEccccHHHH
Q 013226 255 RSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 332 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 332 (447)
.+.|+.+|.++|.+++.++.+ ++++++||+++|||+..... ..++..++..+..+.++.+++++.+.++|+|++|+
T Consensus 158 ~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv 235 (362)
T 3sxp_A 158 ENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDV 235 (362)
T ss_dssp SSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHH
T ss_pred CChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHH
Confidence 899999999999999998765 89999999999999865332 26788899899999888888888899999999999
Q ss_pred HHHHHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCC-CCCCCcccCChHHHHHHcCCCccCCHHHHH
Q 013226 333 VEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT-EDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411 (447)
Q Consensus 333 a~ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l 411 (447)
|++++.+++++..|+||+++++++++.|+++.+.+.+| +..+...|.. ........+|++|++++|||+|.++++|+|
T Consensus 236 a~ai~~~~~~~~~g~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l 314 (362)
T 3sxp_A 236 IQANVKAMKAQKSGVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPLYDLESGI 314 (362)
T ss_dssp HHHHHHHTTCSSCEEEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCCHHHHHHHCCCCCCCHHHHH
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCHHHHHHHhCCCCCCCHHHHH
Confidence 99999999988778999999999999999999999999 7777766655 555667789999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 013226 412 PLMVADFRHRIF 423 (447)
Q Consensus 412 ~~~~~~~~~~~~ 423 (447)
+++++||+++..
T Consensus 315 ~~~~~~~~~~~~ 326 (362)
T 3sxp_A 315 KDYLPHIHAIFK 326 (362)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-44 Score=346.14 Aligned_cols=298 Identities=30% Similarity=0.499 Sum_probs=242.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc----ccCCCEEEEeccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI----LLEVDQIYHLACPA 190 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~----~~~~d~Vih~Ag~~ 190 (447)
+|+||||||+||||++|+++|+++| .+++++++.....+.. ...+.++.+|+.+.. +.++|+|||+|+..
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~~ 74 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFV-----NEAARLVKADLAADDIKDYLKGAEEVWHIAANP 74 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGGS-----CTTEEEECCCTTTSCCHHHHTTCSEEEECCCCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhhc-----CCCcEEEECcCChHHHHHHhcCCCEEEECCCCC
Confidence 3689999999999999999999999 5666665433332221 346788889987632 45799999999965
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHH
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLT 269 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~ 269 (447)
.......++...+++|+.|+.+++++|++.++ +|||+||.++||.....+++|+ .+..+.+.|+.+|..+|.++
T Consensus 75 ~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e~~~ 149 (313)
T 3ehe_A 75 DVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPED-----YPTHPISLYGASKLACEALI 149 (313)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHHHHHH
T ss_pred ChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHH
Confidence 54445567888999999999999999999887 9999999999998888888888 56777899999999999999
Q ss_pred HHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhC-CCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC-Cc
Q 013226 270 MDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV-GP 347 (447)
Q Consensus 270 ~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~-g~ 347 (447)
+.++.+++++++++||+++|||+.. ..++..++..+..+ .++.+++++++.++|+|++|+|++++.+++.... ++
T Consensus 150 ~~~~~~~g~~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~ 226 (313)
T 3ehe_A 150 ESYCHTFDMQAWIYRFANVIGRRST---HGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNI 226 (313)
T ss_dssp HHHHHHTTCEEEEEECSCEESTTCC---CSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCCSSEEE
T ss_pred HHHHHhcCCCEEEEeeccccCcCCC---cChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccCCCCce
Confidence 9999999999999999999999853 35777888887777 5667889999999999999999999999995544 59
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCcEEecCCC---CCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHhcC
Q 013226 348 FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT---EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFG 424 (447)
Q Consensus 348 ~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~---~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~~~ 424 (447)
||+++++++|+.|+++.+.+.+|.+..+.+.+.. ..+.....+|++|+++ |||+|+++++|+|+++++|++++...
T Consensus 227 ~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~~~~ 305 (313)
T 3ehe_A 227 FNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKR-LGWKPRYNSEEAVRMAVRDLVEDLDE 305 (313)
T ss_dssp EECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHHH-HTCCCSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHHH-cCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999988777665432 2334456789999965 89999999999999999999988765
Q ss_pred Ccc
Q 013226 425 DQK 427 (447)
Q Consensus 425 ~~~ 427 (447)
+.+
T Consensus 306 ~~~ 308 (313)
T 3ehe_A 306 EGH 308 (313)
T ss_dssp ---
T ss_pred ccc
Confidence 443
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=347.18 Aligned_cols=304 Identities=24% Similarity=0.352 Sum_probs=251.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc--cCCCceEEEeccccccc-----cc--CCCEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH--FGNPRFELIRHDVVEPI-----LL--EVDQIY 184 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~-----~~--~~d~Vi 184 (447)
++|+||||||+||||++++++|+++|++|++++|......+..... ....++.++.+|+.+.. +. ++|+||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999999999999755433221111 11346788999997763 33 799999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHH
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKR 263 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~ 263 (447)
||||..........+.+.+++|+.++.+++++|++.++ +||++||.++||.....+++|+ .+..+.+.|+.+|.
T Consensus 84 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~Y~~sK~ 158 (341)
T 3enk_A 84 HFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDET-----FPLSATNPYGQTKL 158 (341)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTT-----SCCBCSSHHHHHHH
T ss_pred ECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCC-----CCCCCCChhHHHHH
Confidence 99997654444556778999999999999999999987 9999999999998888888888 56667899999999
Q ss_pred HHHHHHHHHHhhhC-CcEEEEeeccccCCCCcc----C----CCchHHHHHHHHHhC-CCeEEec------CCCeeEccc
Q 013226 264 TAETLTMDYHRGLG-IEARIARIFNTYGPRMCI----D----DGRVVSNFVAQALRK-EPLTVYG------DGKQTRSFQ 327 (447)
Q Consensus 264 ~~E~~~~~~~~~~~-i~~~ivRp~~i~Gp~~~~----~----~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~i 327 (447)
++|.+++.++.+.+ ++++++||+++|||+... . ...++..+....... .++.+++ ++++.++|+
T Consensus 159 ~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i 238 (341)
T 3enk_A 159 MAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYI 238 (341)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEE
T ss_pred HHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeE
Confidence 99999999988875 999999999999996421 1 134455444333332 5667777 788999999
Q ss_pred cHHHHHHHHHHHHcC----CCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCc
Q 013226 328 FVSDLVEGLIRLMEG----DHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~----~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 403 (447)
|++|+|++++.++++ ...++||+++++++|+.|+++.+.+.+|.+.++...+....+.....+|++|++++|||+|
T Consensus 239 ~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 318 (341)
T 3enk_A 239 HVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKA 318 (341)
T ss_dssp EHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHHHCCCC
T ss_pred EHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCCCCCCccccccCHHHHHHHcCCCC
Confidence 999999999999986 3456999999999999999999999999998888877777777788899999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHh
Q 013226 404 RVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 404 ~~s~~e~l~~~~~~~~~~~ 422 (447)
+++++|+|+++++||+++.
T Consensus 319 ~~~l~~~l~~~~~~~~~~~ 337 (341)
T 3enk_A 319 ERDLERMCADHWRWQENNP 337 (341)
T ss_dssp CCCHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999998763
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=350.32 Aligned_cols=295 Identities=25% Similarity=0.315 Sum_probs=247.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYH 185 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih 185 (447)
...++|+||||||+||||++|+++|+++|++|++++|.... .++.++.+|+.+. .+.++|+|||
T Consensus 15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~vih 83 (347)
T 4id9_A 15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVSAVLH 83 (347)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCSEEEE
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCCEEEE
Confidence 45688999999999999999999999999999999996433 3567888888765 3568999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCC--CCCCCCCCCcCCCCCCCCCCChHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGD--PLQHPQAETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~--~~~~~~~e~~~~~~~~~~~~~~Y~~sK 262 (447)
+|+...... ......+++|+.|+.+++++|++.++ +|||+||.++||. ....+++|+ .+..+.+.|+.+|
T Consensus 84 ~A~~~~~~~--~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~-----~~~~~~~~Y~~sK 156 (347)
T 4id9_A 84 LGAFMSWAP--ADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTED-----HPLCPNSPYGLTK 156 (347)
T ss_dssp CCCCCCSSG--GGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTT-----SCCCCCSHHHHHH
T ss_pred CCcccCcch--hhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCC-----CCCCCCChHHHHH
Confidence 999654322 22377999999999999999999998 9999999999998 566778888 5667789999999
Q ss_pred HHHHHHHHHHHhhhCCcEEEEeecccc-------------CCCCccC---------CCchHHHHHHHHHhCCCeEEecCC
Q 013226 263 RTAETLTMDYHRGLGIEARIARIFNTY-------------GPRMCID---------DGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 263 ~~~E~~~~~~~~~~~i~~~ivRp~~i~-------------Gp~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
..+|.+++.++++.+++++++||+++| ||+.... ...++..++.....+.++.+++++
T Consensus 157 ~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 236 (347)
T 4id9_A 157 LLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARN 236 (347)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCC
Confidence 999999999998899999999999999 8764321 246677888888889888888888
Q ss_pred CeeEcc----ccHHHHHHHHHHHHcCCC--CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHH
Q 013226 321 KQTRSF----QFVSDLVEGLIRLMEGDH--VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITK 394 (447)
Q Consensus 321 ~~~~~~----i~v~D~a~ai~~~l~~~~--~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k 394 (447)
...++| +|++|+|++++.+++++. .++||+++++.+|+.|+++.+.+.+|.+..+...|.. +....+|++|
T Consensus 237 ~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~---~~~~~~d~~k 313 (347)
T 4id9_A 237 ENGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPGD---GVYYHTSNER 313 (347)
T ss_dssp TTCCBCEECEEEHHHHHHHHHHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSC---CCBCCBCCHH
T ss_pred CcccCCccCcEeHHHHHHHHHHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCc---ccccccCHHH
Confidence 888899 999999999999999873 4699999999999999999999999988777655533 2367899999
Q ss_pred HHHHcCCCccCCHHHHHHHHHHHHHHHhcCCc
Q 013226 395 AKQLLGWEPRVTLRKGLPLMVADFRHRIFGDQ 426 (447)
Q Consensus 395 ~~~~lG~~p~~s~~e~l~~~~~~~~~~~~~~~ 426 (447)
++++|||+|+++++|+|+++++||+++...++
T Consensus 314 ~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~~ 345 (347)
T 4id9_A 314 IRNTLGFEAEWTMDRMLEEAATARRQRLAKEQ 345 (347)
T ss_dssp HHHHHCCCCCCCHHHHHHHHHHHHHHHCC---
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999999998875543
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-43 Score=340.08 Aligned_cols=294 Identities=31% Similarity=0.480 Sum_probs=246.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----cc--CCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~Ag 188 (447)
|+||||||+||||++++++|+++|++|++++|......+.+ ..++.++.+|+.+.. +. ++|+|||+|+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~ 75 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAA 75 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGS-----CTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhc-----ccCeEEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence 57999999999999999999999999999988543222221 135678889987753 33 7999999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCc-cccCC-CCCCCCCCCcCCCCCCCCCCChHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS-EVYGD-PLQHPQAETYWGNVNPIGVRSCYDEGKRTA 265 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~-~v~g~-~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~ 265 (447)
.........++...+++|+.|+.+++++|++.++ +||++||. ++||. ....+++|+ .+..+.+.|+.+|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~ 150 (311)
T 2p5y_A 76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEET-----WPPRPKSPYAASKAAF 150 (311)
T ss_dssp CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTT-----SCCCCCSHHHHHHHHH
T ss_pred ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCC-----CCCCCCChHHHHHHHH
Confidence 6543223346678899999999999999999887 99999999 89986 455577777 4555678999999999
Q ss_pred HHHHHHHHhhhCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCCCeEEe-----cCCCeeEccccHHHHHHHHHHH
Q 013226 266 ETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEPLTVY-----GDGKQTRSFQFVSDLVEGLIRL 339 (447)
Q Consensus 266 E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~v~D~a~ai~~~ 339 (447)
|.+++.++++.+++++++||+++|||+..... ..++..++..+..+.++.++ +++.+.++|+|++|+|++++.+
T Consensus 151 e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~ 230 (311)
T 2p5y_A 151 EHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALA 230 (311)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHH
Confidence 99999998888999999999999999864332 34677788888888888888 8888889999999999999999
Q ss_pred HcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHH
Q 013226 340 MEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419 (447)
Q Consensus 340 l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~ 419 (447)
++++ .++||+++++.+|+.|+++.+.+.+|.+.++...|....+.....+|++|+++ |||+|.++++|+|+++++|++
T Consensus 231 ~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~-lg~~p~~~~~~~l~~~~~~~~ 308 (311)
T 2p5y_A 231 LFSL-EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLMA-HGWRPKVGFQEGIRLTVDHFR 308 (311)
T ss_dssp HHHC-CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCCTTCCSBCCBCCHHHHT-TTCCCSSCHHHHHHHHHHHHH
T ss_pred HhCC-CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCCccchhhccCCHHHHHH-CCCCCCCCHHHHHHHHHHHHH
Confidence 9875 67999999999999999999999999887777666655566677899999999 999999999999999999997
Q ss_pred HH
Q 013226 420 HR 421 (447)
Q Consensus 420 ~~ 421 (447)
++
T Consensus 309 ~~ 310 (311)
T 2p5y_A 309 GA 310 (311)
T ss_dssp TC
T ss_pred hh
Confidence 53
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=340.52 Aligned_cols=301 Identities=26% Similarity=0.442 Sum_probs=244.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCC-CccccccccCCCceEEEeccccccc-----ccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTG-KKDNLIHHFGNPRFELIRHDVVEPI-----LLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~-----~~~~d~Vih 185 (447)
++|+||||||+||||++|+++|+++| ++|++++|.... ..+.+.......++.++.+|+.+.. +.++|+|||
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 81 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH 81 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence 46789999999999999999999997 899999986422 2222221112347889999998753 457999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKR 263 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~ 263 (447)
|||.........++...+++|+.|+.+++++|++.+. +||++||.++||.....+++|+ .+..+.+.|+.+|+
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK~ 156 (336)
T 2hun_A 82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATKA 156 (336)
T ss_dssp CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTT-----BCCCCCSHHHHHHH
T ss_pred CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCC-----CCCCCCCccHHHHH
Confidence 9996542222345678999999999999999998763 9999999999997766778887 45666789999999
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.+|.+++.++.+++++++++||+++|||+.. ...++..++..+..+.++++++++.+.++|+|++|+|++++.+++++
T Consensus 157 ~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~ 234 (336)
T 2hun_A 157 ASDMLVLGWTRTYNLNASITRCTNNYGPYQF--PEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKG 234 (336)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECEEESTTCC--TTSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCEEEEeeeeeeCcCCC--cCchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCC
Confidence 9999999999888999999999999999852 24567778888888888888888888899999999999999999866
Q ss_pred CC-CcEEecCCCccCHHHHHHHHHHHhCCCCc-EEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHH
Q 013226 344 HV-GPFNLGNPGEFTMLELAEVVQEIIDRNAR-IEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 344 ~~-g~~~i~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~ 421 (447)
.. ++||+++++++|+.|+++.+.+.+|.+.+ +.+.+..........+|++|++++|||+|.++++|+|+++++|++++
T Consensus 235 ~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~ 314 (336)
T 2hun_A 235 ESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKN 314 (336)
T ss_dssp CTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC
Confidence 54 49999999999999999999999998653 44444333333456789999999999999999999999999999865
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=350.26 Aligned_cols=306 Identities=26% Similarity=0.377 Sum_probs=245.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYH 185 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih 185 (447)
.+++|+||||||+||||++|+++|+++| ++|++++|......+.+. ...++.++.+|+.+. ++.++|+|||
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~---~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih 105 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFH 105 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC---CCTTEEEECSCTTCHHHHHHCCSCCSEEEE
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc---CCCceEEEECCCCCHHHHHHHhhCCCEEEE
Confidence 4678999999999999999999999999 999999997543322221 135788999998775 4568999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEeCccccCCCCCCCCC--CCcCCCCCCC-CCCChHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPLQHPQA--ETYWGNVNPI-GVRSCYDE 260 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g~-r~v~~SS~~v~g~~~~~~~~--e~~~~~~~~~-~~~~~Y~~ 260 (447)
|||.........++.+.+++|+.++.+++++|++. ++ +||++||.++||.....+++ |+.|. .+. .+.+.|+.
T Consensus 106 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~~~~~~~Y~~ 183 (377)
T 2q1s_A 106 LATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDI--VSLHNNDSPYSM 183 (377)
T ss_dssp CCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCC--CCSSCCCSHHHH
T ss_pred CCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCccccccc--ccccCCCCchHH
Confidence 99965433223467789999999999999999998 87 99999999999987666777 77542 144 56689999
Q ss_pred HHHHHHHHHHHHHhhhCCcEEEEeeccccCCCC---------ccC--CCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 261 GKRTAETLTMDYHRGLGIEARIARIFNTYGPRM---------CID--DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 261 sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~---------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
+|..+|.+++.++.+.+++++++||+++|||+. ... ...++..++..+..+.++.++++++..++|+|+
T Consensus 184 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 263 (377)
T 2q1s_A 184 SKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFV 263 (377)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEH
Confidence 999999999999888899999999999999986 211 045678888888888888888888899999999
Q ss_pred HHHHHH-HHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCC-cccCChHHHHHHcCCCccCCH
Q 013226 330 SDLVEG-LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPH-KRKPDITKAKQLLGWEPRVTL 407 (447)
Q Consensus 330 ~D~a~a-i~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~-~~~~d~~k~~~~lG~~p~~s~ 407 (447)
+|+|++ ++.+++++..|+||+++++++|+.|+++.+.+.+|.+..+...|....... ...+|++|++++|||+|.+++
T Consensus 264 ~Dva~a~i~~~~~~~~~g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d~~k~~~~lG~~p~~~l 343 (377)
T 2q1s_A 264 EDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADVSI 343 (377)
T ss_dssp HHHHHHHHHHHHHCCTTEEEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCCCHHHHHHHCCCCCCCH
T ss_pred HHHHHHHHHHHHhcCCCCeEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccCHHHHHHHcCCCCCCCH
Confidence 999999 999998776679999999999999999999999998776655554334444 678899999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 013226 408 RKGLPLMVADFRHRI 422 (447)
Q Consensus 408 ~e~l~~~~~~~~~~~ 422 (447)
+|+|+++++|++++.
T Consensus 344 ~e~l~~~~~~~~~~~ 358 (377)
T 2q1s_A 344 DDGLRKTIEWTKANL 358 (377)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-43 Score=344.78 Aligned_cols=306 Identities=25% Similarity=0.360 Sum_probs=251.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc---ccC---CCceEEEecccccc-----cccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH---HFG---NPRFELIRHDVVEP-----ILLEV 180 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~---~~~---~~~v~~~~~D~~~~-----~~~~~ 180 (447)
++++|+||||||+||||++|+++|+++|++|++++|......+.+.. ... ..++.++.+|+.+. .+.++
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence 45778999999999999999999999999999999965432221111 010 14688899998765 35689
Q ss_pred CEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHH
Q 013226 181 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYD 259 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~ 259 (447)
|+||||||.........++...+++|+.++.+++++|++.++ +||++||.++|+.....+++|+ .+..+.+.|+
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~-----~~~~~~~~Y~ 178 (352)
T 1sb8_A 104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLSPYA 178 (352)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHHH
T ss_pred CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCC-----CCCCCCChhH
Confidence 999999996543223346778899999999999999999987 9999999999998776788888 4556778999
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC--CCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHH
Q 013226 260 EGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337 (447)
Q Consensus 260 ~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~ 337 (447)
.+|..+|.+++.++.+.+++++++||+++|||+.... ...++..++..+..+.++.++++++..++|+|++|+|++++
T Consensus 179 ~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~ 258 (352)
T 1sb8_A 179 VTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANL 258 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHH
Confidence 9999999999999888899999999999999986432 23567778888888988888888889999999999999999
Q ss_pred HHHcCC---CCCcEEecCCCccCHHHHHHHHHHHh---CCCCcE--EecCCCCCCCCcccCChHHHHHHcCCCccCCHHH
Q 013226 338 RLMEGD---HVGPFNLGNPGEFTMLELAEVVQEII---DRNARI--EFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRK 409 (447)
Q Consensus 338 ~~l~~~---~~g~~~i~~~~~~s~~el~~~i~~~~---g~~~~~--~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e 409 (447)
.++++. ..++||+++++.+|+.|+++.+.+.+ |.+... .+.+..........+|++|++++|||+|+++++|
T Consensus 259 ~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e 338 (352)
T 1sb8_A 259 LAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYDVSA 338 (352)
T ss_dssp HHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCCCCHHH
T ss_pred HHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhccCCHHHHHHHhCCCCCCCHHH
Confidence 998862 34599999999999999999999999 877552 2333333445567789999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 013226 410 GLPLMVADFRHRI 422 (447)
Q Consensus 410 ~l~~~~~~~~~~~ 422 (447)
+|+++++||+++.
T Consensus 339 ~l~~~~~~~~~~~ 351 (352)
T 1sb8_A 339 GVALAMPWYIMFL 351 (352)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=337.54 Aligned_cols=299 Identities=29% Similarity=0.470 Sum_probs=247.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC---C---CeEEEEecCCCCC-ccccccccCCCceEEEecccccc-----cccCCCEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR---G---DSVIVVDNYFTGK-KDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQI 183 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~---G---~~V~~l~r~~~~~-~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~V 183 (447)
|+||||||+||||++|+++|+++ | ++|++++|..... .+.+.......++.++.+|+.+. .+.++|+|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 80 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence 57999999999999999999997 8 9999999864321 12222111235788999999775 34689999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHH
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK 262 (447)
|||||.........++.+.+++|+.|+.+++++|++.++ +|||+||.++||.....+++|+ .+..+.+.|+.+|
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK 155 (337)
T 1r6d_A 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASK 155 (337)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHHH
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCC-----CCCCCCCchHHHH
Confidence 999996543222345678999999999999999999998 9999999999997666677777 4666778999999
Q ss_pred HHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcC
Q 013226 263 RTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 263 ~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
..+|.+++.++.+++++++++||+++|||+.. ...++..++..+..+.++.+++++++.++|+|++|+|++++.++++
T Consensus 156 ~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 233 (337)
T 1r6d_A 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQH--PEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233 (337)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTCC--TTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeeeeECCCCC--CCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhC
Confidence 99999999999888999999999999999853 2456778888888888888888888899999999999999999986
Q ss_pred CCC-CcEEecCCCccCHHHHHHHHHHHhCCCCc-EEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHH
Q 013226 343 DHV-GPFNLGNPGEFTMLELAEVVQEIIDRNAR-IEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420 (447)
Q Consensus 343 ~~~-g~~~i~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~ 420 (447)
+.. ++||+++++++|+.|+++.+.+.+|.+.+ +.+.+..........+|++|++++|||+|.++++|+|+++++|+++
T Consensus 234 ~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~ 313 (337)
T 1r6d_A 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRE 313 (337)
T ss_dssp CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Confidence 654 49999999999999999999999998753 4444433333344568999999999999999999999999999986
Q ss_pred H
Q 013226 421 R 421 (447)
Q Consensus 421 ~ 421 (447)
+
T Consensus 314 ~ 314 (337)
T 1r6d_A 314 N 314 (337)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=336.86 Aligned_cols=292 Identities=26% Similarity=0.391 Sum_probs=242.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----cc--CCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih 185 (447)
.+.|+||||||+||||++|+++|+++|++|++++|.... . . + ++.++.+|+.+.. +. ++|+|||
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~-~----l---~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 80 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-K-L----P---NVEMISLDIMDSQRVKKVISDIKPDYIFH 80 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-C-C----T---TEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-c-c----c---eeeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence 466889999999999999999999999999999997543 1 1 1 6788999997753 33 3899999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEeCccccCCC--CCCCCCCCcCCCCCCCCCCChHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDP--LQHPQAETYWGNVNPIGVRSCYDEG 261 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g~-r~v~~SS~~v~g~~--~~~~~~e~~~~~~~~~~~~~~Y~~s 261 (447)
|||.........++...+++|+.|+.+++++|++. ++ +||++||.++|+.. ...+++|+ .+..+.+.|+.+
T Consensus 81 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~-----~~~~~~~~Y~~s 155 (321)
T 2pk3_A 81 LAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEE-----NQLRPMSPYGVS 155 (321)
T ss_dssp CCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTT-----SCCBCCSHHHHH
T ss_pred cCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCC-----CCCCCCCccHHH
Confidence 99975433334467889999999999999999876 45 99999999999876 56778888 456677899999
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHh---C--CCeEEecCCCeeEccccHHHHHHHH
Q 013226 262 KRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALR---K--EPLTVYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 262 K~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~i~v~D~a~ai 336 (447)
|+++|.+++.++.+++++++++||+++|||+... ..++..++..+.. + .++..++++...++|+|++|+|+++
T Consensus 156 K~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~ 233 (321)
T 2pk3_A 156 KASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSL--GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAY 233 (321)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCT--TSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCC--CchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHH
Confidence 9999999999988889999999999999998632 3456667766666 6 5777788888899999999999999
Q ss_pred HHHHcCCCC-CcEEecCCCccCHHHHHHHHHHHhCCCCcEEecC--CCCCCCCcccCChHHHHHHcCCCccCCHHHHHHH
Q 013226 337 IRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRP--NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPL 413 (447)
Q Consensus 337 ~~~l~~~~~-g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~ 413 (447)
+.+++++.. ++||+++++.+++.|+++.+.+.+|.+..+...| ..........+|++|++++|||+|.++++|+|++
T Consensus 234 ~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~ 313 (321)
T 2pk3_A 234 WLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLEKSLFE 313 (321)
T ss_dssp HHHHHHCCTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHHHCCCCCSCHHHHHHH
T ss_pred HHHHhCCCCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHHcCCCcCCCHHHHHHH
Confidence 999987643 5999999999999999999999999877766555 2333445678899999999999999999999999
Q ss_pred HHHHHHH
Q 013226 414 MVADFRH 420 (447)
Q Consensus 414 ~~~~~~~ 420 (447)
+++|+++
T Consensus 314 ~~~~~~~ 320 (321)
T 2pk3_A 314 ILQSYRQ 320 (321)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999875
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-43 Score=339.28 Aligned_cols=295 Identities=22% Similarity=0.281 Sum_probs=243.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccC--CCEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLE--VDQIY 184 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~--~d~Vi 184 (447)
.+++|+||||||+||||++|+++|+++|+ +. ... ...++++.+|+.+. .+.+ +|+||
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~----~~~------~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vi 66 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LP----GED------WVFVSSKDADLTDTAQTRALFEKVQPTHVI 66 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CT----TCE------EEECCTTTCCTTSHHHHHHHHHHSCCSEEE
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC------cc----ccc------ccccCceecccCCHHHHHHHHhhcCCCEEE
Confidence 46789999999999999999999999998 10 000 01233445666554 3443 99999
Q ss_pred EeccCCCC-CCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCC-hHHHH
Q 013226 185 HLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRS-CYDEG 261 (447)
Q Consensus 185 h~Ag~~~~-~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~-~Y~~s 261 (447)
|+||.... .....++.+.+++|+.|+.+++++|++.++ +|||+||.++||.....+++|+.+... +..+.+ .|+.+
T Consensus 67 h~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~-~~~p~~~~Y~~s 145 (319)
T 4b8w_A 67 HLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNG-PPHNSNFGYSYA 145 (319)
T ss_dssp ECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBS-CCCSSSHHHHHH
T ss_pred ECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccC-CCCCCcchHHHH
Confidence 99997532 123456778999999999999999999998 999999999999888888998854221 333334 69999
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC--CCchHHHHHHH----HHhCCCeEEecCCCeeEccccHHHHHHH
Q 013226 262 KRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID--DGRVVSNFVAQ----ALRKEPLTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 262 K~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~v~D~a~a 335 (447)
|..+|.+++.++++.+++++++||+++|||+.... ...++..++.. +..+.++.++++++..++|+|++|+|++
T Consensus 146 K~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a 225 (319)
T 4b8w_A 146 KRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQL 225 (319)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHH
Confidence 99999999999998999999999999999987532 24566777766 7889999999999999999999999999
Q ss_pred HHHHHcCCC---CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHH
Q 013226 336 LIRLMEGDH---VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLP 412 (447)
Q Consensus 336 i~~~l~~~~---~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~ 412 (447)
++.+++++. .++||+++++++|+.|+++.+.+.+|.+..+.+.+..........+|++|++++|||+|.++++|+|+
T Consensus 226 ~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l~ 305 (319)
T 4b8w_A 226 FIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQAVK 305 (319)
T ss_dssp HHHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTSCCCCSCCCBCCHHHHHHCTTCCCCCHHHHHH
T ss_pred HHHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCCCcCcccccCCHHHHHHhcCCCCCCCHHHHHH
Confidence 999998743 34899999999999999999999999988888877666666777899999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 013226 413 LMVADFRHRIF 423 (447)
Q Consensus 413 ~~~~~~~~~~~ 423 (447)
++++||+++..
T Consensus 306 ~~~~~~~~~~~ 316 (319)
T 4b8w_A 306 ETCAWFTDNYE 316 (319)
T ss_dssp HHHHHHHHSCS
T ss_pred HHHHHHHHHHh
Confidence 99999998754
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=353.11 Aligned_cols=307 Identities=25% Similarity=0.430 Sum_probs=251.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCceEEEecccc-cc-----cccCCCEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV-EP-----ILLEVDQIY 184 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~-~~-----~~~~~d~Vi 184 (447)
.+++|+||||||+||||++|+++|+++ |++|++++|....... .....+++++.+|+. +. ++.++|+||
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vi 96 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGD----LVKHERMHFFEGDITINKEWVEYHVKKCDVIL 96 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGG----GGGSTTEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhh----hccCCCeEEEeCccCCCHHHHHHHhccCCEEE
Confidence 457889999999999999999999998 9999999996543222 122357999999998 54 345799999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCC-CCCCC-CCCChHHHHH
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWG-NVNPI-GVRSCYDEGK 262 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~-~~~~~-~~~~~Y~~sK 262 (447)
||||......+..++.+.+++|+.++.+++++|++.+.||||+||.++||.....+++|+.+. ...+. .|.+.|+.+|
T Consensus 97 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~sK 176 (372)
T 3slg_A 97 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSK 176 (372)
T ss_dssp ECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHHHH
T ss_pred EcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHHHH
Confidence 999976655455677889999999999999999998889999999999998877788887532 11122 4557899999
Q ss_pred HHHHHHHHHHHhhhCCcEEEEeeccccCCCCcc------CCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHH
Q 013226 263 RTAETLTMDYHRGLGIEARIARIFNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 263 ~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai 336 (447)
..+|.+++.++.+ +++++++||+++|||+... ....++..++..+..+.++.++++++..++|+|++|+|+++
T Consensus 177 ~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~ 255 (372)
T 3slg_A 177 QLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISAL 255 (372)
T ss_dssp HHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHH
Confidence 9999999999887 9999999999999998642 23457888999999999999999888999999999999999
Q ss_pred HHHHcCCC----CCcEEecCC-CccCHHHHHHHHHHHhCCCCcEEecCC---------------CCCCCCcccCChHHHH
Q 013226 337 IRLMEGDH----VGPFNLGNP-GEFTMLELAEVVQEIIDRNARIEFRPN---------------TEDDPHKRKPDITKAK 396 (447)
Q Consensus 337 ~~~l~~~~----~g~~~i~~~-~~~s~~el~~~i~~~~g~~~~~~~~~~---------------~~~~~~~~~~d~~k~~ 396 (447)
+.+++++. .++||++++ +.+|+.|+++.+.+.+|.+..+...+. ...+.....+|++|++
T Consensus 256 ~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 335 (372)
T 3slg_A 256 MKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTM 335 (372)
T ss_dssp HHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC-------------CCCCBCCHHHH
T ss_pred HHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccCCccccceeecCHHHHH
Confidence 99999863 469999995 799999999999999987654321110 0124446678999999
Q ss_pred HHcCCCccCCHHHHHHHHHHHHHHHhc
Q 013226 397 QLLGWEPRVTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 397 ~~lG~~p~~s~~e~l~~~~~~~~~~~~ 423 (447)
++|||+|+++++|+|+++++||+++..
T Consensus 336 ~~lG~~p~~~l~e~l~~~~~~~~~~~~ 362 (372)
T 3slg_A 336 QELGWAPQFTFDDALRQIFEAYRGHVA 362 (372)
T ss_dssp HHHTCCCCCCHHHHHHHHHHHHTTCHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987653
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=339.01 Aligned_cols=300 Identities=24% Similarity=0.396 Sum_probs=245.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A 187 (447)
+|+||||||+||||++|+++|+++ |++|++++|................++.++.+|+.+. .+.++|+|||||
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 83 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYA 83 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECC
Confidence 478999999999999999999999 8999999996432221111122235788999999875 356799999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCC------------CCCCCCcCCCCCCCCCC
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ------------HPQAETYWGNVNPIGVR 255 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~------------~~~~e~~~~~~~~~~~~ 255 (447)
|.........++...+++|+.|+.+++++|++.+++|||+||.++||.... .+++|+ .+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~-----~~~~~~ 158 (348)
T 1oc2_A 84 AESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAE-----TNYNPS 158 (348)
T ss_dssp SCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTT-----SCCCCC
T ss_pred cccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeCCCcccccccccccccCCCcCCC-----CCCCCC
Confidence 965432223456789999999999999999998889999999999986432 456666 456677
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHH
Q 013226 256 SCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a 335 (447)
+.|+.+|..+|.+++.++.+++++++++||+++|||+.. ...++..++..+..+.++.+++++...++|+|++|+|++
T Consensus 159 ~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~ 236 (348)
T 1oc2_A 159 SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQH--IEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTG 236 (348)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCC--TTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCC--ccchHHHHHHHHHcCCCceEecCCCceEeeEEHHHHHHH
Confidence 899999999999999999888999999999999999853 245677888888888888888888889999999999999
Q ss_pred HHHHHcCCCC-CcEEecCCCccCHHHHHHHHHHHhCCCCc-EEecCCCCCCCCcccCChHHHHHHcCCCccCC-HHHHHH
Q 013226 336 LIRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEIIDRNAR-IEFRPNTEDDPHKRKPDITKAKQLLGWEPRVT-LRKGLP 412 (447)
Q Consensus 336 i~~~l~~~~~-g~~~i~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s-~~e~l~ 412 (447)
++.+++++.. ++||+++++++++.|+++.+.+.+|.+.. +.+.+..........+|++|++++|||+|+++ ++|+|+
T Consensus 237 ~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~ 316 (348)
T 1oc2_A 237 VWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLE 316 (348)
T ss_dssp HHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCHHHHHH
T ss_pred HHHHhhCCCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccCHHHHHHHcCCCCCCCcHHHHHH
Confidence 9999986654 49999999999999999999999997753 44433333333456789999999999999998 999999
Q ss_pred HHHHHHHHH
Q 013226 413 LMVADFRHR 421 (447)
Q Consensus 413 ~~~~~~~~~ 421 (447)
++++|++++
T Consensus 317 ~~~~~~~~~ 325 (348)
T 1oc2_A 317 ETIQWYTDN 325 (348)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999865
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=336.62 Aligned_cols=298 Identities=26% Similarity=0.420 Sum_probs=244.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----cc--CCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~A 187 (447)
+|+||||||+||||++++++|+++|++|++++|......+.+ . .++.++.+|+.+.. +. ++|+|||+|
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a 75 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI----T-EGAKFYNGDLRDKAFLRDVFTQENIEAVMHFA 75 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGS----C-TTSEEEECCTTCHHHHHHHHHHSCEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhc----C-CCcEEEECCCCCHHHHHHHHhhcCCCEEEECC
Confidence 478999999999999999999999999999998654332221 1 26788899987753 34 799999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAE 266 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E 266 (447)
|.........++...+++|+.++.+++++|++.++ +||++||.++|+.....+++|+ .+..+.+.|+.+|..+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e 150 (330)
T 2c20_A 76 ADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEE-----TMTNPTNTYGETKLAIE 150 (330)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCSSHHHHHHHHHH
T ss_pred cccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcC-----CCCCCCChHHHHHHHHH
Confidence 96543223346778999999999999999999987 9999999999998777788888 45566789999999999
Q ss_pred HHHHHHHhhhCCcEEEEeeccccCCCCcc-------CCCchHHHHHHHHHh-CCCeEEec------CCCeeEccccHHHH
Q 013226 267 TLTMDYHRGLGIEARIARIFNTYGPRMCI-------DDGRVVSNFVAQALR-KEPLTVYG------DGKQTRSFQFVSDL 332 (447)
Q Consensus 267 ~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~i~v~D~ 332 (447)
.+++.++.+++++++++||+++|||+... ....++..++..... +..+.+++ +++..++|+|++|+
T Consensus 151 ~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dv 230 (330)
T 2c20_A 151 KMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDL 230 (330)
T ss_dssp HHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHH
T ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHH
Confidence 99999998889999999999999996321 123455655554443 34577776 66788999999999
Q ss_pred HHHHHHHHcCC----CCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccC-CH
Q 013226 333 VEGLIRLMEGD----HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRV-TL 407 (447)
Q Consensus 333 a~ai~~~l~~~----~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-s~ 407 (447)
|++++.+++++ ..++||+++++++|+.|+++.+.+.+|.+.++...+.....+....+|++|++++|||+|.+ ++
T Consensus 231 a~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l 310 (330)
T 2c20_A 231 VAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVNV 310 (330)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCSCCCH
T ss_pred HHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCCcccccccCHHHHHHHhCCCCccCCH
Confidence 99999998753 24699999999999999999999999988777766655555667789999999999999999 99
Q ss_pred HHHHHHHHHHHHHHh
Q 013226 408 RKGLPLMVADFRHRI 422 (447)
Q Consensus 408 ~e~l~~~~~~~~~~~ 422 (447)
+|+|+++++|++++.
T Consensus 311 ~~~l~~~~~~~~~~~ 325 (330)
T 2c20_A 311 KTIIEHAWNWHQKQP 325 (330)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=341.44 Aligned_cols=304 Identities=28% Similarity=0.433 Sum_probs=251.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEe
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHL 186 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 186 (447)
..++|+||||||+||||++|+++|+++|++|++++|........ ...++.++.+|+.+. .+.++|+|||+
T Consensus 26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~ 100 (379)
T 2c5a_A 26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-----DMFCDEFHLVDLRVMENCLKVTEGVDHVFNL 100 (379)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-----GGTCSEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh-----ccCCceEEECCCCCHHHHHHHhCCCCEEEEC
Confidence 34678999999999999999999999999999999975432211 123678889998765 35689999999
Q ss_pred ccCCCCCCc-ccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCC-----CCCCCCcCCCCCCCCCCChHH
Q 013226 187 ACPASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ-----HPQAETYWGNVNPIGVRSCYD 259 (447)
Q Consensus 187 Ag~~~~~~~-~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~-----~~~~e~~~~~~~~~~~~~~Y~ 259 (447)
||......+ ..++.+.+++|+.++.+++++|++.++ +|||+||.++|+.... .+++|+.+ .+..+.+.|+
T Consensus 101 A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~---~~~~~~~~Y~ 177 (379)
T 2c5a_A 101 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDA---WPAEPQDAFG 177 (379)
T ss_dssp CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGG---SSBCCSSHHH
T ss_pred ceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccC---CCCCCCChhH
Confidence 997543222 456788999999999999999999998 9999999999985332 34566643 1445668999
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC--CchHHHHHHHHHhCCC-eEEecCCCeeEccccHHHHHHHH
Q 013226 260 EGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 260 ~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~ai 336 (447)
.+|..+|.+++.++++.+++++++||+++|||+..... ..++..++..+..+.+ +.+++++++.++|+|++|+|+++
T Consensus 178 ~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai 257 (379)
T 2c5a_A 178 LEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV 257 (379)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHH
Confidence 99999999999998888999999999999999864322 2367788888888876 78888888899999999999999
Q ss_pred HHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHH
Q 013226 337 IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416 (447)
Q Consensus 337 ~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~ 416 (447)
+.+++++..++||+++++.+|+.|+++.+.+.+|.+..+...|... ......+|++|++++|||+|.++++|+|+++++
T Consensus 258 ~~~l~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~-~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~ 336 (379)
T 2c5a_A 258 LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYF 336 (379)
T ss_dssp HHHHHSSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC-CCSBCEECCHHHHHHHSCCCCCCHHHHHHHHHH
T ss_pred HHHhhccCCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCC-CcccccCCHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 9999987778999999999999999999999999887776665432 344567899999999999999999999999999
Q ss_pred HHHHHhcC
Q 013226 417 DFRHRIFG 424 (447)
Q Consensus 417 ~~~~~~~~ 424 (447)
|++++...
T Consensus 337 ~~~~~~~~ 344 (379)
T 2c5a_A 337 WIKEQIEK 344 (379)
T ss_dssp HHHHHHHH
T ss_pred HHHHhHhh
Confidence 99877653
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=346.06 Aligned_cols=317 Identities=25% Similarity=0.389 Sum_probs=245.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHH-hCCCeEEEEecCCCCC--------cccccc---cc-C---CCc---eEEEecccccc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNYFTGK--------KDNLIH---HF-G---NPR---FELIRHDVVEP 175 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~-~~G~~V~~l~r~~~~~--------~~~~~~---~~-~---~~~---v~~~~~D~~~~ 175 (447)
+|+||||||+||||++|+++|+ ++|++|++++|..... .+.+.. .. . ..+ +.++.+|+.+.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 5799999999999999999999 9999999999865432 111110 00 0 123 88899999775
Q ss_pred c-----cc--C-CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCC-------CC
Q 013226 176 I-----LL--E-VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL-------QH 239 (447)
Q Consensus 176 ~-----~~--~-~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~-------~~ 239 (447)
. +. + +|+||||||.........++...+++|+.|+.+++++|++.++ +||++||.++|+... ..
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~ 161 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE 161 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCccccccccc
Confidence 3 33 5 9999999997543223346778999999999999999999987 999999999998765 56
Q ss_pred CCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCcc-------CCCchHHHHH----HHH
Q 013226 240 PQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCI-------DDGRVVSNFV----AQA 308 (447)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~-------~~~~~~~~~~----~~~ 308 (447)
+++|+ .+..+.+.|+.+|+++|.+++.++.+++++++++||+++|||+... ....++..++ ..+
T Consensus 162 ~~~E~-----~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 236 (397)
T 1gy8_A 162 PIDIN-----AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDI 236 (397)
T ss_dssp CBCTT-----SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHH
T ss_pred CcCcc-----CCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHH
Confidence 77887 4556778999999999999999998889999999999999997421 1244555554 244
Q ss_pred HhCC------------CeEEec------CCCeeEccccHHHHHHHHHHHHcCC--C-----C---CcEEecCCCccCHHH
Q 013226 309 LRKE------------PLTVYG------DGKQTRSFQFVSDLVEGLIRLMEGD--H-----V---GPFNLGNPGEFTMLE 360 (447)
Q Consensus 309 ~~~~------------~~~~~~------~~~~~~~~i~v~D~a~ai~~~l~~~--~-----~---g~~~i~~~~~~s~~e 360 (447)
..+. ++.+++ ++++.++|+||+|+|++++.++++. . . ++||+++++++|+.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e 316 (397)
T 1gy8_A 237 APDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVRE 316 (397)
T ss_dssp SCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHH
T ss_pred HhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHHH
Confidence 4443 467776 6778899999999999999998753 2 2 699999999999999
Q ss_pred HHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccC-CHHHHHHHHHHHHHHHhcCCcccCCCCCCCC
Q 013226 361 LAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRV-TLRKGLPLMVADFRHRIFGDQKEAGGGGGGG 436 (447)
Q Consensus 361 l~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-s~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
+++.+.+.+|.+.++...+..........+|++|++++|||+|.+ +++|+|+++++|++++...-..+..+.+||.
T Consensus 317 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (397)
T 1gy8_A 317 VIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNGYASQENGTPGGR 393 (397)
T ss_dssp HHHHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTTTC----------
T ss_pred HHHHHHHHhCCCCCeeeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhcccccCccccCCCCCc
Confidence 999999999988777766655556667789999999999999999 9999999999999887544444455555543
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=333.69 Aligned_cols=305 Identities=22% Similarity=0.302 Sum_probs=243.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc-----cc--CCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI-----LL--EVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~-----~~--~~d~Vih 185 (447)
.+|+||||||+||||++|+++|+++|++|++++|............. ...++.++.+|+.+.. +. ++|+|||
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih 92 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN 92 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 67899999999999999999999999999999997543221111111 2246888999997753 23 4799999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKR 263 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~ 263 (447)
|||.........++...+++|+.|+.+++++|++.++ +||++||.++||.....+++|+ .+..+.+.|+.+|.
T Consensus 93 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~ 167 (335)
T 1rpn_A 93 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKL 167 (335)
T ss_dssp CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHH
T ss_pred CccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcc-----cCCCCCChhHHHHH
Confidence 9996543323456778999999999999999999873 9999999999998777778888 56667789999999
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCCC-eEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
.+|.+++.++.+++++++++||+++|||+..... ...+..++..+..+.. ...+++++..++|+|++|+|++++.+++
T Consensus 168 ~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~ 247 (335)
T 1rpn_A 168 YGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQ 247 (335)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHh
Confidence 9999999999888999999999999999753211 1235556666666753 4456888899999999999999999999
Q ss_pred CCCCCcEEecCCCccCHHHHHHHHHHHhCCCCc--EEecC--CCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHH
Q 013226 342 GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNAR--IEFRP--NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417 (447)
Q Consensus 342 ~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~--~~~~~--~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~ 417 (447)
++..++||+++++++|+.|+++.+.+.+|.+.. +...+ ..........+|++|++++|||+|.++++|+|+++++|
T Consensus 248 ~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~ 327 (335)
T 1rpn_A 248 QDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEA 327 (335)
T ss_dssp SSSCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCCCcCCCHHHHHHHHHHH
Confidence 877789999999999999999999999998642 22222 12233445678999999999999999999999999999
Q ss_pred HHHHhc
Q 013226 418 FRHRIF 423 (447)
Q Consensus 418 ~~~~~~ 423 (447)
++++..
T Consensus 328 ~~~~~~ 333 (335)
T 1rpn_A 328 DLRRVS 333 (335)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 988753
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-42 Score=336.18 Aligned_cols=302 Identities=24% Similarity=0.398 Sum_probs=243.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCC------Cccccccc--cCCCceEEEeccccccc-----cc--C
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG------KKDNLIHH--FGNPRFELIRHDVVEPI-----LL--E 179 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~------~~~~~~~~--~~~~~v~~~~~D~~~~~-----~~--~ 179 (447)
+|+||||||+||||++++++|+++|++|++++|.... ..+..... ....++.++.+|+.+.. +. +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS 81 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcC
Confidence 5789999999999999999999999999999986433 11111100 01246788999997753 33 7
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC-CCh
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSC 257 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~-~~~ 257 (447)
+|+||||||.........++.+.+++|+.|+.+++++|++.++ +||++||.++||.....+++|+ .+..+ .+.
T Consensus 82 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~-----~~~~p~~~~ 156 (348)
T 1ek6_A 82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEA-----HPTGGCTNP 156 (348)
T ss_dssp EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSSH
T ss_pred CCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCC-----CCCCCCCCc
Confidence 9999999996543323346778999999999999999999987 9999999999998777788888 34445 689
Q ss_pred HHHHHHHHHHHHHHHHhh-hCCcEEEEeeccccCCCCc----cC----CCchHHHHHHHHH-hCCCeEEec------CCC
Q 013226 258 YDEGKRTAETLTMDYHRG-LGIEARIARIFNTYGPRMC----ID----DGRVVSNFVAQAL-RKEPLTVYG------DGK 321 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~-~~i~~~ivRp~~i~Gp~~~----~~----~~~~~~~~~~~~~-~~~~~~~~~------~~~ 321 (447)
|+.+|+.+|.+++.++.+ .+++++++||+++|||+.. .. ...++..++.... .+.++.+++ +++
T Consensus 157 Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 236 (348)
T 1ek6_A 157 YGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSS
T ss_pred hHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCc
Confidence 999999999999999876 2399999999999999531 11 2346666666665 566777776 567
Q ss_pred eeEccccHHHHHHHHHHHHcCC--CC--CcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHH
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD--HV--GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQ 397 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~--~~--g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 397 (447)
+.++|+|++|+|++++.+++++ .. ++||+++++++|+.|+++.+.+.+|.+.++...+....+.....+|++|+++
T Consensus 237 ~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~ 316 (348)
T 1ek6_A 237 GVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQE 316 (348)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHH
T ss_pred eEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCCCccchhhccCHHHHHH
Confidence 8899999999999999999764 23 5999999999999999999999999887776666555556667899999999
Q ss_pred HcCCCccCCHHHHHHHHHHHHHHH
Q 013226 398 LLGWEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 398 ~lG~~p~~s~~e~l~~~~~~~~~~ 421 (447)
+|||+|+++++|+|+++++|++++
T Consensus 317 ~lG~~p~~~l~~~l~~~~~w~~~~ 340 (348)
T 1ek6_A 317 ELGWTAALGLDRMCEDLWRWQKQN 340 (348)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHC
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999876
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=333.20 Aligned_cols=303 Identities=25% Similarity=0.438 Sum_probs=243.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCceEEEecccccc------cccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP------ILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~Ag 188 (447)
|+||||||+||||++++++|+++ |++|++++|...... ......++.++.+|+.+. .+.++|+||||||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~ 76 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS----RFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG----GGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHH----HhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEccc
Confidence 58999999999999999999998 899999999643221 112335788999999863 2347999999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCC-CCCC-CCCChHHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGN-VNPI-GVRSCYDEGKRTAE 266 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~-~~~~-~~~~~Y~~sK~~~E 266 (447)
...+..+..++.+.+++|+.++.+++++|++.+.+|||+||.++||.....+++|+.+.. ..+. .+.+.|+.+|..+|
T Consensus 77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e 156 (345)
T 2bll_A 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD 156 (345)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred ccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHHHHHHH
Confidence 755433345677899999999999999999988899999999999987767778875421 1121 34568999999999
Q ss_pred HHHHHHHhhhCCcEEEEeeccccCCCCcc------CCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHH
Q 013226 267 TLTMDYHRGLGIEARIARIFNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLM 340 (447)
Q Consensus 267 ~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l 340 (447)
.+++.++++.+++++++||+++|||+... ....++..++..+..+.++.+++++++.++|+|++|+|++++.++
T Consensus 157 ~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~ 236 (345)
T 2bll_A 157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236 (345)
T ss_dssp HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHH
Confidence 99999988889999999999999998642 123467788888889999888888888999999999999999999
Q ss_pred cCCC----CCcEEecCCC-ccCHHHHHHHHHHHhCCCCcEEecCCC---------------CCCCCcccCChHHHHHHcC
Q 013226 341 EGDH----VGPFNLGNPG-EFTMLELAEVVQEIIDRNARIEFRPNT---------------EDDPHKRKPDITKAKQLLG 400 (447)
Q Consensus 341 ~~~~----~g~~~i~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~~---------------~~~~~~~~~d~~k~~~~lG 400 (447)
+++. .++||+++++ .+|+.|+++.+.+.+|.+......|.. ..+.....+|++|++++||
T Consensus 237 ~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 316 (345)
T 2bll_A 237 ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLD 316 (345)
T ss_dssp HCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBCCHHHHHHHC
T ss_pred hhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccchhhhcccHHHHHHhcC
Confidence 8752 3499999986 899999999999999876432222211 0123456789999999999
Q ss_pred CCccCCHHHHHHHHHHHHHHHh
Q 013226 401 WEPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 401 ~~p~~s~~e~l~~~~~~~~~~~ 422 (447)
|+|.++++|+|+++++|++++.
T Consensus 317 ~~p~~~l~~~l~~~~~~~~~~~ 338 (345)
T 2bll_A 317 WEPKIDMQETIDETLDFFLRTV 338 (345)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHS
T ss_pred CCccccHHHHHHHHHHHHHHcC
Confidence 9999999999999999998764
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=334.31 Aligned_cols=293 Identities=24% Similarity=0.396 Sum_probs=238.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccccc--CCCEEEEeccCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL--EVDQIYHLACPAS 191 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~Ag~~~ 191 (447)
++|+||||||+||||++|+++|+++|++|++++|+. ..++.+.+..+..+. ++|+|||+||...
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~--------------~~D~~d~~~~~~~~~~~~~d~vih~a~~~~ 67 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD--------------ELNLLDSRAVHDFFASERIDQVYLAAAKVG 67 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT--------------TCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc--------------cCCccCHHHHHHHHHhcCCCEEEEcCeecC
Confidence 457899999999999999999999999999987742 112222222333455 8999999999653
Q ss_pred CC-CcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC-ChHHHHHHHHHHH
Q 013226 192 PV-HYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR-SCYDEGKRTAETL 268 (447)
Q Consensus 192 ~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~-~~Y~~sK~~~E~~ 268 (447)
.. ....++.+.+++|+.++.+++++|++.++ +|||+||.++||.....+++|+.+.. .+..|. +.|+.+|..+|.+
T Consensus 68 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK~~~E~~ 146 (321)
T 1e6u_A 68 GIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQ-GTLEPTNEPYAIAKIAGIKL 146 (321)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTS-SCCCGGGHHHHHHHHHHHHH
T ss_pred CcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCcccccc-CCCCCCCCccHHHHHHHHHH
Confidence 21 12346778999999999999999999998 99999999999987777888885422 133343 5899999999999
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccC--CCchHHHHHHHHHh----C-CCeEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCID--DGRVVSNFVAQALR----K-EPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
++.++++.+++++++||+++|||+.... ...++..++..+.. + .++.++++++..++|+|++|+|++++.+++
T Consensus 147 ~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~ 226 (321)
T 1e6u_A 147 CESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVME 226 (321)
T ss_dssp HHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHh
Confidence 9999888899999999999999986432 23567777777654 3 567778888899999999999999999998
Q ss_pred CCC----------CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHH
Q 013226 342 GDH----------VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGL 411 (447)
Q Consensus 342 ~~~----------~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l 411 (447)
++. .++||+++++++|+.|+++.+.+.+|.+..+...+..........+|++|+++ |||+|.++++|+|
T Consensus 227 ~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~l 305 (321)
T 1e6u_A 227 LAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQ-LGWYHEISLEAGL 305 (321)
T ss_dssp SCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHH-TTCCCCCCHHHHH
T ss_pred CcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCCCCCcccccCCHHHHHh-cCCccCCcHHHHH
Confidence 764 36999999999999999999999999887776666544455667899999999 9999999999999
Q ss_pred HHHHHHHHHHh
Q 013226 412 PLMVADFRHRI 422 (447)
Q Consensus 412 ~~~~~~~~~~~ 422 (447)
+++++|++++.
T Consensus 306 ~~~~~~~~~~~ 316 (321)
T 1e6u_A 306 ASTYQWFLENQ 316 (321)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=334.27 Aligned_cols=305 Identities=22% Similarity=0.286 Sum_probs=242.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----cc--CCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih 185 (447)
+++|+||||||+||||++|+++|+++|++|++++|+...............++.++.+|+.+.. +. ++|+|||
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 86 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH 86 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEE
Confidence 4678999999999999999999999999999999975433221111001346888999998753 33 3899999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCCC-CCCCCCcCCCCCCCCCCChHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQ-HPQAETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~~-~~~~e~~~~~~~~~~~~~~Y~~sK 262 (447)
|||.........++...+++|+.|+.+++++|++.+ + +|||+||.++||.... .+++|+ .+..+.+.|+.+|
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~-----~~~~~~~~Y~~sK 161 (357)
T 1rkx_A 87 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYSNSK 161 (357)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHHHHH
T ss_pred CCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCC-----CCCCCCCccHHHH
Confidence 999643222334677899999999999999999876 5 9999999999987543 356666 4556678999999
Q ss_pred HHHHHHHHHHHhhh---------CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHH
Q 013226 263 RTAETLTMDYHRGL---------GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 333 (447)
Q Consensus 263 ~~~E~~~~~~~~~~---------~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 333 (447)
..+|.+++.++.++ +++++++||+++|||+... ...++..++..+..+.++.++ +++..++|+|++|+|
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~-~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~v~v~Dva 239 (357)
T 1rkx_A 162 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA-LDRIVPDILRAFEQSQPVIIR-NPHAIRPWQHVLEPL 239 (357)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC-SSCHHHHHHHHHHTTCCEECS-CTTCEECCEETHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCc-cccHHHHHHHHHhcCCCEEEC-CCCCeeccEeHHHHH
Confidence 99999999998765 9999999999999997532 246788888888888877654 567889999999999
Q ss_pred HHHHHHHcC------CCCCcEEecCC--CccCHHHHHHHHHHHhCCCCcEEecCC-CCCCCCcccCChHHHHHHcCCCcc
Q 013226 334 EGLIRLMEG------DHVGPFNLGNP--GEFTMLELAEVVQEIIDRNARIEFRPN-TEDDPHKRKPDITKAKQLLGWEPR 404 (447)
Q Consensus 334 ~ai~~~l~~------~~~g~~~i~~~--~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~ 404 (447)
++++.++++ ...++||++++ +++|+.|+++.+.+.+|.+..+...+. .........+|++|++++|||+|.
T Consensus 240 ~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 319 (357)
T 1rkx_A 240 SGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPR 319 (357)
T ss_dssp HHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCC
T ss_pred HHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCCHHHHHHHhCCCcC
Confidence 999998874 23469999974 689999999999999998776654332 123345667999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcC
Q 013226 405 VTLRKGLPLMVADFRHRIFG 424 (447)
Q Consensus 405 ~s~~e~l~~~~~~~~~~~~~ 424 (447)
++++|+|+++++|++++...
T Consensus 320 ~~l~e~l~~~~~~~~~~~~~ 339 (357)
T 1rkx_A 320 WNLNTTLEYIVGWHKNWLSG 339 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHhcC
Confidence 99999999999999887643
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=332.53 Aligned_cols=299 Identities=26% Similarity=0.465 Sum_probs=242.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCC-CccccccccCCCceEEEeccccccc-----cc--CCCEEEEe
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTG-KKDNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYHL 186 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~ 186 (447)
|+||||||+||||++|+++|+++ |++|++++|.... ..+.+.......++.++.+|+.+.. +. ++|+||||
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence 57999999999999999999998 7999999986421 2222221112347889999998753 33 79999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC--CC--------eEEEEeCccccCCCCC--C--------CCCCCcC
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV--GA--------RFLLTSTSEVYGDPLQ--H--------PQAETYW 246 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~--g~--------r~v~~SS~~v~g~~~~--~--------~~~e~~~ 246 (447)
||.........++...+++|+.|+.+++++|.+. ++ +||++||.++||.... . +++|+
T Consensus 81 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~-- 158 (361)
T 1kew_A 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET-- 158 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT--
T ss_pred CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC--
Confidence 9975422223456789999999999999999887 63 8999999999986532 1 56666
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
.+..+.+.|+.+|+.+|.+++.++.+++++++++||++||||... ...++..++..+..+.++.+++++...++|
T Consensus 159 ---~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (361)
T 1kew_A 159 ---TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF--PEKLIPLVILNALEGKPLPIYGKGDQIRDW 233 (361)
T ss_dssp ---SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC--TTSHHHHHHHHHHHTCCEEEETTSCCEEEE
T ss_pred ---CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCC--cccHHHHHHHHHHcCCCceEcCCCceeEee
Confidence 456677899999999999999999888999999999999999852 245677788888888888888888889999
Q ss_pred ccHHHHHHHHHHHHcCCCCC-cEEecCCCccCHHHHHHHHHHHhCCCCc--------EEecCCCCCCCCcccCChHHHHH
Q 013226 327 QFVSDLVEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNAR--------IEFRPNTEDDPHKRKPDITKAKQ 397 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~~g-~~~i~~~~~~s~~el~~~i~~~~g~~~~--------~~~~~~~~~~~~~~~~d~~k~~~ 397 (447)
+|++|+|++++.+++++..| +||+++++++++.|+++.+.+.+|.+.+ +.+.+..........+|++|+++
T Consensus 234 i~v~Dva~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~d~~k~~~ 313 (361)
T 1kew_A 234 LYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISR 313 (361)
T ss_dssp EEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHH
T ss_pred EEHHHHHHHHHHHHhCCCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecCCCCcccceeecCHHHHHH
Confidence 99999999999999876554 9999999999999999999999986532 23333333333456789999999
Q ss_pred HcCCCccCCHHHHHHHHHHHHHHH
Q 013226 398 LLGWEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 398 ~lG~~p~~s~~e~l~~~~~~~~~~ 421 (447)
+|||+|.++++|+|+++++|++++
T Consensus 314 ~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 314 ELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp HHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred HhCCCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999999865
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=332.81 Aligned_cols=308 Identities=27% Similarity=0.417 Sum_probs=241.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc-cccccCCCceEEEeccccccc-----ccC--CCEEEEe
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN-LIHHFGNPRFELIRHDVVEPI-----LLE--VDQIYHL 186 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~-~~~~~~~~~v~~~~~D~~~~~-----~~~--~d~Vih~ 186 (447)
+|+||||||+||||++|+++|+++|++|++++|........ ........++.++.+|+.+.. +.+ +|+||||
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 80 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence 36899999999999999999999999999999853221111 111111235788999997753 345 9999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCCCCCCCc--C---------CCCCCCC
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQAETY--W---------GNVNPIG 253 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~~~~e~~--~---------~~~~~~~ 253 (447)
||.........++...+++|+.|+.+++++|++.++ +||++||.++||.....++.|+. | ....+..
T Consensus 81 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~ 160 (347)
T 1orr_A 81 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD 160 (347)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCC
T ss_pred CcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCCC
Confidence 996543222346778999999999999999999875 79999999999875544432221 0 0013455
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC-CCchHHHHHHHHHhCC-----CeEEecCCCeeEccc
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID-DGRVVSNFVAQALRKE-----PLTVYGDGKQTRSFQ 327 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i 327 (447)
+.+.|+.+|+.+|.+++.++.+++++++++||+++|||+.... ...++..++...+.+. ++..++++++.++|+
T Consensus 161 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i 240 (347)
T 1orr_A 161 FHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVL 240 (347)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECE
T ss_pred CCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecCCcceEeeE
Confidence 6789999999999999999988899999999999999976432 2346677777776665 677888889999999
Q ss_pred cHHHHHHHHHHHHcCC--CCC-cEEecCCC--ccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCC
Q 013226 328 FVSDLVEGLIRLMEGD--HVG-PFNLGNPG--EFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWE 402 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~--~~g-~~~i~~~~--~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 402 (447)
|++|+|++++.++++. ..| +||++++. ++|+.|+++.+.+.+|.+..+...|..........+|++|++++|||+
T Consensus 241 ~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 320 (347)
T 1orr_A 241 HAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWS 320 (347)
T ss_dssp EHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHHHHHHHCCC
T ss_pred EHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCCCCCCcceeecCHHHHHHHHCCC
Confidence 9999999999999852 234 99999886 499999999999999988777766654445556778999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHh
Q 013226 403 PRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 403 p~~s~~e~l~~~~~~~~~~~ 422 (447)
|+++++|+|+++++|++.+.
T Consensus 321 p~~~~~e~l~~~~~~~~~~~ 340 (347)
T 1orr_A 321 PKVSAKDGVQKMYDWTSSIL 340 (347)
T ss_dssp CCSCHHHHHHHHHHHHHHC-
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998775
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=327.21 Aligned_cols=301 Identities=26% Similarity=0.421 Sum_probs=237.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc--ccCCCceEEEeccccccc-----cc--CCCEEEEe
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH--HFGNPRFELIRHDVVEPI-----LL--EVDQIYHL 186 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~ 186 (447)
|+||||||+||||++++++|+++|++|++++|......+.... .....++.++.+|+.++. +. ++|+||||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~ 80 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEEC
Confidence 5799999999999999999999999999998753322221111 001235778889988753 22 59999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC-CChHHHHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRT 264 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~-~~~Y~~sK~~ 264 (447)
||.........++.+.+++|+.|+.+++++|++.++ +||++||.++||.....+++|+ .+..+ .+.|+.||++
T Consensus 81 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~~Y~~sK~~ 155 (338)
T 1udb_A 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVES-----FPTGTPQSPYGKSKLM 155 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTT-----SCCCCCSSHHHHHHHH
T ss_pred CccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcc-----cCCCCCCChHHHHHHH
Confidence 996543223345677899999999999999998887 9999999999997766677777 33333 6899999999
Q ss_pred HHHHHHHHHhhh-CCcEEEEeeccccCCCCc------cC--CCchHHHHHHHHH-hCCCeEEec------CCCeeEcccc
Q 013226 265 AETLTMDYHRGL-GIEARIARIFNTYGPRMC------ID--DGRVVSNFVAQAL-RKEPLTVYG------DGKQTRSFQF 328 (447)
Q Consensus 265 ~E~~~~~~~~~~-~i~~~ivRp~~i~Gp~~~------~~--~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~i~ 328 (447)
+|.+++.++.+. +++++++||+++|||... .. ...++..++.... .+..+.+++ ++.+.++|+|
T Consensus 156 ~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 235 (338)
T 1udb_A 156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235 (338)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEE
T ss_pred HHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEE
Confidence 999999998776 899999999999998421 11 2345555555444 345566655 4567899999
Q ss_pred HHHHHHHHHHHHcCC--CC--CcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCcc
Q 013226 329 VSDLVEGLIRLMEGD--HV--GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPR 404 (447)
Q Consensus 329 v~D~a~ai~~~l~~~--~~--g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 404 (447)
++|+|++++.++++. .. ++||+++++++|+.|+++.+.+.+|.+.++...+....+.....+|++|++++|||+|+
T Consensus 236 v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 315 (338)
T 1udb_A 236 VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVT 315 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCCCCCchhhhhcCHHHHHHHcCCCcC
Confidence 999999999998752 23 48999999999999999999999998877766665555566678899999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 013226 405 VTLRKGLPLMVADFRHR 421 (447)
Q Consensus 405 ~s~~e~l~~~~~~~~~~ 421 (447)
++++|+|+++++|++++
T Consensus 316 ~~l~~~l~~~~~w~~~~ 332 (338)
T 1udb_A 316 RTLDEMAQDTWHWQSRH 332 (338)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999999865
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=324.75 Aligned_cols=274 Identities=18% Similarity=0.231 Sum_probs=231.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccccc--CCCEEEEeccCCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL--EVDQIYHLACPASPV 193 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~Ag~~~~~ 193 (447)
|+||||||+||||++++++|+++|++|++++|.. .++.+.+..+..+. ++|+|||+||.....
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------------~D~~d~~~~~~~~~~~~~d~vi~~a~~~~~~ 70 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKL---------------LDITNISQVQQVVQEIRPHIIIHCAAYTKVD 70 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTT---------------SCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecccc---------------cCCCCHHHHHHHHHhcCCCEEEECCcccChH
Confidence 4899999999999999999999999999999821 11122222333444 699999999976544
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 013226 194 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 273 (447)
Q Consensus 194 ~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~ 273 (447)
....++...+++|+.++.+++++|++.++||||+||.++|+.....+++|+ .+..|.+.|+.+|..+|.+++.+.
T Consensus 71 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~~~~~ 145 (287)
T 3sc6_A 71 QAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEF-----HNPAPINIYGASKYAGEQFVKELH 145 (287)
T ss_dssp HHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCCCCSSCBCTT-----SCCCCCSHHHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchhhhcCCCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHHHhC
Confidence 444678889999999999999999999999999999999998888889998 567778999999999999998864
Q ss_pred hhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEecCC
Q 013226 274 RGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNP 353 (447)
Q Consensus 274 ~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~~~ 353 (447)
.+++++||+++|||+. ..++..++.....+.++.++++ +.++|+|++|+|++++.+++++..|+||++++
T Consensus 146 ----~~~~ilR~~~v~G~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~~~~~~i~~~ 215 (287)
T 3sc6_A 146 ----NKYFIVRTSWLYGKYG----NNFVKTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLIHTSLYGTYHVSNT 215 (287)
T ss_dssp ----SSEEEEEECSEECSSS----CCHHHHHHHHHTTCSEEEEECS--CEECCEEHHHHHHHHHHHHTSCCCEEEECCCB
T ss_pred ----CCcEEEeeeeecCCCC----CcHHHHHHHHHHcCCCeEeecC--cccCceEHHHHHHHHHHHHhCCCCCeEEEcCC
Confidence 3789999999999964 4577888888888888887765 78899999999999999999888889999999
Q ss_pred CccCHHHHHHHHHHHhCCCCcEEec-----CCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHH
Q 013226 354 GEFTMLELAEVVQEIIDRNARIEFR-----PNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420 (447)
Q Consensus 354 ~~~s~~el~~~i~~~~g~~~~~~~~-----~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~ 420 (447)
+.+|+.|+++.+.+.+|.+..+... +.....+....+|++|++ +|||+|.++++|+|+++++++++
T Consensus 216 ~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~~~~~l~~~~~~~~~ 286 (287)
T 3sc6_A 216 GSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LNGFLQMPSWEEGLERFFIETKS 286 (287)
T ss_dssp SCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HTTCCCCCBHHHHHHHHHHHTC-
T ss_pred CcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hhCCCCCccHHHHHHHHHHHHhc
Confidence 9999999999999999988776544 333445566789999999 79999999999999999998864
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=326.94 Aligned_cols=318 Identities=25% Similarity=0.316 Sum_probs=239.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc-ccccccc-----CCCceEEEeccccccc-----cc--CCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK-DNLIHHF-----GNPRFELIRHDVVEPI-----LL--EVD 181 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~-~~~~~~~-----~~~~v~~~~~D~~~~~-----~~--~~d 181 (447)
||+||||||+||||++++++|+++|++|++++|+..... +.+.... ...++.++.+|+.+.. +. ++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999654311 1111111 1246888899997753 22 479
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC----eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCCh
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSC 257 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~----r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~ 257 (447)
+||||||.........++...+++|+.|+.+++++|++.++ +||++||.++||.....+++|+ .+..+.+.
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~-----~~~~~~~~ 155 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSP 155 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCSH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCcc-----CCCCCCCh
Confidence 99999997654444456778899999999999999999874 9999999999998766678887 45666789
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCCC-eEEecCCCeeEccccHHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~a 335 (447)
|+.+|+.+|.+++.++.+++++++++|++++|||+..... ..++..++..+..+.. ...++++++.++|+|++|+|++
T Consensus 156 Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a 235 (372)
T 1db3_A 156 YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 235 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHH
Confidence 9999999999999999889999999999999999753211 1234556666666653 4556888899999999999999
Q ss_pred HHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEe-----------------------------cC--CCCCC
Q 013226 336 LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEF-----------------------------RP--NTEDD 384 (447)
Q Consensus 336 i~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~-----------------------------~~--~~~~~ 384 (447)
++.+++++..++||+++++++|+.|+++.+.+.+|.+.++.. .+ .....
T Consensus 236 ~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (372)
T 1db3_A 236 QWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAE 315 (372)
T ss_dssp HHHTTSSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC
T ss_pred HHHHHhcCCCceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccceeeccccccCCCc
Confidence 999998877789999999999999999999999987543221 11 11223
Q ss_pred CCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHhcCCcccCCCCCCCCCCcc
Q 013226 385 PHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIFGDQKEAGGGGGGGDATS 440 (447)
Q Consensus 385 ~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (447)
.....+|++|++++|||+|.++++|+|+++++||+++...... .-..|.|++.
T Consensus 316 ~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ 368 (372)
T 1db3_A 316 VETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSL---LKSHGYDVAI 368 (372)
T ss_dssp -CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred hhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhccch---hhhcCcceEE
Confidence 3345679999999999999999999999999999888654322 2344666653
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=327.13 Aligned_cols=299 Identities=22% Similarity=0.301 Sum_probs=234.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEeccccccccc-----CCCEEEEe
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL-----EVDQIYHL 186 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-----~~d~Vih~ 186 (447)
+++|+||||||+||||++|+++|+++| ++|++++|.............. ...++.+.+..+..+. ++|+|||+
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~Vih~ 122 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHE 122 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccCce-EeeecCcHHHHHHHHhhcccCCCCEEEEC
Confidence 467899999999999999999999999 9999999864432111000011 1223333333333343 59999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAE 266 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E 266 (447)
||.... ...++.+.+++|+.++.+++++|++.+++||++||.++|+.....+++|+ .+..+.+.|+.+|..+|
T Consensus 123 A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E 195 (357)
T 2x6t_A 123 GACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVFGYSKFLFD 195 (357)
T ss_dssp CSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGCSCSSCCCSSG-----GGCCCSSHHHHHHHHHH
T ss_pred CcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcchHHhCCCCCCCcCCc-----CCCCCCChhHHHHHHHH
Confidence 997543 34567889999999999999999988789999999999998766678888 45666789999999999
Q ss_pred HHHHHHHhhhCCcEEEEeeccccCCCCccC--CCchHHHHHHHHHhCCCeEEecCCCe-eEccccHHHHHHHHHHHHcCC
Q 013226 267 TLTMDYHRGLGIEARIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQ-TRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 267 ~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.+++.++.+.+++++++||+++|||+.... ...++..++..+..+.++.+++++.. .++|+|++|+|++++.+++++
T Consensus 196 ~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~ 275 (357)
T 2x6t_A 196 EYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENG 275 (357)
T ss_dssp HHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcC
Confidence 999999888899999999999999985321 13567788888888888888888888 899999999999999999876
Q ss_pred CCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC----CCCCcccCChHHHHHHcCC-CccCCHHHHHHHHHHHH
Q 013226 344 HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE----DDPHKRKPDITKAKQLLGW-EPRVTLRKGLPLMVADF 418 (447)
Q Consensus 344 ~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~~~lG~-~p~~s~~e~l~~~~~~~ 418 (447)
..++||+++++.+|+.|+++.+.+.+|.+ .+.+.+.+. .......+|++|+++ ||| .|.++++|+|+++++|+
T Consensus 276 ~~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~-lG~~~~~~~l~e~l~~~~~~~ 353 (357)
T 2x6t_A 276 VSGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWL 353 (357)
T ss_dssp CCEEEEESCSCCEEHHHHHHHHHHHHTCC-CCEEECCCGGGTTSCCSBCCCCCHHHHH-TTCCCCCCCHHHHHHHHHHHH
T ss_pred CCCeEEecCCCcccHHHHHHHHHHHcCCC-CceecCCCcccccccccccccCHHHHHH-cCCCCCCCCHHHHHHHHHHHH
Confidence 66799999999999999999999999987 444333222 123345679999987 999 78889999999999999
Q ss_pred HHH
Q 013226 419 RHR 421 (447)
Q Consensus 419 ~~~ 421 (447)
+++
T Consensus 354 ~~~ 356 (357)
T 2x6t_A 354 NRD 356 (357)
T ss_dssp C--
T ss_pred hhc
Confidence 754
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=327.30 Aligned_cols=303 Identities=25% Similarity=0.265 Sum_probs=240.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-------CCCceEEEeccccccc-----cc--CCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-------GNPRFELIRHDVVEPI-----LL--EVD 181 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-------~~~~v~~~~~D~~~~~-----~~--~~d 181 (447)
|+||||||+||||++|+++|+++|++|++++|............+ ...++.++.+|+.+.. +. ++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999997543211111111 1246888999998753 22 479
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC----eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCCh
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSC 257 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~----r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~ 257 (447)
+||||||.........++...+++|+.|+.+++++|++.++ +||++||.++|+.....+++|+ .+..+.+.
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~~~~~~ 179 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSP 179 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCCSH
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCcc-----CCCCCCCh
Confidence 99999996543222346778899999999999999999873 9999999999997777788888 45566789
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCCC-eEEecCCCeeEccccHHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~a 335 (447)
|+.+|+.+|.+++.++.+++++++++||+++|||+..... ...+..++..+..+.. ...+++++..++|+|++|+|++
T Consensus 180 Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a 259 (375)
T 1t2a_A 180 YGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEA 259 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHH
Confidence 9999999999999999888999999999999999753211 1224455556666653 4556888899999999999999
Q ss_pred HHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEE-------------------ecC--CCCCCCCcccCChHH
Q 013226 336 LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIE-------------------FRP--NTEDDPHKRKPDITK 394 (447)
Q Consensus 336 i~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~-------------------~~~--~~~~~~~~~~~d~~k 394 (447)
++.+++++..++||+++++++|+.|+++.+.+.+|.+..+. ..+ ..........+|++|
T Consensus 260 ~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 339 (375)
T 1t2a_A 260 MWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTK 339 (375)
T ss_dssp HHHHHHSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCHH
T ss_pred HHHHHhcCCCceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCcccchhhcCCHHH
Confidence 99999987778999999999999999999999999864322 111 112233456789999
Q ss_pred HHHHcCCCccCCHHHHHHHHHHHHHHHhc
Q 013226 395 AKQLLGWEPRVTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 395 ~~~~lG~~p~~s~~e~l~~~~~~~~~~~~ 423 (447)
++++|||+|.++++|+|+++++|+++...
T Consensus 340 ~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 368 (375)
T 1t2a_A 340 AKQKLNWKPRVAFDELVREMVHADVELMR 368 (375)
T ss_dssp HHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999987754
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-40 Score=322.03 Aligned_cols=305 Identities=22% Similarity=0.273 Sum_probs=241.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc-ccccccCCCceEEEeccccccc-----cc--CCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD-NLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~-~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih 185 (447)
++|+||||||+||||++++++|+++|++|++++|+...... .+.......++.++.+|+.+.. +. ++|+|||
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 81 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYN 81 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence 57899999999999999999999999999999997543221 1111112246888999997753 23 4799999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC--CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKR 263 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~ 263 (447)
|||.........++...+++|+.|+.+++++|++.+ .+||++||.++||.....+++|+ .+..+.+.|+.+|+
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~~~~~Y~~sK~ 156 (345)
T 2z1m_A 82 LAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAKL 156 (345)
T ss_dssp CCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHH
T ss_pred CCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCcc-----CCCCCCChhHHHHH
Confidence 999754322245677899999999999999999887 39999999999998777777887 45666789999999
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCCC-eEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
.+|.+++.++.+++++++++|+.++|||+..... ...+..++..+..+.. ...++++...++|+|++|+|++++.+++
T Consensus 157 ~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~ 236 (345)
T 2z1m_A 157 FGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQ 236 (345)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHh
Confidence 9999999999888999999999999999853221 1123344555556643 3356777888999999999999999999
Q ss_pred CCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEE-------------------ecC--CCCCCCCcccCChHHHHHHcC
Q 013226 342 GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIE-------------------FRP--NTEDDPHKRKPDITKAKQLLG 400 (447)
Q Consensus 342 ~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~-------------------~~~--~~~~~~~~~~~d~~k~~~~lG 400 (447)
++..++||+++++.+++.|+++.+.+.+|.+..+. ..+ ..........+|++|++++||
T Consensus 237 ~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 316 (345)
T 2z1m_A 237 QPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLG 316 (345)
T ss_dssp SSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCHHHHHHHC
T ss_pred CCCCceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCcceeecCHHHHHHHcC
Confidence 87778999999999999999999999999864322 111 112233445679999999999
Q ss_pred CCccCCHHHHHHHHHHHHHHHhc
Q 013226 401 WEPRVTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 401 ~~p~~s~~e~l~~~~~~~~~~~~ 423 (447)
|+|.++++|+|+++++|++++..
T Consensus 317 ~~p~~~~~~~l~~~~~~~~~~~~ 339 (345)
T 2z1m_A 317 WKPRTTFDELVEIMMEADLKRVR 339 (345)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988754
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=321.22 Aligned_cols=295 Identities=22% Similarity=0.312 Sum_probs=214.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEeccccccccc-----CCCEEEEeccCC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL-----EVDQIYHLACPA 190 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-----~~d~Vih~Ag~~ 190 (447)
+||||||+||||++|+++|+++| ++|++++|.............. ...++.+.+..+..+. ++|+||||||..
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~~ 79 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS 79 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhhcCcce-eccccccHHHHHHHHhccccCCCcEEEECcccc
Confidence 48999999999999999999999 9999999864432111000111 1233333333334444 499999999975
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHH
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTM 270 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 270 (447)
.. ...++.+.+++|+.++.+++++|++.+++||++||.++||.....+++|+ .+..|.+.|+.+|..+|.+++
T Consensus 80 ~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y~~sK~~~e~~~~ 152 (310)
T 1eq2_A 80 ST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVYGYSKFLFDEYVR 152 (310)
T ss_dssp CT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHHHHHHHHHHHHHH
T ss_pred cC--cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeHHHhCCCCCCCCCCC-----CCCCCCChhHHHHHHHHHHHH
Confidence 43 34567889999999999999999998889999999999998766678887 456677899999999999999
Q ss_pred HHHhhhCCcEEEEeeccccCCCCccC--CCchHHHHHHHHHhCCCeEEecCCCe-eEccccHHHHHHHHHHHHcCCCCCc
Q 013226 271 DYHRGLGIEARIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQ-TRSFQFVSDLVEGLIRLMEGDHVGP 347 (447)
Q Consensus 271 ~~~~~~~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~ai~~~l~~~~~g~ 347 (447)
.++.+.+++++++||+++|||+.... ...++..++..+..++++.++++++. .++|+|++|+|++++.+++++..++
T Consensus 153 ~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~~~~ 232 (310)
T 1eq2_A 153 QILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGI 232 (310)
T ss_dssp HHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcCCCCe
Confidence 99888899999999999999985421 13567888888888888877888888 8999999999999999998766679
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC----CCCCcccCChHHHHHHcCC-CccCCHHHHHHHHHHHHHHH
Q 013226 348 FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE----DDPHKRKPDITKAKQLLGW-EPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 348 ~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~~~lG~-~p~~s~~e~l~~~~~~~~~~ 421 (447)
||+++++++|+.|+++.+.+.+|.+ .+.+.+.+. .......+|++|+++ ||| .|.++++|+|+++++||+++
T Consensus 233 ~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lG~~~~~~~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 233 FNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-AGYDKPFKTVAEGVTEYMAWLNRD 309 (310)
T ss_dssp EEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHH-TTCCCCCCCHHHHHHHHHHHTC--
T ss_pred EEEeCCCccCHHHHHHHHHHHcCCC-CceeCCCChhhhcccccccccchHHHHh-cCCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999876 333333221 122345679999987 999 78889999999999998754
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=321.33 Aligned_cols=290 Identities=18% Similarity=0.276 Sum_probs=230.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEecCCCCCccccccccCCCceEEEecccccc-----ccc--CCCEEEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILL--EVDQIYH 185 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih 185 (447)
+|+||||||+||||++|+++|+++ |++|++++|+.... ... .++.++.+|+.+. .+. ++|+|||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--~~~-----~~~~~~~~D~~d~~~~~~~~~~~~~d~vih 74 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNT--DVV-----NSGPFEVVNALDFNQIEHLVEVHKITDIYL 74 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSC--HHH-----HSSCEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccc--ccc-----CCCceEEecCCCHHHHHHHHhhcCCCEEEE
Confidence 578999999999999999999999 89999999864432 111 1467888888765 234 7999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCC-CCCCCCCcCCCCCCCCCCChHHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL-QHPQAETYWGNVNPIGVRSCYDEGKR 263 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~-~~~~~e~~~~~~~~~~~~~~Y~~sK~ 263 (447)
+||.... ....++.+.+++|+.++.+++++|++.++ +|||+||.++|+... ..+.+|+ .+..+.+.|+.+|.
T Consensus 75 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~~~~~Y~~sK~ 148 (312)
T 2yy7_A 75 MAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQY-----TIMEPSTVYGISKQ 148 (312)
T ss_dssp CCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSS-----CBCCCCSHHHHHHH
T ss_pred CCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCcccc-----CcCCCCchhHHHHH
Confidence 9986432 22346778999999999999999999998 999999999998643 3455666 45667789999999
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCC--chHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
.+|.+++.++.+++++++++||+++|||...+... .++..++...+.++.+..+++++..++|+|++|+|++++.+++
T Consensus 149 ~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 228 (312)
T 2yy7_A 149 AGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMK 228 (312)
T ss_dssp HHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHh
Confidence 99999999988889999999999999986533221 2333444455566667777888889999999999999999998
Q ss_pred CCCC-----CcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC---CCCCcccCChHHHHHHcCCCccCCHHHHHHH
Q 013226 342 GDHV-----GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE---DDPHKRKPDITKAKQLLGWEPRVTLRKGLPL 413 (447)
Q Consensus 342 ~~~~-----g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~ 413 (447)
++.. ++||+++ +.+|+.|+++.+.+.+| ...+.+.|... .......+|++|++++|||+|+++++|+|++
T Consensus 229 ~~~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~ 306 (312)
T 2yy7_A 229 APVEKIKIHSSYNLAA-MSFTPTEIANEIKKHIP-EFTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDLESMTKD 306 (312)
T ss_dssp SCGGGCCCSSCEECCS-EEECHHHHHHHHHTTCT-TCEEEECCCTHHHHHTTSCSSBCCHHHHHHHCCCCCCCHHHHHHH
T ss_pred CcccccccCceEEeCC-CccCHHHHHHHHHHHCC-CCceEeccCccccccccccccCCHHHHHHHcCCCCCCCHHHHHHH
Confidence 7642 6999986 89999999999999988 34444444211 0122356899999999999999999999999
Q ss_pred HHHHHH
Q 013226 414 MVADFR 419 (447)
Q Consensus 414 ~~~~~~ 419 (447)
+++||+
T Consensus 307 ~~~~~k 312 (312)
T 2yy7_A 307 MIEHLS 312 (312)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 999874
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=330.80 Aligned_cols=307 Identities=25% Similarity=0.277 Sum_probs=239.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc----------------cccc--ccCCCceEEEeccccc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD----------------NLIH--HFGNPRFELIRHDVVE 174 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~----------------~~~~--~~~~~~v~~~~~D~~~ 174 (447)
..+++||||||+||||++|+++|+++|++|++++|....... .+.. .....++.++.+|+.+
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 478899999999999999999999999999999885321100 0000 0112467889999987
Q ss_pred cc-----ccC--CCEEEEeccCCCCCCcccChH---HHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCCCCC
Q 013226 175 PI-----LLE--VDQIYHLACPASPVHYKFNPV---KTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQA 242 (447)
Q Consensus 175 ~~-----~~~--~d~Vih~Ag~~~~~~~~~~~~---~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~~~~ 242 (447)
.. +.+ +|+||||||.........++. ..+++|+.|+.+++++|++.++ +||++||.++||... .+++
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~~ 167 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIE 167 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBC
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCCC
Confidence 53 344 999999999754322222333 4789999999999999998873 999999999998754 4677
Q ss_pred CCcCCCC---------CCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC-------------C--C
Q 013226 243 ETYWGNV---------NPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID-------------D--G 298 (447)
Q Consensus 243 e~~~~~~---------~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~-------------~--~ 298 (447)
|+.|... .+..+.+.|+.||+++|.+++.++.+++++++++||++||||+.... . .
T Consensus 168 E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~ 247 (404)
T 1i24_A 168 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247 (404)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTC
T ss_pred ccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchh
Confidence 7644210 24556789999999999999999888899999999999999985321 0 3
Q ss_pred chHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC-CC---cEEecCCCccCHHHHHHHHHHH---hCC
Q 013226 299 RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH-VG---PFNLGNPGEFTMLELAEVVQEI---IDR 371 (447)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~-~g---~~~i~~~~~~s~~el~~~i~~~---~g~ 371 (447)
.++..++..+..++++.+++++.+.++|+||+|+|++++.+++++. .| +||+++ +++|+.|+++.+.+. +|.
T Consensus 248 ~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~-~~~s~~e~~~~i~~~~~~~g~ 326 (404)
T 1i24_A 248 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFT-EQFSVNELASLVTKAGSKLGL 326 (404)
T ss_dssp CHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECS-EEEEHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECC-CCCcHHHHHHHHHHHHHhhCC
Confidence 5788899999999998888998899999999999999999998764 24 999998 899999999999998 777
Q ss_pred CCcEEecCCCCC--CCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHh
Q 013226 372 NARIEFRPNTED--DPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 372 ~~~~~~~~~~~~--~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~ 422 (447)
+..+...|.... ......+|++|++ +|||+|.++++++++++++|++...
T Consensus 327 ~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~~~~~~~~~~ 378 (404)
T 1i24_A 327 DVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFK 378 (404)
T ss_dssp CCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTG
T ss_pred CccccccCcccCccccceEecCHHHHH-HcCCCcCcCHHHHHHHHHHHHHhhh
Confidence 766655554332 2234567999998 6999999999999999999997654
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=316.95 Aligned_cols=287 Identities=23% Similarity=0.377 Sum_probs=229.8
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----cc--CCCE
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQ 182 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~ 182 (447)
...+++|+||||||+||||++|+++|+++|++|++++|......+ ....+ .++.++.+|+.+.. +. ++|+
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~l--~~v~~~~~Dl~d~~~~~~~~~~~~~D~ 91 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKRE-VLPPV--AGLSVIEGSVTDAGLLERAFDSFKPTH 91 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGG-GSCSC--TTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchh-hhhcc--CCceEEEeeCCCHHHHHHHHhhcCCCE
Confidence 356788999999999999999999999999999999996443321 11111 46888999997753 44 8999
Q ss_pred EEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCC--CCCCCcCCCCCCCCCCChHH
Q 013226 183 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQH--PQAETYWGNVNPIGVRSCYD 259 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~--~~~e~~~~~~~~~~~~~~Y~ 259 (447)
||||||..... ...++. +++|+.++.+++++|.+.++ +||++||.++|+..... +++|+. .+.+.|+
T Consensus 92 vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~-------~~~~~Y~ 161 (330)
T 2pzm_A 92 VVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT-------APFTSYG 161 (330)
T ss_dssp EEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC-------CCCSHHH
T ss_pred EEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC-------CCCChHH
Confidence 99999975432 122233 89999999999999999887 99999999999865443 677762 4558999
Q ss_pred HHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHH-HHHH
Q 013226 260 EGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE-GLIR 338 (447)
Q Consensus 260 ~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~-ai~~ 338 (447)
.+|+++|.+++.+ +++++++||+++|||+. ...++..++..+..+. ..++++. .++|+|++|+|+ +++.
T Consensus 162 ~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~---~~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~ 231 (330)
T 2pzm_A 162 ISKTAGEAFLMMS----DVPVVSLRLANVTGPRL---AIGPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLS 231 (330)
T ss_dssp HHHHHHHHHHHTC----SSCEEEEEECEEECTTC---CSSHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCCEEEEeeeeeECcCC---CCCHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHH
Confidence 9999999998775 78999999999999984 3456677777766665 4455666 789999999999 9999
Q ss_pred HHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHH-----HHHcCCCccCCHHHHHHH
Q 013226 339 LMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKA-----KQLLGWEPRVTLRKGLPL 413 (447)
Q Consensus 339 ~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~-----~~~lG~~p~~s~~e~l~~ 413 (447)
+++++..++||+++++++++.|+++.+.+.+|.+ .+.+.|... ......+|++|+ ++ |||+|.++++|+|++
T Consensus 232 ~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~-~~~~~~~d~~k~~~~~l~~-lG~~p~~~~~~~l~~ 308 (330)
T 2pzm_A 232 LQEGRPTGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA-PGADDVPSVVLDPSKTETE-FGWKAKVDFKDTITG 308 (330)
T ss_dssp TSTTCCCEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC-CCTTSCSEECBCCHHHHHH-HCCCCCCCHHHHHHH
T ss_pred HhhcCCCCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc-chhhccCCHHHHhhchHHH-cCCcccCCHHHHHHH
Confidence 9987555599999999999999999999999987 444433332 345567788888 77 999999999999999
Q ss_pred HHHHHHHHh
Q 013226 414 MVADFRHRI 422 (447)
Q Consensus 414 ~~~~~~~~~ 422 (447)
+++|++++.
T Consensus 309 ~~~~~~~~~ 317 (330)
T 2pzm_A 309 QLAWYDKYG 317 (330)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhC
Confidence 999998764
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=319.34 Aligned_cols=302 Identities=23% Similarity=0.303 Sum_probs=238.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc-cccccccC-----CC-ceEEEeccccccc-----cc--CCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK-DNLIHHFG-----NP-RFELIRHDVVEPI-----LL--EVD 181 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~-~~~~~~~~-----~~-~v~~~~~D~~~~~-----~~--~~d 181 (447)
|+||||||+||||++|+++|+++|++|++++|...... ..+..... .. ++.++.+|+.+.. +. ++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 68999999999999999999999999999999754311 11111110 12 6788999997753 23 479
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC------eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA------RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR 255 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~------r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~ 255 (447)
+||||||.........++...+++|+.|+.+++++|++.++ +||++||.++||.... +++|+ .+..+.
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~-----~~~~~~ 182 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSET-----TPFHPR 182 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTT-----SCCCCC
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCC-----CCCCCC
Confidence 99999996543222346778899999999999999987652 9999999999997665 77887 466677
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCCC-eEEecCCCeeEccccHHHHH
Q 013226 256 SCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEP-LTVYGDGKQTRSFQFVSDLV 333 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a 333 (447)
+.|+.+|+.+|.+++.++.+++++++++|++++|||+..... ...+..++..+..+.. ...+++++..++|+|++|+|
T Consensus 183 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva 262 (381)
T 1n7h_A 183 SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYV 262 (381)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHH
Confidence 899999999999999999888999999999999999853211 1223445555666653 34568888899999999999
Q ss_pred HHHHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCc--EEecCC--CCCCCCcccCChHHHHHHcCCCccCCHHH
Q 013226 334 EGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNAR--IEFRPN--TEDDPHKRKPDITKAKQLLGWEPRVTLRK 409 (447)
Q Consensus 334 ~ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~--~~~~~~--~~~~~~~~~~d~~k~~~~lG~~p~~s~~e 409 (447)
++++.+++++..++||+++++.+|+.|+++.+.+.+|.+.. +...+. .........+|++|++++|||+|.++++|
T Consensus 263 ~a~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e 342 (381)
T 1n7h_A 263 EAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEK 342 (381)
T ss_dssp HHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHH
T ss_pred HHHHHHHhCCCCCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHHhcCCcccCCHHH
Confidence 99999999877789999999999999999999999997642 333221 22334456789999999999999889999
Q ss_pred HHHHHHHHHHHHhc
Q 013226 410 GLPLMVADFRHRIF 423 (447)
Q Consensus 410 ~l~~~~~~~~~~~~ 423 (447)
+|+++++||+++..
T Consensus 343 ~l~~~~~~~~~~~~ 356 (381)
T 1n7h_A 343 LVKMMVDEDLELAK 356 (381)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999987653
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=313.28 Aligned_cols=286 Identities=15% Similarity=0.102 Sum_probs=223.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag 188 (447)
.+|+||||||+||||++|+++|+++|++|++++|+.... +.+ ...++.++.+|+.+. .+.++|+|||+||
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~l----~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQI-QRL----AYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCG-GGG----GGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhh-hhh----ccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 446899999999999999999999999999999965432 111 123678889998775 3568999999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCC--CCCCCCcCCCCCCCCC----CChHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ--HPQAETYWGNVNPIGV----RSCYDEG 261 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~--~~~~e~~~~~~~~~~~----~~~Y~~s 261 (447)
... .+..++.+.+++|+.++.+++++|++.++ +|||+||.++|+.... .+ +|+ .+..| .+.|+.+
T Consensus 87 ~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~-----~~~~p~~~~~~~Y~~s 158 (342)
T 2x4g_A 87 YYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEG-----LFYDSLPSGKSSYVLC 158 (342)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTT-----CCCSSCCTTSCHHHHH
T ss_pred cCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCC-----CCCCccccccChHHHH
Confidence 643 23345677899999999999999999997 9999999999986544 33 676 45555 6899999
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 262 KRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 262 K~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
|+.+|.+++.++.+ +++++++||+++|||+.. ... +..++..+..+....+ ++..++|+|++|+|++++.+++
T Consensus 159 K~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~--~~~-~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~ 231 (342)
T 2x4g_A 159 KWALDEQAREQARN-GLPVVIGIPGMVLGELDI--GPT-TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALE 231 (342)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEEEECEEECSCCS--SCS-TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-CCcEEEEeCCceECCCCc--ccc-HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHh
Confidence 99999999999877 999999999999999752 112 4556666777766654 4577899999999999999998
Q ss_pred CCC-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC-----------------------C----CCCcccCChH
Q 013226 342 GDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE-----------------------D----DPHKRKPDIT 393 (447)
Q Consensus 342 ~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~-----------------------~----~~~~~~~d~~ 393 (447)
++. .++||+++++ +|+.|+++.+.+.+|.+..+ ..|... . ......+|++
T Consensus 232 ~~~~g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 309 (342)
T 2x4g_A 232 RGRIGERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGR 309 (342)
T ss_dssp HSCTTCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC----------------CCTTCCCCBCCH
T ss_pred CCCCCceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHhcCcccChH
Confidence 765 4599999988 99999999999999987665 333210 0 1235678999
Q ss_pred HHHHHcCC-CccCCHHHHHHHHHHHHHHHh
Q 013226 394 KAKQLLGW-EPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 394 k~~~~lG~-~p~~s~~e~l~~~~~~~~~~~ 422 (447)
|++++||| +| ++++|+|+++++||+++.
T Consensus 310 k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g 338 (342)
T 2x4g_A 310 KAREELGFFST-TALDDTLLRAIDWFRDNG 338 (342)
T ss_dssp HHHHHHCCCCC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCC-CCHHHHHHHHHHHHHHcC
Confidence 99999999 99 799999999999998763
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=314.13 Aligned_cols=285 Identities=23% Similarity=0.319 Sum_probs=225.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----ccC--CCEE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LLE--VDQI 183 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~~--~d~V 183 (447)
..+++|+||||||+||||++|+++|+++|++|++++|......+.+.. ..++.++.+|+.+.. +.+ +|+|
T Consensus 17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~D~v 93 (333)
T 2q1w_A 17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKD---HPNLTFVEGSIADHALVNQLIGDLQPDAV 93 (333)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCC---CTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhh---cCCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence 456889999999999999999999999999999999975433222211 146888999998753 345 9999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccC----CCCCCCCCCCcCCCCCCCCCC-Ch
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYG----DPLQHPQAETYWGNVNPIGVR-SC 257 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g----~~~~~~~~e~~~~~~~~~~~~-~~ 257 (447)
|||||..... ...++. +++|+.++.+++++|++.++ +||++||.++|+ .... +++|+. .+. +.
T Consensus 94 ih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~-------~p~~~~ 162 (333)
T 2q1w_A 94 VHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR-------NPANSS 162 (333)
T ss_dssp EECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC-------CCTTCH
T ss_pred EECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC-------CCCCCc
Confidence 9999975432 112232 89999999999999999987 999999999998 5444 677762 445 78
Q ss_pred HHHHHHHHHHHHHH-HHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHH
Q 013226 258 YDEGKRTAETLTMD-YHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 258 Y~~sK~~~E~~~~~-~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai 336 (447)
|+.+|+++|.+++. ++ +++++||+++|||+. ...++..++.....+. .+++ +...++|+|++|+|+++
T Consensus 163 Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~---~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ai 231 (333)
T 2q1w_A 163 YAISKSANEDYLEYSGL-----DFVTFRLANVVGPRN---VSGPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARAT 231 (333)
T ss_dssp HHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTC---CSSHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCC---cCcHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHHH
Confidence 99999999999987 54 799999999999982 2456777777777765 3445 56778999999999999
Q ss_pred HHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC----CCCCcccCChHHHHHHcCCCccCCHHHHHH
Q 013226 337 IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE----DDPHKRKPDITKAKQLLGWEPRVTLRKGLP 412 (447)
Q Consensus 337 ~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~ 412 (447)
+.+++++..++||+++++.+++.|+++.+.+.+|.+ .+.+.|... .......+|++|++++ ||+|.++++|+|+
T Consensus 232 ~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~ 309 (333)
T 2q1w_A 232 VRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRELGPDDAPSILLDPSRTIQDF-GKIEFTPLKETVA 309 (333)
T ss_dssp HHHHTTCCCEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEECCTTSCCCCCBCCHHHHHHH-CCCCCCCHHHHHH
T ss_pred HHHHhcCCCCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCCcccccccccccCCHHHHHhc-CCCcCCCHHHHHH
Confidence 999987665699999999999999999999999987 443332211 1124567899999998 9999999999999
Q ss_pred HHHHHHHHHh
Q 013226 413 LMVADFRHRI 422 (447)
Q Consensus 413 ~~~~~~~~~~ 422 (447)
++++||+++.
T Consensus 310 ~~~~~~~~~~ 319 (333)
T 2q1w_A 310 AAVAYFREYG 319 (333)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHC
Confidence 9999998763
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-40 Score=315.04 Aligned_cols=273 Identities=18% Similarity=0.166 Sum_probs=224.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccC--CCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLE--VDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~--~d~Vih~Ag 188 (447)
|+|+||||+||||++++++|+ +|++|++++|... .+.+|+.+. .+.+ +|+|||+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~----------------~~~~D~~d~~~~~~~~~~~~~d~vih~a~ 63 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK----------------EFCGDFSNPKGVAETVRKLRPDVIVNAAA 63 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS----------------SSCCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc----------------cccccCCCHHHHHHHHHhcCCCEEEECcc
Confidence 589999999999999999999 8999999998531 133455443 3444 999999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
.........++.+.+++|+.++.+++++|++.++||||+||.++|+.....+++|+ .+..|.+.|+.+|..+|.+
T Consensus 64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~ 138 (299)
T 1n2s_A 64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVYGKTKLAGEKA 138 (299)
T ss_dssp CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHHHHHHHHHHHH
T ss_pred cCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccEEeCCCCCCCCCC-----CCCCCccHHHHHHHHHHHH
Confidence 75433334567889999999999999999998889999999999998777788888 5666778999999999999
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC-----
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD----- 343 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~----- 343 (447)
++.+. .+++++||+++|||+. ..++..++..+..+.++..+++ ..++|+|++|+|++++.+++++
T Consensus 139 ~~~~~----~~~~ilRp~~v~G~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~~~~~ 208 (299)
T 1n2s_A 139 LQDNC----PKHLIFRTSWVYAGKG----NNFAKTMLRLAKERQTLSVIND--QYGAPTGAELLADCTAHAIRVALNKPE 208 (299)
T ss_dssp HHHHC----SSEEEEEECSEECSSS----CCHHHHHHHHHHHCSEEEEECS--CEECCEEHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHhC----CCeEEEeeeeecCCCc----CcHHHHHHHHHhcCCCEEeecC--cccCCeeHHHHHHHHHHHHHHhccccc
Confidence 98864 3899999999999974 2567778888888887777664 7889999999999999999865
Q ss_pred CCCcEEecCCCccCHHHHHHHHHHHhCCCC------cEEecCC-----CCCCCCcccCChHHHHHHcCCCccCCHHHHHH
Q 013226 344 HVGPFNLGNPGEFTMLELAEVVQEIIDRNA------RIEFRPN-----TEDDPHKRKPDITKAKQLLGWEPRVTLRKGLP 412 (447)
Q Consensus 344 ~~g~~~i~~~~~~s~~el~~~i~~~~g~~~------~~~~~~~-----~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~ 412 (447)
..++||+++++.+|+.|+++.+.+.+|.+. .+...+. ....+....+|++|++++|||+|. +++|+|+
T Consensus 209 ~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~~l~ 287 (299)
T 1n2s_A 209 VAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QWELGVK 287 (299)
T ss_dssp GCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BHHHHHH
T ss_pred cCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcCCCCC-CHHHHHH
Confidence 257999999999999999999999998762 3333322 122345678899999999999999 9999999
Q ss_pred HHHHHHHHH
Q 013226 413 LMVADFRHR 421 (447)
Q Consensus 413 ~~~~~~~~~ 421 (447)
++++||+++
T Consensus 288 ~~~~~~~~~ 296 (299)
T 1n2s_A 288 RMLTEMFTT 296 (299)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHhc
Confidence 999999754
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=311.63 Aligned_cols=275 Identities=17% Similarity=0.219 Sum_probs=223.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccccc--CCCEEEEeccCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL--EVDQIYHLACPAS 191 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~Ag~~~ 191 (447)
..|+||||||+||||++++++|+++|++|++++|.. .++.+.+..+..+. ++|+||||||...
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------------~Dl~d~~~~~~~~~~~~~d~vih~A~~~~ 75 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------LDITNVLAVNKFFNEKKPNVVINCAAHTA 75 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------CCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCcc---------------CCCCCHHHHHHHHHhcCCCEEEECCccCC
Confidence 457899999999999999999999999999999841 11111222223344 7999999999654
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHH
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMD 271 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~ 271 (447)
......++.+.+++|+.|+.+++++|++.+++||++||.++|+.....+++|+ .+..+.+.|+.+|..+|.+++.
T Consensus 76 ~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~~v~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~E~~~~~ 150 (292)
T 1vl0_A 76 VDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAYGKTKLEGENFVKA 150 (292)
T ss_dssp HHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEechHHeECCCCCCCCCCC-----CCCCCccHHHHHHHHHHHHHHh
Confidence 32233567789999999999999999998889999999999998776788888 4566778999999999999988
Q ss_pred HHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEec
Q 013226 272 YHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLG 351 (447)
Q Consensus 272 ~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~ 351 (447)
+. .+++++||+++|||+ ..++..++.....+.++..+++ ..++|+|++|+|++++.+++++..++||++
T Consensus 151 ~~----~~~~~lR~~~v~G~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~~~~~~i~ 219 (292)
T 1vl0_A 151 LN----PKYYIVRTAWLYGDG-----NNFVKTMINLGKTHDELKVVHD--QVGTPTSTVDLARVVLKVIDEKNYGTFHCT 219 (292)
T ss_dssp HC----SSEEEEEECSEESSS-----SCHHHHHHHHHHHCSEEEEESS--CEECCEEHHHHHHHHHHHHHHTCCEEEECC
T ss_pred hC----CCeEEEeeeeeeCCC-----cChHHHHHHHHhcCCcEEeecC--eeeCCccHHHHHHHHHHHHhcCCCcEEEec
Confidence 63 479999999999982 2466777777777777776653 778999999999999999987755799999
Q ss_pred CCCccCHHHHHHHHHHHhCCCCcEEecCCC-----CCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHH
Q 013226 352 NPGEFTMLELAEVVQEIIDRNARIEFRPNT-----EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420 (447)
Q Consensus 352 ~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-----~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~ 420 (447)
+++++|+.|+++.+.+.+|.+..+...+.. ...+....+|++|++++|||+|+ +++|+|+++++||++
T Consensus 220 ~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~~ 292 (292)
T 1vl0_A 220 CKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQM 292 (292)
T ss_dssp CBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHTC
T ss_pred CCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCC-CHHHHHHHHHHHhcC
Confidence 999999999999999999988665544322 22344567899999999999999 999999999999863
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-40 Score=313.94 Aligned_cols=268 Identities=16% Similarity=0.159 Sum_probs=218.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----ccC-CCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LLE-VDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~~-~d~Vih~A 187 (447)
++|+||||| +||||++|+++|+++|++|++++|+.... ..++.++.+|+.+.. +.+ +|+|||+|
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM---------PAGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC---------CTTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc---------ccCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 468899999 59999999999999999999999964431 246778888887653 344 99999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAE 266 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E 266 (447)
|.. ..++...+++|+.++.+++++|++.++ +|||+||.++||.....+++|+ .+..|.+.|+.+|..+|
T Consensus 72 ~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E 141 (286)
T 3gpi_A 72 AAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDED-----TPPIAKDFSGKRMLEAE 141 (286)
T ss_dssp HHH-----HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTT-----SCCCCCSHHHHHHHHHH
T ss_pred CCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCC-----CCCCCCChhhHHHHHHH
Confidence 853 234567788999999999999999887 9999999999998877788888 56777899999999999
Q ss_pred HHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcC---C
Q 013226 267 TLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG---D 343 (447)
Q Consensus 267 ~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~---~ 343 (447)
.+ +.+ ++++++||+++|||+.. .++..+.. .. .+++++..++|+|++|+|++++.++++ .
T Consensus 142 ~~-~~~-----~~~~ilR~~~v~G~~~~--------~~~~~~~~-~~--~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~ 204 (286)
T 3gpi_A 142 AL-LAA-----YSSTILRFSGIYGPGRL--------RMIRQAQT-PE--QWPARNAWTNRIHRDDGAAFIAYLIQQRSHA 204 (286)
T ss_dssp HH-GGG-----SSEEEEEECEEEBTTBC--------HHHHHTTC-GG--GSCSSBCEECEEEHHHHHHHHHHHHHHHTTS
T ss_pred HH-Hhc-----CCeEEEecccccCCCch--------hHHHHHHh-cc--cCCCcCceeEEEEHHHHHHHHHHHHhhhccC
Confidence 98 553 89999999999999752 34444444 22 236777889999999999999999987 2
Q ss_pred -CCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccC-CHHHHHHHHHHHHHHH
Q 013226 344 -HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRV-TLRKGLPLMVADFRHR 421 (447)
Q Consensus 344 -~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-s~~e~l~~~~~~~~~~ 421 (447)
..++||+++++++|+.|+++.+.+.+|.+..+...+ .......+|++|++ +|||+|++ +++|+|+++++|++.+
T Consensus 205 ~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~---~~~~~~~~d~~k~~-~lG~~p~~~~l~e~l~~~~~~~~~~ 280 (286)
T 3gpi_A 205 VPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP---PVQGNKKLSNARLL-ASGYQLIYPDYVSGYGALLAAMREG 280 (286)
T ss_dssp CCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC---CBCSSCEECCHHHH-HTTCCCSSCSHHHHHHHHHHHHTC-
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc---ccCCCeEeeHHHHH-HcCCCCcCCcHHHHHHHHHHHHhcc
Confidence 446999999999999999999999999887665433 44566789999998 89999999 6999999999999766
Q ss_pred h
Q 013226 422 I 422 (447)
Q Consensus 422 ~ 422 (447)
.
T Consensus 281 ~ 281 (286)
T 3gpi_A 281 H 281 (286)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=307.45 Aligned_cols=289 Identities=23% Similarity=0.302 Sum_probs=229.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhC--CCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----cc--CCCEEEEec
Q 013226 117 RILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYHLA 187 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~A 187 (447)
+||||||+||||++++++|+++ |++|++++|+..... ++.++.+|+.+.. +. ++|+|||+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----------~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a 70 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG----------GIKFITLDVSNRDEIDRAVEKYSIDAIFHLA 70 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT----------TCCEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc----------CceEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence 4899999999999999999999 899999998643221 3567888887652 33 799999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCC-CCCCCCCcCCCCCCCCCCChHHHHHHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL-QHPQAETYWGNVNPIGVRSCYDEGKRTA 265 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~-~~~~~e~~~~~~~~~~~~~~Y~~sK~~~ 265 (447)
|.... ....++...+++|+.++.+++++|++.++ +||++||.++|+... ..+.+|+ .+..+.+.|+.+|..+
T Consensus 71 ~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~p~~~Y~~sK~~~ 144 (317)
T 3ajr_A 71 GILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSI-----TITRPRTMFGVTKIAA 144 (317)
T ss_dssp CCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSS-----SCCCCCSHHHHHHHHH
T ss_pred cccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCcccc-----ccCCCCchHHHHHHHH
Confidence 86432 12346778899999999999999999998 999999999998642 3445555 4566779999999999
Q ss_pred HHHHHHHHhhhCCcEEEEeeccccCCCCccCC--CchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 266 ETLTMDYHRGLGIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 266 E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
|.+++.++++++++++++||+++||+...+.. ..++...+...+.++.+..+++++..++|+|++|+|++++.+++++
T Consensus 145 e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~ 224 (317)
T 3ajr_A 145 ELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEAD 224 (317)
T ss_dssp HHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCC
Confidence 99999998888999999999999998653221 1233344455666677777777788899999999999999999876
Q ss_pred C-----CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC---CCCCcccCChHHHHHHcCCCccCCHHHHHHHHH
Q 013226 344 H-----VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE---DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415 (447)
Q Consensus 344 ~-----~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~ 415 (447)
. .++||+++ +.+|+.|+++.+.+.++ ...+.+.+... .......+|++|++++|||+|.++++|+|++++
T Consensus 225 ~~~~~~g~~~~i~~-~~~s~~e~~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~ 302 (317)
T 3ajr_A 225 RDKLVLRNGYNVTA-YTFTPSELYSKIKERIP-EFEIEYKEDFRDKIAATWPESLDSSEASNEWGFSIEYDLDRTIDDMI 302 (317)
T ss_dssp GGGCSSCSCEECCS-EEECHHHHHHHHHTTCC-SCCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_pred ccccccCceEecCC-ccccHHHHHHHHHHHCC-ccccccccccchhhccccccccCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3 26999986 68999999999999987 33444443200 112234679999999999999999999999999
Q ss_pred HHHHHHhc
Q 013226 416 ADFRHRIF 423 (447)
Q Consensus 416 ~~~~~~~~ 423 (447)
+|++++..
T Consensus 303 ~~~~~~~~ 310 (317)
T 3ajr_A 303 DHISEKLG 310 (317)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhhc
Confidence 99988754
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=335.74 Aligned_cols=306 Identities=25% Similarity=0.432 Sum_probs=247.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih 185 (447)
+++|+|+||||+||||++++++|+++ |++|++++|+...... .....++.++.+|+.+.. +.++|+|||
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~----~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih 388 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR----FLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLP 388 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGG----GTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhh----hccCCceEEEECCCCCcHHHHHHhhcCCCEEEE
Confidence 46789999999999999999999998 8999999996543221 122357889999998642 346999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCC-CCC-CCCCChHHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGN-VNP-IGVRSCYDEGKR 263 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~-~~~-~~~~~~Y~~sK~ 263 (447)
|||......+..++.+.+++|+.|+.+++++|++.+.+||++||.++||.....+++|+.+.. ..+ ..+.+.|+.+|.
T Consensus 389 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK~ 468 (660)
T 1z7e_A 389 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQ 468 (660)
T ss_dssp CCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHHHHH
T ss_pred CceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHHHHH
Confidence 999765444445677899999999999999999988899999999999987777788875421 111 134568999999
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCCCcc------CCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHH
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPRMCI------DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~ 337 (447)
.+|.+++.++++.+++++++||+++|||+... ....++..++..+..+.++.+++++++.++|+|++|+|++++
T Consensus 469 ~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~ 548 (660)
T 1z7e_A 469 LLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALY 548 (660)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHH
Confidence 99999999988889999999999999998532 124577888888899999888888888999999999999999
Q ss_pred HHHcCCC----CCcEEecCCC-ccCHHHHHHHHHHHhCCCCcEEecCC---------------CCCCCCcccCChHHHHH
Q 013226 338 RLMEGDH----VGPFNLGNPG-EFTMLELAEVVQEIIDRNARIEFRPN---------------TEDDPHKRKPDITKAKQ 397 (447)
Q Consensus 338 ~~l~~~~----~g~~~i~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~---------------~~~~~~~~~~d~~k~~~ 397 (447)
.+++++. .++||+++++ ++|+.|+++.+.+.+|.+......|. ...+.....+|++|+++
T Consensus 549 ~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~ 628 (660)
T 1z7e_A 549 RIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHR 628 (660)
T ss_dssp HHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCCCCSCCCBCCHHHHH
T ss_pred HHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccccccccchhhcccCHHHHHH
Confidence 9998753 3499999886 89999999999999986532111111 11233456789999999
Q ss_pred HcCCCccCCHHHHHHHHHHHHHHHh
Q 013226 398 LLGWEPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 398 ~lG~~p~~s~~e~l~~~~~~~~~~~ 422 (447)
+|||+|.++++|+|+++++||+++.
T Consensus 629 ~LG~~p~~~l~egl~~~i~~~~~~~ 653 (660)
T 1z7e_A 629 CLDWEPKIDMQETIDETLDFFLRTV 653 (660)
T ss_dssp HHCCCCCCCHHHHHHHHHHHHHTTS
T ss_pred hcCCCccCcHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=307.80 Aligned_cols=280 Identities=19% Similarity=0.229 Sum_probs=202.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----ccc--CCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILL--EVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~--~~d~Vih~A 187 (447)
+|+||||||+||||++++++|+++|++|++++|+... . + ++.+|+.+. .+. ++|+|||||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~---------~--~~~~Dl~d~~~~~~~~~~~~~d~vih~A 68 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR--P---------K--FEQVNLLDSNAVHHIIHDFQPHVIVHCA 68 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------------------CHHHHHHHCCSEEEECC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC--C---------C--eEEecCCCHHHHHHHHHhhCCCEEEECC
Confidence 6899999999999999999999999999999985332 0 1 445555443 343 489999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAET 267 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~ 267 (447)
|.........++.+.+++|+.++.+++++|++.+++|||+||.++|+. ...+++|+ .+..+.+.|+.+|..+|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~~~-~~~~~~E~-----~~~~~~~~Y~~sK~~~e~ 142 (315)
T 2ydy_A 69 AERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDG-TNPPYREE-----DIPAPLNLYGKTKLDGEK 142 (315)
T ss_dssp -------------------CHHHHHHHHHHHHHTCEEEEEEEGGGSCS-SSCSBCTT-----SCCCCCSHHHHHHHHHHH
T ss_pred cccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHHHcCC-CCCCCCCC-----CCCCCcCHHHHHHHHHHH
Confidence 976543334567788999999999999999998889999999999987 56677887 455667899999999999
Q ss_pred HHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHH-hCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---
Q 013226 268 LTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQAL-RKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD--- 343 (447)
Q Consensus 268 ~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~--- 343 (447)
+++.+ +++++++||+.||||..... ..++..++.... .+..+...+ +..++++|++|+|++++.+++++
T Consensus 143 ~~~~~----~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~a~~~~~~~~~~~ 215 (315)
T 2ydy_A 143 AVLEN----NLGAAVLRIPILYGEVEKLE-ESAVTVMFDKVQFSNKSANMDH--WQQRFPTHVKDVATVCRQLAEKRMLD 215 (315)
T ss_dssp HHHHH----CTTCEEEEECSEECSCSSGG-GSTTGGGHHHHHCCSSCEEEEC--SSBBCCEEHHHHHHHHHHHHHHHHTC
T ss_pred HHHHh----CCCeEEEeeeeeeCCCCccc-ccHHHHHHHHHHhcCCCeeecc--CceECcEEHHHHHHHHHHHHHhhccc
Confidence 99875 56789999999999976421 134455565566 666666543 46789999999999999998752
Q ss_pred --CCCcEEecCCCccCHHHHHHHHHHHhCCCCc-EEecCC----CCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHH
Q 013226 344 --HVGPFNLGNPGEFTMLELAEVVQEIIDRNAR-IEFRPN----TEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416 (447)
Q Consensus 344 --~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~----~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~ 416 (447)
..++||+++++++++.|+++.+.+.+|.+.. +...+. ....+....+|++|++++ ||+|.++++|+|+++++
T Consensus 216 ~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l~~~~~ 294 (315)
T 2ydy_A 216 PSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL-GIGQRTPFRIGIKESLW 294 (315)
T ss_dssp TTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT-TCCCCCCHHHHHHHHHG
T ss_pred cCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc-CCCCCCCHHHHHHHHHH
Confidence 3469999999999999999999999998754 433332 122345677899999997 99999999999999999
Q ss_pred HHHHH
Q 013226 417 DFRHR 421 (447)
Q Consensus 417 ~~~~~ 421 (447)
||+++
T Consensus 295 ~~~~~ 299 (315)
T 2ydy_A 295 PFLID 299 (315)
T ss_dssp GGCC-
T ss_pred HHccc
Confidence 98765
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=306.60 Aligned_cols=295 Identities=20% Similarity=0.200 Sum_probs=236.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCC-------CeEEEEecCCCCCccccccccCCCceEEEeccccccc-----c-c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRG-------DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L-L 178 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G-------~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~-~ 178 (447)
.+++|+||||||+||||++|+++|+++| ++|++++|....... ....++.++.+|+.+.. + .
T Consensus 11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~ 85 (342)
T 2hrz_A 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-----GFSGAVDARAADLSAPGEAEKLVEA 85 (342)
T ss_dssp CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-----TCCSEEEEEECCTTSTTHHHHHHHT
T ss_pred CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-----ccCCceeEEEcCCCCHHHHHHHHhc
Confidence 4678899999999999999999999999 899999986433221 12346888999998753 3 4
Q ss_pred CCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-----C-eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 179 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-----A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-----~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
++|+||||||.... ....++...+++|+.|+.+++++|++.+ + +||++||.++|+.....+++|+ .+.
T Consensus 86 ~~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~ 159 (342)
T 2hrz_A 86 RPDVIFHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDE-----FHT 159 (342)
T ss_dssp CCSEEEECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTT-----CCC
T ss_pred CCCEEEECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCC-----CCC
Confidence 79999999996431 1234577889999999999999998876 5 9999999999987655678888 456
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccC-CCCccC-CCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG-PRMCID-DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~G-p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
.+.+.|+.+|.++|.++++++.+.+++.+++|++.+|| |+.... ...++..++...+.+.+..+++++....+++|++
T Consensus 160 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (342)
T 2hrz_A 160 TPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPR 239 (342)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEECHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEehH
Confidence 67789999999999999999888899999999999998 764321 1346777888888888877766666777899999
Q ss_pred HHHHHHHHHHcCC-----CCCcEEecCCCccCHHHHHHHHHHHhCCCC--cEEecCCCC----CCCCcccCChHHHHHHc
Q 013226 331 DLVEGLIRLMEGD-----HVGPFNLGNPGEFTMLELAEVVQEIIDRNA--RIEFRPNTE----DDPHKRKPDITKAKQLL 399 (447)
Q Consensus 331 D~a~ai~~~l~~~-----~~g~~~i~~~~~~s~~el~~~i~~~~g~~~--~~~~~~~~~----~~~~~~~~d~~k~~~~l 399 (447)
|+|++++.+++.+ ..++||++ ++.+|+.|+++.+.+.+|.+. .+...+... .......+|++|+++ |
T Consensus 240 Dva~~~~~~~~~~~~~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-l 317 (342)
T 2hrz_A 240 SAVGFLIHGAMIDVEKVGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAPGFEAKRARE-L 317 (342)
T ss_dssp HHHHHHHHHHHSCHHHHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSCCCBCCHHHHH-T
T ss_pred HHHHHHHHHHhccccccCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccccccChHHHHH-c
Confidence 9999999999875 34699995 578999999999999998764 344433211 011223579999999 9
Q ss_pred CCCccCCHHHHHHHHHHHHH
Q 013226 400 GWEPRVTLRKGLPLMVADFR 419 (447)
Q Consensus 400 G~~p~~s~~e~l~~~~~~~~ 419 (447)
||+|.++++|+|+++++||+
T Consensus 318 G~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 318 GFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp TCCCCSSHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999987
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=334.08 Aligned_cols=306 Identities=23% Similarity=0.344 Sum_probs=231.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc--ccCCCceEEEeccccccc-----cc--CCC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH--HFGNPRFELIRHDVVEPI-----LL--EVD 181 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~-----~~--~~d 181 (447)
..+++|+||||||+||||++|+++|+++|++|++++|........... .....++.++.+|+.+.. +. ++|
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D 86 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKID 86 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence 345788999999999999999999999999999999865432211110 111246788889987752 33 799
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCC----CCCCCCCcCCCCCCCCCCC
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPL----QHPQAETYWGNVNPIGVRS 256 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~----~~~~~e~~~~~~~~~~~~~ 256 (447)
+||||||..........+.+.+++|+.++.+++++|++.++ +||++||.++||... ..+++|+ .+..+.+
T Consensus 87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~-----~~~~p~~ 161 (699)
T 1z45_A 87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTN 161 (699)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCS
T ss_pred EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCcccc-----CCCCCCC
Confidence 99999997543323345677899999999999999999887 999999999998642 2456666 4556678
Q ss_pred hHHHHHHHHHHHHHHHHhh--hCCcEEEEeeccccCCCCcc----C----CCchHHHHHHHHHhC--CCeEEec------
Q 013226 257 CYDEGKRTAETLTMDYHRG--LGIEARIARIFNTYGPRMCI----D----DGRVVSNFVAQALRK--EPLTVYG------ 318 (447)
Q Consensus 257 ~Y~~sK~~~E~~~~~~~~~--~~i~~~ivRp~~i~Gp~~~~----~----~~~~~~~~~~~~~~~--~~~~~~~------ 318 (447)
.|+.+|+++|.+++.++.+ .+++++++||+++|||+... + ...++..+. ....+ .++.+++
T Consensus 162 ~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~ 240 (699)
T 1z45_A 162 PYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMA-QVAVGRREKLYIFGDDYDSR 240 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHH-HHHTTSSSCCCCC------C
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHH-HHHhcCCCceEEeCCcccCC
Confidence 9999999999999998876 69999999999999986321 1 123445443 33332 4566665
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC------C--CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD------H--VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKP 390 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~------~--~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 390 (447)
++.+.++|+||+|+|++++.+++.. . .++||+++++.+|+.|+++.+.+.+|.+.++...+....+.....+
T Consensus 241 ~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 320 (699)
T 1z45_A 241 DGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTA 320 (699)
T ss_dssp CSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCB
T ss_pred CCCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCCCCCccccccC
Confidence 5778899999999999999988631 1 2589999999999999999999999988766554444445556788
Q ss_pred ChHHHHHHcCCCccCCHHHHHHHHHHHHHHHh
Q 013226 391 DITKAKQLLGWEPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 391 d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~ 422 (447)
|++|++++|||+|.++++|+|+++++|++++.
T Consensus 321 d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~ 352 (699)
T 1z45_A 321 KPDRAKRELKWQTELQVEDSCKDLWKWTTENP 352 (699)
T ss_dssp CCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999998764
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=297.95 Aligned_cols=267 Identities=17% Similarity=0.119 Sum_probs=215.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPV 193 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~ 193 (447)
++|+|+|||+ ||||++|+++|+++|++|++++|+..... .+ ...+++++.+|+.+..+.++|+|||+|+.....
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~----~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~ 77 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQME-AI----RASGAEPLLWPGEEPSLDGVTHLLISTAPDSGG 77 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHH-HH----HHTTEEEEESSSSCCCCTTCCEEEECCCCBTTB
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhh-hH----hhCCCeEEEecccccccCCCCEEEECCCccccc
Confidence 4589999998 99999999999999999999999643211 11 124688899998776577899999999865321
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHH--CCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHH
Q 013226 194 HYKFNPVKTIKTNVVGTLNMLGLAKR--VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTM 270 (447)
Q Consensus 194 ~~~~~~~~~~~~Nv~gt~~ll~aa~~--~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 270 (447)
. ..+.++++++++ .++ +|||+||.++||.....+++|+ .+..+.+.|+.+|..+|.+++
T Consensus 78 ----~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK~~~E~~~~ 139 (286)
T 3ius_A 78 ----D---------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDET-----TPLTPTAARGRWRVMAEQQWQ 139 (286)
T ss_dssp ----C---------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTT-----SCCCCCSHHHHHHHHHHHHHH
T ss_pred ----c---------HHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCC-----CCCCCCCHHHHHHHHHHHHHH
Confidence 1 125788999988 566 9999999999998877788888 567777999999999999998
Q ss_pred HHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCC-cEE
Q 013226 271 DYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG-PFN 349 (447)
Q Consensus 271 ~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g-~~~ 349 (447)
.+ .+++++++||+++|||+... +..+..+....++++ .+.++|+|++|+|++++.+++++..| +||
T Consensus 140 ~~---~~~~~~ilRp~~v~G~~~~~---------~~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~~~~~g~~~~ 206 (286)
T 3ius_A 140 AV---PNLPLHVFRLAGIYGPGRGP---------FSKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMARPDPGAVYN 206 (286)
T ss_dssp HS---TTCCEEEEEECEEEBTTBSS---------STTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHHSCCTTCEEE
T ss_pred hh---cCCCEEEEeccceECCCchH---------HHHHhcCCccccCCC-CcccceEEHHHHHHHHHHHHhCCCCCCEEE
Confidence 86 68999999999999997532 223455666666655 57889999999999999999987765 999
Q ss_pred ecCCCccCHHHHHHHHHHHhCCCCcEEec--CCCCCC------CCcccCChHHHHHHcCCCccC-CHHHHHHHHHHH
Q 013226 350 LGNPGEFTMLELAEVVQEIIDRNARIEFR--PNTEDD------PHKRKPDITKAKQLLGWEPRV-TLRKGLPLMVAD 417 (447)
Q Consensus 350 i~~~~~~s~~el~~~i~~~~g~~~~~~~~--~~~~~~------~~~~~~d~~k~~~~lG~~p~~-s~~e~l~~~~~~ 417 (447)
+++++++|+.|+++.+.+.+|.+...... +..... .....+|++|++++|||+|++ +++|+|+++++.
T Consensus 207 i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 207 VCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp ECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSSHHHHHHHHHHT
T ss_pred EeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCCHHHHHHHHHHh
Confidence 99999999999999999999987654322 111111 245678999999999999999 799999999873
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-38 Score=306.47 Aligned_cols=302 Identities=18% Similarity=0.160 Sum_probs=229.5
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEE-ecccccc-----cccCCC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELI-RHDVVEP-----ILLEVD 181 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~-~~D~~~~-----~~~~~d 181 (447)
..+++|+||||||+||||++++++|+++|++|++++|+.... +.+.... ...++.++ .+|+.+. .+.++|
T Consensus 7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d 85 (342)
T 1y1p_A 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKL-ANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAA 85 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred cCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccH-HHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCC
Confidence 456789999999999999999999999999999999853321 1111110 11357777 7888764 345799
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHH-CCC-eEEEEeCccccCCCCC----CCCCCCcCCC-------
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR-VGA-RFLLTSTSEVYGDPLQ----HPQAETYWGN------- 248 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~-~g~-r~v~~SS~~v~g~~~~----~~~~e~~~~~------- 248 (447)
+||||||.... ..++.+.+++|+.|+.+++++|++ .++ +||++||.++|+.... .+++|+.|..
T Consensus 86 ~vih~A~~~~~---~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 162 (342)
T 1y1p_A 86 GVAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAK 162 (342)
T ss_dssp EEEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHH
T ss_pred EEEEeCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhc
Confidence 99999997543 246778999999999999999985 565 9999999999864322 5677876521
Q ss_pred ----CCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCC-chHHHHHHHHHhCCCeEEecCCC
Q 013226 249 ----VNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDG-RVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 249 ----~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
..+..+.+.|+.+|+.+|.+++.+++++ +++++++||+++|||....... ..+..++..+..+.+..+++++
T Consensus 163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (342)
T 1y1p_A 163 TLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALM- 241 (342)
T ss_dssp HSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccccC-
Confidence 1133455789999999999999998775 7899999999999998654322 3778888888888877666654
Q ss_pred eeEccccHHHHHHHHHHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLG 400 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 400 (447)
..++|+|++|+|++++.+++++. .|.+++++++.+|+.|+++.+.+.+|.+ .+.. +..........+|++|++++||
T Consensus 242 ~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~~g~~~s~~e~~~~i~~~~~~~-~~~~-~~~~~~~~~~~~d~~k~~~~lg 319 (342)
T 1y1p_A 242 PPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSK-TFPA-DFPDQGQDLSKFDTAPSLEILK 319 (342)
T ss_dssp CSEEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTS-CCCC-CCCCCCCCCCEECCHHHHHHHH
T ss_pred CcCCEeEHHHHHHHHHHHHcCcccCCceEEEeCCCCCHHHHHHHHHHHCCCc-cCCC-CCCccccccccCChHHHHHHHh
Confidence 66899999999999999998754 4655566778899999999999999865 2211 1111112236679999999888
Q ss_pred C---CccCCHHHHHHHHHHHHH
Q 013226 401 W---EPRVTLRKGLPLMVADFR 419 (447)
Q Consensus 401 ~---~p~~s~~e~l~~~~~~~~ 419 (447)
| .+.++++|+|+++++|++
T Consensus 320 ~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 320 SLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp HTTCCSCCCHHHHHHHHHCCSC
T ss_pred hcccCCcCCHHHHHHHHHHHhh
Confidence 7 456699999999998764
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=303.86 Aligned_cols=300 Identities=19% Similarity=0.211 Sum_probs=208.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc--cccccCCCceEEEecccccc-----cccCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN--LIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~--~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 186 (447)
++|+||||||+||||++|+++|+++|++|+++.|+....... +.......++.++.+|+.+. ++.++|+|||+
T Consensus 8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~ 87 (338)
T 2rh8_A 8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHV 87 (338)
T ss_dssp -CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence 368999999999999999999999999999998864422110 00100123578888998765 35679999999
Q ss_pred ccCCCCCCcccCh-HHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCcc-ccCCCC---CCCCCCCcCCCCCC---CCCC-
Q 013226 187 ACPASPVHYKFNP-VKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSE-VYGDPL---QHPQAETYWGNVNP---IGVR- 255 (447)
Q Consensus 187 Ag~~~~~~~~~~~-~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~-v~g~~~---~~~~~e~~~~~~~~---~~~~- 255 (447)
|+.... ...++ .+.+++|+.|+.+++++|++.+ + ||||+||.+ +|+.+. ..+++|+.|..... ..+.
T Consensus 88 A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~ 165 (338)
T 2rh8_A 88 ATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPT 165 (338)
T ss_dssp SSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCC
T ss_pred CCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCcc
Confidence 986421 11233 3488999999999999999986 6 999999987 454321 13678887643222 2211
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC------CeeEccccH
Q 013226 256 SCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG------KQTRSFQFV 329 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~v 329 (447)
..|+.||..+|.+++++.++++++++++||++||||+........+..+. ..+.+... .++.. ...++|+|+
T Consensus 166 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~i~v 243 (338)
T 2rh8_A 166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAM-SLITGNEF-LINGMKGMQMLSGSVSIAHV 243 (338)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHH-HHHHTCHH-HHHHHHHHHHHHSSEEEEEH
T ss_pred chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCcc-ccccccccccccCcccEEEH
Confidence 26999999999999998887899999999999999986432222222222 22344322 11110 112489999
Q ss_pred HHHHHHHHHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCC-CCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCH
Q 013226 330 SDLVEGLIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDR-NARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTL 407 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~ 407 (447)
+|+|++++.+++++. .|.|++++ +.+|+.|+++.+.+.++. +.+..+.+. .. .....+|++|+ ++|||+|++++
T Consensus 244 ~Dva~a~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l~~~~~~~~~~~~~~~~-~~-~~~~~~d~~k~-~~lG~~p~~~l 319 (338)
T 2rh8_A 244 EDVCRAHIFVAEKESASGRYICCA-ANTSVPELAKFLSKRYPQYKVPTDFGDF-PP-KSKLIISSEKL-VKEGFSFKYGI 319 (338)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECS-EEECHHHHHHHHHHHCTTSCCCCCCTTS-CS-SCSCCCCCHHH-HHHTCCCSCCH
T ss_pred HHHHHHHHHHHcCCCcCCcEEEec-CCCCHHHHHHHHHHhCCCCCCCCCCCCC-Cc-CcceeechHHH-HHhCCCCCCCH
Confidence 999999999998754 46887765 579999999999998752 222111111 11 12367899999 56999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013226 408 RKGLPLMVADFRHR 421 (447)
Q Consensus 408 ~e~l~~~~~~~~~~ 421 (447)
+|+|+++++|+++.
T Consensus 320 ~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 320 EEIYDESVEYFKAK 333 (338)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999765
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=296.08 Aligned_cols=300 Identities=21% Similarity=0.271 Sum_probs=210.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc--ccC--CCceEEEecccccc-----cccCCCEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH--HFG--NPRFELIRHDVVEP-----ILLEVDQIY 184 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~--~~~--~~~v~~~~~D~~~~-----~~~~~d~Vi 184 (447)
++|+||||||+||||++|+++|+++|++|++++|+..... .... .+. ..++.++.+|+.+. ++.++|+||
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 82 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVK-KVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVF 82 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHH-HHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhH-HHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence 5789999999999999999999999999999988643211 1100 011 12578888998775 356799999
Q ss_pred EeccCCCCCCcccCh-HHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCcc-ccCCCC-CCCCCCCcCCCCCC---C-CCC
Q 013226 185 HLACPASPVHYKFNP-VKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSE-VYGDPL-QHPQAETYWGNVNP---I-GVR 255 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~-~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~-v~g~~~-~~~~~e~~~~~~~~---~-~~~ 255 (447)
|+|+... ....++ .+.+++|+.|+.+++++|++.+ + ||||+||.+ +|+... ..+++|+.|.+... . .+.
T Consensus 83 h~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~ 160 (337)
T 2c29_D 83 HVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTA 160 (337)
T ss_dssp ECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred EeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCcc
Confidence 9998642 122233 3588999999999999999887 6 999999988 555432 23466765432111 1 134
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHH
Q 013226 256 SCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a 335 (447)
+.|+.||..+|.+++++.++++++++++||+++|||+........+...+ ..+.+... .++... ...|+|++|+|++
T Consensus 161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~-~~~~g~~~-~~~~~~-~~~~i~v~Dva~a 237 (337)
T 2c29_D 161 WMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITAL-SPITGNEA-HYSIIR-QGQFVHLDDLCNA 237 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHT-HHHHTCGG-GHHHHT-EEEEEEHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCCc-cccccC-CCCEEEHHHHHHH
Confidence 57999999999999998877899999999999999985432111111111 11333322 122211 2359999999999
Q ss_pred HHHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCC-CCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHH
Q 013226 336 LIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDR-NARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPL 413 (447)
Q Consensus 336 i~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~ 413 (447)
++.+++++. .+.|+++ ++.+|+.|+++.+.+.++. +.+..+.+. ........+|++|+ ++|||+|+++++|+|++
T Consensus 238 ~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~d~~k~-~~lG~~p~~~l~e~l~~ 314 (337)
T 2c29_D 238 HIYLFENPKAEGRYICS-SHDCIILDLAKMLREKYPEYNIPTEFKGV-DENLKSVCFSSKKL-TDLGFEFKYSLEDMFTG 314 (337)
T ss_dssp HHHHHHCTTCCEEEEEC-CEEEEHHHHHHHHHHHCTTSCCCSCCTTC-CTTCCCCEECCHHH-HHHTCCCCCCHHHHHHH
T ss_pred HHHHhcCcccCceEEEe-CCCCCHHHHHHHHHHHCCCccCCCCCCcc-cCCCccccccHHHH-HHcCCCcCCCHHHHHHH
Confidence 999998754 4577665 4679999999999998742 222111111 12334566899999 67999999999999999
Q ss_pred HHHHHHHHh
Q 013226 414 MVADFRHRI 422 (447)
Q Consensus 414 ~~~~~~~~~ 422 (447)
+++|+++..
T Consensus 315 ~~~~~~~~~ 323 (337)
T 2c29_D 315 AVDTCRAKG 323 (337)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999998753
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=294.10 Aligned_cols=297 Identities=19% Similarity=0.225 Sum_probs=206.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEec-CCCCC--ccccccccC--CCceEEEecccccc-----cccCCCEEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDN-YFTGK--KDNLIHHFG--NPRFELIRHDVVEP-----ILLEVDQIY 184 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r-~~~~~--~~~~~~~~~--~~~v~~~~~D~~~~-----~~~~~d~Vi 184 (447)
+|+||||||+||||++++++|+++|++|++++| +.... ...+. .+. ..++.++.+|+.+. ++.++|+||
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 79 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLT-NLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF 79 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHH-TSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHH-hhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence 578999999999999999999999999999988 43211 11111 011 12577888888765 346799999
Q ss_pred EeccCCCCCCcccC-hHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEeCccc-cCCCC-CCCCCCCcCCCCC---CCCCCC
Q 013226 185 HLACPASPVHYKFN-PVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEV-YGDPL-QHPQAETYWGNVN---PIGVRS 256 (447)
Q Consensus 185 h~Ag~~~~~~~~~~-~~~~~~~Nv~gt~~ll~aa~~~-g~-r~v~~SS~~v-~g~~~-~~~~~e~~~~~~~---~~~~~~ 256 (447)
|+|+... ....+ ..+.+++|+.|+.+++++|++. ++ +||++||.++ |+.+. ..+++|+.|.+.. +..+..
T Consensus 80 h~A~~~~--~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~ 157 (322)
T 2p4h_X 80 HTASPID--FAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFG 157 (322)
T ss_dssp ECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred EcCCccc--CCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCccc
Confidence 9997531 11222 2458999999999999999988 66 9999999884 44322 2356666542211 112223
Q ss_pred -hHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHH
Q 013226 257 -CYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 257 -~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a 335 (447)
.|+.||..+|.+++++.++++++++++||+++|||.........+..+ ...+.+.... ++. ...+|+|++|+|++
T Consensus 158 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~-~~~~~g~~~~-~~~--~~~~~i~v~Dva~a 233 (322)
T 2p4h_X 158 WNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKA-LVLVLGKKEQ-IGV--TRFHMVHVDDVARA 233 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHH-THHHHSCGGG-CCE--EEEEEEEHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHH-HHHHhCCCcc-CcC--CCcCEEEHHHHHHH
Confidence 699999999999999888789999999999999997532212222222 1233444332 222 23489999999999
Q ss_pred HHHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEec--CCCCCCCCcccCChHHHHHHcCCCccCCHHHHHH
Q 013226 336 LIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFR--PNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLP 412 (447)
Q Consensus 336 i~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~--~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~ 412 (447)
++.+++++. .|.|| ++++.+|+.|+++.+.+.++. ..+... ...........+|++|+ ++|||+|+++++|+|+
T Consensus 234 ~~~~~~~~~~~g~~~-~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~k~-~~lG~~p~~~~~~~l~ 310 (322)
T 2p4h_X 234 HIYLLENSVPGGRYN-CSPFIVPIEEMSQLLSAKYPE-YQILTVDELKEIKGARLPDLNTKKL-VDAGFDFKYTIEDMFD 310 (322)
T ss_dssp HHHHHHSCCCCEEEE-CCCEEEEHHHHHHHHHHHCTT-SCCCCTTTTTTCCCEECCEECCHHH-HHTTCCCCCCHHHHHH
T ss_pred HHHHhhCcCCCCCEE-EcCCCCCHHHHHHHHHHhCCC-CCCCCCccccCCCCCcceecccHHH-HHhCCccCCCHHHHHH
Confidence 999998654 46788 667889999999999987742 111111 00001113456899999 5599999999999999
Q ss_pred HHHHHHHHH
Q 013226 413 LMVADFRHR 421 (447)
Q Consensus 413 ~~~~~~~~~ 421 (447)
++++|++++
T Consensus 311 ~~~~~~~~~ 319 (322)
T 2p4h_X 311 DAIQCCKEK 319 (322)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999865
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=291.82 Aligned_cols=286 Identities=15% Similarity=0.075 Sum_probs=222.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-----CeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccC---CC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRG-----DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLE---VD 181 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G-----~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~---~d 181 (447)
+|+||||||+||||++|+++|+++| ++|++++|...... ....+++++.+|+.+. .+.+ +|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d 74 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------HEDNPINYVQCDISDPDDSQAKLSPLTDVT 74 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------CCSSCCEEEECCTTSHHHHHHHHTTCTTCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------cccCceEEEEeecCCHHHHHHHHhcCCCCC
Confidence 4789999999999999999999999 99999999754332 1234688899998775 3455 99
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC--CC-eEE-------EEeCccccCCC--CCCCCCCCcCCCC
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV--GA-RFL-------LTSTSEVYGDP--LQHPQAETYWGNV 249 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~--g~-r~v-------~~SS~~v~g~~--~~~~~~e~~~~~~ 249 (447)
+|||+||... .++.+.+++|+.++.+++++|++. ++ +|| |+||.++||.. ...+++|+.+
T Consensus 75 ~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~--- 146 (364)
T 2v6g_A 75 HVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLP--- 146 (364)
T ss_dssp EEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSC---
T ss_pred EEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCcccc---
Confidence 9999998642 357789999999999999999998 66 887 79999999874 3456777742
Q ss_pred CCCCC-CChHHHHHHHHHHHHHHHHhhhC-CcEEEEeeccccCCCCccCCCchHHHHHHHHH---hCCCeEEecCCC---
Q 013226 250 NPIGV-RSCYDEGKRTAETLTMDYHRGLG-IEARIARIFNTYGPRMCIDDGRVVSNFVAQAL---RKEPLTVYGDGK--- 321 (447)
Q Consensus 250 ~~~~~-~~~Y~~sK~~~E~~~~~~~~~~~-i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--- 321 (447)
..+ .+.| ..+|.++++++++.+ ++++++||+++|||+.......++..++...+ .+.++.++++++
T Consensus 147 --~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 220 (364)
T 2v6g_A 147 --RLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWD 220 (364)
T ss_dssp --CCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHH
T ss_pred --CCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCccccc
Confidence 222 4677 458999998887777 99999999999999865322334444333333 577777677763
Q ss_pred eeEccccHHHHHHHHHHHHcCCC-CC-cEEecCCCccCHHHHHHHHHHHhCCCCcEE--ecCCC----------------
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH-VG-PFNLGNPGEFTMLELAEVVQEIIDRNARIE--FRPNT---------------- 381 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~-~g-~~~i~~~~~~s~~el~~~i~~~~g~~~~~~--~~~~~---------------- 381 (447)
...+++|++|+|++++.+++++. .| +||+++++++|+.|+++.+.+.+|.+.... ..|..
T Consensus 221 ~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 300 (364)
T 2v6g_A 221 GYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVWEEIV 300 (364)
T ss_dssp SCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHHHHHHH
Confidence 44788899999999999998764 34 999999999999999999999999765432 22211
Q ss_pred ------CC---CC-----------Cc-ccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHH
Q 013226 382 ------ED---DP-----------HK-RKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 382 ------~~---~~-----------~~-~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~ 421 (447)
.. .. .. ..+|++|+++ |||+|.++++|+|+++++|++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~ 360 (364)
T 2v6g_A 301 RENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAY 360 (364)
T ss_dssp HHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHc
Confidence 00 00 23 4789999988 99999889999999999999865
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=283.08 Aligned_cols=273 Identities=19% Similarity=0.187 Sum_probs=210.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCC--
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPV-- 193 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~-- 193 (447)
|+|||||||||||++|+++|+++||+|+++.|++... . +...++....+.++|.|||+|+.....
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~-----------~--~~~~~~~~~~l~~~d~vihla~~~i~~~~ 67 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG-----------R--ITWDELAASGLPSCDAAVNLAGENILNPL 67 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT-----------E--EEHHHHHHHCCCSCSEEEECCCCCSSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC-----------e--eecchhhHhhccCCCEEEEeccCcccchh
Confidence 7899999999999999999999999999999853211 1 111223334567899999999853211
Q ss_pred -Ccc-cChHHHHHHHHHHHHHHHHHHHHCCC---eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 194 -HYK-FNPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 194 -~~~-~~~~~~~~~Nv~gt~~ll~aa~~~g~---r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
.+. .....+++.|+.+|.+|++++++.+. +||++||.++||.....+.+|+ .|..+.+.|+..|...|..
T Consensus 68 ~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~-----~p~~~~~~~~~~~~~~e~~ 142 (298)
T 4b4o_A 68 RRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDED-----SPGGDFDFFSNLVTKWEAA 142 (298)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTT-----CCCSCSSHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCccccc-----CCccccchhHHHHHHHHHH
Confidence 121 22456889999999999999998874 5899999999999888888888 6777778888888877764
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC-CCc
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH-VGP 347 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~-~g~ 347 (447)
. .....+++++++||+.||||+. ..+..++.....+. ...++++++.++|||++|+|++++.+++++. .|+
T Consensus 143 ~--~~~~~~~~~~~~r~~~v~g~~~-----~~~~~~~~~~~~~~-~~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~~g~ 214 (298)
T 4b4o_A 143 A--RLPGDSTRQVVVRSGVVLGRGG-----GAMGHMLLPFRLGL-GGPIGSGHQFFPWIHIGDLAGILTHALEANHVHGV 214 (298)
T ss_dssp H--CCSSSSSEEEEEEECEEECTTS-----HHHHHHHHHHHTTC-CCCBTTSCSBCCEEEHHHHHHHHHHHHHCTTCCEE
T ss_pred H--HhhccCCceeeeeeeeEEcCCC-----CchhHHHHHHhcCC-cceecccCceeecCcHHHHHHHHHHHHhCCCCCCe
Confidence 3 2345689999999999999973 34555555555544 3446889999999999999999999998865 579
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCC-----------CCCcccCChHHHHHHcCCCccC-CHHHHHHHHH
Q 013226 348 FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED-----------DPHKRKPDITKAKQLLGWEPRV-TLRKGLPLMV 415 (447)
Q Consensus 348 ~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~-----------~~~~~~~d~~k~~~~lG~~p~~-s~~e~l~~~~ 415 (447)
||+++++++|+.|+++.+.+.+|++..+. .|.... ...+..+++.|+++ +||+++| +++|+|++++
T Consensus 215 yn~~~~~~~t~~e~~~~ia~~lgrp~~~p-vP~~~~~~~~g~~~~~~~l~~~rv~~~kl~~-~Gf~f~yp~l~~al~~l~ 292 (298)
T 4b4o_A 215 LNGVAPSSATNAEFAQTFGAALGRRAFIP-LPSAVVQAVFGRQRAIMLLEGQKVIPRRTLA-TGYQYSFPELGAALKEIA 292 (298)
T ss_dssp EEESCSCCCBHHHHHHHHHHHHTCCCCCC-BCHHHHHHHHCHHHHHHHHCCCCBCCHHHHH-TTCCCSCCSHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHHhCcCCccc-CCHHHHHHHhcchhHHHhhCCCEEcHHHHHH-CCCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999875432 222100 01234567889875 8999999 6999999988
Q ss_pred H
Q 013226 416 A 416 (447)
Q Consensus 416 ~ 416 (447)
+
T Consensus 293 ~ 293 (298)
T 4b4o_A 293 E 293 (298)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=277.63 Aligned_cols=260 Identities=17% Similarity=0.169 Sum_probs=208.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----cc--CCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LL--EVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~Ag 188 (447)
|+|+||||+||||++++++|++ |++|++++|+.... .+ +.+|+.+.. +. ++|+||||||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~----------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a~ 66 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ----------GG---YKLDLTDFPRLEDFIIKKRPDVIINAAA 66 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT----------TC---EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC----------CC---ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence 5799999999999999999995 89999999965311 11 677876652 33 3999999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
.........++...+++|+.++.+++++|++.+++||++||.++|+... .+++|+ .+..+.+.|+.+|+.+|.+
T Consensus 67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~~~~~~~-~~~~e~-----~~~~~~~~Y~~sK~~~e~~ 140 (273)
T 2ggs_A 67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEK-GNYKEE-----DIPNPINYYGLSKLLGETF 140 (273)
T ss_dssp CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGSCSSS-CSBCTT-----SCCCCSSHHHHHHHHHHHH
T ss_pred ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecceeEcCCC-CCcCCC-----CCCCCCCHHHHHHHHHHHH
Confidence 7543323356778999999999999999999888999999999997543 367777 4556678999999999998
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCCcE
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPF 348 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~ 348 (447)
++. ++++++||+.+||+ ..+...++.....+..+..+++ .++++|++|+|++++.+++++..|+|
T Consensus 141 ~~~------~~~~~iR~~~v~G~------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~~~~g~~ 205 (273)
T 2ggs_A 141 ALQ------DDSLIIRTSGIFRN------KGFPIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLELRKTGII 205 (273)
T ss_dssp HCC------TTCEEEEECCCBSS------SSHHHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHHTCCEEE
T ss_pred HhC------CCeEEEeccccccc------cHHHHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhcCcCCeE
Confidence 866 57899999999983 3455666666677777776654 78999999999999999988777899
Q ss_pred EecCCCccCHHHHHHHHHHHhCCCCcEEecC----CCCCCCCcccCChHHHHHHcCCCc-cCCHHHHH
Q 013226 349 NLGNPGEFTMLELAEVVQEIIDRNARIEFRP----NTEDDPHKRKPDITKAKQLLGWEP-RVTLRKGL 411 (447)
Q Consensus 349 ~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~----~~~~~~~~~~~d~~k~~~~lG~~p-~~s~~e~l 411 (447)
|+++ +.+|+.|+++.+.+.+|.+..+...+ .....+....+|++|++++|||+| .++++|++
T Consensus 206 ~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 206 HVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp ECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred EECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence 9999 99999999999999999887654321 112234567889999999999999 67898865
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=296.42 Aligned_cols=276 Identities=18% Similarity=0.174 Sum_probs=204.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecc---cccccccCCCEEEEeccCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHD---VVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D---~~~~~~~~~d~Vih~Ag~~~ 191 (447)
+|+||||||+||||++|++.|+++|++|++++|+...... +..| .....+.++|+||||||...
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~-------------v~~d~~~~~~~~l~~~D~Vih~A~~~~ 213 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGK-------------RFWDPLNPASDLLDGADVLVHLAGEPI 213 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTC-------------EECCTTSCCTTTTTTCSEEEECCCC--
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccc-------------eeecccchhHHhcCCCCEEEECCCCcc
Confidence 7899999999999999999999999999999997543211 2223 33446678999999999754
Q ss_pred CCCc-ccChHHHHHHHHHHHHHHHHH-HHHCCC-eEEEEeCccccC-CCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHH
Q 013226 192 PVHY-KFNPVKTIKTNVVGTLNMLGL-AKRVGA-RFLLTSTSEVYG-DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAET 267 (447)
Q Consensus 192 ~~~~-~~~~~~~~~~Nv~gt~~ll~a-a~~~g~-r~v~~SS~~v~g-~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~ 267 (447)
...+ ......++++|+.|+.+|+++ +++.++ +|||+||.++|| .....+++|+. +. +.+.|+.+|...|.
T Consensus 214 ~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~-----~~-~~~~y~~~~~~~E~ 287 (516)
T 3oh8_A 214 FGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEES-----ES-GDDFLAEVCRDWEH 287 (516)
T ss_dssp ---CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTS-----CC-CSSHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCC-----CC-CcChHHHHHHHHHH
Confidence 3332 334667899999999999999 566676 999999999998 55555677773 33 56889999999998
Q ss_pred HHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC-CC
Q 013226 268 LTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH-VG 346 (447)
Q Consensus 268 ~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~-~g 346 (447)
++.. ....|++++++||+++|||+. .++..++..+..+.. ..++++++.++|+|++|+|++++.+++++. .|
T Consensus 288 ~~~~-~~~~gi~~~ilRp~~v~Gp~~-----~~~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~g 360 (516)
T 3oh8_A 288 ATAP-ASDAGKRVAFIRTGVALSGRG-----GMLPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIVDAQISG 360 (516)
T ss_dssp TTHH-HHHTTCEEEEEEECEEEBTTB-----SHHHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHHCTTCCE
T ss_pred HHHH-HHhCCCCEEEEEeeEEECCCC-----ChHHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHhCcccCC
Confidence 7654 455799999999999999973 355555544444433 356788899999999999999999998764 57
Q ss_pred cEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC-----CCC-------CcccCChHHHHHHcCCCccCC-HHHHHHH
Q 013226 347 PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE-----DDP-------HKRKPDITKAKQLLGWEPRVT-LRKGLPL 413 (447)
Q Consensus 347 ~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~-----~~~-------~~~~~d~~k~~~~lG~~p~~s-~~e~l~~ 413 (447)
.||+++++++|+.|+++.+.+.+|.+..+. .|... ... ....++++|++. |||+|+++ ++++|++
T Consensus 361 ~~ni~~~~~~s~~el~~~i~~~~g~~~~~~-~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~~-lG~~~~~~~l~e~l~~ 438 (516)
T 3oh8_A 361 PINAVAPNPVSNADMTKILATSMHRPAFIQ-IPSLGPKILLGSQGAEELALASQRTAPAALEN-LSHTFRYTDIGAAIAH 438 (516)
T ss_dssp EEEESCSCCEEHHHHHHHTTC----------------------CCGGGGGGCEEEECCHHHHH-TTCCCSCSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCHHHHHHHhCCchhHHHhhcCCeechHHHHH-CCCCCCCCCHHHHHHH
Confidence 999999999999999999999999765322 22211 111 234568899984 89999997 9999999
Q ss_pred HHHHH
Q 013226 414 MVADF 418 (447)
Q Consensus 414 ~~~~~ 418 (447)
+++..
T Consensus 439 ~l~~~ 443 (516)
T 3oh8_A 439 ELGYE 443 (516)
T ss_dssp HHTCC
T ss_pred HhCcc
Confidence 98754
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=274.38 Aligned_cols=300 Identities=18% Similarity=0.153 Sum_probs=218.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc--ccccc-----------ccCCCceEEEecccccc---
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK--DNLIH-----------HFGNPRFELIRHDVVEP--- 175 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~--~~~~~-----------~~~~~~v~~~~~D~~~~--- 175 (447)
...+|+||||||+||||++|+++|+++|++|++++|...... ..+.. .....++.++.+|+.+.
T Consensus 66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 145 (427)
T 4f6c_A 66 HRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 145 (427)
T ss_dssp CCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence 346789999999999999999999999999999999754110 00000 00124788899998874
Q ss_pred -cccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCC-----CCCCCCCCCcCCCC
Q 013226 176 -ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD-----PLQHPQAETYWGNV 249 (447)
Q Consensus 176 -~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~-----~~~~~~~e~~~~~~ 249 (447)
.+.++|+||||||... ...++...+++|+.|+.+++++|++.+.+|||+||.++ |. ....+++|+.+..
T Consensus 146 ~~~~~~d~Vih~A~~~~---~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~- 220 (427)
T 4f6c_A 146 VLPENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVYK- 220 (427)
T ss_dssp CCSSCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-GSEECSSCSCCEECTTCSCS-
T ss_pred CCcCCCCEEEECCcccC---CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-CCCccCCCCCcccccccccc-
Confidence 2457999999999653 23456778999999999999999993349999999998 54 2345667775421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC-----CCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID-----DGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+..+.+.|+.+|+.+|.+++++++ .|++++++|||+||||..... ...++..++........++. ++++..+
T Consensus 221 -~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 297 (427)
T 4f6c_A 221 -GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPV 297 (427)
T ss_dssp -SCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH-HHHTCEE
T ss_pred -CCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC-ccccceE
Confidence 233678999999999999999764 699999999999999986432 12457788888888777664 3456889
Q ss_pred ccccHHHHHHHHHHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCC------C------------CCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT------E------------DDP 385 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~------~------------~~~ 385 (447)
+|++++|+|++++.++.++. .++||+++++++++.|+++.+.+ ++ ......+.. . ...
T Consensus 298 ~~v~v~DvA~ai~~~~~~~~~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 374 (427)
T 4f6c_A 298 DFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFNEILQKQDMYETIGLTSVDREQ 374 (427)
T ss_dssp CCEEHHHHHHHHHHHTTSCCCCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred EEeeHHHHHHHHHHHHcCCCCCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHHHHHHhcCchhhhhhhhccccC
Confidence 99999999999999998774 46999999999999999999998 55 211110100 0 011
Q ss_pred CcccCChHHHH---HHcCCCccCCHHHHHHHHHHHHHHHh
Q 013226 386 HKRKPDITKAK---QLLGWEPRVTLRKGLPLMVADFRHRI 422 (447)
Q Consensus 386 ~~~~~d~~k~~---~~lG~~p~~s~~e~l~~~~~~~~~~~ 422 (447)
....+|+++.. +.+||.+....++.+++++++++...
T Consensus 375 ~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~ 414 (427)
T 4f6c_A 375 QLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIF 414 (427)
T ss_dssp EECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 23456777766 44699888545668999999888775
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.9e-32 Score=276.34 Aligned_cols=258 Identities=19% Similarity=0.184 Sum_probs=197.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhC---CCeEEEEecCCCCCc--cccccccC--------------CCceEEEeccc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDR---GDSVIVVDNYFTGKK--DNLIHHFG--------------NPRFELIRHDV 172 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~---G~~V~~l~r~~~~~~--~~~~~~~~--------------~~~v~~~~~D~ 172 (447)
..++|+||||||+||||++|+++|+++ |++|++++|...... ..+...+. ..++.++.+|+
T Consensus 70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 149 (478)
T 4dqv_A 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK 149 (478)
T ss_dssp CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence 457899999999999999999999999 899999999654211 11111111 25789999999
Q ss_pred cccc-----------ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCC
Q 013226 173 VEPI-----------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHP 240 (447)
Q Consensus 173 ~~~~-----------~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~ 240 (447)
.++. +.++|+||||||.... .++.+.+++|+.|+.+++++|++.++ +|||+||.++|+.....+
T Consensus 150 ~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~ 225 (478)
T 4dqv_A 150 SEPDLGLDQPMWRRLAETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSA 225 (478)
T ss_dssp TSGGGGCCHHHHHHHHHHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTT
T ss_pred CCcccCCCHHHHHHHHcCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCC
Confidence 7543 3469999999997543 45567889999999999999999987 999999999999877777
Q ss_pred CCCCcCCC-CCC-----CCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCc---cCCCchHHHHHHHHHhC
Q 013226 241 QAETYWGN-VNP-----IGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMC---IDDGRVVSNFVAQALRK 311 (447)
Q Consensus 241 ~~e~~~~~-~~~-----~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~---~~~~~~~~~~~~~~~~~ 311 (447)
++|+.... ..+ ....+.|+.||+.+|.++++++++.+++++++||++|||+... .+...++..++......
T Consensus 226 ~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~ 305 (478)
T 4dqv_A 226 FTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMAT 305 (478)
T ss_dssp CCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHH
T ss_pred cCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHc
Confidence 88773210 000 0112459999999999999998888999999999999998542 23355677777666654
Q ss_pred CCeEEe--cC------CCeeEccccHHHHHHHHHHHHcC----C--CCCcEEecCCCc--cCHHHHHHHHHHHhCCCCc
Q 013226 312 EPLTVY--GD------GKQTRSFQFVSDLVEGLIRLMEG----D--HVGPFNLGNPGE--FTMLELAEVVQEIIDRNAR 374 (447)
Q Consensus 312 ~~~~~~--~~------~~~~~~~i~v~D~a~ai~~~l~~----~--~~g~~~i~~~~~--~s~~el~~~i~~~~g~~~~ 374 (447)
+..+.. +. ++..++|+||+|+|++++.++.+ + ..++||+++++. +++.|+++.+.+. |.+..
T Consensus 306 g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~-g~~~~ 383 (478)
T 4dqv_A 306 GIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA-GYPIR 383 (478)
T ss_dssp CEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT-TCSCE
T ss_pred CcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc-CCCcc
Confidence 443321 11 15678999999999999999875 2 235999999988 9999999999995 66544
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-31 Score=273.82 Aligned_cols=299 Identities=18% Similarity=0.130 Sum_probs=219.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc--cccc-----------cccCCCceEEEecccccc-c---
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK--DNLI-----------HHFGNPRFELIRHDVVEP-I--- 176 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~--~~~~-----------~~~~~~~v~~~~~D~~~~-~--- 176 (447)
.+|+|||||||||||++|+++|+++|++|++++|...... ..+. ......++.++.+|+.+. .
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~ 228 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVL 228 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCCC
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCCC
Confidence 4678999999999999999999999999999999654210 0000 001135789999999884 2
Q ss_pred ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCC-----CCCCCCCCCcCCCCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD-----PLQHPQAETYWGNVNP 251 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~-----~~~~~~~e~~~~~~~~ 251 (447)
..++|+||||||... +..++...+++|+.|+.+++++|++.+.+|||+||.++ |. ....+++|+.+.. +
T Consensus 229 ~~~~D~Vih~Aa~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~--~ 302 (508)
T 4f6l_B 229 PENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVYK--G 302 (508)
T ss_dssp SSCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHTTTCEEEEEEESCT-TSEECTTCSCCEECTTCSCS--S
T ss_pred ccCCCEEEECCceec---CCCCHHHHhhhHHHHHHHHHHHHHhCCCcEEEeCChhh-ccCCccCCcCcccccccccc--c
Confidence 357999999999653 33456778899999999999999984459999999998 43 2345667764321 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC-----CCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID-----DGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
..+.+.|+.+|+.+|.+++.+.+ .|++++++||++||||..... ...++..++..+...+.++. ++++..++|
T Consensus 303 ~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~g~~~~~~ 380 (508)
T 4f6l_B 303 QLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVDF 380 (508)
T ss_dssp BCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET-TGGGSEEEC
T ss_pred ccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC-CccCceEEE
Confidence 33668999999999999999764 699999999999999986432 12346778887777766654 345788999
Q ss_pred ccHHHHHHHHHHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCC------------------CCCCCc
Q 013226 327 QFVSDLVEGLIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT------------------EDDPHK 387 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~------------------~~~~~~ 387 (447)
+|++|+|++++.++.++. .++||+++++++++.|+++.+.+.. ......+.+ ......
T Consensus 381 v~v~DvA~ai~~~~~~~~~~~~~nl~~~~~~s~~el~~~i~~~~---~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~ 457 (508)
T 4f6l_B 381 SFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKE---IELVSDESFNEILQKQDMYETIGLTSVDREQQL 457 (508)
T ss_dssp EEHHHHHHHHHHHTTBCCSCSEEEESCSCEEEHHHHHHHHHSSC---CEEECHHHHHHHHHTTCCHHHHHHHHTGGGSEE
T ss_pred EcHHHHHHHHHHHHhCCCCCCEEEeCCCCCCCHHHHHHHHHHcC---CcccCHHHHHHHHHhcCCccchhcccccccCcc
Confidence 999999999999998764 5699999999999999999998743 111100000 001123
Q ss_pred ccCChHHHH---HHcCCCccCCHHHHHHHHHHHHHHHhc
Q 013226 388 RKPDITKAK---QLLGWEPRVTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 388 ~~~d~~k~~---~~lG~~p~~s~~e~l~~~~~~~~~~~~ 423 (447)
..+|+++.. +.+||.+....++.+++++++++....
T Consensus 458 ~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~~ 496 (508)
T 4f6l_B 458 AMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFN 496 (508)
T ss_dssp CEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred eecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456776665 347998886668889999998888753
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-32 Score=272.18 Aligned_cols=250 Identities=23% Similarity=0.293 Sum_probs=202.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 194 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~ 194 (447)
|+|||||||||||++|+++|+++|+ +|++++|. .+.+..+..+.++|+|||+||....
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~-------------------~d~~~l~~~~~~~d~Vih~a~~~~~-- 59 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------TKEEELESALLKADFIVHLAGVNRP-- 59 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT-------------------CCHHHHHHHHHHCSEEEECCCSBCT--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC-------------------CCHHHHHHHhccCCEEEECCcCCCC--
Confidence 6899999999999999999999999 99998873 1122333445579999999997553
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 013226 195 YKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDY 272 (447)
Q Consensus 195 ~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~ 272 (447)
.++...+++|+.++.+++++|++.++ +|||+||.++|+ .+.|+.+|..+|.+++++
T Consensus 60 --~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~--------------------~~~Y~~sK~~~E~~~~~~ 117 (369)
T 3st7_A 60 --EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ--------------------DNPYGESKLQGEQLLREY 117 (369)
T ss_dssp --TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS--------------------CSHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC--------------------CCCchHHHHHHHHHHHHH
Confidence 24556778999999999999999884 799999999986 178999999999999999
Q ss_pred HhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC---CcEE
Q 013226 273 HRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV---GPFN 349 (447)
Q Consensus 273 ~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~---g~~~ 349 (447)
+++.+++++++||+++|||+..+....++..++..+..+.++.+ ++++..++|+|++|+|++++.+++++.. ++||
T Consensus 118 ~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~~~ 196 (369)
T 3st7_A 118 AEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPT 196 (369)
T ss_dssp HHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCC-SCTTCEEEEEEHHHHHHHHHHHHHTCCCEETTEEC
T ss_pred HHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEe-cCCCeEEEEEEHHHHHHHHHHHHhCCcccCCceEE
Confidence 99899999999999999998766556788999999998888776 4678889999999999999999998754 6999
Q ss_pred ecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHH
Q 013226 350 LGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415 (447)
Q Consensus 350 i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~ 415 (447)
+++++.+|+.|+++.+.+.+|.+..+...+. ............+||.|..+++++++...
T Consensus 197 i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~------~~~~~~~l~~~~l~~~p~~~~~~~l~~~~ 256 (369)
T 3st7_A 197 VPNVFKVTLGEIVDLLYKFKQSRLDRTLPKL------DNLFEKDLYSTYLSYLPSTDFSYPLLMNV 256 (369)
T ss_dssp CSCCEEEEHHHHHHHHHHHHHHHHHTCCCCT------TSHHHHHHHHHHHHTSCTTCSCCCCCEEE
T ss_pred eCCCCceeHHHHHHHHHHHhCCCcccccCCC------CCHHHHHHHHHHhcccCCcceeechhhcc
Confidence 9999999999999999999987644332111 11112233444589999887776655443
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-31 Score=258.26 Aligned_cols=264 Identities=22% Similarity=0.263 Sum_probs=203.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhC-CC-eEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDR-GD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQI 183 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~-G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~V 183 (447)
..+++|+||||||+||||++++++|+++ |+ +|++++|+.... ..+...+...++.++.+|+.+. ++.++|+|
T Consensus 17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~V 95 (344)
T 2gn4_A 17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQ-SEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDIC 95 (344)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHH-HHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEE
T ss_pred HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhH-HHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEE
Confidence 4467899999999999999999999999 97 999999863321 1122222335788999999775 35689999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHH
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK 262 (447)
||+||.......+.++.+.+++|+.|+.+++++|.+.++ +||++||..++. |.+.|+.||
T Consensus 96 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~~-------------------p~~~Y~~sK 156 (344)
T 2gn4_A 96 IHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAAN-------------------PINLYGATK 156 (344)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSS-------------------CCSHHHHHH
T ss_pred EECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccCC-------------------CccHHHHHH
Confidence 999997543333456778999999999999999999998 999999976531 237899999
Q ss_pred HHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCC-CeEEecCCCeeEccccHHHHHHHHHH
Q 013226 263 RTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKE-PLTVYGDGKQTRSFQFVSDLVEGLIR 338 (447)
Q Consensus 263 ~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~ai~~ 338 (447)
+++|.+++.++.+ .+++++++|||++|||+ +.++..++..+..+. ++++. ++...++|+|++|+|++++.
T Consensus 157 ~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~-----~~~i~~~~~~~~~g~~~~~i~-~~~~~r~~i~v~D~a~~v~~ 230 (344)
T 2gn4_A 157 LCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSR-----GSVVPFFKKLVQNKASEIPIT-DIRMTRFWITLDEGVSFVLK 230 (344)
T ss_dssp HHHHHHHHHGGGCCCSSCCEEEEECCCEETTCT-----TSHHHHHHHHHHHTCCCEEES-CTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEeccEECCC-----CCHHHHHHHHHHcCCCceEEe-CCCeEEeeEEHHHHHHHHHH
Confidence 9999999998764 58999999999999986 356777888888887 77765 66788899999999999999
Q ss_pred HHcCCCCC-cEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCC-CCCcccCChHHHHHHcCCCccC
Q 013226 339 LMEGDHVG-PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED-DPHKRKPDITKAKQLLGWEPRV 405 (447)
Q Consensus 339 ~l~~~~~g-~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~-~~~~~~~d~~k~~~~lG~~p~~ 405 (447)
++++...| +|++.++ .+++.|+++.+.+.+ .+...+.... ......++..+.++.++|...+
T Consensus 231 ~l~~~~~g~~~~~~~~-~~s~~el~~~i~~~~----~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~~~~ 294 (344)
T 2gn4_A 231 SLKRMHGGEIFVPKIP-SMKMTDLAKALAPNT----PTKIIGIRPGEKLHEVMIPKDESHLALEFEDFF 294 (344)
T ss_dssp HHHHCCSSCEEEECCC-EEEHHHHHHHHCTTC----CEEECCCCTTCCSSCEEECGGGGGGEEECSSEE
T ss_pred HHhhccCCCEEecCCC-cEEHHHHHHHHHHhC----CeeEcCCCCCccHhhhccCHhHHHhhccCCCEE
Confidence 99876655 8888765 699999999998643 3333322212 2233445666666667776554
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=255.23 Aligned_cols=252 Identities=14% Similarity=0.170 Sum_probs=194.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC--CCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag 188 (447)
|+|+||||+||||++++++|+++ |++|++++|+..... .+ ...++.++.+|+.+. ++.++|+|||+|+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~l----~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS-TL----ADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH-HH----HHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh-HH----hhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 57999999999999999999999 999999999643321 11 113578888998765 4568999999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAET 267 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~ 267 (447)
... . . ++|+.++.+++++|++.++ +||++||.++|.. + ..|+.+|..+|.
T Consensus 76 ~~~------~--~--~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~---------------~----~~y~~~K~~~E~ 126 (287)
T 2jl1_A 76 PHY------D--N--TLLIVQHANVVKAARDAGVKHIAYTGYAFAEES---------------I----IPLAHVHLATEY 126 (287)
T ss_dssp CCS------C--H--HHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGC---------------C----STHHHHHHHHHH
T ss_pred CCc------C--c--hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC---------------C----CchHHHHHHHHH
Confidence 521 1 1 5799999999999999998 9999999987621 1 469999999999
Q ss_pred HHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC-C-
Q 013226 268 LTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH-V- 345 (447)
Q Consensus 268 ~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~-~- 345 (447)
++++ .+++++++||+.++|+.. ..+ +...+..+... ++.++..++|+|++|+|++++.+++++. .
T Consensus 127 ~~~~----~~~~~~ilrp~~~~~~~~----~~~----~~~~~~~~~~~-~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g 193 (287)
T 2jl1_A 127 AIRT----TNIPYTFLRNALYTDFFV----NEG----LRASTESGAIV-TNAGSGIVNSVTRNELALAAATVLTEEGHEN 193 (287)
T ss_dssp HHHH----TTCCEEEEEECCBHHHHS----SGG----GHHHHHHTEEE-ESCTTCCBCCBCHHHHHHHHHHHHTSSSCTT
T ss_pred HHHH----cCCCeEEEECCEeccccc----hhh----HHHHhhCCcee-ccCCCCccCccCHHHHHHHHHHHhcCCCCCC
Confidence 8854 689999999999887531 112 22233323333 4556678899999999999999998753 3
Q ss_pred CcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC--------CCC----------------CcccCChHHHHHHcCC
Q 013226 346 GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE--------DDP----------------HKRKPDITKAKQLLGW 401 (447)
Q Consensus 346 g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~--------~~~----------------~~~~~d~~k~~~~lG~ 401 (447)
++||+++++.+|+.|+++.+.+.+|.+..+...|... ..+ .....|++|++++||
T Consensus 194 ~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG- 272 (287)
T 2jl1_A 194 KTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSDDLQKLIG- 272 (287)
T ss_dssp EEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHS-
T ss_pred cEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCchHHHHHhC-
Confidence 4999999999999999999999999887765554210 111 234568899999999
Q ss_pred CccCCHHHHHHHHHH
Q 013226 402 EPRVTLRKGLPLMVA 416 (447)
Q Consensus 402 ~p~~s~~e~l~~~~~ 416 (447)
|.++++|+|+++++
T Consensus 273 -~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 273 -SLTPLKETVKQALK 286 (287)
T ss_dssp -SCCCHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHhc
Confidence 66699999999875
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=246.02 Aligned_cols=228 Identities=21% Similarity=0.243 Sum_probs=183.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~ 189 (447)
+|+|+||||+||||++++++|+++|++|++++|+..... ..++.++.+|+.+. .+.++|+||||||.
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 73 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA--------EAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV 73 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC--------CTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc--------CCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence 468999999999999999999999999999999654211 13568888998765 35679999999996
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCC-CCCCCCCCcCCCCCCCCCCChHHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDP-LQHPQAETYWGNVNPIGVRSCYDEGKRTAET 267 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~-~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~ 267 (447)
.. ..+....+++|+.++.++++++++.++ +||++||..+|+.. ...+++|+ .+..+.+.|+.+|+.+|.
T Consensus 74 ~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~-----~~~~~~~~Y~~sK~~~e~ 144 (267)
T 3ay3_A 74 SV----ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTE-----VPRRPDSLYGLSKCFGED 144 (267)
T ss_dssp CS----CCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTT-----SCCCCCSHHHHHHHHHHH
T ss_pred CC----CCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCC-----CCCCCCChHHHHHHHHHH
Confidence 52 345677899999999999999999887 99999999999863 34677787 566677899999999999
Q ss_pred HHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC--
Q 013226 268 LTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV-- 345 (447)
Q Consensus 268 ~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~-- 345 (447)
+++.+..+.+++++++||+++|+... +++...+|+|++|+|++++.+++++..
T Consensus 145 ~~~~~~~~~gi~~~~lrp~~v~~~~~-------------------------~~~~~~~~~~~~dva~~~~~~~~~~~~~~ 199 (267)
T 3ay3_A 145 LASLYYHKFDIETLNIRIGSCFPKPK-------------------------DARMMATWLSVDDFMRLMKRAFVAPKLGC 199 (267)
T ss_dssp HHHHHHHTTCCCEEEEEECBCSSSCC-------------------------SHHHHHHBCCHHHHHHHHHHHHHSSCCCE
T ss_pred HHHHHHHHcCCCEEEEeceeecCCCC-------------------------CCCeeeccccHHHHHHHHHHHHhCCCCCc
Confidence 99998888899999999999984210 112346799999999999999998754
Q ss_pred CcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHH
Q 013226 346 GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416 (447)
Q Consensus 346 g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~ 416 (447)
++|++.++. .....|..++ +.|||+|.++++++++++.+
T Consensus 200 ~~~~~~~~~-------------------------------~~~~~d~~~~-~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 200 TVVYGASAN-------------------------------TESWWDNDKS-AFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp EEEEECCSC-------------------------------SSCCBCCGGG-GGGCCCCCCCGGGGHHHHHH
T ss_pred eeEecCCCc-------------------------------cccccCHHHH-HHcCCCCCCCHHHHHHHHHh
Confidence 467765432 1234677777 78999999999999988765
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=253.13 Aligned_cols=252 Identities=15% Similarity=0.159 Sum_probs=189.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhC--CCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACP 189 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~ 189 (447)
+|+||||+||||++++++|+++ |++|++++|+..... .+ ...++.++.+|+.+. ++.++|+|||+|+.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~----~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 75 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ-AL----AAQGITVRQADYGDEAALTSALQGVEKLLLISSS 75 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH-HH----HHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh-hh----hcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 4899999999999999999999 999999999644321 11 113578888998765 45689999999984
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
.. +.|+.++.+++++|++.++ +||++||.++|. .+ ..|+.+|..+|.+
T Consensus 76 ~~------------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~---------------~~----~~y~~sK~~~e~~ 124 (286)
T 2zcu_A 76 EV------------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT---------------SP----LGLADEHIETEKM 124 (286)
T ss_dssp ------------------CHHHHHHHHHHHHTCCEEEEEEETTTTT---------------CC----STTHHHHHHHHHH
T ss_pred Cc------------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC---------------Cc----chhHHHHHHHHHH
Confidence 21 1588999999999999997 999999988762 11 4699999999998
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC--CC
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH--VG 346 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~--~g 346 (447)
+++ .+++++++||+.++++. ..++.....++.+. +++++..++|+|++|+|++++.+++++. .+
T Consensus 125 ~~~----~~~~~~ilrp~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~ 190 (286)
T 2zcu_A 125 LAD----SGIVYTLLRNGWYSENY---------LASAPAALEHGVFI-GAAGDGKIASATRADYAAAAARVISEAGHEGK 190 (286)
T ss_dssp HHH----HCSEEEEEEECCBHHHH---------HTTHHHHHHHTEEE-ESCTTCCBCCBCHHHHHHHHHHHHHSSSCTTC
T ss_pred HHH----cCCCeEEEeChHHhhhh---------HHHhHHhhcCCcee-ccCCCCccccccHHHHHHHHHHHhcCCCCCCc
Confidence 864 68999999998766542 11233334444444 5566788899999999999999998753 35
Q ss_pred cEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC--------CCC----------------CcccCChHHHHHHcCCC
Q 013226 347 PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE--------DDP----------------HKRKPDITKAKQLLGWE 402 (447)
Q Consensus 347 ~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~--------~~~----------------~~~~~d~~k~~~~lG~~ 402 (447)
.||+++++.+|+.|+++.+.+.+|.+..+...|... ..+ .....|++|++++|||.
T Consensus 191 ~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 270 (286)
T 2zcu_A 191 VYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTLSKLIGHP 270 (286)
T ss_dssp EEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCCHHHHHHTSC
T ss_pred eEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCchHHHHHhCcC
Confidence 999999989999999999999999887765544321 111 12456889999999975
Q ss_pred ccCCHHHHHHHHHHHHH
Q 013226 403 PRVTLRKGLPLMVADFR 419 (447)
Q Consensus 403 p~~s~~e~l~~~~~~~~ 419 (447)
+ ++++|+|+++++||+
T Consensus 271 ~-~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 271 T-TTLAESVSHLFNVNN 286 (286)
T ss_dssp C-CCHHHHHHGGGC---
T ss_pred C-CCHHHHHHHHHhhcC
Confidence 5 499999999998763
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-30 Score=236.27 Aligned_cols=216 Identities=17% Similarity=0.110 Sum_probs=164.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~ 189 (447)
+|+|+||||+||||++++++|+++|++|++++|+...... + ..++.++.+|+.+. .+.++|+|||+||.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~-----~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI-E-----NEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC-C-----CTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh-c-----cCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 4789999999999999999999999999999997543221 1 15789999999775 35689999999985
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
.. ...+.+++|+.++.+++++|++.++ +||++||.++|+..... ..|+ .+..+.+.|+.+|..+|.+
T Consensus 78 ~~------~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~-~~~~-----~~~~p~~~Y~~sK~~~e~~ 145 (227)
T 3dhn_A 78 GW------NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGL-RLMD-----SGEVPENILPGVKALGEFY 145 (227)
T ss_dssp ------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTE-EGGG-----TTCSCGGGHHHHHHHHHHH
T ss_pred CC------CChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCC-cccc-----CCcchHHHHHHHHHHHHHH
Confidence 42 1223677999999999999999998 99999999876543222 2233 3455678999999999999
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC--C
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV--G 346 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~--g 346 (447)
++.++++.+++++++||+++|||+..... + ..+....+... +. ++|+|++|+|++++.+++++.. .
T Consensus 146 ~~~~~~~~~~~~~ilrp~~v~g~~~~~~~--~--------~~~~~~~~~~~-~~-~~~i~~~Dva~ai~~~l~~~~~~g~ 213 (227)
T 3dhn_A 146 LNFLMKEKEIDWVFFSPAADMRPGVRTGR--Y--------RLGKDDMIVDI-VG-NSHISVEDYAAAMIDELEHPKHHQE 213 (227)
T ss_dssp HHTGGGCCSSEEEEEECCSEEESCCCCCC--C--------EEESSBCCCCT-TS-CCEEEHHHHHHHHHHHHHSCCCCSE
T ss_pred HHHHhhccCccEEEEeCCcccCCCccccc--e--------eecCCCcccCC-CC-CcEEeHHHHHHHHHHHHhCccccCc
Confidence 99988788999999999999999753211 1 11222222222 22 7899999999999999998863 4
Q ss_pred cEEecCCCccCHHH
Q 013226 347 PFNLGNPGEFTMLE 360 (447)
Q Consensus 347 ~~~i~~~~~~s~~e 360 (447)
.|+++++++.+|.+
T Consensus 214 ~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 214 RFTIGYLEHHHHHH 227 (227)
T ss_dssp EEEEECCSCCC---
T ss_pred EEEEEeehhcccCC
Confidence 99999999998864
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=240.15 Aligned_cols=202 Identities=20% Similarity=0.253 Sum_probs=169.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag 188 (447)
++|+|+||||+||||++++++|+++|++|++++|...... ..++.++.+|+.+. .+.++|+||||||
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag 73 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA--------GPNEECVQCDLADANAVNAMVAGCDGIVHLGG 73 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC--------CTTEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc--------CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence 4678999999999999999999999999999999654322 34788999999875 3568999999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCC-CCCCCCCCCcCCCCCCCCCCChHHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGD-PLQHPQAETYWGNVNPIGVRSCYDEGKRTAE 266 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~-~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E 266 (447)
.. ...+..+.+++|+.|+.++++++++.+. +||++||..+||. +...+++|+ .+..+.+.|+.||+.+|
T Consensus 74 ~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~-----~~~~~~~~Y~~sK~~~e 144 (267)
T 3rft_A 74 IS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPD-----VPARPDGLYGVSKCFGE 144 (267)
T ss_dssp CC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTT-----SCCCCCSHHHHHHHHHH
T ss_pred Cc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCC-----CCCCCCChHHHHHHHHH
Confidence 73 2345778999999999999999999987 9999999999974 344566776 56677799999999999
Q ss_pred HHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCC
Q 013226 267 TLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG 346 (447)
Q Consensus 267 ~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g 346 (447)
.+++.+++++++++++|||+.|||+. .++....+|++++|+++++..+++.+..+
T Consensus 145 ~~~~~~a~~~g~~~~~vr~~~v~~~~-------------------------~~~~~~~~~~~~~d~a~~~~~~~~~~~~~ 199 (267)
T 3rft_A 145 NLARMYFDKFGQETALVRIGSCTPEP-------------------------NNYRMLSTWFSHDDFVSLIEAVFRAPVLG 199 (267)
T ss_dssp HHHHHHHHHHCCCEEEEEECBCSSSC-------------------------CSTTHHHHBCCHHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHhCCeEEEEEeecccCCC-------------------------CCCCceeeEEcHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999862 23345568999999999999999987653
Q ss_pred --cEEecCCCccC
Q 013226 347 --PFNLGNPGEFT 357 (447)
Q Consensus 347 --~~~i~~~~~~s 357 (447)
+++++++++.+
T Consensus 200 ~~~~~~~s~~~~~ 212 (267)
T 3rft_A 200 CPVVWGASANDAG 212 (267)
T ss_dssp SCEEEECCCCTTC
T ss_pred ceEEEEeCCCCCC
Confidence 78888766544
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=228.80 Aligned_cols=212 Identities=17% Similarity=0.219 Sum_probs=163.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCce-EEEecccc---cccccCCCEEEEe
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRF-ELIRHDVV---EPILLEVDQIYHL 186 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~D~~---~~~~~~~d~Vih~ 186 (447)
..+++|+|+||||+||||++++++|+++|++|++++|+..... .+ ...++ .++.+|+. .+.+.++|+||||
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~-~~----~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGP-EL----RERGASDIVVANLEEDFSHAFASIDAVVFA 91 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH-HH----HHTTCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHH-HH----HhCCCceEEEcccHHHHHHHHcCCCEEEEC
Confidence 4578999999999999999999999999999999999644221 11 11256 78888886 3346689999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTA 265 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~ 265 (447)
||... ..++...+++|+.++.+++++|++.++ +||++||...+.. +. .+ .+.+.|+.+|+.+
T Consensus 92 ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------~~-----~~-~~~~~Y~~sK~~~ 154 (236)
T 3e8x_A 92 AGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-------DQ-----GP-MNMRHYLVAKRLA 154 (236)
T ss_dssp CCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-------GG-----SC-GGGHHHHHHHHHH
T ss_pred CCCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-------CC-----Ch-hhhhhHHHHHHHH
Confidence 99653 246778999999999999999999887 9999999554321 11 11 3457899999999
Q ss_pred HHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC-
Q 013226 266 ETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH- 344 (447)
Q Consensus 266 E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~- 344 (447)
|.+++ +.+++++++||+.+||+... ..+....+.....++++++|+|++++.+++++.
T Consensus 155 e~~~~----~~gi~~~~lrpg~v~~~~~~-----------------~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~ 213 (236)
T 3e8x_A 155 DDELK----RSSLDYTIVRPGPLSNEEST-----------------GKVTVSPHFSEITRSITRHDVAKVIAELVDQQHT 213 (236)
T ss_dssp HHHHH----HSSSEEEEEEECSEECSCCC-----------------SEEEEESSCSCCCCCEEHHHHHHHHHHHTTCGGG
T ss_pred HHHHH----HCCCCEEEEeCCcccCCCCC-----------------CeEEeccCCCcccCcEeHHHHHHHHHHHhcCccc
Confidence 99876 57999999999999998531 122333444556889999999999999999873
Q ss_pred C-CcEEecCCCccCHHHHHHHHH
Q 013226 345 V-GPFNLGNPGEFTMLELAEVVQ 366 (447)
Q Consensus 345 ~-g~~~i~~~~~~s~~el~~~i~ 366 (447)
. ++|+++++ .+++.|+++.+.
T Consensus 214 ~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 214 IGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp TTEEEEEEEC-SEEHHHHHHTC-
T ss_pred cCCeEEEeCC-CcCHHHHHHHhc
Confidence 3 49999877 699999998764
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=245.81 Aligned_cols=273 Identities=16% Similarity=0.173 Sum_probs=194.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc--cccCCCceEEEecccccc-----ccc--CCCEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI--HHFGNPRFELIRHDVVEP-----ILL--EVDQI 183 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~D~~~~-----~~~--~~d~V 183 (447)
+++|+|+|||||||||++|++.|+++|++|++++|.......... ..+...+++++.+|+.+. ++. ++|+|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 87 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV 87 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence 346789999999999999999999999999999997533221111 112234788999999775 355 89999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHH
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEG 261 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~s 261 (447)
||+||. .|+.++.+++++|++.| + +||+ | +||.. .+|+ .+..+.+.|+.+
T Consensus 88 i~~a~~---------------~n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~----~~e~-----~~~~p~~~y~~s 139 (346)
T 3i6i_A 88 VSTVGG---------------ESILDQIALVKAMKAVGTIKRFLP-S---EFGHD----VNRA-----DPVEPGLNMYRE 139 (346)
T ss_dssp EECCCG---------------GGGGGHHHHHHHHHHHCCCSEEEC-S---CCSSC----TTTC-----CCCTTHHHHHHH
T ss_pred EECCch---------------hhHHHHHHHHHHHHHcCCceEEee-c---ccCCC----CCcc-----CcCCCcchHHHH
Confidence 999984 38889999999999999 7 6664 4 35432 2333 455566899999
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 262 KRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 262 K~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
|..+|.++++ .+++++++||+.++|.... .+.. .......++.+.++++++..++|+|++|+|++++.+++
T Consensus 140 K~~~e~~l~~----~g~~~tivrpg~~~g~~~~----~~~~-~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~ 210 (346)
T 3i6i_A 140 KRRVRQLVEE----SGIPFTYICCNSIASWPYY----NNIH-PSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVD 210 (346)
T ss_dssp HHHHHHHHHH----TTCCBEEEECCEESSCCCS----CC------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH----cCCCEEEEEecccccccCc----cccc-cccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHh
Confidence 9999998865 6899999999999997532 1111 11112255678889999999999999999999999999
Q ss_pred CCC--CCcEEecC-CCccCHHHHHHHHHHHhCCCCcEEecCCCCC--------CCC---------------cccCCh---
Q 013226 342 GDH--VGPFNLGN-PGEFTMLELAEVVQEIIDRNARIEFRPNTED--------DPH---------------KRKPDI--- 392 (447)
Q Consensus 342 ~~~--~g~~~i~~-~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~--------~~~---------------~~~~d~--- 392 (447)
++. .+.|++++ ++.+|+.|+++.+.+.+|.+..+...+.... .+. ...++.
T Consensus 211 ~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~ 290 (346)
T 3i6i_A 211 DVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGP 290 (346)
T ss_dssp CGGGTTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTTCTTTSSCCCST
T ss_pred CccccCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhccCCCcccccCCC
Confidence 864 35899985 4789999999999999999887765442100 000 000111
Q ss_pred --HHHHHHc-CCCccCCHHHHHHHHHHHHHHHhc
Q 013226 393 --TKAKQLL-GWEPRVTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 393 --~k~~~~l-G~~p~~s~~e~l~~~~~~~~~~~~ 423 (447)
.++.+++ ++++. +++|.|+++++|++.+..
T Consensus 291 ~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~~~ 323 (346)
T 3i6i_A 291 EDVEVTTLYPEDSFR-TVEECFGEYIVKMEEKQP 323 (346)
T ss_dssp TEEEHHHHSTTCCCC-CHHHHHHHHHCC------
T ss_pred CcccHHHhCCCCCcC-cHHHHHHHHHHHhhcccc
Confidence 2234433 67776 999999999999987754
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-28 Score=231.43 Aligned_cols=248 Identities=17% Similarity=0.223 Sum_probs=179.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~ 189 (447)
|+|+|||||||||++++++|+++ |++|++++|+...... +...+++++.+|+.++ ++.++|+|||||+.
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~-----~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPD-----DWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCG-----GGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHH-----hhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 57999999999999999999998 9999999997543221 1234788999999775 46789999999985
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
... ...|+.++.+++++|++.++ +||++||.+. ... .+. .+...+..+|..
T Consensus 76 ~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~---~~~-----------~~~----~~~~~~~~~e~~ 127 (289)
T 3e48_A 76 IHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYAD---QHN-----------NPF----HMSPYFGYASRL 127 (289)
T ss_dssp CCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCC---STT-----------CCS----TTHHHHHHHHHH
T ss_pred Ccc----------chhhHHHHHHHHHHHHHcCCCEEEEEcccCC---CCC-----------CCC----ccchhHHHHHHH
Confidence 432 13589999999999999998 9999999532 111 111 122222233333
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC--CC
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH--VG 346 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~--~g 346 (447)
..+.+++++++||+.+||+. ..++.....+.. ..++.++..++|++++|+|++++.++.++. .+
T Consensus 128 ----~~~~g~~~~ilrp~~~~~~~---------~~~~~~~~~~~~-~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~g~ 193 (289)
T 3e48_A 128 ----LSTSGIDYTYVRMAMYMDPL---------KPYLPELMNMHK-LIYPAGDGRINYITRNDIARGVIAIIKNPDTWGK 193 (289)
T ss_dssp ----HHHHCCEEEEEEECEESTTH---------HHHHHHHHHHTE-ECCCCTTCEEEEECHHHHHHHHHHHHHCGGGTTC
T ss_pred ----HHHcCCCEEEEecccccccc---------HHHHHHHHHCCC-EecCCCCceeeeEEHHHHHHHHHHHHcCCCcCCc
Confidence 34579999999999999973 233333433332 335567788999999999999999998875 45
Q ss_pred cEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCC-------C-CCC-------------CcccCChHHHHHHcCCCccC
Q 013226 347 PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT-------E-DDP-------------HKRKPDITKAKQLLGWEPRV 405 (447)
Q Consensus 347 ~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-------~-~~~-------------~~~~~d~~k~~~~lG~~p~~ 405 (447)
+||++ ++.+|+.|+++.+.+.+|.+..+...+.. . ... .....+...+++.+|++|+
T Consensus 194 ~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~p~- 271 (289)
T 3e48_A 194 RYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLDQESNDFKQLVNDQPQ- 271 (289)
T ss_dssp EEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTCCCCSHHHHHHSSCCC-
T ss_pred eEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCccccCchHHHHhCCCCC-
Confidence 99999 99999999999999999987655432210 0 000 0122456677888999888
Q ss_pred CHHHHHH
Q 013226 406 TLRKGLP 412 (447)
Q Consensus 406 s~~e~l~ 412 (447)
+++|-++
T Consensus 272 ~~~~~~~ 278 (289)
T 3e48_A 272 TLQSFLQ 278 (289)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8877443
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=219.65 Aligned_cols=212 Identities=14% Similarity=0.195 Sum_probs=139.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc---cccCCCEEEEeccCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP---ILLEVDQIYHLACPASP 192 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~d~Vih~Ag~~~~ 192 (447)
|+|+||||+||||++++++|+++|++|++++|+..... .+ . .++.++.+|+.+. .+.++|+||||||....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~-~~----~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 74 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKIT-QT----H-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPD 74 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHH-HH----C-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTT
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhh-hc----c-CCCeEEeccccChhhhhhcCCCEEEECCcCCcc
Confidence 68999999999999999999999999999999643211 11 1 4688999999876 46789999999996321
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccc-cCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHH
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEV-YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTM 270 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v-~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 270 (447)
..+.|+.++.+++++|++.++ ++|++||..+ |+.+...+..|+ .+..+.+.|+.+|..+|.+ .
T Consensus 75 ---------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~-----~~~~~~~~y~~~k~~~e~~-~ 139 (221)
T 3ew7_A 75 ---------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLES-----KGLREAPYYPTARAQAKQL-E 139 (221)
T ss_dssp ---------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC------------------------CCCSCCHHHHHHHH-H
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCcccccc-----CCCCCHHHHHHHHHHHHHH-H
Confidence 134699999999999999976 9999999875 444443344444 3445567899999999987 3
Q ss_pred HHHh-hhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC--Cc
Q 013226 271 DYHR-GLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV--GP 347 (447)
Q Consensus 271 ~~~~-~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~--g~ 347 (447)
.+.. +.+++++++||+.+|||+... . .+ ...+..+...+++ .++++++|+|++++.+++++.. ..
T Consensus 140 ~~~~~~~gi~~~ivrp~~v~g~~~~~--~----~~---~~~~~~~~~~~~~---~~~i~~~Dva~~~~~~l~~~~~~g~~ 207 (221)
T 3ew7_A 140 HLKSHQAEFSWTYISPSAMFEPGERT--G----DY---QIGKDHLLFGSDG---NSFISMEDYAIAVLDEIERPNHLNEH 207 (221)
T ss_dssp HHHTTTTTSCEEEEECSSCCCCC---------------------------------CCCHHHHHHHHHHHHHSCSCTTSE
T ss_pred HHHhhccCccEEEEeCcceecCCCcc--C----ce---EeccccceecCCC---CceEeHHHHHHHHHHHHhCccccCCE
Confidence 4444 679999999999999984211 1 11 1123333433332 3699999999999999998754 59
Q ss_pred EEecCCCccCHHH
Q 013226 348 FNLGNPGEFTMLE 360 (447)
Q Consensus 348 ~~i~~~~~~s~~e 360 (447)
||++++.+.+.+|
T Consensus 208 ~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 208 FTVAGKLEHHHHH 220 (221)
T ss_dssp EECCC--------
T ss_pred EEECCCCcccccc
Confidence 9999988887665
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=212.88 Aligned_cols=201 Identities=16% Similarity=0.210 Sum_probs=159.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccc-c-----cccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE-P-----ILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-~-----~~~~~d~Vih~Ag~ 189 (447)
|+|+||||+||||++++++|+++|++|++++|+....... .++.++.+|+.+ . .+.++|+||||||.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-------NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-------TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-------CCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 5899999999999999999999999999999975432211 578999999988 4 45689999999996
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
... +.+++|+.++.+++++|++.++ +||++||.++++.. +..| .+..+.+.|+.+|..+|.+
T Consensus 74 ~~~--------~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~---~~~e------~~~~~~~~Y~~sK~~~e~~ 136 (219)
T 3dqp_A 74 GGK--------SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE---KWIG------AGFDALKDYYIAKHFADLY 136 (219)
T ss_dssp TTS--------SCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG---GCCS------HHHHHTHHHHHHHHHHHHH
T ss_pred CCC--------CcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC---cccc------cccccccHHHHHHHHHHHH
Confidence 542 2556899999999999999997 99999998776431 2222 1233458899999999999
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC--C
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV--G 346 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~--g 346 (447)
++ +..+++++++||+.+||+... + .+. .+ +..+++++++|+|++++.+++++.. +
T Consensus 137 ~~---~~~~i~~~ilrp~~v~g~~~~---~--------------~~~-~~--~~~~~~i~~~Dva~~i~~~l~~~~~~g~ 193 (219)
T 3dqp_A 137 LT---KETNLDYTIIQPGALTEEEAT---G--------------LID-IN--DEVSASNTIGDVADTIKELVMTDHSIGK 193 (219)
T ss_dssp HH---HSCCCEEEEEEECSEECSCCC---S--------------EEE-ES--SSCCCCEEHHHHHHHHHHHHTCGGGTTE
T ss_pred HH---hccCCcEEEEeCceEecCCCC---C--------------ccc-cC--CCcCCcccHHHHHHHHHHHHhCccccCc
Confidence 86 467999999999999998531 1 111 12 4667899999999999999998653 4
Q ss_pred cEEecCCCccCHHHHHHH
Q 013226 347 PFNLGNPGEFTMLELAEV 364 (447)
Q Consensus 347 ~~~i~~~~~~s~~el~~~ 364 (447)
+||++++ ..++.|+.+.
T Consensus 194 ~~~i~~g-~~~~~e~~~~ 210 (219)
T 3dqp_A 194 VISMHNG-KTAIKEALES 210 (219)
T ss_dssp EEEEEEC-SEEHHHHHHT
T ss_pred EEEeCCC-CccHHHHHHH
Confidence 9999876 5999998764
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=211.24 Aligned_cols=214 Identities=12% Similarity=0.040 Sum_probs=153.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc---cccCCCEEEEeccCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP---ILLEVDQIYHLACPASP 192 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~~~~d~Vih~Ag~~~~ 192 (447)
|+|+|||||||||++++++|+++|++|++++|+..... .+...++.++.+|+.+. .+.++|+||||||....
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~-----~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 75 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAA-----DRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWG 75 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-----HHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTT
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccc-----cccCCCceEEecccccccHhhcccCCEEEECCccCCC
Confidence 67999999999999999999999999999999643211 11234788999999876 46789999999997521
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc-CCCCCC--CCCCCcCCCCCCCCCCChHHHHHHHHHHHH
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY-GDPLQH--PQAETYWGNVNPIGVRSCYDEGKRTAETLT 269 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~-g~~~~~--~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~ 269 (447)
. ....+|+.++.+++++|++.+.|||++||.+.+ +..... +.+|. ....+.+.|+.+|..+|. +
T Consensus 76 ~-------~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~-----~~~~~~~~y~~sK~~~e~-~ 142 (224)
T 3h2s_A 76 S-------GRGYLHLDFATHLVSLLRNSDTLAVFILGSASLAMPGADHPMILDFP-----ESAASQPWYDGALYQYYE-Y 142 (224)
T ss_dssp S-------SCTHHHHHHHHHHHHTCTTCCCEEEEECCGGGSBCTTCSSCGGGGCC-----GGGGGSTTHHHHHHHHHH-H
T ss_pred c-------chhhHHHHHHHHHHHHHHHcCCcEEEEecceeeccCCCCccccccCC-----CCCccchhhHHHHHHHHH-H
Confidence 1 124689999999999999988899999998744 333322 22222 223346889999999995 4
Q ss_pred HHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC--Cc
Q 013226 270 MDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV--GP 347 (447)
Q Consensus 270 ~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~--g~ 347 (447)
..+.++.+++++++||+.+|||+... . +. .....+.. +....++++++|+|++++.+++++.. .+
T Consensus 143 ~~~~~~~~i~~~ivrp~~v~g~~~~~--~-~~-------~~~~~~~~---~~~~~~~i~~~DvA~~~~~~l~~~~~~g~~ 209 (224)
T 3h2s_A 143 QFLQMNANVNWIGISPSEAFPSGPAT--S-YV-------AGKDTLLV---GEDGQSHITTGNMALAILDQLEHPTAIRDR 209 (224)
T ss_dssp HHHTTCTTSCEEEEEECSBCCCCCCC--C-EE-------EESSBCCC---CTTSCCBCCHHHHHHHHHHHHHSCCCTTSE
T ss_pred HHHHhcCCCcEEEEcCccccCCCccc--C-ce-------eccccccc---CCCCCceEeHHHHHHHHHHHhcCccccCCE
Confidence 55556779999999999999985321 1 10 11111221 22346899999999999999998753 59
Q ss_pred EEecCCCccCHHH
Q 013226 348 FNLGNPGEFTMLE 360 (447)
Q Consensus 348 ~~i~~~~~~s~~e 360 (447)
|++++.+..++.|
T Consensus 210 ~~~~~~~~~~~~~ 222 (224)
T 3h2s_A 210 IVVRDADLEHHHH 222 (224)
T ss_dssp EEEEECC------
T ss_pred EEEecCcchhccc
Confidence 9999877766544
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-27 Score=213.12 Aligned_cols=202 Identities=20% Similarity=0.177 Sum_probs=155.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccccccccCCCceEEEecccccccc-cC--CCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL-LE--VDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~--~d~Vih~Ag 188 (447)
++|+|+||||+|+||++++++|+++|+ +|++++|+... ...++.++.+|+.+... .. +|+||||||
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---------~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a~ 74 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------EHPRLDNPVGPLAELLPQLDGSIDTAFCCLG 74 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------CCTTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---------cCCCceEEeccccCHHHHHHhhhcEEEECee
Confidence 468999999999999999999999998 99999986543 12356777788765421 11 899999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAET 267 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~ 267 (447)
.... ...+..+.+++|+.++.++++++++.++ +||++||..+|+. +.+.|+.+|..+|.
T Consensus 75 ~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~------------------~~~~y~~sK~~~e~ 134 (215)
T 2a35_A 75 TTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELEQ 134 (215)
T ss_dssp CCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHHH
T ss_pred eccc--cCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC------------------CccHHHHHHHHHHH
Confidence 6431 2345778899999999999999999987 8999999988753 12689999999999
Q ss_pred HHHHHHhhhCCc-EEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCC
Q 013226 268 LTMDYHRGLGIE-ARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG 346 (447)
Q Consensus 268 ~~~~~~~~~~i~-~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g 346 (447)
+++. .+++ ++++||+.+|||... ..++..+ . ....+. +++ .++++|++|+|++++.+++++..+
T Consensus 135 ~~~~----~~~~~~~~vrp~~v~g~~~~---~~~~~~~----~-~~~~~~-~~~--~~~~i~~~Dva~~~~~~~~~~~~~ 199 (215)
T 2a35_A 135 ALQE----QGWPQLTIARPSLLFGPREE---FRLAEIL----A-APIARI-LPG--KYHGIEACDLARALWRLALEEGKG 199 (215)
T ss_dssp HHTT----SCCSEEEEEECCSEESTTSC---EEGGGGT----T-CCCC-----C--HHHHHHHHHHHHHHHHHHTCCCSE
T ss_pred HHHH----cCCCeEEEEeCceeeCCCCc---chHHHHH----H-Hhhhhc-cCC--CcCcEeHHHHHHHHHHHHhcCCCC
Confidence 8765 5899 999999999999753 1222211 1 222222 222 568999999999999999988878
Q ss_pred cEEecCCCccCHH
Q 013226 347 PFNLGNPGEFTML 359 (447)
Q Consensus 347 ~~~i~~~~~~s~~ 359 (447)
.||+++++.+++.
T Consensus 200 ~~~i~~~~~~~~~ 212 (215)
T 2a35_A 200 VRFVESDELRKLG 212 (215)
T ss_dssp EEEEEHHHHHHHH
T ss_pred ceEEcHHHHHHhh
Confidence 9999987665543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-27 Score=224.14 Aligned_cols=224 Identities=17% Similarity=0.149 Sum_probs=167.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEecc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLAC 188 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag 188 (447)
+|+|+||||||+||++++++|+++| ++|++++|+...... ..+...+++++.+|+.++ ++.++|+|||+|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~---~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA---KELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH---HHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH---HHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 5789999999999999999999999 999999996543211 111123578888998775 4578999999997
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAET 267 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~ 267 (447)
.... ...+.|+.++.+++++|++.++ +||++|+..+|+.... .+...|+.+|..+|.
T Consensus 82 ~~~~--------~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~--------------~~~~~y~~sK~~~e~ 139 (299)
T 2wm3_A 82 YWES--------CSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAG--------------RLAAAHFDGKGEVEE 139 (299)
T ss_dssp HHHH--------TCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTT--------------SCCCHHHHHHHHHHH
T ss_pred CCcc--------ccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCCC--------------cccCchhhHHHHHHH
Confidence 4210 1245788999999999999998 9999888777753211 123679999999999
Q ss_pred HHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHH-hCCCeE-EecCCCeeEccccHHHHHHHHHHHHcCC--
Q 013226 268 LTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQAL-RKEPLT-VYGDGKQTRSFQFVSDLVEGLIRLMEGD-- 343 (447)
Q Consensus 268 ~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~i~v~D~a~ai~~~l~~~-- 343 (447)
++++ .+++++++||+.+||+... .++.... .+.... .++.++...+|++++|+|++++.++.++
T Consensus 140 ~~~~----~gi~~~ilrp~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~ 207 (299)
T 2wm3_A 140 YFRD----IGVPMTSVRLPCYFENLLS--------HFLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEK 207 (299)
T ss_dssp HHHH----HTCCEEEEECCEEGGGGGT--------TTCCEECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHH
T ss_pred HHHH----CCCCEEEEeecHHhhhchh--------hcCCcccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhh
Confidence 8865 5899999999999997421 0111111 222212 1234567789999999999999999874
Q ss_pred -CCCcEEecCCCccCHHHHHHHHHHHhCCCCcEE
Q 013226 344 -HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIE 376 (447)
Q Consensus 344 -~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~ 376 (447)
....|++++ +.+|+.|+++.+.+.+|.+..+.
T Consensus 208 ~~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~ 240 (299)
T 2wm3_A 208 YVGQNIGLST-CRHTAEEYAALLTKHTRKVVHDA 240 (299)
T ss_dssp HTTCEEECCS-EEECHHHHHHHHHHHHSSCEEEC
T ss_pred hCCeEEEeee-ccCCHHHHHHHHHHHHCCCceeE
Confidence 235899986 68999999999999999876543
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-26 Score=212.54 Aligned_cols=223 Identities=15% Similarity=0.155 Sum_probs=163.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih 185 (447)
.++|+|+||||+||||++++++|+++ |++|++++|+.... +.+ ..++.++.+|+.+. .+.++|+|||
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~-~~~-----~~~~~~~~~D~~d~~~~~~~~~~~d~vi~ 75 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK-EKI-----GGEADVFIGDITDADSINPAFQGIDALVI 75 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHH-HHT-----TCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCch-hhc-----CCCeeEEEecCCCHHHHHHHHcCCCEEEE
Confidence 35789999999999999999999999 89999999863221 111 23567888888774 3567999999
Q ss_pred eccCCCCCC----------c---ccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 186 LACPASPVH----------Y---KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 186 ~Ag~~~~~~----------~---~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
|||...... . .......+++|+.++.++++++++.++ +||++||.+++.. . .+
T Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~--------~-----~~ 142 (253)
T 1xq6_A 76 LTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP--------D-----HP 142 (253)
T ss_dssp CCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT--------T-----CG
T ss_pred eccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCC--------C-----Cc
Confidence 999653211 0 011234689999999999999999887 9999999886521 1 11
Q ss_pred CCC--CChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 252 IGV--RSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 252 ~~~--~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
..+ .+.|+.+|..+|.++++ .+++++++||+.+||+..... .+ ..+....++++ ..+++++
T Consensus 143 ~~~~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~--~~--------~~~~~~~~~~~---~~~~~~~ 205 (253)
T 1xq6_A 143 LNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVR--EL--------LVGKDDELLQT---DTKTVPR 205 (253)
T ss_dssp GGGGGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSS--CE--------EEESTTGGGGS---SCCEEEH
T ss_pred cccccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchh--hh--------hccCCcCCcCC---CCcEEcH
Confidence 111 14588899999988754 789999999999999864211 00 00111111111 2468999
Q ss_pred HHHHHHHHHHHcCCC--CCcEEecCCC---ccCHHHHHHHHHHHhCC
Q 013226 330 SDLVEGLIRLMEGDH--VGPFNLGNPG---EFTMLELAEVVQEIIDR 371 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~--~g~~~i~~~~---~~s~~el~~~i~~~~g~ 371 (447)
+|+|++++.+++++. .++||+++++ .+++.|+++.+.+.+|+
T Consensus 206 ~Dva~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 206 ADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp HHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred HHHHHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 999999999998764 3489999864 59999999999998875
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-25 Score=217.74 Aligned_cols=228 Identities=15% Similarity=0.177 Sum_probs=168.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc-cccccccCCCceEEEecc-cccc-----cccCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK-DNLIHHFGNPRFELIRHD-VVEP-----ILLEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~D-~~~~-----~~~~~d~Vih~ 186 (447)
.+|+|+|||||||||++++++|+++|++|++++|+..... ..+ ....+++++.+| +.++ ++.++|+||||
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l---~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL---QAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHH---HTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHH---hhcCCcEEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 3678999999999999999999999999999999654321 111 112367888999 7665 35689999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCcc--ccCCCCCCCCCCCcCCCCCCCCCCChHHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSE--VYGDPLQHPQAETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~--v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK 262 (447)
++... . +.|..+ .+++++|++.+ + +|||+||.. .|+. .+...|+.+|
T Consensus 81 a~~~~-----~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~-----------------~~~~~y~~sK 131 (352)
T 1xgk_A 81 TTSQA-----G------DEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP-----------------WPAVPMWAPK 131 (352)
T ss_dssp CCSTT-----S------CHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS-----------------CCCCTTTHHH
T ss_pred CCCCC-----c------HHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC-----------------CCCccHHHHH
Confidence 87421 1 257777 99999999999 7 999999986 3321 1126799999
Q ss_pred HHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCe--EEecCCCeeEccccH-HHHHHHHHHH
Q 013226 263 RTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPL--TVYGDGKQTRSFQFV-SDLVEGLIRL 339 (447)
Q Consensus 263 ~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~v-~D~a~ai~~~ 339 (447)
+.+|.++++ .+++++++||+ +||+........+ +.......+.. .++++++...+++|+ +|+|++++.+
T Consensus 132 ~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~ 203 (352)
T 1xgk_A 132 FTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPYPL---FQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQI 203 (352)
T ss_dssp HHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSCSS---CBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCEEEEecc-eecCCchhccccc---ccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHH
Confidence 999998866 48999999986 6887642111000 00001122232 345667788999999 8999999999
Q ss_pred HcCC----CCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCC
Q 013226 340 MEGD----HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382 (447)
Q Consensus 340 l~~~----~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~ 382 (447)
++++ ..++||+++ +.+|+.|+++.+.+.+|.+..+...|...
T Consensus 204 l~~~~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp~~~ 249 (352)
T 1xgk_A 204 FKDGPQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPKVE 249 (352)
T ss_dssp HHHCHHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSSCC
T ss_pred HhCCchhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECCHHH
Confidence 9875 356999995 78999999999999999987776666443
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-26 Score=216.50 Aligned_cols=238 Identities=16% Similarity=0.101 Sum_probs=164.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc------------cCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL------------LEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~------------~~~ 180 (447)
+++|+++||||+||||++++++|+++|++|++++|+.....+ +... ...++.++.+|+++... .++
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 80 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDD-LVAA-YPDRAEAISLDVTDGERIDVVAADVLARYGRV 80 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH-HHHH-CTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHh-ccCCceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence 467899999999999999999999999999999996443222 1111 13468899999987631 369
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHH----HHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTL----NMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~----~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
|+||||||......... +....+++|+.|+. .++..+++.+. +||++||...+. +
T Consensus 81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 144 (281)
T 3m1a_A 81 DVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL----------------S 144 (281)
T ss_dssp SEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------C
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC----------------C
Confidence 99999999754332222 34568999999954 44555566665 999999987542 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCC---chHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDG---RVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
..+.+.|+.||++.|.+++.++.+ .|+++++++||.+++|....... .....+........... .......
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 221 (281)
T 3m1a_A 145 FAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLV---QGSDGSQ 221 (281)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHH---HC-----
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHH---hhccCCC
Confidence 233478999999999999999877 69999999999998875331110 00111111111100000 1112346
Q ss_pred cccHHHHHHHHHHHHcCCCC-CcEEecCCCccCHHHHHHHHHHHhCC
Q 013226 326 FQFVSDLVEGLIRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEIIDR 371 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~~-g~~~i~~~~~~s~~el~~~i~~~~g~ 371 (447)
+.+++|+|++++.+++++.. +.|+++++....+.+....+.+.++.
T Consensus 222 ~~~~~dva~a~~~~~~~~~~~~~~~l~s~~~~~i~g~~~~i~~~~~~ 268 (281)
T 3m1a_A 222 PGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRAELTE 268 (281)
T ss_dssp CBCHHHHHHHHHHHHHSSSCCSEEEESHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCeEEecCchHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998765 48999887777777877777776643
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=202.08 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=150.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih 185 (447)
+++|+|+||||+||||++++++|+++|+ +|++++|+........ ..++.++.+|+.+. .+.++|+|||
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~d~vi~ 90 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVGFC 90 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEEEE
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc-----cCCceEEecCcCCHHHHHHHhcCCCEEEE
Confidence 4678999999999999999999999999 9999999754332211 12577888888764 3557999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRT 264 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~ 264 (447)
|||.... .......+++|+.++.++++++++.++ +||++||.++|+. +...|+.+|+.
T Consensus 91 ~ag~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~------------------~~~~Y~~sK~~ 149 (242)
T 2bka_A 91 CLGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQVKGE 149 (242)
T ss_dssp CCCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHH
T ss_pred CCCcccc---cCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC------------------CcchHHHHHHH
Confidence 9986422 123567889999999999999999887 9999999988752 12679999999
Q ss_pred HHHHHHHHHhhhCC-cEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 265 AETLTMDYHRGLGI-EARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 265 ~E~~~~~~~~~~~i-~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
+|.+++. .++ +++++|||.+|||.... .....+........+. .++ ...+++++|+|++++.+++++
T Consensus 150 ~e~~~~~----~~~~~~~~vrpg~v~~~~~~~---~~~~~~~~~~~~~~~~-~~~----~~~~~~~~dva~~~~~~~~~~ 217 (242)
T 2bka_A 150 VEAKVEE----LKFDRYSVFRPGVLLCDRQES---RPGEWLVRKFFGSLPD-SWA----SGHSVPVVTVVRAMLNNVVRP 217 (242)
T ss_dssp HHHHHHT----TCCSEEEEEECCEEECTTGGG---SHHHHHHHHHHCSCCT-TGG----GGTEEEHHHHHHHHHHHHTSC
T ss_pred HHHHHHh----cCCCCeEEEcCceecCCCCCC---cHHHHHHHHhhcccCc-ccc----CCcccCHHHHHHHHHHHHhCc
Confidence 9998765 477 59999999999996421 2223333333322221 111 135899999999999999987
Q ss_pred CC-CcEEec
Q 013226 344 HV-GPFNLG 351 (447)
Q Consensus 344 ~~-g~~~i~ 351 (447)
.. +.|++.
T Consensus 218 ~~~~~~~~~ 226 (242)
T 2bka_A 218 RDKQMELLE 226 (242)
T ss_dssp CCSSEEEEE
T ss_pred cccCeeEee
Confidence 66 555554
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=203.74 Aligned_cols=234 Identities=16% Similarity=0.160 Sum_probs=168.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEecccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPIL------------ 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~------------ 177 (447)
..+++|+|+||||+|+||++++++|+++|++|++++|+..... .+...+. ..++.++.+|+.+...
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 90 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQ-KVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKH 90 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHH-HHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3568899999999999999999999999999999998643211 1111111 2268899999987631
Q ss_pred cCCCEEEEeccCCCCC--Ccc----cChHHHHHHHHHHHHHHHHHHHHC----CC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 178 LEVDQIYHLACPASPV--HYK----FNPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~--~~~----~~~~~~~~~Nv~gt~~ll~aa~~~----g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
.++|+||||||..... .+. .+....+++|+.++.++++++.+. +. +||++||...|....
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~--------- 161 (278)
T 2bgk_A 91 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE--------- 161 (278)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT---------
T ss_pred CCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCC---------
Confidence 3699999999975421 111 234568999999999999988653 44 999999998764311
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
.+...|+.+|++.|.+++.++.+ .|++++++|||.++++......... ..+........+. ..
T Consensus 162 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~~~~~~~~~~~-------~~ 227 (278)
T 2bgk_A 162 ------GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVD-SSRVEELAHQAAN-------LK 227 (278)
T ss_dssp ------TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCC-HHHHHHHHHHTCS-------SC
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccc-hhHHHHhhhcccc-------cc
Confidence 12368999999999999999875 5899999999999998643211110 1222222221111 12
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCCccCHHHHHHHHHHH
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFTMLELAEVVQEI 368 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s~~el~~~i~~~ 368 (447)
..+++++|+|+++++++.++ ..| .|++.++..+++.|+++.+.+.
T Consensus 228 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 228 GTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHG 276 (278)
T ss_dssp SCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSC
T ss_pred cccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhh
Confidence 35899999999999999753 234 8899988899999999887653
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-25 Score=213.73 Aligned_cols=229 Identities=16% Similarity=0.218 Sum_probs=166.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc-cc--ccccCCCceEEEecccccc-----cccCCCEEEEe
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD-NL--IHHFGNPRFELIRHDVVEP-----ILLEVDQIYHL 186 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~-~~--~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 186 (447)
+|+|+|||||||||++++++|+++|++|++++|+...... .. ...+...++.++.+|+.++ ++.++|+|||+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 5789999999999999999999999999999997543211 11 0111234688899998764 45789999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC-CChHHHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKR 263 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~-~~~Y~~sK~ 263 (447)
|+..... .|+.++.+++++|++.| + |||+ | +||...... + .+..+ ...| .+|.
T Consensus 84 a~~~~~~-----------~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~~--~------~~~~p~~~~y-~sK~ 139 (313)
T 1qyd_A 84 LAGGVLS-----------HHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDIM--E------HALQPGSITF-IDKR 139 (313)
T ss_dssp CCCSSSS-----------TTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTSC--C------CCCSSTTHHH-HHHH
T ss_pred Cccccch-----------hhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCcccc--c------cCCCCCcchH-HHHH
Confidence 9864321 37788899999999998 7 7874 3 355322111 1 12222 3568 9999
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHH----HHhCCCeEEecCCCeeEccccHHHHHHHHHHH
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQ----ALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~ 339 (447)
.+|.++++ .+++++++||+.++|+... .+... ...++.+.++++++..++|++++|+|++++.+
T Consensus 140 ~~e~~~~~----~g~~~~ilrp~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~ 207 (313)
T 1qyd_A 140 KVRRAIEA----ASIPYTYVSSNMFAGYFAG--------SLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKS 207 (313)
T ss_dssp HHHHHHHH----TTCCBCEEECCEEHHHHTT--------TSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHh----cCCCeEEEEeceecccccc--------ccccccccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHH
Confidence 99988753 6899999999988874211 11110 12334455677788889999999999999999
Q ss_pred HcCCC--CCcEEecCC-CccCHHHHHHHHHHHhCCCCcEEecC
Q 013226 340 MEGDH--VGPFNLGNP-GEFTMLELAEVVQEIIDRNARIEFRP 379 (447)
Q Consensus 340 l~~~~--~g~~~i~~~-~~~s~~el~~~i~~~~g~~~~~~~~~ 379 (447)
++++. .+.|++.++ +.+|+.|+++.+.+.+|.+..+...|
T Consensus 208 l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 250 (313)
T 1qyd_A 208 IDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250 (313)
T ss_dssp TTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred HhCcccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence 98764 347888775 68999999999999999887654443
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-23 Score=185.16 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=145.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~ 189 (447)
+|+|+||||+|+||++++++|+++|++|++++|+....... ...++.++.+|+.+. .+.++|+|||+||.
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~ 77 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-----GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-----SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc-----cCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence 47899999999999999999999999999999965432211 134688899998775 35679999999996
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
.... ++ .++|+.++.++++++++.++ +||++||.++|+..... +. +...|+.+|..+|.+
T Consensus 78 ~~~~----~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----------~~-~~~~y~~~K~~~e~~ 138 (206)
T 1hdo_A 78 RNDL----SP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV-----------PP-RLQAVTDDHIRMHKV 138 (206)
T ss_dssp TTCC----SC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS-----------CG-GGHHHHHHHHHHHHH
T ss_pred CCCC----Cc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccc-----------cc-cchhHHHHHHHHHHH
Confidence 5431 11 23899999999999999887 99999999998753221 11 347899999999998
Q ss_pred HHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC--C
Q 013226 269 TMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV--G 346 (447)
Q Consensus 269 ~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~--g 346 (447)
++ +.+++++++||+.+ ++... ...+ .....+... .++++++|+|++++.+++++.. +
T Consensus 139 ~~----~~~i~~~~lrp~~~-~~~~~--~~~~-------------~~~~~~~~~-~~~i~~~Dva~~~~~~~~~~~~~g~ 197 (206)
T 1hdo_A 139 LR----ESGLKYVAVMPPHI-GDQPL--TGAY-------------TVTLDGRGP-SRVISKHDLGHFMLRCLTTDEYDGH 197 (206)
T ss_dssp HH----HTCSEEEEECCSEE-ECCCC--CSCC-------------EEESSSCSS-CSEEEHHHHHHHHHHTTSCSTTTTC
T ss_pred HH----hCCCCEEEEeCCcc-cCCCC--Ccce-------------EecccCCCC-CCccCHHHHHHHHHHHhcCcccccc
Confidence 84 36899999999997 33321 1111 011111000 4799999999999999988642 4
Q ss_pred cEEecCCC
Q 013226 347 PFNLGNPG 354 (447)
Q Consensus 347 ~~~i~~~~ 354 (447)
.|+++++.
T Consensus 198 ~~~i~~g~ 205 (206)
T 1hdo_A 198 STYPSHQY 205 (206)
T ss_dssp EEEEECCC
T ss_pred ceeeeccc
Confidence 89998764
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-25 Score=206.11 Aligned_cols=220 Identities=14% Similarity=0.054 Sum_probs=150.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cc----cCCCEEEEe
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----IL----LEVDQIYHL 186 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~----~~~d~Vih~ 186 (447)
|+|+||||+||||++++++|+++|++|++++|+...... .+.+|+.+. .+ .++|+||||
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------------~~~~D~~~~~~~~~~~~~~~~~~d~vi~~ 69 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA------------DLSTPGGRETAVAAVLDRCGGVLDGLVCC 69 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC------------CTTSHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc------------cccCCcccHHHHHHHHHHcCCCccEEEEC
Confidence 589999999999999999999999999999996432211 144555443 22 379999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC----CC-eEEEEeCccccCCCCCCC-CCCCcCC-CC--------CC
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHP-QAETYWG-NV--------NP 251 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g~-r~v~~SS~~v~g~~~~~~-~~e~~~~-~~--------~~ 251 (447)
||.... ..+....+++|+.++.++++++.+. +. +||++||..+|+.....+ ..|..+. +. .+
T Consensus 70 Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (255)
T 2dkn_A 70 AGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQ 146 (255)
T ss_dssp CCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhcccc
Confidence 996542 2457789999999999999987654 44 999999999886432111 1110000 00 00
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
..+.+.|+.+|++.|.+++.++.+ .+++++++|||.++||.. ..++.....+.....+. + ....+++
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~--------~~~~~~~~~~~~~~~~~-~-~~~~~~~ 216 (255)
T 2dkn_A 147 GQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLL--------QASKADPRYGESTRRFV-A-PLGRGSE 216 (255)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHH--------HHHHHCTTTHHHHHSCC-C-TTSSCBC
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhh--------hhcccchhhHHHHHHHH-H-HhcCCCC
Confidence 123478999999999999998876 599999999999998742 11111000000000000 1 2346899
Q ss_pred HHHHHHHHHHHHcCC---CCC-cEEecCCCccCHHH
Q 013226 329 VSDLVEGLIRLMEGD---HVG-PFNLGNPGEFTMLE 360 (447)
Q Consensus 329 v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s~~e 360 (447)
++|+|++++.+++++ ..| .|++.++..++++|
T Consensus 217 ~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 217 PREVAEAIAFLLGPQASFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccceeeEEEecCCeEeeeec
Confidence 999999999999865 234 89998887666544
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-24 Score=207.61 Aligned_cols=223 Identities=19% Similarity=0.249 Sum_probs=164.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag~ 189 (447)
+++|+||||||+||++++++|+++|++|++++|+.....+.+. .+...+++++.+|+.+. ++.++|+|||+|+.
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~-~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~ 89 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLD-EFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF 89 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHH-HHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHH-HhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence 3589999999999999999999999999999997542211111 11124678899998774 45789999999984
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC-CChHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGKRTAE 266 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~-~~~Y~~sK~~~E 266 (447)
. ++.++.+++++|++.+ + +||+ | +||... +|. .+..+ ...| .+|..+|
T Consensus 90 ~---------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~-----~~~~p~~~~y-~sK~~~e 140 (318)
T 2r6j_A 90 P---------------QILDQFKILEAIKVAGNIKRFLP-S---DFGVEE----DRI-----NALPPFEALI-ERKRMIR 140 (318)
T ss_dssp G---------------GSTTHHHHHHHHHHHCCCCEEEC-S---CCSSCT----TTC-----CCCHHHHHHH-HHHHHHH
T ss_pred h---------------hhHHHHHHHHHHHhcCCCCEEEe-e---ccccCc----ccc-----cCCCCcchhH-HHHHHHH
Confidence 2 1456789999999998 7 7774 3 354321 111 12222 2468 9999999
Q ss_pred HHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC--
Q 013226 267 TLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH-- 344 (447)
Q Consensus 267 ~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~-- 344 (447)
.++++ .+++++++||+.+++. ++..++.....++.+.++++++..++|++++|+|++++.+++++.
T Consensus 141 ~~~~~----~~~~~~~lr~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~ 208 (318)
T 2r6j_A 141 RAIEE----ANIPYTYVSANCFASY--------FINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRAL 208 (318)
T ss_dssp HHHHH----TTCCBEEEECCEEHHH--------HHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTCGGGT
T ss_pred HHHHh----cCCCeEEEEcceehhh--------hhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhcCcccc
Confidence 88754 6899999999877752 223333333345566777888888999999999999999998764
Q ss_pred CCcEEecCC-CccCHHHHHHHHHHHhCCCCcEEecC
Q 013226 345 VGPFNLGNP-GEFTMLELAEVVQEIIDRNARIEFRP 379 (447)
Q Consensus 345 ~g~~~i~~~-~~~s~~el~~~i~~~~g~~~~~~~~~ 379 (447)
.+.|++.++ +.+|+.|+++.+.+.+|.+..+...|
T Consensus 209 ~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (318)
T 2r6j_A 209 NRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244 (318)
T ss_dssp TEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred CeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence 347888764 78999999999999999987765544
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=206.37 Aligned_cols=224 Identities=16% Similarity=0.238 Sum_probs=162.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC-CCCc--ccc--ccccCCCceEEEecccccc-----cccCCCEEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF-TGKK--DNL--IHHFGNPRFELIRHDVVEP-----ILLEVDQIY 184 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~-~~~~--~~~--~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vi 184 (447)
+|+|+||||||+||++++++|+++|++|++++|+. .... +.. ...+...++.++.+|+.+. ++.++|+||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 57899999999999999999999999999999975 1111 110 0011124678899998765 456899999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC-CChHHHH
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEG 261 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~-~~~Y~~s 261 (447)
|+|+... +.++.+++++|++.| + +||+ | +||... +|. .+..| .+.| .+
T Consensus 82 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~-----~~~~p~~~~y-~s 132 (307)
T 2gas_A 82 CAAGRLL---------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLDV----DRH-----DAVEPVRQVF-EE 132 (307)
T ss_dssp ECSSSSC---------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSCT----TSC-----CCCTTHHHHH-HH
T ss_pred ECCcccc---------------cccHHHHHHHHHhcCCceEEee-c---ccccCc----ccc-----cCCCcchhHH-HH
Confidence 9998532 456789999999998 7 7773 3 354321 121 12222 3578 99
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHH---HHhCCCeEEecCCCeeEccccHHHHHHHHHH
Q 013226 262 KRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQ---ALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338 (447)
Q Consensus 262 K~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~ 338 (447)
|..+|.++++ .+++++++||+.++++... .+... ....+.+.++++++..+++++++|+|++++.
T Consensus 133 K~~~e~~~~~----~~i~~~~lrp~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~ 200 (307)
T 2gas_A 133 KASIRRVIEA----EGVPYTYLCCHAFTGYFLR--------NLAQLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIR 200 (307)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEETTTTGG--------GTTCTTCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEcceeeccccc--------cccccccccCCCCeEEEecCCCcceEEeeHHHHHHHHHH
Confidence 9999988754 5899999999998876421 11110 1133456677788888999999999999999
Q ss_pred HHcCCC--CCcEEecCC-CccCHHHHHHHHHHHhCCCCcEEecC
Q 013226 339 LMEGDH--VGPFNLGNP-GEFTMLELAEVVQEIIDRNARIEFRP 379 (447)
Q Consensus 339 ~l~~~~--~g~~~i~~~-~~~s~~el~~~i~~~~g~~~~~~~~~ 379 (447)
+++++. .+.|++.++ +.+|+.|+++.+.+.+|.+..+...|
T Consensus 201 ~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (307)
T 2gas_A 201 AANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS 244 (307)
T ss_dssp HHTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEEC
T ss_pred HHcCccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecC
Confidence 998764 347888765 68999999999999999887766543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=209.25 Aligned_cols=225 Identities=16% Similarity=0.223 Sum_probs=164.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC-CCCcc-cc--ccccCCCceEEEecccccc-----cccCCCEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF-TGKKD-NL--IHHFGNPRFELIRHDVVEP-----ILLEVDQIY 184 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~-~~~~~-~~--~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vi 184 (447)
++|+|+||||||+||++++++|+++|++|++++|+. ..... .. ...+...++.++.+|+.+. ++.++|+||
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 357899999999999999999999999999999975 21111 10 0011124678899998765 457899999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC-CChHHHH
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEG 261 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~-~~~Y~~s 261 (447)
|+|+... +.++.+++++|++.| + +||+ | +||... +|+ .+..+ .+.| .+
T Consensus 83 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~-----~~~~p~~~~y-~s 133 (321)
T 3c1o_A 83 SALPFPM---------------ISSQIHIINAIKAAGNIKRFLP-S---DFGCEE----DRI-----KPLPPFESVL-EK 133 (321)
T ss_dssp ECCCGGG---------------SGGGHHHHHHHHHHCCCCEEEC-S---CCSSCG----GGC-----CCCHHHHHHH-HH
T ss_pred ECCCccc---------------hhhHHHHHHHHHHhCCccEEec-c---ccccCc----ccc-----ccCCCcchHH-HH
Confidence 9998421 556789999999998 7 7772 3 354321 121 12222 3579 99
Q ss_pred HHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHH---HHHhCCCeEEecCCCeeEccccHHHHHHHHHH
Q 013226 262 KRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVA---QALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338 (447)
Q Consensus 262 K~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~ 338 (447)
|..+|.++++ .+++++++||+.++++. +..+.. ....++.+..+++++..+++++++|+|++++.
T Consensus 134 K~~~e~~~~~----~~~~~~~lrp~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~ 201 (321)
T 3c1o_A 134 KRIIRRAIEA----AALPYTYVSANCFGAYF--------VNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIK 201 (321)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEEHHHH--------HHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEeceecccc--------ccccccccccccccCceEEecCCCcceeEeeHHHHHHHHHH
Confidence 9999988854 58999999998888642 222221 11244567778888888999999999999999
Q ss_pred HHcCCC--CCcEEecCC-CccCHHHHHHHHHHHhCCCCcEEecC
Q 013226 339 LMEGDH--VGPFNLGNP-GEFTMLELAEVVQEIIDRNARIEFRP 379 (447)
Q Consensus 339 ~l~~~~--~g~~~i~~~-~~~s~~el~~~i~~~~g~~~~~~~~~ 379 (447)
++.++. .+.|+++++ +.+|+.|+++.+.+.+|.+..+...+
T Consensus 202 ~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~ 245 (321)
T 3c1o_A 202 VACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245 (321)
T ss_dssp HHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEEC
T ss_pred HHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCC
Confidence 998764 247888764 78999999999999999987766544
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-24 Score=198.25 Aligned_cols=218 Identities=15% Similarity=0.158 Sum_probs=159.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc-----c-------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI-----L------- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~------- 177 (447)
++++|+|+||||+|+||++++++|+++|++|++++|+.+... .+...+ ...++.++.+|+.+.. +
T Consensus 8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 86 (255)
T 1fmc_A 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN-HVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999998643211 111111 1246788899997753 1
Q ss_pred cCCCEEEEeccCCCCCCccc---ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF---NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~---~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
.++|+||||||......++. +....+++|+.++.++++++. +.+. +||++||...+..
T Consensus 87 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~-------------- 152 (255)
T 1fmc_A 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENK-------------- 152 (255)
T ss_dssp SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC--------------
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCC--------------
Confidence 27999999999765433322 245689999999999998874 4455 9999999887632
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
..+...|+.+|++.|.+++.++.+. +++++++|||.++++..... ....+......+.++ ..+
T Consensus 153 --~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~~~---------~~~ 218 (255)
T 1fmc_A 153 --NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV---ITPEIEQKMLQHTPI---------RRL 218 (255)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CCHHHHHHHHHTCSS---------CSC
T ss_pred --CCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhc---cChHHHHHHHhcCCc---------ccC
Confidence 1234789999999999999998765 89999999999998743211 112333344443322 247
Q ss_pred ccHHHHHHHHHHHHcCC---CCC-cEEecCCCccCH
Q 013226 327 QFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFTM 358 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s~ 358 (447)
.+++|+|++++.++.++ ..| .|++.++..+|+
T Consensus 219 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 219 GQPQDIANAALFLCSPAASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred CCHHHHHHHHHHHhCCccccCCCcEEEECCceeccC
Confidence 89999999999999754 234 899998887764
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=195.11 Aligned_cols=214 Identities=17% Similarity=0.122 Sum_probs=153.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQI 183 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~V 183 (447)
++++|+|+||||+|+||++++++|+++|++|++++|+..... ..... ...++++.+|+.+.. +.++|+|
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV-SLAKE--CPGIEPVCVDLGDWDATEKALGGIGPVDLL 80 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHH--STTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHh--ccCCCcEEecCCCHHHHHHHHHHcCCCCEE
Confidence 467899999999999999999999999999999998643211 11111 124667788987753 2358999
Q ss_pred EEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----C-C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 184 YHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----G-A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 184 ih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
|||||......+.. +....+++|+.|+.++++++.+. + . +||++||...+.. ..
T Consensus 81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~~ 144 (244)
T 1cyd_A 81 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT----------------FP 144 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC----------------CT
T ss_pred EECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCC----------------CC
Confidence 99999765333222 24568999999999998887553 4 3 9999999887642 11
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
+...|+.+|++.|.+++.++.+ .+++++++|||.++++...... ....++.....+.+ ...+++++
T Consensus 145 ~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~ 213 (244)
T 1cyd_A 145 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS--ADPEFARKLKERHP---------LRKFAEVE 213 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT--CCHHHHHHHHHHST---------TSSCBCHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccc--cCHHHHHHHHhcCC---------ccCCCCHH
Confidence 2368999999999999999876 5899999999999987531000 00223233333222 24689999
Q ss_pred HHHHHHHHHHcCCC---CC-cEEecCCCc
Q 013226 331 DLVEGLIRLMEGDH---VG-PFNLGNPGE 355 (447)
Q Consensus 331 D~a~ai~~~l~~~~---~g-~~~i~~~~~ 355 (447)
|+|++++.+++++. .| .+++.++..
T Consensus 214 dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 214 DVVNSILFLLSDRSASTSGGGILVDAGYL 242 (244)
T ss_dssp HHHHHHHHHHSGGGTTCCSSEEEESTTGG
T ss_pred HHHHHHHHHhCchhhcccCCEEEECCCcc
Confidence 99999999997642 34 677766543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=199.85 Aligned_cols=236 Identities=17% Similarity=0.123 Sum_probs=169.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---ccccc-CCCceEEEeccccccc----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIHHF-GNPRFELIRHDVVEPI---------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~~~-~~~~v~~~~~D~~~~~---------- 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+. +.... ...++.++.+|++++.
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 86 (281)
T 3svt_A 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVT 86 (281)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999864432211 11110 1126889999998763
Q ss_pred --ccCCCEEEEeccCCCC-CCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCC
Q 013226 177 --LLEVDQIYHLACPASP-VHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~-~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+.++|+||||||.... ..... +....+++|+.|+.++++++.+ .+. +||++||...+..
T Consensus 87 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 157 (281)
T 3svt_A 87 AWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNT--------- 157 (281)
T ss_dssp HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSC---------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCC---------
Confidence 2369999999997322 22222 2456899999999999987654 333 9999999886532
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
......|+.||++.+.+++.++.++ ++++++++||.++++....... ...+........++
T Consensus 158 -------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~--~~~~~~~~~~~~p~------- 221 (281)
T 3svt_A 158 -------HRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITE--SAELSSDYAMCTPL------- 221 (281)
T ss_dssp -------CTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT--CHHHHHHHHHHCSS-------
T ss_pred -------CCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhccc--CHHHHHHHHhcCCC-------
Confidence 2234789999999999999998765 6999999999999875311000 01122222222222
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCccC-HHHHHHHHHHHhCCCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFT-MLELAEVVQEIIDRNA 373 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s-~~el~~~i~~~~g~~~ 373 (447)
..+.+++|+|+++++++.+.. .| .+++.+|..++ ..|+.+.+.+.++.+.
T Consensus 222 --~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~ 276 (281)
T 3svt_A 222 --PRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA 276 (281)
T ss_dssp --SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred --CCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence 246789999999999997542 34 88888887776 7889999999988654
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=192.17 Aligned_cols=213 Identities=16% Similarity=0.094 Sum_probs=155.8
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+. .... ..++.++.+|+++.. +.
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~-~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGA-AASV-GRGAVHHVVDLTNEVSVRALIDFTIDTFG 84 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHH-HHHH-CTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHHh-CCCeEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 457889999999999999999999999999999999975432222 1122 346788889997763 23
Q ss_pred CCCEEEEeccCCCCC--Cc----ccChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 179 EVDQIYHLACPASPV--HY----KFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
++|+||||||..... .. .+.....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~------------- 151 (271)
T 3tzq_B 85 RLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA------------- 151 (271)
T ss_dssp CCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-------------
T ss_pred CCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC-------------
Confidence 699999999976331 11 1224568999999999999988 55665 999999987652
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.||++.+.+++.++.+ +|+++++|+||.+++|.... .....+........+. .
T Consensus 152 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~---------~ 216 (271)
T 3tzq_B 152 ---AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEV---GLPQPIVDIFATHHLA---------G 216 (271)
T ss_dssp ---BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC------CHHHHHHHHTTSTT---------S
T ss_pred ---CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccc---cCCHHHHHHHHhcCCC---------C
Confidence 2223478999999999999999877 68999999999999986431 1112233333332221 2
Q ss_pred ccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.+..++|+|+++++++.+.. .| .+++.+|
T Consensus 217 r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 217 RIGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 36789999999999997642 35 7777666
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=196.86 Aligned_cols=223 Identities=18% Similarity=0.145 Sum_probs=157.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|++|||||+|+||++++++|+++|++|++++|+.....+ ..... ..++.++.+|+.++. +.+
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 82 (259)
T 4e6p_A 5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQ-AAAEI-GPAAYAVQMDVTRQDSIDAAIAATVEHAGG 82 (259)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHH-CTTEEEEECCTTCHHHHHHHHHHHHHHSSS
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-CCCceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999999999999986433222 11111 235788999998763 137
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----C--CeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----G--ARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+|+||||||......... +....+++|+.|+.++++++.+. + .+||++||...+..
T Consensus 83 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 148 (259)
T 4e6p_A 83 LDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRG-------------- 148 (259)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC--------------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccC--------------
Confidence 999999999865443332 34567899999999999887542 2 39999999876421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhC---CCeEEecCCCee
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRK---EPLTVYGDGKQT 323 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 323 (447)
......|+.||++.+.+++.++.++ |+++++|+||.+++|... ....++...... +....+.+....
T Consensus 149 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~ 221 (259)
T 4e6p_A 149 --EALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWD-----GVDALFARYENRPRGEKKRLVGEAVPF 221 (259)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHH-----HHHHHHHHHHTCCTTHHHHHHHHHSTT
T ss_pred --CCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhh-----hhhhhhhhhccCChHHHHHHHhccCCC
Confidence 2223789999999999999998765 899999999999998531 111111111111 001111111223
Q ss_pred EccccHHHHHHHHHHHHcCCC---CC-cEEecCCCccC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFT 357 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s 357 (447)
..+.+++|+|+++++++.... .| +|++.+|..+|
T Consensus 222 ~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 222 GRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp SSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred CCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcChhcC
Confidence 468899999999999987542 34 88988876553
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=196.64 Aligned_cols=231 Identities=12% Similarity=0.040 Sum_probs=151.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-----CCCceEEEeccccccc-----c-----
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-----GNPRFELIRHDVVEPI-----L----- 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~~-----~----- 177 (447)
+++|+++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.++. +
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLE-ETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999998643211 111111 1236788999998763 1
Q ss_pred --cCCCEEEEeccCCCCCCc--------ccChHHHHHHHHHHHHHHHHHHHHC----CCeEEEEeCccc-cCCCCCCCCC
Q 013226 178 --LEVDQIYHLACPASPVHY--------KFNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEV-YGDPLQHPQA 242 (447)
Q Consensus 178 --~~~d~Vih~Ag~~~~~~~--------~~~~~~~~~~Nv~gt~~ll~aa~~~----g~r~v~~SS~~v-~g~~~~~~~~ 242 (447)
.++|+||||||....... ..+....+++|+.|+.++++++.+. +.+||++||... +..
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------- 155 (278)
T 1spx_A 83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHA------- 155 (278)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSC-------
T ss_pred HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEecccccccC-------
Confidence 279999999997543221 1234568999999999999887653 469999999875 431
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC---CCch--HHHHHHHHHhCCCe
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID---DGRV--VSNFVAQALRKEPL 314 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~---~~~~--~~~~~~~~~~~~~~ 314 (447)
......|+.||++.+.+++.++.+ .|+++++|+||.++++..... .... +...........+
T Consensus 156 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 225 (278)
T 1spx_A 156 ---------TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVP- 225 (278)
T ss_dssp ---------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCT-
T ss_pred ---------CCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCC-
Confidence 122368999999999999998865 589999999999998853211 0000 0000112211111
Q ss_pred EEecCCCeeEccccHHHHHHHHHHHHcCC----CCC-cEEecCCCccCHHHHHHHHHHHh
Q 013226 315 TVYGDGKQTRSFQFVSDLVEGLIRLMEGD----HVG-PFNLGNPGEFTMLELAEVVQEII 369 (447)
Q Consensus 315 ~~~~~~~~~~~~i~v~D~a~ai~~~l~~~----~~g-~~~i~~~~~~s~~el~~~i~~~~ 369 (447)
...+.+++|+|+++++++..+ ..| .+++.++..+++.|+++.+.+.+
T Consensus 226 --------~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 226 --------AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp --------TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC------------
T ss_pred --------CcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 123789999999999998753 335 78888888999999999988754
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-24 Score=205.90 Aligned_cols=227 Identities=18% Similarity=0.294 Sum_probs=163.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCC--cccc--ccccCCCceEEEecccccc-----cccCCCEEEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGK--KDNL--IHHFGNPRFELIRHDVVEP-----ILLEVDQIYH 185 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~--~~~~--~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih 185 (447)
+|+|+||||||+||+++++.|+++|++|++++|+.... .+.. ...+...+++++.+|+.+. ++.++|+|||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 57899999999999999999999999999999975432 1111 0111234688899998775 4568999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC-CChHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV-RSCYDEGK 262 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~-~~~Y~~sK 262 (447)
+|+.. ++.++.+++++|+++| + +||+ |+ ||... +|. .+..+ ...| .+|
T Consensus 84 ~a~~~---------------~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~~----~~~-----~~~~p~~~~y-~sK 134 (308)
T 1qyc_A 84 TVGSL---------------QIESQVNIIKAIKEVGTVKRFFP-SE---FGNDV----DNV-----HAVEPAKSVF-EVK 134 (308)
T ss_dssp CCCGG---------------GSGGGHHHHHHHHHHCCCSEEEC-SC---CSSCT----TSC-----CCCTTHHHHH-HHH
T ss_pred CCcch---------------hhhhHHHHHHHHHhcCCCceEee-cc---cccCc----ccc-----ccCCcchhHH-HHH
Confidence 99842 1456789999999998 7 7773 43 44211 121 12222 2568 999
Q ss_pred HHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcC
Q 013226 263 RTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 263 ~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
..+|.++++ .+++++++||+.++|+.... +.. .......++.+.++++++..++|++++|+|++++.++++
T Consensus 135 ~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~ 205 (308)
T 1qyc_A 135 AKVRRAIEA----EGIPYTYVSSNCFAGYFLRS----LAQ-AGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDD 205 (308)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEEHHHHTTT----TTC-TTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSC
T ss_pred HHHHHHHHh----cCCCeEEEEeceeccccccc----ccc-ccccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhC
Confidence 999988754 58999999999988743210 000 000012344567778888899999999999999999987
Q ss_pred CC--CCcEEecCC-CccCHHHHHHHHHHHhCCCCcEEecC
Q 013226 343 DH--VGPFNLGNP-GEFTMLELAEVVQEIIDRNARIEFRP 379 (447)
Q Consensus 343 ~~--~g~~~i~~~-~~~s~~el~~~i~~~~g~~~~~~~~~ 379 (447)
+. .+.|++.++ +.+|+.|+++.+.+.+|.+..+...|
T Consensus 206 ~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 245 (308)
T 1qyc_A 206 PRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245 (308)
T ss_dssp GGGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred ccccCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCC
Confidence 64 347888765 68999999999999999887765543
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-22 Score=186.94 Aligned_cols=207 Identities=14% Similarity=0.144 Sum_probs=154.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|++|||||+|+||++++++|+++|++|++++|+..... ..++.++.+|++++. +.+
T Consensus 25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 96 (260)
T 3un1_A 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA--------DPDIHTVAGDISKPETADRIVREGIERFGR 96 (260)
T ss_dssp HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS--------STTEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc--------cCceEEEEccCCCHHHHHHHHHHHHHHCCC
Confidence 467899999999999999999999999999999999643321 236888999998763 137
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||......+.. +....+++|+.|+.++++++ ++.+. +||++||...+.. .
T Consensus 97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~--------------~ 162 (260)
T 3un1_A 97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQP--------------M 162 (260)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSC--------------B
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccC--------------C
Confidence 999999999865443322 24568899999999999887 45555 9999999876432 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
+..+...|+.||++.+.+++.++.++ |+++++|+||.+++|... ... ........+ ...+.
T Consensus 163 ~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~---~~~----~~~~~~~~p---------~~r~~ 226 (260)
T 3un1_A 163 VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHP---AET----HSTLAGLHP---------VGRMG 226 (260)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSC---GGG----HHHHHTTST---------TSSCB
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCC---HHH----HHHHhccCC---------CCCCc
Confidence 22234789999999999999999876 899999999999998642 111 111222211 23467
Q ss_pred cHHHHHHHHHHHHcCCC-CC-cEEecCCCcc
Q 013226 328 FVSDLVEGLIRLMEGDH-VG-PFNLGNPGEF 356 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~-~g-~~~i~~~~~~ 356 (447)
+++|+|++++++.+... .| ++++.+|...
T Consensus 227 ~~~dva~av~~L~~~~~itG~~i~vdGG~~~ 257 (260)
T 3un1_A 227 EIRDVVDAVLYLEHAGFITGEILHVDGGQNA 257 (260)
T ss_dssp CHHHHHHHHHHHHHCTTCCSCEEEESTTGGG
T ss_pred CHHHHHHHHHHhcccCCCCCcEEEECCCeec
Confidence 89999999999965542 34 7888776544
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=187.30 Aligned_cols=215 Identities=18% Similarity=0.162 Sum_probs=149.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+... .. ..++.++.+|+++.. +.+
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAA-EL-GAAVRFRNADVTNEADATAALAFAKQEFGH 81 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH-Hh-CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999999999999997554332222 11 246788999998763 237
Q ss_pred CCEEEEeccCCCCCCc--------ccChHHHHHHHHHHHHHHHHHHHHC----------CC-eEEEEeCccccCCCCCCC
Q 013226 180 VDQIYHLACPASPVHY--------KFNPVKTIKTNVVGTLNMLGLAKRV----------GA-RFLLTSTSEVYGDPLQHP 240 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~--------~~~~~~~~~~Nv~gt~~ll~aa~~~----------g~-r~v~~SS~~v~g~~~~~~ 240 (447)
+|+||||||....... .++....+++|+.|+.++++++.+. +. +||++||...+..
T Consensus 82 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~----- 156 (257)
T 3tpc_A 82 VHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDG----- 156 (257)
T ss_dssp CCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC-----
T ss_pred CCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccC-----
Confidence 9999999997654322 1235568999999999999988653 33 8999999885522
Q ss_pred CCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEe
Q 013226 241 QAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY 317 (447)
Q Consensus 241 ~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (447)
......|+.||++.+.+++.++.+ .|+++++++||.|.++.... +...........
T Consensus 157 -----------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~------ 215 (257)
T 3tpc_A 157 -----------QIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAG----MPQDVQDALAAS------ 215 (257)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC------------------CC------
T ss_pred -----------CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhcc----CCHHHHHHHHhc------
Confidence 112378999999999999999876 68999999999999875311 111111111111
Q ss_pred cCCCee-EccccHHHHHHHHHHHHcCCC-CC-cEEecCCCccC
Q 013226 318 GDGKQT-RSFQFVSDLVEGLIRLMEGDH-VG-PFNLGNPGEFT 357 (447)
Q Consensus 318 ~~~~~~-~~~i~v~D~a~ai~~~l~~~~-~g-~~~i~~~~~~s 357 (447)
... ..+.+++|+|+++++++++.. .| .+++.+|..++
T Consensus 216 ---~p~~~r~~~~~dva~~v~~l~s~~~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 216 ---VPFPPRLGRAEEYAALVKHICENTMLNGEVIRLDGALRMA 255 (257)
T ss_dssp ---SSSSCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTCCC-
T ss_pred ---CCCCCCCCCHHHHHHHHHHHcccCCcCCcEEEECCCccCC
Confidence 111 347899999999999998643 34 77777665543
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-23 Score=199.34 Aligned_cols=233 Identities=12% Similarity=0.053 Sum_probs=164.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC---CCceEEEeccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG---NPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~----------- 176 (447)
..+++|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+. ..++.++.+|+.+..
T Consensus 22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKA-TAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999986432111 111110 246889999998763
Q ss_pred -ccCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH-----CCC-eEEEEeCccccCCCCCCCCCCCc
Q 013226 177 -LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR-----VGA-RFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~-----~g~-r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+.++|+||||||........ .+....+++|+.|+.++++++.+ .+. +||++||...+..
T Consensus 101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~---------- 170 (302)
T 1w6u_A 101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG---------- 170 (302)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC----------
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccC----------
Confidence 23589999999975432222 23556899999999999887743 233 9999999876532
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC-CCchHHHHHHHHHhCCCeEEecCCC
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID-DGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
..+...|+.+|++.|.+++.++.+ .|++++++|||.++++..... .... ..........+.
T Consensus 171 ------~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~--~~~~~~~~~~p~------- 235 (302)
T 1w6u_A 171 ------SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTG--TFEKEMIGRIPC------- 235 (302)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTS--HHHHHHHTTCTT-------
T ss_pred ------CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccch--hhHHHHHhcCCc-------
Confidence 122378999999999999999877 689999999999999743211 0110 111122222211
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCccCHHHHHHHHHHHhCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFTMLELAEVVQEIIDR 371 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s~~el~~~i~~~~g~ 371 (447)
..+++++|+|++++.++.... .| .|++.++..+++.|+++.+.+..|.
T Consensus 236 --~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 236 --GRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp --SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCCHH
T ss_pred --CCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhccc
Confidence 247899999999999987532 34 8899888888888888777766543
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=191.75 Aligned_cols=220 Identities=17% Similarity=0.068 Sum_probs=149.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC---------CCceEEEecccccccc-----
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG---------NPRFELIRHDVVEPIL----- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~---------~~~v~~~~~D~~~~~~----- 177 (447)
.+++|+|+||||+|+||++++++|+++|++|++++|+..... .+...+. ..++.++.+|+.+...
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 82 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQ-ETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL 82 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence 457889999999999999999999999999999998643221 1111111 1467889999987531
Q ss_pred -------cCC-CEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC----C-C-eEEEEeCccccCCCCCC
Q 013226 178 -------LEV-DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----G-A-RFLLTSTSEVYGDPLQH 239 (447)
Q Consensus 178 -------~~~-d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~----g-~-r~v~~SS~~v~g~~~~~ 239 (447)
.++ |+||||||........ .+....+++|+.|+.++++++.+. + . +||++||...+..
T Consensus 83 ~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~---- 158 (264)
T 2pd6_A 83 EQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVG---- 158 (264)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHC----
T ss_pred HHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccC----
Confidence 245 9999999976543222 235568999999999999987653 4 3 9999999864321
Q ss_pred CCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEE
Q 013226 240 PQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTV 316 (447)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (447)
..+...|+.+|++.+.+++.++.+ .|++++++|||.+++|.... +...+........
T Consensus 159 ------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~---- 218 (264)
T 2pd6_A 159 ------------NVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK----VPQKVVDKITEMI---- 218 (264)
T ss_dssp ------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC--------------CTGGGC----
T ss_pred ------------CCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhh----cCHHHHHHHHHhC----
Confidence 112378999999999999999876 69999999999999986321 1111111111111
Q ss_pred ecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCccCHHHH
Q 013226 317 YGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFTMLEL 361 (447)
Q Consensus 317 ~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s~~el 361 (447)
....+.+++|+|++++.++.++ ..| .+++.++..+++..+
T Consensus 219 -----~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~ 262 (264)
T 2pd6_A 219 -----PMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLFMAENLY 262 (264)
T ss_dssp -----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC-------
T ss_pred -----CCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCceeccccC
Confidence 1124789999999999999753 234 788887766665544
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=188.94 Aligned_cols=220 Identities=11% Similarity=0.052 Sum_probs=154.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC---CCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG---NPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... .....+. ..++.++.+|+.++.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLH-EAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSS 82 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998643211 1111110 236788999998763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||......... +....+++|+.++.++++++. +.+. +||++||...+..
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 150 (263)
T 3ai3_A 83 FGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQP------------ 150 (263)
T ss_dssp HSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC------------
Confidence 136999999999764433222 245688999999999888864 3455 9999999987642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCc-------hHHHHHHHHHhC-CCeEE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGR-------VVSNFVAQALRK-EPLTV 316 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~-------~~~~~~~~~~~~-~~~~~ 316 (447)
......|+.||++.+.+++.++.+ .|+++++|+||.+++|........ ....+....... .
T Consensus 151 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 222 (263)
T 3ai3_A 151 ----LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHA---- 222 (263)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHC----
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcCC----
Confidence 112368999999999999999876 589999999999998742100000 001111111111 1
Q ss_pred ecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCccC
Q 013226 317 YGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFT 357 (447)
Q Consensus 317 ~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s 357 (447)
....+.+++|+|+++++++..+. .| .|++.++..++
T Consensus 223 -----p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 223 -----PIKRFASPEELANFFVFLCSERATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp -----TTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTCCCC
T ss_pred -----CCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECCCcccc
Confidence 11347899999999999997642 34 78888776554
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-22 Score=185.20 Aligned_cols=212 Identities=18% Similarity=0.142 Sum_probs=152.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQI 183 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~V 183 (447)
.+++|+|+||||+|+||++++++|+++|++|++++|+.... +.+.... ..++++.+|+.+.. +.++|+|
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~-~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADL-DSLVREC--PGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHS--TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHc--CCCCEEEEeCCCHHHHHHHHHHcCCCCEE
Confidence 46789999999999999999999999999999999864321 1111111 24567788987753 2358999
Q ss_pred EEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----C-C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 184 YHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----G-A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 184 ih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
|||||......... .....+++|+.++.++++++.+. + . +||++||...+.. ..
T Consensus 81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------~~ 144 (244)
T 3d3w_A 81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA----------------VT 144 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC----------------CT
T ss_pred EECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccC----------------CC
Confidence 99999764332222 24568999999999998887553 4 4 9999999876532 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCcc--CCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 254 VRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
+...|+.||++.|.+++.++.+ .++++++++||.++++.... .... +........+ ...+++
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~----~~~~~~~~~~---------~~~~~~ 211 (244)
T 3d3w_A 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPH----KAKTMLNRIP---------LGKFAE 211 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTT----HHHHHHHTCT---------TCSCBC
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChH----HHHHHHhhCC---------CCCCcC
Confidence 3478999999999999999876 48999999999999975321 0111 1122222211 235889
Q ss_pred HHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 329 VSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 329 v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
++|+|++++.+++++ ..| .|++.++..
T Consensus 212 ~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 212 VEHVVNAILFLLSDRSGMTTGSTLPVEGGFW 242 (244)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 999999999999754 234 788877643
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=191.20 Aligned_cols=223 Identities=13% Similarity=0.114 Sum_probs=151.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~----------- 176 (447)
.++++|++|||||+|+||++++++|+++|++|++++|+.....+...... ...++.++.+|+.+..
T Consensus 21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 100 (281)
T 3v2h_A 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVAD 100 (281)
T ss_dssp -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999985332222221111 2347888999998763
Q ss_pred -ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 -LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 169 (281)
T 3v2h_A 101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVA----------- 169 (281)
T ss_dssp HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-----------
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccC-----------
Confidence 236999999999865443332 24568999999999999986 34454 9999999875421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHH-HHH-hCCC-eEEecCC
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVA-QAL-RKEP-LTVYGDG 320 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~~ 320 (447)
......|+.||++.+.+++.++.++ |+++.+|+||.+++|..... ...... ... .... ...+.+.
T Consensus 170 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 240 (281)
T 3v2h_A 170 -----SPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQ----IPDQARTRGITEEQVINEVMLKG 240 (281)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC--------------------------------C
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhh----cchhhhhcCCCHHHHHHHHHHhc
Confidence 1223789999999999999998764 89999999999998753211 000000 000 0000 0112223
Q ss_pred CeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.....+++++|+|+++++++.... .| .+++.+|
T Consensus 241 ~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG 277 (281)
T 3v2h_A 241 QPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGG 277 (281)
T ss_dssp CTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTT
T ss_pred CCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCC
Confidence 334568999999999999998653 34 7777665
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=188.67 Aligned_cols=218 Identities=17% Similarity=0.161 Sum_probs=152.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+. +....... . .++.+|+.+.. +.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~~~g~ 77 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG--KEVAEAIG--G-AFFQVDLEDERERVRFVEEAAYALGR 77 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH--HHHHHHHT--C-EEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH--HHHHHHhh--C-CEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 3578999999999999999999999999999999997543 22222222 3 77889987752 236
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||......... +....+++|+.|+.++++++.+ .+. +||++||...+..
T Consensus 78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~--------------- 142 (256)
T 2d1y_A 78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFA--------------- 142 (256)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSB---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCC---------------
Confidence 999999999765433222 2456899999999999887743 455 9999999875421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHH-hCCCeEEecCCCeeEcc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQAL-RKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 326 (447)
......|+.||++.+.+++.++.++ ++++++++||.+.++.. ..++.... .......+........+
T Consensus 143 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (256)
T 2d1y_A 143 -EQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAV--------LEAIALSPDPERTRRDWEDLHALRRL 213 (256)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------HHHHC--------CHHHHTTSTTSSC
T ss_pred -CCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchh--------hhccccccCCHHHHHHHHhcCCCCCC
Confidence 1123789999999999999998764 89999999999986521 11100000 00100001111122458
Q ss_pred ccHHHHHHHHHHHHcCC---CCC-cEEecCCCccCH
Q 013226 327 QFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFTM 358 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s~ 358 (447)
++++|+|+++++++.++ ..| .+++.++...++
T Consensus 214 ~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 214 GKPEEVAEAVLFLASEKASFITGAILPVDGGMTASF 249 (256)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC
T ss_pred cCHHHHHHHHHHHhCchhcCCCCCEEEECCCccccc
Confidence 89999999999999764 235 788887765543
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=187.11 Aligned_cols=212 Identities=17% Similarity=0.096 Sum_probs=155.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++|+++||||+|+||++++++|+++|++|++++++.....+.+.... ...++.++.+|+++.. +.+
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 82 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS 82 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999999875433222222111 2346788999998763 136
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 147 (246)
T 3osu_A 83 LDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVG--------------- 147 (246)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC---------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCC---------------
Confidence 999999999865433222 24568999999999999988 44555 9999999875421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
..+...|+.||++.+.+++.++.+ .|+++++++||.++++.... +...+........++ ..+.
T Consensus 148 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~p~---------~r~~ 213 (246)
T 3osu_A 148 -NPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA----LSDELKEQMLTQIPL---------ARFG 213 (246)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSC----SCHHHHHHHHTTCTT---------CSCB
T ss_pred -CCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccc----cCHHHHHHHHhcCCC---------CCCc
Confidence 112378999999999999999874 58999999999999876421 223444444444332 2367
Q ss_pred cHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 328 FVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
+++|+|+++++++..+. .| .+++.+|.
T Consensus 214 ~~~dva~~v~~l~s~~~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 214 QDTDIANTVAFLASDKAKYITGQTIHVNGGM 244 (246)
T ss_dssp CHHHHHHHHHHHTSGGGTTCCSCEEEESTTS
T ss_pred CHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 88999999999987542 24 78887653
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-22 Score=186.41 Aligned_cols=217 Identities=15% Similarity=0.084 Sum_probs=154.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------ 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------ 177 (447)
.+++|+|+||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+...
T Consensus 10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMAT-KAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999998643211 111111 12468899999987631
Q ss_pred cCCCEEEEeccCCC-CCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPAS-PVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~-~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||... ...... +....+++|+.++.++++++.+ .+. +||++||...+..
T Consensus 89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------ 156 (260)
T 3awd_A 89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIV------------ 156 (260)
T ss_dssp SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhccc------------
Confidence 36999999999754 222221 2356899999999999988754 344 9999999875432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
.+..+...|+.+|++.|.+++.++.+ .+++++++|||.+++|.... ......+......+.++ .
T Consensus 157 --~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~--~~~~~~~~~~~~~~~~~---------~ 223 (260)
T 3awd_A 157 --NRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRF--GMEKPELYDAWIAGTPM---------G 223 (260)
T ss_dssp --CSSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHH--HHTCHHHHHHHHHTCTT---------S
T ss_pred --CCCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhc--ccCChHHHHHHHhcCCc---------C
Confidence 12222368999999999999999877 69999999999999986420 00002233333333221 2
Q ss_pred ccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
.+++++|+|++++.++.+. ..| .|++.++.
T Consensus 224 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 224 RVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence 4789999999999999753 234 78887653
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=188.34 Aligned_cols=218 Identities=15% Similarity=0.110 Sum_probs=156.8
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc--ccCCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH--HFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+.... .....++.++.+|++++.
T Consensus 6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (262)
T 3pk0_A 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEE 85 (262)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999864432211111 112247889999998763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----CC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||........+ +....+++|+.|+.++++++.+. +. +||++||.....
T Consensus 86 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------------- 152 (262)
T 3pk0_A 86 FGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI------------- 152 (262)
T ss_dssp HSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT-------------
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc-------------
Confidence 237999999999865443322 24557999999999998887654 54 999999976421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
.+......|+.||++.+.+++.++.+ .|+++++|+||.+++|...... ..+........+. .
T Consensus 153 --~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~----~~~~~~~~~~~p~---------~ 217 (262)
T 3pk0_A 153 --TGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENG----EEYIASMARSIPA---------G 217 (262)
T ss_dssp --BCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTC----HHHHHHHHTTSTT---------S
T ss_pred --CCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccC----HHHHHHHHhcCCC---------C
Confidence 01122378999999999999999877 5999999999999987432111 2233333333222 2
Q ss_pred ccccHHHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 325 SFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
.+.+++|+|+++++++..+ ..| .+++.+|..+
T Consensus 218 r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 218 ALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQVL 253 (262)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred CCcCHHHHHHHHHHHhCccccCCcCCEEEECCCeec
Confidence 3678999999999999754 335 7777766543
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=182.86 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=137.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----c---cCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L---LEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~---~~~d~Vih~A 187 (447)
|+|+||||+|+||++++++|+ +|++|++++|+.. .+.+|+.+.. + .++|+|||||
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~~d~vi~~a 66 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG----------------DVTVDITNIDSIKKMYEQVGKVDAIVSAT 66 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS----------------SEECCTTCHHHHHHHHHHHCCEEEEEECC
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc----------------ceeeecCCHHHHHHHHHHhCCCCEEEECC
Confidence 489999999999999999999 9999999998632 2456665542 2 2489999999
Q ss_pred cCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHH
Q 013226 188 CPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDE 260 (447)
Q Consensus 188 g~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~ 260 (447)
|......... ...+.+++|+.++.++++++.+. +.+||++||...+. +..+...|+.
T Consensus 67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~~Y~~ 130 (202)
T 3d7l_A 67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED----------------PIVQGASAAM 130 (202)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS----------------CCTTCHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC----------------CCCccHHHHH
Confidence 9754333322 23467889999999999999876 45999999987542 2223378999
Q ss_pred HHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHH
Q 013226 261 GKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338 (447)
Q Consensus 261 sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~ 338 (447)
+|...|.+++.++.+. +++++++|||.++++.. . . ++....+++++++|+|++++.
T Consensus 131 sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~---------~----~---------~~~~~~~~~~~~~dva~~~~~ 188 (202)
T 3d7l_A 131 ANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD---------K----L---------EPFFEGFLPVPAAKVARAFEK 188 (202)
T ss_dssp HHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH---------H----H---------GGGSTTCCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh---------h----h---------hhhccccCCCCHHHHHHHHHH
Confidence 9999999999998764 99999999999998741 1 0 011123568999999999999
Q ss_pred HHcCCCCC-cEEe
Q 013226 339 LMEGDHVG-PFNL 350 (447)
Q Consensus 339 ~l~~~~~g-~~~i 350 (447)
++++...| .|++
T Consensus 189 ~~~~~~~G~~~~v 201 (202)
T 3d7l_A 189 SVFGAQTGESYQV 201 (202)
T ss_dssp HHHSCCCSCEEEE
T ss_pred hhhccccCceEec
Confidence 88766555 6776
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=184.20 Aligned_cols=213 Identities=14% Similarity=0.053 Sum_probs=151.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----c-------cC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L-------LE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~-------~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... .....+. .++.++.+|+.+.. + .+
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~D~~d~~~v~~~~~~~~~~~g~ 86 (263)
T 3ak4_A 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQ-AVVAGLE-NGGFAVEVDVTKRASVDAAMQKAIDALGG 86 (263)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTCT-TCCEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHh-cCCeEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999998643221 1111111 15778889997753 1 27
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+|+||||||......... +....+++|+.|+.++++++.+ .+ .+||++||...+..
T Consensus 87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 152 (263)
T 3ak4_A 87 FDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVG-------------- 152 (263)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC--------------
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccC--------------
Confidence 999999999764332222 2456899999999999888754 34 49999999875421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchH-----------HHHHHHHHhCCCeE
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVV-----------SNFVAQALRKEPLT 315 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~-----------~~~~~~~~~~~~~~ 315 (447)
......|+.||++.+.+++.++.+. |+++++|+||.++++... ... ...........
T Consensus 153 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--- 223 (263)
T 3ak4_A 153 --APLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQE----REIIWEAELRGMTPEAVRAEYVSLT--- 223 (263)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHH----HHHHHHHHHHTSCHHHHHHHHHHTC---
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhh----hhccccccccccCcHHHHHHHHhcC---
Confidence 1123689999999999999998764 899999999999986421 000 11111111111
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
....+++++|+|+++++++.++ ..| .+++.++..
T Consensus 224 ------p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 224 ------PLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGVR 261 (263)
T ss_dssp ------TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred ------CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcCEe
Confidence 1134789999999999999764 235 788877643
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=191.01 Aligned_cols=219 Identities=13% Similarity=0.028 Sum_probs=152.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+ ....+ ...++.++.+|+.++. +
T Consensus 6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (260)
T 2ae2_A 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELND-CLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF 84 (260)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999986432211 11111 1246788999998762 1
Q ss_pred -cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 -LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 -~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||......... +....+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 152 (260)
T 2ae2_A 85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALA------------ 152 (260)
T ss_dssp TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSC------------
T ss_pred CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC------------
Confidence 46999999999764332222 345689999999999998873 4555 9999999876431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCcc-CCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.||++.+.+++.++.++ ++++++++||.+.++.... ....-....+.......+ .
T Consensus 153 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~ 219 (260)
T 2ae2_A 153 ----VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA---------L 219 (260)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST---------T
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCC---------C
Confidence 1223689999999999999998765 8999999999998763210 000000111112222211 1
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
..+.+++|+|+++++++..+ ..| .+++.+|...
T Consensus 220 ~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~~ 256 (260)
T 2ae2_A 220 RRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLMA 256 (260)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCccc
Confidence 24789999999999998753 235 6777766443
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=188.56 Aligned_cols=217 Identities=16% Similarity=0.128 Sum_probs=156.8
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~----------- 176 (447)
..+++|++|||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+..
T Consensus 37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 115 (293)
T 3rih_A 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSS-VTAELGELGAGNVIGVRLDVSDPGSCADAARTVVD 115 (293)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH-HHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999997543322 11111 1247889999998763
Q ss_pred -ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 -LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 116 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~------------ 183 (293)
T 3rih_A 116 AFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPV------------ 183 (293)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTT------------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhcc------------
Confidence 246999999999865443322 24568999999999999987 34454 999999986421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
.+......|+.||++.+.+++.++.+ .|+++++|+||.|++|.... ....+........++.
T Consensus 184 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~p~~-------- 248 (293)
T 3rih_A 184 ---TGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVD----MGEEYISGMARSIPMG-------- 248 (293)
T ss_dssp ---BBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHH----TCHHHHHHHHTTSTTS--------
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhh----ccHHHHHHHHhcCCCC--------
Confidence 01112378999999999999999876 48999999999999874311 1123333344433221
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
-+..++|+|+++++++... ..| .+++.+|..+
T Consensus 249 -r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 249 -MLGSPVDIGHLAAFLATDEAGYITGQAIVVDGGQVL 284 (293)
T ss_dssp -SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred -CCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 2567899999999999754 234 7777766543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=187.73 Aligned_cols=219 Identities=15% Similarity=0.170 Sum_probs=157.5
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+..
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEA-VAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999986432211 11111 1346888999998763
Q ss_pred ccCCCEEEEeccCCCCCCccc---ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF---NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~---~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+.++|+||||||......++. +....+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 152 (256)
T 3gaf_A 87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN-------------- 152 (256)
T ss_dssp HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC--------------
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC--------------
Confidence 136999999999865543322 245689999999999999863 4454 999999987652
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.||++.+.+++.++.++ |+++.+++||.+.++..... .............+ ...
T Consensus 153 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~p---------~~r 218 (256)
T 3gaf_A 153 --TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATV---LTPEIERAMLKHTP---------LGR 218 (256)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHH---CCHHHHHHHHTTCT---------TSS
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhc---cCHHHHHHHHhcCC---------CCC
Confidence 22234789999999999999998764 89999999999987632100 00122222222222 134
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCCCccCH
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFTM 358 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s~ 358 (447)
+.+++|+|+++++++.... .| .+++.+|...++
T Consensus 219 ~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 219 LGEAQDIANAALFLCSPAAAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCC-
T ss_pred CCCHHHHHHHHHHHcCCcccCccCCEEEECCCccccC
Confidence 7889999999999997542 34 888887766554
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-22 Score=189.08 Aligned_cols=228 Identities=17% Similarity=0.077 Sum_probs=158.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCC--------cccccc---c--cCCCceEEEeccccccc-
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGK--------KDNLIH---H--FGNPRFELIRHDVVEPI- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~--------~~~~~~---~--~~~~~v~~~~~D~~~~~- 176 (447)
.++++|++|||||+|+||++++++|+++|++|++++|+.... .+.+.. . ....++.++.+|++++.
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES 88 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 457899999999999999999999999999999999863211 111110 0 01347889999998763
Q ss_pred -----------ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCC
Q 013226 177 -----------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQH 239 (447)
Q Consensus 177 -----------~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~ 239 (447)
+.++|+||||||+.......++....+++|+.|+.++++++.. .+ .+||++||...+....
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 166 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG-- 166 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC--
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc--
Confidence 1369999999998654443445677999999999999998643 23 3999999987542210
Q ss_pred CCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHH-HhCCCeE
Q 013226 240 PQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQA-LRKEPLT 315 (447)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~-~~~~~~~ 315 (447)
.+......|+.||++.+.+++.++.++ |+++++|+||.|++|... ......++... .......
T Consensus 167 ----------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~---~~~~~~~~~~~~~~~~~~~ 233 (278)
T 3sx2_A 167 ----------SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMIN---NEFTREWLAKMAAATDTPG 233 (278)
T ss_dssp ----------CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTS---SHHHHHHHHHHHHHCC--C
T ss_pred ----------cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccch---hhhHHHHHhhccchhhhhh
Confidence 111223679999999999999998764 799999999999998642 12222222221 1222111
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
.+++... ..+++++|+|+++++++... ..| .+++.+|.
T Consensus 234 ~~~~~~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 275 (278)
T 3sx2_A 234 AMGNAMP-VEVLAPEDVANAVAWLVSDQARYITGVTLPVDAGF 275 (278)
T ss_dssp TTSCSSS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred hhhhhcC-cCcCCHHHHHHHHHHHhCcccccccCCEEeECCCc
Confidence 2222222 56889999999999999754 234 77776653
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=188.36 Aligned_cols=216 Identities=15% Similarity=0.085 Sum_probs=138.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc-----c------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI-----L------ 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~------ 177 (447)
..+++|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+.. +
T Consensus 10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (266)
T 1xq1_A 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNE-CLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM 88 (266)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999986432211 11111 1236788889987752 1
Q ss_pred --cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 178 --LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 178 --~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
.++|+||||||........ .+....+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~----------- 157 (266)
T 1xq1_A 89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVS----------- 157 (266)
T ss_dssp HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------------------
T ss_pred hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccC-----------
Confidence 5699999999975433222 234568999999999999988 44554 9999999876532
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.+|++.+.+++.++.+. |++++++|||.+++|..... ....+....... ...
T Consensus 158 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~---------~~~ 220 (266)
T 1xq1_A 158 -----ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV---YDDEFKKVVISR---------KPL 220 (266)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------------------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhh---cCHHHHHHHHhc---------CCC
Confidence 1123789999999999999998764 99999999999999863210 001111111111 111
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
..+++++|+|+++++++..+ ..| .+++.++..
T Consensus 221 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 221 GRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLT 256 (266)
T ss_dssp ---CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCEE
T ss_pred CCCcCHHHHHHHHHHHcCccccCccCcEEEEcCCcc
Confidence 24789999999999998753 234 777776643
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-22 Score=184.97 Aligned_cols=215 Identities=14% Similarity=0.050 Sum_probs=150.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCce-EEEeccccccc-----------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRF-ELIRHDVVEPI-----------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~-----------~~~ 179 (447)
++++|+++||||+|+||++++++|+++|++|++++|+..... ...... ..++ .++.+|+.+.. +.+
T Consensus 8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (254)
T 2wsb_A 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALD-RAAQEL-GAAVAARIVADVTDAEAMTAAAAEAEAVAP 85 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH-GGGEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh-cccceeEEEEecCCHHHHHHHHHHHHhhCC
Confidence 467899999999999999999999999999999998643211 111111 1245 78889987753 147
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||......... .....+++|+.|+.++++++ ++.+. +||++||...+.. .
T Consensus 86 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------------~ 151 (254)
T 2wsb_A 86 VSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIV--------------N 151 (254)
T ss_dssp CCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------------C
T ss_pred CcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccC--------------C
Confidence 999999999765433222 23568899999987777765 34455 9999999886532 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
+..+...|+.+|++.|.+++.++.+. +++++++|||.++++....... ...+........+. ..++
T Consensus 152 ~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~---------~~~~ 220 (254)
T 2wsb_A 152 RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRE--RPELFETWLDMTPM---------GRCG 220 (254)
T ss_dssp SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHT--CHHHHHHHHHTSTT---------SSCB
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcccc--ChHHHHHHHhcCCC---------CCCC
Confidence 22233789999999999999998765 8999999999999874210000 01222233332221 2478
Q ss_pred cHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 328 FVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+++|+|++++.++.++ ..| .+++.++
T Consensus 221 ~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 250 (254)
T 2wsb_A 221 EPSEIAAAALFLASPAASYVTGAILAVDGG 250 (254)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 9999999999998653 234 6777654
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=186.48 Aligned_cols=227 Identities=18% Similarity=0.116 Sum_probs=156.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCC--------ccccc---cc--cCCCceEEEeccccccc--
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGK--------KDNLI---HH--FGNPRFELIRHDVVEPI-- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~--------~~~~~---~~--~~~~~v~~~~~D~~~~~-- 176 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.... .+.+. .. ....++.++.+|+++..
T Consensus 7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 86 (281)
T 3s55_A 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL 86 (281)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 56889999999999999999999999999999999964321 11111 00 12346888999998763
Q ss_pred ----------ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCC
Q 013226 177 ----------LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPL 237 (447)
Q Consensus 177 ----------~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~ 237 (447)
+.++|+||||||+.......+ +....+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-- 164 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSA-- 164 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSC--
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCC--
Confidence 236999999999865433322 245688999999999999863 3444 9999999876522
Q ss_pred CCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCe
Q 013226 238 QHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPL 314 (447)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~ 314 (447)
......|+.||++.+.+++.++.+ .|+++.+|+||.|++|.... .+....+.........
T Consensus 165 --------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~ 227 (281)
T 3s55_A 165 --------------NFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHN---DFVFGTMRPDLEKPTL 227 (281)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSS---HHHHHC-------CCH
T ss_pred --------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccc---hhhhccccccccccch
Confidence 223478999999999999999876 48999999999999986421 0000000000000000
Q ss_pred -----EEecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCccC
Q 013226 315 -----TVYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFT 357 (447)
Q Consensus 315 -----~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s 357 (447)
...........+.+++|+|+++++++.+.. .| .+++.+|...+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 228 KDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHHHHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGG
T ss_pred hHHHHHHHhhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCcccC
Confidence 000001112468899999999999998643 34 78888775543
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-23 Score=186.65 Aligned_cols=186 Identities=13% Similarity=0.155 Sum_probs=139.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----cc---CCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LL---EVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~---~~d~Vih~A 187 (447)
|+|+||||+|+||++++++|+++ +|++++|+.... +.+..... . .++.+|+.+.. +. ++|+|||||
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~-~~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~a 74 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGAL-AELAREVG--A-RALPADLADELEAKALLEEAGPLDLLVHAV 74 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHH-HHHHHHHT--C-EECCCCTTSHHHHHHHHHHHCSEEEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHH-HHHHHhcc--C-cEEEeeCCCHHHHHHHHHhcCCCCEEEECC
Confidence 57999999999999999999998 999999864321 11111111 1 77888887653 23 799999999
Q ss_pred cCCCCCCc----ccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHH
Q 013226 188 CPASPVHY----KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 188 g~~~~~~~----~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK 262 (447)
|....... ..+....+++|+.++.++++++++.+. +||++||...|.. ..+...|+.+|
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~----------------~~~~~~Y~~sK 138 (207)
T 2yut_A 75 GKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQ----------------VPGFAAYAAAK 138 (207)
T ss_dssp CCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHS----------------STTBHHHHHHH
T ss_pred CcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccC----------------CCCcchHHHHH
Confidence 97643322 223567899999999999999966665 9999999987632 22347899999
Q ss_pred HHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHH
Q 013226 263 RTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRL 339 (447)
Q Consensus 263 ~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~ 339 (447)
+..|.+++.++.+ .|++++++|||.++++... +.+.....+++++|+|++++.+
T Consensus 139 ~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~-----------------------~~~~~~~~~~~~~dva~~~~~~ 195 (207)
T 2yut_A 139 GALEAYLEAARKELLREGVHLVLVRLPAVATGLWA-----------------------PLGGPPKGALSPEEAARKVLEG 195 (207)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG-----------------------GGTSCCTTCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc-----------------------ccCCCCCCCCCHHHHHHHHHHH
Confidence 9999999999876 5999999999999986410 0112235789999999999999
Q ss_pred HcCCCCC
Q 013226 340 MEGDHVG 346 (447)
Q Consensus 340 l~~~~~g 346 (447)
++++..+
T Consensus 196 ~~~~~~~ 202 (207)
T 2yut_A 196 LFREPVP 202 (207)
T ss_dssp HC--CCC
T ss_pred HhCCCCc
Confidence 9877653
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=181.13 Aligned_cols=212 Identities=17% Similarity=0.127 Sum_probs=150.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc-----c-------c
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI-----L-------L 178 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~-----~-------~ 178 (447)
++|+++||||+|+||++++++|+++|++|++++|+..... ...... ...++.++.+|+.+.. + .
T Consensus 1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLE-ETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFG 79 (250)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3678999999999999999999999999999998643221 111111 1236888999998753 1 2
Q ss_pred CCCEEEEeccCCCCCC---cc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 179 EVDQIYHLACPASPVH---YK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~---~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
++|+||||||...... +. .+....+++|+.++.++++++. +.+. +||++||...+..
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----------- 148 (250)
T 2cfc_A 80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVA----------- 148 (250)
T ss_dssp CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-----------
T ss_pred CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC-----------
Confidence 7999999999764332 21 2355688999999987776653 4455 9999999876532
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
..+...|+.+|++.+.+++.++.+. +++++++|||.+++|....... ...+........++
T Consensus 149 -----~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~--------- 212 (250)
T 2cfc_A 149 -----FPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLD--QPELRDQVLARIPQ--------- 212 (250)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHT--SHHHHHHHHTTCTT---------
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccC--CHHHHHHHHhcCCC---------
Confidence 1123789999999999999998765 9999999999999986421000 01222333332221
Q ss_pred EccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
..+.+++|+|++++.++.++. .| .+++.++
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 246 (250)
T 2cfc_A 213 KEIGTAAQVADAVMFLAGEDATYVNGAALVMDGA 246 (250)
T ss_dssp CSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHcCchhhcccCCEEEECCc
Confidence 247899999999999998642 34 6777654
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=183.47 Aligned_cols=212 Identities=15% Similarity=0.071 Sum_probs=147.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
..+++|++|||||+|+||++++++|+++|++|++++|+.....+.+. ...+.++.+|+.+.. +.
T Consensus 23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (260)
T 3gem_A 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELR----QAGAVALYGDFSCETGIMAFIDLLKTQTS 98 (260)
T ss_dssp ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHH----HHTCEEEECCTTSHHHHHHHHHHHHHHCS
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH----hcCCeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999997543222221 124788999997763 23
Q ss_pred CCCEEEEeccCCCCCCcccC---hHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 179 EVDQIYHLACPASPVHYKFN---PVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~~---~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
++|+||||||.......+.+ ....+++|+.|+.++++++.. .+. +||++||...+..
T Consensus 99 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~--------------- 163 (260)
T 3gem_A 99 SLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKG--------------- 163 (260)
T ss_dssp CCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTC---------------
T ss_pred CCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC---------------
Confidence 69999999997654332222 346899999999999988743 343 9999999876522
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
......|+.||++.+.+++.++.++ ++++++|+||.+.++.... ..+........++ .-+..
T Consensus 164 -~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~------~~~~~~~~~~~p~---------~r~~~ 227 (260)
T 3gem_A 164 -SSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDD------AAYRANALAKSAL---------GIEPG 227 (260)
T ss_dssp -CSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC---------------------CCS---------CCCCC
T ss_pred -CCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCC------HHHHHHHHhcCCC---------CCCCC
Confidence 2234789999999999999998775 5999999999998764210 1111122222111 23557
Q ss_pred HHHHHHHHHHHHcCCC-CC-cEEecCCCccC
Q 013226 329 VSDLVEGLIRLMEGDH-VG-PFNLGNPGEFT 357 (447)
Q Consensus 329 v~D~a~ai~~~l~~~~-~g-~~~i~~~~~~s 357 (447)
++|+|++++++++... .| ++++.+|..++
T Consensus 228 ~edva~~v~~L~~~~~itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 228 AEVIYQSLRYLLDSTYVTGTTLTVNGGRHVK 258 (260)
T ss_dssp THHHHHHHHHHHHCSSCCSCEEEESTTTTTC
T ss_pred HHHHHHHHHHHhhCCCCCCCEEEECCCcccC
Confidence 8999999999996543 34 78888776554
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=187.92 Aligned_cols=217 Identities=17% Similarity=0.162 Sum_probs=152.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC--CCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG--NPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~D~~~~~------------~~ 178 (447)
+++|+++||||+|+||++++++|+++|++|++++|+.....+.+..... ..++.++.+|+.+.. +.
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 84 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG 84 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999998864432222222111 246889999998763 13
Q ss_pred CCCEEEEeccCC--CCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 179 EVDQIYHLACPA--SPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 179 ~~d~Vih~Ag~~--~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
++|+||||||+. ...... .+....+++|+.|+.++++++ ++.+. +||++||...++.
T Consensus 85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~------------ 152 (264)
T 3i4f_A 85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSA------------ 152 (264)
T ss_dssp CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGC------------
T ss_pred CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhccc------------
Confidence 799999999942 222221 224568999999999999987 55555 9999999865422
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
.+..+...|+.+|++.+.+++.++.+ .|+++++|+||.++++... ............. ....
T Consensus 153 --~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~----~~~~~~~~~~~~~---------~p~~ 217 (264)
T 3i4f_A 153 --PGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKE----ATIQEARQLKEHN---------TPIG 217 (264)
T ss_dssp --CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGS----CCHHHHHHC-----------------
T ss_pred --CCCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccch----hccHHHHHHHhhc---------CCCC
Confidence 12223478999999999999999876 5899999999999987532 1222222111111 1123
Q ss_pred ccccHHHHHHHHHHHHcCCC---CC-cEEecCCCcc
Q 013226 325 SFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEF 356 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~ 356 (447)
.+.+++|+|+++++++.... .| ++++.+|-..
T Consensus 218 r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG~~~ 253 (264)
T 3i4f_A 218 RSGTGEDIARTISFLCEDDSDMITGTIIEVTGAVDV 253 (264)
T ss_dssp CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCSCCC
T ss_pred CCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCceee
Confidence 47899999999999997542 34 7888776543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-22 Score=188.06 Aligned_cols=217 Identities=12% Similarity=0.040 Sum_probs=155.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL----------- 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~----------- 177 (447)
..+++|+++||||+|+||++++++|+++|++|++++|... .++....+ ...++.++.+|+.+...
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (273)
T 3uf0_A 27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG--VKEVADEIADGGGSAEAVVADLADLEGAANVAEELAAT 104 (273)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTH--HHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHH--HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999996421 11111111 23468889999987631
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 105 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~-------------- 170 (273)
T 3uf0_A 105 RRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ-------------- 170 (273)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC--------------
Confidence 36999999999875444332 24568999999999999876 33454 999999988652
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.||++.+.+++.++.+ .|+++.+|+||.|++|....... ............+. ..
T Consensus 171 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~---------~r 237 (273)
T 3uf0_A 171 --GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRA--DDERAAEITARIPA---------GR 237 (273)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT--SHHHHHHHHHHSTT---------SS
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhccc--CHHHHHHHHhcCCC---------CC
Confidence 2223478999999999999999876 58999999999999875311000 01122222222221 23
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
+.+++|+|+++++++.+. ..| .+++.+|...
T Consensus 238 ~~~pedva~~v~~L~s~~a~~itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 238 WATPEDMVGPAVFLASDAASYVHGQVLAVDGGWLA 272 (273)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHhCchhcCCcCCEEEECcCccC
Confidence 678899999999999754 234 7778766543
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-21 Score=179.24 Aligned_cols=214 Identities=14% Similarity=0.069 Sum_probs=140.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++++|+++||||+|+||++++++|+++|++|++++|+.... . ..+.++.+|+.+.. +.+
T Consensus 4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~------~---~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 74 (250)
T 2fwm_X 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE------Q---YPFATEVMDVADAAQVAQVCQRLLAETER 74 (250)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS------C---CSSEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh------c---CCceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 35789999999999999999999999999999999964321 0 12677888987753 136
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||........ .+....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------------- 138 (250)
T 2fwm_X 75 LDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT---------------- 138 (250)
T ss_dssp CCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC----------------
Confidence 99999999976433222 235568999999999999887 34444 999999987652
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHH-HHHhCCCeEEecCCCeeEcc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVA-QALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 326 (447)
+......|+.+|+..+.+++.++.+. |+++++++||.++++....... ...... ..... ...+........+
T Consensus 139 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~p~~~~ 214 (250)
T 2fwm_X 139 PRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV--SDDAEEQRIRGF--GEQFKLGIPLGKI 214 (250)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------------
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc--ChhHHHHHHhhh--hhcccccCCCCCC
Confidence 12234789999999999999998764 8999999999999875321000 000000 00000 0000000112247
Q ss_pred ccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 327 QFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
.+++|+|+++++++.++ ..| .+++.++.
T Consensus 215 ~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 246 (250)
T 2fwm_X 215 ARPQEIANTILFLASDLASHITLQDIVVDGGS 246 (250)
T ss_dssp -CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 89999999999999764 235 67776654
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=185.10 Aligned_cols=221 Identities=14% Similarity=0.026 Sum_probs=152.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQI 183 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~V 183 (447)
++++|+++||||+|+||++++++|+++|++|++++|+.....+. .... ..++.++.+|+.+.. +.++|+|
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~-~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~l 90 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAA-ARTM-AGQVEVRELDLQDLSSVRRFADGVSGADVL 90 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HTTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence 56889999999999999999999999999999999964432221 1111 347899999998763 2368999
Q ss_pred EEeccCCCCCC--cccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCC-CCCCCCCCCcCCCCCCCCCCChHH
Q 013226 184 YHLACPASPVH--YKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGD-PLQHPQAETYWGNVNPIGVRSCYD 259 (447)
Q Consensus 184 ih~Ag~~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~-~~~~~~~e~~~~~~~~~~~~~~Y~ 259 (447)
|||||+..+.. ..++.+..+++|+.|+.++++++..... |||++||...+.. .......++ ..+..+...|+
T Consensus 91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~----~~~~~~~~~Y~ 166 (291)
T 3rd5_A 91 INNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWR----SRRYSPWLAYS 166 (291)
T ss_dssp EECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCS----SSCCCHHHHHH
T ss_pred EECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCccccccc----ccCCCCcchHH
Confidence 99999865331 2334667999999999999999988776 9999999886642 222111111 13444557899
Q ss_pred HHHHHHHHHHHHHHhhh---C--CcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHH
Q 013226 260 EGKRTAETLTMDYHRGL---G--IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334 (447)
Q Consensus 260 ~sK~~~E~~~~~~~~~~---~--i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 334 (447)
.||++.+.+++.++.++ + +++.+++||.|.++...... ..+. ..+...+ ..+-..+++|+|+
T Consensus 167 ~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~----~~~~-~~~~~~~--------~~~~~~~~~~~A~ 233 (291)
T 3rd5_A 167 QSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASG----RKLG-DALMSAA--------TRVVATDADFGAR 233 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC---------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccc----hHHH-HHHHHHH--------HHHHhCCHHHHHH
Confidence 99999999999998764 4 99999999999887532110 0110 1111100 1122346999999
Q ss_pred HHHHHHcCCC-CCcEEec
Q 013226 335 GLIRLMEGDH-VGPFNLG 351 (447)
Q Consensus 335 ai~~~l~~~~-~g~~~i~ 351 (447)
++++++.++. .|.|...
T Consensus 234 ~~~~l~~~~~~~G~~~~v 251 (291)
T 3rd5_A 234 QTLYAASQDLPGDSFVGP 251 (291)
T ss_dssp HHHHHHHSCCCTTCEEEE
T ss_pred HHHHHHcCCCCCCceeCC
Confidence 9999988753 3544443
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-22 Score=191.23 Aligned_cols=217 Identities=15% Similarity=0.123 Sum_probs=155.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|++|||||+|+||++++++|+++|++|++++|+.....+...... ...++.++.+|+.+..
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999986443222221111 2347889999998763
Q ss_pred ccCCCEEEEeccCCCCCC-cc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 177 LLEVDQIYHLACPASPVH-YK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~-~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+.++|+||||||...... .. ++....+++|+.|+.++++++... +.+||++||...+..
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------- 189 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEG------------- 189 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHC-------------
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCC-------------
Confidence 236999999999754321 21 235678999999999999999775 238999999886532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.||++.+.+++.++.++ |+++.+|+||.|++|..... +-........ .......
T Consensus 190 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~---------~~~p~~r 254 (291)
T 3ijr_A 190 ---NETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSS---FDEKKVSQFG---------SNVPMQR 254 (291)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHH---SCHHHHHHTT---------TTSTTSS
T ss_pred ---CCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCccccc---CCHHHHHHHH---------ccCCCCC
Confidence 1123789999999999999998765 89999999999998742100 0011111111 1112234
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
+.+++|+|+++++++... ..| .+++.+|..
T Consensus 255 ~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 288 (291)
T 3ijr_A 255 PGQPYELAPAYVYLASSDSSYVTGQMIHVNGGVI 288 (291)
T ss_dssp CBCGGGTHHHHHHHHSGGGTTCCSCEEEESSSCC
T ss_pred CcCHHHHHHHHHHHhCCccCCCcCCEEEECCCcc
Confidence 778999999999999754 234 677766543
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=184.44 Aligned_cols=210 Identities=17% Similarity=0.136 Sum_probs=149.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEecCCCC-CccccccccCCCceEEEecccccc-c------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFTG-KKDNLIHHFGNPRFELIRHDVVEP-I------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~-V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~-~------------ 176 (447)
++++|+++||||+|+||++++++|+++|++ |++++|+... ..+++.......++.++.+|+.+. .
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence 357899999999999999999999999997 9999986431 111221111234688899999875 2
Q ss_pred ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC--------CCeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV--------GARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~--------g~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+.++|+||||||... ..+....+++|+.|+.++++++.+. +.+||++||...+..
T Consensus 82 ~g~id~lv~~Ag~~~----~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 144 (254)
T 1sby_A 82 LKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA------------- 144 (254)
T ss_dssp HSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC-------------
T ss_pred cCCCCEEEECCccCC----HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccC-------------
Confidence 136999999999743 3457789999999999999987642 237999999886532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCch-HHHHHHHHHhCCCeEEecCCCeeE
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRV-VSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
......|+.||++.+.+++.++.+ .++++++++||.+.++......... ........... .
T Consensus 145 ---~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~ 209 (254)
T 1sby_A 145 ---IHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS------------H 209 (254)
T ss_dssp ---CTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT------------S
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHhc------------C
Confidence 122368999999999999998875 6899999999999986421100000 00001111111 1
Q ss_pred ccccHHHHHHHHHHHHcCCCCC-cEEecCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDHVG-PFNLGNP 353 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~~g-~~~i~~~ 353 (447)
.+.+++|+|++++.+++....| .|++.++
T Consensus 210 ~~~~~~dvA~~i~~~~~~~~~G~~~~v~gG 239 (254)
T 1sby_A 210 PTQTSEQCGQNFVKAIEANKNGAIWKLDLG 239 (254)
T ss_dssp CCEEHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCEEEEeCC
Confidence 2348999999999999866666 6777665
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-22 Score=183.80 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=141.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------L 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------~ 178 (447)
+++|+|+||||+|+||++++++|+++|++|++++++.....+.....+ ...++.++.+|+.+... .
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG 82 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 568899999999999999999999999999999543222222211111 13468889999987631 2
Q ss_pred CCCEEEEeccCCCCCC----cccChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCcc-ccCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSE-VYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~ 248 (447)
++|+||||||...... ...+..+.+++|+.|+.++++++.+ .+. +||++||.. .++.+
T Consensus 83 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------ 150 (247)
T 2hq1_A 83 RIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNA------------ 150 (247)
T ss_dssp CCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------------
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCC------------
Confidence 7999999999754322 1234567899999999888887653 455 999999975 44431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
....|+.+|++.|.+++.++.++ ++++++++||.+.++.... +...+......+.+ ...
T Consensus 151 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~~ 212 (247)
T 2hq1_A 151 -----GQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV----LPDKVKEMYLNNIP---------LKR 212 (247)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----SCHHHHHHHHTTST---------TSS
T ss_pred -----CCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh----cchHHHHHHHhhCC---------CCC
Confidence 23789999999999999998764 8999999999988753211 11112222222211 134
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
+++++|+|++++.++..+ ..| .|++.++.
T Consensus 213 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 213 FGTPEEVANVVGFLASDDSNYITGQVINIDGGL 245 (247)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CCCHHHHHHHHHHHcCcccccccCcEEEeCCCc
Confidence 789999999999998753 234 88887664
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.8e-22 Score=185.41 Aligned_cols=221 Identities=15% Similarity=0.118 Sum_probs=146.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+..... .+.... ..++.++.+|+.+.. +.
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 82 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAE-RVAGEI-GDAALAVAADISKEADVDAAVEAALSKFG 82 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH-CTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHh-CCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4678899999999999999999999999999999998643222 111112 246888999997763 23
Q ss_pred CCCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHHHHC---------CCeEEEEeCccccCCCCCCCCCCC
Q 013226 179 EVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLAKRV---------GARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~---------g~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
++|+||||||.... .... ++....+++|+.++.++++++... +.+||++||...+.
T Consensus 83 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------- 152 (261)
T 3n74_A 83 KVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR---------- 152 (261)
T ss_dssp CCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS----------
T ss_pred CCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC----------
Confidence 69999999997642 2222 234568999999999888876432 12699999987542
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
+......|+.+|++.+.+++.++.+ .++++.+++||.+.++.... +..... ......+....
T Consensus 153 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------~~~~~~-~~~~~~~~~~~ 217 (261)
T 3n74_A 153 ------PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTT--------FMGEDS-EEIRKKFRDSI 217 (261)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------------C
T ss_pred ------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhh--------hcccCc-HHHHHHHhhcC
Confidence 2222367999999999999999876 48999999999998875311 110000 00001111111
Q ss_pred eeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCccCH
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFTM 358 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s~ 358 (447)
....+++++|+|+++++++... ..| .+++.+|..++-
T Consensus 218 ~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 218 PMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDGGRSIGG 258 (261)
T ss_dssp TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTC--
T ss_pred CcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecCCcccCC
Confidence 2235789999999999999654 234 788887766543
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=186.05 Aligned_cols=212 Identities=17% Similarity=0.123 Sum_probs=150.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEec-CCCCCccccccccC---CCceEEEecccccc----cc------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDN-YFTGKKDNLIHHFG---NPRFELIRHDVVEP----IL------ 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r-~~~~~~~~~~~~~~---~~~v~~~~~D~~~~----~~------ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++| +... .+.+...+. ..++.++.+|+.+. ..
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA-AQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHH
Confidence 357889999999999999999999999999999998 4322 111111110 24678899999876 31
Q ss_pred ------cCCCEEEEeccCCCCCCcc---------------cChHHHHHHHHHHHHHHHHHHHHC---C-------CeEEE
Q 013226 178 ------LEVDQIYHLACPASPVHYK---------------FNPVKTIKTNVVGTLNMLGLAKRV---G-------ARFLL 226 (447)
Q Consensus 178 ------~~~d~Vih~Ag~~~~~~~~---------------~~~~~~~~~Nv~gt~~ll~aa~~~---g-------~r~v~ 226 (447)
.++|+||||||........ ......+++|+.|+.++++++.+. + .+||+
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~ 166 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN 166 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence 2699999999976433222 223468999999999999998763 2 48999
Q ss_pred EeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHH
Q 013226 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSN 303 (447)
Q Consensus 227 ~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~ 303 (447)
+||...+.. ......|+.||++.+.+++.++.++ |+++++|+||.+++| ... ...
T Consensus 167 isS~~~~~~----------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~~-----~~~ 224 (276)
T 1mxh_A 167 LCDAMTDLP----------------LPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PAM-----PQE 224 (276)
T ss_dssp ECCGGGGSC----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SSS-----CHH
T ss_pred ECchhhcCC----------------CCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-ccC-----CHH
Confidence 999886532 1223789999999999999998765 899999999999998 211 122
Q ss_pred HHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 304 FVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
+........++ .+++.+++|+|+++++++.... .| .+++.++.
T Consensus 225 ~~~~~~~~~p~--------~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 225 TQEEYRRKVPL--------GQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 271 (276)
T ss_dssp HHHHHHTTCTT--------TSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHhcCCC--------CCCCCCHHHHHHHHHHHhCccccCccCcEEEECCch
Confidence 23333322111 1127899999999999997532 35 67776653
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=183.37 Aligned_cols=219 Identities=10% Similarity=0.030 Sum_probs=153.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|++++. +
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEE-AKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF 81 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999986443221 11111 1246888999998763 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH-----HHCC-CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA-----KRVG-ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa-----~~~g-~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||......... +....+++|+.|+.++++++ ++.+ .+||++||...+..
T Consensus 82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 149 (257)
T 3imf_A 82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDA------------ 149 (257)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSC------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccC------------
Confidence 36999999999765433322 24568999999999999887 3333 39999999875522
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh----hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.||++.+.+++.++.+ .|+++++|+||.+.++...... .....+........+ .
T Consensus 150 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~p---------~ 215 (257)
T 3imf_A 150 ----GPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKL-WISEEMAKRTIQSVP---------L 215 (257)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC--------CCSHHHHTTST---------T
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhc-ccCHHHHHHHHhcCC---------C
Confidence 122378999999999999988754 4899999999999988532100 000111111122111 1
Q ss_pred EccccHHHHHHHHHHHHcCCC---CC-cEEecCCCccC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFT 357 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s 357 (447)
..+.+++|+|+++++++.+.. .| .+++.+|..++
T Consensus 216 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 216 GRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQHLH 253 (257)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTSC
T ss_pred CCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCcccC
Confidence 247899999999999997643 35 77777765543
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=187.78 Aligned_cols=221 Identities=12% Similarity=0.031 Sum_probs=154.8
Q ss_pred cCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+++||||+ |+||++++++|+++|++|++++|+.. ..+....... ...+.++.+|+.++.
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA 83 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999999999 99999999999999999999998642 1111111100 123678899998763
Q ss_pred ccCCCEEEEeccCCCC----CCc----ccChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCc
Q 013226 177 LLEVDQIYHLACPASP----VHY----KFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+.++|+||||||.... ..+ ..+....+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 152 (261)
T 2wyu_A 84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK----------- 152 (261)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-----------
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC-----------
Confidence 1368999999997542 111 1234568999999999999999775 34899999977542
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.|++|..... .....+........++
T Consensus 153 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~p~-------- 217 (261)
T 2wyu_A 153 -----VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI--PGFTKMYDRVAQTAPL-------- 217 (261)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGC--TTHHHHHHHHHHHSTT--------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhc--cccHHHHHHHHhcCCC--------
Confidence 11223679999999999999998765 89999999999999853211 1112233333332221
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCccCHHH
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFTMLE 360 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s~~e 360 (447)
..+.+++|+|+++++++... ..| .+++.++..++..|
T Consensus 218 -~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 218 -RRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC--
T ss_pred -CCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCccccCCC
Confidence 13678999999999999653 234 78887775554333
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=181.80 Aligned_cols=205 Identities=12% Similarity=-0.010 Sum_probs=144.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCccccccccCCCceEEEeccccccc-----c-------c-
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L-------L- 178 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~-------~- 178 (447)
++|+|+||||+|+||++++++|+++| ++|++++|+.... +.+... ...++.++.+|+.+.. + .
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~-~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA-TELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC-HHHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHH-HHHHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 57899999999999999999999999 9999999964433 222211 2457889999997753 1 1
Q ss_pred -CCCEEEEeccCCC-CCCcc----cChHHHHHHHHHHHHHHHHHHHHC----------C------CeEEEEeCccccCCC
Q 013226 179 -EVDQIYHLACPAS-PVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----------G------ARFLLTSTSEVYGDP 236 (447)
Q Consensus 179 -~~d~Vih~Ag~~~-~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~----------g------~r~v~~SS~~v~g~~ 236 (447)
++|+||||||... ..... .+....+++|+.++.++++++... + .+||++||...+...
T Consensus 80 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~ 159 (250)
T 1yo6_A 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD 159 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred CCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCC
Confidence 7999999999765 22222 224568999999999998886542 3 499999998765321
Q ss_pred CCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCC
Q 013226 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP 313 (447)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~ 313 (447)
.. +. .+..+...|+.+|++.+.+++.++.++ ++++++++||.+.++... .
T Consensus 160 ~~----~~-----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----------------~-- 212 (250)
T 1yo6_A 160 NT----SG-----SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG----------------K-- 212 (250)
T ss_dssp CC----ST-----TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------
T ss_pred cc----cc-----cccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCC----------------C--
Confidence 10 01 122345789999999999999998765 899999999998875310 0
Q ss_pred eEEecCCCeeEccccHHHHHHHHHHHHcCCC---CCcEEecCCCccC
Q 013226 314 LTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VGPFNLGNPGEFT 357 (447)
Q Consensus 314 ~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g~~~i~~~~~~s 357 (447)
..+++++|+|++++.++.++. .|.|...+++.++
T Consensus 213 ----------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~~ 249 (250)
T 1yo6_A 213 ----------NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPYE 249 (250)
T ss_dssp ----------------HHHHHHHHHHHTTCCGGGTTCEEETTEEECC
T ss_pred ----------CCCCCHHHHHHHHHHHHhcccccCCCeEEEECCcCCC
Confidence 135788999999999998764 4677766655554
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=182.58 Aligned_cols=211 Identities=18% Similarity=0.115 Sum_probs=149.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+....... ..+.+|+.+.. +.
T Consensus 24 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~----------~~~~~Dv~~~~~~~~~~~~~~~~~g 93 (266)
T 3uxy_A 24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD----------LHLPGDLREAAYADGLPGAVAAGLG 93 (266)
T ss_dssp --CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCS----------EECCCCTTSHHHHHHHHHHHHHHHS
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhh----------hccCcCCCCHHHHHHHHHHHHHhcC
Confidence 356889999999999999999999999999999999864432221 22356776542 24
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 94 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~--------------- 158 (266)
T 3uxy_A 94 RLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR--------------- 158 (266)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC---------------
Confidence 7999999999876543332 24567899999999999987 44455 999999987542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccC---CCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCID---DGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.+++|..... ................ ..
T Consensus 159 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~---------p~ 228 (266)
T 3uxy_A 159 -PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTV---------PL 228 (266)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTS---------TT
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcC---------CC
Confidence 22234789999999999999998765 89999999999988632100 0000011112222221 22
Q ss_pred EccccHHHHHHHHHHHHcCCC---CC-cEEecCCCcc
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEF 356 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~ 356 (447)
..+.+++|+|+++++++.+.. .| .+++.+|..+
T Consensus 229 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 265 (266)
T 3uxy_A 229 GRIAEPEDIADVVLFLASDAARYLCGSLVEVNGGKAV 265 (266)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred CCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCEeC
Confidence 347899999999999997642 34 7888776554
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-22 Score=185.18 Aligned_cols=221 Identities=15% Similarity=0.165 Sum_probs=158.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+.. +++.... ..++.++.+|+.+.. +.+
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNI-ARIREEF-GPRVHALRSDIADLNEIAVLGAAAGQTLGA 82 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHh-CCcceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999864322 1111111 246888999998763 236
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+|+||||||......+.+ +....+++|+.|+.++++++... +.+||++||...+. +.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~ 146 (255)
T 4eso_A 83 IDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG----------------GH 146 (255)
T ss_dssp EEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS----------------BC
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC----------------CC
Confidence 999999999865443322 34568999999999999998764 23899999987553 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCC--CchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
.....|+.||++.+.+++.++.++ |+++++|+||.+.+|...... ......+........++ ..+.
T Consensus 147 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~---------~r~~ 217 (255)
T 4eso_A 147 PGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPM---------KRNG 217 (255)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTT---------SSCB
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCC---------CCCc
Confidence 234789999999999999998764 899999999999988542111 11112222222222211 2367
Q ss_pred cHHHHHHHHHHHHcCC--CCC-cEEecCCCccCHH
Q 013226 328 FVSDLVEGLIRLMEGD--HVG-PFNLGNPGEFTML 359 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~--~~g-~~~i~~~~~~s~~ 359 (447)
+++|+|+++++++.+. ..| .+++.+|...++.
T Consensus 218 ~pedvA~~v~~L~s~~~~itG~~i~vdGG~~~~l~ 252 (255)
T 4eso_A 218 TADEVARAVLFLAFEATFTTGAKLAVDGGLGQKLS 252 (255)
T ss_dssp CHHHHHHHHHHHHHTCTTCCSCEEEESTTTTTTBC
T ss_pred CHHHHHHHHHHHcCcCcCccCCEEEECCCccccCc
Confidence 8999999999998752 234 7888777665543
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=182.41 Aligned_cols=214 Identities=14% Similarity=0.059 Sum_probs=154.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
.++++|+++||||+|+||++++++|+++|++|++++|+.....+.+...+ ...++.++.+|+.+..
T Consensus 24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~ 103 (269)
T 4dmm_A 24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER 103 (269)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999885333222222111 1346888999998763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||......... +....+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 171 (269)
T 4dmm_A 104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMG------------ 171 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHC------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCC------------
Confidence 236999999999865443322 345689999999999998863 3344 9999999875421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
......|+.||++.+.+++.++.+ .|+++++|+||.|.++... .. .........+ ..
T Consensus 172 ----~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~----~~---~~~~~~~~~p---------~~ 231 (269)
T 4dmm_A 172 ----NPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTS----EL---AAEKLLEVIP---------LG 231 (269)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSC----HH---HHHHHGGGCT---------TS
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccc----cc---cHHHHHhcCC---------CC
Confidence 112378999999999999999876 4899999999999987531 11 1122222211 12
Q ss_pred ccccHHHHHHHHHHHHcCC----CCC-cEEecCCCcc
Q 013226 325 SFQFVSDLVEGLIRLMEGD----HVG-PFNLGNPGEF 356 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~----~~g-~~~i~~~~~~ 356 (447)
.+.+++|+|+++++++.++ ..| .+++.+|..+
T Consensus 232 r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 232 RYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGLVM 268 (269)
T ss_dssp SCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTSCC
T ss_pred CCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCeec
Confidence 4678999999999999873 234 7888776544
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=180.27 Aligned_cols=204 Identities=19% Similarity=0.154 Sum_probs=150.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----c------cCCCEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L------LEVDQI 183 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~------~~~d~V 183 (447)
+|+|+||||+|+||++++++|+++|++|++++|+.. . ..+.++.+|+.+.. + .++|+|
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~--~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~l 70 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE--G---------EDLIYVEGDVTREEDVRRAVARAQEEAPLFAV 70 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC--S---------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc--c---------cceEEEeCCCCCHHHHHHHHHHHHhhCCceEE
Confidence 678999999999999999999999999999998643 1 13477888887652 2 268999
Q ss_pred EEeccCCCCCCccc--------ChHHHHHHHHHHHHHHHHHHHHC----C------C-eEEEEeCccccCCCCCCCCCCC
Q 013226 184 YHLACPASPVHYKF--------NPVKTIKTNVVGTLNMLGLAKRV----G------A-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 184 ih~Ag~~~~~~~~~--------~~~~~~~~Nv~gt~~ll~aa~~~----g------~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
|||||......... +..+.+++|+.++.++++++.+. + . +||++||...+...
T Consensus 71 i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------- 142 (242)
T 1uay_A 71 VSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ-------- 142 (242)
T ss_dssp EECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC--------
T ss_pred EEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC--------
Confidence 99999764432221 34678999999999999988653 1 1 89999999876421
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
.+...|+.+|++.+.+++.++.+. |++++++|||.++++.... +...+........++.
T Consensus 143 --------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~~~------ 204 (242)
T 1uay_A 143 --------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQG----LPEKAKASLAAQVPFP------ 204 (242)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHT----SCHHHHHHHHTTCCSS------
T ss_pred --------CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhc----cchhHHHHHHhhCCCc------
Confidence 123789999999999999988764 8999999999999875321 1122222333322220
Q ss_pred eeEccccHHHHHHHHHHHHcCCC-CC-cEEecCCCccC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH-VG-PFNLGNPGEFT 357 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~-~g-~~~i~~~~~~s 357 (447)
..+++++|+|+++++++.+.. .| .|++.++..++
T Consensus 205 --~~~~~~~dva~~~~~l~~~~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 205 --PRLGRPEEYAALVLHILENPMLNGEVVRLDGALRMA 240 (242)
T ss_dssp --CSCCCHHHHHHHHHHHHHCTTCCSCEEEESTTCCCC
T ss_pred --ccCCCHHHHHHHHHHHhcCCCCCCcEEEEcCCeecC
Confidence 237899999999999998742 34 78887765543
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=181.05 Aligned_cols=211 Identities=14% Similarity=0.047 Sum_probs=148.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc-----c-------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI-----L-------L 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~-------~ 178 (447)
+++|+++||||+|+||++++++|+++|++|++++|+.. +.....+ ...++.++.+|+.+.. + .
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP---APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFG 78 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC---HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch---HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 46889999999999999999999999999999998654 1111111 1236788899997763 1 2
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 144 (255)
T 2q2v_A 79 GVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVG-------------- 144 (255)
T ss_dssp SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC--------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccC--------------
Confidence 7999999999764433222 24568999999877776654 55665 9999999876532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchH---HHH---H----HHHHhCCCeEE
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVV---SNF---V----AQALRKEPLTV 316 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~---~~~---~----~~~~~~~~~~~ 316 (447)
......|+.+|+..+.+++.++.+. |+++++|+||.+++|... ... ... . .....
T Consensus 145 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~------ 212 (255)
T 2q2v_A 145 --STGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQ----KQIDDRAANGGDPLQAQHDLLA------ 212 (255)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHH----HHHHHHHHHTCCHHHHHHHHHT------
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchh----hhcccccccccchHHHHHHHHh------
Confidence 1123789999999999999998764 899999999999987421 010 000 0 11101
Q ss_pred ecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 317 YGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 317 ~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
.......+++++|+|+++++++..+ ..| .|++.++.
T Consensus 213 --~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 252 (255)
T 2q2v_A 213 --EKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGW 252 (255)
T ss_dssp --TTCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred --ccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCCc
Confidence 1112235899999999999998754 234 77777653
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=181.49 Aligned_cols=211 Identities=14% Similarity=0.106 Sum_probs=146.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++|+++||||+|+||++++++|+++|++|++++|+.+... .....+ ..++.++.+|+.+.. +.++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGA-ATAREL-GDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh-CCceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999998643221 111111 235788899997753 1379
Q ss_pred CEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 181 DQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
|+||||||........ .+....+++|+.|+.+++++ +++.+. +||++||...+..
T Consensus 81 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------------- 144 (254)
T 1hdc_A 81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMG---------------- 144 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccC----------------
Confidence 9999999976433222 23456899999998855544 555555 9999999876532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc-
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ- 327 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i- 327 (447)
......|+.+|++.+.+++.++.+ .|+++++|+||.+++|.. .. . .......+........+.
T Consensus 145 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--------~~----~-~~~~~~~~~~~~p~~~~~~ 211 (254)
T 1hdc_A 145 LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT--------AE----T-GIRQGEGNYPNTPMGRVGN 211 (254)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------HH----H-TCCCSTTSCTTSTTSSCB-
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc--------cc----c-chhHHHHHHhcCCCCCCCC
Confidence 112378999999999999999876 489999999999988631 11 1 111000000101112367
Q ss_pred cHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 328 FVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
+++|+|+++++++.++ ..| .+++.++.
T Consensus 212 ~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 242 (254)
T 1hdc_A 212 EPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242 (254)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhCchhcCCCCCEEEECCCc
Confidence 9999999999999764 235 66666654
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-21 Score=181.38 Aligned_cols=203 Identities=10% Similarity=0.062 Sum_probs=145.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+..... ......+.++.+|+++.. +.
T Consensus 12 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-----~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 86 (266)
T 3p19_A 12 RGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLK-----ALNLPNTLCAQVDVTDKYTFDTAITRAEKIYG 86 (266)
T ss_dssp ---CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHH-----TTCCTTEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-----HhhcCCceEEEecCCCHHHHHHHHHHHHHHCC
Confidence 3467899999999999999999999999999999998633211 112336888999998763 13
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......... +....+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 87 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~-------------- 152 (266)
T 3p19_A 87 PADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKT-------------- 152 (266)
T ss_dssp SEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC--------------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCC--------------
Confidence 6999999999865433332 244679999999999777753 4454 9999999886522
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.||++.+.+++.++.+ .|+++++|+||.|.++.................. .+ ...+
T Consensus 153 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~----~~-------~~r~ 219 (266)
T 3p19_A 153 --FPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWR----VD-------MGGV 219 (266)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHH----HH-------TTCC
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhc----cc-------ccCC
Confidence 222378999999999999999876 4899999999999987543211111111111100 00 1237
Q ss_pred ccHHHHHHHHHHHHcCCCC
Q 013226 327 QFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~~ 345 (447)
++++|+|++++++++++..
T Consensus 220 ~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 220 LAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp BCHHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 8999999999999998765
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-22 Score=188.28 Aligned_cols=218 Identities=14% Similarity=0.094 Sum_probs=153.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc-----c------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI-----L------ 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~------ 177 (447)
..+++|+|+||||+|+||++++++|+++|++|++++|+.....+.+...+ ...++.++.+|+.+.. +
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 96 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 96 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999983222211111111 1346788999998763 1
Q ss_pred -cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCcccc-CCCCCCCCCCCcCCC
Q 013226 178 -LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVY-GDPLQHPQAETYWGN 248 (447)
Q Consensus 178 -~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~-g~~~~~~~~e~~~~~ 248 (447)
.++|+||||||......... +....+++|+.|+.++++++.+. +.+||++||...+ ..
T Consensus 97 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~------------- 163 (274)
T 1ja9_A 97 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTG------------- 163 (274)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCS-------------
T ss_pred cCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCC-------------
Confidence 26999999999764332221 24568999999999999998765 4599999998875 32
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCC--------chH-HHHHHHHHhCCCeEE
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDG--------RVV-SNFVAQALRKEPLTV 316 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~--------~~~-~~~~~~~~~~~~~~~ 316 (447)
......|+.+|++.|.+++.++.++ ++++++++||.++++....... ... ..+......+.
T Consensus 164 ---~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 236 (274)
T 1ja9_A 164 ---IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMN---- 236 (274)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTS----
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhcC----
Confidence 1123679999999999999998765 8999999999998764210000 000 11222222221
Q ss_pred ecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 317 YGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 317 ~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
....+++++|+|++++.++.++. .| .|++.++
T Consensus 237 -----~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 237 -----PLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -----CCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 22358899999999999997542 34 7888765
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=187.94 Aligned_cols=230 Identities=16% Similarity=0.080 Sum_probs=148.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc----c--CCCceEEEecccccccc---------
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH----F--GNPRFELIRHDVVEPIL--------- 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~----~--~~~~v~~~~~D~~~~~~--------- 177 (447)
+++|+++||||+|+||++++++|+++|++|++++|+...+....... . ...++.++.+|++++..
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998644333221111 1 13468899999987631
Q ss_pred ---cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCc
Q 013226 178 ---LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 178 ---~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
.++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+...
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~--------- 153 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGT--------- 153 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCC---------
Confidence 37999999999764433322 24568899999999999988 55555 99999998865321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCC---CchHHHHHHHHHhCCCeEEecC
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDD---GRVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
......|+.||++.|.+++.++.+ .|+++++|+||.+.++...... ...... ...............
T Consensus 154 ------~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 226 (324)
T 3u9l_A 154 ------PPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHAR-QAEYEAGPNAGLGEE 226 (324)
T ss_dssp ------CSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHH-HHHHHHTTTTTHHHH
T ss_pred ------CCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHH-HHhhccccccCCHHH
Confidence 112367999999999999999877 5899999999999865421110 000011 111111000000000
Q ss_pred C-C----eeEccccHHHHHHHHHHHHcCCC--CCcEEecCCCccCH
Q 013226 320 G-K----QTRSFQFVSDLVEGLIRLMEGDH--VGPFNLGNPGEFTM 358 (447)
Q Consensus 320 ~-~----~~~~~i~v~D~a~ai~~~l~~~~--~g~~~i~~~~~~s~ 358 (447)
. . ...+..+++|+|++++.+++.+. .....+.++....+
T Consensus 227 ~~~~~~~l~~~~~~p~~vA~aiv~~~~~~~~~~~~~~~~gp~~~~~ 272 (324)
T 3u9l_A 227 IKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPFRVHVDPAEDGA 272 (324)
T ss_dssp HHHHHHHTSCTTCCTHHHHHHHHHHHTSCTTCCCSEEEECTTCCSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeCCcchHH
Confidence 0 0 00112578999999999998773 23444455555553
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-21 Score=180.84 Aligned_cols=215 Identities=14% Similarity=0.067 Sum_probs=151.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc-----c-------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI-----L------- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~------- 177 (447)
.+++|+|+||||+|+||++++++|+++|++|++++|+.....+.+...+ ...++.++.+|+.+.. +
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999983222111111111 1246788999997753 1
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||........ .+....+++|+.++.++++++.+ .+ .+||++||...+.
T Consensus 84 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~------------- 150 (261)
T 1gee_A 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------- 150 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC-------------
Confidence 2799999999976543222 23456899999999988887644 34 3999999987542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchH--HHHHHHHHhCCCeEEecCCCe
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVV--SNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+..+...|+.+|++.+.+++.++.+. +++++++|||.+++|... ... ..+........+
T Consensus 151 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~--------- 214 (261)
T 1gee_A 151 ---PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA----EKFADPEQRADVESMIP--------- 214 (261)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGH----HHHHSHHHHHHHHTTCT---------
T ss_pred ---CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhh----hcccChhHHHHHHhcCC---------
Confidence 22234789999999999999988764 899999999999987531 010 112222222111
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
...+++++|+|+++++++.+. ..| .+++.++..
T Consensus 215 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 215 MGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCCcc
Confidence 124789999999999998753 234 777776543
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=180.03 Aligned_cols=213 Identities=19% Similarity=0.167 Sum_probs=145.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC-CCCccccccccCCCceEEEeccccccc------------cc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF-TGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~-~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+. +...+.+. . ...++.++.+|+.++. +.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIR-N-LGRRVLTVKCDVSQPGDVEAFGKQVISTFG 81 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-H-TTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHH-h-cCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999965 22111111 1 1246888999997763 24
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......... +....+++|+.|+.+++++ +++.+. +||++||...+..
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 147 (249)
T 2ew8_A 82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLK-------------- 147 (249)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSC--------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccC--------------
Confidence 7999999999765433222 2456899999998888877 445555 9999999886532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.||++.+.+++.++.+. |+++++|+||.+.++.... ...... ...... .. .....+
T Consensus 148 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---~~~~~~-~~~~~~-~~------~~~~~~ 214 (249)
T 2ew8_A 148 --IEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEA---SALSAM-FDVLPN-ML------QAIPRL 214 (249)
T ss_dssp --CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----------------------C-TT------SSSCSC
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchh---ccccch-hhHHHH-hh------CccCCC
Confidence 1223789999999999999998764 8999999999999875310 000000 000010 00 011247
Q ss_pred ccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 327 QFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
.+++|+|+++++++..+ ..| .+++.++
T Consensus 215 ~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG 245 (249)
T 2ew8_A 215 QVPLDLTGAAAFLASDDASFITGQTLAVDGG 245 (249)
T ss_dssp CCTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred CCHHHHHHHHHHHcCcccCCCCCcEEEECCC
Confidence 89999999999999753 335 6666654
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-21 Score=181.21 Aligned_cols=211 Identities=16% Similarity=0.111 Sum_probs=151.6
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------c
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~ 177 (447)
....++|+||||||+|+||++++++|+++|++|++++|+..... ..+..+.+|+++.. +
T Consensus 9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (269)
T 3vtz_A 9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV---------NVSDHFKIDVTNEEEVKEAVEKTTKKY 79 (269)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT---------TSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc---------CceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 35678999999999999999999999999999999998643321 24567888987763 2
Q ss_pred cCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|+||||||.......... ....+++|+.|+.++++++.. .+. +||++||...+..
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 146 (269)
T 3vtz_A 80 GRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAA------------- 146 (269)
T ss_dssp SCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSB-------------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccC-------------
Confidence 369999999998654433332 345788999999999888643 444 9999999886632
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCcc-------CCCchHHHHHHHHHhCCCeEEecC
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCI-------DDGRVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
......|+.||++.+.+++.++.++ ++++.+|+||.|+++.... .................
T Consensus 147 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 216 (269)
T 3vtz_A 147 ---TKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQH------- 216 (269)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHS-------
T ss_pred ---CCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcC-------
Confidence 2223789999999999999998876 8999999999998763210 00001112222222211
Q ss_pred CCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
....+.+++|+|+++++++... ..| .+++.+|.
T Consensus 217 --p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 253 (269)
T 3vtz_A 217 --PMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGGL 253 (269)
T ss_dssp --TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --CCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCCc
Confidence 1234678999999999999754 234 77777654
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=182.53 Aligned_cols=211 Identities=13% Similarity=0.098 Sum_probs=149.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc-----c------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI-----L------ 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~-----~------ 177 (447)
++++|+++||||+|+||++++++|+++|++|++++|+..... .+...+ ...++.++.+|+.+.. +
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAK-AVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL 82 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999998643211 111111 1236788899987753 1
Q ss_pred -cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccc-cCCCCCCCCCCCcC
Q 013226 178 -LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEV-YGDPLQHPQAETYW 246 (447)
Q Consensus 178 -~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v-~g~~~~~~~~e~~~ 246 (447)
.++|+||||||........ .+....+++|+.|+.++++++ ++.+. +||++||... ++.+
T Consensus 83 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~---------- 152 (248)
T 2pnf_A 83 VDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNV---------- 152 (248)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCCT----------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCCC----------
Confidence 3799999999976533222 234568999999997776654 44565 9999999864 3321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
+...|+.+|++.+.+++.++.+. ++++++++||.++++.... +...+........+ .
T Consensus 153 -------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~ 212 (248)
T 2pnf_A 153 -------GQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAV----LSEEIKQKYKEQIP---------L 212 (248)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG----SCHHHHHHHHHTCT---------T
T ss_pred -------CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhh----ccHHHHHHHHhcCC---------C
Confidence 13689999999999999988653 8999999999999875321 11122222222211 1
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
..+++++|+|++++.++.+. ..| .|++.++
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 213 GRFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 24789999999999998753 234 7888765
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=183.54 Aligned_cols=221 Identities=15% Similarity=0.095 Sum_probs=152.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCC---------cc---cccccc--CCCceEEEeccccccc-
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGK---------KD---NLIHHF--GNPRFELIRHDVVEPI- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~---------~~---~~~~~~--~~~~v~~~~~D~~~~~- 176 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+.. .+ +..... ...++.++.+|+.++.
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 57899999999999999999999999999999999853211 11 111111 1346888999998763
Q ss_pred -----------ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCC--CeEEEEeCccccCC
Q 013226 177 -----------LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGD 235 (447)
Q Consensus 177 -----------~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g--~r~v~~SS~~v~g~ 235 (447)
+.++|+||||||........+ +....+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~- 170 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK- 170 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc-
Confidence 236999999999865443322 245688999999999998873 333 3899999987542
Q ss_pred CCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHH-HhC
Q 013226 236 PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQA-LRK 311 (447)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~-~~~ 311 (447)
+......|+.||++.+.+++.++.+ .|+++++|+||.+++|... .......+... ...
T Consensus 171 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~---~~~~~~~~~~~~~~~ 232 (280)
T 3pgx_A 171 ---------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIE---PEAMMEIFARHPSFV 232 (280)
T ss_dssp ---------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCC---HHHHHHHHHHCGGGG
T ss_pred ---------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccc---hhhhhhhhhcCchhh
Confidence 1222478999999999999999876 5899999999999998642 11111111110 000
Q ss_pred CCeEEecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 312 EPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 312 ~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
..+... ..... .+++++|+|+++++++.... .| .+++.+|
T Consensus 233 ~~~~~~-~~~~~-r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 276 (280)
T 3pgx_A 233 HSFPPM-PVQPN-GFMTADEVADVVAWLAGDGSGTLTGTQIPVDKG 276 (280)
T ss_dssp GGSCCB-TTBCS-SCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTT
T ss_pred hhhhhc-ccCCC-CCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 111111 11112 48899999999999997543 35 6666654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=183.98 Aligned_cols=215 Identities=11% Similarity=0.044 Sum_probs=152.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc-----c-------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI-----L------- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-----~------- 177 (447)
.+++|+|+||||+|+||++++++|+++|++|++++|+.....+.+...+ ...++.++.+|+.+.. +
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKF 83 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999999996222222211111 1346889999998763 1
Q ss_pred cCCCEEEEeccC-CCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC------CeEEEEeCccccCCCCCCCCC
Q 013226 178 LEVDQIYHLACP-ASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG------ARFLLTSTSEVYGDPLQHPQA 242 (447)
Q Consensus 178 ~~~d~Vih~Ag~-~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g------~r~v~~SS~~v~g~~~~~~~~ 242 (447)
.++|+||||||. ........ .....+++|+.++.++++++.+ .+ .+||++||...+..
T Consensus 84 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------- 156 (258)
T 3afn_B 84 GGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG------- 156 (258)
T ss_dssp SSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC-------
T ss_pred CCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC-------
Confidence 279999999996 33222221 2456889999999998886532 22 48999999876531
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecC
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
+..+...|+.+|++.|.+++.++.+. +++++++|||.++++..... ...+......+.+
T Consensus 157 --------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~------ 218 (258)
T 3afn_B 157 --------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK----TQDVRDRISNGIP------ 218 (258)
T ss_dssp --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC----CHHHHHHHHTTCT------
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc----CHHHHHHHhccCC------
Confidence 11223789999999999999988765 89999999999999864211 1233333333322
Q ss_pred CCeeEccccHHHHHHHHHHHHcCC----CCC-cEEecCCC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGD----HVG-PFNLGNPG 354 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~----~~g-~~~i~~~~ 354 (447)
...+++++|+|++++.++.++ ..| .|++.++.
T Consensus 219 ---~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 219 ---MGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ 255 (258)
T ss_dssp ---TCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred ---CCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence 135789999999999998753 235 78887654
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=182.88 Aligned_cols=220 Identities=15% Similarity=0.142 Sum_probs=154.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+ ..... ..++.++.+|+++.. +.
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVR-VANEI-GSKAFGVRVDVSSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHH-CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 45688999999999999999999999999999999986432221 11111 246788999998763 23
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......... .....+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 165 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS--------------- 165 (277)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc---------------
Confidence 6999999999765443322 245578899999999888874 3344 999999988652
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCcc--CCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.||++.+.+++.++.++ |+++.+|+||.+.+|.... ................. ...
T Consensus 166 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 235 (277)
T 4dqx_A 166 -AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARA---------VMD 235 (277)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTS---------TTC
T ss_pred -CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcC---------ccc
Confidence 22234789999999999999998765 8999999999998753100 00000011111122211 123
Q ss_pred ccccHHHHHHHHHHHHcCCC---CC-cEEecCCCccC
Q 013226 325 SFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFT 357 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s 357 (447)
.+.+++|+|+++++++.+.. .| .+++.+|..++
T Consensus 236 r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 236 RMGTAEEIAEAMLFLASDRSRFATGSILTVDGGSSIG 272 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSSSC
T ss_pred CCcCHHHHHHHHHHHhCCccCCCcCCEEEECCchhhh
Confidence 46789999999999997542 34 77777665543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-22 Score=185.62 Aligned_cols=214 Identities=17% Similarity=0.155 Sum_probs=128.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+ +...+ ...++.++.+|+++..
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEA-VAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999986432221 11111 2346888999998763
Q ss_pred ccCCCEEEEeccCCCCCC-------cccChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCC
Q 013226 177 LLEVDQIYHLACPASPVH-------YKFNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~-------~~~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+.++|+||||||...... ..+.....+++|+.|+.++++++ ++.+. +||++||...|..
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 154 (253)
T 3qiv_A 84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWLY--------- 154 (253)
T ss_dssp HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---------------
T ss_pred cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccCC---------
Confidence 137999999999742111 11224568999999977766654 44444 9999999886521
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
...|+.||++.+.+++.++.++ ++++.+++||.+++|..... ....+......+.+
T Consensus 155 ----------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~~~-------- 213 (253)
T 3qiv_A 155 ----------SNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTT---TPKEMVDDIVKGLP-------- 213 (253)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC------------------------------------
T ss_pred ----------CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhc---CcHHHHHHHhccCC--------
Confidence 2569999999999999998875 79999999999998753211 11112222222211
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCcc
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEF 356 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~ 356 (447)
...+.+++|+|+++++++.+.. .| .|++.+|..+
T Consensus 214 -~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~~~ 251 (253)
T 3qiv_A 214 -LSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGGQII 251 (253)
T ss_dssp -------CCHHHHHHHHHHSGGGTTCCSCEEEC------
T ss_pred -CCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCeec
Confidence 2235678999999999997542 34 8888776544
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=183.99 Aligned_cols=221 Identities=16% Similarity=0.151 Sum_probs=149.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---cccccCCCceEEEeccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIHHFGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~----------- 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+. +.......++.++.+|+.+..
T Consensus 9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 88 (267)
T 1iy8_A 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 88 (267)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999864322111 111111346888999998763
Q ss_pred -ccCCCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCc
Q 013226 177 -LLEVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+.++|+||||||.... .... .+....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------- 157 (267)
T 1iy8_A 89 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR----------- 157 (267)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-----------
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc-----------
Confidence 1369999999997543 2222 234568899999988766654 44454 999999987542
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC----CCchHHHHHHHHHhCCCeEEec
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID----DGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
+......|+.+|++.+.+++.++.+ .|+++++|+||.++++..... ................+
T Consensus 158 -----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 227 (267)
T 1iy8_A 158 -----GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNP----- 227 (267)
T ss_dssp -----BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCT-----
T ss_pred -----CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccCC-----
Confidence 1122378999999999999998876 489999999999988632100 00001111111111111
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
...+.+++|+|+++++++.++ ..| .+++.+|...
T Consensus 228 ----~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~~ 265 (267)
T 1iy8_A 228 ----SKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSA 265 (267)
T ss_dssp ----TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTT
T ss_pred ----CCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCccc
Confidence 124789999999999998754 235 6777766443
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-21 Score=181.68 Aligned_cols=208 Identities=15% Similarity=0.097 Sum_probs=149.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----c-------cC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L-------LE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~-------~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... ....... ..+.++.+|+.++. + .+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 81 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGK-AMAAELA-DAARYVHLDVTQPAQWKAAVDTAVTAFGG 81 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHTG-GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhh-cCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999998643221 1111111 24788899997753 1 27
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||........ .+....+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 146 (260)
T 1nff_A 82 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAG--------------- 146 (260)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCC---------------
Confidence 99999999976543222 234568999999997666654 44555 9999999886532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
..+...|+.+|++.+.+++.++.+ .|++++++|||.++++..... ...+. ......+.
T Consensus 147 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--------------~~~~~----~~~~~~~~ 207 (260)
T 1nff_A 147 -TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV--------------PEDIF----QTALGRAA 207 (260)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS--------------CTTCS----CCSSSSCB
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccccc--------------hhhHH----hCccCCCC
Confidence 112368999999999999998876 589999999999998753100 00000 00113478
Q ss_pred cHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 328 FVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
+++|+|+++++++..+ ..| .+++.++..
T Consensus 208 ~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 208 EPVEVSNLVVYLASDESSYSTGAEFVVDGGTV 239 (260)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CHHHHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 9999999999998753 234 788877644
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=184.96 Aligned_cols=234 Identities=17% Similarity=0.113 Sum_probs=157.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc--------c---ccc--cCCCceEEEecccccccc-
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN--------L---IHH--FGNPRFELIRHDVVEPIL- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~--------~---~~~--~~~~~v~~~~~D~~~~~~- 177 (447)
.+++|++|||||+|+||++++++|+++|++|++++|+....... + ... ....++.++.+|+.+...
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 56889999999999999999999999999999999863322111 0 000 123478899999987631
Q ss_pred -----------cCCCEEEEeccCCCCCC--cccChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCC
Q 013226 178 -----------LEVDQIYHLACPASPVH--YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQ 241 (447)
Q Consensus 178 -----------~~~d~Vih~Ag~~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~ 241 (447)
.++|+||||||...... ..++....+++|+.|+.++++++... +.+||++||...+......+.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~ 166 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPG 166 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccccc
Confidence 36999999999865431 12235678999999999999998764 239999999885532212222
Q ss_pred CCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhC---CCe-
Q 013226 242 AETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRK---EPL- 314 (447)
Q Consensus 242 ~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~---~~~- 314 (447)
.+. .+......|+.||++.+.+++.++.++ |+++.+|+||.|.++.... .. ........ ...
T Consensus 167 ~~~-----~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~---~~---~~~~~~~~~~~~~~~ 235 (287)
T 3pxx_A 167 AGG-----PQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNS---AP---MYRQFRPDLEAPSRA 235 (287)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSS---HH---HHHHHCTTSSSCCHH
T ss_pred ccc-----cCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccc---cc---hhhhhccccccchhH
Confidence 222 222334689999999999999998775 8999999999999876421 00 00000000 000
Q ss_pred ----EEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 315 ----TVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 315 ----~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
...........+.+++|+|+++++++.+. ..| ++++.+|..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~~~ 285 (287)
T 3pxx_A 236 DALLAFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAGAML 285 (287)
T ss_dssp HHHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHhhhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECchhhh
Confidence 00000011145889999999999999754 235 7788776544
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.3e-22 Score=187.69 Aligned_cols=216 Identities=16% Similarity=0.055 Sum_probs=152.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+ ..... ..++.++.+|+++.. +.+
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 103 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADA-AATKI-GCGAAACRVDVSDEQQIIAMVDACVAAFGG 103 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHH-CSSCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHc-CCcceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5788999999999999999999999999999999986432221 11112 346788999998763 236
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||........+ +....+++|+.|+.++++++.. .+. +||++||...+.
T Consensus 104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~---------------- 167 (277)
T 3gvc_A 104 VDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV---------------- 167 (277)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc----------------
Confidence 999999999865433322 3456899999999999888643 444 899999987542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCC--eEE-ecC---CC
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP--LTV-YGD---GK 321 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~---~~ 321 (447)
+......|+.||++.+.+++.++.+ .|+++++|+||.|++|.. .. ...... ... ... ..
T Consensus 168 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~--------~~----~~~~~~~~~~~~~~~~~~~~ 235 (277)
T 3gvc_A 168 AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ--------QT----AMAMFDGALGAGGARSMIAR 235 (277)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------HH----HHTCC------CCHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH--------HH----hhhcchhhHHHHhhhhhhhc
Confidence 2223478999999999999998876 589999999999998631 11 111000 000 000 00
Q ss_pred eeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCccC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFT 357 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s 357 (447)
....+.+++|+|+++++++.+. ..| ++++.+|...+
T Consensus 236 ~~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 236 LQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGTIAA 275 (277)
T ss_dssp HHSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGS
T ss_pred cccCCCCHHHHHHHHHHHcCCccCCccCcEEEECCcchhc
Confidence 1124688999999999999754 234 77887665443
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-21 Score=180.10 Aligned_cols=215 Identities=14% Similarity=0.070 Sum_probs=153.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-ecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVV-DNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
++|++|||||+|+||++++++|+++|++|+++ +|+... .+.....+ ...++.++.+|+++.. +.
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKA-ALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG 81 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999997 554321 11111111 1346889999998763 23
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~--------------- 146 (258)
T 3oid_A 82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIR--------------- 146 (258)
T ss_dssp CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTS---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCC---------------
Confidence 6899999999755433322 24458999999999998887 34454 999999987542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
+......|+.||++.+.+++.++.++ |+++.+|+||.+.++....... ...+........++ ..+
T Consensus 147 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~---------~r~ 214 (258)
T 3oid_A 147 -YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPN--REDLLEDARQNTPA---------GRM 214 (258)
T ss_dssp -BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTT--HHHHHHHHHHHCTT---------SSC
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhccc--CHHHHHHHHhcCCC---------CCC
Confidence 22234789999999999999998764 8999999999999875321111 12223333332221 247
Q ss_pred ccHHHHHHHHHHHHcCCC---CC-cEEecCCCcc
Q 013226 327 QFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEF 356 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~ 356 (447)
.+++|+|+++++++.+.. .| .+++.+|...
T Consensus 215 ~~~~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 248 (258)
T 3oid_A 215 VEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRSL 248 (258)
T ss_dssp BCHHHHHHHHHHHTSSTTTTCCSCEEEESTTGGG
T ss_pred cCHHHHHHHHHHHhCcccCCccCCEEEECCCccC
Confidence 889999999999998653 34 7788776543
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=183.59 Aligned_cols=223 Identities=14% Similarity=0.071 Sum_probs=155.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
.++++|+|+||||+|+||++++++|+++|++|++++|+.....+...... ...++.++.+|+.+..
T Consensus 10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 89 (265)
T 1h5q_A 10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 89 (265)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999996443222111110 1246888999997753
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----C--CeEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----G--ARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g--~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+..+|+||||||......... +....+++|+.++.++++++.+. + .+||++||...+..... ..
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----~~-- 163 (265)
T 1h5q_A 90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS----SL-- 163 (265)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE----ET--
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc----cc--
Confidence 235899999999765433222 24567899999999999987543 2 48999999875432110 00
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
.+..+...|+.+|++.+.+++.++.+. +++++++|||.++++..... ...+........++
T Consensus 164 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~~--------- 227 (265)
T 1h5q_A 164 ---NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM----DKKIRDHQASNIPL--------- 227 (265)
T ss_dssp ---TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS----CHHHHHHHHHTCTT---------
T ss_pred ---cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc----chhHHHHHHhcCcc---------
Confidence 122335789999999999999998764 89999999999998753211 12222222222111
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
..+++++|+|+++++++.++ ..| .|++.++..
T Consensus 228 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 228 NRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQL 263 (265)
T ss_dssp SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred cCCCCHHHHHHHHHhhccCchhcCcCcEEEecCCEe
Confidence 23788999999999999754 234 788876643
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=185.01 Aligned_cols=222 Identities=14% Similarity=0.066 Sum_probs=156.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|++|||||+|+||++++++|+++|++|++++|+..... +....+ ...++.++.+|+++.. +
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALA-ELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF 83 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHH-HHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999998643221 111111 2346888999998763 2
Q ss_pred cCCCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||.... .... ++....+++|+.|+.++++++.. .+. +||++||...+..
T Consensus 84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 151 (280)
T 3tox_A 84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA------------ 151 (280)
T ss_dssp SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB------------
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC------------
Confidence 369999999997532 2221 23556899999999999988643 344 9999999876521
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.|.+|.....................+ ..
T Consensus 152 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p---------~~ 219 (280)
T 3tox_A 152 ---GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHA---------LK 219 (280)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTST---------TS
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCc---------cC
Confidence 11223789999999999999998775 8999999999999986421000001122222222221 12
Q ss_pred ccccHHHHHHHHHHHHcCC---CCC-cEEecCCCccCH
Q 013226 325 SFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFTM 358 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s~ 358 (447)
.+.+++|+|+++++++.+. ..| ++++.+|..++.
T Consensus 220 r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~~~ 257 (280)
T 3tox_A 220 RIARPEEIAEAALYLASDGASFVTGAALLADGGASVTK 257 (280)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCC
T ss_pred CCcCHHHHHHHHHHHhCccccCCcCcEEEECCCccccc
Confidence 4788999999999999764 234 788887766554
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-21 Score=182.00 Aligned_cols=215 Identities=14% Similarity=0.059 Sum_probs=150.0
Q ss_pred ccCCCCeEEEEcCCC-hhHHHHHHHHHhCCCeEEEEecCCCCCcccccc--ccCCCceEEEeccccccc-----------
Q 013226 111 LQRKSLRILVTGGAG-FVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH--HFGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG-~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~----------- 176 (447)
..+++|+++||||+| +||++++++|+++|++|++++|+.....+.... .....++.++.+|+.+..
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 457899999999997 799999999999999999999864432211111 112347899999998763
Q ss_pred -ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC-----CC-eEEEEeCccccCCCCCCCCCCCc
Q 013226 177 -LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV-----GA-RFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~-----g~-r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+.++|+||||||......... +....+++|+.++.++++++... +. +||++||...+.
T Consensus 98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~----------- 166 (266)
T 3o38_A 98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR----------- 166 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC-----------
T ss_pred HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC-----------
Confidence 136899999999765443322 24568999999999999987653 33 899999987542
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+..+...|+.+|++.+.+++.++.+ .|+++.+|+||.+.++..... ........ +.....
T Consensus 167 -----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~---------~~~~~~ 229 (266)
T 3o38_A 167 -----AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKT---SSSELLDR---------LASDEA 229 (266)
T ss_dssp -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-----------------------------CCT
T ss_pred -----CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhcc---CcHHHHHH---------HHhcCC
Confidence 2223478999999999999999876 589999999999987642110 00111111 111122
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
...+.+++|+|+++++++.+. ..| .+++.+|
T Consensus 230 ~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG 264 (266)
T 3o38_A 230 FGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQ 264 (266)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred cCCCCCHHHHHHHHHHHcCccccCccCCEEEEcCC
Confidence 345789999999999999754 234 6777654
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-22 Score=189.28 Aligned_cols=219 Identities=16% Similarity=0.009 Sum_probs=153.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+ ....+ ...++.++.+|+.+..
T Consensus 10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (260)
T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDR-TVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNL 88 (260)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999986432211 11111 1236788889987653
Q ss_pred ccCCCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 LLEVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|+||||||.... .... .+....+++|+.++.++++++. +.+. +||++||...+..
T Consensus 89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 157 (260)
T 2zat_A 89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHP----------- 157 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC-----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCC-----------
Confidence 1379999999997531 1111 1245689999999998888764 4555 9999999887632
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
..+...|+.+|++.+.+++.++.+. |+++++++||.+.++........ ........... ..
T Consensus 158 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~---------~~ 221 (260)
T 2zat_A 158 -----FPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMD--KARKEYMKESL---------RI 221 (260)
T ss_dssp -----CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSS--HHHHHHHHHHH---------TC
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccC--hHHHHHHHhcC---------CC
Confidence 1223789999999999999998764 89999999999998742100000 00001111100 11
Q ss_pred EccccHHHHHHHHHHHHcCCC---CC-cEEecCCCccC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFT 357 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s 357 (447)
..+.+++|+|+++++++.++. .| ++++.+|..++
T Consensus 222 ~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 222 RRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGTASR 259 (260)
T ss_dssp SSCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTTCCCC
T ss_pred CCCCCHHHHHHHHHHHcCcccCCccCCEEEECCCcccc
Confidence 247899999999999987642 34 88998877655
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-22 Score=188.38 Aligned_cols=212 Identities=16% Similarity=0.102 Sum_probs=150.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLR-TTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY 97 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999998643221 111111 1236788999997753 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC------CC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV------GA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~------g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
.++|+||||||......... +....+++|+.|+.++++++.+. +. +||++||...+..
T Consensus 98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~----------- 166 (277)
T 2rhc_B 98 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQG----------- 166 (277)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSC-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccC-----------
Confidence 36999999999765433222 24568999999999999987665 44 9999999875421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchH-----------HHHHHHHHhCC
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVV-----------SNFVAQALRKE 312 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~-----------~~~~~~~~~~~ 312 (447)
......|+.+|++.+.+++.++.+. |+++++|+||.++++... ... ...........
T Consensus 167 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (277)
T 2rhc_B 167 -----VVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAA----SVREHYSDIWEVSTEEAFDRITARV 237 (277)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHH----HHHHHHHHHHTCCHHHHHHHHHHHS
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhh----hhhhhcccccccchHHHHHHHHhcC
Confidence 1223789999999999999998764 799999999999886321 010 00111111111
Q ss_pred CeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 313 PLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 313 ~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
....+++++|+|+++++++.++ ..| .+++.++
T Consensus 238 ---------p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG 273 (277)
T 2rhc_B 238 ---------PIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 273 (277)
T ss_dssp ---------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---------CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 1134789999999999999764 234 7777665
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=179.14 Aligned_cols=213 Identities=14% Similarity=0.060 Sum_probs=146.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQ 182 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~ 182 (447)
...++|+||||||+|+||++++++|+++|++|++++|+..... .+.... ...+.+..+|+.+.. ..++|+
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 87 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLK-SLGNAL-KDNYTIEVCNLANKEECSNLISKTSNLDI 87 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH-CSSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHHHh-ccCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence 4568899999999999999999999999999999998643221 111111 236788888987653 236999
Q ss_pred EEEeccCCCCCC----cccChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 183 IYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 183 Vih~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
||||||...... ...+....+++|+.|+.++++++. +.+. +||++||...+.. ..
T Consensus 88 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------------~~ 151 (249)
T 3f9i_A 88 LVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAG----------------NP 151 (249)
T ss_dssp EEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--C----------------CS
T ss_pred EEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccC----------------CC
Confidence 999999765332 223567899999999999988764 3344 9999999876532 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
....|+.||++.+.+++.++.+ .|+++.+++||.+.++..... ............+ ...+.+++
T Consensus 152 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~~---------~~~~~~~~ 218 (249)
T 3f9i_A 152 GQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKL----NEKQREAIVQKIP---------LGTYGIPE 218 (249)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------C----CHHHHHHHHHHCT---------TCSCBCHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCccccc----CHHHHHHHHhcCC---------CCCCcCHH
Confidence 3378999999999999999876 489999999999998753211 1222222222211 23478899
Q ss_pred HHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 331 DLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 331 D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
|+|+++++++.++. .| .+++.+|.
T Consensus 219 dva~~~~~l~s~~~~~~tG~~~~vdgG~ 246 (249)
T 3f9i_A 219 DVAYAVAFLASNNASYITGQTLHVNGGM 246 (249)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred HHHHHHHHHcCCccCCccCcEEEECCCE
Confidence 99999999997642 34 77777654
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-22 Score=187.77 Aligned_cols=217 Identities=13% Similarity=0.022 Sum_probs=153.6
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc-----------
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~----------- 176 (447)
...+++|+++||||+|+||++++++|+++|++|++++|+.....+ +...+ ...++.++.+|+.+..
T Consensus 23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (270)
T 3ftp_A 23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEG-IGAAFKQAGLEGRGAVLNVNDATAVDALVESTLK 101 (270)
T ss_dssp CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999986432211 11111 1235778889997763
Q ss_pred -ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 -LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|+||||||......... +....+++|+.|+.++++++.. .+. +||++||...+..
T Consensus 102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 170 (270)
T 3ftp_A 102 EFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAG----------- 170 (270)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC-----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCC-----------
Confidence 236999999999765443222 3456899999999999988743 333 8999999875421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.||++.+.+++.++.+ .|+++++|+||.|.++.... +............+ .
T Consensus 171 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~p---------~ 232 (270)
T 3ftp_A 171 -----NPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKG----LPQEQQTALKTQIP---------L 232 (270)
T ss_dssp -----CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHH----SCHHHHHHHHTTCT---------T
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhh----cCHHHHHHHHhcCC---------C
Confidence 122378999999999999999876 48999999999998763211 00112222222211 2
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
..+.+++|+|+++++++... ..| ++++.+|..+
T Consensus 233 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 233 GRLGSPEDIAHAVAFLASPQAGYITGTTLHVNGGMFM 269 (270)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred CCCCCHHHHHHHHHHHhCCCcCCccCcEEEECCCccc
Confidence 34789999999999998643 234 7888776544
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=182.79 Aligned_cols=203 Identities=14% Similarity=0.117 Sum_probs=147.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+... ..++.++.+|+.+.. +.+
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 74 (264)
T 2dtx_A 5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG----------EAKYDHIECDVTNPDQVKASIDHIFKEYGS 74 (264)
T ss_dssp GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC----------SCSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc----------CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999999999999986432 235778889987753 136
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||........ .+....+++|+.|+.++++++.+ .+. +||++||...+..
T Consensus 75 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 139 (264)
T 2dtx_A 75 ISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASII--------------- 139 (264)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSC---------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccC---------------
Confidence 99999999976543322 23556899999999998888754 343 9999999876532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhhC--CcEEEEeeccccCCCCccCCCchH-------H----HHHHHHHhCCCeEEe
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGLG--IEARIARIFNTYGPRMCIDDGRVV-------S----NFVAQALRKEPLTVY 317 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~--i~~~ivRp~~i~Gp~~~~~~~~~~-------~----~~~~~~~~~~~~~~~ 317 (447)
..+...|+.||++.+.+++.++.+++ +++++|+||.+.++... .+. . ..........
T Consensus 140 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----- 209 (264)
T 2dtx_A 140 -TKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVR----KAAELEVGSDPMRIEKKISEWGHEH----- 209 (264)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHH----HHHHHHHCSCHHHHHHHHHHHHHHS-----
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchh----hhhhcccccCchhhHHHHHHHHhcC-----
Confidence 12237899999999999999987765 99999999999875310 000 0 1111111111
Q ss_pred cCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 318 GDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 318 ~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
....+++++|+|+++++++..+ ..| .+++.++
T Consensus 210 ----p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 245 (264)
T 2dtx_A 210 ----PMQRIGKPQEVASAVAFLASREASFITGTCLYVDGG 245 (264)
T ss_dssp ----TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence 1124789999999999999754 234 6667655
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=183.73 Aligned_cols=216 Identities=15% Similarity=0.060 Sum_probs=143.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------ 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+.....+ ...++.++.+|+.+...
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF 105 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999974332222221111 23478899999988632
Q ss_pred cCCCEEEEeccCCC--CCCcc----cChHHHHHHHHHHHHHHHHHHHHC----C---C-eEEEEeCccccCCCCCCCCCC
Q 013226 178 LEVDQIYHLACPAS--PVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----G---A-RFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~--~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~----g---~-r~v~~SS~~v~g~~~~~~~~e 243 (447)
.++|+||||||... ..... ++....+++|+.|+.++++++... + . +||++||...+.
T Consensus 106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------- 176 (280)
T 4da9_A 106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM--------- 176 (280)
T ss_dssp SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------------
T ss_pred CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc---------
Confidence 36999999999732 22221 234568899999999988886442 2 3 899999987542
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
+......|+.||++.+.+++.++.+ .|+++.+|+||.+.++.... +.......... . .
T Consensus 177 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~-~-------~ 237 (280)
T 4da9_A 177 -------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAA----VSGKYDGLIES-G-------L 237 (280)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------------
T ss_pred -------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhh----cchhHHHHHhh-c-------C
Confidence 1122378999999999999999876 58999999999999875311 10111100000 0 1
Q ss_pred CeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCc
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGE 355 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~ 355 (447)
.....+.+++|+|+++++++.... .| .+++.+|..
T Consensus 238 ~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (280)
T 4da9_A 238 VPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGGLS 276 (280)
T ss_dssp ----CCBCHHHHHHHHHHHHTSTTGGGTTCEEEESTTCC
T ss_pred CCcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 122347889999999999998653 34 777776543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=181.23 Aligned_cols=214 Identities=17% Similarity=0.171 Sum_probs=151.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----c-------cC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----L-------LE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~-------~~ 179 (447)
++++|+|+||||+|+||++++++|+++|++|++++|+..... ...... ..++.++.+|+.+.. + .+
T Consensus 9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (265)
T 2o23_A 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGE-AQAKKL-GNNCVFAPADVTSEKDVQTALALAKGKFGR 86 (265)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHH-HHHHHH-CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHH-HHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 467899999999999999999999999999999999754322 221112 236888999997763 1 27
Q ss_pred CCEEEEeccCCCCCCc----------ccChHHHHHHHHHHHHHHHHHHHHC----------CC-eEEEEeCccccCCCCC
Q 013226 180 VDQIYHLACPASPVHY----------KFNPVKTIKTNVVGTLNMLGLAKRV----------GA-RFLLTSTSEVYGDPLQ 238 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~----------~~~~~~~~~~Nv~gt~~ll~aa~~~----------g~-r~v~~SS~~v~g~~~~ 238 (447)
+|+||||||....... ..+....+++|+.++.++++++.+. +. +||++||...+..
T Consensus 87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--- 163 (265)
T 2o23_A 87 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG--- 163 (265)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC---
T ss_pred CCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCC---
Confidence 9999999997643221 1235568999999999999988654 44 8999999886532
Q ss_pred CCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeE
Q 013226 239 HPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 315 (447)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~ 315 (447)
..+...|+.+|++.+.+++.++.+ .++++++|+||.+.++...... ..+........+.
T Consensus 164 -------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~----~~~~~~~~~~~~~- 225 (265)
T 2o23_A 164 -------------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLP----EKVCNFLASQVPF- 225 (265)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--------------CHHHHTCSS-
T ss_pred -------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccC----HHHHHHHHHcCCC-
Confidence 112378999999999999998876 4899999999999887531100 1111111111111
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCCC-CC-cEEecCCCc
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGDH-VG-PFNLGNPGE 355 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~~-~g-~~~i~~~~~ 355 (447)
...+++++|+|+++++++++.. .| .+++.++..
T Consensus 226 -------~~~~~~~~dva~~~~~l~~~~~~~G~~i~vdgG~~ 260 (265)
T 2o23_A 226 -------PSRLGDPAEYAHLVQAIIENPFLNGEVIRLDGAIR 260 (265)
T ss_dssp -------SCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTCC
T ss_pred -------cCCCCCHHHHHHHHHHHhhcCccCceEEEECCCEe
Confidence 0237899999999999998653 34 777776544
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=185.67 Aligned_cols=217 Identities=13% Similarity=0.023 Sum_probs=153.2
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~ 177 (447)
+++|+++||||+ |+||++++++|+++|++|++++|+. ...+...... ......++.+|+.++. +
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 568899999999 9999999999999999999999965 2111111110 0112467888987753 1
Q ss_pred cCCCEEEEeccCCCC----CC-----cccChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCc
Q 013226 178 LEVDQIYHLACPASP----VH-----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~----~~-----~~~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
.++|+||||||.... .. ...+....+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------- 154 (265)
T 1qsg_A 86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------- 154 (265)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc-----------
Confidence 268999999997542 11 11235568999999999999999775 23899999987542
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.+++|..... .....+........++
T Consensus 155 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~~p~-------- 219 (265)
T 1qsg_A 155 -----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI--KDFRKMLAHCEAVTPI-------- 219 (265)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS--TTHHHHHHHHHHHSTT--------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcc--cccHHHHHHHHhcCCC--------
Confidence 11223689999999999999998775 89999999999999864211 1122333333332221
Q ss_pred eEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCccC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFT 357 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s 357 (447)
..+.+++|+|+++++++.+.. .| .+++.++..++
T Consensus 220 -~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 220 -RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIA 257 (265)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGGB
T ss_pred -CCCCCHHHHHHHHHHHhCchhcCccCCEEEECCCcCCC
Confidence 136789999999999987532 34 77887765443
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-21 Score=178.67 Aligned_cols=215 Identities=11% Similarity=0.008 Sum_probs=154.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+ +.... ...++.++.+|+.+.. .
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEK-FENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999999986432211 11111 1346888999997763 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|+||||||......... +....+++|+.++.++++++.+ .+. +||++||...+..
T Consensus 81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 147 (247)
T 3lyl_A 81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAG------------- 147 (247)
T ss_dssp CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC-------------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccC-------------
Confidence 35899999999865433222 3456899999999999888643 344 9999999875421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.||++.+.+++.++.+ .|+++.+++||.+.++..... ............ ....
T Consensus 148 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~---------~~~~ 211 (247)
T 3lyl_A 148 ---NPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKL----TDEQKSFIATKI---------PSGQ 211 (247)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTS----CHHHHHHHHTTS---------TTCC
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhc----cHHHHHHHhhcC---------CCCC
Confidence 112378999999999999999875 489999999999998754211 122222222221 1235
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCCCcc
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEF 356 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~ 356 (447)
+.+++|+|+++++++.++. .| .+++.+|..+
T Consensus 212 ~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 212 IGEPKDIAAAVAFLASEEAKYITGQTLHVNGGMYM 246 (247)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSSC
T ss_pred CcCHHHHHHHHHHHhCCCcCCccCCEEEECCCEec
Confidence 7899999999999997542 34 7888766543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=183.76 Aligned_cols=219 Identities=11% Similarity=0.118 Sum_probs=153.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+ ....+ ...++.++.+|+.+..
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (264)
T 3ucx_A 7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLED-VAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKA 85 (264)
T ss_dssp CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHH-HHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999986432211 11111 2346889999998763
Q ss_pred ccCCCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||.... .... ++....+++|+.++.++++++.. .+.+||++||...+.
T Consensus 86 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 152 (264)
T 3ucx_A 86 YGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRH------------- 152 (264)
T ss_dssp TSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGC-------------
T ss_pred cCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhcc-------------
Confidence 2369999999987422 2222 23456899999999999988643 345999999987542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCC-------CchHHHHHHHHHhCCCeEEe
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDD-------GRVVSNFVAQALRKEPLTVY 317 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 317 (447)
+......|+.||++.+.+++.++.+ .|+++.+|+||.|++|...... ......+.......
T Consensus 153 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 223 (264)
T 3ucx_A 153 ---SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAG------ 223 (264)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTT------
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhcc------
Confidence 2223378999999999999999876 5899999999999986421000 00001112222222
Q ss_pred cCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 318 GDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 318 ~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
.....+.+++|+|+++++++... ..| .+++.+|..
T Consensus 224 ---~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 224 ---SDLKRLPTEDEVASAILFMASDLASGITGQALDVNCGEY 262 (264)
T ss_dssp ---SSSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred ---CCcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 12234789999999999999754 234 777776643
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=177.92 Aligned_cols=214 Identities=14% Similarity=0.072 Sum_probs=150.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQI 183 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~V 183 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.... +.+. . ..++.++.+|+.++. +.++|+|
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~l 78 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKL-QELE-K--YPGIQTRVLDVTKKKQIDQFANEVERLDVL 78 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-GGGG-G--STTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHH-h--ccCceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence 35789999999999999999999999999999999864322 1221 1 126788899997763 3479999
Q ss_pred EEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 184 YHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 184 ih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
|||||......... +....+++|+.|+.++++++.+ .+. +||++||...+... + .+
T Consensus 79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------~-~~ 143 (246)
T 2ag5_A 79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG--------------V-VN 143 (246)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC--------------C-TT
T ss_pred EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC--------------C-CC
Confidence 99999765433222 2456889999999999988653 354 99999998754211 0 02
Q ss_pred CChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCC--CchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 255 RSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
...|+.+|++.+.+++.++.+. |++++++|||.+++|...... ...............+. ..+.++
T Consensus 144 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 214 (246)
T 2ag5_A 144 RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKT---------GRFATA 214 (246)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTT---------SSCEEH
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCCC---------CCCCCH
Confidence 3689999999999999998764 899999999999987421000 00001112222222111 236899
Q ss_pred HHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 330 SDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 330 ~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+|+|+++++++..+ ..| .+++.++
T Consensus 215 ~dvA~~v~~l~s~~~~~~tG~~i~vdgG 242 (246)
T 2ag5_A 215 EEIAMLCVYLASDESAYVTGNPVIIDGG 242 (246)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred HHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 99999999999754 235 6666654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=179.49 Aligned_cols=213 Identities=14% Similarity=0.080 Sum_probs=153.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+..... ...... ...+..+.+|++++. +.
T Consensus 5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (248)
T 3op4_A 5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQ-AISDYL-GDNGKGMALNVTNPESIEAVLKAITDEFG 82 (248)
T ss_dssp TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHh-cccceEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 3568899999999999999999999999999999998643221 111111 124678889998763 23
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||+........ +....+++|+.|+.++++++.. .+. +||++||...+.
T Consensus 83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~--------------- 147 (248)
T 3op4_A 83 GVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM--------------- 147 (248)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC---------------
Confidence 6999999999865443322 3456899999999999988743 444 999999987442
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.+..+..... ............+. ..+
T Consensus 148 -~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~----~~~~~~~~~~~~p~---------~r~ 213 (248)
T 3op4_A 148 -GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKAL----NDEQRTATLAQVPA---------GRL 213 (248)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTS----CHHHHHHHHHTCTT---------CSC
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhc----CHHHHHHHHhcCCC---------CCC
Confidence 11223789999999999999998764 89999999999988753211 12222223332221 247
Q ss_pred ccHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 327 QFVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
.+++|+|+++++++.... .| .+++.+|.
T Consensus 214 ~~p~dva~~v~~L~s~~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 214 GDPREIASAVAFLASPEAAYITGETLHVNGGM 245 (248)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHcCCccCCccCcEEEECCCe
Confidence 899999999999997542 35 67776553
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-21 Score=174.90 Aligned_cols=201 Identities=13% Similarity=0.048 Sum_probs=145.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQI 183 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~V 183 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.. +|+.++. +.++|+|
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-------------------~D~~~~~~v~~~~~~~g~id~l 63 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-------------------LDISDEKSVYHYFETIGAFDHL 63 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-------------------CCTTCHHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-------------------cCCCCHHHHHHHHHHhCCCCEE
Confidence 357889999999999999999999999999999988532 3444432 2469999
Q ss_pred EEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC
Q 013226 184 YHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR 255 (447)
Q Consensus 184 ih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~ 255 (447)
|||||.... .... ++....+++|+.++.++++++.+.- .+||++||...+.. ....
T Consensus 64 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~----------------~~~~ 127 (223)
T 3uce_A 64 IVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKV----------------VANT 127 (223)
T ss_dssp EECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSC----------------CTTC
T ss_pred EECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccC----------------CCCc
Confidence 999997622 2221 2245689999999999999987652 38999999876532 2234
Q ss_pred ChHHHHHHHHHHHHHHHHhhhC-CcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHH
Q 013226 256 SCYDEGKRTAETLTMDYHRGLG-IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~~~~-i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 334 (447)
..|+.+|++.+.+++.++.+++ +++.+++||.+.+|............+........+. ..+.+++|+|+
T Consensus 128 ~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~dvA~ 198 (223)
T 3uce_A 128 YVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPV---------GKVGEASDIAM 198 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTT---------CSCBCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCC---------CCccCHHHHHH
Confidence 7899999999999999998875 9999999999998753221111222233333332222 24678999999
Q ss_pred HHHHHHcCCC-CC-cEEecCCCcc
Q 013226 335 GLIRLMEGDH-VG-PFNLGNPGEF 356 (447)
Q Consensus 335 ai~~~l~~~~-~g-~~~i~~~~~~ 356 (447)
+++++++... .| .+++.+|..+
T Consensus 199 ~~~~l~~~~~~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 199 AYLFAIQNSYMTGTVIDVDGGALL 222 (223)
T ss_dssp HHHHHHHCTTCCSCEEEESTTGGG
T ss_pred HHHHHccCCCCCCcEEEecCCeec
Confidence 9999998653 35 7777766543
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=182.19 Aligned_cols=221 Identities=12% Similarity=0.060 Sum_probs=146.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC---CCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG---NPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~D~~~~~------------~ 177 (447)
+++|+++||||+|+||++++++|+++|++|++++|+.....+.....+. ..++.++.+|+.++. +
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 81 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999864320111111110 236788899998763 1
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|+||||||......... +....+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 82 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 148 (260)
T 1x1t_A 82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVA------------- 148 (260)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcC-------------
Confidence 36999999999765433222 245689999999999888874 3454 9999999876532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHH-Hh-CCCeEEe-cCCCe
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQA-LR-KEPLTVY-GDGKQ 322 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~ 322 (447)
......|+.||++.+.+++.++.++ |+++++|+||.+.+|..... ........ .. ......+ .....
T Consensus 149 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p 221 (260)
T 1x1t_A 149 ---SANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQ----ISALAEKNGVDQETAARELLSEKQP 221 (260)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------CHHHHCT
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHh----hhhhccccCCchHHHHHHHhhccCC
Confidence 1123789999999999999998764 89999999999998753210 00000000 00 0000000 00001
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
...+.+++|+|+++++++... ..| .+++.++
T Consensus 222 ~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG 256 (260)
T 1x1t_A 222 SLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp TCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCC
Confidence 134789999999999999753 234 6777655
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=175.07 Aligned_cols=196 Identities=12% Similarity=0.115 Sum_probs=130.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYH 185 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih 185 (447)
++.+|+||||||+|+||++++++|+++| ++|++++|+.....+ ....++.++.+|+.+. .+.++|+|||
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~ 94 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK-----PYPTNSQIIMGDVLNHAALKQAMQGQDIVYA 94 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS-----SCCTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc-----cccCCcEEEEecCCCHHHHHHHhcCCCEEEE
Confidence 3456889999999999999999999999 899999996543222 1234788999999875 3568999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRT 264 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~ 264 (447)
|||... ....+.++++++++.++ +||++||..+|+.......... ..... .+...+..
T Consensus 95 ~a~~~~--------------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~ 153 (236)
T 3qvo_A 95 NLTGED--------------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWN---NAVIG----EPLKPFRR 153 (236)
T ss_dssp ECCSTT--------------HHHHHHHHHHHHHHTTCCEEEEECCCCC-------------------C----GGGHHHHH
T ss_pred cCCCCc--------------hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccch---hhccc----chHHHHHH
Confidence 998421 11356789999999997 9999999999875433221111 00122 22333344
Q ss_pred HHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe-eEccccHHHHHHHHHHHHcCC
Q 013226 265 AETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ-TRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 265 ~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~ai~~~l~~~ 343 (447)
+|..+ ++.++++++||||.++++.... ......+.. ...+++++|+|++++.+++++
T Consensus 154 ~~~~l----~~~gi~~~~vrPg~i~~~~~~~------------------~~~~~~~~~~~~~~i~~~DvA~~i~~ll~~~ 211 (236)
T 3qvo_A 154 AADAI----EASGLEYTILRPAWLTDEDIID------------------YELTSRNEPFKGTIVSRKSVAALITDIIDKP 211 (236)
T ss_dssp HHHHH----HTSCSEEEEEEECEEECCSCCC------------------CEEECTTSCCSCSEEEHHHHHHHHHHHHHST
T ss_pred HHHHH----HHCCCCEEEEeCCcccCCCCcc------------------eEEeccCCCCCCcEECHHHHHHHHHHHHcCc
Confidence 44443 3579999999999999874210 111111111 135799999999999999986
Q ss_pred C--C-CcEEecCCCc
Q 013226 344 H--V-GPFNLGNPGE 355 (447)
Q Consensus 344 ~--~-g~~~i~~~~~ 355 (447)
. . +.|++++++.
T Consensus 212 ~~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 212 EKHIGENIGINQPGT 226 (236)
T ss_dssp TTTTTEEEEEECSSC
T ss_pred ccccCeeEEecCCCC
Confidence 5 2 4899988754
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=184.88 Aligned_cols=218 Identities=15% Similarity=0.094 Sum_probs=154.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL----------- 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~----------- 177 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+...... ...++.++.+|+.+...
T Consensus 16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 95 (266)
T 4egf_A 16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEA 95 (266)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999996433221111100 13468899999987642
Q ss_pred -cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcC
Q 013226 178 -LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 178 -~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
.++|+||||||......... +....+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------ 163 (266)
T 4egf_A 96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA------------ 163 (266)
T ss_dssp HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc------------
Confidence 36999999999865443332 2456889999999999888643 23 3999999988652
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
+......|+.||++.+.+++.++.+ .|+++.+|+||.|.++....... ............++
T Consensus 164 ----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~--------- 228 (266)
T 4egf_A 164 ----PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG--DEAKSAPMIARIPL--------- 228 (266)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC--SHHHHHHHHTTCTT---------
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc--ChHHHHHHHhcCCC---------
Confidence 2223478999999999999999876 48999999999998763210000 01122222322221
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
..+..++|+|+++++++... ..| .+++.+|..
T Consensus 229 ~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 264 (266)
T 4egf_A 229 GRFAVPHEVSDAVVWLASDAASMINGVDIPVDGGYT 264 (266)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhCchhcCccCcEEEECCCcc
Confidence 23678999999999999754 234 777776643
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-21 Score=186.08 Aligned_cols=220 Identities=14% Similarity=0.123 Sum_probs=151.8
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccccc---cCCCceEEEecccccccc-------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHH---FGNPRFELIRHDVVEPIL------- 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~---~~~~~v~~~~~D~~~~~~------- 177 (447)
..+++|+|+||||+|+||++++++|+++|++|++++|+...... ++... ....++.++.+|+.+...
T Consensus 14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 93 (303)
T 1yxm_A 14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 93 (303)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence 35678999999999999999999999999999999986432111 11100 013468899999977631
Q ss_pred -----cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC-----CCeEEEEeCccccCCCCCCCCCC
Q 013226 178 -----LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV-----GARFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 178 -----~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~-----g~r~v~~SS~~v~g~~~~~~~~e 243 (447)
.++|+||||||......... +....+++|+.|+.++++++.+. +.+||++||...++.
T Consensus 94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-------- 165 (303)
T 1yxm_A 94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGF-------- 165 (303)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTCC--------
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeecccCC--------
Confidence 35999999999654332222 24568999999999999987652 338999999873221
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
.....|+.+|+..+.+++.++.+. |++++++|||.++||............+........
T Consensus 166 ---------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-------- 228 (303)
T 1yxm_A 166 ---------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI-------- 228 (303)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS--------
T ss_pred ---------CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcC--------
Confidence 123679999999999999998764 899999999999998421111100011111111111
Q ss_pred CeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
....+.+++|+|+++++++.+. ..| .+++.++..+
T Consensus 229 -p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~~~ 267 (303)
T 1yxm_A 229 -PAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSL 267 (303)
T ss_dssp -TTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred -cccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCCeec
Confidence 1123789999999999999753 234 7777776544
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-21 Score=180.11 Aligned_cols=217 Identities=13% Similarity=0.048 Sum_probs=149.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.++. +
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELD-ECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999998643221 111111 1246788999997752 2
Q ss_pred -cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 -LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 -~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||......... +....+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~------------ 164 (273)
T 1ae1_A 97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA------------ 164 (273)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSC------------
T ss_pred CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCC------------
Confidence 57999999999764433222 345678999999999998873 3454 9999999887642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCch--HHHHHHHHHhCCCeEEecCCCe
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRV--VSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
......|+.||++.+.+++.++.+. |+++++|+||.+++|......... ...+........++
T Consensus 165 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~-------- 232 (273)
T 1ae1_A 165 ----LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPM-------- 232 (273)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTT--------
T ss_pred ----CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCCC--------
Confidence 1123789999999999999998764 899999999999988532110000 01112222221111
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
..+.+++|+|+++++++... ..| .+++.+|.
T Consensus 233 -~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 267 (273)
T 1ae1_A 233 -GRAGKPQEVSALIAFLCFPAASYITGQIIWADGGF 267 (273)
T ss_dssp -CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -CCCcCHHHHHHHHHHHhCccccCcCCCEEEECCCc
Confidence 23689999999999998753 235 67776653
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=172.30 Aligned_cols=193 Identities=15% Similarity=0.231 Sum_probs=137.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHH-hCCCeEEEEecCCC-CCccccccccCCCceEEEecccccc-----cccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNYFT-GKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~-~~G~~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A 187 (447)
+|+|+||||+|+||++++++|+ ++|++|++++|+.. ... .+. ....++.++.+|+.+. .+.++|+|||||
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~-~~~--~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~a 81 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIP-PEI--IDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGA 81 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSC-HHH--HTSTTEEEEECCTTCHHHHHHHHTTCSEEEESC
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccch-hhc--cCCCceEEEECCCCCHHHHHHHHcCCCEEEEcC
Confidence 4569999999999999999999 89999999999643 221 110 0235788999999875 356899999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCC-hHHHHHHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRS-CYDEGKRTA 265 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~-~Y~~sK~~~ 265 (447)
|.. |+. ++++++++++.++ +||++||..+|+..... ..+ |. . .... .|+.+|..+
T Consensus 82 g~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~-~~~--~~---~-~~~~~~y~~~K~~~ 138 (221)
T 3r6d_A 82 MES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVA-LEK--WT---F-DNLPISYVQGERQA 138 (221)
T ss_dssp CCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHH-HHH--HH---H-HTSCHHHHHHHHHH
T ss_pred CCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcc-ccc--cc---c-cccccHHHHHHHHH
Confidence 842 444 9999999999987 99999999988642210 000 00 0 0113 799999999
Q ss_pred HHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe-eEccccHHHHHHHHHHHH--cC
Q 013226 266 ETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ-TRSFQFVSDLVEGLIRLM--EG 342 (447)
Q Consensus 266 E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~ai~~~l--~~ 342 (447)
|.+++. .++++++||||.++++... ........... ...+++.+|+|+++++++ ++
T Consensus 139 e~~~~~----~~i~~~~vrpg~v~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~ 197 (221)
T 3r6d_A 139 RNVLRE----SNLNYTILRLTWLYNDPEX-----------------TDYELIPEGAQFNDAQVSREAVVKAIFDILHAAD 197 (221)
T ss_dssp HHHHHH----SCSEEEEEEECEEECCTTC-----------------CCCEEECTTSCCCCCEEEHHHHHHHHHHHHTCSC
T ss_pred HHHHHh----CCCCEEEEechhhcCCCCC-----------------cceeeccCCccCCCceeeHHHHHHHHHHHHHhcC
Confidence 988754 6999999999999987321 11111111111 123899999999999999 76
Q ss_pred CC---CCcEEecCCC
Q 013226 343 DH---VGPFNLGNPG 354 (447)
Q Consensus 343 ~~---~g~~~i~~~~ 354 (447)
+. .+.+.+.++.
T Consensus 198 ~~~~~~~~~~i~~~~ 212 (221)
T 3r6d_A 198 ETPFHRTSIGVGEPG 212 (221)
T ss_dssp CGGGTTEEEEEECTT
T ss_pred hhhhhcceeeecCCC
Confidence 54 2467776554
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=185.03 Aligned_cols=226 Identities=12% Similarity=-0.044 Sum_probs=157.5
Q ss_pred cccCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc----------
Q 013226 110 GLQRKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI---------- 176 (447)
Q Consensus 110 ~~~~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~---------- 176 (447)
....++|+|+||||+ |+||++++++|+++|++|++++|+.. ..+.+... .....+.++.+|+++..
T Consensus 9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 87 (271)
T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFGSELVFPCDVADDAQIDALFASLK 87 (271)
T ss_dssp CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchh-hHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHH
Confidence 356789999999999 99999999999999999999998632 11111111 01234788999998763
Q ss_pred --ccCCCEEEEeccCCCC----CC-----cccChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCC
Q 013226 177 --LLEVDQIYHLACPASP----VH-----YKFNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQA 242 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~----~~-----~~~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~ 242 (447)
+.++|+||||||.... .. ...+....+++|+.++.++++++... +.+||++||...+.
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-------- 159 (271)
T 3ek2_A 88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER-------- 159 (271)
T ss_dssp HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS--------
T ss_pred HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc--------
Confidence 2368999999997643 11 11234568999999999999998765 23899999987542
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecC
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.|.++.... ......+........++
T Consensus 160 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~~~----- 224 (271)
T 3ek2_A 160 --------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASG--IKSFGKILDFVESNSPL----- 224 (271)
T ss_dssp --------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CC--CHHHHHHHHHHHHHSTT-----
T ss_pred --------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhc--ccchHHHHHHHHhcCCc-----
Confidence 22234789999999999999998764 8999999999998875321 11122333333332222
Q ss_pred CCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCccCHHHHHH
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFTMLELAE 363 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s~~el~~ 363 (447)
..+..++|+|+++++++.+. ..| .+++.+|..+++.++.+
T Consensus 225 ----~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~~~~ 268 (271)
T 3ek2_A 225 ----KRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGMAG 268 (271)
T ss_dssp ----SSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCCC--
T ss_pred ----CCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhhhhh
Confidence 23678999999999999753 235 88888887777665543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-20 Score=176.60 Aligned_cols=220 Identities=16% Similarity=0.085 Sum_probs=153.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc------------cccc---cc--cCCCceEEEecccc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK------------DNLI---HH--FGNPRFELIRHDVV 173 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~------------~~~~---~~--~~~~~v~~~~~D~~ 173 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.+... +.+. .. ....++.++.+|+.
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 4578999999999999999999999999999999998633211 1111 01 12346888999998
Q ss_pred ccc------------ccCCCEEEEeccCCCCCC-cc----cChHHHHHHHHHHHHHHHHHHHHC----C--CeEEEEeCc
Q 013226 174 EPI------------LLEVDQIYHLACPASPVH-YK----FNPVKTIKTNVVGTLNMLGLAKRV----G--ARFLLTSTS 230 (447)
Q Consensus 174 ~~~------------~~~~d~Vih~Ag~~~~~~-~~----~~~~~~~~~Nv~gt~~ll~aa~~~----g--~r~v~~SS~ 230 (447)
+.. +.++|+||||||...... .. ++....+++|+.|+.++++++... + .+||++||.
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 166 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV 166 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence 763 236999999999765432 22 234568999999999999886442 3 399999998
Q ss_pred cccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHH---
Q 013226 231 EVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNF--- 304 (447)
Q Consensus 231 ~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~--- 304 (447)
..+. +......|+.||++.+.+++.++.+ .|+++.+|+||.|.+|.... ......+
T Consensus 167 ~~~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~ 228 (286)
T 3uve_A 167 GGLK----------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHN--EGTFKMFRPD 228 (286)
T ss_dssp GGTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSS--HHHHHHHCTT
T ss_pred hhcc----------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccc--cchhhhcccc
Confidence 7652 1222378999999999999999876 58999999999999875321 0000000
Q ss_pred --------HHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 305 --------VAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 305 --------~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
....... ..... ..+.+++|+|+++++++... ..| ++++.+|..
T Consensus 229 ~~~~~~~~~~~~~~~------~~~~p-~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~ 284 (286)
T 3uve_A 229 LENPGPDDMAPICQM------FHTLP-IPWVEPIDISNAVLFFASDEARYITGVTLPIDAGSC 284 (286)
T ss_dssp SSSCCHHHHHHHHHT------TCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccccchhhHHHHHHh------hhccC-CCcCCHHHHHHHHHHHcCccccCCcCCEEeECCccc
Confidence 0010000 01011 34789999999999999754 235 777776643
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=186.35 Aligned_cols=219 Identities=14% Similarity=0.087 Sum_probs=154.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCC-Ccccccccc--CCCceEEEeccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG-KKDNLIHHF--GNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~-~~~~~~~~~--~~~~v~~~~~D~~~~~----------- 176 (447)
..+++|++|||||+|+||++++++|+++|++|++++|+... ..+.+.... ...++.++.+|+.+..
T Consensus 45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999885321 111111111 2346888999998763
Q ss_pred -ccCCCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 -LLEVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||.... .... ++....+++|+.|+.++++++.... .+||++||...+..
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~------------ 192 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQP------------ 192 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSC------------
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccC------------
Confidence 2469999999997542 2221 2345689999999999999987653 38999999987642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
......|+.||++.+.+++.++.++ |+++++|+||.|+++........ .... ..+.......
T Consensus 193 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~--~~~~---------~~~~~~~p~~ 257 (294)
T 3r3s_A 193 ----SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQT--QDKI---------PQFGQQTPMK 257 (294)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSC--GGGS---------TTTTTTSTTS
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCC--HHHH---------HHHHhcCCCC
Confidence 2223789999999999999998765 89999999999998631100000 0000 0011111223
Q ss_pred ccccHHHHHHHHHHHHcCCC---CC-cEEecCCCcc
Q 013226 325 SFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEF 356 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~ 356 (447)
.+..++|+|+++++++.... .| ++++.+|..+
T Consensus 258 r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 258 RAGQPAELAPVYVYLASQESSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 46788999999999997542 34 7888776544
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=178.13 Aligned_cols=213 Identities=14% Similarity=0.110 Sum_probs=148.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEeccccccc------------c
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------~ 177 (447)
.++++|+++||||+|+||++++++|+++|++|++++|+.+... .....+. ..++.++.+|+.+.. +
T Consensus 25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (276)
T 2b4q_A 25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACA-DTATRLSAYGDCQAIPADLSSEAGARRLAQALGELS 103 (276)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHH-HHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999998643221 1111111 126788889997753 2
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHH----HCC-----CeEEEEeCccccCCCCCCCCCCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVG-----ARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g-----~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
.++|+||||||........ ++....+++|+.|+.++++++. +.+ .+||++||...+...
T Consensus 104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~-------- 175 (276)
T 2b4q_A 104 ARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAM-------- 175 (276)
T ss_dssp SCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCC--------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCC--------
Confidence 3699999999976543222 2245689999999988887764 222 489999998865321
Q ss_pred cCCCCCCCCCCC-hHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHh--CCCeEEec
Q 013226 245 YWGNVNPIGVRS-CYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALR--KEPLTVYG 318 (447)
Q Consensus 245 ~~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 318 (447)
.... .|+.||++.+.+++.++.+ .|+++++|+||.+.++... ............ ..+
T Consensus 176 --------~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p----- 238 (276)
T 2b4q_A 176 --------GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTR----HIANDPQALEADSASIP----- 238 (276)
T ss_dssp --------CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTH----HHHHCHHHHHHHHHTST-----
T ss_pred --------CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchh----hcchhHHHHHHhhcCCC-----
Confidence 1124 7999999999999999876 4899999999999887421 111111111111 111
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
...+.+++|+|+++++++.++ ..| .+++.++
T Consensus 239 ----~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG 273 (276)
T 2b4q_A 239 ----MGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGG 273 (276)
T ss_dssp ----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 123789999999999999764 235 6666655
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=184.29 Aligned_cols=221 Identities=11% Similarity=0.062 Sum_probs=154.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc--cCCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH--FGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+++..
T Consensus 23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 102 (277)
T 4fc7_A 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKE 102 (277)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999998643322111111 01346889999998763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||......... +....+++|+.|+.++++++.. .+. +||++||...+..
T Consensus 103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 170 (277)
T 4fc7_A 103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRG------------ 170 (277)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHT------------
T ss_pred cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCC------------
Confidence 236999999999754433222 3456899999999999998743 233 9999999875421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
......|+.||++.+.+++.++.++ |+++.+|+||.|.++........ ............++ .
T Consensus 171 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~-~~~~~~~~~~~~p~---------~ 236 (277)
T 4fc7_A 171 ----QALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGG-PQASLSTKVTASPL---------Q 236 (277)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSC-CHHHHHHHHHTSTT---------S
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccC-CHHHHHHHhccCCC---------C
Confidence 1123789999999999999998764 89999999999998631100000 01222233333222 2
Q ss_pred ccccHHHHHHHHHHHHcCC---CCC-cEEecCCCccC
Q 013226 325 SFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFT 357 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s 357 (447)
.+.+++|+|+++++++... ..| .+++.+|..++
T Consensus 237 r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG~~~~ 273 (277)
T 4fc7_A 237 RLGNKTEIAHSVLYLASPLASYVTGAVLVADGGAWLT 273 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHH
T ss_pred CCcCHHHHHHHHHHHcCCccCCcCCCEEEECCCcccC
Confidence 3678999999999999753 335 77777664443
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=180.05 Aligned_cols=223 Identities=18% Similarity=0.109 Sum_probs=152.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCC---------Cccccc---cc--cCCCceEEEeccccccc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG---------KKDNLI---HH--FGNPRFELIRHDVVEPI 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~---------~~~~~~---~~--~~~~~v~~~~~D~~~~~ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|.... ..+.+. .. ....++.++.+|+.+..
T Consensus 7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 7 GKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 35788999999999999999999999999999999984221 111111 11 12346888999998763
Q ss_pred ------------ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCC--CeEEEEeCccccC
Q 013226 177 ------------LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYG 234 (447)
Q Consensus 177 ------------~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g--~r~v~~SS~~v~g 234 (447)
+.++|+||||||......+.+ +....+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 166 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK 166 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence 246999999999876543322 345689999999999988853 333 3999999987642
Q ss_pred CCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhC
Q 013226 235 DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRK 311 (447)
Q Consensus 235 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~ 311 (447)
. ......|+.||++.+.+++.++.++ |+++.+|+||.+.+|... ..............
T Consensus 167 ~----------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~---~~~~~~~~~~~~~~ 227 (277)
T 3tsc_A 167 M----------------QPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGS---GDMVTAVGQAMETN 227 (277)
T ss_dssp C----------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGS---HHHHHHHHHHHHTC
T ss_pred C----------------CCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCccc---chhhhhhhhccccc
Confidence 2 1223789999999999999998764 899999999999887531 11111111111111
Q ss_pred CCe-EEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 312 EPL-TVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 312 ~~~-~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
... ........ .-+.+++|+|+++++++.++ ..| .+++.+|
T Consensus 228 ~~~~~~~~~~~p-~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 273 (277)
T 3tsc_A 228 PQLSHVLTPFLP-DWVAEPEDIADTVCWLASDESRKVTAAQIPVDQG 273 (277)
T ss_dssp GGGTTTTCCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhhhccC-CCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCC
Confidence 110 00111111 23789999999999999754 235 6677654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=185.81 Aligned_cols=208 Identities=14% Similarity=0.074 Sum_probs=144.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------ 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------ 177 (447)
.+++|+|+||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+++...
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQ-AVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLL 106 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhC
Confidence 3688999999999999999999999999999999996443221 11111 13468899999987631
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||......... +....+++|+.|+.++++++.. .+ .+||++||...+.
T Consensus 107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 173 (301)
T 3tjr_A 107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV------------- 173 (301)
T ss_dssp SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-------------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC-------------
Confidence 36999999999865433322 2456899999999999998643 34 3999999988552
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHH-----HHhCCCeEEecC
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQ-----ALRKEPLTVYGD 319 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 319 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.+.++.. ...... .....+...++.
T Consensus 174 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 242 (301)
T 3tjr_A 174 ---PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLV--------SNSERIRGADYGMSATPEGAFGP 242 (301)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHH--------HHHHHHC----------------
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccc--------cccccccchhhccccChhhhccc
Confidence 22234789999999999999998764 89999999999987531 111100 001111122222
Q ss_pred CCeeEccccHHHHHHHHHHHHcCCC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~~ 344 (447)
......+++++|+|++++.+++++.
T Consensus 243 ~~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 243 LPTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp ------CCCHHHHHHHHHHHHHHTC
T ss_pred cccccCCCCHHHHHHHHHHHHhcCC
Confidence 2233568999999999999998765
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=178.37 Aligned_cols=209 Identities=13% Similarity=0.050 Sum_probs=146.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-ecCCCCCcccccccc--CCCceEEEeccccccc------------ccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVV-DNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+|+|+||||+|+||++++++|+++|++|+++ +|+... .+.+...+ ...++.++.+|+.+.. +.+
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKA-AEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999995 564221 11111111 1236788899997753 136
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCcccc-CCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVY-GDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~-g~~~~~~~~e~~~~~~ 249 (447)
+|+||||||........ .+..+.+++|+.|+.++++++.+ .+. +||++||...+ +.+
T Consensus 80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------- 146 (244)
T 1edo_A 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNI------------- 146 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT-------------
T ss_pred CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCC-------------
Confidence 99999999976543222 23456899999999999988765 355 99999998643 321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
+...|+.+|++.+.+++.++.+ .+++++++|||.++++.... +...+........+ ...+
T Consensus 147 ----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~~~ 209 (244)
T 1edo_A 147 ----GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK----LGEDMEKKILGTIP---------LGRT 209 (244)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT----TCHHHHHHHHTSCT---------TCSC
T ss_pred ----CCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhh----cChHHHHHHhhcCC---------CCCC
Confidence 2368999999999999998876 48999999999999864311 11122222222211 1247
Q ss_pred ccHHHHHHHHHHHHcCC----CCC-cEEecCCC
Q 013226 327 QFVSDLVEGLIRLMEGD----HVG-PFNLGNPG 354 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~----~~g-~~~i~~~~ 354 (447)
++++|+|+++++++..+ ..| .|++.++.
T Consensus 210 ~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 210 GQPENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp BCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred CCHHHHHHHHHHHhCCCccCCcCCCEEEeCCCc
Confidence 89999999999998443 234 77777653
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=175.25 Aligned_cols=208 Identities=14% Similarity=0.061 Sum_probs=145.3
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc------cccCCCEE
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP------ILLEVDQI 183 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~V 183 (447)
...+++|+|+||||+|+||++++++|+++|++|++++|+.. ... .. ..+.++ +|+.+. .+.++|+|
T Consensus 14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~~~-~~--~~~~~~-~D~~~~~~~~~~~~~~iD~l 85 (249)
T 1o5i_A 14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE----LLK-RS--GHRYVV-CDLRKDLDLLFEKVKEVDIL 85 (249)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHH-HT--CSEEEE-CCTTTCHHHHHHHSCCCSEE
T ss_pred HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH----HHH-hh--CCeEEE-eeHHHHHHHHHHHhcCCCEE
Confidence 35678999999999999999999999999999999998641 111 11 145566 787221 12379999
Q ss_pred EEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 184 YHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 184 ih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
|||||......+.+ +....+++|+.|+.+++++ +++.+. +||++||...+.. ...
T Consensus 86 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------------~~~ 149 (249)
T 1o5i_A 86 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISP----------------IEN 149 (249)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC----------------CTT
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCC----------------CCC
Confidence 99999765433222 2456889999997766554 455565 9999999987642 122
Q ss_pred CChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHH-HHHhCCCeEEecCCCeeEccccHH
Q 013226 255 RSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVA-QALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
...|+.+|++.+.+++.++.+ .|+++++|+||.++++...... ..... ......+ ...+.+++
T Consensus 150 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~----~~~~~~~~~~~~p---------~~~~~~~~ 216 (249)
T 1o5i_A 150 LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELL----SEEKKKQVESQIP---------MRRMAKPE 216 (249)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHS----CHHHHHHHHTTST---------TSSCBCHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccc----hhhHHHHHHhcCC---------CCCCcCHH
Confidence 378999999999999998875 5899999999999987531100 11111 1222111 12478999
Q ss_pred HHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 331 DLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 331 D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
|+|+++++++.++ ..| .+++.++.
T Consensus 217 dvA~~i~~l~s~~~~~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 217 EIASVVAFLCSEKASYLTGQTIVVDGGL 244 (249)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 9999999998753 235 67776653
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=180.34 Aligned_cols=215 Identities=18% Similarity=0.173 Sum_probs=147.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++++|+++||||+|+||++++++|+++|++|++++|+.... +.+.... ..++.++.+|+.+.. +.+
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAG-QQLAAEL-GERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHH-HHHHHHH-CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHc-CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999999864321 1111112 246788999998763 235
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
+|+||||||......... +....+++|+.|+.++++++. +.+.+||++||...+..
T Consensus 81 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------------- 144 (253)
T 1hxh_A 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLP---------------- 144 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSC----------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcCC----------------
Confidence 899999999764432222 245688999998887776543 33459999999886532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---h--CCcEEEEeeccccCCCCcc-CCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---L--GIEARIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~--~i~~~ivRp~~i~Gp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.||++.+.+++.++.+ . +++++++|||.+++|.... ..... ....+.... .......
T Consensus 145 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~----~~~~~~~~~-----~~~p~~~ 215 (253)
T 1hxh_A 145 IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGV----SKEMVLHDP-----KLNRAGR 215 (253)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTC----CHHHHBCBT-----TTBTTCC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhh----hHHHHhhhh-----ccCccCC
Confidence 122368999999999999998866 3 8999999999999864210 00000 000011100 0001124
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+.+++|+|+++++++.++ ..| .+++.++
T Consensus 216 ~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 247 (253)
T 1hxh_A 216 AYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp EECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred CCCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence 689999999999999764 235 6666554
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-21 Score=177.20 Aligned_cols=202 Identities=15% Similarity=0.135 Sum_probs=129.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----------ccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----------LLEV 180 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----------~~~~ 180 (447)
++++|+++||||+|+||++++++|++ |+.|++++|+..... .+ ....++.++.+|+.+.. +.++
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~-~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i 76 (245)
T 3e9n_A 2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLA-AL---AEIEGVEPIESDIVKEVLEEGGVDKLKNLDHV 76 (245)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHH-HH---HTSTTEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHH-HH---HhhcCCcceecccchHHHHHHHHHHHHhcCCC
Confidence 35789999999999999999999987 999999998543221 11 12346788888886651 2369
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
|+||||||......... .....+++|+.|+.++++++. +.+.+||++||...+.. .
T Consensus 77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~----------------~ 140 (245)
T 3e9n_A 77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNGP----------------H 140 (245)
T ss_dssp SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC------------------------
T ss_pred CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccccC----------------C
Confidence 99999999865443332 245678999999888888763 33459999999886532 2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
.....|+.||++.+.+++.++.+ .|+++.+++||.+.++... .+..... .......++++
T Consensus 141 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~--------~~~~~~~---------~~~~~~~~~~p 203 (245)
T 3e9n_A 141 PGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQ--------GLMDSQG---------TNFRPEIYIEP 203 (245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------CCGGGSCH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhh--------hhhhhhh---------cccccccCCCH
Confidence 22378999999999999999876 5899999999999886421 1111100 00112357899
Q ss_pred HHHHHHHHHHHcCCCCC-cEEec
Q 013226 330 SDLVEGLIRLMEGDHVG-PFNLG 351 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~~g-~~~i~ 351 (447)
+|+|++++++++++..+ ++++.
T Consensus 204 ~dvA~~i~~l~~~~~~~~~~~i~ 226 (245)
T 3e9n_A 204 KEIANAIRFVIDAGETTQITNVD 226 (245)
T ss_dssp HHHHHHHHHHHTSCTTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCccceeeeE
Confidence 99999999999987664 66653
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=180.62 Aligned_cols=214 Identities=17% Similarity=0.185 Sum_probs=148.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----------ccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----------LLE 179 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----------~~~ 179 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.. +..... ..++.++.+|+.+.. +.+
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~g~ 79 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE----DVVADL-GDRARFAAADVTDEAAVASALDLAETMGT 79 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH----HHHHHT-CTTEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH----HHHHhc-CCceEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 4578899999999999999999999999999999998432 221121 346889999997763 137
Q ss_pred CCEEEEeccCCCCC--------CcccChHHHHHHHHHHHHHHHHHHHHC------------CC-eEEEEeCccccCCCCC
Q 013226 180 VDQIYHLACPASPV--------HYKFNPVKTIKTNVVGTLNMLGLAKRV------------GA-RFLLTSTSEVYGDPLQ 238 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~--------~~~~~~~~~~~~Nv~gt~~ll~aa~~~------------g~-r~v~~SS~~v~g~~~~ 238 (447)
+|+||||||..... ...++..+.+++|+.|+.++++++... +. +||++||...+.
T Consensus 80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 155 (257)
T 3tl3_A 80 LRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD---- 155 (257)
T ss_dssp EEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C----
T ss_pred CCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC----
Confidence 99999999975321 112235678999999999999987642 23 899999987542
Q ss_pred CCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeE
Q 013226 239 HPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 315 (447)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~ 315 (447)
+......|+.||++.+.+++.++.+ .|+++++|+||.|.++.... +............+..
T Consensus 156 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~~~~ 219 (257)
T 3tl3_A 156 ------------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLAS----LPEEARASLGKQVPHP 219 (257)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC-------CHHHHHHHHHTSSSS
T ss_pred ------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhh----ccHHHHHHHHhcCCCC
Confidence 1112368999999999999999876 48999999999998875321 1122222233322210
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCCC-CC-cEEecCCCccC
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGDH-VG-PFNLGNPGEFT 357 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~~-~g-~~~i~~~~~~s 357 (447)
..+.+++|+|+++++++++.. .| .+++.+|..+.
T Consensus 220 --------~r~~~p~dva~~v~~l~s~~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 220 --------SRLGNPDEYGALAVHIIENPMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp --------CSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTC---
T ss_pred --------CCccCHHHHHHHHHHHhcCCCCCCCEEEECCCccCC
Confidence 247889999999999998753 35 77777665443
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=181.91 Aligned_cols=212 Identities=9% Similarity=0.043 Sum_probs=147.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+ +.... ..++.++.+|+++.. +.
T Consensus 23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (266)
T 3grp_A 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKE-IAADL-GKDVFVFSANLSDRKSIKQLAEVAEREME 100 (266)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHH-CSSEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-CCceEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 35788999999999999999999999999999999986432221 11111 246889999998763 13
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......+.. +..+.+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 101 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~--------------- 165 (266)
T 3grp_A 101 GIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVV--------------- 165 (266)
T ss_dssp SCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcC---------------
Confidence 6999999999865433322 34568899999977777665 34455 999999987442
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
+......|+.||++.+.+++.++.++ |+++.+|+||.+.++..... ............++ ..+
T Consensus 166 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~----~~~~~~~~~~~~p~---------~r~ 231 (266)
T 3grp_A 166 -GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL----NEKQKEAIMAMIPM---------KRM 231 (266)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC----CHHHHHHHHTTCTT---------CSC
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc----CHHHHHHHHhcCCC---------CCC
Confidence 11123789999999999999998764 89999999999987642111 12222333333222 346
Q ss_pred ccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 327 QFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.+++|+|+++++++.+.. .| ++++.+|
T Consensus 232 ~~~edvA~~v~~L~s~~~~~itG~~i~vdGG 262 (266)
T 3grp_A 232 GIGEEIAFATVYLASDEAAYLTGQTLHINGG 262 (266)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 789999999999997542 34 7777655
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=182.15 Aligned_cols=215 Identities=11% Similarity=0.016 Sum_probs=151.5
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
.++++|+|+||||+|+||++++++|+++|++|++++|+.....+.+.... ...++.++.+|+.+..
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 104 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQS 104 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999985443322222211 2347889999997763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
..++|+||||||......... +....+++|+.|+.++++++.+ .+. +||++||...+.
T Consensus 105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 171 (271)
T 4iin_A 105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER------------- 171 (271)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-------------
T ss_pred cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC-------------
Confidence 136999999999865543322 3456899999999988887643 344 999999987542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+..+...|+.+|++.+.+++.++.+ .++++.+++||.+.++.... ....+. ..+.......
T Consensus 172 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~~---------~~~~~~~~~~ 235 (271)
T 4iin_A 172 ---GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNAN----LKDELK---------ADYVKNIPLN 235 (271)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-------------------------CGGGCTTC
T ss_pred ---CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhh----hcHHHH---------HHHHhcCCcC
Confidence 1223478999999999999999876 58999999999998764211 101111 1111111223
Q ss_pred ccccHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
.+.+++|+|+++++++.++. .| .+++.+|.
T Consensus 236 ~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 236 RLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGL 269 (271)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCCCe
Confidence 57899999999999997542 34 77776553
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-21 Score=179.40 Aligned_cols=221 Identities=10% Similarity=0.021 Sum_probs=147.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC----CCceEEEeccccccc-----cc----
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG----NPRFELIRHDVVEPI-----LL---- 178 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~-----~~---- 178 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... .....+. ..++.++.+|+.++. +.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLE-AAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999998643211 1111111 226788999997763 11
Q ss_pred --CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 179 --EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 179 --~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 83 ~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 150 (260)
T 2z1n_A 83 LGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRP------------ 150 (260)
T ss_dssp TTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------
T ss_pred hcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCC------------
Confidence 4999999999754432222 34568999999997777665 34555 9999999886532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchH--HHHHHHHHhCCCeEEecCCCe
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVV--SNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 322 (447)
......|+.+|+..+.+++.++.++ |+++++|+||.+++|.......... ..+..... ...+.....
T Consensus 151 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p 222 (260)
T 2z1n_A 151 ----WQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEA----LKSMASRIP 222 (260)
T ss_dssp ----CTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC---------------------------CCT
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHH----HHHHHhcCC
Confidence 1223789999999999999998765 8999999999999886320000000 00000000 000000011
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
...+.+++|+|+++++++... ..| .+++.++
T Consensus 223 ~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG 257 (260)
T 2z1n_A 223 MGRVGKPEELASVVAFLASEKASFITGAVIPVDGG 257 (260)
T ss_dssp TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCCccCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence 123679999999999999753 235 6666654
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=177.25 Aligned_cols=203 Identities=8% Similarity=0.000 Sum_probs=136.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc-----------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL-----------L 178 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~-----------~ 178 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+++... .
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAP-LVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHH-HHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 4678999999999999999999999999999999996543222 11111 13478899999987631 3
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 147 (252)
T 3h7a_A 83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLR--------------- 147 (252)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTC---------------
T ss_pred CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcC---------------
Confidence 6899999999865443322 24568999999999988876 34454 999999987542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcE-EEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEA-RIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~-~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.||++.+.+++.++.++ |+++ .+++||.+..+... ....... ..+.......
T Consensus 148 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~--------~~~~~~~-----~~~~~~~~~~- 212 (252)
T 3h7a_A 148 -GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVR--------ERREQMF-----GKDALANPDL- 212 (252)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------------------
T ss_pred -CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhh--------ccchhhh-----hhhhhcCCcc-
Confidence 12223789999999999999998764 8999 89999998876421 1110000 0011111223
Q ss_pred cccHHHHHHHHHHHHcCCCC
Q 013226 326 FQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~~ 345 (447)
+++++|+|+++++++.++..
T Consensus 213 ~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 213 LMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp -CCHHHHHHHHHHHHHCCGG
T ss_pred CCCHHHHHHHHHHHHhCchh
Confidence 88999999999999987643
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=176.97 Aligned_cols=211 Identities=18% Similarity=0.132 Sum_probs=147.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++|+++||||+|+||++++++|+++|++|++++|+.....+.....+ ...++.++.+|+.++. +.
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG 81 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 468899999999999999999999999999999983222211111111 1246788999998763 13
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCcccc-CCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVY-GDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~-g~~~~~~~~e~~~~~ 248 (447)
++|+||||||........+ +....+++|+.|+.++++++. +.+. +||++||...+ +.+
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~------------ 149 (246)
T 2uvd_A 82 QVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNP------------ 149 (246)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCT------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCC------------
Confidence 6999999999765432222 345689999999777776653 4455 99999998743 221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
....|+.+|+..+.+++.++.+ .|+++++|+||.+.++......... ........+. ..
T Consensus 150 -----~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~----~~~~~~~~p~---------~~ 211 (246)
T 2uvd_A 150 -----GQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENI----KAEMLKLIPA---------AQ 211 (246)
T ss_dssp -----TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTTH----HHHHHHTCTT---------CS
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHHH----HHHHHhcCCC---------CC
Confidence 2368999999999999998765 4899999999999887532111111 1122222111 23
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+++++|+|+++++++..+ ..| .+++.++
T Consensus 212 ~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG 243 (246)
T 2uvd_A 212 FGEAQDIANAVTFFASDQSKYITGQTLNVDGG 243 (246)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHcCchhcCCCCCEEEECcC
Confidence 789999999999999754 235 6676655
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-20 Score=169.80 Aligned_cols=209 Identities=15% Similarity=0.124 Sum_probs=150.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQIY 184 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~Vi 184 (447)
++||+++||||+++||+++++.|+++|++|++++|+.+.... ....++..+.+|++++. +.++|++|
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLV 83 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA-----PRHPRIRREELDITDSQRLQRLFEALPRLDVLV 83 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS-----CCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh-----hhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 489999999999999999999999999999999997543322 12347888999998763 45799999
Q ss_pred EeccCCCCCCc--ccChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChH
Q 013226 185 HLACPASPVHY--KFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCY 258 (447)
Q Consensus 185 h~Ag~~~~~~~--~~~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y 258 (447)
||||+..+... .++.+..+++|+.|+..+.+++.. .+.+||++||..... +......|
T Consensus 84 NNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~----------------~~~~~~~Y 147 (242)
T 4b79_A 84 NNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTF----------------GSADRPAY 147 (242)
T ss_dssp ECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTS----------------CCSSCHHH
T ss_pred ECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccC----------------CCCCCHHH
Confidence 99998654221 123556899999999888887643 345999999987431 11223789
Q ss_pred HHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHH
Q 013226 259 DEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a 335 (447)
+.||+....+.+.++.++ ||++..|.||.|..|-....... ......+....|+. -+...+|+|.+
T Consensus 148 ~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~--~~~~~~~~~~~Plg---------R~g~peeiA~~ 216 (242)
T 4b79_A 148 SASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKAD--VEATRRIMQRTPLA---------RWGEAPEVASA 216 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCC--HHHHHHHHHTCTTC---------SCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCC--HHHHHHHHhcCCCC---------CCcCHHHHHHH
Confidence 999999999999998764 89999999999987743211111 22334444443332 24567999999
Q ss_pred HHHHHcCCC---CC-cEEecCC
Q 013226 336 LIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 336 i~~~l~~~~---~g-~~~i~~~ 353 (447)
+++++.... +| ++.+.+|
T Consensus 217 v~fLaSd~a~~iTG~~l~VDGG 238 (242)
T 4b79_A 217 AAFLCGPGASFVTGAVLAVDGG 238 (242)
T ss_dssp HHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHhCchhcCccCceEEECcc
Confidence 999987642 45 5555443
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-21 Score=179.23 Aligned_cols=219 Identities=13% Similarity=0.051 Sum_probs=148.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++++.....+.....+ ...++.++.+|+++.. +
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999998654332222221111 1346788999998763 2
Q ss_pred cCCCEEEEeccCC-CCCCccc----ChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 178 LEVDQIYHLACPA-SPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 178 ~~~d~Vih~Ag~~-~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
.++|+||||||.. ....... .....+++|+.|+.++++++.... .+||++||...+..
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 150 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG-------------- 150 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC--------------
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC--------------
Confidence 3699999999965 2222222 245689999999999999987753 38999999886511
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhhC--CcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGLG--IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
+......|+.||++.+.+++.++.+++ +++.+|+||.+.++.... +.. ......+........+.
T Consensus 151 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~--------~~~----~~~~~~~~~~~p~~r~~ 217 (259)
T 3edm_A 151 -GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDT--------FTK----PEVRERVAGATSLKREG 217 (259)
T ss_dssp -CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC----------------------------------CCB
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCccccc--------ccC----hHHHHHHHhcCCCCCCc
Confidence 111237899999999999999987753 999999999998764211 100 00001111112234577
Q ss_pred cHHHHHHHHHHHHcCCC---CC-cEEecCCCccC
Q 013226 328 FVSDLVEGLIRLMEGDH---VG-PFNLGNPGEFT 357 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~s 357 (447)
+++|+|+++++++.... .| .+++.++...+
T Consensus 218 ~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~~ 251 (259)
T 3edm_A 218 SSEDVAGLVAFLASDDAAYVTGACYDINGGVLFS 251 (259)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSBC
T ss_pred CHHHHHHHHHHHcCccccCccCCEEEECCCcCCC
Confidence 99999999999997642 35 67776654443
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=184.04 Aligned_cols=226 Identities=12% Similarity=0.099 Sum_probs=154.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---cccccCCCceEEEeccccccc--------ccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIHHFGNPRFELIRHDVVEPI--------LLE 179 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~--------~~~ 179 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+. +........+..+.+|+.++. +.+
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~ 85 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPK 85 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCC
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCC
Confidence 456889999999999999999999999999999999864332211 111112346788889987753 347
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|++|||||......+.. +....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------- 149 (267)
T 3t4x_A 86 VDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIM---------------- 149 (267)
T ss_dssp CSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTS----------------
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhcc----------------
Confidence 999999999865544333 23457899999988777665 34454 999999988652
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCcc-------CCCchHHHHHHHHHhCCCeEEecCC
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCI-------DDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
+......|+.||++.+.+++.++.++ |+++.+|+||.+.++.... .............+... ...
T Consensus 150 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 224 (267)
T 3t4x_A 150 PSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKEN-----RPT 224 (267)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHH-----CTT
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhcc-----CCc
Confidence 22234789999999999999998765 7999999999988752100 00000011111111100 000
Q ss_pred CeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCccC
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFT 357 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s 357 (447)
.....+.+++|+|+++++++... ..| ++++.+|...+
T Consensus 225 ~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 225 SIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGGLVRS 265 (267)
T ss_dssp CSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTCSCS
T ss_pred ccccCccCHHHHHHHHHHHcCccccCccCCeEEECCCcccc
Confidence 11235789999999999999754 234 78887765544
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=173.01 Aligned_cols=208 Identities=15% Similarity=0.124 Sum_probs=148.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+++|+++||||+|+||++++++|+++|++|++++|+..... ...... .+.++.+|+.++. +.++
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLR-EAAEAV---GAHPVVMDVADPASVERGFAEALAHLGRL 78 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTT---TCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHc---CCEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57889999999999999999999999999999998643211 111111 2778889987753 1359
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----CC-eEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
|+||||||......... +....+++|+.|+.++++++.+. +. +||++||...++.+
T Consensus 79 d~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~--------------- 143 (245)
T 1uls_A 79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGNL--------------- 143 (245)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCCT---------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCCC---------------
Confidence 99999999764433222 24568899999999998887543 44 99999998744321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
....|+.+|+..+.+++.++.+ .|+++++|+||.+.++.... +............+. ..+.+
T Consensus 144 --~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~p~---------~~~~~ 208 (245)
T 1uls_A 144 --GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK----VPEKVREKAIAATPL---------GRAGK 208 (245)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS----SCHHHHHHHHHTCTT---------CSCBC
T ss_pred --CchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhh----cCHHHHHHHHhhCCC---------CCCcC
Confidence 1368999999999999998865 48999999999998875321 111222222222111 13689
Q ss_pred HHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 329 VSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 329 v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
++|+|+++++++.++ ..| .+.+.++.
T Consensus 209 ~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 238 (245)
T 1uls_A 209 PLEVAYAALFLLSDESSFITGQVLFVDGGR 238 (245)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHHHHHHhCchhcCCcCCEEEECCCc
Confidence 999999999999753 235 66666553
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=178.18 Aligned_cols=214 Identities=18% Similarity=0.140 Sum_probs=153.5
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++++.....+.+...+ ...++.++.+|+.+..
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999775433222222211 1346888999998763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+.++|+||||||........+ +....+++|+.|+.++++++.+. +.+||++||.....
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~--------------- 171 (271)
T 3v2g_A 107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL--------------- 171 (271)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC---------------
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc---------------
Confidence 236999999999865443322 24568999999999999998764 34999999965321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
.+......|+.||++.+.+++.++.++ |+++.+|+||.|.++...... .... ......+. ..+
T Consensus 172 ~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~-~~~~----~~~~~~~~---------~r~ 237 (271)
T 3v2g_A 172 VPWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADG-DHAE----AQRERIAT---------GSY 237 (271)
T ss_dssp CCSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSC-SSHH----HHHHTCTT---------SSC
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccc-hhHH----HHHhcCCC---------CCC
Confidence 112234789999999999999998765 899999999999988643221 1111 22222211 136
Q ss_pred ccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 327 QFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
..++|+|+++++++... ..| .+++.+|
T Consensus 238 ~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 268 (271)
T 3v2g_A 238 GEPQDIAGLVAWLAGPQGKFVTGASLTIDGG 268 (271)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCHHHHHHHHHHHhCcccCCccCCEEEeCcC
Confidence 78999999999998653 335 6677654
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=177.47 Aligned_cols=205 Identities=13% Similarity=0.006 Sum_probs=149.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCC---CeEEEEecCCCCCcccccccc-CCCceEEEecccccccc---------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRG---DSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPIL--------- 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G---~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~~--------- 177 (447)
..+++|+|+||||+|+||++++++|+++| ++|++++|+..... .+.... ...++.++.+|+.+...
T Consensus 17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 95 (267)
T 1sny_A 17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK-ELEDLAKNHSNIHILEIDLRNFDAYDKLVADIE 95 (267)
T ss_dssp ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH-HHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH-HHHHhhccCCceEEEEecCCChHHHHHHHHHHH
Confidence 45788999999999999999999999999 99999999754332 111110 12468899999987631
Q ss_pred ---c--CCCEEEEeccCCC-CCCcc----cChHHHHHHHHHHHHHHHHHHHHC----------------CCeEEEEeCcc
Q 013226 178 ---L--EVDQIYHLACPAS-PVHYK----FNPVKTIKTNVVGTLNMLGLAKRV----------------GARFLLTSTSE 231 (447)
Q Consensus 178 ---~--~~d~Vih~Ag~~~-~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~----------------g~r~v~~SS~~ 231 (447)
. ++|+||||||... ..... .+....+++|+.++.++++++.+. +.+||++||..
T Consensus 96 ~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~ 175 (267)
T 1sny_A 96 GVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL 175 (267)
T ss_dssp HHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred HhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccc
Confidence 1 6999999999765 22222 234568999999999999887543 34899999988
Q ss_pred ccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHH
Q 013226 232 VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQA 308 (447)
Q Consensus 232 v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~ 308 (447)
.+.... +..+...|+.+|++.+.+++.++.+ .+++++++|||.|..+....
T Consensus 176 ~~~~~~-------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------------- 229 (267)
T 1sny_A 176 GSIQGN-------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS------------- 229 (267)
T ss_dssp GCSTTC-------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT-------------
T ss_pred ccccCC-------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC-------------
Confidence 654211 1123468999999999999998876 58999999999998764210
Q ss_pred HhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCCcEEecCCCccC
Q 013226 309 LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVGPFNLGNPGEFT 357 (447)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g~~~i~~~~~~s 357 (447)
..++..+|+|+.++.++.+. ..|.|...+++.+.
T Consensus 230 ---------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~~ 266 (267)
T 1sny_A 230 ---------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLA 266 (267)
T ss_dssp ---------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBCC
T ss_pred ---------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEccCCcCcC
Confidence 02478899999999998754 34666665655554
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=180.78 Aligned_cols=214 Identities=11% Similarity=-0.017 Sum_probs=150.3
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~ 177 (447)
+++|+++||||+ |+||++++++|+++|++|++++|+.. ..+.+.... ....+.++.+|+.+.. +
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENW 97 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 678999999999 99999999999999999999998642 111111110 0123678889997753 2
Q ss_pred cCCCEEEEeccCCCC----CCc-c---cChHHHHHHHHHHHHHHHHHHHHC----CCeEEEEeCccccCCCCCCCCCCCc
Q 013226 178 LEVDQIYHLACPASP----VHY-K---FNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~----~~~-~---~~~~~~~~~Nv~gt~~ll~aa~~~----g~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
.++|+||||||.... ... + .+....+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------- 166 (285)
T 2p91_A 98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK----------- 166 (285)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS-----------
T ss_pred CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc-----------
Confidence 369999999997643 111 1 234568999999999999998664 24999999977542
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.|++|..... .....+........++
T Consensus 167 -----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~~p~-------- 231 (285)
T 2p91_A 167 -----VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSI--TGFHLLMEHTTKVNPF-------- 231 (285)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--C--TTHHHHHHHHHHHSTT--------
T ss_pred -----CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcc--cchHHHHHHHHhcCCC--------
Confidence 11223689999999999999998764 89999999999999864211 1112233322222221
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
..+.+++|+|+++++++... ..| .+++.++.
T Consensus 232 -~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg~ 266 (285)
T 2p91_A 232 -GKPITIEDVGDTAVFLCSDWARAITGEVVHVDNGY 266 (285)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred -CCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCCc
Confidence 13678999999999998653 235 67776653
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.2e-21 Score=177.73 Aligned_cols=212 Identities=19% Similarity=0.170 Sum_probs=150.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+ ..... ..++.++.+|+.++. +.+
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKA-AAASI-GKKARAIAADISDPGSVKALFAEIQALTGG 80 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-HHHHH-CTTEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 5688999999999999999999999999999999986432222 11111 346888999998763 236
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHH----HHHCC-C-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGL----AKRVG-A-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~a----a~~~g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+|+||||||......+.+ +....+++|+.|+.+++++ +++.+ . +||++||...+..
T Consensus 81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 146 (247)
T 3rwb_A 81 IDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAG-------------- 146 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHT--------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccC--------------
Confidence 999999999865443332 2456899999999999888 44544 3 9999999875421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.||++.+.+++.++.+ .|+++++|+||.|.++............+.... .+ ...+
T Consensus 147 --~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---~~---------~~r~ 212 (247)
T 3rwb_A 147 --TPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML---QA---------MKGK 212 (247)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH---SS---------SCSC
T ss_pred --CCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc---cc---------cCCC
Confidence 112378999999999999999876 589999999999987632111111111111100 11 1235
Q ss_pred ccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 327 QFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
...+|+|+++++++... ..| .+++.+|
T Consensus 213 ~~pedva~~v~~L~s~~~~~itG~~i~vdGG 243 (247)
T 3rwb_A 213 GQPEHIADVVSFLASDDARWITGQTLNVDAG 243 (247)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 68899999999999764 235 6666654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=181.11 Aligned_cols=220 Identities=12% Similarity=-0.015 Sum_probs=155.5
Q ss_pred ccccCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc---------
Q 013226 109 LGLQRKSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI--------- 176 (447)
Q Consensus 109 ~~~~~~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~--------- 176 (447)
....+++|+++||||+| +||++++++|+++|++|++++|+... .+.+.... ....+.++.+|+++..
T Consensus 24 ~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (296)
T 3k31_A 24 TGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETF-KKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVL 102 (296)
T ss_dssp CCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHH
T ss_pred chhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHH-HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH
Confidence 34567899999999997 99999999999999999999986421 11111110 1124678899998763
Q ss_pred ---ccCCCEEEEeccCCCC----CCcc----cChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCC
Q 013226 177 ---LLEVDQIYHLACPASP----VHYK----FNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQA 242 (447)
Q Consensus 177 ---~~~~d~Vih~Ag~~~~----~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~ 242 (447)
+.++|+||||||.... .... .+....+++|+.++.++++++...- .+||++||...+.
T Consensus 103 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~-------- 174 (296)
T 3k31_A 103 AEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK-------- 174 (296)
T ss_dssp HHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS--------
T ss_pred HHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc--------
Confidence 2369999999997642 1111 2355689999999999999987642 3899999987542
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecC
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.|.++.... ...............++
T Consensus 175 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~p~----- 239 (296)
T 3k31_A 175 --------VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSG--ISDFHYILTWNKYNSPL----- 239 (296)
T ss_dssp --------CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCS--CHHHHHHHHHHHHHSTT-----
T ss_pred --------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhc--ccchHHHHHHHHhcCCC-----
Confidence 12234789999999999999998764 8999999999999875321 11112222223322222
Q ss_pred CCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
..+..++|+|+++++++... ..| ++++.+|..+
T Consensus 240 ----~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 276 (296)
T 3k31_A 240 ----RRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCGYHV 276 (296)
T ss_dssp ----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ----CCCCCHHHHHHHHHHHcCCccCCccCCEEEECCCccc
Confidence 23577899999999999753 335 7777766544
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-21 Score=178.88 Aligned_cols=208 Identities=13% Similarity=0.104 Sum_probs=143.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-ecCCCCCcccccccc--CCCceEE-Eeccccccc------------cc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVV-DNYFTGKKDNLIHHF--GNPRFEL-IRHDVVEPI------------LL 178 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l-~r~~~~~~~~~~~~~--~~~~v~~-~~~D~~~~~------------~~ 178 (447)
+|+|+||||+|+||++++++|+++|++|+++ +|+.... +.+...+ ...++.. +.+|+.+.. +.
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKA-EEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG 79 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHH-HHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999998 6643221 1111111 1224555 888987753 24
Q ss_pred CCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccc-cCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEV-YGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v-~g~~~~~~~~e~~~~~ 248 (447)
++|+||||||........ .+....+++|+.|+.+++++ +++.+. +||++||... ++.+
T Consensus 80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~------------ 147 (245)
T 2ph3_A 80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNP------------ 147 (245)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCS------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCCC------------
Confidence 799999999976433222 23456899999996655554 455565 9999999864 3321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+...|+.+|++.+.+++.++.+. +++++++|||.++++.... +...+........+ ...
T Consensus 148 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~~ 209 (245)
T 2ph3_A 148 -----GQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTER----LPQEVKEAYLKQIP---------AGR 209 (245)
T ss_dssp -----SBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----SCHHHHHHHHHTCT---------TCS
T ss_pred -----CCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhh----cCHHHHHHHHhcCC---------CCC
Confidence 23689999999999999998765 8999999999999874321 11222222222221 124
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+++++|+|++++.++.++ ..| .|++.++
T Consensus 210 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 241 (245)
T 2ph3_A 210 FGRPEEVAEAVAFLVSEKAGYITGQTLCVDGG 241 (245)
T ss_dssp CBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 789999999999998754 234 7777654
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=180.35 Aligned_cols=213 Identities=12% Similarity=0.013 Sum_probs=148.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+|+||||+|+||+++++.|+++|++|++++|+..... .+...+ ...++.++.+|+.+.. +
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 119 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCD-SVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 119 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHH-HHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHH-HHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999887533211 111111 1346788999997763 1
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|+||||||......+. .+....+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------- 186 (285)
T 2c07_A 120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTG------------- 186 (285)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHC-------------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccC-------------
Confidence 4699999999976433222 2345689999999888877764 3455 9999999875421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.+|++.+.+++.++.+. |+++++++||.+.++.... +...+........+. ..
T Consensus 187 ---~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~~---------~~ 250 (285)
T 2c07_A 187 ---NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK----ISEQIKKNIISNIPA---------GR 250 (285)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---------CCHHHHHHHHTTCTT---------SS
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhh----cCHHHHHHHHhhCCC---------CC
Confidence 1123689999999999999988764 8999999999999875321 112222222222111 23
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
+++++|+|++++.++.++. .| .+++.++.
T Consensus 251 ~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 251 MGTPEEVANLACFLSSDKSGYINGRVFVIDGGL 283 (285)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCCc
Confidence 7899999999999997542 34 67776653
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=179.40 Aligned_cols=217 Identities=12% Similarity=-0.002 Sum_probs=150.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------ccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+++|++|||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+++.. +.+
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP 101 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999998643222111111 11346889999998763 236
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH------CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR------VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~------~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+|+||||||......... +....+++|+.|+.++++++.+ .+. +||++||...+.
T Consensus 102 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~-------------- 167 (279)
T 3sju_A 102 IGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ-------------- 167 (279)
T ss_dssp CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS--------------
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc--------------
Confidence 999999999865443332 2445788999999999998754 344 999999987542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC-------CCchHHHHHHHHHhCCCeEEec
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID-------DGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
+......|+.||++.+.+++.++.+ .|+++.+|+||.|.+|..... ................
T Consensus 168 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 239 (279)
T 3sju_A 168 --GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKI------ 239 (279)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTC------
T ss_pred --CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcC------
Confidence 2223378999999999999999876 589999999999987532100 0000112222222221
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
....+.+++|+|+++++++.+.. .| .+++.+|.
T Consensus 240 ---p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 240 ---PLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGGL 276 (279)
T ss_dssp ---TTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTTC
T ss_pred ---CCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 12246889999999999998652 34 77776653
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-21 Score=179.58 Aligned_cols=213 Identities=18% Similarity=0.160 Sum_probs=152.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++++|+++||||+|+||++++++|+++|++|++++|+.+... +...... .++.++.+|+.+.. +.+
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLA-EAVAALE-AEAIAVVADVSDPKAVEAVFAEALEEFGR 80 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHTCC-SSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhc-CceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999999998643221 1111111 46788999997763 235
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+|+||||||......... +....+++|+.|+.++++++... +.+||++||...++.+
T Consensus 81 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---------------- 144 (263)
T 2a4k_A 81 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAF---------------- 144 (263)
T ss_dssp CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHH----------------
T ss_pred CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCCC----------------
Confidence 899999999765433222 23568899999999999998764 3499999998865211
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
....|+.||+..+.+++.++.+. |+++++|+||.+.++..... ............++ ..+.++
T Consensus 145 -~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~p~---------~~~~~p 210 (263)
T 2a4k_A 145 -GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL----PPWAWEQEVGASPL---------GRAGRP 210 (263)
T ss_dssp -HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS----CHHHHHHHHHTSTT---------CSCBCH
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc----CHHHHHHHHhcCCC---------CCCcCH
Confidence 12679999999999999988654 89999999999998753211 12222222222221 236899
Q ss_pred HHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 330 SDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 330 ~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
+|+|+++++++.++ ..| .+++.++..+
T Consensus 211 ~dvA~~v~~l~s~~~~~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 211 EEVAQAALFLLSEESAYITGQALYVDGGRSI 241 (263)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTTTT
T ss_pred HHHHHHHHHHhCccccCCcCCEEEECCCccc
Confidence 99999999999754 335 6677665443
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=177.68 Aligned_cols=216 Identities=16% Similarity=0.117 Sum_probs=151.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
....+|+||||||+|+||++++++|+++|++|++++++............ ...++.++.+|+.+..
T Consensus 9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (256)
T 3ezl_A 9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE 88 (256)
T ss_dssp ----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999854443332222111 2346888999997753
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 155 (256)
T 3ezl_A 89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK------------- 155 (256)
T ss_dssp TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG-------------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc-------------
Confidence 236899999999865433322 34568999999988887775 44455 999999987542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.||++.+.+++.++.+ .|+++.+++||.+.++.... +...+........++ .
T Consensus 156 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~~~---------~ 219 (256)
T 3ezl_A 156 ---GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA----IRPDVLEKIVATIPV---------R 219 (256)
T ss_dssp ---SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----SCHHHHHHHHHHSTT---------S
T ss_pred ---CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccc----cCHHHHHHHHhcCCC---------C
Confidence 2223478999999999999999876 48999999999998764211 112333333332221 2
Q ss_pred ccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 325 SFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
.+.+++|+|+++++++... ..| .+++.+|..
T Consensus 220 ~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~~ 254 (256)
T 3ezl_A 220 RLGSPDEIGSIVAWLASEESGFSTGADFSLNGGLH 254 (256)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred CCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCEe
Confidence 3678999999999998653 234 777776644
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-21 Score=182.41 Aligned_cols=222 Identities=17% Similarity=0.103 Sum_probs=153.5
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCC--------ccccc---cc--cCCCceEEEeccccccc
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGK--------KDNLI---HH--FGNPRFELIRHDVVEPI 176 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~--------~~~~~---~~--~~~~~v~~~~~D~~~~~ 176 (447)
...+++|+++||||+|+||++++++|+++|++|++++|+.... .+.+. .. ....++.++.+|+.+..
T Consensus 23 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 102 (299)
T 3t7c_A 23 AGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFD 102 (299)
T ss_dssp CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 3467899999999999999999999999999999999863321 11111 00 12346889999998763
Q ss_pred ------------ccCCCEEEEeccCCCCCC-cc----cChHHHHHHHHHHHHHHHHHHHHC----C-C-eEEEEeCcccc
Q 013226 177 ------------LLEVDQIYHLACPASPVH-YK----FNPVKTIKTNVVGTLNMLGLAKRV----G-A-RFLLTSTSEVY 233 (447)
Q Consensus 177 ------------~~~~d~Vih~Ag~~~~~~-~~----~~~~~~~~~Nv~gt~~ll~aa~~~----g-~-r~v~~SS~~v~ 233 (447)
+.++|+||||||...... .. ++....+++|+.|+.++++++... + . +||++||...+
T Consensus 103 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~ 182 (299)
T 3t7c_A 103 AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGL 182 (299)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhc
Confidence 236999999999765432 22 234568999999999999986442 3 3 99999998754
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCC----------Cch
Q 013226 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDD----------GRV 300 (447)
Q Consensus 234 g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~----------~~~ 300 (447)
. +......|+.||++.+.+++.++.++ |+++.+|+||.|.+|...... ...
T Consensus 183 ~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~ 246 (299)
T 3t7c_A 183 R----------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPT 246 (299)
T ss_dssp S----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCC
T ss_pred c----------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccch
Confidence 2 12223789999999999999998765 899999999999987532100 000
Q ss_pred HHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 301 VSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
...+.......... . ..+..++|+|+++++++.+. ..| .+++.+|..
T Consensus 247 ~~~~~~~~~~~~~~-------p-~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~ 297 (299)
T 3t7c_A 247 VEDFQVASRQMHVL-------P-IPYVEPADISNAILFLVSDDARYITGVSLPVDGGAL 297 (299)
T ss_dssp HHHHHHHHHHHSSS-------S-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hhHHHHHhhhhccc-------C-cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCCcc
Confidence 00000000000000 1 24778999999999999754 235 777776543
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=177.93 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=151.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+.....+ ...++.++.+|+.+..
T Consensus 25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 104 (283)
T 1g0o_A 25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 104 (283)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999986432211111111 1246788899987753
Q ss_pred ccCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHC--CC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 177 LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRV--GA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~--g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+.++|+||||||........ .+....+++|+.|+.++++++.+. +. +||++||...+..
T Consensus 105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-------------- 170 (283)
T 1g0o_A 105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK-------------- 170 (283)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS--------------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccC--------------
Confidence 23699999999976543322 234568999999999999998875 43 9999999875421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCcc------CCC-chHHHHHHHHHh--CCCeEEe
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCI------DDG-RVVSNFVAQALR--KEPLTVY 317 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~------~~~-~~~~~~~~~~~~--~~~~~~~ 317 (447)
.......|+.||++.+.+++.++.+ .|+++++|+||.+.++.... ... ............ ..+
T Consensus 171 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---- 245 (283)
T 1g0o_A 171 -AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSP---- 245 (283)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCT----
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCCC----
Confidence 0112378999999999999999865 48999999999998863110 000 000111111111 111
Q ss_pred cCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 318 GDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 318 ~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
...+.+++|+|+++++++... ..| .+++.+|
T Consensus 246 -----~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG 280 (283)
T 1g0o_A 246 -----LRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGG 280 (283)
T ss_dssp -----TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -----CCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCC
Confidence 123678999999999999754 335 6666654
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-21 Score=178.00 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=149.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc------------cc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------~~ 178 (447)
++++|+|+||||+|+||++++++|+++|++|++++|+..... ...... ...++.++.+|+.+.. +.
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGE-KAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFG 81 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999998643221 111111 1146889999997753 13
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCC--CeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVG--ARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
++|+||||||......... +....+++|+.|+.++++++ ++.+ .+||++||...+..
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------------- 148 (251)
T 1zk4_A 82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG------------- 148 (251)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC-------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccC-------------
Confidence 5999999999764332222 24568999999887776664 3444 38999999886532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHh-----hhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHR-----GLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
..+...|+.+|++.+.+++.++. ..+++++++|||.+++|...... ......... ... ..
T Consensus 149 ---~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~----~~~~~~~~~-~~~-------~~ 213 (251)
T 1zk4_A 149 ---DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP----GAEEAMSQR-TKT-------PM 213 (251)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTST----THHHHHTST-TTC-------TT
T ss_pred ---CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcC----chhhhHHHh-hcC-------CC
Confidence 11237899999999999998875 35899999999999987432110 001111010 111 11
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
..+++++|+|+++++++.++ ..| .+++.++..
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 214 GHIGEPNDIAYICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHcCcccccccCcEEEECCCcc
Confidence 34789999999999999754 234 777776543
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-20 Score=172.89 Aligned_cols=205 Identities=17% Similarity=0.139 Sum_probs=144.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+... .+.++.+|+.++. +.+
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~----------~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 87 (253)
T 2nm0_A 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE----------GFLAVKCDITDTEQVEQAYKEIEETHGP 87 (253)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT----------TSEEEECCTTSHHHHHHHHHHHHHHTCS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc----------cceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999998643211 2677888987753 235
Q ss_pred CCEEEEeccCCCCCC----cccChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||...... ...+....+++|+.|+.++++++.+ .+. +||++||...+..
T Consensus 88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~--------------- 152 (253)
T 2nm0_A 88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLG--------------- 152 (253)
T ss_dssp CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCC---------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC---------------
Confidence 899999999764322 2234677899999999999887643 355 9999999865321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
......|+.+|++.+.+++.++.+. ++++++|+||.+.++.... +............+ ...++
T Consensus 153 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~p---------~~~~~ 218 (253)
T 2nm0_A 153 -SAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV----LTDEQRANIVSQVP---------LGRYA 218 (253)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC-------------CHHHHHTTCT---------TCSCB
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh----cCHHHHHHHHhcCC---------CCCCc
Confidence 1123689999999999999998764 7999999999998764211 00111111111111 12478
Q ss_pred cHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 328 FVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
+.+|+|+++++++.++ ..| .+.+.++..
T Consensus 219 ~p~dvA~~i~~l~s~~~~~~tG~~i~vdGG~~ 250 (253)
T 2nm0_A 219 RPEEIAATVRFLASDDASYITGAVIPVDGGLG 250 (253)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhCccccCCcCcEEEECCccc
Confidence 9999999999999764 235 666665543
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=176.97 Aligned_cols=215 Identities=13% Similarity=0.034 Sum_probs=151.8
Q ss_pred ccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc----------
Q 013226 109 LGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI---------- 176 (447)
Q Consensus 109 ~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~---------- 176 (447)
...++++|+|+||||+|+||++++++|+++|++|++++++.....+.....+ ...++.++.+|+++..
T Consensus 20 ~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (267)
T 4iiu_A 20 FQSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEI 99 (267)
T ss_dssp -----CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3345688999999999999999999999999999887654332222211111 2347889999998763
Q ss_pred --ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH-----HCCC-eEEEEeCccccCCCCCCCCCCC
Q 013226 177 --LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK-----RVGA-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~-----~~g~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
..++|+||||||......+.. +....+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 100 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 170 (267)
T 4iiu_A 100 AQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMG--------- 170 (267)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHC---------
T ss_pred HHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccC---------
Confidence 136999999999865443322 345689999999999999863 3444 9999999874421
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
......|+.+|++.+.+++.++.++ |+++.+++||.+.++..... ...........++
T Consensus 171 -------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-----~~~~~~~~~~~p~------- 231 (267)
T 4iiu_A 171 -------NRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME-----ESALKEAMSMIPM------- 231 (267)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC-----HHHHHHHHHTCTT-------
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc-----HHHHHHHHhcCCC-------
Confidence 1123789999999999999988765 89999999999998764221 3333444443322
Q ss_pred eeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
..+.+++|+|+++++++... ..| .+++.+|
T Consensus 232 --~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 232 --KRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp --CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 23678999999999999754 235 6666654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=177.86 Aligned_cols=214 Identities=17% Similarity=0.119 Sum_probs=150.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~----------- 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+.+..
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASE-AAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 95 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999986432211 11111 1235788899998763
Q ss_pred -ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 -LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|+||||||......+.. +....+++|+.|+.++++++. +.+. +||++||..+..
T Consensus 96 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~------------ 163 (267)
T 1vl8_A 96 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE------------ 163 (267)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC------------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhc------------
Confidence 236999999999765433222 245688999999999988774 3444 999999986310
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchH--HHHHHHHHhCCCeEEecCCC
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVV--SNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 321 (447)
.+......|+.+|++.+.+++.++.+ .|+++++|+||.+.++... .+. ...........++
T Consensus 164 ---~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p~------- 229 (267)
T 1vl8_A 164 ---VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTE----AVFSDPEKLDYMLKRIPL------- 229 (267)
T ss_dssp ---CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTH----HHHTCHHHHHHHHHTCTT-------
T ss_pred ---cCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccc----ccccChHHHHHHHhhCCC-------
Confidence 11223478999999999999999876 4899999999999887421 110 1122222222111
Q ss_pred eeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
..+++++|+|+++++++... ..| .+.+.+|
T Consensus 230 --~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 263 (267)
T 1vl8_A 230 --GRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 263 (267)
T ss_dssp --SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CCCcCHHHHHHHHHHHcCccccCCcCCeEEECCC
Confidence 23678999999999999753 235 5666554
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=173.81 Aligned_cols=192 Identities=11% Similarity=0.045 Sum_probs=142.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEecCCCCCcccccccc--CCCceEEEeccccccc---------
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-------SVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI--------- 176 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-------~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~--------- 176 (447)
+|+|+||||+|+||++++++|+++|+ +|++++|+.... +.+...+ ...++.++.+|+.+..
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADL-EKISLECRAEGALTDTITADISDMADVRRLTTHI 80 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHH-HHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHH-HHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence 57899999999999999999999999 999999864321 1111111 1346889999998763
Q ss_pred ---ccCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCC
Q 013226 177 ---LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 ---~~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+.++|+||||||........ .+....+++|+.|+.++++++.+ .+. +||++||...+..
T Consensus 81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~--------- 151 (244)
T 2bd0_A 81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKA--------- 151 (244)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC---------
T ss_pred HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCC---------
Confidence 13699999999976443222 23556899999999999988743 354 9999999887632
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
..+...|+.+|++.+.+++.++.+ .|++++++|||.+++|....... ..
T Consensus 152 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-------------~~-------- 203 (244)
T 2bd0_A 152 -------FRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD-------------EM-------- 203 (244)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS-------------TT--------
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc-------------cc--------
Confidence 223478999999999999888764 58999999999999986321100 00
Q ss_pred eeEccccHHHHHHHHHHHHcCCCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~~ 345 (447)
...+++++|+|++++.++.++..
T Consensus 204 -~~~~~~~~dva~~~~~l~~~~~~ 226 (244)
T 2bd0_A 204 -QALMMMPEDIAAPVVQAYLQPSR 226 (244)
T ss_dssp -GGGSBCHHHHHHHHHHHHTSCTT
T ss_pred -cccCCCHHHHHHHHHHHHhCCcc
Confidence 12579999999999999987643
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=185.15 Aligned_cols=232 Identities=11% Similarity=0.060 Sum_probs=158.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCC---ceEEEeccccccc----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNP---RFELIRHDVVEPI---------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~---~v~~~~~D~~~~~---------- 176 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+ ....+ ... ++.++.+|+.+..
T Consensus 23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 101 (297)
T 1xhl_A 23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEE-TKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 101 (297)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999986432211 11111 112 6888999998763
Q ss_pred --ccCCCEEEEeccCCCCCC--cc----cChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCC
Q 013226 177 --LLEVDQIYHLACPASPVH--YK----FNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~~~--~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+.++|+||||||...... .. ++....+++|+.|+.++++++.+ .+.+||++||...+...
T Consensus 102 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~~-------- 173 (297)
T 1xhl_A 102 AKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQA-------- 173 (297)
T ss_dssp HHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSC--------
T ss_pred HhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccCC--------
Confidence 236999999999754332 22 12456899999999999888754 33599999998765321
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCC-Cch----HHHHHHHHHhCCCeEE
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDD-GRV----VSNFVAQALRKEPLTV 316 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~-~~~----~~~~~~~~~~~~~~~~ 316 (447)
......|+.+|++.+.+++.++.+ .|+++++|+||.+.++...... ... ...+....... .
T Consensus 174 -------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~--~-- 242 (297)
T 1xhl_A 174 -------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKEC--I-- 242 (297)
T ss_dssp -------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT--C--
T ss_pred -------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhc--C--
Confidence 012368999999999999998865 5899999999999987421100 000 00111111111 1
Q ss_pred ecCCCeeEccccHHHHHHHHHHHHcCC----CCC-cEEecCCCccCHHHHHHHHHHH
Q 013226 317 YGDGKQTRSFQFVSDLVEGLIRLMEGD----HVG-PFNLGNPGEFTMLELAEVVQEI 368 (447)
Q Consensus 317 ~~~~~~~~~~i~v~D~a~ai~~~l~~~----~~g-~~~i~~~~~~s~~el~~~i~~~ 368 (447)
....+.+++|+|+++++++..+ ..| .+++.++..+.+.+.+..+.+.
T Consensus 243 -----p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~ 294 (297)
T 1xhl_A 243 -----PVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMSV 294 (297)
T ss_dssp -----TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHHH
T ss_pred -----CCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhhh
Confidence 1124789999999999998754 345 7777777666666655444443
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-21 Score=180.23 Aligned_cols=213 Identities=15% Similarity=0.105 Sum_probs=143.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++|+|+||||+|+||++++++|+++|++|++++++.....+.+.... ...++.++.+|+.+.. +.+
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 104 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGR 104 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 56889999999999999999999999999887543222222221111 2347889999998763 236
Q ss_pred CCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHHHHC-------CC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 180 VDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLAKRV-------GA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 180 ~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~-------g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+|+||||||.... .... .+..+.+++|+.|+.++++++... +. +||++||...+...
T Consensus 105 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 174 (272)
T 4e3z_A 105 LDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGS---------- 174 (272)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCC----------
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCC----------
Confidence 9999999997643 2222 234568999999999999887543 23 89999998754221
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.||++.+.+++.++.++ |+++++++||.|+++.... ............. ...
T Consensus 175 -----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~---~~~~~~~~~~~~~---------~~~ 237 (272)
T 4e3z_A 175 -----ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHAS---GGLPDRAREMAPS---------VPM 237 (272)
T ss_dssp -----TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---------------------C---------CTT
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccc---cCChHHHHHHhhc---------CCc
Confidence 1112579999999999999998765 8999999999999875311 0111111111111 112
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
..+.+++|+|+++++++... ..| .+++.+|
T Consensus 238 ~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 238 QRAGMPEEVADAILYLLSPSASYVTGSILNVSGG 271 (272)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCcCHHHHHHHHHHHhCCccccccCCEEeecCC
Confidence 34678999999999999754 234 7777664
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=187.75 Aligned_cols=229 Identities=14% Similarity=0.083 Sum_probs=161.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC---------CCcccccccc--CCCceEEEeccccccc----
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT---------GKKDNLIHHF--GNPRFELIRHDVVEPI---- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~---------~~~~~~~~~~--~~~~v~~~~~D~~~~~---- 176 (447)
.+++|++|||||+|+||++++++|+++|++|++++|+.. ...+.....+ ...++.++.+|+.+..
T Consensus 24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 103 (322)
T 3qlj_A 24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAG 103 (322)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence 468899999999999999999999999999999998621 1111111111 1346888999998763
Q ss_pred --------ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC-----------CCeEEEEeCcccc
Q 013226 177 --------LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV-----------GARFLLTSTSEVY 233 (447)
Q Consensus 177 --------~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~-----------g~r~v~~SS~~v~ 233 (447)
+.++|+||||||......... +....+++|+.|+.++++++... +.+||++||...+
T Consensus 104 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~ 183 (322)
T 3qlj_A 104 LIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGL 183 (322)
T ss_dssp HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHc
Confidence 136999999999865443322 24568999999999999887432 1389999998754
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHh
Q 013226 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALR 310 (447)
Q Consensus 234 g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~ 310 (447)
.. ......|+.||++.+.+++.++.+ .|+++++|+|| +..+......... .
T Consensus 184 ~~----------------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~----~----- 237 (322)
T 3qlj_A 184 QG----------------SVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEM----M----- 237 (322)
T ss_dssp HC----------------BTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC-----------
T ss_pred cC----------------CCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhh----h-----
Confidence 21 112378999999999999999876 58999999999 6654321110100 0
Q ss_pred CCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCc-----------------cCHHHHHHHHHHHh
Q 013226 311 KEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGE-----------------FTMLELAEVVQEII 369 (447)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~-----------------~s~~el~~~i~~~~ 369 (447)
........++.++|+|+++++++.... .| .+++.+|.. +++.|+++.+.+.+
T Consensus 238 -------~~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~ 310 (322)
T 3qlj_A 238 -------ATQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLL 310 (322)
T ss_dssp -------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHH
T ss_pred -------hccccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHh
Confidence 001112346789999999999987542 34 677766543 37799999999999
Q ss_pred CCCC
Q 013226 370 DRNA 373 (447)
Q Consensus 370 g~~~ 373 (447)
+.+.
T Consensus 311 ~~~~ 314 (322)
T 3qlj_A 311 GKAR 314 (322)
T ss_dssp HHSC
T ss_pred hccC
Confidence 8653
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-21 Score=186.42 Aligned_cols=215 Identities=16% Similarity=0.065 Sum_probs=139.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---cccccCCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIHHFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+||||||+||||++++++|+++|++|++++|+.....+. +........+.++.+|+++..
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999964432211 111111237889999998763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC-----------CCeEEEEeCccccCCCCCCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV-----------GARFLLTSTSEVYGDPLQHPQ 241 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~-----------g~r~v~~SS~~v~g~~~~~~~ 241 (447)
..++|+||||||+........ +....+++|+.|+.++++++... +.+||++||...+..
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~------ 158 (319)
T 3ioy_A 85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLA------ 158 (319)
T ss_dssp TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCC------
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccC------
Confidence 136899999999765433322 24568999999999999886542 237999999886532
Q ss_pred CCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEec
Q 013226 242 AETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 242 ~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
......|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ......+.............
T Consensus 159 ----------~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~~~~~~~ 226 (319)
T 3ioy_A 159 ----------AGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASD--DIRPDALKGEVKPVDKTAVE 226 (319)
T ss_dssp ----------CSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-----------------------------
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCccccc--ccCchhhcccccchhHHHHH
Confidence 112368999999888888887654 489999999999988753211 00011111000000000000
Q ss_pred CC-CeeEccccHHHHHHHHHHHHcCCC
Q 013226 319 DG-KQTRSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 319 ~~-~~~~~~i~v~D~a~ai~~~l~~~~ 344 (447)
.. ......++++|+|++++.+++++.
T Consensus 227 ~~~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 227 RLAGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp --CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 00 011123899999999999999865
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-21 Score=180.84 Aligned_cols=222 Identities=15% Similarity=0.066 Sum_probs=150.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+..... +....+ ...++.++.+|+.++.
T Consensus 24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (283)
T 3v8b_A 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVE-EVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLK 102 (283)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999998643222 111111 1346888999998763
Q ss_pred ccCCCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 LLEVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|+||||||.... .... .+....+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 103 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~----------- 171 (283)
T 3v8b_A 103 FGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRT----------- 171 (283)
T ss_dssp HSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB-----------
T ss_pred hCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccC-----------
Confidence 2369999999997533 2221 124568999999999999987 44554 9999999875421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
.+......|+.||++.+.+++.++.+ .|+++.+|+||.|.++......... . .....+..........
T Consensus 172 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~-~-----~~~~~~~~~~~~~~p~ 242 (283)
T 3v8b_A 172 ---FTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRH-E-----EETAIPVEWPKGQVPI 242 (283)
T ss_dssp ---CCSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCC-H-----HHHSCCCBCTTCSCGG
T ss_pred ---CCCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCccccccccc-c-----hhhhhhhhhhhhcCcc
Confidence 12223478999999999999999876 4799999999999987542111000 0 0001111111111111
Q ss_pred --EccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 324 --RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 324 --~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
..+..++|+|+++++++.+. ..| .+++.+|
T Consensus 243 ~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 278 (283)
T 3v8b_A 243 TDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDGG 278 (283)
T ss_dssp GTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ccCCCCCHHHHHHHHHHHcCccccCCcCCEEEECcC
Confidence 23678999999999999754 235 6666554
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=178.63 Aligned_cols=215 Identities=18% Similarity=0.058 Sum_probs=153.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+..... .+...+ ...++.++.+|+++..
T Consensus 28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 106 (276)
T 3r1i_A 28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQ-VVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGE 106 (276)
T ss_dssp GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH-HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999644322 111111 1346788999998763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|+||||||........+ +.+..+++|+.|+.++++++.+ .+ .+||++||...+..
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~----------- 175 (276)
T 3r1i_A 107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHII----------- 175 (276)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC-----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhccc-----------
Confidence 136999999999875544333 2445789999999999988644 22 48999999875421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
....+...|+.||++.+.+++.++.+ .++++++|+||.|.++..... ..+........++
T Consensus 176 ---~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-----~~~~~~~~~~~p~--------- 238 (276)
T 3r1i_A 176 ---NIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL-----ADYHALWEPKIPL--------- 238 (276)
T ss_dssp ---CCSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG-----GGGHHHHGGGSTT---------
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-----hHHHHHHHhcCCC---------
Confidence 11112378999999999999999876 589999999999998754211 1122222222111
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
..+..++|+|+++++++... ..| ++++.+|.
T Consensus 239 ~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 273 (276)
T 3r1i_A 239 GRMGRPEELTGLYLYLASAASSYMTGSDIVIDGGY 273 (276)
T ss_dssp SSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCcCHHHHHHHHHHHcCccccCccCcEEEECcCc
Confidence 23678899999999999754 235 67776553
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-20 Score=170.93 Aligned_cols=207 Identities=13% Similarity=0.070 Sum_probs=146.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----------ccCCCEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----------LLEVDQI 183 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----------~~~~d~V 183 (447)
+|+++||||+|+||++++++|+++|++|++++|+... ..... .+.++.+|+.+.. +.++|+|
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~g~id~l 74 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE----AAQSL---GAVPLPTDLEKDDPKGLVKRALEALGGLHVL 74 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHH---TCEEEECCTTTSCHHHHHHHHHHHHTSCCEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHhh---CcEEEecCCchHHHHHHHHHHHHHcCCCCEE
Confidence 5789999999999999999999999999999996433 11112 2677888887631 2369999
Q ss_pred EEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 184 YHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 184 ih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
|||||........ .+....+++|+.++.++++++. +.+. +||++||...+... +..+
T Consensus 75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------~~~~ 140 (239)
T 2ekp_A 75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG--------------GPVP 140 (239)
T ss_dssp EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------TTSC
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC--------------CCCC
Confidence 9999976433222 2355689999999999888873 4455 99999998876431 0123
Q ss_pred CChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHH
Q 013226 255 RSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 331 (447)
...|+.||++.+.+++.++.+. |+++++++||.+.++....... ...+........+ ...+.+++|
T Consensus 141 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~p---------~~~~~~~~d 209 (239)
T 2ekp_A 141 IPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQ--NPELYEPITARIP---------MGRWARPEE 209 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT--CHHHHHHHHTTCT---------TSSCBCHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhcccc--CHHHHHHHHhcCC---------CCCCcCHHH
Confidence 4789999999999999998764 8999999999999874210000 0112222222111 123789999
Q ss_pred HHHHHHHHHcCC---CCC-cEEecCC
Q 013226 332 LVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 332 ~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+|+++++++.++ ..| .+++.++
T Consensus 210 vA~~~~~l~s~~~~~~tG~~~~vdgG 235 (239)
T 2ekp_A 210 IARVAAVLCGDEAEYLTGQAVAVDGG 235 (239)
T ss_dssp HHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHcCchhcCCCCCEEEECCC
Confidence 999999998753 245 5666554
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=179.58 Aligned_cols=214 Identities=13% Similarity=-0.016 Sum_probs=150.8
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------~ 177 (447)
+++|+++||||+ |+||++++++|+++|++|++++|+.. ..+....... ...+.++.+|+.+.. +
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL 82 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 578999999999 99999999999999999999999753 1111111100 123678889997753 2
Q ss_pred cCCCEEEEeccCCCC----CCc-c---cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcC
Q 013226 178 LEVDQIYHLACPASP----VHY-K---FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~----~~~-~---~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
.++|+||||||.... ..+ + .+....+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~------------ 150 (275)
T 2pd4_A 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK------------ 150 (275)
T ss_dssp SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS------------
T ss_pred CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC------------
Confidence 368999999997643 112 1 234568999999999999999775 34999999976532
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.+.++...... ....+........++
T Consensus 151 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p~--------- 215 (275)
T 2pd4_A 151 ----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIA--DFRMILKWNEINAPL--------- 215 (275)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGST--THHHHHHHHHHHSTT---------
T ss_pred ----CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhcc--ccHHHHHHHHhcCCc---------
Confidence 11223679999999999999998765 899999999999987532111 112222222222221
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
..+.+++|+|+++++++... ..| .+++.++.
T Consensus 216 ~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg~ 250 (275)
T 2pd4_A 216 RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 250 (275)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 12568899999999999753 245 56666553
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=179.02 Aligned_cols=217 Identities=15% Similarity=0.084 Sum_probs=151.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc--cCCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH--FGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++++.....+..... ....++.++.+|+.+.. +
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 101 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF 101 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 357889999999999999999999999999999986433222211111 12346889999998763 1
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|+||||||......... +....+++|+.++.++++++.. .+. +||++||...+..
T Consensus 102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------- 168 (269)
T 3gk3_A 102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRG------------- 168 (269)
T ss_dssp SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC-------------
T ss_pred CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccC-------------
Confidence 36999999999865443322 3456899999999999888643 444 9999999875421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.||++.+.+++.++.++ |+++.+++||.+.++.... .... ..... +........
T Consensus 169 ---~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~----~~~~~----~~~~~~~~~ 233 (269)
T 3gk3_A 169 ---AFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEA----VPQD----VLEAK----ILPQIPVGR 233 (269)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC---------------CC----SGGGCTTSS
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhh----hchh----HHHHH----hhhcCCcCC
Confidence 1223789999999999999998764 8999999999998875321 1011 11100 001111234
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCCCcc
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGEF 356 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~~ 356 (447)
+.+++|+|+++++++.... .| .+++.+|..+
T Consensus 234 ~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~ 268 (269)
T 3gk3_A 234 LGRPDEVAALIAFLCSDDAGFVTGADLAINGGMHM 268 (269)
T ss_dssp CBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTSCC
T ss_pred ccCHHHHHHHHHHHhCCCcCCeeCcEEEECCCEeC
Confidence 6789999999999998653 34 7888877654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=175.85 Aligned_cols=217 Identities=11% Similarity=-0.003 Sum_probs=154.3
Q ss_pred cCCCCeEEEEcCCCh--hHHHHHHHHHhCCCeEEEEecCCCCCc--cccccccCCCceEEEecccccccc----------
Q 013226 112 QRKSLRILVTGGAGF--VGSHLVDRLMDRGDSVIVVDNYFTGKK--DNLIHHFGNPRFELIRHDVVEPIL---------- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~--IG~~l~~~L~~~G~~V~~l~r~~~~~~--~~~~~~~~~~~v~~~~~D~~~~~~---------- 177 (447)
++++|+++||||+|+ ||++++++|+++|++|++++|+..... .++.......++.++.+|+++...
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE 83 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence 568899999999977 999999999999999999998632111 111122233378899999987631
Q ss_pred --cCCCEEEEeccCCCC----CCcc-c---ChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCC
Q 013226 178 --LEVDQIYHLACPASP----VHYK-F---NPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 178 --~~~d~Vih~Ag~~~~----~~~~-~---~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
.++|+||||||.... .... . .....+++|+.++.++++++...- .+||++||...+.
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------- 153 (266)
T 3oig_A 84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL---------- 153 (266)
T ss_dssp HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS----------
T ss_pred HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc----------
Confidence 369999999997642 1111 1 245688999999999999987652 3899999987542
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.+.++...... ....+........++
T Consensus 154 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~~~------- 218 (266)
T 3oig_A 154 ------VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGIS--DFNSILKDIEERAPL------- 218 (266)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT--THHHHHHHHHHHSTT-------
T ss_pred ------cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccc--chHHHHHHHHhcCCC-------
Confidence 12223789999999999999998764 899999999999886532111 112333333332221
Q ss_pred eeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
..+.+++|+|+++++++.+. ..| .+++.+|-.
T Consensus 219 --~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG~~ 254 (266)
T 3oig_A 219 --RRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFH 254 (266)
T ss_dssp --SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred --CCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCCeE
Confidence 23678999999999999753 234 677766543
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-20 Score=172.29 Aligned_cols=205 Identities=18% Similarity=0.126 Sum_probs=142.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... .+ ..+.+|+.+.. +.+
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~---------~~~~~D~~~~~~~~~~~~~~~~~~g~ 81 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-GL---------FGVEVDVTDSDAVDRAFTAVEEHQGP 81 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-TS---------EEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH-Hh---------cCeeccCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999999643221 11 13677887652 236
Q ss_pred CCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|+||||||........ ++....+++|+.|+.++++++.+ .+. +||++||...+..
T Consensus 82 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 146 (247)
T 1uzm_A 82 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWG--------------- 146 (247)
T ss_dssp CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC------------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccC---------------
Confidence 89999999976432221 23556899999999999987743 455 9999999864321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
......|+.||++.+.+++.++.+ .|+++++++||.+.++.... +............+ ...+.
T Consensus 147 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~p---------~~~~~ 212 (247)
T 1uzm_A 147 -IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA----LDERIQQGALQFIP---------AKRVG 212 (247)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH----SCHHHHHHHGGGCT---------TCSCB
T ss_pred -CCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhh----cCHHHHHHHHhcCC---------CCCCc
Confidence 112368999999999999998876 48999999999998753110 00111111111111 12378
Q ss_pred cHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 328 FVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
+++|+|+++++++..+ ..| .+++.++..
T Consensus 213 ~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 213 TPAEVAGVVSFLASEDASYISGAVIPVDGGMG 244 (247)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHcCccccCCcCCEEEECCCcc
Confidence 9999999999999753 234 677776543
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=182.29 Aligned_cols=217 Identities=15% Similarity=0.067 Sum_probs=154.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------c
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~ 177 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+.. +
T Consensus 22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQG 101 (271)
T ss_dssp GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999999999998643222111111 11346888999998763 1
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|+||||||+........ +....+++|+.|+.++++++.+ .+. +||++||...+.
T Consensus 102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~-------------- 167 (271)
T 4ibo_A 102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSEL-------------- 167 (271)
T ss_dssp CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCC--------------
Confidence 36999999999865443322 3456899999999999877644 344 999999987532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchH--HHHHHHHHhCCCeEEecCCCee
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVV--SNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
+......|+.||++.+.+++.++.+ .|+++.+|+||.+.++... .+. ..+........++
T Consensus 168 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p~--------- 232 (271)
T 4ibo_A 168 --ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQ----ALIDNPEFDAWVKARTPA--------- 232 (271)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH----HHHHCHHHHHHHHHHSTT---------
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchh----hcccCHHHHHHHHhcCCC---------
Confidence 2223478999999999999999876 5899999999999987421 010 1222222222222
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
..+.+++|+|+++++++... ..| .+++.+|...
T Consensus 233 ~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~ 269 (271)
T 4ibo_A 233 KRWGKPQELVGTAVFLSASASDYVNGQIIYVDGGMLS 269 (271)
T ss_dssp CSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCcEEEECCCeec
Confidence 23677899999999998754 234 7788776543
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-20 Score=177.45 Aligned_cols=219 Identities=16% Similarity=0.097 Sum_probs=153.8
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++++.....+.+...+ ...++.++.+|+++..
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998875433222222211 2346889999998763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+.++|+||||||........+ +....+++|+.|+.++++++.+. +.+||++||.....
T Consensus 94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 158 (270)
T 3is3_A 94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD--------------- 158 (270)
T ss_dssp HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT---------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc---------------
Confidence 236999999999865443322 35568999999999999998765 23999999976211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCC--------CchHHHHHHHHHhCCCeEEec
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDD--------GRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 318 (447)
.+......|+.||++.+.+++.++.+ .|+++.+|+||.+.++...... ...............+
T Consensus 159 ~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 233 (270)
T 3is3_A 159 FSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASP----- 233 (270)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHST-----
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCC-----
Confidence 12223478999999999999999876 4899999999999987531000 0001111111222111
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
...+.+++|+|+++++++... ..| .+++.+|
T Consensus 234 ----~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 268 (270)
T 3is3_A 234 ----LHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGG 268 (270)
T ss_dssp ----TCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ----CCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCCC
Confidence 123678999999999999754 235 6677654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-21 Score=179.98 Aligned_cols=202 Identities=15% Similarity=0.120 Sum_probs=136.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+ ..... ..++.++.+|+++.. +.+
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 102 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQE-TAAEI-GDDALCVPTDVTDPDSVRALFTATVEKFGR 102 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHH-TSCCEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHh-CCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4578899999999999999999999999999999986432221 11112 246788999998763 237
Q ss_pred CCEEEEeccCCCC-CCccc----ChHHHHHHHHHHHHHHHHHHH----HCC---CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 180 VDQIYHLACPASP-VHYKF----NPVKTIKTNVVGTLNMLGLAK----RVG---ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 180 ~d~Vih~Ag~~~~-~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g---~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+|+||||||.... ....+ +....+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 103 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~------------- 169 (272)
T 4dyv_A 103 VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS------------- 169 (272)
T ss_dssp CCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS-------------
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC-------------
Confidence 9999999998543 22222 245689999999888888764 333 3999999987542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.||++.+.+++.++.+ .++++.+|+||.|.++... .+...... . .......
T Consensus 170 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~--------~~~~~~~~----~--~~~~~~~ 232 (272)
T 4dyv_A 170 ---PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQ--------KMKAGVPQ----A--DLSIKVE 232 (272)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC-----------------------------------
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhh--------hhcccchh----h--hhccccc
Confidence 2223478999999999999999876 4899999999999876421 11000000 0 0001223
Q ss_pred ccccHHHHHHHHHHHHcCCCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~~ 345 (447)
.+++++|+|+++++++.++..
T Consensus 233 ~~~~pedvA~~v~fL~s~~~~ 253 (272)
T 4dyv_A 233 PVMDVAHVASAVVYMASLPLD 253 (272)
T ss_dssp ---CHHHHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCc
Confidence 478999999999999997654
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=180.14 Aligned_cols=215 Identities=10% Similarity=0.069 Sum_probs=149.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCccc---cccccCCCceEEEecccccccc--------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKKDN---LIHHFGNPRFELIRHDVVEPIL-------- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~~-------- 177 (447)
.+++|+++||||+|+||++++++|+++|+ +|++++|+.+...+. +.......++.++.+|+++...
T Consensus 30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 109 (287)
T 3rku_A 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL 109 (287)
T ss_dssp HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999998 999999864322111 1111124578899999987632
Q ss_pred ----cCCCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCC
Q 013226 178 ----LEVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 178 ----~~~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e 243 (447)
.++|+||||||.... .... ++....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~--------- 180 (287)
T 3rku_A 110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD--------- 180 (287)
T ss_dssp CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS---------
T ss_pred HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcC---------
Confidence 369999999997542 2221 235568999999999999987 33444 999999987542
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
+......|+.||++.+.+++.++.+ .|+++++|+||.|.++......... ..........
T Consensus 181 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~-~~~~~~~~~~--------- 243 (287)
T 3rku_A 181 -------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGN-EEQAKNVYKD--------- 243 (287)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTC-HHHHHHHHTT---------
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCc-HHHHHHhhcc---------
Confidence 1222378999999999999999887 4899999999999876310000000 0111111111
Q ss_pred CeeEccccHHHHHHHHHHHHcCCCC---C-cEEecCCCc
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGDHV---G-PFNLGNPGE 355 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~~~---g-~~~i~~~~~ 355 (447)
..++.++|+|+++++++.++.. | ++.+.+++.
T Consensus 244 ---~~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 244 ---TTPLMADDVADLIVYATSRKQNTVIADTLIFPTNQA 279 (287)
T ss_dssp ---SCCEEHHHHHHHHHHHHTSCTTEEEEEEEEEETTEE
T ss_pred ---cCCCCHHHHHHHHHHHhCCCCCeEecceEEeeCCCC
Confidence 1134789999999999987654 3 666665543
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=177.98 Aligned_cols=210 Identities=18% Similarity=0.094 Sum_probs=145.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+|+++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +.++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAK-AVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 578999999999999999999999999999998643211 111111 1236788999998763 1379
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC-C-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG-A-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
|+||||||......... +....+++|+.|+.++++++.+ .+ . +||++||...+..
T Consensus 81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 145 (256)
T 1geg_A 81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVG--------------- 145 (256)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC---------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC---------------
Confidence 99999999764433222 2456899999999888877644 34 4 9999999874321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHH-----------HHHHHHHhCCCeEE
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVS-----------NFVAQALRKEPLTV 316 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 316 (447)
......|+.||++.+.+++.++.+ .|+++++|+||.+.+|... .... ..........
T Consensus 146 -~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---- 216 (256)
T 1geg_A 146 -NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWA----EIDRQVSEAAGKPLGYGTAEFAKRI---- 216 (256)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH----HHHHHHHHHHTCCTTHHHHHHHTTC----
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhh----hhhhhccccccCChHHHHHHHHhcC----
Confidence 112368999999999999999875 4899999999999876310 0000 0011111111
Q ss_pred ecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 317 YGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 317 ~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
....+.+++|+|+++++++.++ ..| .+.+.+|.
T Consensus 217 -----p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 253 (256)
T 1geg_A 217 -----TLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM 253 (256)
T ss_dssp -----TTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred -----CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 1124789999999999999754 245 66666553
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=173.87 Aligned_cols=192 Identities=15% Similarity=0.056 Sum_probs=138.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEVD 181 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 181 (447)
++|+++||||+|+||++++++|+++|++|++++|+..... ....... .++.++.+|+++.. +.++|
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 79 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQ-QQELLLG-NAVIGIVADLAHHEDVDVAFAAAVEWGGLPE 79 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHG-GGEEEEECCTTSHHHHHHHHHHHHHHHCSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHhc-CCceEEECCCCCHHHHHHHHHHHHHhcCCCc
Confidence 5789999999999999999999999999999999643222 1211222 25888999998763 23689
Q ss_pred EEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 182 QIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
+||||||........ ++....+++|+.|+.++++++.. .+.+||++||...+. +..
T Consensus 80 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~ 143 (235)
T 3l6e_A 80 LVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV----------------GKA 143 (235)
T ss_dssp EEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS----------------SCS
T ss_pred EEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC----------------CCC
Confidence 999999985443322 23556899999999999888743 223999999987542 112
Q ss_pred CCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
....|+.||++.+.+++.++.+. |+++.+|+||.+..+... ... . . ....++.++
T Consensus 144 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~--------~~~-----~--~-------~~~~~~~pe 201 (235)
T 3l6e_A 144 NESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWD--------NTD-----H--V-------DPSGFMTPE 201 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC---------------------------------CBCHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchh--------ccC-----C--C-------CCcCCCCHH
Confidence 23789999999999999998764 799999999999776421 000 0 0 112478999
Q ss_pred HHHHHHHHHHcCCCC
Q 013226 331 DLVEGLIRLMEGDHV 345 (447)
Q Consensus 331 D~a~ai~~~l~~~~~ 345 (447)
|+|+++++++.++..
T Consensus 202 dvA~~v~~l~~~~~~ 216 (235)
T 3l6e_A 202 DAAAYMLDALEARSS 216 (235)
T ss_dssp HHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999987654
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=175.11 Aligned_cols=212 Identities=16% Similarity=0.070 Sum_probs=148.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCC-cccccccc--CCCceEEEeccccccc------------ccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGK-KDNLIHHF--GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~-~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+|+++||||+|+||++++++|+++|++|++++|+.... .+.....+ ...++.++.+|+.+.. +.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG 81 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 68899999999999999999999999999999864320 11111111 1346888999998763 136
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----C--CeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----G--ARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+|+||||||........+ +....+++|+.|+.++++++.+. + .+||++||...+..
T Consensus 82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 147 (258)
T 3a28_C 82 FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQG-------------- 147 (258)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSC--------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccC--------------
Confidence 999999999765433222 34568999999999999887542 3 59999999875421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchH-----------HHHHHHHHhCCCeE
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVV-----------SNFVAQALRKEPLT 315 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~-----------~~~~~~~~~~~~~~ 315 (447)
......|+.||++.+.+++.++.++ ++++++|+||.+.++... ... ...........
T Consensus 148 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--- 218 (258)
T 3a28_C 148 --FPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWE----QIDAELSKINGKPIGENFKEYSSSI--- 218 (258)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHH----HHHHHHHHHHCCCTTHHHHHHHTTC---
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhh----hhhhhhccccCCchHHHHHHHHhcC---
Confidence 1223789999999999999998764 899999999999875310 000 00111111111
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
....+.+++|+|+++++++.+. ..| .+++.+|..
T Consensus 219 ------p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 256 (258)
T 3a28_C 219 ------ALGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGGML 256 (258)
T ss_dssp ------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSC
T ss_pred ------CCCCccCHHHHHHHHHHHhCcccCCCCCCEEEECCCEe
Confidence 1123789999999999999764 335 677766543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=174.54 Aligned_cols=220 Identities=11% Similarity=0.049 Sum_probs=151.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---cccccCCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIHHFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+. +.......++.++.+|+++..
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999864322211 111122335889999998763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||......... +....+++|+.|+.++++++.. .+. +||++||...+.
T Consensus 85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------- 151 (265)
T 3lf2_A 85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ------------- 151 (265)
T ss_dssp HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS-------------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC-------------
Confidence 236999999999865433322 2456899999999999998754 333 899999987542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCC------CchHHHHHHHHHhCCCeEEec
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDD------GRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 318 (447)
+......|+.||++.+.+++.++.++ |+++.+|+||.+.+|...... ..-...+..........+
T Consensus 152 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--- 225 (265)
T 3lf2_A 152 ---PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIP--- 225 (265)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTCT---
T ss_pred ---CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCCC---
Confidence 22224789999999999999998765 899999999999875311000 000011111111111111
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
...+..++|+|+++++++... ..| .+++.+|.
T Consensus 226 ----~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 261 (265)
T 3lf2_A 226 ----LGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGL 261 (265)
T ss_dssp ----TCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSSC
T ss_pred ----cCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCCC
Confidence 123678999999999999754 345 66766553
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-20 Score=173.39 Aligned_cols=197 Identities=16% Similarity=0.126 Sum_probs=142.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
.+.++|+|+||||+|+||++++++|+++|++|++++|+...... ..+..|+.+.. ..
T Consensus 18 ~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~-----------~~~~~d~~d~~~v~~~~~~~~~~~g 86 (251)
T 3orf_A 18 GSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD-----------HSFTIKDSGEEEIKSVIEKINSKSI 86 (251)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS-----------EEEECSCSSHHHHHHHHHHHHTTTC
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc-----------cceEEEeCCHHHHHHHHHHHHHHcC
Confidence 34568899999999999999999999999999999997543221 23445554431 23
Q ss_pred CCCEEEEeccCCCCCC-c----ccChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 179 EVDQIYHLACPASPVH-Y----KFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
++|+||||||...... . ..+....+++|+.|+.++++++...- .+||++||...+.
T Consensus 87 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------------- 150 (251)
T 3orf_A 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN---------------- 150 (251)
T ss_dssp CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------
T ss_pred CCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc----------------
Confidence 5899999999754332 1 12355689999999999999987642 3899999988652
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh-----hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG-----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.+|++.+.+++.++.+ .++++.+|+||.|.++. ....... .....
T Consensus 151 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~------------~~~~~~~---------~~~~~ 209 (251)
T 3orf_A 151 RTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT------------NRKYMSD---------ANFDD 209 (251)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH------------HHHHCTT---------SCGGG
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc------------hhhhccc---------ccccc
Confidence 2223478999999999999999877 58999999999987642 1122221 12345
Q ss_pred cccHHHHHHHHHHHHcC-C---CCC-cEEecCCCc
Q 013226 326 FQFVSDLVEGLIRLMEG-D---HVG-PFNLGNPGE 355 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~-~---~~g-~~~i~~~~~ 355 (447)
+++++|+|++++.++.+ . ..| .+++.+++.
T Consensus 210 ~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g~~ 244 (251)
T 3orf_A 210 WTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKSK 244 (251)
T ss_dssp SBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEETT
T ss_pred cCCHHHHHHHHHHHhcCccccCCcceEEEEecCCc
Confidence 78999999999999987 2 234 677765554
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=178.58 Aligned_cols=219 Identities=13% Similarity=0.045 Sum_probs=151.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-C-CC---ceEEEeccccccc----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-G-NP---RFELIRHDVVEPI---------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~-~~---~v~~~~~D~~~~~---------- 176 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+ ....+ . .. ++.++.+|+.+..
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEE-TRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 81 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999986432211 11111 1 12 6888999998763
Q ss_pred --ccCCCEEEEeccCCCCCC----cc----cChHHHHHHHHHHHHHHHHHHHHC----CCeEEEEeCccccCCCCCCCCC
Q 013226 177 --LLEVDQIYHLACPASPVH----YK----FNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQA 242 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~~~----~~----~~~~~~~~~Nv~gt~~ll~aa~~~----g~r~v~~SS~~v~g~~~~~~~~ 242 (447)
+.++|+||||||...... .. +.....+++|+.++.++++++... +.+||++||...+...
T Consensus 82 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 155 (280)
T 1xkq_A 82 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQA------ 155 (280)
T ss_dssp HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSC------
T ss_pred HhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCCC------
Confidence 236999999999764332 11 124568999999999999887542 3599999998765321
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCC--Cch---HHHHHHHHHhCCCe
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDD--GRV---VSNFVAQALRKEPL 314 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~--~~~---~~~~~~~~~~~~~~ 314 (447)
......|+.||++.+.+++.++.+ .|+++++|+||.+++|...... ... ...+....... .
T Consensus 156 ---------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 224 (280)
T 1xkq_A 156 ---------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKEC--I 224 (280)
T ss_dssp ---------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT--C
T ss_pred ---------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcC--C
Confidence 022368999999999999999865 5899999999999987421100 000 01111111111 1
Q ss_pred EEecCCCeeEccccHHHHHHHHHHHHcCC----CCC-cEEecCCCc
Q 013226 315 TVYGDGKQTRSFQFVSDLVEGLIRLMEGD----HVG-PFNLGNPGE 355 (447)
Q Consensus 315 ~~~~~~~~~~~~i~v~D~a~ai~~~l~~~----~~g-~~~i~~~~~ 355 (447)
....+.+++|+|+++++++..+ ..| .+++.++..
T Consensus 225 -------p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 225 -------PIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTS 263 (280)
T ss_dssp -------TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred -------CCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCcc
Confidence 1124789999999999998653 345 677766543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=177.46 Aligned_cols=214 Identities=18% Similarity=0.118 Sum_probs=146.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++++.....+.+.... ...++.++.+|+++.. +
T Consensus 24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3568899999999999999999999999999998665433222222211 2346888999998763 2
Q ss_pred cCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 178 LEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
.++|+||||||........+. ....+++|+.|+.++++++... +.+||++||...+..
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 168 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLL--------------- 168 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHC---------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccC---------------
Confidence 369999999998654443332 4457889999999999988664 238999999875421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
......|+.||++.+.+++.++.++ |+++.+|+||.|..+..... ............. ....+.
T Consensus 169 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~---------p~~r~~ 235 (267)
T 3u5t_A 169 -HPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEG---KSDEVRDRFAKLA---------PLERLG 235 (267)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC--------------CHHHHHTSS---------TTCSCB
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcccccc---CCHHHHHHHHhcC---------CCCCCc
Confidence 1123689999999999999998875 89999999999987642110 0011111122211 123467
Q ss_pred cHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 328 FVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.++|+|+++++++.... .| .+++.+|
T Consensus 236 ~pedvA~~v~~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 236 TPQDIAGAVAFLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp CHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred CHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 89999999999997653 35 5666543
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=176.69 Aligned_cols=211 Identities=16% Similarity=0.111 Sum_probs=147.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccc--cccc---------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDV--VEPI--------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~--~~~~--------- 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+ ....+ ...++.++.+|+ .+..
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQ-VASHINEETGRQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999986432211 11111 123567788888 5542
Q ss_pred ---ccCCCEEEEeccCCCC-CCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCC
Q 013226 177 ---LLEVDQIYHLACPASP-VHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 177 ---~~~~d~Vih~Ag~~~~-~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e 243 (447)
+.++|+||||||.... ..... +....+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~--------- 157 (252)
T 3f1l_A 87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ--------- 157 (252)
T ss_dssp HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS---------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc---------
Confidence 2369999999997532 12222 24568999999999999987 44444 999999987542
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhC--CcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG--IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
+......|+.||++.+.+++.++.+++ +++.+|+||.+..+. ........
T Consensus 158 -------~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~------------~~~~~~~~--------- 209 (252)
T 3f1l_A 158 -------GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM------------RASAFPTE--------- 209 (252)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH------------HHHHCTTC---------
T ss_pred -------CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch------------hhhhCCcc---------
Confidence 122237899999999999999988764 899999999887531 11111111
Q ss_pred eeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCccCHH
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFTML 359 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s~~ 359 (447)
....+..++|+|+++++++... ..| .+++.+|...++.
T Consensus 210 ~~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 210 DPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp CGGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC------
T ss_pred chhccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCcCCCCC
Confidence 1124678899999999999764 234 7777777665554
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=178.43 Aligned_cols=214 Identities=15% Similarity=0.084 Sum_probs=148.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
++++|+|+||||+|+||++++++|+++|++|++++|+..... .+.... ...++.++.+|+.+.. +
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 109 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADE-KAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDF 109 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHH-HHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999998654321 111111 1236788999997753 1
Q ss_pred cCCCEEEEeccCCCC-CCcc-----cChHHHHHHHHHH----HHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 178 LEVDQIYHLACPASP-VHYK-----FNPVKTIKTNVVG----TLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~-~~~~-----~~~~~~~~~Nv~g----t~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
..+|+||||||.... .... .+....+++|+.| ++++++.+++.+. +||++||...+..
T Consensus 110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----------- 178 (279)
T 3ctm_A 110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIV----------- 178 (279)
T ss_dssp SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC-----------
T ss_pred CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccC-----------
Confidence 259999999997644 2222 1245688999999 4566666766665 9999999875421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
.+..+...|+.+|++.|.+++.++.++ + ++++++||.+.++...... ...........+ .
T Consensus 179 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~----~~~~~~~~~~~p---------~ 241 (279)
T 3ctm_A 179 ---NIPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFAS----KDMKAKWWQLTP---------L 241 (279)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCC----HHHHHHHHHHST---------T
T ss_pred ---CCCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccC----hHHHHHHHHhCC---------c
Confidence 012234789999999999999998764 6 9999999999887532111 122222222111 1
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
..+++++|+|+++++++.++ ..| .+++.++.
T Consensus 242 ~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG~ 276 (279)
T 3ctm_A 242 GREGLTQELVGGYLYLASNASTFTTGSDVVIDGGY 276 (279)
T ss_dssp CSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred cCCcCHHHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 23788999999999999753 234 77777654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.9e-20 Score=170.35 Aligned_cols=205 Identities=13% Similarity=0.084 Sum_probs=144.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.+... .+...+ ...++.++.+|+.++. +
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLR-ALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 367899999999999999999999999999999998643211 111111 1246888999998763 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
.++|+||||||........+ +....+++|+.|+.++++++.. .+.+||++||...+..
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 148 (247)
T 2jah_A 83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRVN-------------- 148 (247)
T ss_dssp SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTCC--------------
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcCC--------------
Confidence 36999999999764433222 2456899999999999988743 2359999999875421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.+|++.+.+++.++.+ .|+++++|+||.+.++......... ........+ +. ..+
T Consensus 149 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~----~~~~~~~~~----~~----~~~ 214 (247)
T 2jah_A 149 --VRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTA----TKEMYEQRI----SQ----IRK 214 (247)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHH----HHHHHHHHT----TT----SCC
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchh----hHHHHHhcc----cc----cCC
Confidence 122368999999999999998865 4899999999999887432111111 111111100 10 115
Q ss_pred ccHHHHHHHHHHHHcCCCC
Q 013226 327 QFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~~ 345 (447)
++.+|+|+++++++.++..
T Consensus 215 ~~pedvA~~v~~l~s~~~~ 233 (247)
T 2jah_A 215 LQAQDIAEAVRYAVTAPHH 233 (247)
T ss_dssp BCHHHHHHHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHhCCCcc
Confidence 8999999999999987543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=178.83 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=149.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccccccCCCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHHFGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~------------~ 177 (447)
+++|+++||||+|+||++++++|+++|++|++++|+.....+ .+.......++.++.+|+.++. +
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 84 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999986432211 1111111236788999998763 2
Q ss_pred cCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHH----HHHCC---C-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 178 LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL----AKRVG---A-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~a----a~~~g---~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
.++|+||||||... ..+..+.+++|+.++.++.++ +++.+ . +||++||...+..
T Consensus 85 g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------------- 146 (267)
T 2gdz_A 85 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP-------------- 146 (267)
T ss_dssp SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC--------------
T ss_pred CCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCC--------------
Confidence 35899999999653 345678899999976655544 44432 3 8999999886532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHH--h---hhCCcEEEEeeccccCCCCccCCCc-hHHH---HHHHHHhCCCeEEecCC
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYH--R---GLGIEARIARIFNTYGPRMCIDDGR-VVSN---FVAQALRKEPLTVYGDG 320 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~--~---~~~i~~~ivRp~~i~Gp~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~ 320 (447)
......|+.||++.+.+++.++ . ..|+++++|+||.+.++........ .... +...... +
T Consensus 147 --~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~--~------- 215 (267)
T 2gdz_A 147 --VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKD--M------- 215 (267)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHH--H-------
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHHH--H-------
Confidence 1123679999999999998752 2 3589999999999987631100000 0000 0000000 0
Q ss_pred CeeEccccHHHHHHHHHHHHcCCC-CC-cEEecCCCccCHHHH
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGDH-VG-PFNLGNPGEFTMLEL 361 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~~-~g-~~~i~~~~~~s~~el 361 (447)
.....+++++|+|+++++++.++. .| ++++.+++.+++.|+
T Consensus 216 ~~~~~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~~~~~~ 258 (267)
T 2gdz_A 216 IKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQDY 258 (267)
T ss_dssp HHHHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECCC
T ss_pred hccccCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcccccCc
Confidence 011247899999999999998653 34 888888877766553
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=174.34 Aligned_cols=202 Identities=11% Similarity=0.072 Sum_probs=139.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++|+++||||+|+||++++++|+++|++|++++|+..... .+...+ ...++.++.+|+++.. +.
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIE-AIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 36789999999999999999999999999999998643221 111111 1346788899998763 23
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......... +....+++|+.|+.++++++.. .+. +||++||...+..
T Consensus 81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~-------------- 146 (264)
T 3tfo_A 81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSV-------------- 146 (264)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC--------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHccc--------------
Confidence 6999999999865443322 2456899999999988887643 344 9999999875521
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh-CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL-GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~-~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
......|+.||++.+.+++.++.+. ++++++|+||.|.++... .+. .......... ....++.
T Consensus 147 --~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~--------~~~----~~~~~~~~~~--~~~~~~~ 210 (264)
T 3tfo_A 147 --VPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAG--------TIT----HEETMAAMDT--YRAIALQ 210 (264)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC-------------------------------------CCC
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccc--------ccc----chhHHHHHHh--hhccCCC
Confidence 2223789999999999999998775 899999999998876421 000 0000000000 1112578
Q ss_pred HHHHHHHHHHHHcCCCC
Q 013226 329 VSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 329 v~D~a~ai~~~l~~~~~ 345 (447)
.+|+|++++++++++..
T Consensus 211 pedvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 211 PADIARAVRQVIEAPQS 227 (264)
T ss_dssp HHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 99999999999998764
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-20 Score=170.68 Aligned_cols=194 Identities=19% Similarity=0.161 Sum_probs=141.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------c--cC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------L--LE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~--~~ 179 (447)
++|+++||||+|+||++++++|+++|++|++++|+..... ....++.+|+.+.. + .+
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~ 72 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA---------DSNILVDGNKNWTEQEQSILEQTASSLQGSQ 72 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS---------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc---------cccEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5789999999999999999999999999999999654321 13466778886652 1 37
Q ss_pred CCEEEEeccCCCCCCc-c----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 180 VDQIYHLACPASPVHY-K----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~-~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
+|+||||||......+ . .+....+++|+.|+.++++++.+. +.+||++||...+. +
T Consensus 73 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------------~ 136 (236)
T 1ooe_A 73 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG----------------P 136 (236)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------C
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc----------------C
Confidence 9999999997653332 2 224568999999999999998764 23899999987652 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhh-----CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGL-----GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~-----~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.+|++.+.+++.++.++ |+++++++||.+.++. ........ ....+
T Consensus 137 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~------------~~~~~~~~---------~~~~~ 195 (236)
T 1ooe_A 137 TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM------------NRKWMPNA---------DHSSW 195 (236)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH------------HHHHSTTC---------CGGGC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc------------hhhcCCCc---------ccccc
Confidence 2233789999999999999998765 4999999999998752 11111111 12246
Q ss_pred ccHHHHHHHHHHHHcCC----CCC-cEEecCC
Q 013226 327 QFVSDLVEGLIRLMEGD----HVG-PFNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~----~~g-~~~i~~~ 353 (447)
++.+|+|++++.++..+ ..| .+.+.++
T Consensus 196 ~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg 227 (236)
T 1ooe_A 196 TPLSFISEHLLKWTTETSSRPSSGALLKITTE 227 (236)
T ss_dssp BCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCcccccccEEEEecC
Confidence 78899999999766322 234 5555543
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=178.61 Aligned_cols=216 Identities=12% Similarity=-0.012 Sum_probs=150.2
Q ss_pred cCCCCeEEEEcCCCh--hHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGF--VGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~--IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+++||||+|+ ||++++++|+++|++|++++|+... .+.+.... ...++.++.+|+++..
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDAL-KKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHH-HHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHH-HHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHh
Confidence 478999999999977 9999999999999999999986321 11111110 1125788999998763
Q ss_pred ccCCCEEEEeccCCCC----CCcc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCc
Q 013226 177 LLEVDQIYHLACPASP----VHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~----~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+.++|+||||||.... ..+. .+....+++|+.++.++++++... +.+||++||...+.
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----------- 175 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK----------- 175 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS-----------
T ss_pred cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc-----------
Confidence 2369999999997641 1111 234568999999999999998763 23999999987653
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.||++.+.+++.++.++ |+++.+|+||.|.++...... .............++
T Consensus 176 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p~-------- 240 (293)
T 3grk_A 176 -----VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIG--DFRYILKWNEYNAPL-------- 240 (293)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------C--CHHHHHHHHHHHSTT--------
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhccc--chHHHHHHHHhcCCC--------
Confidence 12224789999999999999998764 899999999999987532111 112222222222221
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
..+..++|+|+++++++... ..| .+++.+|..
T Consensus 241 -~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (293)
T 3grk_A 241 -RRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSGYH 276 (293)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -CCCCCHHHHHHHHHHHcCccccCCcceEEEECCCcc
Confidence 23678899999999999754 335 777776644
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=169.80 Aligned_cols=216 Identities=11% Similarity=0.006 Sum_probs=149.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
.+++||+++||||+++||+++++.|+++|++|++++|+.+...+ ..+.+ ...++.++.+|++++.
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~-~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQ-IVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHH-HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999986443221 11111 2347888999998763
Q ss_pred ccCCCEEEEeccCCCC-CCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 LLEVDQIYHLACPASP-VHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~-~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|++|||||+... ..+.+ +.+..+++|+.|+..+.+++. +.+. +||++||...+.
T Consensus 82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~------------ 149 (254)
T 4fn4_A 82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR------------ 149 (254)
T ss_dssp HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC------------
T ss_pred cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcC------------
Confidence 3469999999997543 22322 355689999999988887753 3454 999999987431
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhC-CCeEEecCCCe
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRK-EPLTVYGDGKQ 322 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 322 (447)
+......|+.||+....+.+.++.++ ||++..|.||.|-.|........- .......... .++
T Consensus 150 ----~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~-~~~~~~~~~~~~~~-------- 216 (254)
T 4fn4_A 150 ----GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPS-ELGMRTLTKLMSLS-------- 216 (254)
T ss_dssp ----SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCC-HHHHHHHHHHHTTC--------
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCc-HHHHHHHHhcCCCC--------
Confidence 12223789999999999999998764 899999999999876422111100 1111111111 111
Q ss_pred eEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.-+...+|+|.++++++.+.. .| .+.+.+|
T Consensus 217 -~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG 250 (254)
T 4fn4_A 217 -SRLAEPEDIANVIVFLASDEASFVNGDAVVVDGG 250 (254)
T ss_dssp -CCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -CCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCC
Confidence 114568999999999997543 35 5555544
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-20 Score=174.96 Aligned_cols=222 Identities=17% Similarity=0.164 Sum_probs=151.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+.... +.+.... ..+.++.+|+.+.. +.+
T Consensus 6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 82 (270)
T 1yde_A 6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGG-RALEQEL--PGAVFILCDVTQEDDVKTLVSETIRRFGR 82 (270)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHC--TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999999864321 1111111 24788899997763 236
Q ss_pred CCEEEEeccCCCC-CCccc----ChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccc-cCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASP-VHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEV-YGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~-~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v-~g~~~~~~~~e~~~~~~ 249 (447)
+|+||||||.... ....+ +....+++|+.|+.++++++.+ .+.+||++||... ++.+
T Consensus 83 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~------------- 149 (270)
T 1yde_A 83 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQA------------- 149 (270)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCT-------------
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCCC-------------
Confidence 9999999997542 22221 2456899999999999988753 3459999999863 3321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCcc--C-CCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCI--D-DGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
....|+.+|+..+.+++.++.+ .|+++++|+||.+++|.... . .... ...+.......++
T Consensus 150 ----~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~-~~~~~~~~~~~p~--------- 215 (270)
T 1yde_A 150 ----QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDP-RASIREGMLAQPL--------- 215 (270)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSH-HHHHHHHHHTSTT---------
T ss_pred ----CCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccch-HHHHHHHhhcCCC---------
Confidence 1267999999999999999865 58999999999999863210 0 0000 0011111111111
Q ss_pred EccccHHHHHHHHHHHHcCC--CCC-cEEecCCCccCHHHHHH
Q 013226 324 RSFQFVSDLVEGLIRLMEGD--HVG-PFNLGNPGEFTMLELAE 363 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~--~~g-~~~i~~~~~~s~~el~~ 363 (447)
..+...+|+|+++++++.+. ..| .+++.+|..+.+.+...
T Consensus 216 ~r~~~p~dva~~v~~L~s~~~~itG~~i~vdGG~~~~~~~~~~ 258 (270)
T 1yde_A 216 GRMGQPAEVGAAAVFLASEANFCTGIELLVTGGAELGYGCKAS 258 (270)
T ss_dssp SSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTTTSCC-----
T ss_pred CCCcCHHHHHHHHHHHcccCCCcCCCEEEECCCeecccCcCcc
Confidence 13578999999999998752 235 78888776665544433
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=175.97 Aligned_cols=221 Identities=13% Similarity=0.093 Sum_probs=151.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc--------ccccc---c--cCCCceEEEeccccccc--
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK--------DNLIH---H--FGNPRFELIRHDVVEPI-- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~--------~~~~~---~--~~~~~v~~~~~D~~~~~-- 176 (447)
.+++|++|||||+|+||+++++.|+++|++|++++|+..... +.+.. . ....++.++.+|+.+..
T Consensus 43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 122 (317)
T 3oec_A 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASL 122 (317)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 568899999999999999999999999999999988632211 11110 0 12346888999998763
Q ss_pred ----------ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CC--CeEEEEeCccccCCC
Q 013226 177 ----------LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG--ARFLLTSTSEVYGDP 236 (447)
Q Consensus 177 ----------~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g--~r~v~~SS~~v~g~~ 236 (447)
+.++|+||||||......... +....+++|+.|+.++++++.. .+ .+||++||...+..
T Consensus 123 ~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~- 201 (317)
T 3oec_A 123 QAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRG- 201 (317)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCC-
Confidence 236999999999865443222 3456889999999999888743 33 38999999875421
Q ss_pred CCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCC-
Q 013226 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKE- 312 (447)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~- 312 (447)
......|+.||++.+.+++.++.++ |+++++|+||.|+++.... ..+........
T Consensus 202 ---------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~------~~~~~~~~~~~~ 260 (317)
T 3oec_A 202 ---------------APGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALN------EKLLKMFLPHLE 260 (317)
T ss_dssp ---------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHC------HHHHHHHCTTCS
T ss_pred ---------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccc------hhhhhhhhhhcc
Confidence 1223789999999999999998764 8999999999999863210 00111110000
Q ss_pred -Ce-----EEe-cCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 313 -PL-----TVY-GDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 313 -~~-----~~~-~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
+. ..+ ........|++++|+|+++++++... ..| ++++.+|.
T Consensus 261 ~~~~~~~~~~~~~~~~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG~ 313 (317)
T 3oec_A 261 NPTREDAAELFSQLTLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGGQ 313 (317)
T ss_dssp SCCHHHHHHHHTTTCSSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred ccchhHHHHHHhhhccCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcch
Confidence 00 000 00001145789999999999998754 234 77777654
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-20 Score=176.01 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=148.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccc----cc-------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVE----PI------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~----~~------- 176 (447)
.++++|+++||||+|+||++++++|+++|++|++++|+.....+.+...+ ...++.++.+|+++ ..
T Consensus 19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~ 98 (288)
T 2x9g_A 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIIN 98 (288)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHH
Confidence 45688999999999999999999999999999999996411111111111 12468889999988 42
Q ss_pred -----ccCCCEEEEeccCCCCCCc-----cc---------ChHHHHHHHHHHHHHHHHHHHHC----C------C-eEEE
Q 013226 177 -----LLEVDQIYHLACPASPVHY-----KF---------NPVKTIKTNVVGTLNMLGLAKRV----G------A-RFLL 226 (447)
Q Consensus 177 -----~~~~d~Vih~Ag~~~~~~~-----~~---------~~~~~~~~Nv~gt~~ll~aa~~~----g------~-r~v~ 226 (447)
+.++|+||||||......+ .. .....+++|+.|+.++++++... + . +||+
T Consensus 99 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~ 178 (288)
T 2x9g_A 99 SCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVN 178 (288)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEE
T ss_pred HHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEE
Confidence 2369999999997654332 11 23458899999999998887542 2 3 8999
Q ss_pred EeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHH
Q 013226 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSN 303 (447)
Q Consensus 227 ~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~ 303 (447)
+||...+. +......|+.||++.+.+++.++.++ |+++++|+||.+++|. . .. ..
T Consensus 179 isS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~~----~~ 236 (288)
T 2x9g_A 179 LCDAMVDQ----------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-MG----EE 236 (288)
T ss_dssp ECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-SC----HH
T ss_pred EecccccC----------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-cC----hH
Confidence 99987653 12234789999999999999998764 8999999999999885 2 11 11
Q ss_pred HHHHHHhCCCeEEecCCCeeEcc-ccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 304 FVAQALRKEPLTVYGDGKQTRSF-QFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~-i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
.........++ ..+ ...+|+|+++++++... ..| .+++.++
T Consensus 237 ~~~~~~~~~p~---------~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG 282 (288)
T 2x9g_A 237 EKDKWRRKVPL---------GRREASAEQIADAVIFLVSGSAQYITGSIIKVDGG 282 (288)
T ss_dssp HHHHHHHTCTT---------TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhhCCC---------CCCCCCHHHHHHHHHHHhCccccCccCCEEEECcc
Confidence 22222222211 124 68899999999999753 345 5556554
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=173.41 Aligned_cols=203 Identities=14% Similarity=0.104 Sum_probs=147.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEecCCCCCccccccccCCCceEEEecccccccc----------cCCCE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMD-RGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL----------LEVDQ 182 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~-~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~----------~~~d~ 182 (447)
++|+++||||+|+||++++++|++ .|+.|++++|..... ...+.++.+|++++.. .++|+
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~ 73 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS---------AENLKFIKADLTKQQDITNVLDIIKNVSFDG 73 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC---------CTTEEEEECCTTCHHHHHHHHHHTTTCCEEE
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc---------cccceEEecCcCCHHHHHHHHHHHHhCCCCE
Confidence 678999999999999999999999 788999998854322 1246788899877531 26899
Q ss_pred EEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC
Q 013226 183 IYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR 255 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~ 255 (447)
||||||......... +....+++|+.|+.++++++...- .+||++||...+.. ....
T Consensus 74 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~----------------~~~~ 137 (244)
T 4e4y_A 74 IFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIA----------------KPNS 137 (244)
T ss_dssp EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCC----------------CTTB
T ss_pred EEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccC----------------CCCC
Confidence 999999865433322 245689999999999999987652 38999999876522 2223
Q ss_pred ChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHH-----------HHHHHHhCCCeEEecCCC
Q 013226 256 SCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSN-----------FVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 321 (447)
..|+.||++.+.+++.++.+ .|+++++|+||.+.+|... ..... .........
T Consensus 138 ~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--------- 204 (244)
T 4e4y_A 138 FAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYR----NLIQKYANNVGISFDEAQKQEEKEF--------- 204 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHH----HHHHHHHHHHTCCHHHHHHHHHTTS---------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhH----HHHHhhhhhcCCCHHHHHHHHhhcC---------
Confidence 68999999999999999874 5899999999999876321 01111 111111111
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
....+.+++|+|+++++++.+.. .| .+++.+|.
T Consensus 205 p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 241 (244)
T 4e4y_A 205 PLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGGY 241 (244)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCCcCHHHHHHHHHHHhcCccccccCCeEeECCCc
Confidence 12347889999999999997542 34 67776553
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-20 Score=174.61 Aligned_cols=213 Identities=15% Similarity=0.095 Sum_probs=146.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
+|+++||||+|+||++++++|+++| +.|++++|+.... +.+.... ..++.++.+|+++.. +.++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~-~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPL-KKLKEKY-GDRFFYVVGDITEDSVLKQLVNAAVKGHGKI 79 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHH-HHHHHHH-GGGEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHH-HHHHHHh-CCceEEEECCCCCHHHHHHHHHHHHHhcCCc
Confidence 6899999999999999999999985 6888888864322 1121111 236888999998763 2369
Q ss_pred CEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHH----HHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 181 DQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 181 d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
|+||||||.... .... ++....+++|+.|+.++++++ ++.+.+||++||...+. +
T Consensus 80 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~----------------~ 143 (254)
T 3kzv_A 80 DSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNM----------------Y 143 (254)
T ss_dssp CEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCC----------------S
T ss_pred cEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhcc----------------C
Confidence 999999997543 2222 224568999999999999887 44456999999987542 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhh-CCcEEEEeeccccCCCCccCCCc-----hHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGL-GIEARIARIFNTYGPRMCIDDGR-----VVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~-~i~~~ivRp~~i~Gp~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.||++.+.+++.++.+. ++++.+|+||.+.++........ .............+. ..
T Consensus 144 ~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~r 214 (254)
T 3kzv_A 144 FSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKEN---------NQ 214 (254)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHTT---------C-
T ss_pred CCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHhc---------CC
Confidence 2234789999999999999998775 89999999999998754321110 012222222221111 23
Q ss_pred cccHHHHHHHHHHHHcCCC----CC-cEEecCCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH----VG-PFNLGNPG 354 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~----~g-~~~i~~~~ 354 (447)
+.+++|+|+++++++.... .| .+++.+++
T Consensus 215 ~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~ 248 (254)
T 3kzv_A 215 LLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPA 248 (254)
T ss_dssp ---CHHHHHHHHHHHHHCCCGGGTTCEEETTCGG
T ss_pred cCCcccHHHHHHHHHhhcccCCCCccEEEecCcc
Confidence 6788999999999997652 35 55555443
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-20 Score=173.71 Aligned_cols=197 Identities=11% Similarity=-0.009 Sum_probs=139.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------cc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~ 178 (447)
.+++|+||||||+|+||++++++|+++|++|++++|+.+...+..... ....++.++.+|+.+.. +.
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG 105 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999999999999998643322111110 12347889999997763 23
Q ss_pred CCCEEEEeccCCC-CCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPAS-PVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~-~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.+|+||||||... ..... .+....+++|+.|+.++++++.. .+. +||++||...+.
T Consensus 106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------- 171 (262)
T 3rkr_A 106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN-------------- 171 (262)
T ss_dssp CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSC--------------
T ss_pred CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcC--------------
Confidence 5999999999732 22221 22456899999999999888643 444 999999987542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.+|++.+.+++.++.+ .|+++.+++||.+..+... .+ .. ......
T Consensus 172 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~--------~~----~~---------~~~~~~ 228 (262)
T 3rkr_A 172 --PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGV--------GL----SA---------KKSALG 228 (262)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------------------------
T ss_pred --CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCccc--------cc----cc---------cccccc
Confidence 2223478999999999999999866 5899999999998765310 00 00 011234
Q ss_pred cccHHHHHHHHHHHHcCCCC
Q 013226 326 FQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~~ 345 (447)
++..+|+|+++++++.....
T Consensus 229 ~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 229 AIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp CCCHHHHHHHHHHHHTCCTT
T ss_pred CCCHHHHHHHHHHHhcCccc
Confidence 67999999999999987654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=174.65 Aligned_cols=197 Identities=14% Similarity=0.074 Sum_probs=141.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccc---cccc-CCCceEEEeccccccc-----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL---IHHF-GNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~---~~~~-~~~~v~~~~~D~~~~~----------- 176 (447)
++++|+++||||+|+||++++++|+++|++|++++|+.....+.. .... ...++.++.+|+++..
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999643222111 1111 1256888999998753
Q ss_pred -ccCCCEEEEeccCCCCCCccc---ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 -LLEVDQIYHLACPASPVHYKF---NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~~---~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||.......+. +....+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------- 150 (250)
T 3nyw_A 84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY------------- 150 (250)
T ss_dssp HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcC-------------
Confidence 236999999999865443322 245689999999999998873 3444 999999987432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+..+...|+.||++.+.+++.++.++ |+++.+|+||.+..+. ..... ... ...
T Consensus 151 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~------------~~~~~--~~~-------~~~ 206 (250)
T 3nyw_A 151 ---GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM------------AKKAG--TPF-------KDE 206 (250)
T ss_dssp -----CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH------------HHHTT--CCS-------CGG
T ss_pred ---CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCch------------hhhcC--CCc-------ccc
Confidence 11124789999999999999998764 8999999999987642 11111 111 123
Q ss_pred ccccHHHHHHHHHHHHcCCCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~~ 345 (447)
.+++++|+|+++++++..+..
T Consensus 207 ~~~~p~dva~~v~~l~s~~~~ 227 (250)
T 3nyw_A 207 EMIQPDDLLNTIRCLLNLSEN 227 (250)
T ss_dssp GSBCHHHHHHHHHHHHTSCTT
T ss_pred cCCCHHHHHHHHHHHHcCCCc
Confidence 478999999999999987653
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-20 Score=176.35 Aligned_cols=204 Identities=17% Similarity=0.074 Sum_probs=142.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc----cCCCceEEEecccccccc----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH----FGNPRFELIRHDVVEPIL---------- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~----~~~~~v~~~~~D~~~~~~---------- 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... .+... .....+.++.+|+.+...
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 107 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE-ELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 107 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHH-HHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999998643211 11111 112357888999987632
Q ss_pred --cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHH----HHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCC
Q 013226 178 --LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVG----TLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 178 --~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~g----t~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
.++|+||||||......+.. +....+++|+.+ ++.++..+++.+ .+||++||...+..
T Consensus 108 ~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~--------- 178 (279)
T 1xg5_A 108 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV--------- 178 (279)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC---------
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc---------
Confidence 36999999999765433222 245689999999 666677777766 49999999886532
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh-----hCCcEEEEeeccccCCCCcc-CCCchHHHHHHHHHhCCCeEEec
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG-----LGIEARIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~i~~~ivRp~~i~Gp~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
.+..+...|+.+|++.+.+++.++.+ .++++++|+||.+.++.... .... ... ....
T Consensus 179 -----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~-~~~----~~~~------- 241 (279)
T 1xg5_A 179 -----LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKD-PEK----AAAT------- 241 (279)
T ss_dssp -----CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTC-HHH----HHHH-------
T ss_pred -----CCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccC-hhH----Hhhh-------
Confidence 12223468999999999999988764 47999999999998763100 0000 000 0000
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~~ 344 (447)
.....+++++|+|+++++++..+.
T Consensus 242 --~~~~~~~~~~dvA~~i~~l~~~~~ 265 (279)
T 1xg5_A 242 --YEQMKCLKPEDVAEAVIYVLSTPA 265 (279)
T ss_dssp --HC---CBCHHHHHHHHHHHHHSCT
T ss_pred --cccccCCCHHHHHHHHHHHhcCCc
Confidence 011247899999999999998754
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=177.96 Aligned_cols=196 Identities=10% Similarity=-0.008 Sum_probs=144.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
..+++|+|+||||+|+||++++++|+++|++|++++|+..... .+...+ ...++.++.+|+.+..
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 105 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLE-ETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE 105 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHH-HHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999998643221 111111 1246888999997753
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||......... +....+++|+.|+.++++++. +.+. +||++||...+..
T Consensus 106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------ 173 (272)
T 1yb1_A 106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS------------ 173 (272)
T ss_dssp TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCC------------
T ss_pred CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCC------------
Confidence 236999999999765433222 245689999999888777653 4555 9999999876532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh------CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL------GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~------~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
..+...|+.+|++.+.+++.++.+. ++++++|+||.+.++... .. . .
T Consensus 174 ----~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~---~~--------------~------~ 226 (272)
T 1yb1_A 174 ----VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIK---NP--------------S------T 226 (272)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTT---CT--------------H------H
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc---cc--------------c------c
Confidence 1123679999999999999988764 899999999999887421 00 0 0
Q ss_pred eeEccccHHHHHHHHHHHHcCCCCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDHVG 346 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~~g 346 (447)
....+++++|+|++++.++.++...
T Consensus 227 ~~~~~~~~~dva~~i~~~~~~~~~~ 251 (272)
T 1yb1_A 227 SLGPTLEPEEVVNRLMHGILTEQKM 251 (272)
T ss_dssp HHCCCCCHHHHHHHHHHHHHTTCSE
T ss_pred cccCCCCHHHHHHHHHHHHHcCCCE
Confidence 1124789999999999999876653
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-20 Score=169.17 Aligned_cols=195 Identities=13% Similarity=0.015 Sum_probs=140.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc--cCCCceEEEeccccccc------------ccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH--FGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++|+++||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+++.. +.+
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD 80 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 3688999999999999999999999999999998643222111110 11347888999997763 136
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
+|+||||||......... +....+++|+.|+.++++++.. .+.++|++||...+..
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~---------------- 144 (235)
T 3l77_A 81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARL---------------- 144 (235)
T ss_dssp CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSC----------------
T ss_pred CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhccc----------------
Confidence 999999999865443322 3456899999999999998754 2457888887664321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh-hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG-LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~-~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
......|+.+|++.+.+++.+..+ .++++++++||.+..+...... .......++.++
T Consensus 145 ~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~---------------------~~~~~~~~~~p~ 203 (235)
T 3l77_A 145 IPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKP---------------------GKPKEKGYLKPD 203 (235)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCS---------------------CCCGGGTCBCHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccC---------------------CcccccCCCCHH
Confidence 112368999999999999998544 4899999999998875421100 001112578999
Q ss_pred HHHHHHHHHHcCCCC
Q 013226 331 DLVEGLIRLMEGDHV 345 (447)
Q Consensus 331 D~a~ai~~~l~~~~~ 345 (447)
|+|++++++++++..
T Consensus 204 dva~~v~~l~~~~~~ 218 (235)
T 3l77_A 204 EIAEAVRCLLKLPKD 218 (235)
T ss_dssp HHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999998653
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=9.9e-20 Score=177.53 Aligned_cols=211 Identities=14% Similarity=0.030 Sum_probs=149.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEe-cCCCCCcccccccc---CCCceEEEeccccccc------------
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVD-NYFTGKKDNLIHHF---GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~-r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~------------ 176 (447)
+++|++|||||+|+||+++++.|+++|++|++++ |+.... +.+...+ ...++.++.+|+.+..
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 122 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEA-NALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP 122 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH-HHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccc
Confidence 5789999999999999999999999999999999 753221 1111111 1246888899988765
Q ss_pred -----c------------cCCCEEEEeccCCCCCCcc------------------cChHHHHHHHHHHHHHHHHHHH---
Q 013226 177 -----L------------LEVDQIYHLACPASPVHYK------------------FNPVKTIKTNVVGTLNMLGLAK--- 218 (447)
Q Consensus 177 -----~------------~~~d~Vih~Ag~~~~~~~~------------------~~~~~~~~~Nv~gt~~ll~aa~--- 218 (447)
. .++|+||||||......+. ......+++|+.|+.++++++.
T Consensus 123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m 202 (328)
T 2qhx_A 123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV 202 (328)
T ss_dssp BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2699999999976433321 1234578999999999988765
Q ss_pred -HCC------C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeecc
Q 013226 219 -RVG------A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFN 287 (447)
Q Consensus 219 -~~g------~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~ 287 (447)
+.+ . +||++||...+. +......|+.+|++.+.+++.++.++ |+++++|+||.
T Consensus 203 ~~~~~~~~~~~g~IV~isS~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~ 266 (328)
T 2qhx_A 203 AGTPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL 266 (328)
T ss_dssp HHSCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred HhcCCcCCCCCcEEEEECchhhcc----------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCc
Confidence 334 4 999999987542 12223789999999999999998764 89999999999
Q ss_pred ccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 288 TYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 288 i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
|.++. . . + ...........++ + ..+..++|+|+++++++... ..| .+++.++.
T Consensus 267 v~T~~-~-~---~-~~~~~~~~~~~p~---~-----~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~ 323 (328)
T 2qhx_A 267 SVLVD-D-M---P-PAVWEGHRSKVPL---Y-----QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGY 323 (328)
T ss_dssp BSCCC-C-S---C-HHHHHHHHTTCTT---T-----TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ccCCc-c-c---c-HHHHHHHHhhCCC---C-----CCCCCHHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 99875 1 1 1 2233333322211 0 03678999999999999643 235 66666553
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.2e-20 Score=169.64 Aligned_cols=188 Identities=13% Similarity=-0.025 Sum_probs=131.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEVD 181 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d 181 (447)
++|+|+||||+|+||++++++|+++|++|++++|+.... +.+.... .++.++.+|+.+.. +.++|
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~-~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRL-QALAAEL--EGALPLPGDVREEGDWARAVAAMEEAFGELS 80 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHS--TTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHh--hhceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 567899999999999999999999999999999864321 1111111 25788889987752 23699
Q ss_pred EEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHH----HHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 182 QIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGL----AKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~a----a~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+||||||......... +....+++|+.|+.+++++ +++.+. +||++||...+.. .
T Consensus 81 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----------------~ 144 (234)
T 2ehd_A 81 ALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNP----------------F 144 (234)
T ss_dssp EEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSC----------------C
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCC----------------C
Confidence 9999999754333222 2456899999999766655 455565 9999999876532 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
.+...|+.+|++.+.+++.++.+ .|++++++|||.+.++... .. . .. ..++++
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--------~~-----~-~~----------~~~~~~ 200 (234)
T 2ehd_A 145 KGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAG--------NT-----P-GQ----------AWKLKP 200 (234)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC----------------------------------------CCH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCccc--------cc-----c-cc----------cCCCCH
Confidence 23378999999999999988765 4899999999998765310 00 0 00 015799
Q ss_pred HHHHHHHHHHHcCCC
Q 013226 330 SDLVEGLIRLMEGDH 344 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~ 344 (447)
+|+|+++++++.++.
T Consensus 201 ~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 201 EDVAQAVLFALEMPG 215 (234)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999998753
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=169.10 Aligned_cols=218 Identities=17% Similarity=0.149 Sum_probs=151.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------c
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++||+++||||+++||+++++.|+++|++|++++|+.+... ..... ....++.++.+|++++. +
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~ 81 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGA-FLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF 81 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHH-HHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHH-HHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999754321 11110 12346888999998763 3
Q ss_pred cCCCEEEEeccCCCCCCcccC---hHHHHHHHHHHHHHHHHHHH----HCCCeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 178 LEVDQIYHLACPASPVHYKFN---PVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~~---~~~~~~~Nv~gt~~ll~aa~----~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
.++|++|||||+......+.. ....+++|+.|+..+.+++. +.+.+||++||...+.
T Consensus 82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~---------------- 145 (258)
T 4gkb_A 82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT---------------- 145 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH----------------
T ss_pred CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc----------------
Confidence 469999999998654333332 45688999999988888764 3345999999987431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCC--chHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.||+..+.+.+.++.+ +||++..|.||.|..|....... ..............|+ + +-
T Consensus 146 ~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---g-----~R 217 (258)
T 4gkb_A 146 GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL---G-----RR 217 (258)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT---T-----TS
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC---C-----CC
Confidence 1112378999999999999999875 48999999999998765321000 0001122222332221 0 12
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+...+|+|.++++++... .+| ++.+.+|
T Consensus 218 ~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG 249 (258)
T 4gkb_A 218 FTTPDEIADTAVFLLSPRASHTTGEWLFVDGG 249 (258)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhcCccCCeEEECCC
Confidence 567899999999999754 345 5666554
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.7e-20 Score=173.65 Aligned_cols=215 Identities=10% Similarity=-0.024 Sum_probs=152.8
Q ss_pred cCCCCeEEEEcCCCh--hHHHHHHHHHhCCCeEEEEecCCCC-CccccccccCCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGF--VGSHLVDRLMDRGDSVIVVDNYFTG-KKDNLIHHFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~--IG~~l~~~L~~~G~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+++||||+|+ ||++++++|+++|++|++++|+... ..+++... ...+.++.+|+++..
T Consensus 23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (280)
T 3nrc_A 23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAE--FNPAAVLPCDVISDQEIKDLFVELGKV 100 (280)
T ss_dssp TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGG--GCCSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHh--cCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 467899999999955 9999999999999999999996510 11111111 235788999998763
Q ss_pred ccCCCEEEEeccCCCCC---------CcccChHHHHHHHHHHHHHHHHHHHHC----CCeEEEEeCccccCCCCCCCCCC
Q 013226 177 LLEVDQIYHLACPASPV---------HYKFNPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~---------~~~~~~~~~~~~Nv~gt~~ll~aa~~~----g~r~v~~SS~~v~g~~~~~~~~e 243 (447)
+.++|+||||||..... .........+++|+.++.++++++... +.+||++||...+.
T Consensus 101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~--------- 171 (280)
T 3nrc_A 101 WDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK--------- 171 (280)
T ss_dssp CSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS---------
T ss_pred cCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc---------
Confidence 23689999999976431 111234568999999999999987653 34999999987542
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
+......|+.||++.+.+++.++.+ .|+++.+++||.|.++...... ....+........+.
T Consensus 172 -------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p~------ 236 (280)
T 3nrc_A 172 -------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGIS--NFKKMLDYNAMVSPL------ 236 (280)
T ss_dssp -------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCT--THHHHHHHHHHHSTT------
T ss_pred -------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCc--chHHHHHHHHhcCCC------
Confidence 2223478999999999999998876 5899999999999987543211 112333333332221
Q ss_pred CeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
..+..++|+|+++++++.+. ..| .+++.+|..
T Consensus 237 ---~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG~~ 272 (280)
T 3nrc_A 237 ---KKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYH 272 (280)
T ss_dssp ---CSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTTGG
T ss_pred ---CCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCCcc
Confidence 23678899999999999754 234 777776644
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=176.21 Aligned_cols=217 Identities=15% Similarity=0.053 Sum_probs=151.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEecccccccc-----------c
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPIL-----------L 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~-----------~ 178 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+... .
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g 108 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIA 108 (275)
T ss_dssp HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 3578999999999999999999999999999999999754433211111 123468889999987631 3
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|+||||||......... +....+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~--------------- 173 (275)
T 4imr_A 109 PVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR--------------- 173 (275)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC---------------
Confidence 6999999999765443322 245689999999999998873 3444 999999987653
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCC-CeEEecCCCeeEc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKE-PLTVYGDGKQTRS 325 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 325 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.+.++....... ............. ++ .-
T Consensus 174 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~~~p~---------~r 242 (275)
T 4imr_A 174 -PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRA-QDPEGWDEYVRTLNWM---------GR 242 (275)
T ss_dssp -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHH-HCHHHHHHHHHHHSTT---------CS
T ss_pred -CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccc-cChHHHHHHHhhcCcc---------CC
Confidence 12223679999999999999998765 8999999999998753210000 0011111111111 11 12
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+..++|+|+++++++.+. ..| .+++.+|
T Consensus 243 ~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 274 (275)
T 4imr_A 243 AGRPEEMVGAALFLASEACSFMTGETIFLTGG 274 (275)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred CcCHHHHHHHHHHHcCcccCCCCCCEEEeCCC
Confidence 567899999999999754 235 6666543
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=167.50 Aligned_cols=203 Identities=15% Similarity=0.200 Sum_probs=147.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCCCE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEVDQ 182 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~ 182 (447)
.|+||||||+++||+++++.|+++|++|++++|+.+... ++.. ...++.++.+|++++. +.++|+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~-~~~~--~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDi 78 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSA-DFAK--ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDV 78 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHT--TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH--hcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 588999999999999999999999999999998643221 1111 2346888999998763 346999
Q ss_pred EEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 183 IYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
+|||||......+.+ +.+..+++|+.|+..+.+++. +.+.++|++||...+. +...
T Consensus 79 LVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~----------------~~~~ 142 (247)
T 3ged_A 79 LVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQ----------------SEPD 142 (247)
T ss_dssp EEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTS----------------CCTT
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccccc----------------CCCC
Confidence 999999866544433 355689999999988887764 3445999999987542 1112
Q ss_pred CChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHH
Q 013226 255 RSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 332 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 332 (447)
...|+.||+....+.+.++.++ ++++.+|.||.|-.+.. ..+.......-|+. -+...+|+
T Consensus 143 ~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~--------~~~~~~~~~~~Pl~---------R~g~pedi 205 (247)
T 3ged_A 143 SEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQ--------QEFTQEDCAAIPAG---------KVGTPKDI 205 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC-----------CCHHHHHTSTTS---------SCBCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCc--------HHHHHHHHhcCCCC---------CCcCHHHH
Confidence 3789999999999999998765 79999999999876643 11222223332221 25678999
Q ss_pred HHHHHHHHcCCC-CC-cEEecCC
Q 013226 333 VEGLIRLMEGDH-VG-PFNLGNP 353 (447)
Q Consensus 333 a~ai~~~l~~~~-~g-~~~i~~~ 353 (447)
|.++++++...- +| ++.+.+|
T Consensus 206 A~~v~fL~s~~~iTG~~i~VDGG 228 (247)
T 3ged_A 206 SNMVLFLCQQDFITGETIIVDGG 228 (247)
T ss_dssp HHHHHHHHHCSSCCSCEEEESTT
T ss_pred HHHHHHHHhCCCCCCCeEEECcC
Confidence 999999997542 35 5555544
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=167.41 Aligned_cols=213 Identities=13% Similarity=0.055 Sum_probs=149.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc-------cCCCEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL-------LEVDQIY 184 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------~~~d~Vi 184 (447)
+++||+++||||+++||+++++.|+++|++|++.+|+......+... ....++..+.+|+.++.. .++|++|
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~-~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV 84 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIA-KDGGNASALLIDFADPLAAKDSFTDAGFDILV 84 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHH-HTTCCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHH-HhCCcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence 57899999999999999999999999999999999864321111111 123468889999988643 3599999
Q ss_pred EeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCC--CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 185 HLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVG--ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 185 h~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
||||+.......+ +.+..+++|+.|+..+.+++ ++.+ .+||++||..... +...
T Consensus 85 NNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~----------------g~~~ 148 (247)
T 4hp8_A 85 NNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ----------------GGIR 148 (247)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCSS
T ss_pred ECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC----------------CCCC
Confidence 9999876554433 35568999999998888864 3333 3999999987432 1112
Q ss_pred CChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHH
Q 013226 255 RSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 331 (447)
...|+.||+....+.+.++.++ ||++..|.||.|..|........ ......+...-|+.. +-..+|
T Consensus 149 ~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~--~~~~~~~~~~~PlgR---------~g~pee 217 (247)
T 4hp8_A 149 VPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRAD--AARNKAILERIPAGR---------WGHSED 217 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTS--HHHHHHHHTTCTTSS---------CBCTHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccC--HHHHHHHHhCCCCCC---------CcCHHH
Confidence 3689999999999999998764 89999999999987642100000 112223333333321 456799
Q ss_pred HHHHHHHHHcCCC---CC-cEEecC
Q 013226 332 LVEGLIRLMEGDH---VG-PFNLGN 352 (447)
Q Consensus 332 ~a~ai~~~l~~~~---~g-~~~i~~ 352 (447)
+|.++++++.... .| ++.+.+
T Consensus 218 iA~~v~fLaSd~a~~iTG~~i~VDG 242 (247)
T 4hp8_A 218 IAGAAVFLSSAAADYVHGAILNVDG 242 (247)
T ss_dssp HHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred HHHHHHHHhCchhcCCcCCeEEECc
Confidence 9999999987543 45 555544
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-20 Score=174.47 Aligned_cols=217 Identities=21% Similarity=0.191 Sum_probs=154.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc-----------cC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL-----------LE 179 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-----------~~ 179 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+..... .+.... ..++.++.+|+.+... .+
T Consensus 26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~-~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 103 (281)
T 3ppi_A 26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGK-ALADEL-GNRAEFVSTNVTSEDSVLAAIEAANQLGR 103 (281)
T ss_dssp GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHH-CTTEEEEECCTTCHHHHHHHHHHHTTSSE
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHH-HHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4678899999999999999999999999999999998643222 122222 3468899999977631 35
Q ss_pred CCEEEEe-ccCCCCCCc------cc---ChHHHHHHHHHHHHHHHHHHHH----------CCC-eEEEEeCccccCCCCC
Q 013226 180 VDQIYHL-ACPASPVHY------KF---NPVKTIKTNVVGTLNMLGLAKR----------VGA-RFLLTSTSEVYGDPLQ 238 (447)
Q Consensus 180 ~d~Vih~-Ag~~~~~~~------~~---~~~~~~~~Nv~gt~~ll~aa~~----------~g~-r~v~~SS~~v~g~~~~ 238 (447)
+|+|||| |+....... .. ...+.+++|+.++.++++++.. .+. +||++||...+.
T Consensus 104 id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 179 (281)
T 3ppi_A 104 LRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE---- 179 (281)
T ss_dssp EEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS----
T ss_pred CCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC----
Confidence 8999999 544332211 11 2467899999999999988752 123 899999988652
Q ss_pred CCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeE
Q 013226 239 HPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 315 (447)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~ 315 (447)
+......|+.||++.+.+++.++.++ |+++.+|+||.|.++.... +............+..
T Consensus 180 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~~~~~~~~~~~~ 243 (281)
T 3ppi_A 180 ------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMES----VGEEALAKFAANIPFP 243 (281)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----TCHHHHHHHHHTCCSS
T ss_pred ------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhc----ccHHHHHHHHhcCCCC
Confidence 22234789999999999999998764 8999999999998753211 1122333333332221
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCCC-CC-cEEecCCCccC
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGDH-VG-PFNLGNPGEFT 357 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~~-~g-~~~i~~~~~~s 357 (447)
..+.+++|+|+++++++.+.. .| .+++.+|..++
T Consensus 244 --------~~~~~pedvA~~v~~l~s~~~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 244 --------KRLGTPDEFADAAAFLLTNGYINGEVMRLDGAQRFT 279 (281)
T ss_dssp --------SSCBCHHHHHHHHHHHHHCSSCCSCEEEESTTCCCC
T ss_pred --------CCCCCHHHHHHHHHHHHcCCCcCCcEEEECCCcccC
Confidence 247899999999999998653 34 77777766554
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=176.42 Aligned_cols=214 Identities=11% Similarity=0.034 Sum_probs=136.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----c---c-cCCCEEEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----I---L-LEVDQIYH 185 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~---~-~~~d~Vih 185 (447)
+|+|+||||+|+||++++++|+++|++|++++|+...... . +.+|+.+. . + .++|+|||
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-----------~-~~~Dl~~~~~v~~~~~~~~~~id~lv~ 68 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-----------D-LSTAEGRKQAIADVLAKCSKGMDGLVL 68 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-----------C-TTSHHHHHHHHHHHHTTCTTCCSEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-----------c-cccCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 3689999999999999999999999999999996432211 1 44555443 2 2 46799999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCC-----cCC-------C
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAET-----YWG-------N 248 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~-----~~~-------~ 248 (447)
|||.... ....+..+++|+.|+.++++++. +.+. +||++||...+..+...+..+. .+. .
T Consensus 69 ~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (257)
T 1fjh_A 69 CAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEH 145 (257)
T ss_dssp CCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhhc
Confidence 9997541 13477899999999999998875 3443 9999999987732211111000 000 0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
..+..+...|+.||++.+.+++.++.+ .|+++++|+||.+.++..... ............ + ......
T Consensus 146 ~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~-----~--~~~~~~ 215 (257)
T 1fjh_A 146 AGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG---LQDPRYGESIAK-----F--VPPMGR 215 (257)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------------C--CCSTTS
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhh---ccchhHHHHHHh-----c--ccccCC
Confidence 012223478999999999999998876 589999999999988753110 000000011100 0 001124
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+++++|+|+++++++..+ ..| .+++.++
T Consensus 216 ~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG 247 (257)
T 1fjh_A 216 RAEPSEMASVIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp CCCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CCCHHHHHHHHHHHhCchhcCCcCCEEEECCC
Confidence 789999999999999764 335 5666654
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=176.62 Aligned_cols=218 Identities=12% Similarity=0.024 Sum_probs=145.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCC--cccccccc--CCCceEEEeccccccc----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGK--KDNLIHHF--GNPRFELIRHDVVEPI---------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~--~~~~~~~~--~~~~v~~~~~D~~~~~---------- 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|..... .+.+...+ ...++.++.+|+.+..
T Consensus 7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 457889999999999999999999999999999998753211 11111111 1347889999998763
Q ss_pred --ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC--C-CeEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 --LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV--G-ARFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~--g-~r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|+||||||........+ +....+++|+.|+.++++++... + .++|++||...+..
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~------------ 154 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAY------------ 154 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHH------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccC------------
Confidence 236999999999865544332 24467899999999999999875 2 38999999875432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
......|+.||++.+.+++.++.++ |+++.+|+||.|..+..... ........+.......
T Consensus 155 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~------------~~~~~~~~~~~~~~~~ 218 (262)
T 3ksu_A 155 ----TGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQ------------ETKESTAFHKSQAMGN 218 (262)
T ss_dssp ----HCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTC------------C------------CCC
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc------------CchHHHHHHHhcCccc
Confidence 1123679999999999999998875 89999999999876421100 0000001111111223
Q ss_pred ccccHHHHHHHHHHHHcCC--CCC-cEEecCCCcc
Q 013226 325 SFQFVSDLVEGLIRLMEGD--HVG-PFNLGNPGEF 356 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~--~~g-~~~i~~~~~~ 356 (447)
.+..++|+|+++++++.+. ..| .+++.++...
T Consensus 219 r~~~pedvA~~v~~L~s~~~~itG~~i~vdGg~~~ 253 (262)
T 3ksu_A 219 QLTKIEDIAPIIKFLTTDGWWINGQTIFANGGYTT 253 (262)
T ss_dssp CSCCGGGTHHHHHHHHTTTTTCCSCEEEESTTCCC
T ss_pred CCCCHHHHHHHHHHHcCCCCCccCCEEEECCCccC
Confidence 4678899999999999862 235 6666655433
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=170.53 Aligned_cols=200 Identities=12% Similarity=0.026 Sum_probs=144.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---c---cccc--CCCceEEEeccccccc------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---L---IHHF--GNPRFELIRHDVVEPI------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~---~~~~--~~~~v~~~~~D~~~~~------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+. + .... ...++.++.+|+++..
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 84 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAV 84 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 457889999999999999999999999999999999975532211 1 1111 1347889999998763
Q ss_pred ------ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----CC-eEEEEeCccccCCCCCCCC
Q 013226 177 ------LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHPQ 241 (447)
Q Consensus 177 ------~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g~-r~v~~SS~~v~g~~~~~~~ 241 (447)
+.++|+||||||......... .....+++|+.|+.++++++... +. +||++||...+..
T Consensus 85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------ 158 (285)
T 3sc4_A 85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP------ 158 (285)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG------
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC------
Confidence 236999999999865443333 24457889999999999988654 33 9999999764321
Q ss_pred CCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEec
Q 013226 242 AETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 242 ~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
.......|+.||++.+.+++.++.+ .|+++++|+||.+... .+.........
T Consensus 159 ---------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t-----------~~~~~~~~~~~----- 213 (285)
T 3sc4_A 159 ---------KWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT-----------AAVQNLLGGDE----- 213 (285)
T ss_dssp ---------GGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC-----------HHHHHHHTSCC-----
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc-----------HHHHhhccccc-----
Confidence 0122378999999999999999876 5899999999843321 12222222211
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~~ 344 (447)
....+...+|+|+++++++.++.
T Consensus 214 ---~~~r~~~pedvA~~~~~l~s~~~ 236 (285)
T 3sc4_A 214 ---AMARSRKPEVYADAAYVVLNKPS 236 (285)
T ss_dssp ---CCTTCBCTHHHHHHHHHHHTSCT
T ss_pred ---cccCCCCHHHHHHHHHHHhCCcc
Confidence 11246788999999999998764
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=167.56 Aligned_cols=192 Identities=12% Similarity=0.026 Sum_probs=135.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc---------cCCCEEEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL---------LEVDQIYH 185 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~---------~~~d~Vih 185 (447)
+|+++||||+|+||++++++|+++|++|++++|+..... ...... ..++.++.+|+.+... ...|+|||
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~ 78 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLS-TVTNCL-SNNVGYRARDLASHQEVEQLFEQLDSIPSTVVH 78 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHH-HHHHTC-SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEE
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHH-hhccCeEeecCCCHHHHHHHHHHHhhcCCEEEE
Confidence 367999999999999999999999999999999643222 111111 3467888899977631 12499999
Q ss_pred eccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCCh
Q 013226 186 LACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSC 257 (447)
Q Consensus 186 ~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~ 257 (447)
|||......... +....+++|+.|+.++++++.+. +.+||++||...+. +......
T Consensus 79 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~~~~~ 142 (230)
T 3guy_A 79 SAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ----------------PKAQEST 142 (230)
T ss_dssp CCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS----------------CCTTCHH
T ss_pred eCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC----------------CCCCCch
Confidence 999765443332 24568899999999999987553 33899999987652 2223478
Q ss_pred HHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 334 (447)
|+.||++.+.+++.++.++ |+++.+++||.+..+... .... . .....+++++|+|+
T Consensus 143 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~------------~~~~--~-------~~~~~~~~~~dvA~ 201 (230)
T 3guy_A 143 YCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWE------------TSGK--S-------LDTSSFMSAEDAAL 201 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC-------------------------------------CCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHH------------hcCC--C-------CCcccCCCHHHHHH
Confidence 9999999999999998775 899999999998765321 0000 0 11235789999999
Q ss_pred HHHHHHcCCCC
Q 013226 335 GLIRLMEGDHV 345 (447)
Q Consensus 335 ai~~~l~~~~~ 345 (447)
++++++.++..
T Consensus 202 ~i~~l~~~~~~ 212 (230)
T 3guy_A 202 MIHGALANIGN 212 (230)
T ss_dssp HHHHHCCEETT
T ss_pred HHHHHHhCcCC
Confidence 99999986654
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=175.67 Aligned_cols=204 Identities=15% Similarity=0.079 Sum_probs=139.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~----------- 176 (447)
.++++|++|||||+|+||++++++|+++|++|++++|+.....+ ....+ ....+.++.+|+++..
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 107 (281)
T 4dry_A 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDA-AAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA 107 (281)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999996432211 11111 1223588999998763
Q ss_pred -ccCCCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHHH----HCC---CeEEEEeCccccCCCCCCCCCC
Q 013226 177 -LLEVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLAK----RVG---ARFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g---~r~v~~SS~~v~g~~~~~~~~e 243 (447)
+.++|+||||||.... .... ++....+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~--------- 178 (281)
T 4dry_A 108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT--------- 178 (281)
T ss_dssp HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC---------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC---------
Confidence 2368999999997543 2222 2345689999999888877754 333 3999999987542
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
+......|+.||++.+.+++.++.+ .|+++.+|+||.|..+... .+ .. . .......
T Consensus 179 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~--------~~----~~-~-~~~~~~~ 237 (281)
T 4dry_A 179 -------PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTA--------RM----ST-G-VLQANGE 237 (281)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------------------C-E-EECTTSC
T ss_pred -------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhh--------hh----cc-h-hhhhhhc
Confidence 2223478999999999999999876 5899999999999875321 11 00 0 0000011
Q ss_pred CeeEccccHHHHHHHHHHHHcCCCC
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~~~ 345 (447)
.....++.++|+|+++++++.++..
T Consensus 238 ~~~~~~~~pedvA~~v~fL~s~~~~ 262 (281)
T 4dry_A 238 VAAEPTIPIEHIAEAVVYMASLPLS 262 (281)
T ss_dssp EEECCCBCHHHHHHHHHHHHHSCTT
T ss_pred ccccCCCCHHHHHHHHHHHhCCCcc
Confidence 1123478999999999999998765
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=168.01 Aligned_cols=195 Identities=18% Similarity=0.119 Sum_probs=142.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------c--c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------L--L 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~--~ 178 (447)
.++|+++||||+|+||++++++|+++|++|++++|+..... ....++.+|+.++. + .
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g 75 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA---------SASVIVKMTDSFTEQADQVTAEVGKLLGDQ 75 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS---------SEEEECCCCSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc---------CCcEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999999654321 13456778886652 1 3
Q ss_pred CCCEEEEeccCCCCCCc-cc----ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 179 EVDQIYHLACPASPVHY-KF----NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~-~~----~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
++|+||||||......+ .. +....+++|+.++.++++++.+. +.+||++||...+..
T Consensus 76 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 140 (241)
T 1dhr_A 76 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDG--------------- 140 (241)
T ss_dssp CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC---------------
T ss_pred CCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccC---------------
Confidence 79999999997653332 22 24568899999999999998764 239999999886532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh-----CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL-----GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.+|++.+.+++.++.+. |+++++|+||.+..+. ........ ....
T Consensus 141 -~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~------------~~~~~~~~---------~~~~ 198 (241)
T 1dhr_A 141 -TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM------------NRKSMPEA---------DFSS 198 (241)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH------------HHHHSTTS---------CGGG
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc------------ccccCcch---------hhcc
Confidence 1223789999999999999998654 5999999999887542 11111111 1124
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+++.+|+|+++++++.... .| .+.+.++
T Consensus 199 ~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g~ 230 (241)
T 1dhr_A 199 WTPLEFLVETFHDWITGNKRPNSGSLIQVVTT 230 (241)
T ss_dssp SEEHHHHHHHHHHHHTTTTCCCTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCcCccceEEEEeCC
Confidence 5788999999999997643 24 5555443
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=170.34 Aligned_cols=197 Identities=15% Similarity=0.104 Sum_probs=135.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCCCEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEVDQI 183 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~d~V 183 (447)
|+++||||+|+||++++++|+++|++|++++|+.... +.+..... .++.++.+|++++. +.++|+|
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l 78 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERL-QELKDELG-DNLYIAQLDVRNRAAIEEMLASLPAEWCNIDIL 78 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHC-TTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc-CceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 5799999999999999999999999999999864321 11211121 36788999997753 2369999
Q ss_pred EEeccCCC-CCCcc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 184 YHLACPAS-PVHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 184 ih~Ag~~~-~~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
|||||... ..... .+....+++|+.|+.++++++. +.+. +||++||...+.. ..
T Consensus 79 vnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~----------------~~ 142 (248)
T 3asu_A 79 VNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWP----------------YA 142 (248)
T ss_dssp EECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC----------------CT
T ss_pred EECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccC----------------CC
Confidence 99999753 12111 2345689999999999888875 3444 9999999875421 12
Q ss_pred CCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccC-CCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYG-PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~G-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
....|+.||+..+.+++.++.+. |+++++|+||.|.| +... ..+... ..... ..+ ....++++
T Consensus 143 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~---~~~~~~--~~~~~----~~~----~~~~~~~p 209 (248)
T 3asu_A 143 GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSN---VRFKGD--DGKAE----KTY----QNTVALTP 209 (248)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-----------------------------------CCBCH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchh---hcccCc--hHHHH----HHH----hccCCCCH
Confidence 23789999999999999998764 89999999999994 4310 000000 00000 000 01234789
Q ss_pred HHHHHHHHHHHcCC
Q 013226 330 SDLVEGLIRLMEGD 343 (447)
Q Consensus 330 ~D~a~ai~~~l~~~ 343 (447)
+|+|+++++++.++
T Consensus 210 ~dvA~~v~~l~s~~ 223 (248)
T 3asu_A 210 EDVSEAVWWVSTLP 223 (248)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999864
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=170.38 Aligned_cols=217 Identities=10% Similarity=0.007 Sum_probs=153.6
Q ss_pred ccCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc---------
Q 013226 111 LQRKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI--------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~--------- 176 (447)
..+++|+++||||+ |+||++++++|+++|++|++++|+.....++....+ ...++.++.+|+.+..
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDV 95 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHH
Confidence 35688999999999 999999999999999999999987544311111111 1346888899997763
Q ss_pred ---ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCC
Q 013226 177 ---LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 ---~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+.++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 166 (267)
T 3gdg_A 96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIA--------- 166 (267)
T ss_dssp HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC---------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEcccccccc---------
Confidence 236899999999865443222 34568999999999999887 44444 9999999875421
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhC--CcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG--IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~--i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
........|+.||++.+.+++.++.+++ +++.+++||.+..+-.... ............+
T Consensus 167 -----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~~--------- 228 (267)
T 3gdg_A 167 -----NFPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV----PKETQQLWHSMIP--------- 228 (267)
T ss_dssp -----CSSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS----CHHHHHHHHTTST---------
T ss_pred -----CCCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC----CHHHHHHHHhcCC---------
Confidence 1112347899999999999999988764 8999999999987643211 1222222222211
Q ss_pred eEccccHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
...+.+++|+|+++++++.... .| .+++.+|.
T Consensus 229 ~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~ 264 (267)
T 3gdg_A 229 MGRDGLAKELKGAYVYFASDASTYTTGADLLIDGGY 264 (267)
T ss_dssp TSSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHhHhheeecCccccccCCEEEECCce
Confidence 2246788999999999997643 34 77776654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=171.18 Aligned_cols=216 Identities=14% Similarity=0.095 Sum_probs=151.5
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
.+++||+++||||+++||+++++.|+++|++|++++|+.+...+.. ..+ ..++..+.+|++++. +.
T Consensus 25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~-~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAI-AEI-GGGAVGIQADSANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHH-CTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HHc-CCCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3589999999999999999999999999999999999654322222 222 246778899997763 34
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
++|++|||||......+.+ +.+..+++|+.|+..+.+++...- .++|++||..... +
T Consensus 103 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~----------------~ 166 (273)
T 4fgs_A 103 RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST----------------G 166 (273)
T ss_dssp CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS----------------C
T ss_pred CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc----------------C
Confidence 6999999999865544433 355689999999999999886542 2899999987432 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCC--Cc-hHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDD--GR-VVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.||++...+.+.++.++ ||++..|.||.|..|...... .. -...+...+...-|+. -
T Consensus 167 ~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~Plg---------R 237 (273)
T 4fgs_A 167 TPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMG---------R 237 (273)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTS---------S
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCC---------C
Confidence 1223789999999999999998765 899999999999876432110 00 1122333333332322 1
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+...+|+|.++++++.+.. .| .+.+.+|
T Consensus 238 ~g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG 269 (273)
T 4fgs_A 238 VGRAEEVAAAALFLASDDSSFVTGAELFVDGG 269 (273)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhcCccCCeEeECcC
Confidence 4567999999999997543 45 5555443
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-20 Score=171.44 Aligned_cols=215 Identities=16% Similarity=0.041 Sum_probs=150.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------cc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++||+++||||+++||+++++.|+++|++|++.+|+.+...+..... ....++..+.+|++++. +.
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 578999999999999999999999999999999998644322211111 12346888999998763 34
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----H-CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----R-VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~-~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
++|++|||||......+.+ +.+..+++|+.|+..+.+++. + .+. +||++||.....
T Consensus 86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~-------------- 151 (255)
T 4g81_D 86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA-------------- 151 (255)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS--------------
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC--------------
Confidence 6999999999876555443 255689999999988887652 2 233 999999987532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.||+....+.+.++.+ +||++..|.||.|..|........ ..+........|+..
T Consensus 152 --~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~--~~~~~~~~~~~Pl~R--------- 218 (255)
T 4g81_D 152 --ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIED--KQFDSWVKSSTPSQR--------- 218 (255)
T ss_dssp --BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTC--HHHHHHHHHHSTTCS---------
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCC--HHHHHHHHhCCCCCC---------
Confidence 1122378999999999999999876 489999999999987642100000 122222233223221
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+...+|+|.++++++... ..| .+.+.+|
T Consensus 219 ~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 219 WGRPEELIGTAIFLSSKASDYINGQIIYVDGG 250 (255)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhCCCcCCEEEECCC
Confidence 456689999999998754 345 5555443
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=167.99 Aligned_cols=215 Identities=14% Similarity=0.046 Sum_probs=151.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc-------------
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------- 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------- 177 (447)
+++|+++||||+|+||++++++|+++|++|++++++.....+.....+ ...++.++.+|+.+...
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 84 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999987554332222221111 23467888899876521
Q ss_pred -----cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC--C-CeEEEEeCccccCCCCCCCCCCCc
Q 013226 178 -----LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV--G-ARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 178 -----~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~--g-~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
..+|+||||||......... .....+++|+.|+.++++++... + .+||++||...+..
T Consensus 85 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~---------- 154 (255)
T 3icc_A 85 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRIS---------- 154 (255)
T ss_dssp HHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSC----------
T ss_pred ccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccC----------
Confidence 13899999999765443332 23457899999999999998765 2 38999999875422
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
......|+.||++.+.+++.++.++ ++++.+++||.+.++........ ..+........+
T Consensus 155 ------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~~~~~~~~--------- 217 (255)
T 3icc_A 155 ------LPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSD--PMMKQYATTISA--------- 217 (255)
T ss_dssp ------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTS--HHHHHHHHHTST---------
T ss_pred ------CCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhccc--HHHHHhhhccCC---------
Confidence 2223789999999999999998764 89999999999988754221111 111222222221
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
...+.+++|+|+++++++... ..| .+++.+|.
T Consensus 218 ~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~ 253 (255)
T 3icc_A 218 FNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGS 253 (255)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSST
T ss_pred cCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCCe
Confidence 123678999999999998654 234 77776653
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=168.17 Aligned_cols=213 Identities=15% Similarity=0.096 Sum_probs=140.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc-------ccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI-------LLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~-------~~~~d~Vih~A 187 (447)
|+++||||+|+||++++++|+++|++|++++|+..... ..... ....++..++.+..+.. +.++|+|||||
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~nA 80 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKD-ELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSND 80 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH-HHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEEC
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 67999999999999999999999999999998644321 11110 00112333322222222 24799999999
Q ss_pred cCC-CCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCCh
Q 013226 188 CPA-SPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSC 257 (447)
Q Consensus 188 g~~-~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~ 257 (447)
|.. ....... +....+++|+.|+.++++++. +.+. +||++||...+.. ......
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------------~~~~~~ 144 (254)
T 1zmt_A 81 IFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGP----------------WKELST 144 (254)
T ss_dssp CCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSC----------------CTTCHH
T ss_pred CcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccC----------------CCCchH
Confidence 976 3222222 245689999999999988874 3343 9999999875421 122378
Q ss_pred HHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCC-CchH---HHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 258 YDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDD-GRVV---SNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
|+.||++.+.+++.++.++ |+++++|+||.++||...... ..+. ...........+ ...+.+++
T Consensus 145 Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p---------~~~~~~p~ 215 (254)
T 1zmt_A 145 YTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA---------LQRLGTQK 215 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS---------SSSCBCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCC---------CCCCcCHH
Confidence 9999999999999998764 899999999999887532110 0000 111111111111 11367899
Q ss_pred HHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 331 DLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 331 D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
|+|+++++++.++. .| .+++.++.
T Consensus 216 dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 243 (254)
T 1zmt_A 216 ELGELVAFLASGSCDYLTGQVFWLAGGF 243 (254)
T ss_dssp HHHHHHHHHHTTSCGGGTTCEEEESTTC
T ss_pred HHHHHHHHHhCcccCCccCCEEEECCCc
Confidence 99999999998653 34 66666553
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=171.25 Aligned_cols=212 Identities=13% Similarity=0.019 Sum_probs=147.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEe-cCCCCCcccccccc---CCCceEEEeccccccc-----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVD-NYFTGKKDNLIHHF---GNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~-r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~----------- 176 (447)
.+++|+++||||+|+||++++++|+++|++|++++ |+.+.. +.....+ ...++.++.+|+.+..
T Consensus 6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~-~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (291)
T 1e7w_A 6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEA-NALSATLNARRPNSAITVQADLSNVATAPVSGADGSA 84 (291)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH-HHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHH-HHHHHHHhhhcCCeeEEEEeecCCccccccccccccc
Confidence 45789999999999999999999999999999999 753221 1111111 1246888899988765
Q ss_pred ------c------------cCCCEEEEeccCCCCCCcc------------------cChHHHHHHHHHHHHHHHHHHH--
Q 013226 177 ------L------------LEVDQIYHLACPASPVHYK------------------FNPVKTIKTNVVGTLNMLGLAK-- 218 (447)
Q Consensus 177 ------~------------~~~d~Vih~Ag~~~~~~~~------------------~~~~~~~~~Nv~gt~~ll~aa~-- 218 (447)
. .++|+||||||........ ......+++|+.|+.++++++.
T Consensus 85 ~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 164 (291)
T 1e7w_A 85 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHR 164 (291)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2699999999976433221 2234688999999999988865
Q ss_pred --HCC------C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeec
Q 013226 219 --RVG------A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIF 286 (447)
Q Consensus 219 --~~g------~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~ 286 (447)
+.+ . +||++||...+.. ......|+.||++.+.+++.++.+ .|+++++|+||
T Consensus 165 m~~~~~~~~~~~g~Iv~isS~~~~~~----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG 228 (291)
T 1e7w_A 165 VAGTPAKHRGTNYSIINMVDAMTNQP----------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPG 228 (291)
T ss_dssp HHTSCGGGSCSCEEEEEECCTTTTSC----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEES
T ss_pred HHhcCCCCCCCCcEEEEEechhhcCC----------------CCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeC
Confidence 344 4 8999999875421 122378999999999999999876 48999999999
Q ss_pred cccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 287 NTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 287 ~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
.+..+. . .. ..+........++ + .-+...+|+|+++++++... ..| .+++.++.
T Consensus 229 ~v~T~~-~-~~----~~~~~~~~~~~p~---~-----~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~ 286 (291)
T 1e7w_A 229 LSVLVD-D-MP----PAVWEGHRSKVPL---Y-----QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGY 286 (291)
T ss_dssp SBCCGG-G-SC----HHHHHHHHTTCTT---T-----TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CccCCc-c-CC----HHHHHHHHhhCCC---C-----CCCCCHHHHHHHHHHHhCCcccCccCcEEEECCCc
Confidence 987764 1 11 2222222222111 0 02578999999999999753 245 56665553
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=170.33 Aligned_cols=203 Identities=13% Similarity=0.060 Sum_probs=135.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEeccccccc------------c
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~------------~ 177 (447)
..++ |+++||||+|+||++++++|+++|++|++++|+..... .+...+. ..++.++.+|+.+.. +
T Consensus 18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 95 (272)
T 2nwq_A 18 SHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQ-ALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEF 95 (272)
T ss_dssp ---C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGG
T ss_pred CCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 3455 89999999999999999999999999999998643221 1111111 136888999997763 2
Q ss_pred cCCCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHHH----HCC-C-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 178 LEVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLAK----RVG-A-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g-~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
.++|+||||||.... ..+. .+....+++|+.|+.++++++. +.+ . +||++||...+..
T Consensus 96 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~----------- 164 (272)
T 2nwq_A 96 ATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWP----------- 164 (272)
T ss_dssp SSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSC-----------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccC-----------
Confidence 358999999997542 2222 2345689999999888777663 333 4 9999999875421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.+|++.+.+++.++.+ .|+++++|+||.+.++.... ..... ..........
T Consensus 165 -----~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~--------~~~~~-~~~~~~~~~~---- 226 (272)
T 2nwq_A 165 -----YPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLV--------RFGGD-QARYDKTYAG---- 226 (272)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-----------------------------C----
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhc--------ccccc-hHHHHHhhcc----
Confidence 122368999999999999999876 48999999999998764210 00000 0000000000
Q ss_pred EccccHHHHHHHHHHHHcCCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~ 344 (447)
..++..+|+|+++++++.++.
T Consensus 227 ~~~~~pedvA~~v~~l~s~~~ 247 (272)
T 2nwq_A 227 AHPIQPEDIAETIFWIMNQPA 247 (272)
T ss_dssp CCCBCHHHHHHHHHHHHTSCT
T ss_pred CCCCCHHHHHHHHHHHhCCCc
Confidence 124789999999999998653
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-19 Score=169.47 Aligned_cols=216 Identities=16% Similarity=0.103 Sum_probs=148.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... ++.... ..++.++.+|+++.. +.+
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLR-ELEVAH-GGNAVGVVGDVRSLQDQKRAAERCLAAFGK 79 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHT-BTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHH-HHHHHc-CCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 357899999999999999999999999999999998643221 111111 346888999998753 246
Q ss_pred CCEEEEeccCCCCCC-cc----c----ChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcC
Q 013226 180 VDQIYHLACPASPVH-YK----F----NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~-~~----~----~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+|+||||||+..... .. . .....+++|+.|+.++++++.. .+.++|++||...+.
T Consensus 80 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------ 147 (281)
T 3zv4_A 80 IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY------------ 147 (281)
T ss_dssp CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS------------
T ss_pred CCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc------------
Confidence 999999999754321 11 1 1455789999999999988744 335999999987542
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCch----HH--HHHHHHHhCCCeEEec
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRV----VS--NFVAQALRKEPLTVYG 318 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~----~~--~~~~~~~~~~~~~~~~ 318 (447)
+......|+.||++.+.+++.++.++ .+++.+|+||.+..+-........ .. .+........++
T Consensus 148 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---- 219 (281)
T 3zv4_A 148 ----PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPI---- 219 (281)
T ss_dssp ----SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCTT----
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCCC----
Confidence 22233679999999999999998775 399999999999876432110000 00 011112222211
Q ss_pred CCCeeEccccHHHHHHHHHHHHc-CC---CCC-cEEecCCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLME-GD---HVG-PFNLGNPG 354 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~-~~---~~g-~~~i~~~~ 354 (447)
..+..++|+|+++++++. .. ..| .+++.+|.
T Consensus 220 -----~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~ 255 (281)
T 3zv4_A 220 -----GRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGM 255 (281)
T ss_dssp -----SSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSG
T ss_pred -----CCCCCHHHHHHHHHHhhcccccccccCcEEEECCCC
Confidence 236778999999999998 33 235 67776553
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-20 Score=174.19 Aligned_cols=201 Identities=16% Similarity=-0.009 Sum_probs=143.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEecCCCCCcccccccc--CCCceEEEecccccccc------------c
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMD-RGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPIL------------L 178 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~-~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~~------------~ 178 (447)
++|+|+||||+||||++++++|++ +|++|++++|+.....+ ....+ ...++.++.+|+.+... .
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQA-AVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 81 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHH-HHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHH-HHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999 99999999986432211 11111 12467889999987531 2
Q ss_pred CCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCC-CC----------CCC
Q 013226 179 EVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGD-PL----------QHP 240 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~-~~----------~~~ 240 (447)
++|+||||||........ .+....+++|+.|+.++++++.+.. .+||++||...+.. .. ...
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~~ 161 (276)
T 1wma_A 82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSET 161 (276)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSS
T ss_pred CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhccccc
Confidence 699999999976433221 2345689999999999999998763 38999999876521 10 011
Q ss_pred CCCCcCC--------------CCCCCCCCChHHHHHHHHHHHHHHHHhh-------hCCcEEEEeeccccCCCCccCCCc
Q 013226 241 QAETYWG--------------NVNPIGVRSCYDEGKRTAETLTMDYHRG-------LGIEARIARIFNTYGPRMCIDDGR 299 (447)
Q Consensus 241 ~~e~~~~--------------~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-------~~i~~~ivRp~~i~Gp~~~~~~~~ 299 (447)
++|+.+. ...+..+...|+.||++.+.+++.++.+ .++++++|+||.|.++....
T Consensus 162 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~---- 237 (276)
T 1wma_A 162 ITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP---- 237 (276)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT----
T ss_pred cchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc----
Confidence 2222110 0011123478999999999999998765 48999999999998764210
Q ss_pred hHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 300 VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
..+.+++|+|+++++++..+
T Consensus 238 ------------------------~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 238 ------------------------KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp ------------------------TCSBCHHHHTHHHHHHHSCC
T ss_pred ------------------------cccCChhHhhhhHhhhhcCc
Confidence 13689999999999999754
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=171.40 Aligned_cols=200 Identities=11% Similarity=0.071 Sum_probs=144.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc---cCCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH---FGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~D~~~~~------------ 176 (447)
.+++|+|+||||+|+||++++++|+++|++|++++|+..... .+... ....++.++.+|+.+..
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQ-KVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999998643221 11111 12236888999998752
Q ss_pred ccCCCEEEEe-ccCCCCCCccc---ChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 177 LLEVDQIYHL-ACPASPVHYKF---NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 ~~~~d~Vih~-Ag~~~~~~~~~---~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+.++|+|||| ||.......+. .....+++|+.|+.++++++.. .+.+||++||...+..
T Consensus 104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~------------- 170 (286)
T 1xu9_A 104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVA------------- 170 (286)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSC-------------
T ss_pred cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccC-------------
Confidence 1369999999 56543222222 2456899999999999988754 2349999999875432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh-----CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL-----GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
..+...|+.||++.+.+++.++.++ ++++++++||.+.++. ......+ ...
T Consensus 171 ---~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~------------~~~~~~~---------~~~ 226 (286)
T 1xu9_A 171 ---YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET------------AMKAVSG---------IVH 226 (286)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH------------HHHHSCG---------GGG
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh------------HHHhccc---------ccc
Confidence 1234789999999999999987664 8999999999987642 1111110 112
Q ss_pred EccccHHHHHHHHHHHHcCCCCCcEE
Q 013226 324 RSFQFVSDLVEGLIRLMEGDHVGPFN 349 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~~g~~~ 349 (447)
..+++++|+|+.++.+++.+..+.|.
T Consensus 227 ~~~~~~~~vA~~i~~~~~~~~~~~~~ 252 (286)
T 1xu9_A 227 MQAAPKEECALEIIKGGALRQEEVYY 252 (286)
T ss_dssp GGCBCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHhcCCceEEe
Confidence 35789999999999999887665443
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=171.25 Aligned_cols=207 Identities=10% Similarity=0.019 Sum_probs=147.9
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc------cccc--cCCCceEEEeccccccc-----
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN------LIHH--FGNPRFELIRHDVVEPI----- 176 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~------~~~~--~~~~~v~~~~~D~~~~~----- 176 (447)
...+++|++|||||+|+||++++++|+++|++|++++|+....... .... ....++.++.+|+.++.
T Consensus 40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~ 119 (346)
T 3kvo_A 40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAA 119 (346)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 3467899999999999999999999999999999999976542211 0111 11346888999998763
Q ss_pred -------ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCC
Q 013226 177 -------LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHP 240 (447)
Q Consensus 177 -------~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~ 240 (447)
+.++|+||||||......... ....++++|+.|+.++++++.. .+. +||++||...+..
T Consensus 120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~----- 194 (346)
T 3kvo_A 120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNP----- 194 (346)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCG-----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCC-----
Confidence 237999999999865443332 2456899999999999998743 343 9999999875421
Q ss_pred CCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEec
Q 013226 241 QAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 241 ~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
.+......|+.||++.+.+++.++.++ ++++.+|.||.+... .+... +.+.
T Consensus 195 ---------~~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T-----------~~~~~-~~~~------ 247 (346)
T 3kvo_A 195 ---------VWFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT-----------AAMDM-LGGP------ 247 (346)
T ss_dssp ---------GGTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC-----------HHHHH-HCC-------
T ss_pred ---------CCCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc-----------HHHHh-hccc------
Confidence 012234789999999999999998875 799999999863332 11221 1111
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC--CCCcEEe
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD--HVGPFNL 350 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~--~~g~~~i 350 (447)
.....+..++|+|+++++++.+. ..|.+.+
T Consensus 248 --~~~~r~~~pedvA~~v~~L~s~~~~itG~~iv 279 (346)
T 3kvo_A 248 --GIESQCRKVDIIADAAYSIFQKPKSFTGNFVI 279 (346)
T ss_dssp ---CGGGCBCTHHHHHHHHHHHTSCTTCCSCEEE
T ss_pred --cccccCCCHHHHHHHHHHHHhcCCCCCceEEE
Confidence 11224678899999999999872 2355544
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=168.59 Aligned_cols=163 Identities=16% Similarity=0.096 Sum_probs=122.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+..... .+...+ ...++.++.+|+.+.. +
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALE-KAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 82 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999998643221 111111 1236788999998763 2
Q ss_pred cCCCEEEEeccCC-CCCCcc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPA-SPVHYK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~-~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||.. ...... ++....+++|+.|+.++++++.+ .+. +||++||...+..
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 150 (262)
T 1zem_A 83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKG------------ 150 (262)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSC------------
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC------------
Confidence 3699999999975 322222 22456899999999999888654 344 9999999875432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCC
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGP 291 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp 291 (447)
......|+.||+..+.+++.++.+ .|+++++|+||.+..+
T Consensus 151 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (262)
T 1zem_A 151 ----PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 193 (262)
T ss_dssp ----CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcc
Confidence 112368999999999999998865 4899999999998765
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=162.57 Aligned_cols=216 Identities=12% Similarity=0.028 Sum_probs=151.5
Q ss_pred ccCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCCCCCcc--ccccccCCCceEEEeccccccc----------
Q 013226 111 LQRKSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYFTGKKD--NLIHHFGNPRFELIRHDVVEPI---------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~~~~~~--~~~~~~~~~~v~~~~~D~~~~~---------- 176 (447)
.+++||+++||||+| +||+++++.|+++|++|++.+|+.....+ +........++.++.+|++++.
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIG 81 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 357899999999887 99999999999999999999997443221 1122234457889999998763
Q ss_pred --ccCCCEEEEeccCCCCCCc----cc-C---hHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCC
Q 013226 177 --LLEVDQIYHLACPASPVHY----KF-N---PVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~~~~----~~-~---~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e 243 (447)
+.++|++|||||....... .+ . ....+++|+.++..+.+++...- .+||++||....-
T Consensus 82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~--------- 152 (256)
T 4fs3_A 82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF--------- 152 (256)
T ss_dssp HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS---------
T ss_pred HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc---------
Confidence 3469999999997543221 11 1 23467889999988888876542 3899999987431
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
+......|+.||+..+.+.+.++.+ +||++.+|.||.|..|..... .-...+........|+.
T Consensus 153 -------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~--~~~~~~~~~~~~~~Pl~----- 218 (256)
T 4fs3_A 153 -------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGV--GGFNTILKEIKERAPLK----- 218 (256)
T ss_dssp -------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC--TTHHHHHHHHHHHSTTS-----
T ss_pred -------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhc--cCCHHHHHHHHhcCCCC-----
Confidence 2222378999999999999999876 489999999999877643211 11234444444433332
Q ss_pred CeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
-+...+|+|+++++++.+. .+| ++.+.+|
T Consensus 219 ----R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG 251 (256)
T 4fs3_A 219 ----RNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSG 251 (256)
T ss_dssp ----SCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ----CCcCHHHHHHHHHHHhCchhcCccCCEEEECcC
Confidence 1456899999999999754 245 5555443
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=164.03 Aligned_cols=198 Identities=10% Similarity=0.030 Sum_probs=141.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---ccc---cc--CCCceEEEeccccccc-------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIH---HF--GNPRFELIRHDVVEPI------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~---~~--~~~~v~~~~~D~~~~~------- 176 (447)
.+++|+++||||+|+||++++++|+++|++|++++|+....... +.. .. ...++.++.+|+.+..
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA 82 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 56889999999999999999999999999999999975432211 110 00 1346888999998763
Q ss_pred -----ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCC
Q 013226 177 -----LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQA 242 (447)
Q Consensus 177 -----~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~ 242 (447)
+.++|+||||||......... .....+++|+.|+.++++++.. .+. +||++||...+...
T Consensus 83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------ 156 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA------ 156 (274)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH------
T ss_pred HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC------
Confidence 236999999999865443332 2456889999999999998744 343 99999998754210
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecC
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
+......|+.||++.+.+++.++.++ |+++++|+||.+..... . ......
T Consensus 157 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~--------~----~~~~~~------- 209 (274)
T 3e03_A 157 --------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDA--------I----NMLPGV------- 209 (274)
T ss_dssp --------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------------------CC-------
T ss_pred --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccch--------h----hhcccc-------
Confidence 01223679999999999999998764 89999999985332211 0 111111
Q ss_pred CCeeEccccHHHHHHHHHHHHcCCC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~~ 344 (447)
....+...+|+|+++++++....
T Consensus 210 --~~~~~~~pedvA~~v~~l~s~~~ 232 (274)
T 3e03_A 210 --DAAACRRPEIMADAAHAVLTREA 232 (274)
T ss_dssp --CGGGSBCTHHHHHHHHHHHTSCC
T ss_pred --cccccCCHHHHHHHHHHHhCccc
Confidence 11236789999999999998653
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=161.98 Aligned_cols=209 Identities=14% Similarity=0.119 Sum_probs=142.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+++||++|||||+++||+++++.|+++|++|++++|...... .+..++.+|++++. +.+
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 78 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGL---------PEELFVEADLTTKEGCAIVAEATRQRLGG 78 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTS---------CTTTEEECCTTSHHHHHHHHHHHHHHTSS
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCC---------CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 679999999999999999999999999999999999643211 12235778887653 346
Q ss_pred CCEEEEeccCCCCC--Cccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 180 VDQIYHLACPASPV--HYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~--~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+|++|||||..... .+.+ +....+++|+.|+..+.+++. +.+. ++|++||....-.
T Consensus 79 iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~------------- 145 (261)
T 4h15_A 79 VDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLP------------- 145 (261)
T ss_dssp CSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-------------
T ss_pred CCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccC-------------
Confidence 99999999975432 2222 345689999999988887753 4454 9999999874311
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCcc----------CCCchHHHHHHHHHhCCCeE
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCI----------DDGRVVSNFVAQALRKEPLT 315 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~----------~~~~~~~~~~~~~~~~~~~~ 315 (447)
.+ .....|+.||++.+.+.+.++.+ +||++.+|.||.|..|.... ........++......-|+
T Consensus 146 -~~-~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl- 222 (261)
T 4h15_A 146 -LP-ESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPL- 222 (261)
T ss_dssp -CT-TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTT-
T ss_pred -CC-CccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCC-
Confidence 01 11367999999999999999876 48999999999987653100 0000001111112222111
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.-+...+|+|+++++++.... .| .+.+.+|
T Consensus 223 --------gR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG 256 (261)
T 4h15_A 223 --------GRPAKPEEVANLIAFLASDRAASITGAEYTIDGG 256 (261)
T ss_dssp --------SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --------CCCcCHHHHHHHHHHHhCchhcCccCcEEEECCc
Confidence 125678999999999997542 45 5555543
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.3e-19 Score=164.54 Aligned_cols=210 Identities=14% Similarity=0.093 Sum_probs=138.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-e--cCCCCCccccccccCCCceEEEeccccccc-------ccCCCEEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVV-D--NYFTGKKDNLIHHFGNPRFELIRHDVVEPI-------LLEVDQIY 184 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l-~--r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-------~~~~d~Vi 184 (447)
+|+++||||+|+||++++++|+++|++|+++ + |+.... +.....+ ...++.+.+..+.. +.++|+||
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~-~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~iD~lv 77 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAER-QRFESEN--PGTIALAEQKPERLVDATLQHGEAIDTIV 77 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH-HHHHHHS--TTEEECCCCCGGGHHHHHGGGSSCEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHH-HHHHHHh--CCCcccCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4789999999999999999999999999999 5 753321 1111111 12333333333222 34689999
Q ss_pred EeccCCCC---CCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 185 HLACPASP---VHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 185 h~Ag~~~~---~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
||||.... ....+ +....+++|+.|+.++++++. +.+. +||++||...+.. .
T Consensus 78 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~----------------~ 141 (244)
T 1zmo_A 78 SNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKP----------------L 141 (244)
T ss_dssp ECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC----------------C
T ss_pred ECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCC----------------C
Confidence 99997654 22222 245689999999999988774 4454 9999999876532 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchH-HHHHHHHHh-CCCeEEecCCCeeEccc
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVV-SNFVAQALR-KEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~i 327 (447)
.....|+.||++.+.+++.++.+ .|+++++|+||.+..+.... ...+. ......... ..++ ..+.
T Consensus 142 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-~~~~~~~~~~~~~~~~~~p~---------~r~~ 211 (244)
T 1zmo_A 142 AYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFP-TSDWENNPELRERVDRDVPL---------GRLG 211 (244)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBC-HHHHHHCHHHHHHHHHHCTT---------CSCB
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccc-cccccchHHHHHHHhcCCCC---------CCCc
Confidence 22368999999999999999876 48999999999988764200 00000 011111111 1111 1367
Q ss_pred cHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 328 FVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
..+|+|+++++++.... .| .+.+.++
T Consensus 212 ~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG 241 (244)
T 1zmo_A 212 RPDEMGALITFLASRRAAPIVGQFFAFTGG 241 (244)
T ss_dssp CHHHHHHHHHHHHTTTTGGGTTCEEEESTT
T ss_pred CHHHHHHHHHHHcCccccCccCCEEEeCCC
Confidence 89999999999998643 35 4555443
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-19 Score=166.16 Aligned_cols=196 Identities=20% Similarity=0.134 Sum_probs=138.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc--cccCCCceEEEeccc--cccc----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI--HHFGNPRFELIRHDV--VEPI---------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~D~--~~~~---------- 176 (447)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+... .......+.++..|+ .+..
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~ 89 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVE 89 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999996433221111 011223455555555 5432
Q ss_pred --ccCCCEEEEeccCCCC-CCcc----cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCC
Q 013226 177 --LLEVDQIYHLACPASP-VHYK----FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+.++|+||||||.... .... ++....+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------- 159 (247)
T 3i1j_A 90 HEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK---------- 159 (247)
T ss_dssp HHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS----------
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC----------
Confidence 2369999999997532 2222 2355689999999999999873 4444 999999987542
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh----hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDG 320 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (447)
+......|+.+|++.+.+++.++.+ .++++.+|+||.+..+. ........
T Consensus 160 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~------------~~~~~~~~-------- 213 (247)
T 3i1j_A 160 ------GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM------------RAQAYPDE-------- 213 (247)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH------------HHHHSTTS--------
T ss_pred ------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc------------chhccccc--------
Confidence 1223478999999999999999876 37899999998886531 11211111
Q ss_pred CeeEccccHHHHHHHHHHHHcCC
Q 013226 321 KQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 321 ~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
....+...+|+|+++++++...
T Consensus 214 -~~~~~~~p~dva~~~~~l~s~~ 235 (247)
T 3i1j_A 214 -NPLNNPAPEDIMPVYLYLMGPD 235 (247)
T ss_dssp -CGGGSCCGGGGTHHHHHHHSGG
T ss_pred -CccCCCCHHHHHHHHHHHhCch
Confidence 1124567899999999999754
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=166.01 Aligned_cols=213 Identities=14% Similarity=0.032 Sum_probs=142.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc--cCCCceEEEecccccc-c------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH--FGNPRFELIRHDVVEP-I------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~-~------------ 176 (447)
..++|+|+||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+.+. .
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999754322211111 1234689999999886 2
Q ss_pred ccCCCEEEEeccCCCCCC----------------------------------cccChHHHHHHHHHHHHHHHHHHHH---
Q 013226 177 LLEVDQIYHLACPASPVH----------------------------------YKFNPVKTIKTNVVGTLNMLGLAKR--- 219 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~----------------------------------~~~~~~~~~~~Nv~gt~~ll~aa~~--- 219 (447)
..++|+||||||+..... ........+++|+.|+.++++++..
T Consensus 89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~ 168 (311)
T 3o26_A 89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ 168 (311)
T ss_dssp HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence 136999999999763210 0112345799999999998888743
Q ss_pred -CCC-eEEEEeCccccCCCCCC-----------CC----------------CCCcCCCCCCCCCCChHHHHHHHHHHHHH
Q 013226 220 -VGA-RFLLTSTSEVYGDPLQH-----------PQ----------------AETYWGNVNPIGVRSCYDEGKRTAETLTM 270 (447)
Q Consensus 220 -~g~-r~v~~SS~~v~g~~~~~-----------~~----------------~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 270 (447)
.+. +||++||...+...... .. .+..............|+.||++.+.+++
T Consensus 169 ~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~ 248 (311)
T 3o26_A 169 LSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTR 248 (311)
T ss_dssp TSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHHH
Confidence 343 99999998743211000 00 00000000111234689999999999999
Q ss_pred HHHhhh-CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC---CC
Q 013226 271 DYHRGL-GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG 346 (447)
Q Consensus 271 ~~~~~~-~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g 346 (447)
.++.++ ++++.+|+||.|.++-.. . ......++.++.++.++..+. .+
T Consensus 249 ~la~e~~~i~v~~v~PG~v~T~~~~----------------~------------~~~~~~~~~a~~~~~~~~~~~~~~~g 300 (311)
T 3o26_A 249 VLANKIPKFQVNCVCPGLVKTEMNY----------------G------------IGNYTAEEGAEHVVRIALFPDDGPSG 300 (311)
T ss_dssp HHHHHCTTSEEEEECCCSBCSGGGT----------------T------------CCSBCHHHHHHHHHHHHTCCSSCCCS
T ss_pred HHHhhcCCceEEEecCCceecCCcC----------------C------------CCCCCHHHHHHHHHHHHhCCCCCCCc
Confidence 999875 799999999999865310 0 012577899999998877543 34
Q ss_pred cEEecC
Q 013226 347 PFNLGN 352 (447)
Q Consensus 347 ~~~i~~ 352 (447)
.|..++
T Consensus 301 ~~~~~s 306 (311)
T 3o26_A 301 FFYDCS 306 (311)
T ss_dssp CEETC-
T ss_pred eEeccc
Confidence 666554
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=174.99 Aligned_cols=210 Identities=13% Similarity=-0.012 Sum_probs=145.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
..+++++++||||+|+||.+++++|+++|++|++++|+.. .+.+........+.++.+|+++.. +.
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~--~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g 286 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA--AEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHG 286 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGG--HHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHST
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCcc--HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcC
Confidence 4468899999999999999999999999999999988532 122211111224578899997763 12
Q ss_pred C-CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----CC-eEEEEeCcccc-CCCCCCCCCCCcCC
Q 013226 179 E-VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVY-GDPLQHPQAETYWG 247 (447)
Q Consensus 179 ~-~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g~-r~v~~SS~~v~-g~~~~~~~~e~~~~ 247 (447)
+ +|+||||||+........ .....+++|+.|+.++.+++... +. +||++||...+ +.+
T Consensus 287 ~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~----------- 355 (454)
T 3u0b_A 287 GKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNR----------- 355 (454)
T ss_dssp TCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCT-----------
T ss_pred CCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCC-----------
Confidence 4 999999999876544332 24568999999999999998775 33 99999998743 332
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHH-HhCCCeEEecCCCee
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQA-LRKEPLTVYGDGKQT 323 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 323 (447)
....|+.+|+..+.+++.++.+ .|+++++|+||.+.++..... ....... .... ..
T Consensus 356 ------g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-----~~~~~~~~~~~~---------~l 415 (454)
T 3u0b_A 356 ------GQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAI-----PLATREVGRRLN---------SL 415 (454)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC---------------CHHHHHSB---------TT
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhc-----chhhHHHHHhhc---------cc
Confidence 2378999999999999988765 489999999999987642110 0000000 1110 11
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
..+...+|+|+++++++... ..| ++++.++
T Consensus 416 ~r~g~pedvA~~v~fL~s~~a~~itG~~i~vdGG 449 (454)
T 3u0b_A 416 FQGGQPVDVAELIAYFASPASNAVTGNTIRVCGQ 449 (454)
T ss_dssp SSCBCHHHHHHHHHHHHCGGGTTCCSCEEEESSS
T ss_pred cCCCCHHHHHHHHHHHhCCccCCCCCcEEEECCc
Confidence 22467899999999998754 335 6666554
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=166.96 Aligned_cols=215 Identities=19% Similarity=0.116 Sum_probs=141.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--------CCCceEEEeccccccc-----c----
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--------GNPRFELIRHDVVEPI-----L---- 177 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--------~~~~v~~~~~D~~~~~-----~---- 177 (447)
+|+|+||||+|+||++++++|+++|++|++++|+..... ...... ...++.++.+|+++.. +
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLK-TQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGG-GTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHH-HHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence 678999999999999999999999999988887533221 111110 1246889999998753 1
Q ss_pred -cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 -LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 -~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|+||||||......... +....+++|+.|+.++++++ ++.+. +||++||...+..
T Consensus 81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~------------ 148 (327)
T 1jtv_A 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMG------------ 148 (327)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSC------------
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccC------------
Confidence 24999999999754332222 34568999999999999985 34455 9999999875421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCch----------HHHHHHHHHhCCCe
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRV----------VSNFVAQALRKEPL 314 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~----------~~~~~~~~~~~~~~ 314 (447)
......|+.||++.+.+++.++.+ .|+++++|+||.|.++......... ...++.........
T Consensus 149 ----~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (327)
T 1jtv_A 149 ----LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQ 224 (327)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred ----CCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHHHHHHHH
Confidence 112368999999999999999875 5899999999999876421100000 00000000000000
Q ss_pred EEecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEecC
Q 013226 315 TVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGN 352 (447)
Q Consensus 315 ~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~~ 352 (447)
+ . .+-.+.++|+|+++++++..+.....++.+
T Consensus 225 ~-~-----~~~~~~pedvA~~i~~l~~~~~~~~~~~tg 256 (327)
T 1jtv_A 225 V-F-----REAAQNPEEVAEVFLTALRAPKPTLRYFTT 256 (327)
T ss_dssp H-H-----HHHCBCHHHHHHHHHHHHHCSSCCSEEESC
T ss_pred h-h-----hhcCCCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 0 0 011258899999999999876544444443
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=159.85 Aligned_cols=214 Identities=12% Similarity=0.025 Sum_probs=141.1
Q ss_pred cCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCC----------CCCccccccccCCC----ceEEEec-----
Q 013226 112 QRKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYF----------TGKKDNLIHHFGNP----RFELIRH----- 170 (447)
Q Consensus 112 ~~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~----------~~~~~~~~~~~~~~----~v~~~~~----- 170 (447)
.+++|+++||||+ |+||++++++|+++|++|++++|+. ....+... .+... .......
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSR-VLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGG-BCTTSSBCCEEEEEEECTTCC
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhh-hhccccccccccccccceecc
Confidence 4678999999999 9999999999999999999998531 11111111 11100 0122222
Q ss_pred ---cc----cc--------c------------cccCCCEEEEeccCCC--CCCcc----cChHHHHHHHHHHHHHHHHHH
Q 013226 171 ---DV----VE--------P------------ILLEVDQIYHLACPAS--PVHYK----FNPVKTIKTNVVGTLNMLGLA 217 (447)
Q Consensus 171 ---D~----~~--------~------------~~~~~d~Vih~Ag~~~--~~~~~----~~~~~~~~~Nv~gt~~ll~aa 217 (447)
|+ .+ + .+.++|+||||||... ..... .+....+++|+.|+.++++++
T Consensus 84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 163 (297)
T 1d7o_A 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence 11 11 1 1236899999998642 12211 224568999999999999999
Q ss_pred HHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhh----hCCcEEEEeecccc
Q 013226 218 KRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRG----LGIEARIARIFNTY 289 (447)
Q Consensus 218 ~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i~ 289 (447)
... +.+||++||...+.. .... ..|+.||++.+.+++.++.+ .|+++++|+||.+.
T Consensus 164 ~~~m~~~g~iv~isS~~~~~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~ 227 (297)
T 1d7o_A 164 LPIMNPGGASISLTYIASERI----------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLG 227 (297)
T ss_dssp GGGEEEEEEEEEEECGGGTSC----------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCB
T ss_pred HHHhccCceEEEEeccccccC----------------CCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccc
Confidence 764 248999999875421 1112 47999999999999998765 58999999999999
Q ss_pred CCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 290 GPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 290 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+|.... ......+........++ ..+..++|+|+++++++... ..| .+++.++
T Consensus 228 T~~~~~--~~~~~~~~~~~~~~~p~---------~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG 284 (297)
T 1d7o_A 228 SRAAKA--IGFIDTMIEYSYNNAPI---------QKTLTADEVGNAAAFLVSPLASAITGATIYVDNG 284 (297)
T ss_dssp CCCSSC--CSHHHHHHHHHHHHSSS---------CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cchhhh--ccccHHHHHHhhccCCC---------CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 986421 11223333333322221 12568999999999998753 235 6777665
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=161.80 Aligned_cols=205 Identities=11% Similarity=0.031 Sum_probs=135.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc-------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI-------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~-------------~ 177 (447)
+++|+++||||+|+||++++++|+++|++|++++|+..... .....+ ...++.++.+|+.+.. +
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 81 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLR-VVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ 81 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999998643211 111111 1236788999997752 3
Q ss_pred cCCCEEEEecc--CC-----CCCCc-c---cChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCC
Q 013226 178 LEVDQIYHLAC--PA-----SPVHY-K---FNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQ 241 (447)
Q Consensus 178 ~~~d~Vih~Ag--~~-----~~~~~-~---~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~ 241 (447)
.++|+|||||| .. ..... + ......+++|+.++.++.+++. +.+. +||++||...+..
T Consensus 82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------ 155 (260)
T 2qq5_A 82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY------ 155 (260)
T ss_dssp TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC------
T ss_pred CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC------
Confidence 46899999995 21 11111 1 2245688899999887777654 4444 9999999876531
Q ss_pred CCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEec
Q 013226 242 AETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 242 ~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
. +...|+.||++.+.+++.++.+ .|+++++|+||.+.++.... ..... ............
T Consensus 156 --------~---~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~--~~~~~~~~~~~~ 218 (260)
T 2qq5_A 156 --------M---FNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKE----HMAKE--EVLQDPVLKQFK 218 (260)
T ss_dssp --------C---SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC-------------------------
T ss_pred --------C---CCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHH----hhccc--cccchhHHHHHH
Confidence 1 1368999999999999999865 48999999999998874211 00000 000000000000
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
. ....+...+|+|+++++++..+
T Consensus 219 ~--~~~~~~~pe~va~~v~~l~s~~ 241 (260)
T 2qq5_A 219 S--AFSSAETTELSGKCVVALATDP 241 (260)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCT
T ss_pred h--hhccCCCHHHHHHHHHHHhcCc
Confidence 0 0112468899999999999865
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=161.47 Aligned_cols=255 Identities=13% Similarity=0.069 Sum_probs=158.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCC----C-c---cccccccCCCceEEEeccccccc------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG----K-K---DNLIHHFGNPRFELIRHDVVEPI------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~----~-~---~~~~~~~~~~~v~~~~~D~~~~~------ 176 (447)
..+++|+++||||+|+||++++++|+++|++|+++++.... + . +.....+..... ....|+.+..
T Consensus 5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~~~~~~~~~ 83 (319)
T 1gz6_A 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLV 83 (319)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCCHHHHHHHH
Confidence 35688999999999999999999999999999998764210 1 1 111111100000 1123443331
Q ss_pred ------ccCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCcc-ccCCCCCCC
Q 013226 177 ------LLEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSE-VYGDPLQHP 240 (447)
Q Consensus 177 ------~~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~-v~g~~~~~~ 240 (447)
+.++|+||||||+.....+. ...+..+++|+.|+.++++++ ++.+. +||++||.. .++.+
T Consensus 84 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~---- 159 (319)
T 1gz6_A 84 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF---- 159 (319)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC----
Confidence 34699999999976543222 235568999999999988886 34454 999999975 55432
Q ss_pred CCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEe
Q 013226 241 QAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY 317 (447)
Q Consensus 241 ~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (447)
....|+.||++.+.+++.++.+ .|+++++|+||.+ .+.. .....
T Consensus 160 -------------~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~----~~~~~--------------- 206 (319)
T 1gz6_A 160 -------------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMT----ETVMP--------------- 206 (319)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTT----GGGSC---------------
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccc----cccCC---------------
Confidence 1368999999999999999876 4899999999986 3211 00000
Q ss_pred cCCCeeEccccHHHHHHHHHHHHcCCC--CC-cEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHH
Q 013226 318 GDGKQTRSFQFVSDLVEGLIRLMEGDH--VG-PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITK 394 (447)
Q Consensus 318 ~~~~~~~~~i~v~D~a~ai~~~l~~~~--~g-~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k 394 (447)
.....+++++|+|.++++++..+. .| .|++.++..... .+...............|.+.
T Consensus 207 ---~~~~~~~~p~dvA~~~~~l~s~~~~~tG~~~~v~GG~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ 268 (319)
T 1gz6_A 207 ---EDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKL---------------RWERTLGAIVRKRNQPMTPEA 268 (319)
T ss_dssp ---HHHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETTEEEEE---------------EEEECCCEECCBTTBCCCHHH
T ss_pred ---hhhhccCCHHHHHHHHHHHhCchhhcCCCEEEECCCeEEEE---------------eeeeccceeccCCCCCCCHHH
Confidence 011234678999999999987642 34 555655422110 010000000000112234444
Q ss_pred HHH-------HcCCCccCCHHHHHHHHHHHHHHH
Q 013226 395 AKQ-------LLGWEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 395 ~~~-------~lG~~p~~s~~e~l~~~~~~~~~~ 421 (447)
+++ ..|+....++.+.+..+++...+.
T Consensus 269 ~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (319)
T 1gz6_A 269 VRDNWVKICDFSNASKPKSIQESTGGIIEVLHKI 302 (319)
T ss_dssp HHHTHHHHTCCTTCBCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCchHHHHHHHHHHHhhc
Confidence 333 246665568899999988866554
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-18 Score=162.24 Aligned_cols=216 Identities=11% Similarity=0.068 Sum_probs=146.1
Q ss_pred cCCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGG--AGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGa--sG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~ 177 (447)
.+++|+++|||| +|+||++++++|+++|++|++++|+.....+.+.... ..++.++.+|+.++. +
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAI 82 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence 357899999999 9999999999999999999999986432112222222 235778889997753 1
Q ss_pred c---CCCEEEEeccCCCC-----CCcc----cChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCC
Q 013226 178 L---EVDQIYHLACPASP-----VHYK----FNPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQA 242 (447)
Q Consensus 178 ~---~~d~Vih~Ag~~~~-----~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~ 242 (447)
. ++|+||||||.... .... ++....+++|+.|+.++++++.+. +.+||++||...++.
T Consensus 83 g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~~------- 155 (269)
T 2h7i_A 83 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAM------- 155 (269)
T ss_dssp CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCC-------
T ss_pred CCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCcccccc-------
Confidence 2 79999999997641 1221 124567899999999999998764 238999999764322
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCcc-----CCCch---HHHHHHHHHhC
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCI-----DDGRV---VSNFVAQALRK 311 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~-----~~~~~---~~~~~~~~~~~ 311 (447)
.....|+.||++.+.+++.++.++ |+++++|+||.+..+.... ..... ...+.......
T Consensus 156 ----------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (269)
T 2h7i_A 156 ----------PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQR 225 (269)
T ss_dssp ----------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhcc
Confidence 123689999999999999998764 8999999999987652100 00000 00011111111
Q ss_pred CCeEEecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 312 EPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 312 ~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.++. +.+...+|+|+++++++.... .| .+.+.++
T Consensus 226 ~p~~--------rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 263 (269)
T 2h7i_A 226 APIG--------WNMKDATPVAKTVCALLSDWLPATTGDIIYADGG 263 (269)
T ss_dssp CTTC--------CCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTT
T ss_pred CCcc--------cCCCCHHHHHHHHHHHhCchhccCcceEEEecCC
Confidence 1110 125677999999999997643 35 5566544
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-19 Score=168.32 Aligned_cols=205 Identities=11% Similarity=-0.006 Sum_probs=139.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHh---CCCeEEEEecCCCCCcccccccc----CCCceEEEecccccccc-------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMD---RGDSVIVVDNYFTGKKDNLIHHF----GNPRFELIRHDVVEPIL------- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~---~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~------- 177 (447)
++++|+++||||+|+||++++++|++ +|++|++++|+.+... .....+ ...++.++.+|++++..
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~-~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLR-QLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHH-HHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHH-HHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 35788999999999999999999999 8999999998643221 111111 13468889999977621
Q ss_pred -------cCCC--EEEEeccCCCC--CCc-----ccChHHHHHHHHHHHHHHHHHHHHC------CC-eEEEEeCccccC
Q 013226 178 -------LEVD--QIYHLACPASP--VHY-----KFNPVKTIKTNVVGTLNMLGLAKRV------GA-RFLLTSTSEVYG 234 (447)
Q Consensus 178 -------~~~d--~Vih~Ag~~~~--~~~-----~~~~~~~~~~Nv~gt~~ll~aa~~~------g~-r~v~~SS~~v~g 234 (447)
.++| +||||||.... ... ..+....+++|+.|+.++++++... +. +||++||...+.
T Consensus 82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~ 161 (259)
T 1oaa_A 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence 2478 99999997532 111 1235568999999999999998653 22 799999988652
Q ss_pred CCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh-CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCC
Q 013226 235 DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL-GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP 313 (447)
Q Consensus 235 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~ 313 (447)
+......|+.||++.+.+++.++.++ ++++++|+||.+-.+. ...+... .....
T Consensus 162 ----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~--------~~~~~~~-~~~~~ 216 (259)
T 1oaa_A 162 ----------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDM--------QQLARET-SKDPE 216 (259)
T ss_dssp ----------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHH--------HHHHHHH-CSCHH
T ss_pred ----------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcch--------HHHHhhc-cCChh
Confidence 12234789999999999999998876 4999999998876542 1111100 00000
Q ss_pred -eEEecCCCeeEccccHHHHHHHHHHHHcC
Q 013226 314 -LTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 314 -~~~~~~~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
...+........+.+++|+|+++++++.+
T Consensus 217 ~~~~~~~~~p~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 217 LRSKLQKLKSDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HHHHHHHHHHTTCSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCcCCHHHHHHHHHHHHhh
Confidence 00000000012367899999999999874
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-17 Score=165.98 Aligned_cols=214 Identities=19% Similarity=0.234 Sum_probs=149.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEecCCCCCc--ccccccc--CCCceEEEeccccccc-----c-----
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFTGKK--DNLIHHF--GNPRFELIRHDVVEPI-----L----- 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~-V~~l~r~~~~~~--~~~~~~~--~~~~v~~~~~D~~~~~-----~----- 177 (447)
..+++||||||+|+||.+++++|+++|++ |++++|+..... +++...+ ...++.++.+|+.+.. +
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~ 303 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD 303 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 36789999999999999999999999995 889998653221 1111111 1346889999998763 1
Q ss_pred -cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCC
Q 013226 178 -LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 178 -~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~ 250 (447)
..+|+||||||......... .....+++|+.|+.++.+++++.+. +||++||.+ ++|.+.
T Consensus 304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~g------------- 370 (486)
T 2fr1_A 304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPG------------- 370 (486)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTT-------------
T ss_pred cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCCC-------------
Confidence 23699999999865433222 2445788999999999999988876 999999976 555432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
...|+.+|...+.+.+++. ..|+++++|+||.++++++.. .... .... .....+++.+
T Consensus 371 ----~~~Yaaaka~l~~la~~~~-~~gi~v~~i~pG~~~~~gm~~-------~~~~--------~~~~--~~g~~~i~~e 428 (486)
T 2fr1_A 371 ----LGGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGMAE-------GPVA--------DRFR--RHGVIEMPPE 428 (486)
T ss_dssp ----CTTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC---------------------------CT--TTTEECBCHH
T ss_pred ----CHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCeeCCCcccc-------hhHH--------HHHH--hcCCCCCCHH
Confidence 2679999999999987765 459999999999988765311 0000 0000 1124579999
Q ss_pred HHHHHHHHHHcCCCCCcEEecCCCccCHHHHHHHH
Q 013226 331 DLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVV 365 (447)
Q Consensus 331 D~a~ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i 365 (447)
|+++++..+++++.... .+. .+.|..+...+
T Consensus 429 ~~a~~l~~~l~~~~~~~-~v~---~~d~~~~~~~~ 459 (486)
T 2fr1_A 429 TACRALQNALDRAEVCP-IVI---DVRWDRFLLAY 459 (486)
T ss_dssp HHHHHHHHHHHTTCSSC-EEC---EECHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeE-EEE---eCCHHHHhhhh
Confidence 99999999998765533 222 36677665543
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-16 Score=160.79 Aligned_cols=215 Identities=17% Similarity=0.179 Sum_probs=151.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc--ccccccc--CCCceEEEeccccccc-----c--cCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK--DNLIHHF--GNPRFELIRHDVVEPI-----L--LEVD 181 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~--~~~~~~~--~~~~v~~~~~D~~~~~-----~--~~~d 181 (447)
.+++||||||+|+||.+++++|+++|+ +|++++|+..... +++...+ ...++.++.+|+.+.. + ..+|
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld 337 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN 337 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence 578999999999999999999999999 5888888653211 1111111 1346889999998863 2 3499
Q ss_pred EEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC-CC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCCCCCC
Q 013226 182 QIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSE-VYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~-g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
+||||||+........ .....+++|+.|+.++.+++... +. +||++||.. ++|.+.
T Consensus 338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~g----------------- 400 (511)
T 2z5l_A 338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNAG----------------- 400 (511)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCTT-----------------
T ss_pred EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCCC-----------------
Confidence 9999999865443322 24457899999999999998776 55 999999986 555422
Q ss_pred CChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHH
Q 013226 255 RSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 334 (447)
...|+.+|...+.+++.+. ..|+++++|+||.+.+.++.. .... ..... ....+++.+|+++
T Consensus 401 ~~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tgm~~---~~~~---~~~~~-----------~g~~~l~~e~~a~ 462 (511)
T 2z5l_A 401 QGAYAAANAALDALAERRR-AAGLPATSVAWGLWGGGGMAA---GAGE---ESLSR-----------RGLRAMDPDAAVD 462 (511)
T ss_dssp BHHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTTCCC---CHHH---HHHHH-----------HTBCCBCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccCCcccc---cccH---HHHHh-----------cCCCCCCHHHHHH
Confidence 2789999999999998764 569999999999874433321 1111 11111 1124689999999
Q ss_pred HHHHHHcCCCCCcEEecCCCccCHHHHHHHHHH
Q 013226 335 GLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQE 367 (447)
Q Consensus 335 ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~ 367 (447)
++..++.++... +.+. .+.|..+...+..
T Consensus 463 ~l~~al~~~~~~-v~v~---~~d~~~~~~~~~~ 491 (511)
T 2z5l_A 463 ALLGAMGRNDVC-VTVV---DVDWERFAPATNA 491 (511)
T ss_dssp HHHHHHHHTCSE-EEEC---CBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCE-EEEE---eCCHHHHHhhhcc
Confidence 999999876543 2232 4667777665543
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=151.11 Aligned_cols=221 Identities=11% Similarity=0.006 Sum_probs=120.5
Q ss_pred cCCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEecCC----------CCCccc-----------cccccCCC-----
Q 013226 112 QRKSLRILVTGG--AGFVGSHLVDRLMDRGDSVIVVDNYF----------TGKKDN-----------LIHHFGNP----- 163 (447)
Q Consensus 112 ~~~~~~ilVtGa--sG~IG~~l~~~L~~~G~~V~~l~r~~----------~~~~~~-----------~~~~~~~~----- 163 (447)
.+++|+++|||| +|+||+++++.|+++|++|++++|+. ....+. ....+...
T Consensus 6 ~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (319)
T 2ptg_A 6 DLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV 85 (319)
T ss_dssp CCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------C
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence 467899999999 89999999999999999999998631 000000 00010000
Q ss_pred ceEEEecc------------ccc-------------cc-------ccCCCEEEEeccCCC--CCCcc-c---ChHHHHHH
Q 013226 164 RFELIRHD------------VVE-------------PI-------LLEVDQIYHLACPAS--PVHYK-F---NPVKTIKT 205 (447)
Q Consensus 164 ~v~~~~~D------------~~~-------------~~-------~~~~d~Vih~Ag~~~--~~~~~-~---~~~~~~~~ 205 (447)
...++..| +++ .. +.++|+||||||... ..... . .....+++
T Consensus 86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~v 165 (319)
T 2ptg_A 86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSS 165 (319)
T ss_dssp CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHH
T ss_pred ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhH
Confidence 01333222 222 11 236899999999642 12211 1 24568999
Q ss_pred HHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhh----hC
Q 013226 206 NVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRG----LG 277 (447)
Q Consensus 206 Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~~ 277 (447)
|+.|+.++++++... +.+||++||...+.. .... ..|+.||++.+.+++.++.+ .|
T Consensus 166 N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~~g 229 (319)
T 2ptg_A 166 SSYSFVSLLQHFLPLMKEGGSALALSYIASEKV----------------IPGYGGGMSSAKAALESDCRTLAFEAGRARA 229 (319)
T ss_dssp HTHHHHHHHHHHGGGEEEEEEEEEEEECC----------------------------------THHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhcCceEEEEeccccccc----------------cCccchhhHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999998765 248999999874321 1112 47999999999999998765 58
Q ss_pred CcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 278 IEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 278 i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+++++|+||.|..+............+...... .+.......-+...+|+|+++++++... ..| .+.+.++
T Consensus 230 Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG 304 (319)
T 2ptg_A 230 VRVNCISAGPLKSRAASAIGKAGDKTFIDLAID-----YSEANAPLQKELESDDVGRAALFLLSPLARAVTGATLYVDNG 304 (319)
T ss_dssp CEEEEEEECCCC------------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred eeEEEEeeCCccChhhhhcccccchhhHHHHHH-----HHhccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence 999999999998764210000000000000000 0000001123678999999999999753 345 5555544
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.2e-16 Score=148.92 Aligned_cols=217 Identities=12% Similarity=0.044 Sum_probs=136.0
Q ss_pred cCCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEecCCC----------CCccccccccCCC---ceEEEe-------
Q 013226 112 QRKSLRILVTGG--AGFVGSHLVDRLMDRGDSVIVVDNYFT----------GKKDNLIHHFGNP---RFELIR------- 169 (447)
Q Consensus 112 ~~~~~~ilVtGa--sG~IG~~l~~~L~~~G~~V~~l~r~~~----------~~~~~~~~~~~~~---~v~~~~------- 169 (447)
.+++|+++|||| +|+||++++++|+++|++|++++|+.. ...+......... .+.++.
T Consensus 6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (315)
T 2o2s_A 6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK 85 (315)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS
T ss_pred cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccc
Confidence 467899999999 899999999999999999999986420 0111111000000 012222
Q ss_pred -----ccccc--------c------------cccCCCEEEEeccCCC--CCCcc----cChHHHHHHHHHHHHHHHHHHH
Q 013226 170 -----HDVVE--------P------------ILLEVDQIYHLACPAS--PVHYK----FNPVKTIKTNVVGTLNMLGLAK 218 (447)
Q Consensus 170 -----~D~~~--------~------------~~~~~d~Vih~Ag~~~--~~~~~----~~~~~~~~~Nv~gt~~ll~aa~ 218 (447)
+|+.+ . .+.++|+||||||... ..... .+....+++|+.|+.++++++.
T Consensus 86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 165 (315)
T 2o2s_A 86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFG 165 (315)
T ss_dssp TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 22222 1 1236999999999642 12211 1245689999999999999986
Q ss_pred HC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC-ChHHHHHHHHHHHHHHHHhh----hCCcEEEEeeccccC
Q 013226 219 RV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRG----LGIEARIARIFNTYG 290 (447)
Q Consensus 219 ~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i~G 290 (447)
.. +.+||++||...+.. .... ..|+.||++.+.+++.++.+ .|+++++|+||.|..
T Consensus 166 ~~m~~~g~Iv~isS~~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T 229 (315)
T 2o2s_A 166 PIMNEGGSAVTLSYLAAERV----------------VPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKS 229 (315)
T ss_dssp TTEEEEEEEEEEEEGGGTSC----------------CTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCC
T ss_pred HHHhcCCEEEEEeccccccc----------------CCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccc
Confidence 64 248999999875421 1111 47999999999999998765 589999999999876
Q ss_pred CCCcc----CCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 291 PRMCI----DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 291 p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+.... ....+...+........++ .-+...+|+|+++++++... ..| .+.+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 291 (315)
T 2o2s_A 230 RAASAIGKSGEKSFIDYAIDYSYNNAPL---------RRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNG 291 (315)
T ss_dssp HHHHHTTCSSSSCHHHHHHHHHHHHSSS---------CCCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred hhhhhccccccchhHHHHHHHHhccCCC---------CCCCCHHHHHHHHHHHhCchhccCcCCEEEECCC
Confidence 42110 0011111111111111111 12568899999999998753 345 4555443
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-17 Score=158.46 Aligned_cols=169 Identities=12% Similarity=0.059 Sum_probs=118.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEecCCC-CCcc----ccccccCCCceEEEecccccccccCCCE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-------SVIVVDNYFT-GKKD----NLIHHFGNPRFELIRHDVVEPILLEVDQ 182 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-------~V~~l~r~~~-~~~~----~~~~~~~~~~v~~~~~D~~~~~~~~~d~ 182 (447)
.|+|+||||+||||++++..|+++|+ +|+++++... .... ++.+..-....++...+....++.++|+
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~ 83 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCE
Confidence 46899999999999999999999996 8999987531 0000 1111000001233332333456788999
Q ss_pred EEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C--eEEEEeCcc-ccCCCCCCCCCCCcCCCCCCCCCCChH
Q 013226 183 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTSTSE-VYGDPLQHPQAETYWGNVNPIGVRSCY 258 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~--r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~Y 258 (447)
|||+||..... ..+..+.++.|+.++.++++++++++ . +++++|+.. +.. ++.++. .....+.+.|
T Consensus 84 Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~---~~~~~p~~~y 153 (327)
T 1y7t_A 84 ALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKN---APGLNPRNFT 153 (327)
T ss_dssp EEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHT---CTTSCGGGEE
T ss_pred EEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHH---cCCCChhhee
Confidence 99999975422 34577899999999999999999875 3 777777643 111 011110 0123345679
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCC
Q 013226 259 DEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRM 293 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~ 293 (447)
+.+|...|++...+++.+|+++.++|+++||||+.
T Consensus 154 g~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 154 AMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp ECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred ccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 99999999999999998999999999999999874
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=154.18 Aligned_cols=198 Identities=17% Similarity=0.200 Sum_probs=141.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc--ccccccc--CCCceEEEecccccccc-----------
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK--DNLIHHF--GNPRFELIRHDVVEPIL----------- 177 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~--~~~~~~~--~~~~v~~~~~D~~~~~~----------- 177 (447)
.++++|||||+|+||.+++++|+++|+ +|+++.|+..... +++...+ ...++.++.+|+.+...
T Consensus 238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~ 317 (496)
T 3mje_A 238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED 317 (496)
T ss_dssp CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 348999999999999999999999999 7788888633221 1111111 23478999999987631
Q ss_pred cCCCEEEEeccCC-CCCCccc----ChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCC
Q 013226 178 LEVDQIYHLACPA-SPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 178 ~~~d~Vih~Ag~~-~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~ 250 (447)
..+|+||||||+. ....... .....+++|+.|+.++.+++...+. +||++||.+ ++|.+.
T Consensus 318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~~g------------- 384 (496)
T 3mje_A 318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGSGG------------- 384 (496)
T ss_dssp SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTCTT-------------
T ss_pred CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCCCC-------------
Confidence 2489999999986 3332222 2456899999999999999988876 999999977 544322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
...|+.+|...+.+.+++. ..|+++++|.||.+.++++.... .....+.+. . ...+..+
T Consensus 385 ----~~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~gm~~~~-----~~~~~l~~~-g----------~~~l~pe 443 (496)
T 3mje_A 385 ----QPGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVGMATDP-----EVHDRLVRQ-G----------VLAMEPE 443 (496)
T ss_dssp ----CHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSCC-----------CHHHHHT-T----------EEEECHH
T ss_pred ----cHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCccccCh-----HHHHHHHhc-C----------CCCCCHH
Confidence 2789999999999988764 46999999999988876653210 111111111 1 1246788
Q ss_pred HHHHHHHHHHcCCCC
Q 013226 331 DLVEGLIRLMEGDHV 345 (447)
Q Consensus 331 D~a~ai~~~l~~~~~ 345 (447)
+.++++..++..+..
T Consensus 444 ~~~~~l~~~l~~~~~ 458 (496)
T 3mje_A 444 HALGALDQMLENDDT 458 (496)
T ss_dssp HHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCCc
Confidence 999999999987654
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-15 Score=144.60 Aligned_cols=162 Identities=9% Similarity=-0.029 Sum_probs=114.7
Q ss_pred CCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCC---------CC---Ccccccc-ccCCCceEEEecccccc--c
Q 013226 114 KSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYF---------TG---KKDNLIH-HFGNPRFELIRHDVVEP--I 176 (447)
Q Consensus 114 ~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~---------~~---~~~~~~~-~~~~~~v~~~~~D~~~~--~ 176 (447)
++|+++||||++ +||.+++++|+++|++|++.+++. .. ....... ......+.++.+|+.+. .
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 368899999875 999999999999999999777543 11 1111110 11123466777777554 2
Q ss_pred ------------------------------ccCCCEEEEeccCCC--CCCccc----ChHHHHHHHHHHHHHHHHHHHHC
Q 013226 177 ------------------------------LLEVDQIYHLACPAS--PVHYKF----NPVKTIKTNVVGTLNMLGLAKRV 220 (447)
Q Consensus 177 ------------------------------~~~~d~Vih~Ag~~~--~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~ 220 (447)
+.++|++|||||+.. ...... .....+++|+.|+..+++++...
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 135899999999642 222221 24568999999999999998664
Q ss_pred C---CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCC-hHHHHHHHHHHHHHHHHhh----hCCcEEEEeeccccCC
Q 013226 221 G---ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRS-CYDEGKRTAETLTMDYHRG----LGIEARIARIFNTYGP 291 (447)
Q Consensus 221 g---~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i~Gp 291 (447)
- .+||++||...+.. ..... .|+.||++.+.+++.++.+ .|+++.+|.||.|..+
T Consensus 161 m~~~g~Iv~isS~~~~~~----------------~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 161 MKPQSSIISLTYHASQKV----------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEEEECGGGTSC----------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HhhCCeEEEEeCccccCC----------------CCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 2 38999999874321 11123 7999999999999998754 5899999999998764
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-16 Score=164.80 Aligned_cols=202 Identities=15% Similarity=0.043 Sum_probs=127.6
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC--------CCccccccccCCCceEEEecccccc------
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT--------GKKDNLIHHFGNPRFELIRHDVVEP------ 175 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~--------~~~~~~~~~~~~~~v~~~~~D~~~~------ 175 (447)
..++++|+++||||+|+||++++++|+++|++|++++|... ...+.....+...... ..+|+.+.
T Consensus 14 ~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~D~~d~~~~~~~ 92 (613)
T 3oml_A 14 KLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGE-AVADYNSVIDGAKV 92 (613)
T ss_dssp -CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCC-EEECCCCGGGHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCe-EEEEeCCHHHHHHH
Confidence 35689999999999999999999999999999999987211 1111111111100111 11344332
Q ss_pred ------cccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCcc-ccCCCCCC
Q 013226 176 ------ILLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSE-VYGDPLQH 239 (447)
Q Consensus 176 ------~~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~-v~g~~~~~ 239 (447)
.+.++|+||||||+.....+.. +....+++|+.|+.++++++ ++.+. +||++||.+ .++.+
T Consensus 93 ~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~--- 169 (613)
T 3oml_A 93 IETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNF--- 169 (613)
T ss_dssp HC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCCT---
T ss_pred HHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCC---
Confidence 1235999999999875543322 35568999999999999887 44554 999999977 44332
Q ss_pred CCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEE
Q 013226 240 PQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTV 316 (447)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (447)
....|+.||++.+.+++.++.+. ||++.+|.||.+- +.. .+. .
T Consensus 170 --------------~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~----------------~~~-~-- 215 (613)
T 3oml_A 170 --------------GQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMT----------------EGI-L-- 215 (613)
T ss_dssp --------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------CCC-C--
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhh----------------hhc-c--
Confidence 23789999999999999998764 8999999997531 110 000 0
Q ss_pred ecCCCeeEccccHHHHHHHHHHHHcCCC--CC-cEEecC
Q 013226 317 YGDGKQTRSFQFVSDLVEGLIRLMEGDH--VG-PFNLGN 352 (447)
Q Consensus 317 ~~~~~~~~~~i~v~D~a~ai~~~l~~~~--~g-~~~i~~ 352 (447)
.......+..+|+|.++++++.... .| .+++.+
T Consensus 216 ---~~~~~~~~~pedvA~~v~~L~s~~~~~tG~~i~vdG 251 (613)
T 3oml_A 216 ---PDILFNELKPKLIAPVVAYLCHESCEDNGSYIESAA 251 (613)
T ss_dssp ---CHHHHTTCCGGGTHHHHHHTTSTTCCCCSCEEEEET
T ss_pred ---chhhhhcCCHHHHHHHHHHhcCCCcCCCceEEEECC
Confidence 0011234578999999999987652 34 455543
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=154.02 Aligned_cols=214 Identities=11% Similarity=0.098 Sum_probs=145.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEE-ecCCCC------------Ccccccccc--CCCceEEEeccccccc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDS-VIVV-DNYFTG------------KKDNLIHHF--GNPRFELIRHDVVEPI 176 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~-V~~l-~r~~~~------------~~~~~~~~~--~~~~v~~~~~D~~~~~ 176 (447)
..++++|||||+|+||.+++++|+++|++ |+++ +|+... ..+++...+ ...++.++.+|+++..
T Consensus 249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~ 328 (525)
T 3qp9_A 249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE 328 (525)
T ss_dssp CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence 36789999999999999999999999997 5555 676322 111111111 1346889999998763
Q ss_pred -----------ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHCC-----C-eEEEEeCccc-cC
Q 013226 177 -----------LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVG-----A-RFLLTSTSEV-YG 234 (447)
Q Consensus 177 -----------~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~g-----~-r~v~~SS~~v-~g 234 (447)
...+|+||||||+........ ....++++|+.|+.++.+++.... . +||++||.+. +|
T Consensus 329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g 408 (525)
T 3qp9_A 329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWG 408 (525)
T ss_dssp HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTC
T ss_pred HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCC
Confidence 135899999999875543332 245689999999999999987765 5 8999999874 34
Q ss_pred CCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCe
Q 013226 235 DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPL 314 (447)
Q Consensus 235 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~ 314 (447)
.+. ...|+.+|+..+.+.+++. ..|+++++|.||.+ ..++... .... ..+....
T Consensus 409 ~~g-----------------~~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~-~tgm~~~--~~~~----~~~~~~g- 462 (525)
T 3qp9_A 409 GAG-----------------QGAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPW-EGSRVTE--GATG----ERLRRLG- 462 (525)
T ss_dssp CTT-----------------CHHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCB-TTSGGGS--SHHH----HHHHHTT-
T ss_pred CCC-----------------CHHHHHHHHHHHHHHHHHH-hCCCCEEEEECCcc-ccccccc--hhhH----HHHHhcC-
Confidence 322 3789999999999876653 45999999999988 3332111 1111 1111111
Q ss_pred EEecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEecCCCccCHHHHHHHH
Q 013226 315 TVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEFTMLELAEVV 365 (447)
Q Consensus 315 ~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i 365 (447)
...+..+++++++..++..+.... +. ..+.|..+...+
T Consensus 463 ---------~~~l~pee~a~~l~~~l~~~~~~v--~v--~~~dw~~~~~~~ 500 (525)
T 3qp9_A 463 ---------LRPLAPATALTALDTALGHGDTAV--TI--ADVDWSSFAPGF 500 (525)
T ss_dssp ---------BCCBCHHHHHHHHHHHHHHTCSEE--EE--CCBCHHHHHHHH
T ss_pred ---------CCCCCHHHHHHHHHHHHhCCCCeE--EE--EeCCHHHHHhhc
Confidence 135788999999999998765432 22 245666555443
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=152.00 Aligned_cols=198 Identities=18% Similarity=0.207 Sum_probs=134.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccc-ccc---------cccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDV-VEP---------ILLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~-~~~---------~~~~ 179 (447)
++++|+++||||+++||+++++.|+++|++|++.++.. .+.....+ ...++..+.+|+ .+. .+.+
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~---~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~ 395 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD---ATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGT 395 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC---CHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc---HHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCC
Confidence 57889999999999999999999999999999988631 11111111 123456677787 322 1346
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~ 249 (447)
+|++|||||+.....+.+ +.+..+++|+.|+.++.+++. +.+. +||++||.. .++.+
T Consensus 396 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~------------- 462 (604)
T 2et6_A 396 IDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNF------------- 462 (604)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCT-------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCC-------------
Confidence 999999999865443332 245689999999988888763 3444 999999976 33321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
....|+.||+....+.+.++.+ +||++.+|.||. ..+ + ..... .. .....
T Consensus 463 ----~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~-m-------~~~~~----~~----------~~~~~ 515 (604)
T 2et6_A 463 ----GQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETA-M-------TLSIM----RE----------QDKNL 515 (604)
T ss_dssp ----TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCC-C------------------------------CCS
T ss_pred ----CChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCc-c-------ccccC----ch----------hhccC
Confidence 1268999999999999999876 489999999973 221 1 01100 00 00124
Q ss_pred ccHHHHHHHHHHHHcCCC--CC-cEEecC
Q 013226 327 QFVSDLVEGLIRLMEGDH--VG-PFNLGN 352 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~~--~g-~~~i~~ 352 (447)
...+|+|.++++++.... .| .+.+.+
T Consensus 516 ~~pe~vA~~v~~L~s~~~~itG~~~~vdG 544 (604)
T 2et6_A 516 YHADQVAPLLVYLGTDDVPVTGETFEIGG 544 (604)
T ss_dssp SCGGGTHHHHHHTTSTTCCCCSCEEEEET
T ss_pred CCHHHHHHHHHHHhCCccCCCCcEEEECC
Confidence 578999999999886532 34 444443
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=135.50 Aligned_cols=230 Identities=13% Similarity=0.050 Sum_probs=145.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEecCCCCCccc-----------cccc--cCCCceEEEeccccccc--
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMD-RGDSVIVVDNYFTGKKDN-----------LIHH--FGNPRFELIRHDVVEPI-- 176 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~-~G~~V~~l~r~~~~~~~~-----------~~~~--~~~~~v~~~~~D~~~~~-- 176 (447)
..+|++|||||+++||+++++.|++ +|++|++++|........ .... .....+..+.+|++++.
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v 124 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK 124 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 4688999999999999999999999 999999998865433211 1111 12346778899998763
Q ss_pred ----------ccCCCEEEEeccCCC-------------CCCc---------------------c----cChHHHHHHHHH
Q 013226 177 ----------LLEVDQIYHLACPAS-------------PVHY---------------------K----FNPVKTIKTNVV 208 (447)
Q Consensus 177 ----------~~~~d~Vih~Ag~~~-------------~~~~---------------------~----~~~~~~~~~Nv~ 208 (447)
+.++|++|||||... .... . ++.+..+++|..
T Consensus 125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~ 204 (405)
T 3zu3_A 125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG 204 (405)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence 346999999999641 1111 1 123456788877
Q ss_pred HHH-HHHHHHHHC-----CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---h-CC
Q 013226 209 GTL-NMLGLAKRV-----GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---L-GI 278 (447)
Q Consensus 209 gt~-~ll~aa~~~-----g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~-~i 278 (447)
++. .+++++... +.++|++||...... .+......|+.+|...+.+.+.++.+ . |+
T Consensus 205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~--------------~p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GI 270 (405)
T 3zu3_A 205 EDWQMWIDALLDAGVLAEGAQTTAFTYLGEKIT--------------HDIYWNGSIGAAKKDLDQKVLAIRESLAAHGGG 270 (405)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGG--------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCc--------------CCCccchHHHHHHHHHHHHHHHHHHHhCcccCe
Confidence 765 566655432 248999999763211 11111278999999999999999865 4 89
Q ss_pred cEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCCc-EEecCCC--c
Q 013226 279 EARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP-FNLGNPG--E 355 (447)
Q Consensus 279 ~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~-~~i~~~~--~ 355 (447)
++.++.||.|-.+....-+ ..+.......+ ++..+| ..+||++++.+++....-|. ..+.++. .
T Consensus 271 RVNaVaPG~i~T~~s~~ip--~~p~y~~~l~~--~mkr~G---------~~Ed~a~~i~~L~sd~l~~~~~~~D~~~~~r 337 (405)
T 3zu3_A 271 DARVSVLKAVVSQASSAIP--MMPLYLSLLFK--VMKEKG---------THEGCIEQVYSLYKDSLCGDSPHMDQEGRLR 337 (405)
T ss_dssp EEEEEECCCCCCHHHHTST--THHHHHHHHHH--HHHHHT---------CCCCHHHHHHHHHHHTTSSSCCCBCTTSCEE
T ss_pred EEEEEEeCCCcCchhhcCC--CCcHHHHHHHH--HHhcCC---------CcHHHHHHHHHHHhccccCCCCCcCCCcCCC
Confidence 9999999988765321111 11111111111 122122 22689999999998654432 2222222 3
Q ss_pred cCHHHHHHHHHHHh
Q 013226 356 FTMLELAEVVQEII 369 (447)
Q Consensus 356 ~s~~el~~~i~~~~ 369 (447)
+.-+|+-+.+++..
T Consensus 338 ~d~~e~~~~~q~~~ 351 (405)
T 3zu3_A 338 ADYKELDPEVQNQV 351 (405)
T ss_dssp CCHHHHCHHHHHHH
T ss_pred CchhhcCHHHHHHH
Confidence 55666666665554
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-14 Score=158.28 Aligned_cols=200 Identities=17% Similarity=0.198 Sum_probs=135.9
Q ss_pred ccCCCCeEEEEcCCCh-hHHHHHHHHHhCCCeEEEEecCCCCCccc----cccccC--CCceEEEeccccccc-------
Q 013226 111 LQRKSLRILVTGGAGF-VGSHLVDRLMDRGDSVIVVDNYFTGKKDN----LIHHFG--NPRFELIRHDVVEPI------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~-IG~~l~~~L~~~G~~V~~l~r~~~~~~~~----~~~~~~--~~~v~~~~~D~~~~~------- 176 (447)
..+++|++|||||+|+ ||.++++.|+++|++|++++++.....+. +..... ..++.++.+|+.+..
T Consensus 671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~ 750 (1887)
T 2uv8_A 671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIE 750 (1887)
T ss_dssp BCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHH
Confidence 3468899999999998 99999999999999999985432222111 111111 346888999997652
Q ss_pred ----------cc-CCCEEEEeccCCCCC-Cccc------ChHHHHHHHHHHHHHHHHHHHHC------C-CeEEEEeCcc
Q 013226 177 ----------LL-EVDQIYHLACPASPV-HYKF------NPVKTIKTNVVGTLNMLGLAKRV------G-ARFLLTSTSE 231 (447)
Q Consensus 177 ----------~~-~~d~Vih~Ag~~~~~-~~~~------~~~~~~~~Nv~gt~~ll~aa~~~------g-~r~v~~SS~~ 231 (447)
+. .+|+||||||+.... .+.. ....++++|+.++.+++++++.. + .+||++||..
T Consensus 751 ~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~a 830 (1887)
T 2uv8_A 751 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH 830 (1887)
T ss_dssp HHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCT
T ss_pred HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChH
Confidence 22 599999999986543 2222 23568999999999999987432 2 2899999976
Q ss_pred ccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH-HHHHHhhhC--CcEEEEeeccccCCCCccCCCchHHHHHHHH
Q 013226 232 VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL-TMDYHRGLG--IEARIARIFNTYGPRMCIDDGRVVSNFVAQA 308 (447)
Q Consensus 232 v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~-~~~~~~~~~--i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~ 308 (447)
.+.. ....|+.||++.+.+ .+.++.+.+ |++++|+||++.|..+.... .... ..
T Consensus 831 g~~g------------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~-~~~~----~~ 887 (1887)
T 2uv8_A 831 GTFG------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-NIIA----EG 887 (1887)
T ss_dssp TCSS------------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----C-CTTH----HH
T ss_pred hccC------------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccc-hhHH----HH
Confidence 3211 126799999999998 666665543 99999999999853321110 1111 11
Q ss_pred HhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 309 LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
....++ .+...+|+|.++++++...
T Consensus 888 ~~~~pl----------r~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 888 IEKMGV----------RTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp HHTTSC----------CCEEHHHHHHHHHGGGSHH
T ss_pred HHhcCC----------CCCCHHHHHHHHHHHhCCC
Confidence 221111 2347899999999998765
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-13 Score=150.76 Aligned_cols=221 Identities=19% Similarity=0.139 Sum_probs=144.7
Q ss_pred ccCCCCeEEEEcCCCh-hHHHHHHHHHhCCCeEEEEecCCCCCcc----ccccccC--CCceEEEeccccccc-------
Q 013226 111 LQRKSLRILVTGGAGF-VGSHLVDRLMDRGDSVIVVDNYFTGKKD----NLIHHFG--NPRFELIRHDVVEPI------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~-IG~~l~~~L~~~G~~V~~l~r~~~~~~~----~~~~~~~--~~~v~~~~~D~~~~~------- 176 (447)
..+++|++|||||+|+ ||.+++++|+++|++|++++++...... ++...+. ..++.++.+|+.+..
T Consensus 648 m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~ 727 (1878)
T 2uv9_A 648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVN 727 (1878)
T ss_dssp BCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHH
Confidence 3468899999999999 9999999999999999998654222111 1111111 346888999997752
Q ss_pred --------cc-CCCEEEEeccCCCCC-Cccc------ChHHHHHHHHHHHHHHHHHHH--HC----C-CeEEEEeCcccc
Q 013226 177 --------LL-EVDQIYHLACPASPV-HYKF------NPVKTIKTNVVGTLNMLGLAK--RV----G-ARFLLTSTSEVY 233 (447)
Q Consensus 177 --------~~-~~d~Vih~Ag~~~~~-~~~~------~~~~~~~~Nv~gt~~ll~aa~--~~----g-~r~v~~SS~~v~ 233 (447)
+. .+|+||||||+.... .+.. ....++++|+.|+.+++++++ .. + .+||++||...+
T Consensus 728 ~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~ 807 (1878)
T 2uv9_A 728 YIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGT 807 (1878)
T ss_dssp HHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSS
T ss_pred HHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhc
Confidence 22 589999999986543 2222 235689999999998887732 22 2 389999997632
Q ss_pred CCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh-h--CCcEEEEeecccc-CCCCccCCCchHHHHHHHHH
Q 013226 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG-L--GIEARIARIFNTY-GPRMCIDDGRVVSNFVAQAL 309 (447)
Q Consensus 234 g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~--~i~~~ivRp~~i~-Gp~~~~~~~~~~~~~~~~~~ 309 (447)
.. ....|+.+|+..+.+++.+..+ . .+++++|.||.+- ++... . .......+
T Consensus 808 ~g------------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~---~---~~~~~~~~ 863 (1878)
T 2uv9_A 808 FG------------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMS---A---NNLVAEGV 863 (1878)
T ss_dssp SS------------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCS---H---HHHTHHHH
T ss_pred cC------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCcccc---c---chhhHHHH
Confidence 11 1267999999999998766433 2 3999999999987 43211 0 11112222
Q ss_pred hCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCC----CC-cEEe--cCCC--ccCHHHHHHHH
Q 013226 310 RKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH----VG-PFNL--GNPG--EFTMLELAEVV 365 (447)
Q Consensus 310 ~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~----~g-~~~i--~~~~--~~s~~el~~~i 365 (447)
...++ .+...+|+|+++++++.... .| .+.+ .++. ...+.++...+
T Consensus 864 ~~~pl----------r~~sPeEVA~avlfLaSd~a~s~iTGq~I~VDVDGG~~~~~~l~el~~~l 918 (1878)
T 2uv9_A 864 EKLGV----------RTFSQQEMAFNLLGLMAPAIVNLCQSDPVFADLNGGLQFIPDLKGLMTKL 918 (1878)
T ss_dssp HTTTC----------CCBCHHHHHHHHHHHHSHHHHHHHTTSCEEEEESCSGGGCTTHHHHHHHH
T ss_pred HhcCC----------CCCCHHHHHHHHHHHhCCcccccccCcEEEEEcCCCccccCCHHHHHHHH
Confidence 22111 23488999999999886543 23 5554 2332 24556655443
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=144.04 Aligned_cols=220 Identities=17% Similarity=0.140 Sum_probs=142.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC--------CCccccccccC--CCceEEEeccccc-------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT--------GKKDNLIHHFG--NPRFELIRHDVVE------- 174 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~--------~~~~~~~~~~~--~~~v~~~~~D~~~------- 174 (447)
++++|+++||||+++||+++++.|+++|++|++.+|... ...+.....+. ...+.....|+.+
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~ 84 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVET 84 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHH
Confidence 467899999999999999999999999999999987531 11111111111 1112111122211
Q ss_pred --ccccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCcc-ccCCCCCCCCC
Q 013226 175 --PILLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSE-VYGDPLQHPQA 242 (447)
Q Consensus 175 --~~~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~-v~g~~~~~~~~ 242 (447)
..+.++|++|||||+.....+.+ +.+..+++|+.|+.++.+++. +.+. +||++||.. .++.+.
T Consensus 85 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~~----- 159 (604)
T 2et6_A 85 AVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFG----- 159 (604)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTT-----
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCC-----
Confidence 12346999999999865433332 245689999999988888763 3343 999999976 444321
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecC
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
...|+.||++...+.+.++.+ +||++.+|.|+ +.. .+.... .+
T Consensus 160 ------------~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T------------~m~~~~---~~------ 205 (604)
T 2et6_A 160 ------------QANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARS------------RMTESI---MP------ 205 (604)
T ss_dssp ------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCC------------HHHHTT---SC------
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcC------------cccccc---CC------
Confidence 268999999999999999876 48999999996 211 111000 00
Q ss_pred CCeeEccccHHHHHHHHHHHHcCCC--CC-cEEecCC------------------CccCHHHHHHHHHHHhCC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGDH--VG-PFNLGNP------------------GEFTMLELAEVVQEIIDR 371 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~~--~g-~~~i~~~------------------~~~s~~el~~~i~~~~g~ 371 (447)
.........+|+|.++++++.... .| .+.+.++ ..++..++.+.+.+..+.
T Consensus 206 -~~~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 277 (604)
T 2et6_A 206 -PPMLEKLGPEKVAPLVLYLSSAENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEILDY 277 (604)
T ss_dssp -HHHHTTCSHHHHHHHHHHHTSSSCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHTCC
T ss_pred -hhhhccCCHHHHHHHHHHHhCCcccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhhch
Confidence 001123578999999999987641 23 3333322 346788888888776543
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=136.18 Aligned_cols=203 Identities=15% Similarity=0.049 Sum_probs=131.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEecCCCCCccc-----------cccc--cCCCceEEEeccccccc---
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMD-RGDSVIVVDNYFTGKKDN-----------LIHH--FGNPRFELIRHDVVEPI--- 176 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~-~G~~V~~l~r~~~~~~~~-----------~~~~--~~~~~v~~~~~D~~~~~--- 176 (447)
.+|++|||||+++||+++++.|++ .|++|++++|+....... .... .....+..+.+|++++.
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~ 139 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARA 139 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 588999999999999999999999 999999999875543321 0011 12345778899997762
Q ss_pred ---------c-cCCCEEEEeccCC-------------CCCCc-------------------------ccChHHHHHHHHH
Q 013226 177 ---------L-LEVDQIYHLACPA-------------SPVHY-------------------------KFNPVKTIKTNVV 208 (447)
Q Consensus 177 ---------~-~~~d~Vih~Ag~~-------------~~~~~-------------------------~~~~~~~~~~Nv~ 208 (447)
+ .++|++|||||.. ..... ..+....+++|..
T Consensus 140 ~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~~ 219 (422)
T 3s8m_A 140 QVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGG 219 (422)
T ss_dssp HHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhch
Confidence 4 5699999999862 11111 1113345666666
Q ss_pred HHH-HHHHHHHHC-----CCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCc
Q 013226 209 GTL-NMLGLAKRV-----GARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIE 279 (447)
Q Consensus 209 gt~-~ll~aa~~~-----g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~ 279 (447)
++. .+++++... +.++|++||.+.... .|......|+.||+..+.+.+.++.++ |++
T Consensus 220 ~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~--------------~p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIR 285 (422)
T 3s8m_A 220 QDWELWIDALEGAGVLADGARSVAFSYIGTEIT--------------WPIYWHGALGKAKVDLDRTAQRLNARLAKHGGG 285 (422)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGG--------------HHHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEEeCchhhcc--------------CCCccchHHHHHHHHHHHHHHHHHHHhCccCEE
Confidence 654 666665443 238999999763210 011112679999999999999998764 899
Q ss_pred EEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 280 ARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 280 ~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
+.+|.||.|-.+....-+ ..........+ ++...| ..+||++++.+++.+.
T Consensus 286 VNaVaPG~i~T~~~~~ip--~~~~~~~~~~~--~m~r~G---------~pEdva~~v~~L~sd~ 336 (422)
T 3s8m_A 286 ANVAVLKSVVTQASAAIP--VMPLYISMVYK--IMKEKG---------LHEGTIEQLDRLFRER 336 (422)
T ss_dssp EEEEEECCCCCTTGGGST--HHHHHHHHHHH--HHHHTT---------CCCCHHHHHHHHHHHT
T ss_pred EEEEEcCCCcChhhhcCC--CChHHHHHHHh--hhcCCc---------ChHHHHHHHHHHhcch
Confidence 999999999877532111 11111111111 111112 2268999999988754
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=149.03 Aligned_cols=200 Identities=17% Similarity=0.184 Sum_probs=133.3
Q ss_pred ccCCCCeEEEEcCCCh-hHHHHHHHHHhCCCeEEEEecCCCCCcccccccc----C--CCceEEEeccccccc-------
Q 013226 111 LQRKSLRILVTGGAGF-VGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF----G--NPRFELIRHDVVEPI------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~-IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~----~--~~~v~~~~~D~~~~~------- 176 (447)
.++++|+++||||+|+ ||+++++.|+++|++|++++++.....+.....+ . ..++.++.+|+.+..
T Consensus 472 msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe 551 (1688)
T 2pff_A 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIE 551 (1688)
T ss_dssp CCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHH
T ss_pred cccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 4578899999999998 9999999999999999998533222222211111 1 246788999997752
Q ss_pred ----------cc-CCCEEEEeccCCCCC-Cccc------ChHHHHHHHHHHHHHHHHHHHH--C----C-CeEEEEeCcc
Q 013226 177 ----------LL-EVDQIYHLACPASPV-HYKF------NPVKTIKTNVVGTLNMLGLAKR--V----G-ARFLLTSTSE 231 (447)
Q Consensus 177 ----------~~-~~d~Vih~Ag~~~~~-~~~~------~~~~~~~~Nv~gt~~ll~aa~~--~----g-~r~v~~SS~~ 231 (447)
+. .+|+||||||+.... .... .....+++|+.++.+++++++. . + .+||++||..
T Consensus 552 ~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiA 631 (1688)
T 2pff_A 552 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH 631 (1688)
T ss_dssp HHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCT
T ss_pred HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChH
Confidence 22 599999999976543 2222 2356889999999999988732 2 2 2899999976
Q ss_pred ccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH-HHHHHhhhC--CcEEEEeeccccCCCCccCCCchHHHHHHHH
Q 013226 232 VYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL-TMDYHRGLG--IEARIARIFNTYGPRMCIDDGRVVSNFVAQA 308 (447)
Q Consensus 232 v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~-~~~~~~~~~--i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~ 308 (447)
.... ....|+.||++.+.+ .+.++.+.+ +++++|.||.+.|..+.... . .....
T Consensus 632 G~~G------------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~-e----~~~~~ 688 (1688)
T 2pff_A 632 GTFG------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-N----IIAEG 688 (1688)
T ss_dssp TTSS------------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTT-T----TCSTT
T ss_pred hccC------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCc-h----HHHHH
Confidence 3211 126799999999998 444444332 88999999999854321110 0 00000
Q ss_pred HhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 309 LRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
... .+ ..+...+|+|+++++++...
T Consensus 689 l~~--ip--------lR~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 689 IEK--MG--------VRTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp TSS--SS--------CCCCCCCTTHHHHHHHTSTT
T ss_pred HHh--CC--------CCCCCHHHHHHHHHHHhCCC
Confidence 010 00 12347789999999999766
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=140.23 Aligned_cols=200 Identities=17% Similarity=0.153 Sum_probs=137.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHH-hCCC-eEEEEecCCCCCc--ccccccc--CCCceEEEecccccccc---------
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLM-DRGD-SVIVVDNYFTGKK--DNLIHHF--GNPRFELIRHDVVEPIL--------- 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~-~~G~-~V~~l~r~~~~~~--~~~~~~~--~~~~v~~~~~D~~~~~~--------- 177 (447)
..+++++||||+|+||+.+++.|+ ++|+ +|++++|+..... +++...+ ...++.++.+|+++...
T Consensus 528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~ 607 (795)
T 3slk_A 528 DAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIP 607 (795)
T ss_dssp CTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred ccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 367899999999999999999999 7999 4888888643221 1111111 23478899999977631
Q ss_pred --cCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc-ccCCCCCCCCCCCcCCCCC
Q 013226 178 --LEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE-VYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 178 --~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~-v~g~~~~~~~~e~~~~~~~ 250 (447)
..+|+||||||+.....+.+. ....+++|+.|+.++.+++...- +||++||.+ ..|.+.
T Consensus 608 ~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l-~iV~~SS~ag~~g~~g------------- 673 (795)
T 3slk_A 608 DEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV-ALVLFSSVSGVLGSGG------------- 673 (795)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS-EEEEEEETHHHHTCSS-------------
T ss_pred HhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC-EEEEEccHHhcCCCCC-------------
Confidence 158999999998765544432 45588999999999999883322 999999987 445432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
...|+.+|...+.+.+++. ..|++++.|.||.+-.++... ..-........+. . ...+..+
T Consensus 674 ----~~~YaAaka~~~alA~~~~-~~Gi~v~sI~pG~v~t~g~~~---~~~~~~~~~~~~~-g----------~~~l~~~ 734 (795)
T 3slk_A 674 ----QGNYAAANSFLDALAQQRQ-SRGLPTRSLAWGPWAEHGMAS---TLREAEQDRLARS-G----------LLPISTE 734 (795)
T ss_dssp ----CHHHHHHHHHHHHHHHHHH-HTTCCEEEEEECCCSCCCHHH---HHHHHHHHHHHHT-T----------BCCCCHH
T ss_pred ----CHHHHHHHHHHHHHHHHHH-HcCCeEEEEECCeECcchhhc---cccHHHHHHHHhc-C----------CCCCCHH
Confidence 2789999998888887764 469999999999887654210 0001111111111 1 1245667
Q ss_pred HHHHHHHHHHcCCCC
Q 013226 331 DLVEGLIRLMEGDHV 345 (447)
Q Consensus 331 D~a~ai~~~l~~~~~ 345 (447)
+...++..++..+..
T Consensus 735 e~~~~~~~~l~~~~~ 749 (795)
T 3slk_A 735 EGLSQFDAACGGAHT 749 (795)
T ss_dssp HHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHhCCCc
Confidence 888888877776543
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-12 Score=125.34 Aligned_cols=165 Identities=10% Similarity=-0.097 Sum_probs=114.1
Q ss_pred CCCCeEEEEcCCChhHHH--HHHHHHhCCCeEEEEecCCCCCcc-----------ccccc--cCCCceEEEeccccccc-
Q 013226 113 RKSLRILVTGGAGFVGSH--LVDRLMDRGDSVIVVDNYFTGKKD-----------NLIHH--FGNPRFELIRHDVVEPI- 176 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~--l~~~L~~~G~~V~~l~r~~~~~~~-----------~~~~~--~~~~~v~~~~~D~~~~~- 176 (447)
..+|++|||||+++||.+ +++.|+++|++|++++|....... .+... .....+..+.+|+++..
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~ 137 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET 137 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence 478999999999999999 999999999999999986543221 11111 12346788999997763
Q ss_pred -----------ccCCCEEEEeccCC-------------CCCCc-------------------------ccChHHHHHHHH
Q 013226 177 -----------LLEVDQIYHLACPA-------------SPVHY-------------------------KFNPVKTIKTNV 207 (447)
Q Consensus 177 -----------~~~~d~Vih~Ag~~-------------~~~~~-------------------------~~~~~~~~~~Nv 207 (447)
+.++|++|||||.. ..... .......+++|.
T Consensus 138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~ 217 (418)
T 4eue_A 138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG 217 (418)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence 24589999999964 11111 011233556665
Q ss_pred HHHH-HHHHHHHHCC-----CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh----hC
Q 013226 208 VGTL-NMLGLAKRVG-----ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG----LG 277 (447)
Q Consensus 208 ~gt~-~ll~aa~~~g-----~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~ 277 (447)
.+.. .+++++...+ .++|++||.+.... .|......|+.+|++.+.+.+.++.+ .|
T Consensus 218 ~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~--------------~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~G 283 (418)
T 4eue_A 218 GEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRT--------------YKIYREGTIGIAKKDLEDKAKLINEKLNRVIG 283 (418)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGG--------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCC--------------CCccccHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 5554 5566655432 37999999763210 12212278999999999999998764 68
Q ss_pred CcEEEEeeccccCC
Q 013226 278 IEARIARIFNTYGP 291 (447)
Q Consensus 278 i~~~ivRp~~i~Gp 291 (447)
+++.++.||.|-.+
T Consensus 284 IrVN~V~PG~v~T~ 297 (418)
T 4eue_A 284 GRAFVSVNKALVTK 297 (418)
T ss_dssp CEEEEEECCCCCCH
T ss_pred eEEEEEECCcCcCh
Confidence 99999999998765
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.8e-10 Score=133.72 Aligned_cols=224 Identities=15% Similarity=0.160 Sum_probs=141.2
Q ss_pred cCCCCeEEEEcCCCh-hHHHHHHHHHhCCCeEEEEecCCCCC----ccccccccC--CCceEEEecccccc---------
Q 013226 112 QRKSLRILVTGGAGF-VGSHLVDRLMDRGDSVIVVDNYFTGK----KDNLIHHFG--NPRFELIRHDVVEP--------- 175 (447)
Q Consensus 112 ~~~~~~ilVtGasG~-IG~~l~~~L~~~G~~V~~l~r~~~~~----~~~~~~~~~--~~~v~~~~~D~~~~--------- 175 (447)
.++||+++||||+++ ||+++++.|+++|++|++++|+.... .+++..... ..++..+.+|++++
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence 478999999999999 99999999999999999999865431 111222221 23577888998664
Q ss_pred -------cccCCCEEEEeccCC----CC---------CCcccChHHHHHHHHHHHHHHHHHHHH----CCC----eEEEE
Q 013226 176 -------ILLEVDQIYHLACPA----SP---------VHYKFNPVKTIKTNVVGTLNMLGLAKR----VGA----RFLLT 227 (447)
Q Consensus 176 -------~~~~~d~Vih~Ag~~----~~---------~~~~~~~~~~~~~Nv~gt~~ll~aa~~----~g~----r~v~~ 227 (447)
.+.++|++|||||.. .. ..+....+..+++|+.++..+++++.. .+. .+|..
T Consensus 2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~ 2292 (3089)
T 3zen_D 2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLP 2292 (3089)
T ss_dssp HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEE
Confidence 224589999999971 11 011111233488999999888877643 221 23332
Q ss_pred eCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh--h--CCcEEEEeeccccCCCCccCCCchHHH
Q 013226 228 STSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG--L--GIEARIARIFNTYGPRMCIDDGRVVSN 303 (447)
Q Consensus 228 SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~--~i~~~ivRp~~i~Gp~~~~~~~~~~~~ 303 (447)
+|.. .+. ......|+.||++.+.+++.++.+ . +++++.+.||.|-+......... ..
T Consensus 2293 ~ss~-~g~----------------~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~~-~~- 2353 (3089)
T 3zen_D 2293 GSPN-RGM----------------FGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQNDA-IV- 2353 (3089)
T ss_dssp ECSS-TTS----------------CSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTTT-TH-
T ss_pred CCcc-ccc----------------CCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccchh-HH-
Confidence 2221 110 011257999999999999999988 3 58899999999875442211111 11
Q ss_pred HHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC-----Cc--EEecCCC---ccCHHHHHHHHHH
Q 013226 304 FVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV-----GP--FNLGNPG---EFTMLELAEVVQE 367 (447)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~-----g~--~~i~~~~---~~s~~el~~~i~~ 367 (447)
......+. .....+|+|.++++++..... .. ..+.++- ..++.|+.+.+++
T Consensus 2354 ---~~~~~~~~----------r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~~ 2414 (3089)
T 3zen_D 2354 ---SAVEEAGV----------TTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKARE 2414 (3089)
T ss_dssp ---HHHGGGSC----------BCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHHH
T ss_pred ---HHHHhcCC----------CCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHHH
Confidence 11111111 122789999999998875421 12 3333433 3688888887654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-10 Score=134.56 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=111.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEecCCCCCc--ccccccc--CCCceEEEeccccccc-----------c
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFTGKK--DNLIHHF--GNPRFELIRHDVVEPI-----------L 177 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~-V~~l~r~~~~~~--~~~~~~~--~~~~v~~~~~D~~~~~-----------~ 177 (447)
.+|+++||||+|+||+++++.|+++|++ |++++|+..... ......+ ...++.++.+|+.+.. +
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 6789999999999999999999999997 777777644321 1111111 2346788899997763 2
Q ss_pred cCCCEEEEeccCCCCCCcc----cChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCcc-ccCCCCCCCCCCCcCCCC
Q 013226 178 LEVDQIYHLACPASPVHYK----FNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSE-VYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~-v~g~~~~~~~~e~~~~~~ 249 (447)
..+|+||||||+.....+. ++....+++|+.|+.++.+++.... .+||++||.+ ..|.+.
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~g------------ 2030 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAG------------ 2030 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCTT------------
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCCC------------
Confidence 3689999999976443322 2345678999999999988876532 3899999987 333322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccC
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYG 290 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~G 290 (447)
...|+.+|+..+.+++.... .|++...+..+.+-+
T Consensus 2031 -----~~~Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A 2031 -----QANYGFANSAMERICEKRRH-DGLPGLAVQWGAIGD 2065 (2512)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH-TTSCCCEEEECCBCT
T ss_pred -----cHHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcCC
Confidence 27899999999999987544 589988888876543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=106.26 Aligned_cols=166 Identities=10% Similarity=0.019 Sum_probs=108.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEecC----CCCCc---cccccccCCCceEEEecccccccccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-------SVIVVDNY----FTGKK---DNLIHHFGNPRFELIRHDVVEPILLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-------~V~~l~r~----~~~~~---~~~~~~~~~~~v~~~~~D~~~~~~~~ 179 (447)
+.|+|+||||+||||.+++..|+.+|. +|+++|+. ..... .++.+.......++...+-..+++.+
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~ 83 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD 83 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence 357899999999999999999999885 78898875 11111 11111100111233322334556889
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C--eEEEEeCcc---ccCCCCCCCCCCCcCCCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A--RFLLTSTSE---VYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~--r~v~~SS~~---v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
+|+|||+||... ....+..+.+..|+.++.++++++++++ . +||++|.-. ++--... . ..+.
T Consensus 84 aD~Vi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~---~-------~~~p 151 (329)
T 1b8p_A 84 ADVALLVGARPR--GPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKS---A-------PSLP 151 (329)
T ss_dssp CSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHT---C-------TTSC
T ss_pred CCEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHH---c-------CCCC
Confidence 999999999643 2234556788999999999999999874 3 788888622 1100000 0 0111
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCC
Q 013226 254 VRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGP 291 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp 291 (447)
+...|+.++....++...+++..|++...++...|+|.
T Consensus 152 ~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~ 189 (329)
T 1b8p_A 152 AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGN 189 (329)
T ss_dssp GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBC
T ss_pred HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEec
Confidence 12347778877888888888888888777776667774
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=98.35 Aligned_cols=114 Identities=12% Similarity=0.021 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCc-cccccccCCCceEEEec-ccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKK-DNLIHHFGNPRFELIRH-DVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~-D~~~~~~~~~d~Vih~Ag~ 189 (447)
++|+|+||||+|++|..++..|+.+| ++|+++|+...... .++.+......+..+.. +...+++.++|+|||+||.
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~ 86 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV 86 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence 45789999999999999999999998 79999987543000 00111111112322211 1234568899999999995
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
.. .......+....|+.++.++++++++.+. .+|+++|
T Consensus 87 ~~--~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S 125 (326)
T 1smk_A 87 PR--KPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS 125 (326)
T ss_dssp CC--CSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 43 22233456789999999999999999886 6777776
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-08 Score=81.24 Aligned_cols=92 Identities=22% Similarity=0.157 Sum_probs=67.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A 187 (447)
.+++|+|+|+ |++|+.+++.|.++| ++|++++|+..... .+ ....+.++..|+.+. .+.++|+|||++
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~-~~----~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~ 77 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALA-VL----NRMGVATKQVDAKDEAGLAKALGGFDAVISAA 77 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHH-HH----HTTTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHH-HH----HhCCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 4678999999 999999999999999 89999998543211 11 123566777777653 456899999998
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS 229 (447)
+.. .+..+++++.+.|++++.+|+
T Consensus 78 ~~~------------------~~~~~~~~~~~~g~~~~~~~~ 101 (118)
T 3ic5_A 78 PFF------------------LTPIIAKAAKAAGAHYFDLTE 101 (118)
T ss_dssp CGG------------------GHHHHHHHHHHTTCEEECCCS
T ss_pred Cch------------------hhHHHHHHHHHhCCCEEEecC
Confidence 521 135788899999986655444
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.7e-08 Score=94.77 Aligned_cols=165 Identities=10% Similarity=0.063 Sum_probs=99.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEec--CCCCCc---cccccc--cCCCceEEEecc-cccccccCCCEEEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDN--YFTGKK---DNLIHH--FGNPRFELIRHD-VVEPILLEVDQIYH 185 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r--~~~~~~---~~~~~~--~~~~~v~~~~~D-~~~~~~~~~d~Vih 185 (447)
|+|+||||+||+|.+++..|+.+|. ++.++|+ ...... .++.+. .....+++...+ ...+++.++|+|||
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 5899999999999999999999885 6777876 321111 011111 111234444433 35667899999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHH-HHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDE-GKRT 264 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~-sK~~ 264 (447)
+||... .......+.+..|+.+++++++++++++.++|+++|--+.. +.+..+.. ....+...+|. +..-
T Consensus 81 ~Ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~vlv~SNPv~~------~t~~~~k~-~~~p~~rviG~gt~LD 151 (313)
T 1hye_A 81 TSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVITNPVDV------MTYKALVD-SKFERNQVFGLGTHLD 151 (313)
T ss_dssp CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECSSSHHH------HHHHHHHH-HCCCTTSEEECTTHHH
T ss_pred CCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecCcHHH------HHHHHHHh-hCcChhcEEEeCccHH
Confidence 999643 22334567899999999999999988764466666632210 00000000 01112244555 5555
Q ss_pred HHHHHHHHHhhhCCcEEEEeeccccC
Q 013226 265 AETLTMDYHRGLGIEARIARIFNTYG 290 (447)
Q Consensus 265 ~E~~~~~~~~~~~i~~~ivRp~~i~G 290 (447)
..++...+++..|++..-++. .++|
T Consensus 152 ~~r~~~~la~~lgv~~~~v~~-~v~G 176 (313)
T 1hye_A 152 SLRFKVAIAKFFGVHIDEVRT-RIIG 176 (313)
T ss_dssp HHHHHHHHHHHHTCCGGGEEC-CEEE
T ss_pred HHHHHHHHHHHhCcCHHHeEE-EEee
Confidence 566666666667776555554 4455
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=93.48 Aligned_cols=110 Identities=15% Similarity=0.045 Sum_probs=76.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEec--CCCCCc---cccccccC-CCceEEEecccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDN--YFTGKK---DNLIHHFG-NPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r--~~~~~~---~~~~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
|+|+||||+|++|..++..|+.+|. ++.++|+ ...... .++.+... ...+.+...| .+++.++|+|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~--~~a~~~aDvVi~~a 78 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG--YEDTAGSDVVVITA 78 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC--GGGGTTCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCC--HHHhCCCCEEEEcC
Confidence 5899999999999999999999886 6777877 321111 11111100 1233333333 56788999999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
|... .......+.+..|+.+++++++++++++. .+|+++|
T Consensus 79 g~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S 119 (303)
T 1o6z_A 79 GIPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (303)
T ss_dssp CCCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 9543 22234556889999999999999999986 7777766
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.9e-07 Score=88.55 Aligned_cols=166 Identities=12% Similarity=-0.011 Sum_probs=103.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHH-hCCCeEEEEecCCCCCccccc-----------cc--cCCCceEEEeccccccc-
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNYFTGKKDNLI-----------HH--FGNPRFELIRHDVVEPI- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~-~~G~~V~~l~r~~~~~~~~~~-----------~~--~~~~~v~~~~~D~~~~~- 176 (447)
...+|++|||||+++||.+.+..|+ +.|..|+++.+..+....... +. ........+.+|+.++.
T Consensus 47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 47 AKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI 126 (401)
T ss_dssp SCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence 3467999999999999999999998 679999999886544332211 00 11346788999997763
Q ss_pred -----------ccCCCEEEEeccCCCCCCcc------------------------cC------hHHHHHHHHHHHHH---
Q 013226 177 -----------LLEVDQIYHLACPASPVHYK------------------------FN------PVKTIKTNVVGTLN--- 212 (447)
Q Consensus 177 -----------~~~~d~Vih~Ag~~~~~~~~------------------------~~------~~~~~~~Nv~gt~~--- 212 (447)
+.++|+|||++|.......+ .+ -....+-++.+|..
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg 206 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG 206 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence 35699999999965211100 00 00011222333332
Q ss_pred ------HHHHHHHCC-----CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh-CCcE
Q 013226 213 ------MLGLAKRVG-----ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL-GIEA 280 (447)
Q Consensus 213 ------ll~aa~~~g-----~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-~i~~ 280 (447)
.+.+....+ .++|-+|+.+.- -. .|......+|.+|+..|..++.++.+. ++++
T Consensus 207 ~s~~s~w~~al~~a~lla~G~siva~SYiGse----------~t----~P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a 272 (401)
T 4ggo_A 207 GEDWERWIKQLSKEGLLEEGCITLAYSYIGPE----------AT----QALYRKGTIGKAKEHLEATAHRLNKENPSIRA 272 (401)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCG----------GG----HHHHTTSHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred hhHHHHHHHHHHhhhcccCCceEEEEeccCcc----------ee----ecCCCccHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 233444443 478888875410 00 011112468999999999999998775 5667
Q ss_pred EEEeeccccCC
Q 013226 281 RIARIFNTYGP 291 (447)
Q Consensus 281 ~ivRp~~i~Gp 291 (447)
.++.++-+-..
T Consensus 273 ~v~v~~a~vT~ 283 (401)
T 4ggo_A 273 FVSVNKGLVTR 283 (401)
T ss_dssp EEEECCCCCCT
T ss_pred EEEEcCccccc
Confidence 77777655543
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=79.27 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=54.1
Q ss_pred CCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc--
Q 013226 114 KSLRILVTGG----------------AGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-- 175 (447)
Q Consensus 114 ~~~~ilVtGa----------------sG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-- 175 (447)
+||+|||||| ||++|.++++.|+++|++|+++.|....... ....++.++.+..++
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~------~~~~~~~~~v~s~~em~ 75 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE------PHPNLSIREITNTKDLL 75 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC------CCTTEEEEECCSHHHHH
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------CCCCeEEEEHhHHHHHH
Confidence 5899999999 9999999999999999999999985432110 012566666655433
Q ss_pred -----cccCCCEEEEeccCCC
Q 013226 176 -----ILLEVDQIYHLACPAS 191 (447)
Q Consensus 176 -----~~~~~d~Vih~Ag~~~ 191 (447)
.+.++|++||+||+..
T Consensus 76 ~~v~~~~~~~Dili~aAAvsD 96 (232)
T 2gk4_A 76 IEMQERVQDYQVLIHSMAVSD 96 (232)
T ss_dssp HHHHHHGGGCSEEEECSBCCS
T ss_pred HHHHHhcCCCCEEEEcCcccc
Confidence 3457999999999764
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.3e-06 Score=82.17 Aligned_cols=109 Identities=14% Similarity=0.064 Sum_probs=76.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCcc---ccccccCCCceEEEec-ccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKD---NLIHHFGNPRFELIRH-DVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~-D~~~~~~~~~d~Vih~Ag~ 189 (447)
|+|.|+||+|++|..++..|+..| .+|.++|+.. ... ++.+.....++..... +-.+.++.++|+||++||.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence 589999999999999999999988 6999999864 111 1111111112333322 2344468899999999986
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.. .......+.+..|+..+..+++.+.+... ++|++|
T Consensus 79 ~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s 117 (314)
T 1mld_A 79 PR--KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (314)
T ss_dssp CC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 43 22334456789999999999999988764 777754
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-07 Score=88.93 Aligned_cols=78 Identities=12% Similarity=0.192 Sum_probs=54.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCC-CceEEEeccccc-----ccccCCCEEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN-PRFELIRHDVVE-----PILLEVDQIYH 185 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~-----~~~~~~d~Vih 185 (447)
.+++|+++||||+|++|++++..|+++|++|++++|+.+.. +.+...+.. .++.++.+|+.+ ..+.++|+|||
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~-~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn 194 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA-QAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT 194 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHH-HHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEE
Confidence 35789999999999999999999999999999999864322 112111100 123455566643 34567999999
Q ss_pred eccCC
Q 013226 186 LACPA 190 (447)
Q Consensus 186 ~Ag~~ 190 (447)
|||..
T Consensus 195 ~ag~g 199 (287)
T 1lu9_A 195 AGAIG 199 (287)
T ss_dssp CCCTT
T ss_pred CCCcc
Confidence 99853
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-06 Score=77.03 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=52.2
Q ss_pred cCCCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc
Q 013226 112 QRKSLRILVTGG----------------AGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP 175 (447)
Q Consensus 112 ~~~~~~ilVtGa----------------sG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 175 (447)
.+.||+|||||| ||++|.++++.|+++|++|+++++..... . ...++.++....+.
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~---~-----~~g~~~~dv~~~~~ 76 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP---T-----PPFVKRVDVMTALE 76 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC---C-----CTTEEEEECCSHHH
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccc---c-----CCCCeEEccCcHHH
Confidence 468999999999 69999999999999999999998753111 0 11344444333222
Q ss_pred -------cccCCCEEEEeccCCC
Q 013226 176 -------ILLEVDQIYHLACPAS 191 (447)
Q Consensus 176 -------~~~~~d~Vih~Ag~~~ 191 (447)
.+.++|++|||||+..
T Consensus 77 ~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 77 MEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp HHHHHHHHGGGCSEEEECCBCCS
T ss_pred HHHHHHHhcCCCCEEEECCcccC
Confidence 2456999999999764
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-06 Score=84.21 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=75.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC--e-----EEEEecCCC--C---CccccccccCCCceEEEecccccccccCCCE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD--S-----VIVVDNYFT--G---KKDNLIHHFGNPRFELIRHDVVEPILLEVDQ 182 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~--~-----V~~l~r~~~--~---~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~ 182 (447)
.++|+||||+|+||.+++..|+..|. + ++++|+... . ...++.+......-.+...+-...++.++|+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv 82 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence 46899999999999999999998775 5 888887421 0 0111222110111122222223456889999
Q ss_pred EEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC---eEEEEeC
Q 013226 183 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTST 229 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~---r~v~~SS 229 (447)
||++||... ....+..+.++.|+..++++++++++++. +++.+|-
T Consensus 83 VvitAg~pr--kpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 83 AILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp EEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 999998542 22345567889999999999999998864 4666664
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.3e-06 Score=68.14 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----c-ccCCCEEEEe
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----I-LLEVDQIYHL 186 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~-~~~~d~Vih~ 186 (447)
+++++|+|+|+ |.+|+.+++.|.+.|++|++++++.... +.+ .......+.+|..+. . +.++|+||++
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~-~~~----~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 77 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKV-NAY----ASYATHAVIANATEENELLSLGIRNFEYVIVA 77 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHH-HTT----TTTCSEEEECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHH----HHhCCEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 35678999997 9999999999999999999999853221 111 111335566666543 1 4579999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCc
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 230 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~ 230 (447)
++.. .+.|. .+...+++.+. ++|..++.
T Consensus 78 ~~~~------------~~~~~----~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 78 IGAN------------IQAST----LTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp CCSC------------HHHHH----HHHHHHHHTTCSEEEEECCS
T ss_pred CCCc------------hHHHH----HHHHHHHHcCCCeEEEEeCC
Confidence 8621 12333 35667777776 66655553
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.03 E-value=6.8e-06 Score=82.85 Aligned_cols=104 Identities=20% Similarity=0.190 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag 188 (447)
++++|+|+| +|++|+++++.|++.|++|++++|+.... +.+.... ..+..+..|+.+. .+.++|+||||++
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a-~~la~~~--~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESA-KKLSAGV--QHSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHH-HHTTTTC--TTEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHH-HHHHHhc--CCceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 468899998 89999999999999999999999864321 1121111 2356677777643 3568999999997
Q ss_pred CCCCCCcccChHHHHHH--H-------HHHHHHHHHHHHHCCCeE
Q 013226 189 PASPVHYKFNPVKTIKT--N-------VVGTLNMLGLAKRVGARF 224 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~--N-------v~gt~~ll~aa~~~g~r~ 224 (447)
...... ....+++. | ...+.+++++|+++|+++
T Consensus 78 ~~~~~~---i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~ 119 (450)
T 1ff9_A 78 YTFHAT---VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 119 (450)
T ss_dssp --CHHH---HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEE
T ss_pred cccchH---HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeE
Confidence 532110 01122221 2 235788999999999764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.86 E-value=4.4e-05 Score=63.37 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=59.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc------cccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP------ILLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A 187 (447)
.+|+|+|+|+ |++|..+++.|.+.|++|++++++.... +.+... ..+.++..|..+. .+.++|+||++.
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~-~~~~~~---~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDIC-KKASAE---IDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHH---CSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH-HHHHHh---cCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 3578999986 9999999999999999999999853321 111111 1344566665432 245799999987
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEe
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTS 228 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~S 228 (447)
+. . ..|. .+...++..+. ++|..+
T Consensus 78 ~~---------~----~~~~----~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 78 GK---------E----EVNL----MSSLLAKSYGINKTIARI 102 (140)
T ss_dssp SC---------H----HHHH----HHHHHHHHTTCCCEEEEC
T ss_pred CC---------c----hHHH----HHHHHHHHcCCCEEEEEe
Confidence 41 1 1332 45566777776 666543
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.5e-05 Score=72.20 Aligned_cols=73 Identities=11% Similarity=0.207 Sum_probs=43.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEecCCCCC--ccccccccC--CCceEEEecccccccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMD-RGDSVIVVDNYFTGK--KDNLIHHFG--NPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~-~G~~V~~l~r~~~~~--~~~~~~~~~--~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
+.++|.|+|++|.+|+.+++.+.+ .|++++++.+..+.. ........+ ...+.. .+..+..+.++|+||+++.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~--~~dl~~~l~~~DvVIDft~ 81 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV--QSSLDAVKDDFDVFIDFTR 81 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE--ESCSTTTTTSCSEEEECSC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee--cCCHHHHhcCCCEEEEcCC
Confidence 457899999999999999998875 477887544332211 111111111 112221 2223444567999998874
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.6e-05 Score=63.14 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 187 (447)
++++|+|+|+ |.+|+.+++.|.++|++|+++++++... +.+ ....+.++.+|.+++. +.++|.||.+.
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~-~~~----~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~ 78 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKI-ELL----EDEGFDAVIADPTDESFYRSLDLEGVSAVLITG 78 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHH-HHH----HHTTCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHH-HHH----HHCCCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence 4578999997 9999999999999999999999853321 111 1124677888887763 34689999876
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
+
T Consensus 79 ~ 79 (141)
T 3llv_A 79 S 79 (141)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.5e-05 Score=79.32 Aligned_cols=95 Identities=15% Similarity=0.273 Sum_probs=65.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC---CeEEEEecCCCCCccccccccC---CCceEEEecccccc-----cccC--CC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRG---DSVIVVDNYFTGKKDNLIHHFG---NPRFELIRHDVVEP-----ILLE--VD 181 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G---~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~D~~~~-----~~~~--~d 181 (447)
+++|+|+|+ |+||+.+++.|+++| .+|++.+|+..... .+...+. ..++..+..|+.+. .+.+ +|
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~-~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~D 78 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQ-EIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQ 78 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHH-HHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHH-HHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCC
Confidence 368999998 999999999999998 38999998643322 1211111 13577788888664 2333 89
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS 229 (447)
+|||||++.. ...++++|.+.|++++-+++
T Consensus 79 vVin~ag~~~------------------~~~v~~a~l~~g~~vvD~a~ 108 (405)
T 4ina_A 79 IVLNIALPYQ------------------DLTIMEACLRTGVPYLDTAN 108 (405)
T ss_dssp EEEECSCGGG------------------HHHHHHHHHHHTCCEEESSC
T ss_pred EEEECCCccc------------------ChHHHHHHHHhCCCEEEecC
Confidence 9999997321 13678888888987765443
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.73 E-value=3.9e-05 Score=74.18 Aligned_cols=113 Identities=13% Similarity=0.182 Sum_probs=74.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCcc---ccccc-cCCCceEEEecccccccccCCCEEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKD---NLIHH-FGNPRFELIRHDVVEPILLEVDQIYH 185 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~---~~~~~-~~~~~v~~~~~D~~~~~~~~~d~Vih 185 (447)
.+.+++|.|+|++|+||..++..|+..| .+|+++|+.....+. ++.+. ....++.+ ..| ...++.++|+||.
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t~d-~~~al~dADvVvi 82 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-TSD-IKEALTDAKYIVS 82 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-ESC-HHHHHTTEEEEEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-cCC-HHHHhCCCCEEEE
Confidence 4567899999999999999999999998 489999985332111 11111 11112222 122 2345788999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--e-EEEEe
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--R-FLLTS 228 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r-~v~~S 228 (447)
+||.. .....+..+.+..|+...+.+.+.+.+++. . ++.+|
T Consensus 83 taG~p--~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs 126 (343)
T 3fi9_A 83 SGGAP--RKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126 (343)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred ccCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Confidence 99853 222334566789999999999999988764 3 45554
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.66 E-value=1e-05 Score=79.33 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag 188 (447)
+.|+|+|.|| |++|+.+++.|.+ .++|.+.+++.... +.. ...+..+..|+.+. .+.++|+||++++
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~-~~~-----~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p 86 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENL-EKV-----KEFATPLKVDASNFDKLVEVMKEFELVIGALP 86 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHH-HHH-----TTTSEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHH-HHH-----hccCCcEEEecCCHHHHHHHHhCCCEEEEecC
Confidence 4578999998 9999999998865 58999988853221 111 12345566676544 4578999999986
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~S 228 (447)
+.. ...++++|.++|+++|=+|
T Consensus 87 ~~~------------------~~~v~~~~~~~g~~yvD~s 108 (365)
T 3abi_A 87 GFL------------------GFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp GGG------------------HHHHHHHHHHHTCEEEECC
T ss_pred Ccc------------------cchHHHHHHhcCcceEeee
Confidence 320 1267899999999887665
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00058 Score=57.94 Aligned_cols=73 Identities=23% Similarity=0.226 Sum_probs=50.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----c-ccCCCEEE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----I-LLEVDQIY 184 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~-~~~~d~Vi 184 (447)
....+++|+|+|+ |.+|..+++.|.+.|++|++++|+.... +.+.. ...+..+..|..+. . +.++|+||
T Consensus 15 ~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~-~~~~~---~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 15 KKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAF-HRLNS---EFSGFTVVGDAAEFETLKECGMEKADMVF 89 (155)
T ss_dssp --CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGG-GGSCT---TCCSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH-HHHHh---cCCCcEEEecCCCHHHHHHcCcccCCEEE
Confidence 3456789999995 9999999999999999999999864322 11110 22345565664332 2 45799999
Q ss_pred Eecc
Q 013226 185 HLAC 188 (447)
Q Consensus 185 h~Ag 188 (447)
.+.+
T Consensus 90 ~~~~ 93 (155)
T 2g1u_A 90 AFTN 93 (155)
T ss_dssp ECSS
T ss_pred EEeC
Confidence 8875
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00017 Score=69.29 Aligned_cols=110 Identities=16% Similarity=0.154 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---ccccccC--CCceEEEecccccccccCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHFG--NPRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~~--~~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
..++|.|+|+ |++|..++..|+..|. +|+++|++...... ++.+... ...+.+...| ..++.++|+||.+
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~--~~a~~~aDvVvi~ 80 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT--YEDCKDADIVCIC 80 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC--GGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc--HHHhCCCCEEEEe
Confidence 4678999995 9999999999999886 89999985332111 1221111 1233444333 3468899999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
||.. .....+..+.+..|......+.+.+.++.. .++.+|
T Consensus 81 ag~p--~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt 122 (326)
T 3pqe_A 81 AGAN--QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122 (326)
T ss_dssp CSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cccC--CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 9853 222334566889999999999999988764 555555
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00022 Score=67.96 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=74.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-C--CeEEEEecCCCCCc---cccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR-G--DSVIVVDNYFTGKK---DNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~-G--~~V~~l~r~~~~~~---~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
|+|.|+||+|.||..++..|..+ + .+++++|+.. ... .++.+......+..+..+-...++.++|+||-+||.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 68999999999999999988875 4 4899998854 111 111111001112212122334578899999999985
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
. .....+..+.++.|......+.+.+.++.. .++.+|
T Consensus 80 ~--rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt 118 (312)
T 3hhp_A 80 A--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (312)
T ss_dssp S--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence 3 223345677899999999999999988764 566555
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00017 Score=69.98 Aligned_cols=98 Identities=9% Similarity=0.122 Sum_probs=62.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC-----C-eEEEEecCCC-CC-ccccccccCC-CceEEEecccccccccCCCEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG-----D-SVIVVDNYFT-GK-KDNLIHHFGN-PRFELIRHDVVEPILLEVDQIY 184 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G-----~-~V~~l~r~~~-~~-~~~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vi 184 (447)
++++|.|.||||++|+.|++.|++++ . +|+.+.++.. .. .......+.. ..+.+.+.| ...+.++|+||
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~--~~~~~~~DvVf 85 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTE--AAVLGGHDAVF 85 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECC--HHHHTTCSEEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCC--HHHhcCCCEEE
Confidence 34689999999999999999999988 4 7777754321 11 1111111111 123333333 23355899999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccc
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 232 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v 232 (447)
.|.+... +..++..+ +.|+++|-.|+..-
T Consensus 86 ~alg~~~------------------s~~~~~~~-~~G~~vIDlSa~~R 114 (352)
T 2nqt_A 86 LALPHGH------------------SAVLAQQL-SPETLIIDCGADFR 114 (352)
T ss_dssp ECCTTSC------------------CHHHHHHS-CTTSEEEECSSTTT
T ss_pred ECCCCcc------------------hHHHHHHH-hCCCEEEEECCCcc
Confidence 9887321 23566677 77889999998763
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00075 Score=64.63 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=75.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc---cccccc--CCCceEEE-ecccccccccCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD---NLIHHF--GNPRFELI-RHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~-~~D~~~~~~~~~d~Vih~ 186 (447)
+.++|.|+| +|.+|..++..|+..|. +|+++|++...... ++.+.. ......+. ..| .+++.++|+||.+
T Consensus 4 ~~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d--~~a~~~aDvVIi~ 80 (321)
T 3p7m_A 4 ARKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND--YKDLENSDVVIVT 80 (321)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC--GGGGTTCSEEEEC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC--HHHHCCCCEEEEc
Confidence 457899999 59999999999999888 99999986543211 111110 01122332 233 3578899999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
||.. ........+.+..|......+.+.+.++.. .++.+|
T Consensus 81 ag~p--~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 81 AGVP--RKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp CSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCcC--CCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 9853 222334566788999999999999888764 566554
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00033 Score=67.17 Aligned_cols=112 Identities=11% Similarity=0.046 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc---cccccc--CCCceEEE-ecccccccccCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD---NLIHHF--GNPRFELI-RHDVVEPILLEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~-~~D~~~~~~~~~d~Vih 185 (447)
+++++|.|+|+ |.+|..++..|+..|. +|+++|++...... ++.+.. ......+. ..|. +++.++|+||.
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~--~a~~~aDiVIi 81 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY--AAIEGADVVIV 81 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG--GGGTTCSEEEE
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH--HHHCCCCEEEE
Confidence 45679999997 9999999999999998 99999986543211 111110 00122222 2343 67889999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeC
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 229 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS 229 (447)
+||... .......+.+..|..-...+.+.+.+... .++.+|-
T Consensus 82 aag~p~--k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 82 TAGVPR--KPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp CCSCCC--C-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred ccCcCC--CCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 998532 22233446788899999999999888764 5665553
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00043 Score=65.43 Aligned_cols=108 Identities=16% Similarity=0.071 Sum_probs=75.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCc---ccccccc--CCCceEEE-ecccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKK---DNLIHHF--GNPRFELI-RHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~---~~~~~~~--~~~~v~~~-~~D~~~~~~~~~d~Vih~A 187 (447)
|+|.|+|+ |.+|..++..|+..|. +|.++|+++...+ .++.+.. -.....+. ..| .+++.+.|+||.+|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d--~~a~~~aDiVViaa 77 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD--YSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC--GGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC--HHHhCCCCEEEECC
Confidence 68999998 9999999999999988 8999998643321 0111111 01122333 234 66888999999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
|... .......+.+..|..-...+.+.+.+.+. .++.+|
T Consensus 78 g~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs 118 (294)
T 1oju_A 78 GLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp CCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred CCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 8532 22334567888999999999999988864 566655
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00044 Score=66.73 Aligned_cols=168 Identities=13% Similarity=0.024 Sum_probs=98.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEecCCCCC-----ccccccccCCCceEEEecccccccccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-------SVIVVDNYFTGK-----KDNLIHHFGNPRFELIRHDVVEPILLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-------~V~~l~r~~~~~-----~~~~~~~~~~~~v~~~~~D~~~~~~~~ 179 (447)
+++..+|.|+||+|.||+.|+..|+.... ++.++|..+... ..++.+..-.........+-...++.+
T Consensus 21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~ 100 (345)
T 4h7p_A 21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDG 100 (345)
T ss_dssp -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCC
Confidence 34556899999999999999988876532 688888642211 011222111122233333334567889
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCcc---cc--CCCCCCCCCCCcCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSE---VY--GDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~---v~--g~~~~~~~~e~~~~~~~~ 251 (447)
+|+||-+||... .......+.++.|..-.+.+.+.+.++. ++++.+|--. +| -....+ -
T Consensus 101 advVvi~aG~pr--kpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g-----------~ 167 (345)
T 4h7p_A 101 VAIAIMCGAFPR--KAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQG-----------K 167 (345)
T ss_dssp CSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTT-----------C
T ss_pred CCEEEECCCCCC--CCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccC-----------C
Confidence 999999999543 3334567889999999999999987753 3566665321 11 000000 0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCC
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR 292 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~ 292 (447)
..+...-+.+-+-.-++-..+++..+++...|+-..|+|..
T Consensus 168 ~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~H 208 (345)
T 4h7p_A 168 LNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNH 208 (345)
T ss_dssp SCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCS
T ss_pred CCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCC
Confidence 11112223334444444445566678777777655666654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0001 Score=69.06 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=49.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCC-CceEEEecccccccccCCCEEEEeccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN-PRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
.+++++++|+|+ |++|+.++..|++.|++|++++|+.+.. +.+...+.. ..++..+.+.... .++|+|||+++..
T Consensus 116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~-~~la~~~~~~~~~~~~~~~~~~~--~~~DivVn~t~~~ 191 (271)
T 1nyt_A 116 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRA-EELAKLFAHTGSIQALSMDELEG--HEFDLIINATSSG 191 (271)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHH-HHHHHHTGGGSSEEECCSGGGTT--CCCSEEEECCSCG
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHH-HHHHHHhhccCCeeEecHHHhcc--CCCCEEEECCCCC
Confidence 457899999997 8899999999999999999998864322 222211111 1232222211111 5799999999853
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=2.4e-05 Score=69.49 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+++|+|+||+|+||..+++.+...|++|++++++.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 73 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD 73 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999999999999999999999999998853
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00022 Score=68.39 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCc---cccccccC-CCceEEEecccccccccCCCEEEEe
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKK---DNLIHHFG-NPRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~---~~~~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
..+++|.|+|+ |.+|..++..|+..|. +|+++|+...... .++.+... ...+.+...| .+++.++|+||++
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~--~~a~~~aDiVvi~ 83 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE--YSDAKDADLVVIT 83 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC--GGGGTTCSEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc--HHHhcCCCEEEEC
Confidence 46789999995 9999999999999887 8999998533221 11111110 0233433332 3568899999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
||... ....+..+.++.|..-...+.+.+.++.. .++.+|
T Consensus 84 ag~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 84 AGAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp CCCC------------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred CCCCC--CCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 98532 22233456788999999999999988764 555554
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00013 Score=73.76 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=50.5
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCceEEEeccccc-----ccccCCCEEE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE-----PILLEVDQIY 184 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~~~~d~Vi 184 (447)
..+++++|+|+|+ |++|+.++..|++. |++|++++|+.... +.+... ..+..+..|+.+ ..+.++|+||
T Consensus 19 ~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka-~~la~~---~~~~~~~~D~~d~~~l~~~l~~~DvVI 93 (467)
T 2axq_A 19 GRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANA-QALAKP---SGSKAISLDVTDDSALDKVLADNDVVI 93 (467)
T ss_dssp ----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHH-HHHHGG---GTCEEEECCTTCHHHHHHHHHTSSEEE
T ss_pred cCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHh---cCCcEEEEecCCHHHHHHHHcCCCEEE
Confidence 3456789999997 99999999999998 78999999864322 112111 134555666543 3456899999
Q ss_pred EeccC
Q 013226 185 HLACP 189 (447)
Q Consensus 185 h~Ag~ 189 (447)
|+++.
T Consensus 94 n~tp~ 98 (467)
T 2axq_A 94 SLIPY 98 (467)
T ss_dssp ECSCG
T ss_pred ECCch
Confidence 99975
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0013 Score=62.93 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcccc---ccccC-CCceEEEecccccccccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNL---IHHFG-NPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~---~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
++++|.|+|+ |++|..++..|+..|. +|+++|.+........ .+... ...+.+.. + ..+++.++|+||.++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~-~~~a~~~aDvVii~~ 82 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA-G-DYSDVKDCDVIVVTA 82 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CGGGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE-C-CHHHhCCCCEEEEcC
Confidence 3578999997 9999999999999987 8999998754332111 11110 01333332 2 245688999999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEE
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 227 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~ 227 (447)
+... .......+....|+.....+.+.+.++.. .++.+
T Consensus 83 g~p~--k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~ 122 (318)
T 1y6j_A 83 GANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV 122 (318)
T ss_dssp CC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred CCCC--CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence 8532 22233456778999999999999988654 44443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00078 Score=64.26 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=69.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc---cccccc--CCCceEEEe-cccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD---NLIHHF--GNPRFELIR-HDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~-~D~~~~~~~~~d~Vih~Ag 188 (447)
|+|.|+|+ |.+|..++..|+..|+ +|+++|++...... ++.+.. ......+.. .|. +++.++|+||.++|
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~a~g 79 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY--ADTANSDVIVVTSG 79 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--GGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH--HHHCCCCEEEEcCC
Confidence 68999998 9999999999999997 88888876432211 111100 011222222 343 56889999999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
... .......+....|......+.+.+.+.+. .+|.+.|
T Consensus 80 ~p~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 80 APR--KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 532 11222334677888888999999888765 4554444
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00027 Score=59.86 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 187 (447)
..++|+|+|+ |.+|+.+++.|.+.|++|++++++...+.+.+.... ..++.++.+|.+++. +.++|.||-+.
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-cCCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence 3567999995 999999999999999999999985321111221111 235778888876652 56799999776
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
+
T Consensus 80 ~ 80 (153)
T 1id1_A 80 D 80 (153)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00056 Score=66.10 Aligned_cols=93 Identities=19% Similarity=0.198 Sum_probs=59.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEec-CCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDN-YFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r-~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
.++|.|.||+|.+|+.+++.|.++++ +++.+.. +.... .+. +....+.+.+.|. ..+.++|+||.+.|..
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~--~~~--~~g~~i~~~~~~~--~~~~~~DvV~~a~g~~ 79 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ--RMG--FAESSLRVGDVDS--FDFSSVGLAFFAAAAE 79 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC--EEE--ETTEEEECEEGGG--CCGGGCSEEEECSCHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCC--ccc--cCCcceEEecCCH--HHhcCCCEEEEcCCcH
Confidence 36899999999999999999997765 5555542 21111 111 1111233333332 2356899999987621
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
.+..++..+.+.|+++|.+|+..
T Consensus 80 ------------------~s~~~a~~~~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 80 ------------------VSRAHAERARAAGCSVIDLSGAL 102 (340)
T ss_dssp ------------------HHHHHHHHHHHTTCEEEETTCTT
T ss_pred ------------------HHHHHHHHHHHCCCEEEEeCCCC
Confidence 23456777778899988888865
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0007 Score=64.65 Aligned_cols=110 Identities=15% Similarity=0.062 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCC-CCCc----ccccccc----CCCceEEEecccccccccCCCE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYF-TGKK----DNLIHHF----GNPRFELIRHDVVEPILLEVDQ 182 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~-~~~~----~~~~~~~----~~~~v~~~~~D~~~~~~~~~d~ 182 (447)
++.++|.|+|+ |.+|..++..|+..|. +|+++|+.+ +... .++.+.. ...++.. ..| ..++.++|+
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~-t~d--~~a~~~aDv 81 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG-TSD--YADTADSDV 81 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE-ESC--GGGGTTCSE
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE-cCC--HHHhCCCCE
Confidence 34678999996 9999999999999999 999999862 1111 1111110 0112221 122 356889999
Q ss_pred EEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 183 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
||.+||... .......+.+..|....+.+.+.+.+++. .++.+|
T Consensus 82 VIiaag~p~--kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 82 VVITAGIAR--KPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp EEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred EEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 999998532 22344567889999999999999888764 566555
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00094 Score=64.30 Aligned_cols=106 Identities=14% Similarity=0.041 Sum_probs=70.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc---ccccc---cC-CCceEEEecccccccccCCCEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD---NLIHH---FG-NPRFELIRHDVVEPILLEVDQI 183 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~---~~~~~---~~-~~~v~~~~~D~~~~~~~~~d~V 183 (447)
..+.|+|.|+|+ |.+|..++..|+..|+ +|+++|++.+.... .+.+. .. ..++.. ..|. ++++.++|+|
T Consensus 6 ~~~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~-~ea~~~aDiV 82 (331)
T 1pzg_A 6 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-EYSY-EAALTGADCV 82 (331)
T ss_dssp CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-ECSH-HHHHTTCSEE
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-eCCH-HHHhCCCCEE
Confidence 334578999997 9999999999999998 99999986432221 11111 11 112222 1333 3367899999
Q ss_pred EEeccCCCCCCccc-----ChHHHHHHHHHHHHHHHHHHHHCCC
Q 013226 184 YHLACPASPVHYKF-----NPVKTIKTNVVGTLNMLGLAKRVGA 222 (447)
Q Consensus 184 ih~Ag~~~~~~~~~-----~~~~~~~~Nv~gt~~ll~aa~~~g~ 222 (447)
|-++|... .... ........|..-.+.+.+.+.+...
T Consensus 83 i~a~g~p~--~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p 124 (331)
T 1pzg_A 83 IVTAGLTK--VPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 124 (331)
T ss_dssp EECCSCSS--CTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred EEccCCCC--CCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99997532 2222 3445677888888889988887754
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00078 Score=64.66 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=75.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---ccccccC-CCceEEE-ecccccccccCCCEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHFG-NPRFELI-RHDVVEPILLEVDQIY 184 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~~-~~~v~~~-~~D~~~~~~~~~d~Vi 184 (447)
+...++|.|+|+ |.+|..++..|+.+|. +|+++|+.....+. ++.+... ......+ ..|. +++.++|+||
T Consensus 16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~--~~~~~aDiVv 92 (331)
T 4aj2_A 16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY--SVTANSKLVI 92 (331)
T ss_dssp -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG--GGGTTEEEEE
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH--HHhCCCCEEE
Confidence 446789999996 9999999999999987 89999885322111 1211110 0111222 2332 2588999999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.+||... .......+.++.|..-...+.+.+.++.. .++.+|
T Consensus 93 i~aG~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt 136 (331)
T 4aj2_A 93 ITAGARQ--QEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS 136 (331)
T ss_dssp ECCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EccCCCC--CCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9998532 22345667899999999999999988754 566555
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00075 Score=63.66 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=73.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCc---ccccccc--CCCceEEEecccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKK---DNLIHHF--GNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~---~~~~~~~--~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
|||.|+| +|+||+.++..|+.++. ++.++|......+ .++.+.. -.........+. -+++.+.|+||-.||
T Consensus 1 MKV~IiG-aG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d-~~~~~~aDvVvitAG 78 (294)
T 2x0j_A 1 MKLGFVG-AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAG 78 (294)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESC-GGGGTTCSEEEECCC
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCC-HHHhCCCCEEEEecC
Confidence 6899999 59999999999988874 8999987532211 1122111 011122222211 246889999999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeC
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 229 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS 229 (447)
... ....+..+.+..|..-.+.+.+.+.+++. .++.+|-
T Consensus 79 ~pr--kpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 79 LAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCC--CSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCC--CCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 543 33356778899999999999999998875 5555553
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0025 Score=61.86 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=58.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
+++|.|.||||++|..|++.|.++++ ++..+... ......+. +......+.+.| ...+.++|+||-|++.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~-~saG~~~~--~~~~~~~~~~~~--~~~~~~~Dvvf~a~~~-- 74 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RSAGKSLK--FKDQDITIEETT--ETAFEGVDIALFSAGS-- 74 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECT-TTTTCEEE--ETTEEEEEEECC--TTTTTTCSEEEECSCH--
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEcc-ccCCCcce--ecCCCceEeeCC--HHHhcCCCEEEECCCh--
Confidence 46899999999999999999988765 44444321 11111111 111122333233 3346789999988751
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
..+......+.+.|+++|-.|+..
T Consensus 75 ----------------~~s~~~a~~~~~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 75 ----------------STSAKYAPYAVKAGVVVVDNTSYF 98 (366)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEECSSTT
T ss_pred ----------------HhHHHHHHHHHHCCCEEEEcCCcc
Confidence 113345556667888999999875
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00013 Score=70.36 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+++|+|+||+|.||..+++.+...|++|++++++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 180 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD 180 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 678999999999999999999999999999998853
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0016 Score=62.98 Aligned_cols=94 Identities=9% Similarity=0.067 Sum_probs=60.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccc---cCC-CceEEEecccccccccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHH---FGN-PRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~---~~~-~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+++|.|.||+|.+|+.+++.|.++.. +++.+.++.. ....+... +.. ..+.+.+.| . +.++|+||.+++.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~-~g~~~~~~~~~~~g~~~~~~~~~~---~-~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRF-AGEPVHFVHPNLRGRTNLKFVPPE---K-LEPADILVLALPH 78 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTT-TTSBGGGTCGGGTTTCCCBCBCGG---G-CCCCSEEEECCCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchh-hCchhHHhCchhcCcccccccchh---H-hcCCCEEEEcCCc
Confidence 46899999999999999999998765 7777765322 21111110 111 122222222 2 4689999998863
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
. .+..++..+.+.|+++|-.|+..
T Consensus 79 ~------------------~s~~~a~~~~~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 79 G------------------VFAREFDRYSALAPVLVDLSADF 102 (345)
T ss_dssp T------------------HHHHTHHHHHTTCSEEEECSSTT
T ss_pred H------------------HHHHHHHHHHHCCCEEEEcCccc
Confidence 1 12345666677888999888864
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0018 Score=61.74 Aligned_cols=109 Identities=10% Similarity=0.013 Sum_probs=71.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---cccccc--CCCceEEEecccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHF--GNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
|+|.|+|+ |.+|..++..|+..|. +|+++|+....... ++.+.. ......+...| ...++.++|+||.+||
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~-~~~a~~~aDvVii~ag 78 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN-DYGPTEDSDVCIITAG 78 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES-SSGGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC-CHHHhCCCCEEEECCC
Confidence 68999996 9999999999999886 89999986532211 111110 01122222112 2457889999999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
... ....+..+.+..|..-...+.+.+.+++. .++.+|
T Consensus 79 ~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 118 (314)
T 3nep_X 79 LPR--SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA 118 (314)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred CCC--CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 532 22234567889999999999999988764 555555
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0018 Score=62.11 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---cccccc-CCCceEEEecccccccccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHF-GNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
+.++|.|+|+ |.+|..++..|+..+. +|.++|+....... ++.+.. -...+.+.. | ..+++.++|+||..+
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~-~~~a~~~aDvVii~a 84 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A-EYSDAKDADLVVITA 84 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C-CGGGGGGCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEEcC
Confidence 4578999998 9999999999988875 89999985432211 111110 002333333 3 355688999999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
|... .....-.+....|+.....+.+.++++.. .++.+|
T Consensus 85 g~~~--k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 85 GAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 8532 22233456778999999999998888764 566553
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00039 Score=60.74 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=50.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCceEEEecccccc-----c--ccCCCEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----I--LLEVDQI 183 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~--~~~~d~V 183 (447)
...+++|+|+| .|.+|..+++.|.+. |++|+++++++... +.+. ...+..+.+|..+. + +.++|.|
T Consensus 36 ~~~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~-~~~~----~~g~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 36 NPGHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAA-QQHR----SEGRNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp CCTTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHH-HHHH----HTTCCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred CCCCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHH-HHHH----HCCCCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 34577899998 699999999999999 99999999864322 1111 12355566665432 2 5678999
Q ss_pred EEecc
Q 013226 184 YHLAC 188 (447)
Q Consensus 184 ih~Ag 188 (447)
|.+.+
T Consensus 110 i~~~~ 114 (183)
T 3c85_A 110 LLAMP 114 (183)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 98764
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00023 Score=67.22 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=49.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCC----C---ceEEEecccccccccCCCEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN----P---RFELIRHDVVEPILLEVDQIY 184 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~----~---~v~~~~~D~~~~~~~~~d~Vi 184 (447)
.+++++++|+|++ ++|+.++..|++.| +|++++|+.+.. +.+...+.. . .++..+ + .+.+.++|+||
T Consensus 125 ~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~-~~l~~~~~~~~~~~~~~~~d~~~--~-~~~~~~~DilV 198 (287)
T 1nvt_A 125 RVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKA-EALAKEIAEKLNKKFGEEVKFSG--L-DVDLDGVDIII 198 (287)
T ss_dssp CCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHH-HHHHHHHHHHHTCCHHHHEEEEC--T-TCCCTTCCEEE
T ss_pred CcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHH-HHHHHHHhhhcccccceeEEEee--H-HHhhCCCCEEE
Confidence 4578999999975 99999999999999 999998864321 122111110 0 123222 1 34567899999
Q ss_pred EeccCCC
Q 013226 185 HLACPAS 191 (447)
Q Consensus 185 h~Ag~~~ 191 (447)
||++...
T Consensus 199 n~ag~~~ 205 (287)
T 1nvt_A 199 NATPIGM 205 (287)
T ss_dssp ECSCTTC
T ss_pred ECCCCCC
Confidence 9998643
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00048 Score=64.46 Aligned_cols=75 Identities=13% Similarity=0.295 Sum_probs=48.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCC-CceEEEecccccccccCCCEEEEeccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGN-PRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
.+++++++|+|+ |++|+.++..|++.|++|++.+|+.+.. +.+...+.. ..++..+.+... . .++|+|||+++..
T Consensus 116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a-~~l~~~~~~~~~~~~~~~~~~~-~-~~~DivIn~t~~~ 191 (272)
T 1p77_A 116 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKT-KELAERFQPYGNIQAVSMDSIP-L-QTYDLVINATSAG 191 (272)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHH-HHHHHHHGGGSCEEEEEGGGCC-C-SCCSEEEECCCC-
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHccccCCeEEeeHHHhc-c-CCCCEEEECCCCC
Confidence 457899999997 8899999999999999999999864322 222211111 123332222110 0 3799999999753
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00025 Score=69.49 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=50.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCC-ceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.+.+++|+|+|+ |.||..+++.|...|++|++++|+.... +......+.. ..+....+..++.+.++|+||++++.
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~-~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRL-QYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 467899999998 9999999999999999999999864321 1121112211 11111222233445679999999974
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0039 Score=60.06 Aligned_cols=94 Identities=13% Similarity=0.162 Sum_probs=60.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC---CeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRG---DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G---~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
+++|.|.||+|.+|+.+++.|.+++ .+++.+..... ....+. +....+.+.+.|. ..+.++|+||-|.|..
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~-~G~~~~--~~~~~i~~~~~~~--~~~~~vDvVf~a~g~~- 76 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERS-EGKTYR--FNGKTVRVQNVEE--FDWSQVHIALFSAGGE- 76 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTT-TTCEEE--ETTEEEEEEEGGG--CCGGGCSEEEECSCHH-
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCC-CCCcee--ecCceeEEecCCh--HHhcCCCEEEECCCch-
Confidence 4689999999999999999999984 36776653211 111111 1222344433332 3456899999887521
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
.+......+.+.|+++|-.|+..
T Consensus 77 -----------------~s~~~a~~~~~~G~~vId~s~~~ 99 (336)
T 2r00_A 77 -----------------LSAKWAPIAAEAGVVVIDNTSHF 99 (336)
T ss_dssp -----------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred -----------------HHHHHHHHHHHcCCEEEEcCCcc
Confidence 13455666778898999888874
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0049 Score=58.68 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=69.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC--CCeEEEEecCCCCCccc---ccccc--CCCceEEEe-cccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDNYFTGKKDN---LIHHF--GNPRFELIR-HDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~--G~~V~~l~r~~~~~~~~---~~~~~--~~~~v~~~~-~D~~~~~~~~~d~Vih~A 187 (447)
|+|.|+|+ |.+|..++..|++. |++|++++++....... +.+.. ......+.. .|. + .+.++|+||-++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~-~l~~aDvViiav 77 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY-A-DTANSDIVIITA 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG-G-GGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCH-H-HHCCCCEEEEeC
Confidence 57999997 99999999999985 78999999975422211 11100 001112222 343 2 378899999998
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEE
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 227 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~ 227 (447)
+.. ........+.+..|+.....+.+.+.+... .++.+
T Consensus 78 ~~p--~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~ 117 (310)
T 1guz_A 78 GLP--RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117 (310)
T ss_dssp SCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred CCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 742 222223556778899988899988877653 55555
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0024 Score=60.85 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=72.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCcc---ccccccC-CCceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKD---NLIHHFG-NPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~---~~~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
|+|.|+|+ |.+|..++..|+..+ .+|.++|+.....+. ++.+... ...+.+.. + ..+++.++|+||.++|.
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~-~~~a~~~aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G-SYGDLEGARAVVLAAGV 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C-CGGGGTTEEEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C-CHHHhCCCCEEEECCCC
Confidence 58999997 999999999999887 589999986432211 1111100 12333333 3 25678899999999985
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.. .....-.+....|......+.+.+++++. .++.+|
T Consensus 78 ~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 78 AQ--RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp CC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CC--CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 32 22334456778999999999999888764 566553
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0018 Score=61.99 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---cccccc-CCCceEEEecccccccccCCCEEEEecc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHF-GNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.++|.|+|+ |.+|..++..|+..+. +|.++|+....... ++.+.. -...+.+.. | ..+++.++|+||.++|
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~-~~~a~~~aDvVii~ag 81 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G-EYSDCKDADLVVITAG 81 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C-CGGGGTTCSEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEECCC
Confidence 378999998 9999999999998876 89999985332211 111111 002333333 3 3556889999999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
... .....-.+.+..|+.....+.+.+++++. .++.+|
T Consensus 82 ~~~--~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 121 (318)
T 1ez4_A 82 APQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (318)
T ss_dssp C------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 532 22223345678999999999999988864 566553
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00018 Score=69.49 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEeccccccc----ccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPI----LLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~----~~~~d~Vih~Ag 188 (447)
.|++|+|+|++|.||..+++.+...|++|++++++.... +.+...++... ++..+.|..+.. -.++|+||+|+|
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g 227 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKC-RFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG 227 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence 678999999999999999999999999999999854322 22212222211 111112221111 136999999997
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0018 Score=62.01 Aligned_cols=110 Identities=15% Similarity=0.007 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---ccccccC-CCceEEE-ecccccccccCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHFG-NPRFELI-RHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~~-~~~v~~~-~~D~~~~~~~~~d~Vih~ 186 (447)
..++|.|+|+ |.+|..++..|+..|. +|+++|+.....+. ++.+... .....+. ..|. + .+.++|+||-+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~-~-~~~daDiVIit 96 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDY-S-VSAGSKLVVIT 96 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSS-C-SCSSCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCH-H-HhCCCCEEEEe
Confidence 5688999998 9999999999999986 89999985432211 1111100 0111222 2343 2 38899999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
||... ....+..+.+..|..-...+.+.+.+++. .++.+|
T Consensus 97 aG~p~--kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 97 AGARQ--QEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp CSCCC--CSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCCC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 98543 22334556788999999999998888754 555555
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00028 Score=63.16 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=46.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC----CCceEEEecccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG----NPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
|+|+|+||+|++|+.++..|++.|++|++++|+.... +.+....+ ...+. .+..++.+.++|+||++..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~Vi~~~~ 73 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKA-EAKAAEYRRIAGDASIT---GMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHH-HHHHHHHHHHHSSCCEE---EEEHHHHHHHCSEEEECSC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhccccccCCCC---hhhHHHHHhcCCEEEEeCC
Confidence 5799999999999999999999999999999864321 11111100 01122 1223334567999999873
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0026 Score=60.44 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=65.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccc---cccccC-CCceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDN---LIHHFG-NPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~---~~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
|+|.|+|+ |.+|..++..|+..|+ +|+++|++....... +.+... .....+...| .+++.++|+||.+++.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~--~~a~~~aDvVIi~~~~ 77 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG--HSELADAQVVILTAGA 77 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC--GGGGTTCSEEEECC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC--HHHhCCCCEEEEcCCC
Confidence 57999997 9999999999999998 999999864311110 111000 0122232223 3468899999999974
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEE
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 227 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~ 227 (447)
.. .......+....|+.....+.+.+.+... .++.+
T Consensus 78 ~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~ 115 (304)
T 2v6b_A 78 NQ--KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVT 115 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHCSSSEEEEC
T ss_pred CC--CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 32 11222335677899888899888877654 44443
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0031 Score=61.64 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=59.6
Q ss_pred CCccccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcccccc---ccCC-------CceEEEecccccc
Q 013226 107 VPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIH---HFGN-------PRFELIRHDVVEP 175 (447)
Q Consensus 107 ~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~---~~~~-------~~v~~~~~D~~~~ 175 (447)
+|....++.++|.|.||||++|..|++.|.++.+ ++..+.-+.......+.. .... .+..+.+.|..+
T Consensus 11 ~~~~~~M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~- 89 (381)
T 3hsk_A 11 VPRGSHMSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEG- 89 (381)
T ss_dssp -------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCT-
T ss_pred ccccccCCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhh-
Confidence 3433445667899999999999999998887754 665553111111121111 1000 112222222211
Q ss_pred cccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 176 ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 176 ~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
.+.++|+||-|.+. ..+..+...+.+.|+++|=.|+..-+
T Consensus 90 ~~~~~Dvvf~alp~------------------~~s~~~~~~~~~~G~~VIDlSa~fR~ 129 (381)
T 3hsk_A 90 NFLECDVVFSGLDA------------------DVAGDIEKSFVEAGLAVVSNAKNYRR 129 (381)
T ss_dssp TGGGCSEEEECCCH------------------HHHHHHHHHHHHTTCEEEECCSTTTT
T ss_pred hcccCCEEEECCCh------------------hHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 45689999988751 11234555666788899999987643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00024 Score=69.12 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+++|+|+||+|.||..+++.+...|++|++++++.
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~ 205 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE 205 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence 578999999999999999999999999999999854
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00043 Score=67.14 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=33.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.+++|+|+|++|.||..+++.+...|++|++++++..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~ 205 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG 205 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH
Confidence 5789999999999999999999999999999998643
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0019 Score=58.13 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=50.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~Ag 188 (447)
|+|+|+|+ |.+|+.+++.|.++|++|+++++++.... .+.. ..++.++.+|.++.. +.++|.||-+.+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~-~l~~---~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCE-EFAK---KLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHH-HHHH---HSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH-HHHH---HcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 57999995 99999999999999999999998543221 1111 124677888887652 457899997653
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00021 Score=69.60 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=32.8
Q ss_pred CC--CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCC
Q 013226 114 KS--LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYF 149 (447)
Q Consensus 114 ~~--~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~ 149 (447)
.+ ++|+|+||+|.||..+++.+...|+ +|++++++.
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~ 196 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH 196 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 46 8999999999999999999999999 999999853
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00018 Score=69.19 Aligned_cols=36 Identities=19% Similarity=0.087 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+++|+|+||+|.||..+++.+...|++|++++++.
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~ 175 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA 175 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999999999999999999999999998853
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0047 Score=58.98 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---cccccc--CCCceEEEecccccccccCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHF--GNPRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
+.++|.|+|+ |.+|..++..|+.+|. +|.++|++...... .+.+.. ....+.+.. | ..+++.++|+||.+
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~-~~~a~~~aDvVvi~ 81 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G-EYSDCHDADLVVIC 81 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C-CGGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C-CHHHhCCCCEEEEC
Confidence 4578999998 9999999999998884 89999875321111 111111 112333333 3 25568899999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEE
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 227 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~ 227 (447)
+|... .......+....|......+.+.+.+... .++.+
T Consensus 82 ag~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~ 122 (317)
T 3d0o_A 82 AGAAQ--KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVA 122 (317)
T ss_dssp CCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 98532 22234456778999999999999888764 44443
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0051 Score=59.72 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=58.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCC----------CceEEEeccccccccc-CCCEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGN----------PRFELIRHDVVEPILL-EVDQI 183 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~----------~~v~~~~~D~~~~~~~-~~d~V 183 (447)
++|.|.||+|.+|+.+++.|.+++ .+|+.+.++.......+...... ..+.+...|.. ..+. ++|+|
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DvV 87 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPK-HEEFEDVDIV 87 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTT-SGGGTTCCEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHH-HHhcCCCCEE
Confidence 589999999999999999998875 47877764322221211110000 11222222322 2235 89999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
|-+.+.. .+..++..+.+.|+++|-.|+..
T Consensus 88 ~~atp~~------------------~~~~~a~~~~~aG~~VId~s~~~ 117 (354)
T 1ys4_A 88 FSALPSD------------------LAKKFEPEFAKEGKLIFSNASAY 117 (354)
T ss_dssp EECCCHH------------------HHHHHHHHHHHTTCEEEECCSTT
T ss_pred EECCCch------------------HHHHHHHHHHHCCCEEEECCchh
Confidence 9887511 12345666667888988777764
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00059 Score=64.70 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=51.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
.+.+++++|+|+ |.+|+.++..|++.|. +|++.+|+.+.. +.+...+....-+....+.....+.++|+||++.+..
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka-~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~ 215 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKA-ERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVG 215 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHH-HHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTT
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCC
Confidence 457899999996 8899999999999998 999999864322 2222222110002222233334567899999998754
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0011 Score=61.23 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=65.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCC------------------Ccccccccc----CCCceEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTG------------------KKDNLIHHF----GNPRFELI 168 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~------------------~~~~~~~~~----~~~~v~~~ 168 (447)
.+++++|+|.| .|++|.++++.|++.|. +|+++|++.-. +.+.+...+ ...+++.+
T Consensus 28 ~l~~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 106 (249)
T 1jw9_B 28 ALKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 106 (249)
T ss_dssp HHHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 35678899999 68999999999999997 88999886411 001111111 11234555
Q ss_pred eccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 169 RHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 169 ~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
..++.+ ..+.++|+||.+.. |...-..+.++|++.++.+|+.+....+
T Consensus 107 ~~~~~~~~~~~~~~~~DvVi~~~d-----------------~~~~~~~l~~~~~~~~~p~i~~~~~g~~ 158 (249)
T 1jw9_B 107 NALLDDAELAALIAEHDLVLDCTD-----------------NVAVRNQLNAGCFAAKVPLVSGAAIRME 158 (249)
T ss_dssp CSCCCHHHHHHHHHTSSEEEECCS-----------------SHHHHHHHHHHHHHHTCCEEEEEEEBTE
T ss_pred eccCCHhHHHHHHhCCCEEEEeCC-----------------CHHHHHHHHHHHHHcCCCEEEeeeccce
Confidence 544432 24567999998763 1112234667788888888887655433
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00022 Score=68.76 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+++|+|+||+|.||..+++.+...|++|++++++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~ 180 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 578999999999999999999999999999999853
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0027 Score=61.08 Aligned_cols=92 Identities=18% Similarity=0.099 Sum_probs=57.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEE---EEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVI---VVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASP 192 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~---~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~ 192 (447)
|+|.|.||+|.+|+.+++.|.++++.+. .+... ......+. +....+++.+.|.. .+ ++|+||-|.|.
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~-~~~g~~l~--~~g~~i~v~~~~~~--~~-~~DvV~~a~g~--- 71 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASP-RSAGVRLA--FRGEEIPVEPLPEG--PL-PVDLVLASAGG--- 71 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECG-GGSSCEEE--ETTEEEEEEECCSS--CC-CCSEEEECSHH---
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeecc-ccCCCEEE--EcCceEEEEeCChh--hc-CCCEEEECCCc---
Confidence 4799999999999999999998776433 22211 11111111 11224555555532 24 89999998762
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
..+........+.|+++|-.|+..
T Consensus 72 ---------------~~s~~~a~~~~~~G~~vId~s~~~ 95 (331)
T 2yv3_A 72 ---------------GISRAKALVWAEGGALVVDNSSAW 95 (331)
T ss_dssp ---------------HHHHHHHHHHHHTTCEEEECSSSS
T ss_pred ---------------cchHHHHHHHHHCCCEEEECCCcc
Confidence 112344555567788999898874
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0075 Score=57.72 Aligned_cols=109 Identities=12% Similarity=0.108 Sum_probs=69.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc---cccccc--CCCceEEEe-cccccccccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD---NLIHHF--GNPRFELIR-HDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~-~D~~~~~~~~~d~Vih~A 187 (447)
.++|.|+|+ |.+|..++..|+..|. +|+++|++...... .+.+.. ......+.. .|. +++.++|+||.++
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~--~al~~aD~Vi~a~ 80 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY--DDLAGADVVIVTA 80 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG--GGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH--HHhCCCCEEEEeC
Confidence 468999997 9999999999999998 88888886432211 111110 011222222 343 5688999999999
Q ss_pred cCCCCCCcccC-----hHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 188 CPASPVHYKFN-----PVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 188 g~~~~~~~~~~-----~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
|... ..... ..+....|+.-...+.+.+.+... .++.+|
T Consensus 81 g~p~--k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 81 GFTK--APGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp SCSS--CTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CCCC--CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 8532 21112 345677888888888888777643 454443
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00044 Score=71.01 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=44.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
.+++++++|||| |++|+.++..|++.|++|++++|+.... +.+...++. .+..+ .|+.+.....+|+||||+|..
T Consensus 361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a-~~la~~~~~-~~~~~-~dl~~~~~~~~DilVN~agvg 435 (523)
T 2o7s_A 361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERA-LELAEAIGG-KALSL-TDLDNYHPEDGMVLANTTSMG 435 (523)
T ss_dssp -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHH-HHHHHHTTC--CEET-TTTTTC--CCSEEEEECSSTT
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHcCC-ceeeH-HHhhhccccCceEEEECCCCC
Confidence 356789999998 7999999999999999999999864322 222222211 11111 132211223589999999864
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00026 Score=68.89 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+++|+|+||+|.||..+++.+...|++|++++++.
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~ 197 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ 197 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999999999999999999999999999853
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00038 Score=58.35 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=49.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+++|+|+|+ |.+|+.++..|.+.|++|++.+|+.... +.+....+ .+....+..+..+.++|+||.+.+.
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~-~~~a~~~~---~~~~~~~~~~~~~~~~Divi~at~~ 90 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHV-RAFAEKYE---YEYVLINDIDSLIKNNDVIITATSS 90 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHH-HHHHHHHT---CEEEECSCHHHHHHTCSEEEECSCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHH-HHHHHHhC---CceEeecCHHHHhcCCCEEEEeCCC
Confidence 789999995 9999999999999999988888864322 22222221 3444444445566789999998864
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00073 Score=63.52 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=51.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcccccccc----CCCceEEEecccccccccCCCEEEEe
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHF----GNPRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
.+++++++|+|+ |++|+.++..|.+.|. +|++++|+.+.. +.+...+ ....+.....+-.+..+.+.|+|||+
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a-~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVIna 201 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRA-QALADVINNAVGREAVVGVDARGIEDVIAAADGVVNA 201 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHH-HHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEEC
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEEC
Confidence 467899999996 9999999999999998 799998864322 2221111 11233444433444556679999998
Q ss_pred ccC
Q 013226 187 ACP 189 (447)
Q Consensus 187 Ag~ 189 (447)
...
T Consensus 202 Tp~ 204 (283)
T 3jyo_A 202 TPM 204 (283)
T ss_dssp SST
T ss_pred CCC
Confidence 753
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0095 Score=57.21 Aligned_cols=97 Identities=13% Similarity=0.151 Sum_probs=60.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCC--CCccccc---cccCC-CceEEEec-ccccccc-cCCCEEEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFT--GKKDNLI---HHFGN-PRFELIRH-DVVEPIL-LEVDQIYH 185 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~--~~~~~~~---~~~~~-~~v~~~~~-D~~~~~~-~~~d~Vih 185 (447)
+++|.|+|+||++|+.|++.|.++ ..++..+..+.. .....+. ..+.. .+..+.+. |. ..+ .++|+||-
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~--~~~~~~~Dvvf~ 81 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDI--SEFSPGVDVVFL 81 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSG--GGTCTTCSEEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCH--HHHhcCCCEEEE
Confidence 468999999999999999999985 457877755331 1111111 11111 12333332 22 233 68999998
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
|.+. ..+..+...+.+.|+++|-.|+..
T Consensus 82 a~p~------------------~~s~~~~~~~~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 82 ATAH------------------EVSHDLAPQFLEAGCVVFDLSGAF 109 (337)
T ss_dssp CSCH------------------HHHHHHHHHHHHTTCEEEECSSTT
T ss_pred CCCh------------------HHHHHHHHHHHHCCCEEEEcCCcc
Confidence 7651 112345556667889999999875
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.008 Score=58.40 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=72.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--e---EEEEecCCCCCc-------cccccccCC--CceEEEecccccccccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--S---VIVVDNYFTGKK-------DNLIHHFGN--PRFELIRHDVVEPILLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~---V~~l~r~~~~~~-------~~~~~~~~~--~~v~~~~~D~~~~~~~~ 179 (447)
..++|.|+||+|.||.+++-.|+..+. + |.+.+...+... .++.+.... ..+.. .+-...++.+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i--~~~~y~~~~d 108 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI--GIDPYEVFED 108 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE--ESCHHHHTTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEE--ecCCHHHhCC
Confidence 456899999999999999999988764 2 666544322211 111111110 12222 2223456889
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-C--CeEEEEeC
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTST 229 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g--~r~v~~SS 229 (447)
+|+||-+||.. .....+..+.++.|..-.+.+.+.+.++ + +.++.+|-
T Consensus 109 aDvVVitag~p--rkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 109 VDWALLIGAKP--RGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp CSEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCEEEEcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 99999999853 2233456678999999999999988874 4 36666664
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0017 Score=60.54 Aligned_cols=74 Identities=14% Similarity=0.248 Sum_probs=50.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.+.+++++|+|+ |++|+.++..|.+.|. +|++++|+.... +.+...+....+.....+-... .++|+|||+...
T Consensus 117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a-~~la~~~~~~~~~~~~~~~l~~--~~~DivInaTp~ 191 (272)
T 3pwz_A 117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKA-LALRNELDHSRLRISRYEALEG--QSFDIVVNATSA 191 (272)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHH-HHHHHHHCCTTEEEECSGGGTT--CCCSEEEECSSG
T ss_pred CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHhccCCeeEeeHHHhcc--cCCCEEEECCCC
Confidence 467899999996 8999999999999996 999999864322 2222222212344444333222 679999998643
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0058 Score=59.20 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=59.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccC----------CCceEEEecccccccccCCCEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFG----------NPRFELIRHDVVEPILLEVDQI 183 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~----------~~~v~~~~~D~~~~~~~~~d~V 183 (447)
+++|.|.||+|++|+.+++.|.++.. +|+.+..+.......+..... ...+.+.+.|. ..+.++|+|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~vDvV 81 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNY--EDHKDVDVV 81 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSG--GGGTTCSEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCH--HHhcCCCEE
Confidence 46899999999999999999988754 777775211111111111000 01223333332 234689999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
|-|.+. ..+..+...+.+.|+++|-.|+..
T Consensus 82 f~atp~------------------~~s~~~a~~~~~aG~~VId~s~~~ 111 (350)
T 2ep5_A 82 LSALPN------------------ELAESIELELVKNGKIVVSNASPF 111 (350)
T ss_dssp EECCCH------------------HHHHHHHHHHHHTTCEEEECSSTT
T ss_pred EECCCh------------------HHHHHHHHHHHHCCCEEEECCccc
Confidence 977651 123456777778899988888764
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00041 Score=67.12 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.|++|+|+||+|.||..+++.+...|++|++++++.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~ 190 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK 190 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 678999999999999999999999999999998853
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0014 Score=61.33 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=49.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.+++++++|+|+ |++|+.++..|.+.|. +|++.+|+.+... .+.. .+.....+.....+.+.|+|||+..
T Consensus 114 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~-~la~-----~~~~~~~~~~~~~~~~aDiVInaTp 184 (277)
T 3don_A 114 GIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFN-NWSL-----NINKINLSHAESHLDEFDIIINTTP 184 (277)
T ss_dssp TGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGT-TCCS-----CCEEECHHHHHHTGGGCSEEEECCC
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-HHHH-----hcccccHhhHHHHhcCCCEEEECcc
Confidence 357889999995 8999999999999998 8999998654322 2211 2333333334445677999999864
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0039 Score=60.59 Aligned_cols=231 Identities=13% Similarity=0.161 Sum_probs=115.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccc---cCCCc-eEEEecccccccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHH---FGNPR-FELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~---~~~~~-v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
+.++|.|.||+|.+|+.+++.|.++.. +++.+.++.. ....+... +.... .++...+ +..+.++|+||.|++
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~-~g~~~~~~~~~~~~~v~~dl~~~~--~~~~~~vDvVf~atp 91 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRK-AGQSMESVFPHLRAQKLPTLVSVK--DADFSTVDAVFCCLP 91 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTT-TTSCHHHHCGGGTTSCCCCCBCGG--GCCGGGCSEEEECCC
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchh-cCCCHHHhCchhcCcccccceecc--hhHhcCCCEEEEcCC
Confidence 346899999999999999999998865 8887765422 11111110 11100 1111111 334468999999886
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCC----------CCC-------CC--C---CCCcC
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD----------PLQ-------HP--Q---AETYW 246 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~----------~~~-------~~--~---~e~~~ 246 (447)
... +......+ +.|+++|-.|+..-..+ +.. .+ + +.+..
T Consensus 92 ~~~------------------s~~~a~~~-~aG~~VId~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~n~~~i 152 (359)
T 1xyg_A 92 HGT------------------TQEIIKEL-PTALKIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEILREDI 152 (359)
T ss_dssp TTT------------------HHHHHHTS-CTTCEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHH
T ss_pred chh------------------HHHHHHHH-hCCCEEEECCccccCCchhhhhhhhcCCcCChhhcCCceEECCccCHHHh
Confidence 321 12445566 77888888888642111 000 00 0 10000
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhhCCc---EEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIE---ARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~---~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
....-....++|...-..+-.-+ .+..+++ +.+--...+-|.+.......... . . ...+..+.-+
T Consensus 153 ~~~~iIanpgC~tt~~~~~l~pL---~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~~~~----~-~-~~ni~py~~~--- 220 (359)
T 1xyg_A 153 KKARLVANPGCYPTTIQLPLVPL---LKANLIKHENIIIDAKSGVSGAGRGAKEANLYS----E-I-AEGISSYGVT--- 220 (359)
T ss_dssp HTCSEEECCCHHHHHHHHHHHHH---HHTTCBCSSSCEEEEEEEGGGGCSCCCGGGBHH----H-H-TTCCEECSCS---
T ss_pred ccCCEEECCCcHHHHHHHHHHHH---HHcCCCCCCeEEEEEEEEccccCcccchhhhhH----H-H-hcCeeccccc---
Confidence 00112223367765554443333 3344444 22222233345443211111111 1 1 2223223322
Q ss_pred EccccHHHHHHHHHHHHcCC------------CCC---cEEecCCCccCHHHHHHHHHHHhCCCCcEEecC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD------------HVG---PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRP 379 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~------------~~g---~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 379 (447)
...|..++.+.+-.++... ..| ..++.-.++++..|+.+.+++.+..+..++..+
T Consensus 221 -~h~h~pEi~~~l~~~~~~~~~v~~t~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~y~~~~~V~v~~ 290 (359)
T 1xyg_A 221 -RHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLD 290 (359)
T ss_dssp -CCTHHHHHHHHHHHHHTSCCCCEEECEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCSSEEECC
T ss_pred -ccccHHHHHHHHHHhcCCCCCEEEEEEEecccceEEEEEEEEeCCCCCHHHHHHHHHHhhCCCCCEEEcC
Confidence 1346777665444443321 112 344444567899999999999887666666654
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=64.00 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=46.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEeccccccc---c--cCCCEEEEecc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPI---L--LEVDQIYHLAC 188 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~---~--~~~d~Vih~Ag 188 (447)
+++++|+||+|.||...++.+...|++|++++++.... +... .++... ++.-+.|..+.. . .++|+||+|+|
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~-~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g 242 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQI-ALLK-DIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVT 242 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGH-HHHH-HHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHH-HcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCC
Confidence 47899999999999999998888999999999854322 2222 222211 111112222211 1 36999999987
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0035 Score=58.35 Aligned_cols=95 Identities=20% Similarity=0.342 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEE-ecCCCCC-ccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVV-DNYFTGK-KDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l-~r~~~~~-~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+++++|.|+|++|.+|+.+++.+.+. +.+++.+ +|..... ........+... .+...+-.+..+.++|+||.+..
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~-gv~v~~dl~~ll~~~DVVIDfT~- 82 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQT-GVALTDDIERVCAEADYLIDFTL- 82 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCC-SCBCBCCHHHHHHHCSEEEECSC-
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCC-CceecCCHHHHhcCCCEEEEcCC-
Confidence 34678999999999999999999876 5577764 5542211 111111111111 11112233334557999999862
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEE
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 226 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~ 226 (447)
+ ..+...++.|.++|+.+|.
T Consensus 83 ---------p--------~a~~~~~~~al~~G~~vVi 102 (272)
T 4f3y_A 83 ---------P--------EGTLVHLDAALRHDVKLVI 102 (272)
T ss_dssp ---------H--------HHHHHHHHHHHHHTCEEEE
T ss_pred ---------H--------HHHHHHHHHHHHcCCCEEE
Confidence 1 2234567777888887664
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.012 Score=56.50 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc---cccccc----CCCceEEEecccccccccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD---NLIHHF----GNPRFELIRHDVVEPILLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~---~~~~~~----~~~~v~~~~~D~~~~~~~~~d~Vih 185 (447)
+.++|.|+|+ |.+|..++..|+..|+ +|++.|++.+.... .+.+.. ...++... .|. +++.++|+||-
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~--~al~~aD~VI~ 88 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NNY--EYLQNSDVVII 88 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SCG--GGGTTCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CCH--HHHCCCCEEEE
Confidence 3468999997 9999999999999998 99999986442221 111110 11123321 343 56889999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
++|... .......+....|+.-...+.+.+.+... .++.+|
T Consensus 89 avg~p~--k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 131 (328)
T 2hjr_A 89 TAGVPR--KPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131 (328)
T ss_dssp CCSCCC--CTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred cCCCCC--CCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence 997532 22222334567788888888888777543 444443
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0016 Score=61.06 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=48.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCC-CceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGN-PRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.+.+++++|+|+ |++|+.++..|.+.|. +|++.+|+.+.. +.+...+.. ..+.....+.. ..+.|+|||+...
T Consensus 123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a-~~la~~~~~~~~~~~~~~~~l---~~~aDiIInaTp~ 197 (281)
T 3o8q_A 123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKA-EQLAELVAAYGEVKAQAFEQL---KQSYDVIINSTSA 197 (281)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHH-HHHHHHHGGGSCEEEEEGGGC---CSCEEEEEECSCC
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHH-HHHHHHhhccCCeeEeeHHHh---cCCCCEEEEcCcC
Confidence 457899999996 8999999999999996 999999864332 222211111 12344433222 2578999998753
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.001 Score=63.37 Aligned_cols=78 Identities=6% Similarity=0.062 Sum_probs=51.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCC--CCccccccccC---CCceEEEeccc---ccccccCCC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFT--GKKDNLIHHFG---NPRFELIRHDV---VEPILLEVD 181 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~--~~~~~~~~~~~---~~~v~~~~~D~---~~~~~~~~d 181 (447)
..+++++++|+|+ |++|+.++..|++.|. +|++++|+.. .+.+.+...+. ...+..+..+. ....+.++|
T Consensus 150 ~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD 228 (315)
T 3tnl_A 150 HDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV 228 (315)
T ss_dssp CCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence 3468899999996 8999999999999998 8999998621 11111111111 11244444332 223456899
Q ss_pred EEEEeccC
Q 013226 182 QIYHLACP 189 (447)
Q Consensus 182 ~Vih~Ag~ 189 (447)
+|||+...
T Consensus 229 iIINaTp~ 236 (315)
T 3tnl_A 229 IFTNATGV 236 (315)
T ss_dssp EEEECSST
T ss_pred EEEECccC
Confidence 99998754
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0005 Score=66.89 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEeccccccc----ccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPI----LLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~----~~~~d~Vih~Ag 188 (447)
.+++|+|+||+|.||..+++.+...|++|++++++.... +... .++... +++.+.|..+.. -.++|+||+|+|
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~-~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g 244 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKC-EACE-RLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIG 244 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHH-HHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHH-hcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCC
Confidence 678999999999999999999999999999999854322 1111 122211 111112221111 136999999997
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.01 Score=56.50 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc-c--cccccC-CCceEEEec-ccccccccCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD-N--LIHHFG-NPRFELIRH-DVVEPILLEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~-~--~~~~~~-~~~v~~~~~-D~~~~~~~~~d~Vih~ 186 (447)
+.|+|.|+|+ |.+|..++..|++.|+ +|++++|+...... . +.+... .....+... | ...+.++|+||-+
T Consensus 6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~aD~Vii~ 82 (319)
T 1lld_A 6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD--PEICRDADMVVIT 82 (319)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC--GGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC--HHHhCCCCEEEEC
Confidence 4578999997 9999999999999998 99999986422110 0 111110 001222222 2 2356789999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA 222 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~ 222 (447)
++... .......+....|......+++.+++.+.
T Consensus 83 v~~~~--~~g~~r~~~~~~n~~~~~~~~~~i~~~~~ 116 (319)
T 1lld_A 83 AGPRQ--KPGQSRLELVGATVNILKAIMPNLVKVAP 116 (319)
T ss_dssp CCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 87432 12234456778888888888888776544
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0085 Score=57.16 Aligned_cols=109 Identities=14% Similarity=0.067 Sum_probs=69.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccc---cccc---c-CCCceEEEecccccccccCCCEEEEe
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDN---LIHH---F-GNPRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~---~~~~---~-~~~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
.|+|.|+|+ |.+|..++..|++.|+ +|++++++....... +.+. . ...++... .|. .++.++|+||-+
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~--~a~~~aDiVi~a 79 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-DDY--ADISGSDVVIIT 79 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-SCG--GGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-CCH--HHhCCCCEEEEe
Confidence 468999997 9999999999999998 999999864322211 0000 0 01122221 343 467889999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeC
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST 229 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS 229 (447)
++... .......+....|....+.+++.+.+... .++.+|.
T Consensus 80 vg~p~--~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 80 ASIPG--RPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp CCCSS--CCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCCCC--CCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 98533 22223345566777777788887776543 4555543
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.025 Score=54.35 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=58.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
+++|.|.||||++|..|++.|.++.+ ++..+... ......+. +......+ .+.....+.++|+||-|.+.
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~-~~aG~~~~--~~~~~~~~--~~~~~~~~~~~Dvvf~a~~~-- 73 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASA-RSQGRKLA--FRGQEIEV--EDAETADPSGLDIALFSAGS-- 73 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECT-TTSSCEEE--ETTEEEEE--EETTTSCCTTCSEEEECSCH--
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECc-ccCCCcee--ecCCceEE--EeCCHHHhccCCEEEECCCh--
Confidence 46899999999999999999888754 45555422 11111111 11112222 23333456789999988751
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcc
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 231 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~ 231 (447)
..+......+.+.|+++|-.|+..
T Consensus 74 ----------------~~s~~~a~~~~~~G~~vID~Sa~~ 97 (344)
T 3tz6_A 74 ----------------AMSKVQAPRFAAAGVTVIDNSSAW 97 (344)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEECSSTT
T ss_pred ----------------HHHHHHHHHHHhCCCEEEECCCcc
Confidence 112345556667788999888865
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=62.82 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc---cc--cCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP---IL--LEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~---~~--~~~d~Vih~Ag 188 (447)
.|++|+|+||+|.||..+++.+...|++|++++++.... + ....++...+.-...|..+. .. .++|+||+|+|
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~-~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g 236 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAAT-E-FVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIG 236 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGH-H-HHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-H-HHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCc
Confidence 678999999999999999999999999999999854322 2 22222222211111222111 11 25999999997
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0042 Score=56.00 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=60.1
Q ss_pred CCCCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEE
Q 013226 105 GKVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIY 184 (447)
Q Consensus 105 ~~~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vi 184 (447)
...|....+++++|||+| .|-+|...++.|++.|++|++++.... +++.......++.++..+..+..+.++|.||
T Consensus 21 ~~~Pifl~L~gk~VLVVG-gG~va~~ka~~Ll~~GA~VtVvap~~~---~~l~~l~~~~~i~~i~~~~~~~dL~~adLVI 96 (223)
T 3dfz_A 21 HMYTVMLDLKGRSVLVVG-GGTIATRRIKGFLQEGAAITVVAPTVS---AEINEWEAKGQLRVKRKKVGEEDLLNVFFIV 96 (223)
T ss_dssp -CCEEEECCTTCCEEEEC-CSHHHHHHHHHHGGGCCCEEEECSSCC---HHHHHHHHTTSCEEECSCCCGGGSSSCSEEE
T ss_pred CccccEEEcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCC---HHHHHHHHcCCcEEEECCCCHhHhCCCCEEE
Confidence 346777889999999999 689999999999999999999986422 2232223344678888888777888999999
Q ss_pred Ee
Q 013226 185 HL 186 (447)
Q Consensus 185 h~ 186 (447)
-+
T Consensus 97 aA 98 (223)
T 3dfz_A 97 VA 98 (223)
T ss_dssp EC
T ss_pred EC
Confidence 44
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0009 Score=64.64 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCC-ceEEEeccccccc---c--cCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEPI---L--LEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~---~--~~~d~Vih~A 187 (447)
.|.+|+|+|++|.||..+++.+...|++|++++++.... +.... ++.. .++..+.|..+.. . .++|+||+|+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~~-lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 221 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHT-EELLR-LGAAYVIDTSTAPLYETVMELTNGIGADAAIDSI 221 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTH-HHHHH-HTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHh-CCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECC
Confidence 678999999999999999998888999999999864432 22222 2221 1111112222211 1 3699999999
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
|
T Consensus 222 g 222 (340)
T 3gms_A 222 G 222 (340)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.00068 Score=65.29 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEeccccccc-----ccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPI-----LLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~-----~~~~d~Vih~A 187 (447)
.|++|+|+||+|.||..+++.+...|++|++++++.... + ....++... ++.-+.|..+.. -.++|+||+|+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~-~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~ 225 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKL-K-IAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSV 225 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHH-H-HHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-H-HHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECC
Confidence 678999999999999999999999999999999853322 1 222222211 111112222211 13599999999
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
|
T Consensus 226 g 226 (334)
T 3qwb_A 226 G 226 (334)
T ss_dssp G
T ss_pred C
Confidence 7
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0013 Score=62.31 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCce-EEEe-cccccccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRF-ELIR-HDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~-~D~~~~~~~~~d~Vih~Ag 188 (447)
.|.+|+|+|++|.+|..+++.+...|++|++++++..... ... .++...+ +..+ .|..+ .+.++|+||+ +|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~-~~ga~~~~~~~~~~~~~~-~~~~~d~vid-~g 197 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPL-ALGAEEAATYAEVPERAK-AWGGLDLVLE-VR 197 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH-HHH-HTTCSEEEEGGGHHHHHH-HTTSEEEEEE-CS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHH-hcCCCEEEECCcchhHHH-HhcCceEEEE-CC
Confidence 5789999999999999999999999999999998643322 221 2222111 1111 12222 2367999999 87
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.007 Score=57.86 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=68.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcccc---ccccC-CCceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNL---IHHFG-NPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~---~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
|+|.|+|+ |.+|..++..|++.|+ +|++++++........ .+... .....+...| ..++.++|+||-+++.
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d--~~~~~~aDvViiav~~ 77 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAGV 77 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC--HHHhCCCCEEEEccCC
Confidence 57999997 9999999999999999 9999998643211100 00000 0112222234 3457789999999874
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEE
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 227 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~ 227 (447)
.. .......+....|......+++.+.+... .+|.+
T Consensus 78 ~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~ 115 (319)
T 1a5z_A 78 PQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVV 115 (319)
T ss_dssp CC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Confidence 32 11123445677888888888888877543 44444
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0013 Score=64.07 Aligned_cols=74 Identities=24% Similarity=0.343 Sum_probs=49.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEec--ccccccccCCCEEEEeccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRH--DVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~--D~~~~~~~~~d~Vih~Ag~ 189 (447)
..+++|+|+|+ |.+|+.+++.|...|++|++++|+.... +.+..... ..+..+.. +...+.+.++|+||++++.
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERL-SYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHHHhhC-ceeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 45689999998 9999999999999999999999864322 11111111 11212211 1222345689999999875
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00062 Score=65.36 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCC-ceEEEeccccccc---c--cCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEPI---L--LEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~---~--~~~d~Vih~A 187 (447)
.|++|+|+||+|.||..+++.+...|++|++++++.... +... .++.. .++..+.|..+.. . .++|+||+|+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~-~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 217 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKA-AHAK-ALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGV 217 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHH-HHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHH-HcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECC
Confidence 678999999999999999999988999999999853322 2222 22211 1111112222211 1 3699999999
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
|
T Consensus 218 g 218 (325)
T 3jyn_A 218 G 218 (325)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0045 Score=51.41 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=50.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEecc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLAC 188 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~Ag 188 (447)
.++|+|.|+ |.+|..+++.|.+.|++|+++++++... +.+ ...++..+.+|.+++. +.++|.||-+.+
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~-~~~----~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRV-DEL----RERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHH-HHH----HHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHH-HHH----HHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 357999995 9999999999999999999999864321 111 1235677888887653 346899997764
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.00086 Score=64.87 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+++|+|+|++|.+|..+++.+...|++|++++++.
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~ 201 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE 201 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 578999999999999999999999999999998853
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.015 Score=56.40 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=64.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcccccc-----------------------ccCCCceE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIH-----------------------HFGNPRFE 166 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~-----------------------~~~~~~v~ 166 (447)
..++..+|+|.| .|++|.+++..|++.|. +++++|++.-... ++.. .-...+++
T Consensus 114 ~~L~~~~VlvvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~s-NL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~ 191 (353)
T 3h5n_A 114 DKLKNAKVVILG-CGGIGNHVSVILATSGIGEIILIDNDQIENT-NLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVS 191 (353)
T ss_dssp HHHHTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEEECCBCCGG-GGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEE
T ss_pred HHHhCCeEEEEC-CCHHHHHHHHHHHhCCCCeEEEECCCcCccc-ccccccCCChHHCCChHHHHHHHHHHHHCCCCeEE
Confidence 356778999999 58999999999999997 8888887532111 1100 00122455
Q ss_pred EEeccccccc----ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCc
Q 013226 167 LIRHDVVEPI----LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230 (447)
Q Consensus 167 ~~~~D~~~~~----~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~ 230 (447)
.+..++.+.. +.++|+||.+.. ++.. .-..+-++|.+.++.+|+.+..
T Consensus 192 ~~~~~i~~~~~~~~~~~~DlVvd~~D---------n~~~-------~r~~ln~~c~~~~~p~i~~~~~ 243 (353)
T 3h5n_A 192 EIALNINDYTDLHKVPEADIWVVSAD---------HPFN-------LINWVNKYCVRANQPYINAGYV 243 (353)
T ss_dssp EEECCCCSGGGGGGSCCCSEEEECCC---------CSTT-------HHHHHHHHHHHTTCCEEEEEEE
T ss_pred EeecccCchhhhhHhccCCEEEEecC---------ChHH-------HHHHHHHHHHHhCCCEEEEEEe
Confidence 5555443322 678999998752 1100 1123557888899888877654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.011 Score=56.26 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---ccccccC--CCceEEEecccccccccCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHFG--NPRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~~--~~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
+.++|.|+|+ |.+|..++..|+..|. +|+++|++...... .+.+... ...+.+.. | ...++.++|+||.+
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~-~~~al~~aDvViia 81 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G-DYDDCRDADLVVIC 81 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C-CGGGTTTCSEEEEC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C-cHHHhCCCCEEEEc
Confidence 4578999998 9999999999988774 89999986431111 1111111 11333333 2 23568899999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEE
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 227 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~ 227 (447)
++...... ....+.+..|..-...+.+.+.+... .++.+
T Consensus 82 ~~~~~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~ 122 (316)
T 1ldn_A 82 AGANQKPG--ETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA 122 (316)
T ss_dssp CSCCCCTT--TCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred CCCCCCCC--CCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEe
Confidence 98643222 23345677888888888888887654 44443
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0013 Score=63.65 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCc-eEEEeccc---ccccc--cCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDV---VEPIL--LEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~---~~~~~--~~~d~Vih~ 186 (447)
.+++|+|+|++|.||..+++.+... |++|++++++.... +... .++... ++..+.|. ..... .++|+||++
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~-~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 247 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV-EAAK-RAGADYVINASMQDPLAEIRRITESKGVDAVIDL 247 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH-HHHH-HHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHH-HhCCCEEecCCCccHHHHHHHHhcCCCceEEEEC
Confidence 6789999999999999999999998 99999998753321 1121 222111 11111121 11112 369999999
Q ss_pred cc
Q 013226 187 AC 188 (447)
Q Consensus 187 Ag 188 (447)
+|
T Consensus 248 ~g 249 (347)
T 1jvb_A 248 NN 249 (347)
T ss_dssp CC
T ss_pred CC
Confidence 97
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.044 Score=51.82 Aligned_cols=107 Identities=16% Similarity=0.177 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcccccc--ccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIH--HFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..++|.|+|| |.+|..++..|+.+|. +|+++|+... ....... .....++... .|. .++.++|+||-++|.
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~~~~~~~i~~t-~d~--~~l~~aD~Vi~aag~ 87 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLEIFNLPNVEIS-KDL--SASAHSKVVIFTVNS 87 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHHHTCTTEEEE-SCG--GGGTTCSEEEECCCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHhhhcCCCeEEe-CCH--HHHCCCCEEEEcCCC
Confidence 3478999995 9999999999999998 9999998754 2211111 1222344442 453 568899999999986
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.. ....-.+....|+.-...+.+.+.+... .++.+|
T Consensus 88 ~~---pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~s 125 (303)
T 2i6t_A 88 LG---SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS 125 (303)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS
T ss_pred CC---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 32 1233456778888888888888887653 455544
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0012 Score=64.47 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
.|++|+|+||+|.||..+++.+...|++|++++++
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~ 197 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSS 197 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECC
Confidence 57899999999999999999999999999999885
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0088 Score=55.52 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=46.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+++++|+|+ |+.|+.++..|.+.|.+|++.+|+.++. +.+. ..+ +.....+. +.+.|+|||+...
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka-~~la-~~~---~~~~~~~~----l~~~DiVInaTp~ 182 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGL-DFFQ-RLG---CDCFMEPP----KSAFDLIINATSA 182 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTH-HHHH-HHT---CEEESSCC----SSCCSEEEECCTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHH-HCC---CeEecHHH----hccCCEEEEcccC
Confidence 789999995 9999999999999999999999975432 2222 222 33333222 2279999998754
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.018 Score=54.69 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=71.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc---cccccc--CCCceEEEe-cccccccccCCCEEEEeccC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD---NLIHHF--GNPRFELIR-HDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~-~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+|.|+|+ |.+|..++..|+..|. +|+++|+....... ++.+.. ......+.. .|. .++.++|+||..+|.
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~~ag~ 77 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY--EDMRGSDIVLVTAGI 77 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG--GGGTTCSEEEECCSC
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH--HHhCCCCEEEEeCCC
Confidence 4889997 9999999999988887 79999986432211 111100 011223333 443 578899999999985
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.. .....-.+....|+.-...+.+.+.+... .++.+|
T Consensus 78 ~~--k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (308)
T 2d4a_B 78 GR--KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116 (308)
T ss_dssp CC--CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CC--CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 33 22334456788999999999998887653 566554
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0033 Score=63.12 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
.|++|+|+||+|.||...++.+...|++|++++++
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~ 254 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSS 254 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 67899999999999999999999999999998874
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0035 Score=61.37 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEeccccccc--ccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPI--LLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~--~~~~d~Vih~Ag 188 (447)
.|.+|+|+||+|.||..+++.+...|++|+++++ +.+.+.. ..++... +++-+.|..+.. ..++|+||+++|
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~--~~~~~~~-~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g 257 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS--QDASELV-RKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVG 257 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC--GGGHHHH-HHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC--hHHHHHH-HHcCCCEEEECCchHHHHHHhhcCCCCEEEECCC
Confidence 6789999999999999999988889999998874 2222222 2222211 111112222211 247999999997
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.016 Score=54.99 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=65.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCcccccccc------CCCceEEEecccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKDNLIHHF------GNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~~~~~~~------~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
|+|.|+| +|.+|..++..|++.| ++|++++++..... .+...+ ....+.....|. .++.++|+||-++
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~d~--~~~~~aDvViiav 77 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVK-ADQIDFQDAMANLEAHGNIVINDW--AALADADVVISTL 77 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH-HHHHHHHHHGGGSSSCCEEEESCG--GGGTTCSEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHH-HHHHHHHhhhhhcCCCeEEEeCCH--HHhCCCCEEEEec
Confidence 6899999 8999999999999999 79999998643221 111100 111233323454 4677899999988
Q ss_pred cCCCCCC--cccChHHHHHHHHHHHHHHHHHHHHCCC
Q 013226 188 CPASPVH--YKFNPVKTIKTNVVGTLNMLGLAKRVGA 222 (447)
Q Consensus 188 g~~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~g~ 222 (447)
+...... ......+....|+.....+++.+.+...
T Consensus 78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~ 114 (309)
T 1hyh_A 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF 114 (309)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 7422100 1112234566888888888888877654
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0041 Score=55.80 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=45.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.+|+|.|+| +|.+|+.++..|.+.|++|++.+|+.... +.+.. ..+... | .++.+.++|+||.+..
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~-~~~~~----~g~~~~--~-~~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRT-ARLFP----SAAQVT--F-QEEAVSSPEVIFVAVF 92 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHH-HHHSB----TTSEEE--E-HHHHTTSCSEEEECSC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHH----cCCcee--c-HHHHHhCCCEEEECCC
Confidence 457899999 89999999999999999999998863321 11111 123332 2 2234568999998764
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0026 Score=62.32 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=50.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCC-ceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.+.+++|+|+|+ |.||..+++.+...|.+|++.+++.... +......+.. .......+..++.+.++|+||++++.
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l-~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKL-RQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 467899999997 9999999999999999999999864321 1111111211 11111122233445679999998874
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.03 Score=54.06 Aligned_cols=105 Identities=13% Similarity=0.206 Sum_probs=67.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcc----------c------------cccccCCCceEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKD----------N------------LIHHFGNPRFELI 168 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~----------~------------~~~~~~~~~v~~~ 168 (447)
.++..+|+|.| .|++|.++++.|+..|. +++++|.+.-.... . +...-...++...
T Consensus 33 ~L~~~~VlivG-~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 111 (346)
T 1y8q_A 33 RLRASRVLLVG-LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVD 111 (346)
T ss_dssp HHHTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEE
T ss_pred HHhCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEE
Confidence 45677899999 68999999999999998 78888754211100 0 0000011235555
Q ss_pred ecccc---cccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 169 RHDVV---EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 169 ~~D~~---~~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
..++. +..+.++|+||.+.. |...-..+.++|.+.++.+|..++.+.+|
T Consensus 112 ~~~~~~~~~~~~~~~dvVv~~~d-----------------~~~~r~~ln~~~~~~~ip~i~~~~~G~~G 163 (346)
T 1y8q_A 112 TEDIEKKPESFFTQFDAVCLTCC-----------------SRDVIVKVDQICHKNSIKFFTGDVFGYHG 163 (346)
T ss_dssp CSCGGGCCHHHHTTCSEEEEESC-----------------CHHHHHHHHHHHHHTTCEEEEEEEEBTEE
T ss_pred ecccCcchHHHhcCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEeecccEE
Confidence 55542 334567999998742 22333456778888888999887777655
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.003 Score=61.61 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEecccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.|.+|+|+|+ |.||..+++.+...|++|++++++..... .....++... ++..+.|.......++|+||+++|.
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~-~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~ 261 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKE-EALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSA 261 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHH-HHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCc
Confidence 5789999995 99999999999889999999988643221 1121222211 1111111122223479999999973
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.016 Score=52.93 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=27.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDN 147 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r 147 (447)
|+|.|+|++|.+|+.+++.+.+. +++|+.+..
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d 33 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELD 33 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEc
Confidence 57999999999999999999876 889887654
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0028 Score=60.30 Aligned_cols=77 Identities=8% Similarity=-0.003 Sum_probs=49.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCC--CccccccccC---CCceEEEecccc---cccccCCCE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTG--KKDNLIHHFG---NPRFELIRHDVV---EPILLEVDQ 182 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~--~~~~~~~~~~---~~~v~~~~~D~~---~~~~~~~d~ 182 (447)
...+++++|+|+ |++|+.++..|.+.|. +|++++|+... +.+.+...+. ...+.....+-. ...+.++|+
T Consensus 145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~Di 223 (312)
T 3t4e_A 145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADI 223 (312)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceE
Confidence 467899999996 9999999999999998 89999986221 1111111111 112333333322 234567999
Q ss_pred EEEeccC
Q 013226 183 IYHLACP 189 (447)
Q Consensus 183 Vih~Ag~ 189 (447)
|||+...
T Consensus 224 IINaTp~ 230 (312)
T 3t4e_A 224 LTNGTKV 230 (312)
T ss_dssp EEECSST
T ss_pred EEECCcC
Confidence 9998754
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.011 Score=53.46 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 187 (447)
..++|+|+|+ |.+|+.+++.|.+.|+ |+++++++... +.+ . .++.++.+|.+++. +.++|.||.+.
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~-~~~----~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRK-KVL----R-SGANFVHGDPTRVSDLEKANVRGARAVIVDL 79 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHH-HHH----H-TTCEEEESCTTCHHHHHHTTCTTCSEEEECC
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHH-HHH----h-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC
Confidence 3468999996 9999999999999999 99998753221 111 1 35788888887652 55789999765
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
+
T Consensus 80 ~ 80 (234)
T 2aef_A 80 E 80 (234)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0065 Score=56.85 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=48.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
...+++++|+|+ |+.|+.++..|.+.|. +|++++|+.+.. +.+.. .+.....+..+. + +.|+|||+...
T Consensus 119 ~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka-~~La~-----~~~~~~~~~l~~-l-~~DivInaTp~ 188 (282)
T 3fbt_A 119 EIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKT-SEIYG-----EFKVISYDELSN-L-KGDVIINCTPK 188 (282)
T ss_dssp CCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHH-HHHCT-----TSEEEEHHHHTT-C-CCSEEEECSST
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHH-----hcCcccHHHHHh-c-cCCEEEECCcc
Confidence 457899999995 8999999999999998 899999864322 22221 122233332333 4 89999998754
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0041 Score=60.59 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=47.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC---CCCccccccccCCCceEEEec-cccccc---ccCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF---TGKKDNLIHHFGNPRFELIRH-DVVEPI---LLEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~---~~~~~~~~~~~~~~~v~~~~~-D~~~~~---~~~~d~Vih 185 (447)
++|++|+|+|+ |.||..+++.+...|++|++++++. ... +....++ .+.++. |+.+.. -.++|+||+
T Consensus 179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~--~~~~~~g---a~~v~~~~~~~~~~~~~~~~d~vid 252 (366)
T 2cdc_A 179 LNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQ--TVIEETK---TNYYNSSNGYDKLKDSVGKFDVIID 252 (366)
T ss_dssp STTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHH--HHHHHHT---CEEEECTTCSHHHHHHHCCEEEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHH--HHHHHhC---CceechHHHHHHHHHhCCCCCEEEE
Confidence 45889999999 9999999999988999999999864 211 1111222 232211 222111 146999999
Q ss_pred eccC
Q 013226 186 LACP 189 (447)
Q Consensus 186 ~Ag~ 189 (447)
++|.
T Consensus 253 ~~g~ 256 (366)
T 2cdc_A 253 ATGA 256 (366)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9973
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.017 Score=54.19 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=32.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYF 149 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~ 149 (447)
..++..+|+|.| .|++|.+++..|++.|. +++++|.+.
T Consensus 32 ~kL~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 32 EKIRTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp CGGGGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHhCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 456778999999 79999999999999997 888888753
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.022 Score=57.13 Aligned_cols=76 Identities=14% Similarity=0.036 Sum_probs=52.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccC-CCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLE-VDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-~d~Vih~Ag~ 189 (447)
.+++|+|+|.|. |..|..+++.|.++|++|.+.|+......+ ....+....+.+..+...+..+.+ +|.||...|+
T Consensus 6 ~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~-~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi 82 (451)
T 3lk7_A 6 TFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENP-TAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGI 82 (451)
T ss_dssp TTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCH-HHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTS
T ss_pred hcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCCh-HHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcC
Confidence 457899999997 889999999999999999999985421111 111222235566555444444455 8999988775
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.038 Score=50.77 Aligned_cols=105 Identities=10% Similarity=0.145 Sum_probs=63.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc----c------c--------ccccc----CCCceEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK----D------N--------LIHHF----GNPRFELI 168 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~----~------~--------~~~~~----~~~~v~~~ 168 (447)
.+++++|+|.|+ |++|.++++.|++.|. +++++|.+.-... + . +.+.+ ...+++.+
T Consensus 25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 103 (251)
T 1zud_1 25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL 103 (251)
T ss_dssp HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 456789999995 7799999999999997 7788876531100 0 0 00000 11234444
Q ss_pred eccccc----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 169 RHDVVE----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 169 ~~D~~~----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
..++.+ ..+.++|+||++.. |...-..+.++|.+.++.+|+.+....+|
T Consensus 104 ~~~~~~~~~~~~~~~~DvVi~~~d-----------------~~~~r~~l~~~~~~~~~p~i~~~~~g~~G 156 (251)
T 1zud_1 104 QQRLTGEALKDAVARADVVLDCTD-----------------NMATRQEINAACVALNTPLITASAVGFGG 156 (251)
T ss_dssp CSCCCHHHHHHHHHHCSEEEECCS-----------------SHHHHHHHHHHHHHTTCCEEEEEEEBTEE
T ss_pred eccCCHHHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCEEEEeccccce
Confidence 433332 23456899998752 11222356677888888888877655443
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0056 Score=59.52 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEec-ccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRH-DVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~-D~~~~~~~~~d~Vih~Ag~ 189 (447)
.|.+|+|+|+ |.+|..+++.+...|++|++++++.... +... .++... +++.+. |..+....++|+||+++|.
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~-~~~~-~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~ 253 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKR-EDAM-KMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 253 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTH-HHHH-HHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHH-HcCCCEEEcCcCchHHHHHhhcCCCEEEECCCC
Confidence 5789999999 9999999988888899999999864432 2222 222221 111112 3222222579999999974
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.028 Score=52.55 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEE-ecCCCC-CccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVV-DNYFTG-KKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l-~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
++++|.|.|++|-+|+.+++.+.+. +.+++++ ++.... .........+.....+.-.+-.+..+.++|+||.+..
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~-- 97 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ-- 97 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--
Confidence 3468999999999999999998865 5677665 443221 1111111111111111122333445568999998752
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS 229 (447)
+ ..+...++.|.++|+.+|.-++
T Consensus 98 --------p--------~a~~~~~~~~l~~Gv~vViGTT 120 (288)
T 3ijp_A 98 --------P--------QASVLYANYAAQKSLIHIIGTT 120 (288)
T ss_dssp --------H--------HHHHHHHHHHHHHTCEEEECCC
T ss_pred --------H--------HHHHHHHHHHHHcCCCEEEECC
Confidence 1 2234567778888887774443
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0042 Score=60.01 Aligned_cols=36 Identities=28% Similarity=0.256 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.|.+|+|+||+|.||...++.+...|++|++++++.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~ 185 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN 185 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 678999999999999999999988999999998753
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0029 Score=60.44 Aligned_cols=72 Identities=21% Similarity=0.322 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEecccccccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.|.+|+|+||+|.+|...++.+...|++|+++++.. + .+....++... +++.+.|...+.+.++|+||+++|
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~--~-~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g 224 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR--N-HAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVG 224 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH--H-HHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc--h-HHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCC
Confidence 678999999999999999999988999999887532 2 22222233221 222222212234468999999987
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0046 Score=61.22 Aligned_cols=72 Identities=25% Similarity=0.389 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..+++|+|+|+ |.+|+.+++.|...|. +|++++|+.... +.+...++ .+.+..+-....+.++|+||.+.+.
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra-~~la~~~g---~~~~~~~~l~~~l~~aDvVi~at~~ 237 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERA-VELARDLG---GEAVRFDELVDHLARSDVVVSATAA 237 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHH-HHHHHHHT---CEECCGGGHHHHHHTCSEEEECCSS
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHcC---CceecHHhHHHHhcCCCEEEEccCC
Confidence 57899999996 9999999999999998 899998853321 12222222 2233333333455689999999763
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.02 Score=53.17 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=46.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..+.|++++|+|.++.+|+.++..|+++|++|+++.+... | +.+.+...|+||...|.
T Consensus 156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~--------------------~-L~~~~~~ADIVI~Avg~ 213 (285)
T 3p2o_A 156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK--------------------D-LSLYTRQADLIIVAAGC 213 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------------C-HHHHHTTCSEEEECSSC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCch--------------------h-HHHHhhcCCEEEECCCC
Confidence 4579999999999999999999999999999999876321 1 12345678888888773
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.025 Score=54.96 Aligned_cols=91 Identities=19% Similarity=0.111 Sum_probs=51.6
Q ss_pred CeEEEEcCCChhHHHHHHH-HHhCCC---eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDR-LMDRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~-L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
++|.|.||+|++|+.+++. |.++++ .++.+..+.... .+. ......+.+.+.+-. ..+.++|+||-|.|.
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~-~~~g~~i~~~~~~~~-~~~~~~DvVf~a~g~-- 75 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAP-SFGGTTGTLQDAFDL-EALKALDIIVTCQGG-- 75 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCC-GGGTCCCBCEETTCH-HHHHTCSEEEECSCH--
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--Ccc-ccCCCceEEEecCCh-HHhcCCCEEEECCCc--
Confidence 6899999999999999994 554543 555555432211 111 111122333333211 124689999988761
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~S 228 (447)
..+......+.+.|++.+.++
T Consensus 76 ----------------~~s~~~a~~~~~~G~k~vVID 96 (367)
T 1t4b_A 76 ----------------DYTNEIYPKLRESGWQGYWID 96 (367)
T ss_dssp ----------------HHHHHHHHHHHHTTCCCEEEE
T ss_pred ----------------hhHHHHHHHHHHCCCCEEEEc
Confidence 223455666677887433333
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.02 Score=55.44 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=57.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccC------C----CceEEEecccccccccCCCEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFG------N----PRFELIRHDVVEPILLEVDQI 183 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~------~----~~v~~~~~D~~~~~~~~~d~V 183 (447)
.++|.|.||||++|..|++.|.++.+ ++..+..+.. ....+..... . .+..+...| ...+.++|+|
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s-aGk~~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDvv 83 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS-VGKPYGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDII 83 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT-TTSBHHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh-cCCChhHhcccccccccccccccceEEeCC--HHHhcCCCEE
Confidence 45799999999999999998877653 6666643211 1111111100 0 012222222 2235689999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccc
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 232 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v 232 (447)
|-|.+... +..+...+.+.|+++|-.|+..-
T Consensus 84 f~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~R 114 (359)
T 4dpl_A 84 FSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDHR 114 (359)
T ss_dssp EECCCTTT------------------HHHHHHHHHHTTCEEEECSSTTT
T ss_pred EECCChHH------------------HHHHHHHHHHCCCEEEEcCCCcc
Confidence 98876211 12345555677899999999763
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.02 Score=55.44 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=57.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccC------C----CceEEEecccccccccCCCEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFG------N----PRFELIRHDVVEPILLEVDQI 183 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~------~----~~v~~~~~D~~~~~~~~~d~V 183 (447)
.++|.|.||||++|..|++.|.++.+ ++..+..+.. ....+..... . .+..+...| ...+.++|+|
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s-aGk~~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDvv 83 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS-VGKPYGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDII 83 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT-TTSBHHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh-cCCChhHhcccccccccccccccceEEeCC--HHHhcCCCEE
Confidence 45799999999999999998877653 6666643211 1111111100 0 012222222 2235689999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccc
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 232 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v 232 (447)
|-|.+... +..+...+.+.|+++|-.|+..-
T Consensus 84 f~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~R 114 (359)
T 4dpk_A 84 FSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDHR 114 (359)
T ss_dssp EECCCTTT------------------HHHHHHHHHHTTCEEEECSSTTT
T ss_pred EECCChHH------------------HHHHHHHHHHCCCEEEEcCCCcc
Confidence 98876211 12345555677899999999763
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.017 Score=53.60 Aligned_cols=41 Identities=34% Similarity=0.417 Sum_probs=36.4
Q ss_pred CCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 107 VPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 107 ~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
.|....+++|+|+|+| .|-+|...++.|++.|++|++++..
T Consensus 5 lpl~~~l~~k~VLVVG-gG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 5 LQLAHQLKDKRILLIG-GGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp EEEEECCTTCEEEEEE-ESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeEEEEcCCCEEEEEC-CcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4666778999999999 7889999999999999999999864
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.012 Score=54.15 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=47.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.++ +++|.| +|+.|+.++..|++.|. +|++.+|+.... +.+.. .+.....+...+.+.++|+|||+..
T Consensus 107 ~~~-~vliiG-aGg~a~ai~~~L~~~G~~~I~v~nR~~~ka-~~la~-----~~~~~~~~~~~~~~~~aDiVInatp 175 (253)
T 3u62_A 107 VKE-PVVVVG-AGGAARAVIYALLQMGVKDIWVVNRTIERA-KALDF-----PVKIFSLDQLDEVVKKAKSLFNTTS 175 (253)
T ss_dssp CCS-SEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESCHHHH-HTCCS-----SCEEEEGGGHHHHHHTCSEEEECSS
T ss_pred CCC-eEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHH-----HcccCCHHHHHhhhcCCCEEEECCC
Confidence 466 899999 59999999999999998 899999864322 22221 1122233333445678999999874
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.015 Score=54.86 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=51.5
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.+++++|.| .|.+|+.+++.|...|.+|++.+|+.... +.... . .++.+..+..++.+.++|+||.+..
T Consensus 153 ~~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~d~~~~~~-~~~~~-~---g~~~~~~~~l~~~l~~aDvVi~~~p 224 (300)
T 2rir_A 153 YTIHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHL-ARITE-M---GLVPFHTDELKEHVKDIDICINTIP 224 (300)
T ss_dssp SCSTTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHH-T---TCEEEEGGGHHHHSTTCSEEEECCS
T ss_pred CCCCCCEEEEEc-ccHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHH-C---CCeEEchhhHHHHhhCCCEEEECCC
Confidence 457899999999 59999999999999999999999864321 11111 1 2333333444556778999999875
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.014 Score=54.71 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=45.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
+|+|.|.|++|.+|..++..|.+.|++|++.+|+.... +.+.. . .+.. .| ....+.++|+||-+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~-~~~~~-~---g~~~--~~-~~~~~~~aDvVi~av 75 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGR-DRLQG-M---GIPL--TD-GDGWIDEADVVVLAL 75 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHH-HHHHH-T---TCCC--CC-SSGGGGTCSEEEECS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHHh-c---CCCc--CC-HHHHhcCCCEEEEcC
Confidence 46899999989999999999999999999998853321 11111 1 1211 12 234566899999876
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.022 Score=53.37 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=47.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..+.|++++|.|.++-+|+.++..|++.|++|+++.|+.. .+. ....+...|+||...|.
T Consensus 161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~----~l~---------------l~~~~~~ADIVI~Avg~ 220 (300)
T 4a26_A 161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS----TED---------------MIDYLRTADIVIAAMGQ 220 (300)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC----HHH---------------HHHHHHTCSEEEECSCC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC----Cch---------------hhhhhccCCEEEECCCC
Confidence 3579999999999999999999999999999999876321 100 12446678999998874
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.019 Score=54.46 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=52.0
Q ss_pred ccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEE--Ee-c--ccccccccCCCEE
Q 013226 109 LGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFEL--IR-H--DVVEPILLEVDQI 183 (447)
Q Consensus 109 ~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~--~~-~--D~~~~~~~~~d~V 183 (447)
.+..+.|++++|.|++.-+|+.+++.|++.|.+|++++|+.....+.. ..+....... +. . +-..+.+.+.|+|
T Consensus 171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra-~~la~~~~~~t~~~~t~~~~L~e~l~~ADIV 249 (320)
T 1edz_A 171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRG-ESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV 249 (320)
T ss_dssp TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESC-CCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHH-HHHhhhcccccccccccHhHHHHHhccCCEE
Confidence 334678999999998888999999999999999999987522111111 0111111111 11 1 3344556779999
Q ss_pred EEeccC
Q 013226 184 YHLACP 189 (447)
Q Consensus 184 ih~Ag~ 189 (447)
|.+.|.
T Consensus 250 IsAtg~ 255 (320)
T 1edz_A 250 ITGVPS 255 (320)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 998874
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0043 Score=59.78 Aligned_cols=72 Identities=17% Similarity=0.062 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEecccccc---cccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEP---ILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~---~~~~~d~Vih~Ag 188 (447)
.+++|+|+|+ |.||..+++.+...|++|++++++.... +... .++... +++.+.|+.+. ...++|+||+++|
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~-~~~~-~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g 239 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKL-ELAK-ELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV 239 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHH-HHHH-HTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHH-HCCCCEEecCCCccHHHHHHHHhCCCCEEEECCC
Confidence 5789999999 7799999999999999999998753322 1111 222211 11111121111 1147999999987
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.079 Score=50.83 Aligned_cols=67 Identities=25% Similarity=0.224 Sum_probs=49.7
Q ss_pred ccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 109 LGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 109 ~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.+..+.||+|.|.| .|-||+.+++.|...|.+|++.+|...... .+ ...+..++.+.++|+|+.+..
T Consensus 165 ~~~~l~gktiGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~----------~~--~~~~sl~ell~~aDvVil~vP 231 (340)
T 4dgs_A 165 LGHSPKGKRIGVLG-LGQIGRALASRAEAFGMSVRYWNRSTLSGV----------DW--IAHQSPVDLARDSDVLAVCVA 231 (340)
T ss_dssp CCCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCTTS----------CC--EECSSHHHHHHTCSEEEECC-
T ss_pred ccccccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCccccc----------Cc--eecCCHHHHHhcCCEEEEeCC
Confidence 34678999999999 799999999999999999999988543210 11 122344556778999997763
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.019 Score=53.59 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=48.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.+.+++|+|.| +|.+|+.++..|.+.|++|++.+|+.+.. +.+.... .+.... | ..+.+.++|+||++...
T Consensus 126 ~~~~~~v~iiG-aG~~g~aia~~L~~~g~~V~v~~r~~~~~-~~l~~~~---g~~~~~-~-~~~~~~~aDiVi~atp~ 196 (275)
T 2hk9_A 126 EVKEKSILVLG-AGGASRAVIYALVKEGAKVFLWNRTKEKA-IKLAQKF---PLEVVN-S-PEEVIDKVQVIVNTTSV 196 (275)
T ss_dssp TGGGSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSHHHH-HHHTTTS---CEEECS-C-GGGTGGGCSEEEECSST
T ss_pred CcCCCEEEEEC-chHHHHHHHHHHHHcCCEEEEEECCHHHH-HHHHHHc---CCeeeh-h-HHhhhcCCCEEEEeCCC
Confidence 35678999999 59999999999999999999988863321 2221111 233221 2 23455679999998864
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0043 Score=59.92 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc---c--cCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI---L--LEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~---~--~~~d~Vih~Ag 188 (447)
.|.+|||+||+|.||..+++.+...|++|+++ ++.. +.+.. ..++...++ ...|..+.. . .++|+||+++|
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~-~~~~~-~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~vid~~g 225 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGS-DLEYV-RDLGATPID-ASREPEDYAAEHTAGQGFDLVYDTLG 225 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHH-HHHHH-HHHTSEEEE-TTSCHHHHHHHHHTTSCEEEEEESSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHH-HHHHH-HHcCCCEec-cCCCHHHHHHHHhcCCCceEEEECCC
Confidence 67899999999999999999999999999998 4322 22222 222221122 111111111 1 36999999987
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.024 Score=54.64 Aligned_cols=69 Identities=25% Similarity=0.169 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.|.+|+|+|+ |.||...++.+...|++|++++++.... + ....++...+- .|. +....++|+||+++|.
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~-~~~~lGa~~v~---~~~-~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKK-Q-DALSMGVKHFY---TDP-KQCKEELDFIISTIPT 244 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTH-H-HHHHTTCSEEE---SSG-GGCCSCEEEEEECCCS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHH-H-HHHhcCCCeec---CCH-HHHhcCCCEEEECCCc
Confidence 6789999996 9999999998888999999998764332 2 22223322222 221 1112279999999873
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.041 Score=48.95 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=30.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
...+|+|.|.| .|.+|..++..|.+.|++|++.+|+
T Consensus 16 ~~~~~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~ 51 (209)
T 2raf_A 16 YFQGMEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSK 51 (209)
T ss_dssp ----CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35678899999 8999999999999999999999875
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0096 Score=59.01 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 187 (447)
.+++|+|+|. |-+|+.+++.|.+.|++|+++++++... +.+ ....+.++.+|.+++. +.++|.||-+.
T Consensus 3 ~~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v-~~~----~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~ 76 (413)
T 3l9w_A 3 HGMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHI-ETL----RKFGMKVFYGDATRMDLLESAGAAKAEVLINAI 76 (413)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHH-HHH----HHTTCCCEESCTTCHHHHHHTTTTTCSEEEECC
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHH-HHH----HhCCCeEEEcCCCCHHHHHhcCCCccCEEEECC
Confidence 3467999994 9999999999999999999999864321 111 1235667888887763 35689998765
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
+
T Consensus 77 ~ 77 (413)
T 3l9w_A 77 D 77 (413)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.018 Score=57.78 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=46.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.+.||+++|||+. .||+.+++.|.+.|++|++.++++....+... ..++... .+..+..+|+|+.+.|
T Consensus 262 ~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~-----~g~dv~~---lee~~~~aDvVi~atG 329 (488)
T 3ond_A 262 MIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPICALQATM-----EGLQVLT---LEDVVSEADIFVTTTG 329 (488)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----TTCEECC---GGGTTTTCSEEEECSS
T ss_pred cccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----hCCccCC---HHHHHHhcCEEEeCCC
Confidence 4689999999965 99999999999999999999875322111111 1122221 2345567899997765
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.08 Score=50.55 Aligned_cols=72 Identities=11% Similarity=-0.042 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCChhHHH-HHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc-cCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSH-LVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL-LEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~-l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~Vih~Ag~ 189 (447)
.+|+|.|.| -|..|.. +++.|.++|++|.+.|+...... ...+....+.+..+.-.+... .++|.||...|+
T Consensus 3 ~~~~i~~iG-iGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~---~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi 76 (326)
T 3eag_A 3 AMKHIHIIG-IGGTFMGGLAAIAKEAGFEVSGCDAKMYPPM---STQLEALGIDVYEGFDAAQLDEFKADVYVIGNVA 76 (326)
T ss_dssp CCCEEEEES-CCSHHHHHHHHHHHHTTCEEEEEESSCCTTH---HHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTC
T ss_pred CCcEEEEEE-ECHHHHHHHHHHHHhCCCEEEEEcCCCCcHH---HHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCc
Confidence 467899999 6788885 99999999999999998643211 111222245555443333333 468999988775
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.085 Score=52.90 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=67.9
Q ss_pred CCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEe
Q 013226 107 VPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 107 ~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
.|....+++|+|+|.| .|-+|...++.|++.|++|++++.... +.+.......++.++..+..+..+.++|.||-+
T Consensus 4 ~P~~~~l~~~~vlVvG-gG~va~~k~~~L~~~ga~V~vi~~~~~---~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~a 79 (457)
T 1pjq_A 4 LPIFCQLRDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFI---PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAA 79 (457)
T ss_dssp EEEEECCBTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCC---HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEEC
T ss_pred eeeEEECCCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEcCCCC---HHHHHHHhcCCEEEEECCCCccccCCccEEEEc
Confidence 3555678899999999 788999999999999999999986322 223222233467888888777778889998864
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCe
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR 223 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r 223 (447)
-+ ++ .+|. .+.+.|++.|+.
T Consensus 80 t~---------~~----~~n~----~i~~~a~~~~i~ 99 (457)
T 1pjq_A 80 TD---------DD----TVNQ----RVSDAAESRRIF 99 (457)
T ss_dssp CS---------CH----HHHH----HHHHHHHHTTCE
T ss_pred CC---------CH----HHHH----HHHHHHHHcCCE
Confidence 32 11 1232 567778877643
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.029 Score=52.91 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
.+++|.|.||.|.+|..++..|.+.|++|++++|+... | ....+.++|+||-+.
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------------~-~~~~~~~aDvVilav 73 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------------V-AESILANADVVIVSV 73 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------------G-HHHHHTTCSEEEECS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------------C-HHHHhcCCCEEEEeC
Confidence 35689999999999999999999999999999875321 1 123456789888765
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.036 Score=51.48 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=46.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..+.|++++|.|.++-+|+.++..|++.|++|+++.++.. | +...+...|+||...|.
T Consensus 157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~--------------------~-L~~~~~~ADIVI~Avg~ 214 (285)
T 3l07_A 157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT--------------------D-LKSHTTKADILIVAVGK 214 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------------S-HHHHHTTCSEEEECCCC
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch--------------------h-HHHhcccCCEEEECCCC
Confidence 3578999999999999999999999999999998875311 1 12345678999988873
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0092 Score=57.90 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEecccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.|.+|+|+|+ |.||...++.+...|++|++++++.... +...+.++... ++.-+.|...+...++|+||+++|.
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~-~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~ 254 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKR-EEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPV 254 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHH-HHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCC
Confidence 5789999995 9999999988888899999998864322 11221222211 1111111122223479999999973
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.033 Score=51.71 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=45.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..+.|++++|.|.++.+|+.++..|++.|++|+++.++.. | +...+...|+||...|.
T Consensus 157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~--------------------~-L~~~~~~ADIVI~Avg~ 214 (286)
T 4a5o_A 157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTR--------------------D-LADHVSRADLVVVAAGK 214 (286)
T ss_dssp CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCS--------------------C-HHHHHHTCSEEEECCCC
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCc--------------------C-HHHHhccCCEEEECCCC
Confidence 4578999999999999999999999999999999876321 1 12345668888888763
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0046 Score=59.80 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~ 148 (447)
.|.+|+|+|+ |.||..+++.+...|+ +|++++++
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~ 201 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPS 201 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6788999999 9999999999888999 99999885
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.022 Score=53.62 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=51.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.+++|+|.| .|.||+.+++.|...|.+|++.+|+.... +... . ..++.+..+..++.+.++|+|+.+..
T Consensus 151 ~~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~-~~~~-~---~g~~~~~~~~l~~~l~~aDvVi~~~p 222 (293)
T 3d4o_A 151 FTIHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLL-ARIA-E---MGMEPFHISKAAQELRDVDVCINTIP 222 (293)
T ss_dssp SCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHH-H---TTSEEEEGGGHHHHTTTCSEEEECCS
T ss_pred CCCCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHH-H---CCCeecChhhHHHHhcCCCEEEECCC
Confidence 356899999999 79999999999999999999999864321 1111 1 12334433444556778999998874
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.011 Score=57.60 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEecccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.|.+|+|+|+ |.+|...++.+...|++|++++++.... +... .++... ++..+.|..+....++|+||+++|.
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~-~~a~-~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~ 267 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAK-ALGADEVVNSRNADEMAAHLKSFDFILNTVAA 267 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHH-HHTCSEEEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHH-HcCCcEEeccccHHHHHHhhcCCCEEEECCCC
Confidence 5788999997 8899999998888999999998754322 2222 222211 1111112222223579999999873
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.024 Score=53.02 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=31.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.++|.|.| +|.+|..++..|++.|++|++.+++..
T Consensus 4 ~~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (283)
T 4e12_A 4 ITNVTVLG-TGVLGSQIAFQTAFHGFAVTAYDINTD 38 (283)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899998 699999999999999999999998643
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.13 Score=51.70 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CC-eEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDR-GD-SVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~-G~-~V~~l~r~~~ 150 (447)
..|+|.|.| .|++|..++..|++. |+ +|++++++..
T Consensus 17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 457899998 899999999999999 99 9999999765
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.097 Score=49.90 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=51.1
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
...+.||+|.|.| .|-||+.+++.|...|.+|++.+|+..... .. ......+..++.+.++|+|+.+..
T Consensus 132 ~~~l~gktvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-~~--------~~~~~~~~l~ell~~aDvV~l~lP 200 (324)
T 3evt_A 132 TSTLTGQQLLIYG-TGQIGQSLAAKASALGMHVIGVNTTGHPAD-HF--------HETVAFTATADALATANFIVNALP 200 (324)
T ss_dssp CCCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSCCCCT-TC--------SEEEEGGGCHHHHHHCSEEEECCC
T ss_pred CccccCCeEEEEC-cCHHHHHHHHHHHhCCCEEEEECCCcchhH-hH--------hhccccCCHHHHHhhCCEEEEcCC
Confidence 3568899999999 899999999999999999999998643221 11 111334445566778999997764
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.014 Score=55.72 Aligned_cols=70 Identities=24% Similarity=0.217 Sum_probs=43.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEecc--ccccc-ccCCCEEEEecc
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHD--VVEPI-LLEVDQIYHLAC 188 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D--~~~~~-~~~~d~Vih~Ag 188 (447)
+|+|+|++|.+|...++.+...|++|++++++.... +... .++... ++.-+.| ..... -.++|+||+++|
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~-~~~~-~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g 225 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH-DYLR-VLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG 225 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH-HHHH-HTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHH-HcCCcEEEecCCcHHHHHHHhcCCcccEEEECCc
Confidence 699999999999999998888999999999864322 2222 222211 1211111 11111 135899999987
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.028 Score=51.91 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=44.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+.|++++|.|+++-+|+.++..|++.|++|+++.++.. -..+.+...|+||...|.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~---------------------~L~~~~~~ADIVI~Avg~ 203 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTK---------------------DIGSMTRSSKIVVVAVGR 203 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------CHHHHHHHSSEEEECSSC
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcc---------------------cHHHhhccCCEEEECCCC
Confidence 68999999999999999999999999999999876311 112334567888887764
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.057 Score=53.85 Aligned_cols=34 Identities=41% Similarity=0.540 Sum_probs=30.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
|+|.|.| +|++|..++..|++.|++|++++|+..
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~ 34 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSST 34 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 5799998 899999999999999999999998643
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.067 Score=58.69 Aligned_cols=106 Identities=12% Similarity=0.171 Sum_probs=69.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc----------cc--------ccccc----CCCceEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK----------DN--------LIHHF----GNPRFELI 168 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~----------~~--------~~~~~----~~~~v~~~ 168 (447)
.+...+|+|.| .|++|.++++.|+..|. +++++|.+.-... +. ....+ ....+...
T Consensus 24 rL~~s~VlIvG-~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~ 102 (1015)
T 3cmm_A 24 KMQTSNVLILG-LKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVL 102 (1015)
T ss_dssp HHTTCEEEEEC-CSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEEC
T ss_pred HHhcCEEEEEC-CChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEe
Confidence 46778999999 68999999999999998 7888876421110 00 00000 11245555
Q ss_pred ecccccccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 169 RHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 169 ~~D~~~~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
..++.+..+.++|+||.+.. .|+..-..+.++|.+.++.+|..++.+.+|
T Consensus 103 ~~~l~~~~l~~~DvVv~~~d----------------~~~~~r~~ln~~c~~~~iplI~~~~~G~~G 152 (1015)
T 3cmm_A 103 DSLDDVTQLSQFQVVVATDT----------------VSLEDKVKINEFCHSSGIRFISSETRGLFG 152 (1015)
T ss_dssp CCCCCSTTGGGCSEEEECTT----------------SCHHHHHHHHHHHHHHTCEEEEEEEETTEE
T ss_pred cCCCCHHHHhcCCEEEEcCC----------------CCHHHHHHHHHHHHHcCCCEEEEEecccEE
Confidence 55555556678999996531 133344467788888888888887666544
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.045 Score=54.79 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=31.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
|+|.|.| .|++|..++..|++.|++|++++++..
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGANVRCIDTDRN 36 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 6899998 799999999999999999999998643
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.032 Score=55.66 Aligned_cols=91 Identities=20% Similarity=0.319 Sum_probs=56.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-C---eEEEEecCCCCCccccccccCCCceEEEeccc------ccccccCCCEEEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG-D---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV------VEPILLEVDQIYH 185 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G-~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~------~~~~~~~~d~Vih 185 (447)
++|+|.| .|.||+.++..|+++. . +|++++.....+ .+....+ .++...+.|. .++.+.+.|+|||
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~--~~~~~~g-~~~~~~~Vdadnv~~~l~aLl~~~DvVIN 89 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV--DVAQQYG-VSFKLQQITPQNYLEVIGSTLEENDFLID 89 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC--CHHHHHT-CEEEECCCCTTTHHHHTGGGCCTTCEEEE
T ss_pred CCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh--hHHhhcC-CceeEEeccchhHHHHHHHHhcCCCEEEE
Confidence 4699999 9999999999999975 3 688887654332 2221111 1222222222 2334455699998
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~S 228 (447)
++-.. ....++++|.++|+.++=++
T Consensus 90 ~s~~~------------------~~l~Im~acleaGv~YlDTa 114 (480)
T 2ph5_A 90 VSIGI------------------SSLALIILCNQKGALYINAA 114 (480)
T ss_dssp CCSSS------------------CHHHHHHHHHHHTCEEEESS
T ss_pred CCccc------------------cCHHHHHHHHHcCCCEEECC
Confidence 65321 12268999999997766544
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.04 Score=52.37 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=47.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccccccccCCCceEEEecccccc-cccCCCEEEEecc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-ILLEVDQIYHLAC 188 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~~d~Vih~Ag 188 (447)
++..|+|.|.| .|.+|..++..|.+.|+ +|++.+|+...... ... .+ .++....|. +. .+.++|+||-+..
T Consensus 30 ~~~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~-a~~-~G--~~~~~~~~~-~~~~~~~aDvVilavp 103 (314)
T 3ggo_A 30 SLSMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISK-AVD-LG--IIDEGTTSI-AKVEDFSPDFVMLSSP 103 (314)
T ss_dssp CCSCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH-HHH-TT--SCSEEESCT-TGGGGGCCSEEEECSC
T ss_pred hcCCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHH-CC--CcchhcCCH-HHHhhccCCEEEEeCC
Confidence 44558999999 89999999999999999 99999986432211 111 11 111112222 33 5678999998763
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.019 Score=54.89 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=32.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYF 149 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~ 149 (447)
.+++++|+|.| .|++|.++++.|++.|. +++++|++.
T Consensus 31 kL~~~~VlIvG-aGGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 31 IIKNTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp HHHTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HHhCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 45778999999 79999999999999997 788888753
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.072 Score=50.33 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=31.3
Q ss_pred CCCCe-EEEEcC-C-----------------ChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 113 RKSLR-ILVTGG-A-----------------GFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 113 ~~~~~-ilVtGa-s-----------------G~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
+.|++ ||||+| | |-.|.++++.++++|++|+.+.+..
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~ 89 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR 89 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCC
Confidence 46777 888855 4 7799999999999999999998853
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.03 Score=51.66 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=44.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~-V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
.+|+|.|.|+ |.+|..++..|.+.|++ |.+.+|+.... +.+.... .+.. .+..++.+.++|+||-+.
T Consensus 9 ~~m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~-~~~~~~~---g~~~--~~~~~~~~~~~Dvvi~av 76 (266)
T 3d1l_A 9 EDTPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESA-RELAQKV---EAEY--TTDLAEVNPYAKLYIVSL 76 (266)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHH-HHHHHHT---TCEE--ESCGGGSCSCCSEEEECC
T ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHH-HHHHHHc---CCce--eCCHHHHhcCCCEEEEec
Confidence 4578999995 99999999999999998 78888753321 1111111 1222 122333456799999876
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.01 Score=57.19 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~ 149 (447)
.|.+|+|+|+ |.+|..+++.+...|+ +|++++++.
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~ 199 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNP 199 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 5778999999 9999999998888999 999998753
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.013 Score=56.14 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=44.5
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEecc--ccccc-ccCCCEEEEecc
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHD--VVEPI-LLEVDQIYHLAC 188 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D--~~~~~-~~~~d~Vih~Ag 188 (447)
+|+|+||+|.+|...++.+...|++|++++++... .+... .++... ++.-+.| ..... -.++|+||+++|
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~-~~~~~-~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g 226 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA-ADYLK-QLGASEVISREDVYDGTLKALSKQQWQGAVDPVG 226 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST-HHHHH-HHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHH-HcCCcEEEECCCchHHHHHHhhcCCccEEEECCc
Confidence 69999999999999999888889999999986432 22222 222211 1111111 11111 135899999987
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.057 Score=50.23 Aligned_cols=69 Identities=16% Similarity=0.043 Sum_probs=44.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc---eEEEecccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR---FELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~---v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
|+|.|.|+ |.+|..++..|.+.|++|++++|+.... +.+........ ..+. .+. .+.+.++|+||-+..
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~~~~-~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~d~vi~~v~ 72 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPY-CSVNLVETDGSIFNESLT-AND-PDFLATSDLLLVTLK 72 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSE-EEEEEECTTSCEEEEEEE-ESC-HHHHHTCSEEEECSC
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCccce-eeEEEEcCCCceeeeeee-ecC-ccccCCCCEEEEEec
Confidence 57999995 9999999999999999999999865432 22211110111 1111 122 234567999998763
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.36 Score=39.97 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=52.3
Q ss_pred CCeEEEEcCC---ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 115 SLRILVTGGA---GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 115 ~~~ilVtGas---G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
.++|.|.|++ |.+|..+++.|.+.|++|+.++-. .+++ ..+..+ .+ .++....+|+++-+..
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~----~~~i------~G~~~y-~s-l~~l~~~vDlvvi~vp--- 86 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK----YEEV------LGRKCY-PS-VLDIPDKIEVVDLFVK--- 86 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT----CSEE------TTEECB-SS-GGGCSSCCSEEEECSC---
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCC----CCeE------CCeecc-CC-HHHcCCCCCEEEEEeC---
Confidence 5689999998 899999999999999987666431 1211 012211 11 1222236898886542
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS 229 (447)
-.....+++.|.+.|++.+++.+
T Consensus 87 ---------------~~~~~~vv~~~~~~gi~~i~~~~ 109 (144)
T 2d59_A 87 ---------------PKLTMEYVEQAIKKGAKVVWFQY 109 (144)
T ss_dssp ---------------HHHHHHHHHHHHHHTCSEEEECT
T ss_pred ---------------HHHHHHHHHHHHHcCCCEEEECC
Confidence 12334567777778885554443
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.078 Score=54.10 Aligned_cols=105 Identities=10% Similarity=0.120 Sum_probs=66.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCC----------cccc------------ccccCCCceEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGK----------KDNL------------IHHFGNPRFELI 168 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~----------~~~~------------~~~~~~~~v~~~ 168 (447)
.+...+|+|.| .|++|.++++.|+..|. +++++|.+.-.. ...+ ...-...++..+
T Consensus 29 ~L~~~~VlvvG-~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~ 107 (531)
T 1tt5_A 29 ALESAHVCLIN-ATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV 107 (531)
T ss_dssp HHHHCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEE
T ss_pred HHhcCeEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEe
Confidence 34567899999 58999999999999998 788887542110 0000 000011234445
Q ss_pred ecccc------cccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 169 RHDVV------EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 169 ~~D~~------~~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
..++. ...+.++|+||.+.. |...-..+.++|.+.++.+|..++.+.+|
T Consensus 108 ~~~~~~~~~~~~~~~~~~DvVi~~~d-----------------~~~~r~~ln~~c~~~~iplI~~~~~G~~G 162 (531)
T 1tt5_A 108 EESPENLLDNDPSFFCRFTVVVATQL-----------------PESTSLRLADVLWNSQIPLLICRTYGLVG 162 (531)
T ss_dssp SSCHHHHHHSCGGGGGGCSEEEEESC-----------------CHHHHHHHHHHHHHTTCCEEEEEEETTEE
T ss_pred CCCcchhhhhhHHHhcCCCEEEEeCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecCCeE
Confidence 44442 234567999998741 22233456678888888999888776555
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.22 Score=48.26 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=40.4
Q ss_pred CeEEEEcCCChhHHHHHH-HHHhCCC---eEEEEecCCCCCccccccccCCCceEEEeccccc-ccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVD-RLMDRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE-PILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~-~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~d~Vih~Ag 188 (447)
++|.|.||||++|+.|++ .|.++.+ ++..+..+.... .+.. +......+. |..+ ..+.++|+||-|.+
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~--~~~~-~~~~~~~~~--~~~~~~~~~~~Dvvf~a~~ 73 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV--PAPN-FGKDAGMLH--DAFDIESLKQLDAVITCQG 73 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCC-SSSCCCBCE--ETTCHHHHTTCSEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCc--CHHH-hCCCceEEE--ecCChhHhccCCEEEECCC
Confidence 579999999999999999 6666653 666554322211 1111 111122222 2222 23578999999876
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.21 Score=48.51 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCChhHHHHHH-HHHhCC---CeEEEEecCCCCCccccccccCCCceEEEeccccc-ccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVD-RLMDRG---DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE-PILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~-~L~~~G---~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~d~Vih~Ag 188 (447)
..++|.|.||||++|+.|++ .|.++. .++..+..+... ..+.. +......+. +..+ ..+.++|+||-|.+
T Consensus 3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG--~~~~~-~~~~~~~v~--~~~~~~~~~~vDvvf~a~~ 77 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAG--GKAPS-FAKNETTLK--DATSIDDLKKCDVIITCQG 77 (377)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTT--SBCCT-TCCSCCBCE--ETTCHHHHHTCSEEEECSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcC--CCHHH-cCCCceEEE--eCCChhHhcCCCEEEECCC
Confidence 35789999999999999999 666665 366655432211 11111 111112222 2222 23568999999876
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCc
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTS 230 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~ 230 (447)
. .-+..+...+.+.|+ ++|=.|+.
T Consensus 78 ~------------------~~s~~~~~~~~~~G~k~~VID~ss~ 103 (377)
T 3uw3_A 78 G------------------DYTNDVFPKLRAAGWNGYWIDAASS 103 (377)
T ss_dssp H------------------HHHHHHHHHHHHTTCCSEEEECSST
T ss_pred h------------------HHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 1 112345555667786 45555554
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.023 Score=55.30 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=47.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCC-ceEEEeccccccc----ccCCCEEEEec
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEPI----LLEVDQIYHLA 187 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~----~~~~d~Vih~A 187 (447)
..|.+|+|+||+|.+|...++.+...|++|+++.+ +.+.+ +...++.. -+++-+.|..+.. -.++|+||.++
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~--~~~~~-~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~ 239 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCS--PHNFD-LAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCI 239 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC--GGGHH-HHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESS
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC--HHHHH-HHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECC
Confidence 36789999999999999999988889999998863 22222 22233321 1222222322211 12499999998
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
|
T Consensus 240 g 240 (371)
T 3gqv_A 240 T 240 (371)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.065 Score=48.83 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEE-Eec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIV-VDN 147 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~-l~r 147 (447)
++++|.|+|+ |.+|+.+++.+.+++.+++. +++
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~ 35 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKGHEIVGVIEN 35 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEec
Confidence 3589999999 99999999999998777665 444
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.22 Score=40.97 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCC---ChhHHHHHHHHHhCCCeEEEEec
Q 013226 113 RKSLRILVTGGA---GFVGSHLVDRLMDRGDSVIVVDN 147 (447)
Q Consensus 113 ~~~~~ilVtGas---G~IG~~l~~~L~~~G~~V~~l~r 147 (447)
.+.++|.|.|+| |-+|..+++.|.+.|++|+.++.
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp 49 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNP 49 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCC
Confidence 356789999987 89999999999999999877765
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.089 Score=50.11 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=50.5
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.||+|.|.| .|-||+.+++.|...|.+|++.+|...... .. ......+-.++.+.++|+|+.+..
T Consensus 136 ~~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-~~--------~~~~~~~~l~ell~~aDvV~l~lP 203 (324)
T 3hg7_A 136 QGLKGRTLLILG-TGSIGQHIAHTGKHFGMKVLGVSRSGRERA-GF--------DQVYQLPALNKMLAQADVIVSVLP 203 (324)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCT-TC--------SEEECGGGHHHHHHTCSEEEECCC
T ss_pred cccccceEEEEE-ECHHHHHHHHHHHhCCCEEEEEcCChHHhh-hh--------hcccccCCHHHHHhhCCEEEEeCC
Confidence 467899999999 899999999999999999999998642211 11 112234445566778999997764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.021 Score=54.46 Aligned_cols=71 Identities=23% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEeccccccc-ccCCCEEEEecc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPI-LLEVDQIYHLAC 188 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~-~~~~d~Vih~Ag 188 (447)
++ |+|+|++|.+|...++.+...|++|++++++..+ .+.+ ..++... ++.-+.+..... -.++|+||.++|
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~-~~~~-~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g 220 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGREST-HGYL-KSLGANRILSRDEFAESRPLEKQLWAGAIDTVG 220 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG-HHHH-HHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSC
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHH-HhcCCCEEEecCCHHHHHhhcCCCccEEEECCC
Confidence 45 9999999999999999998899999999986432 2222 2222211 111111111111 135899999886
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.16 Score=52.74 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccc-----------------------cccCCCceEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLI-----------------------HHFGNPRFELI 168 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~-----------------------~~~~~~~v~~~ 168 (447)
+...+|+|.| .|++|.++++.|++.|. +++++|.+.-... ++. ..-...++..+
T Consensus 15 L~~s~VlVVG-aGGLGsevak~La~aGVG~ItlvD~D~Ve~S-NLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~ 92 (640)
T 1y8q_B 15 VAGGRVLVVG-AGGIGCELLKNLVLTGFSHIDLIDLDTIDVS-NLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAY 92 (640)
T ss_dssp HHHCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEECCBCCGG-GGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEE
T ss_pred HhcCeEEEEC-cCHHHHHHHHHHHHcCCCeEEEecCCEEChh-hcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEE
Confidence 4567899999 59999999999999997 8888886532110 000 00012245555
Q ss_pred eccccc-----ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 169 RHDVVE-----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 169 ~~D~~~-----~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
..++.+ ..+.++|+||.+.. |+..-..+.++|.+.++.+|..++.+.+
T Consensus 93 ~~~i~~~~~~~~~~~~~DlVvda~D-----------------n~~aR~~ln~~c~~~~iPlI~~g~~G~~ 145 (640)
T 1y8q_B 93 HDSIMNPDYNVEFFRQFILVMNALD-----------------NRAARNHVNRMCLAADVPLIESGTAGYL 145 (640)
T ss_dssp ESCTTSTTSCHHHHTTCSEEEECCS-----------------CHHHHHHHHHHHHHHTCCEEEEEEETTE
T ss_pred ecccchhhhhHhhhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEeccc
Confidence 555533 23567999998752 3333345667788888888877655533
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.089 Score=50.55 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=62.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
..+.||+|.|.| .|-||+.+++.|...|.+|++.+|.... .. . ..+.+. ..++.+.++|+|+.+....
T Consensus 144 ~~l~gktvgIiG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~----~-~~~~~~---~l~ell~~aDvV~l~~Plt 211 (343)
T 2yq5_A 144 NEIYNLTVGLIG-VGHIGSAVAEIFSAMGAKVIAYDVAYNP---EF----E-PFLTYT---DFDTVLKEADIVSLHTPLF 211 (343)
T ss_dssp CCGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCG---GG----T-TTCEEC---CHHHHHHHCSEEEECCCCC
T ss_pred cccCCCeEEEEe-cCHHHHHHHHHHhhCCCEEEEECCChhh---hh----h-cccccc---CHHHHHhcCCEEEEcCCCC
Confidence 467899999999 8999999999999999999999986432 11 1 112332 2345567799999876432
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccc
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 232 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v 232 (447)
.... .++ | ...+..+ +.|.-+|.+|...+
T Consensus 212 ~~t~------~li--~----~~~l~~m-k~gailIN~aRg~~ 240 (343)
T 2yq5_A 212 PSTE------NMI--G----EKQLKEM-KKSAYLINCARGEL 240 (343)
T ss_dssp TTTT------TCB--C----HHHHHHS-CTTCEEEECSCGGG
T ss_pred HHHH------HHh--h----HHHHhhC-CCCcEEEECCCChh
Confidence 1100 000 0 1123333 23558888988765
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.069 Score=50.73 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=49.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.||+|.|.| .|-||+.+++.|...|.+|++.+|+.... +.. ..+...+-.++.+.++|+|+.+..
T Consensus 135 ~~l~g~tvGIiG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~-~~~--------~~~~~~~~l~ell~~aDiV~l~~P 202 (315)
T 3pp8_A 135 YTREEFSVGIMG-AGVLGAKVAESLQAWGFPLRCWSRSRKSW-PGV--------ESYVGREELRAFLNQTRVLINLLP 202 (315)
T ss_dssp CCSTTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEEESSCCCC-TTC--------EEEESHHHHHHHHHTCSEEEECCC
T ss_pred CCcCCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEcCCchhh-hhh--------hhhcccCCHHHHHhhCCEEEEecC
Confidence 467899999999 89999999999999999999999864321 111 111222345566778999987764
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.047 Score=51.24 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=49.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.||+|.|.| .|.||+.+++.|...|.+|++.+|+...... +. ..+..++.+.++|+|+.+..
T Consensus 118 ~~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~----------~~--~~~~l~ell~~aDiV~l~~P 182 (290)
T 3gvx_A 118 TLLYGKALGILG-YGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV----------DV--ISESPADLFRQSDFVLIAIP 182 (290)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSCCCTTC----------SE--ECSSHHHHHHHCSEEEECCC
T ss_pred eeeecchheeec-cCchhHHHHHHHHhhCcEEEEEecccccccc----------cc--ccCChHHHhhccCeEEEEee
Confidence 457899999999 8999999999999999999999986432211 11 23344556677999998764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.048 Score=52.58 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
.|.+|+|+|+ |.+|...++.+...|++|++++++
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~ 201 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARS 201 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCC
Confidence 5789999996 999999999888899999888875
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.3 Score=44.03 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=50.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEE-EEecCCCCCccccccccCCCceEEEecccccccc-cCCCEEEEeccCCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVI-VVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL-LEVDQIYHLACPASPV 193 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~-~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~Vih~Ag~~~~~ 193 (447)
|+|.|.|. |.+|+.+++.|.+.|++|. +.+++. ..+ . ...| .++.+ .++|+||-+...
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~~--~~~---------~---~~~~-~~~l~~~~~DvVv~~~~~---- 60 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNGFEIAAILDVRG--EHE---------K---MVRG-IDEFLQREMDVAVEAASQ---- 60 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSC--CCT---------T---EESS-HHHHTTSCCSEEEECSCH----
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCEEEEEEecCc--chh---------h---hcCC-HHHHhcCCCCEEEECCCH----
Confidence 47999996 9999999999998899985 555532 111 0 1112 22333 579999988741
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCc
Q 013226 194 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230 (447)
Q Consensus 194 ~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~ 230 (447)
. ....++..+.+.|+.+|..|+.
T Consensus 61 ------~--------~~~~~~~~~l~~G~~vv~~~~~ 83 (236)
T 2dc1_A 61 ------Q--------AVKDYAEKILKAGIDLIVLSTG 83 (236)
T ss_dssp ------H--------HHHHHHHHHHHTTCEEEESCGG
T ss_pred ------H--------HHHHHHHHHHHCCCcEEEECcc
Confidence 0 1112334556678776665554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 447 | ||||
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 1e-118 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-85 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-80 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 8e-76 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 1e-69 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 2e-67 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-64 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 4e-64 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 3e-63 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 3e-61 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 4e-61 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 6e-60 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 7e-60 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 3e-53 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 1e-49 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 7e-45 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 2e-36 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 2e-30 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 5e-30 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 4e-29 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 4e-25 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 6e-24 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 1e-21 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 2e-20 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 5e-15 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 2e-14 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 2e-14 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 8e-11 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 2e-07 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 2e-06 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 3e-04 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 0.001 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 0.003 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 346 bits (889), Expect = e-118
Identities = 193/306 (63%), Positives = 236/306 (77%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+TGGAGFVGSHL D+LM G V VVDN+FTG+K N+ H G+ FELI HDVVEP+
Sbjct: 3 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 62
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+EVDQIYHLA PASP +Y +NP+KT+KTN +GTLNMLGLAKRVGAR LL STSEVYGDP
Sbjct: 63 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 122
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
HPQ+E YWG+VNPIG R+CYDEGKR AET+ Y + G+E R+ARIFNT+GPRM ++
Sbjct: 123 EVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 182
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGEF 356
DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM + P NLGNP E
Sbjct: 183 DGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEH 242
Query: 357 TMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVA 416
T+LE A++++ ++ + I+F +DDP KRKPDI KAK +LGWEP V L +GL +
Sbjct: 243 TILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIH 302
Query: 417 DFRHRI 422
FR +
Sbjct: 303 YFRKEL 308
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 263 bits (673), Expect = 3e-85
Identities = 78/336 (23%), Positives = 136/336 (40%), Gaps = 35/336 (10%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNY-FTGKKDNLIHHFGNPRFELIRHDVVE 174
+IL+TGGAGF+GS +V ++ D+V+ +D + G ++L + R+ D+ +
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 175 PILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----- 222
+ D + HLA + P I+TN+VGT +L +A++ +
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121
Query: 223 -----RFLLTSTSEVYGDPLQHPQAET-----YWGNVNPIGVRSCYDEGKRTAETLTMDY 272
RF ST EVYGD + E + S Y K +++ L +
Sbjct: 122 KKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 273 HRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 332
R G+ + N YGP +++ + AL +PL +YG G Q R + +V D
Sbjct: 182 RRTYGLPTIVTNCSNNYGPYH--FPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDH 239
Query: 333 VEGLIRLMEGDHVG-PFNLGNPGEFTMLELAEVVQ--------EIIDRNARIEFRPNTED 383
L ++ G +N+G E L++ + + +I + +
Sbjct: 240 ARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPG 299
Query: 384 DPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419
+ D K + LGW+P T G+ V +
Sbjct: 300 HDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYL 335
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 250 bits (638), Expect = 1e-80
Identities = 89/318 (27%), Positives = 141/318 (44%), Gaps = 22/318 (6%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRG------DSVIVVDNY-FTGKKDNLIHHFGNPRFELIR 169
R+LVTGGAGF+GSH V +L+ D VIV+D+ + G + NL +PR +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 170 HDVVEPILLEV-----DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-AR 223
D+ + LL D I H A + +TNV GT +L A G R
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
Query: 224 FLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIA 283
+ ST++VYG E+ +P+ S Y K ++ + YHR G++ RI
Sbjct: 122 VVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 284 RIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
R N YGP +++ FV L L +YGDG R + D G+ ++ G
Sbjct: 177 RCCNNYGPYQ--HPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGG 234
Query: 344 HVG-PFNLGNPGEFTMLELAEVVQEIIDRNA-RIEFRPNTEDDPHKRKPDITKAKQLLGW 401
G +++G E T EL ++ + + + + + + + D K ++ LG+
Sbjct: 235 RAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGY 294
Query: 402 EPRVTLRKGLPLMVADFR 419
P+V+ GL V +R
Sbjct: 295 RPQVSFADGLARTVRWYR 312
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 238 bits (609), Expect = 8e-76
Identities = 84/352 (23%), Positives = 138/352 (39%), Gaps = 55/352 (15%)
Query: 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDN----YFTGKKDNLIH--HFGNPRFELI 168
S L+TG G GS+L + L+++G V + + T + D++ H NP+F L
Sbjct: 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLH 60
Query: 169 RHDVVEPILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 221
D+ + L D++Y+L + +P T + +GTL +L + +G
Sbjct: 61 YGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG 120
Query: 222 ----ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
RF STSE+YG + PQ ET P RS Y K A +T++Y G
Sbjct: 121 LEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYG 175
Query: 278 IEARIARIFNTYGPRM--CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ A +FN PR ++ A E G+ R + D V+
Sbjct: 176 MYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM 235
Query: 336 LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTED------------ 383
+++ + F + ++++ + E+ + R E E
Sbjct: 236 QWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAP 295
Query: 384 -----------DPHKRKP--------DITKAKQLLGWEPRVTLRKGLPLMVA 416
DP +P D TKA + LGW+P +TLR+ + MVA
Sbjct: 296 GVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVA 347
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 221 bits (564), Expect = 1e-69
Identities = 72/322 (22%), Positives = 118/322 (36%), Gaps = 32/322 (9%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+ + G G VGS + +L RGD +V+ +D L + +
Sbjct: 4 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRT-----RDELNLLDSRAVHDFFASE----- 53
Query: 177 LLEVDQIYHLACPASP-VHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTSTSEVYG 234
+DQ+Y A V P I N++ N++ A + + L +S +Y
Sbjct: 54 --RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYP 111
Query: 235 DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMC 294
+ P AE+ Y K L Y+R G + R N YGP
Sbjct: 112 KLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDN 171
Query: 295 IDDGR-------VVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH--- 344
+ A A + + V+G G R F V D+ I +ME H
Sbjct: 172 FHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVW 231
Query: 345 -------VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQ 397
+ N+G + T+ ELA+ + +++ R+ F + D ++ D+T+ Q
Sbjct: 232 LENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQ 291
Query: 398 LLGWEPRVTLRKGLPLMVADFR 419
LGW ++L GL F
Sbjct: 292 -LGWYHEISLEAGLASTYQWFL 312
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 216 bits (551), Expect = 2e-67
Identities = 78/331 (23%), Positives = 138/331 (41%), Gaps = 27/331 (8%)
Query: 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL------IHHFGNPR 164
L + L+TG AGF+GS+L++ L+ V+ +DN+ TG + NL +
Sbjct: 12 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSN 71
Query: 165 FELIRHDVVEPILL-----EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR 219
F+ I+ D+ VD + H A S +P+ + TN+ G LNML A+
Sbjct: 72 FKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARD 131
Query: 220 VG-ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGI 278
F ++S YGD P+ E G S Y K E + R G
Sbjct: 132 AKVQSFTYAASSSTYGDHPGLPKVEDTIGK-----PLSPYAVTKYVNELYADVFSRCYGF 186
Query: 279 EARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL 336
R FN +G R + V+ + + ++ + + + GDG+ +R F ++ + V+
Sbjct: 187 STIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQAN 246
Query: 337 IRLME---GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNA-----RIEFRPNTEDDPHKR 388
+ +N+ G ++ +L +++ + N +R E D
Sbjct: 247 LLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHS 306
Query: 389 KPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419
DI+KA +LLG+ P+ + G+ L + +
Sbjct: 307 LADISKAAKLLGYAPKYDVSAGVALAMPWYI 337
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 209 bits (531), Expect = 2e-64
Identities = 80/333 (24%), Positives = 133/333 (39%), Gaps = 34/333 (10%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVVE 174
R+LVTGG+G++GSH +L+ G VI++DN K+ L I G + D+
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 175 PILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLL 226
L+ +D + H A + P++ NV GTL ++ + F+
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEA-RIARI 285
+S++ VYGD + P E++ +S Y + K E + D + + + R
Sbjct: 122 SSSATVYGDQPKIPYVESFPTGTP----QSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 286 FNTYGPRMCIDDG-------RVVSNFVAQAL--RKEPLTVYG------DGKQTRSFQFVS 330
FN G D G + ++AQ R++ L ++G DG R + V
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237
Query: 331 DLVEGLIRLMEGDH----VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPH 386
DL +G + ME V +NLG ++L++ + + F P E D
Sbjct: 238 DLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLP 297
Query: 387 KRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419
D +KA + L W TL +
Sbjct: 298 AYWADASKADRELNWRVTRTLDEMAQDTWHWQS 330
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 208 bits (529), Expect = 4e-64
Identities = 75/320 (23%), Positives = 128/320 (40%), Gaps = 19/320 (5%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE 174
I+VTGGAGF+GS+ V + + V V+D + R EL+ D+ +
Sbjct: 4 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD 63
Query: 175 PILLE-----VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229
L++ D I H A + + +P I TN +GT +L A++ RF ST
Sbjct: 64 AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 123
Query: 230 SEVYGD-------PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARI 282
EVYGD P + S Y K ++ + + R G++A I
Sbjct: 124 DEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATI 183
Query: 283 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342
+ N YGP I+ + + + L +YG+GK R + +D G+ ++
Sbjct: 184 SNCSNNYGPYQHIE--KFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTK 241
Query: 343 DHVGPFNLGNPGEFTM-LELAEVVQEIIDRN-ARIEFRPNTEDDPHKRKPDITKAKQLLG 400
+G L E+ E++ E + + + + + D +K + LG
Sbjct: 242 GRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELG 301
Query: 401 WEPRVT-LRKGLPLMVADFR 419
W P+ T +GL + +
Sbjct: 302 WTPQFTDFSEGLEETIQWYT 321
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 206 bits (525), Expect = 3e-63
Identities = 85/319 (26%), Positives = 139/319 (43%), Gaps = 14/319 (4%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
++L+I +TG GF+ SH+ RL G VI D K +++ F L+ V+
Sbjct: 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDW---KKNEHMTEDMFCDEFHLVDLRVM 70
Query: 174 EPILLEVDQIYHLACPASP----VHYKFNPVKTIKTNVVGTLNMLGLAKRVG-ARFLLTS 228
E L + + H+ A+ + N + N + + NM+ A+ G RF S
Sbjct: 71 ENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 130
Query: 229 TSEVYG--DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
++ +Y L+ + P + + K E L Y++ GIE RI R
Sbjct: 131 SACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFH 190
Query: 287 NTYGPR---MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343
N YGP + + + ++GDG QTRSF F+ + VEG++RL + D
Sbjct: 191 NIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 250
Query: 344 HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEP 403
P N+G+ +M E+AE+V ++ I P E R D K+ LGW P
Sbjct: 251 FREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRG-RNSDNNLIKEKLGWAP 309
Query: 404 RVTLRKGLPLMVADFRHRI 422
+ L++GL + + +I
Sbjct: 310 NMRLKEGLRITYFWIKEQI 328
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 200 bits (509), Expect = 3e-61
Identities = 78/331 (23%), Positives = 127/331 (38%), Gaps = 32/331 (9%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF-TGKKDNLIHHFGNPRFELIRHDVVEP 175
++L+TGG GF+GS+L + +G +IV DN G DNL FE + D+
Sbjct: 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 61
Query: 176 ILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLA--KRVGARFLL 226
+ D +HLA + NP + NV GTLN+L +
Sbjct: 62 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 121
Query: 227 TSTSEVYGDPLQHPQAETYWGNVN-----------PIGVRSCYDEGKRTAETLTMDYHRG 275
+ST++VYGD Q+ ET + S Y K A+ +DY R
Sbjct: 122 SSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARI 181
Query: 276 LGIEARIARIFNTYGPRMCIDDGRVVSNFV------AQALRKEPLTVYGDGKQTRSFQFV 329
G+ + R + YG R + + + +P T+ G+GKQ R
Sbjct: 182 FGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHA 241
Query: 330 SDLVEGLIRLMEGDHVGP-----FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDD 384
D++ + ++LEL +++++ + + R P E D
Sbjct: 242 EDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESD 301
Query: 385 PHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415
DI K + W P+V+ + G+ M
Sbjct: 302 QRVFVADIKKITNAIDWSPKVSAKDGVQKMY 332
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 200 bits (509), Expect = 4e-61
Identities = 70/339 (20%), Positives = 125/339 (36%), Gaps = 46/339 (13%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDN----YFTGKKDNLIHH---FGNPRFELIRH 170
L+TG G GS+L + L+++G V + + TG+ ++L + +L
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYG 63
Query: 171 DVVEPIL-------LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-- 221
D+ + ++ +IY+L + T + VGTL +L K G
Sbjct: 64 DLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLI 123
Query: 222 --ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIE 279
+F STSE+YG + PQ ET P RS Y K A + +++ +
Sbjct: 124 NSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIVVNFREAYNLF 178
Query: 280 ARIARIFNTYGPRMCIDDG--RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLI 337
A +FN PR + ++ + L + G+ R + D VE +
Sbjct: 179 AVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMW 238
Query: 338 RLMEGDHVGPFNLGNPGEFTM---------------------LELAEVVQEIIDRNARIE 376
+++ D F + ++ +E + ++
Sbjct: 239 LMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVD 298
Query: 377 FRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415
+ + + D TKAKQ L W+PRV + + MV
Sbjct: 299 LKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMV 337
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 196 bits (499), Expect = 6e-60
Identities = 67/322 (20%), Positives = 127/322 (39%), Gaps = 21/322 (6%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF-TGKKDNLIHHFGNPRFELIRHDVVEP 175
LVTG G G++L L+++G V + + + L + D+ +
Sbjct: 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADA 61
Query: 176 ILL-------EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLL 226
+ + ++Y+LA + PV T + +G ++L ++ RF
Sbjct: 62 CSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQ 121
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIF 286
STSE++G Q E P RS Y K +T++Y G+ A +F
Sbjct: 122 ASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILF 176
Query: 287 NTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH 344
N P I+ +V L K+ G+ R + F D VE + +++ D
Sbjct: 177 NHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK 236
Query: 345 VGPFNLGNPGEFTMLELAEVVQEIIDRNAR----IEFRPNTEDDPHKRKPDITKAKQLLG 400
+ + T+ ++ ++ E + + R I+ + + KA+++LG
Sbjct: 237 ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLG 296
Query: 401 WEPRVTLRKGLPLMVADFRHRI 422
W+PR +L + + +MV R+
Sbjct: 297 WKPRTSLDELIRMMVEADLRRV 318
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 197 bits (500), Expect = 7e-60
Identities = 66/337 (19%), Positives = 121/337 (35%), Gaps = 36/337 (10%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--IHHFGNPRFELIRHDVVEP 175
+LVTGGAG++GSH V L++ G +V DN D++ + D+ +
Sbjct: 4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 63
Query: 176 ILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLT 227
LE +D + H A + P++ N++GT+ +L L ++ F+ +
Sbjct: 64 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 123
Query: 228 STSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR--GLGIEARIARI 285
S++ VYGD + P P+G + Y K E + D + + I R
Sbjct: 124 SSATVYGDATRFPNMIPIPEE-CPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRY 182
Query: 286 FNTYGPRMCIDDG--------RVVSNFVAQAL-RKEPLTVYGDGKQTRSFQFVSDLVEGL 336
FN G G ++ A+ R+E L ++GD +R + D + +
Sbjct: 183 FNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVV 242
Query: 337 IRLMEGDHVG--------------PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTE 382
+NLG+ T+ E+ + + +
Sbjct: 243 DLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRA 302
Query: 383 DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419
D +AK+ L W+ + + +
Sbjct: 303 GDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTT 339
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 179 bits (455), Expect = 3e-53
Identities = 69/338 (20%), Positives = 127/338 (37%), Gaps = 38/338 (11%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL--------IHHFGNPRFELI 168
++LVTGGAG++GSH V L++ G +V+DN+ + + E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 169 RHDVVEPILLEVDQI-------YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG 221
D+++ L+ H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 222 ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDY-HRGLGIEA 280
+ L+ S+S Q+ G + Y + K E + D A
Sbjct: 124 VKNLVFSSSATVYGNPQYLP---LDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNA 180
Query: 281 RIARIFNTYGPRMCIDDG-------RVVSNFVAQAL--RKEPLTVYG------DGKQTRS 325
+ R FN G G + +V+Q R+E L V+G DG R
Sbjct: 181 VLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 240
Query: 326 FQFVSDLVEGLIRLMEGDHVGP----FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT 381
+ V DL +G I + +NLG +++L++ + +++ + +
Sbjct: 241 YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR 300
Query: 382 EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419
E D + + A++ LGW + L + + +
Sbjct: 301 EGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQK 338
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 170 bits (430), Expect = 1e-49
Identities = 67/324 (20%), Positives = 123/324 (37%), Gaps = 30/324 (9%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDN----YFTGKKDNL---IHHFGNPRFELIR 169
L+TG G GS+L + L+ +G V + + T + +++ H+ +L
Sbjct: 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY 62
Query: 170 HDVVEPILLE-------VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA 222
D+ + L D++Y+LA + P T G L +L +
Sbjct: 63 ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTI 122
Query: 223 RF-----LLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLG 277
+ S PQ+ET P RS Y K A T++Y G
Sbjct: 123 DSGRTVKYYQAGSSEMFGSTPPPQSET-----TPFHPRSPYAASKCAAHWYTVNYREAYG 177
Query: 278 IEARIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEG 335
+ A +FN PR + ++ + + G+ + +R + F D VE
Sbjct: 178 LFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEA 237
Query: 336 LIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRN----ARIEFRPNTEDDPHKRKPD 391
+ +++ + + + T+ E +V + N I+ R + + D
Sbjct: 238 MWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGD 297
Query: 392 ITKAKQLLGWEPRVTLRKGLPLMV 415
+KAK++LGW+P+V K + +MV
Sbjct: 298 ASKAKEVLGWKPQVGFEKLVKMMV 321
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 158 bits (400), Expect = 7e-45
Identities = 74/364 (20%), Positives = 124/364 (34%), Gaps = 69/364 (18%)
Query: 117 RILVTGGAGFVGSHLVDRLM-DRGDSVIVVDNYFTG------------------KKDNLI 157
R+LV GGAG++GSH V L+ D SV++VD+ + D
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 158 HHFGNPRFELIRHDVVEPILLE--------VDQIYHLACPASPVHYKFNPVKTIKTNVVG 209
+ + L DV L +D + H+ + +P+K NVVG
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 210 TLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV---RSCYDEGKRTAE 266
L +L ++ S+S T ++ S Y E K AE
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAE 183
Query: 267 TLTMDYHRGLGIEARIARIFNTYGPRMCIDDG-------RVVSNFVAQALRK-------- 311
+ D GI+ R FN G D G ++ + + +
Sbjct: 184 RMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLT 243
Query: 312 --------EPLTVYG------DGKQTRSFQFVSDLVEGLIRLMEGDHV----------GP 347
+ + ++G DG R + V DL I ++
Sbjct: 244 IHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSV 303
Query: 348 FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTL 407
FNLG +++ E+ EV ++ + E DP KA+++LGW+P+
Sbjct: 304 FNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDT 363
Query: 408 RKGL 411
+ +
Sbjct: 364 LEAI 367
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 134 bits (337), Expect = 2e-36
Identities = 75/341 (21%), Positives = 133/341 (39%), Gaps = 39/341 (11%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV--- 172
R+L+ G GF+G+HL +RL+ V +D L +P F + D+
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL----NHPHFHFVEGDISIH 57
Query: 173 ---VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229
+E + + D + L A+P+ Y NP++ + + L ++ + R + ST
Sbjct: 58 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 117
Query: 230 SEVYGDPLQHPQAETYWGNVNPIGV--RSCYDEGKRTAETLTMDYHRGLGIEARIARIFN 287
SEVYG E + + R Y K+ + + Y G++ + R FN
Sbjct: 118 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 177
Query: 288 TYG------PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341
G I R ++ + + P+ + GKQ R F + D +E L R++E
Sbjct: 178 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIE 237
Query: 342 GDHVG----PFNLGNPGEFTML-ELAEVVQEIIDRNARIEFRPNTE-------------- 382
N+GNP + EL E++ +++ P
Sbjct: 238 NAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKG 297
Query: 383 -DDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRI 422
D RKP I A + L WEP++ +++ + + F +
Sbjct: 298 YQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTV 338
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 117 bits (293), Expect = 2e-30
Identities = 57/307 (18%), Positives = 97/307 (31%), Gaps = 12/307 (3%)
Query: 118 ILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
I+VTGGAGF+GS++V L D+G + ++VVDN G K + N + + D + I
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL-NIADYMDKEDFLIQI 60
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+ + A L R
Sbjct: 61 MAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLERE--IPFLYASSAA 118
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
+ + + + Y K + + R FN YGPR
Sbjct: 119 TYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHK 178
Query: 297 DGRVVSNFVAQALRKEPL---TVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNP 353
F G R F +V D+ + + +E G FNLG
Sbjct: 179 GSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTG 238
Query: 354 GEFTMLELAEVVQEIIDRNARIEFRPNTED----DPHKRKPDITKAKQLLGWEPRVTLRK 409
+ +A+ + +IE+ P + + D+T + +P T+ +
Sbjct: 239 RAESFQAVADATLA-YHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 297
Query: 410 GLPLMVA 416
G+ +A
Sbjct: 298 GVTEYMA 304
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 117 bits (292), Expect = 5e-30
Identities = 48/327 (14%), Positives = 97/327 (29%), Gaps = 28/327 (8%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP----RFELIRHDV 172
+LVTG GFV SH+V++L++ G V K NL + + D+
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHGYKVRGTARS-ASKLANLQKRWDAKYPGRFETAVVEDM 71
Query: 173 VEPILLE--VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230
++ + + +A AS V + + + + GTLN L A + TS
Sbjct: 72 LKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
Query: 231 EVYGDPLQHPQAETYWGNV-----------------NPIGVRSCYDEGKRTAETL--TMD 271
+ P E + + +P Y K AE
Sbjct: 132 STVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFM 191
Query: 272 YHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331
T G + ++ +L ++ + + D
Sbjct: 192 DENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAVD 251
Query: 332 LVEGLIRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEII-DRNARIEFRPNTEDDPHKRK 389
+ + + + G G F + +++ + +F +D
Sbjct: 252 IGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDT 311
Query: 390 PDITKAKQLLGWEPRVTLRKGLPLMVA 416
+ + LG ++ + + +V
Sbjct: 312 APSLEILKSLGRPGWRSIEESIKDLVG 338
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 114 bits (286), Expect = 4e-29
Identities = 55/325 (16%), Positives = 97/325 (29%), Gaps = 23/325 (7%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+ VTG GF G L L G +V + D+ +
Sbjct: 10 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQN 69
Query: 177 LLEVDQ-------IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGL----AKRVGARFL 225
L ++H+A PV+T TNV+GT+ +L +
Sbjct: 70 KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNI 129
Query: 226 LTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTM---DYHRGLGIEARI 282
+ + + + G +P E ++ + + G
Sbjct: 130 TSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVAT 189
Query: 283 ARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342
R N G D R+V + + + +P+ + + L L+ +
Sbjct: 190 VRAGNVIGGGDWALD-RIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKL 248
Query: 343 DHVGPFNLG-------NPGEFTMLELAEVVQEIIDRNARIEFRPNTED-DPHKRKPDITK 394
G + + + E + + A + N + H K D +K
Sbjct: 249 YTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSK 308
Query: 395 AKQLLGWEPRVTLRKGLPLMVADFR 419
AK LGW PR L L +V +
Sbjct: 309 AKMQLGWHPRWNLNTTLEYIVGWHK 333
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 104 bits (258), Expect = 4e-25
Identities = 77/370 (20%), Positives = 113/370 (30%), Gaps = 65/370 (17%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL------------------IH 158
R++V GG G+ G L + V +VDN D+
Sbjct: 3 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 62
Query: 159 HFGNPRFELIRHDVVEPILLE----------VDQIYHLACPASPVHYKFNPVKTIKTNVV 208
EL D+ + L V + + V T NV+
Sbjct: 63 ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVI 122
Query: 209 GTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYW---------GNVNPIGVRSCY 258
GTLN+L K G L+ + E Y P S Y
Sbjct: 123 GTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFY 182
Query: 259 DEGKRTAETLTMDYHRGLGIEARIARIFNTYGPR---------------MCIDDGRVVSN 303
K + GI A YG + G ++
Sbjct: 183 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNR 242
Query: 304 FVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME-GDHVGPFNLGNPG--EFTMLE 360
F QA PLTVYG G QTR + + D V+ + + G F + N +F++ E
Sbjct: 243 FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNE 302
Query: 361 LAEVVQEI-----IDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMV 415
LA +V + +D P E + H TK + LG EP L ++
Sbjct: 303 LASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYLSDSLLDSLL 361
Query: 416 ---ADFRHRI 422
F+ R+
Sbjct: 362 NFAVQFKDRV 371
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 98.7 bits (244), Expect = 6e-24
Identities = 47/310 (15%), Positives = 94/310 (30%), Gaps = 39/310 (12%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
+IL+TG G +G + +L + VI D ++ V
Sbjct: 3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQ---------------DLDITNVLAVNKF 47
Query: 177 LLEV--DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234
E + + + A + + K N +G N+ A VGA + ST V+
Sbjct: 48 FNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFD 107
Query: 235 DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMC 294
+ P E N ++ + + + L + I R YG
Sbjct: 108 GEAKEPITEFDEVNPQSAYGKTKLEGEN---------FVKALNPKYYIVRTAWLYGDGNN 158
Query: 295 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPG 354
+ + L V D Q + DL ++++++ + G F+ G
Sbjct: 159 FVKTMINLGK-----THDELKVVHD--QVGTPTSTVDLARVVLKVIDEKNYGTFHCTCKG 211
Query: 355 EFTMLELAEVVQEIIDRNARIEFRPNTEDD-----PHKRKPDITKAKQLLGWEPRVTLRK 409
+ + A + + + ++ E P + G R ++
Sbjct: 212 ICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKE 270
Query: 410 GLPLMVADFR 419
L + +
Sbjct: 271 SLKEYIDLLQ 280
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 92.9 bits (229), Expect = 1e-21
Identities = 31/274 (11%), Positives = 79/274 (28%), Gaps = 31/274 (11%)
Query: 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDN---YFTGKKDNLIHHFGNPRFELI 168
+KS R+L+ GG G++G +V+ + G V+ K ++ +F +LI
Sbjct: 1 DKKS-RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 59
Query: 169 RHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTS 228
+ + L ++ + + + + + + + L S
Sbjct: 60 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKL-----VEAIKEAGNIKRFLPS 114
Query: 229 TSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNT 288
+ D ++H + I
Sbjct: 115 EFGMDPDIMEHALQPGSI---------------TFIDKRKVRRAIEAASIPYTYVSSNMF 159
Query: 289 YGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP- 347
G G + ++ + +YGDG + D+ I+ ++
Sbjct: 160 AGYF----AGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNK 215
Query: 348 --FNLGNPGEFTMLELAEVVQEIIDRNARIEFRP 379
+ + E+ ++ + + ++N +
Sbjct: 216 TMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 89.1 bits (219), Expect = 2e-20
Identities = 34/266 (12%), Positives = 76/266 (28%), Gaps = 29/266 (10%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
RIL+ G G++G H+ +D G ++ T ++ E + +
Sbjct: 5 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQ----LLESFKASGANIV 60
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+D L V + V +++ + RF + +
Sbjct: 61 HGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNV 120
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
A++ + + GI G +
Sbjct: 121 HAVEPAKSVFEVKAKV-----------------RRAIEAEGIPYTYVSSNCFAGYFL--- 160
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG---PFNLGNP 353
R ++ A ++ + + GDG F D+ I+ ++ +
Sbjct: 161 --RSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPA 218
Query: 354 GEFTMLELAEVVQEIIDRNARIEFRP 379
++ EL + ++ ID+ + P
Sbjct: 219 NTLSLNELVALWEKKIDKTLEKAYVP 244
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 72.6 bits (176), Expect = 5e-15
Identities = 35/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEP 175
+LVTG +G G + +L + D + + + I + ++ D + P
Sbjct: 5 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINP 64
Query: 176 ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGD 235
+D + L + F+P K + + + ++V G
Sbjct: 65 AFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGV 124
Query: 236 PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCI 295
+ G + + + Y G I R
Sbjct: 125 K-HIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKE--- 180
Query: 296 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVG--PFNLGNP 353
G V V + + +D+ E I+ + + F+LG+
Sbjct: 181 --GGVRELLVGKDDE--------LLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSK 230
Query: 354 GEFT---MLELAEVVQEIIDR 371
E T + + ++ R
Sbjct: 231 PEGTSTPTKDFKALFSQVTSR 251
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 71.5 bits (173), Expect = 2e-14
Identities = 47/317 (14%), Positives = 90/317 (28%), Gaps = 42/317 (13%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
IL+ G G VG L L G+ +I +D + + + + + V +
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEFCGDFSN------PKGVAETVRK-- 52
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
L D I + A + + P N + A GA + ST V+
Sbjct: 53 -LRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGT 111
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
P ET + + ++ K + R + ++ G
Sbjct: 112 GDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIF------RTSWVYAGKGNNFAKT 165
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR-----LMEGDHVGPFNLG 351
R+ T+ Q + L + L + + G ++L
Sbjct: 166 MLRLAKERQ---------TLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLV 216
Query: 352 NPGEFTMLELAEVVQEIIDRN----ARIEFRPNTEDD-------PHKRKPDITKAKQLLG 400
G T + A +V + + A E P + + K ++
Sbjct: 217 AGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFD 276
Query: 401 WEPRVTLRKGLPLMVAD 417
G+ M+ +
Sbjct: 277 LILP-QWELGVKRMLTE 292
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.3 bits (168), Expect = 2e-14
Identities = 28/232 (12%), Positives = 60/232 (25%), Gaps = 42/232 (18%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
+I + G G G + + + G V V+ + ++++ V+
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT 64
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR-FLLTSTSEVYGD 235
+ D + L + + G N++ K G + +++ + D
Sbjct: 65 VAGQDAVIVLLGTRNDLSPTTV-------MSEGARNIVAAMKAHGVDKVVACTSAFLLWD 117
Query: 236 PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCI 295
P + P R G++
Sbjct: 118 PTKVPPRLQAV----------------TDDHIRMHKVLRESGLKYVAVMP---------- 151
Query: 296 DDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD-HVG 346
+ TV DG+ DL ++R + D + G
Sbjct: 152 -------PHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDG 196
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 60.8 bits (146), Expect = 8e-11
Identities = 36/331 (10%), Positives = 73/331 (22%), Gaps = 40/331 (12%)
Query: 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV 172
++ I V G G G+ L+ G V + + K P L + +
Sbjct: 1 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVH--SLKGLIAEELQAIPNVTLFQGPL 58
Query: 173 ------VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLL 226
++ + + + GT+ +
Sbjct: 59 LNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYG 118
Query: 227 TSTSEVYGDPLQHPQAETYWGNVNPIGVR-SCYDEGKRTAETLTMDYHRGLGIEARIARI 285
+ P + + V Y+ +
Sbjct: 119 PWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAP 178
Query: 286 FNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV 345
F+ P +D V + Q + P
Sbjct: 179 FDPDIPLPWLDAEHDVGPALLQIFKDGP----------------------------QKWN 210
Query: 346 GPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRV 405
G + +++ ++R R+ + + + P + QL E
Sbjct: 211 GHRIALTFETLSPVQVCAAFSRALNR--RVTYVQVPKVEIKVNIPVGYRE-QLEAIEVVF 267
Query: 406 TLRKGLPLMVADFRHRIFGDQKEAGGGGGGG 436
K + +F G K G G G
Sbjct: 268 GEHKAPYFPLPEFSRPAAGSPKGLGPANGKG 298
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 49.0 bits (115), Expect = 2e-07
Identities = 30/236 (12%), Positives = 66/236 (27%), Gaps = 37/236 (15%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI 176
R+L+ G G G HL+DR++ V+ + L H +++ +
Sbjct: 4 RVLLAGATGLTGEHLLDRILSEPTLAKVIAPA----RKALAEHPRLDNPVGPLAELLPQL 59
Query: 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 236
+D + + + ++ +
Sbjct: 60 DGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGK-----------------RALEMG 102
Query: 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID 296
+H + G + +G+ + + IAR +GPR
Sbjct: 103 ARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQL-----TIARPSLLFGPREEFR 157
Query: 297 DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGN 352
+++ +A+ L + + DL L RL + G + +
Sbjct: 158 LAEILAAPIARILPGKYHGIE-----------ACDLARALWRLALEEGKGVRFVES 202
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 21/251 (8%), Positives = 52/251 (20%), Gaps = 33/251 (13%)
Query: 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV 173
++ + + G +G G L+ ++++G V + R +
Sbjct: 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTL--------------------IGRRKLT 52
Query: 174 EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233
+ + Y R +
Sbjct: 53 FDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSA 112
Query: 234 GDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRM 293
+ S + + E + R R
Sbjct: 113 ELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEV-EAKVEELKFDRYSVFRPGVLLCDR- 170
Query: 294 CIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFN-LGN 352
+ R + L ++ D + V +V ++ + L N
Sbjct: 171 --QESR-----PGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLEN 223
Query: 353 PGEFTMLELAE 363
+ +L +
Sbjct: 224 K---AIHDLGK 231
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 39.2 bits (90), Expect = 3e-04
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVD-NYFTGKKDNLIHHFGNPRFELIRHDVVEP 175
+L+ G+GFV +D L D G V V + KK + P + D
Sbjct: 4 SVLM-LGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALD 62
Query: 176 ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVV 208
+ + P + K +VV
Sbjct: 63 AEVAKHDLVISLIPYTFHATVIKSAIRQKKHVV 95
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 38.0 bits (87), Expect = 0.001
Identities = 11/112 (9%), Positives = 25/112 (22%), Gaps = 5/112 (4%)
Query: 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV---- 172
+ +V G G VG L G V++ + + + +
Sbjct: 25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDA 84
Query: 173 -VEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR 223
+ ++ + + +V N G
Sbjct: 85 SRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGID 136
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (85), Expect = 0.003
Identities = 20/164 (12%), Positives = 39/164 (23%), Gaps = 26/164 (15%)
Query: 113 RKSL---RILVTGGAGFVGSHLVDRLMDRGDSVIVVD-NYFTGKKDNLIHHFGNPRFELI 168
RKS+ +L+TG +G +++ D N ++ +
Sbjct: 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTF 61
Query: 169 RHDVVEPILLE------------VDQIYHLACPASPVHYKFNPV----KTIKTNVVGTLN 212
D + V + + A KT + NV+
Sbjct: 62 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFW 121
Query: 213 M------LGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVN 250
G + S + P + + V
Sbjct: 122 TTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAVG 165
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 447 | |||
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.97 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.92 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.92 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.92 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.91 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.9 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.85 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.85 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.84 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.84 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.84 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.83 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.83 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.83 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.83 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.83 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.83 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.83 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.83 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.83 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.83 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.83 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.83 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.82 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.82 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.82 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.82 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.81 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.81 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.81 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.81 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.8 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.8 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.8 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.8 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.8 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.79 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.79 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.79 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.78 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.78 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.78 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.78 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.78 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.78 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.78 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.78 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.78 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.77 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.77 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.77 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.76 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.76 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.74 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.73 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.72 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.72 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.71 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.71 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.7 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.7 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.7 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.69 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.69 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.68 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.64 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.61 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.61 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.61 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.59 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.58 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.55 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.48 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.47 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.99 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.0 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.97 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.97 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.81 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.81 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.68 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.66 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.65 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.64 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.63 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.61 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.6 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.58 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.56 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.51 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.48 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.46 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.41 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.4 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.4 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.39 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.32 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.32 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.26 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.15 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.09 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.07 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.05 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.04 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.93 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.93 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.92 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.8 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.8 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.76 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.73 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.71 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.66 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.66 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.6 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.6 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.58 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.35 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.34 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.21 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.19 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.14 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.13 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.11 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.0 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.97 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.95 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 95.88 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.87 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.79 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.78 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.74 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.64 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.55 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.52 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.52 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.4 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 95.37 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.28 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.17 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.1 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.06 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.05 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 94.97 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 94.94 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.8 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.75 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.73 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 94.62 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.54 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.45 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.36 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.23 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 94.17 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.15 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.14 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 94.02 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.9 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 93.89 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.87 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 93.86 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.83 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.81 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.75 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 93.73 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 93.72 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.67 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 93.58 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 93.55 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.55 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.51 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 93.47 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 93.45 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.37 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 93.35 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.26 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.17 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 93.09 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 92.94 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.92 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.92 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.88 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 92.86 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.84 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 92.81 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.75 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 92.63 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.61 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.51 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 92.42 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 92.37 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 92.36 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 92.25 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.24 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 92.12 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 92.06 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.05 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 91.84 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 91.83 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 91.75 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 91.71 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 91.59 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 91.59 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 91.57 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 91.55 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 91.54 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.49 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 91.37 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 90.87 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 90.82 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 90.63 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 90.47 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 90.17 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 89.86 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 89.83 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 89.67 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 89.41 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 89.35 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.22 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 89.01 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 88.9 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 88.81 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 88.09 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 88.04 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 87.99 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 87.79 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 87.39 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.33 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 86.98 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 86.97 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 86.3 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 86.01 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 85.43 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 85.39 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 85.22 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 85.14 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 85.08 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 85.0 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 85.0 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 84.94 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 84.85 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 84.46 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 83.96 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 83.52 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 82.85 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.58 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 82.34 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 82.29 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 82.0 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 81.87 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.64 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 80.67 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 80.16 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-51 Score=398.49 Aligned_cols=308 Identities=63% Similarity=1.070 Sum_probs=283.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCCCc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHY 195 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~~ 195 (447)
|+||||||+||||++|+++|+++|++|+++++........+.......++++.+.|+.+..+.++|+|||+|+......+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~~~~~~ 81 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNY 81 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcccCCchhH
Confidence 78999999999999999999999999999998666666555555566789999999999999999999999997665555
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 013226 196 KFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG 275 (447)
Q Consensus 196 ~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~ 275 (447)
..++.+.+++|+.|+.+|+++|++.++|+||+||.+|||.+...+++|+.+....|..|.+.|+.+|.++|.+++.+++.
T Consensus 82 ~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~ 161 (312)
T d2b69a1 82 MYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQ 161 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 66788899999999999999999999999999999999998888999988877778888899999999999999999999
Q ss_pred hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEecCCCc
Q 013226 276 LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNPGE 355 (447)
Q Consensus 276 ~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~~~~~ 355 (447)
++++++++||++||||++..+...+++.++.+++.++++.+++++.+.++|+|++|++++++.++++...+.||+++++.
T Consensus 162 ~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~~~~~~n~~~~~~ 241 (312)
T d2b69a1 162 EGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEE 241 (312)
T ss_dssp HCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSCCSCEEESCCCE
T ss_pred hCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhccCCceEecCCcc
Confidence 99999999999999999877777899999999999999999999999999999999999999999988889999999999
Q ss_pred cCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHhc
Q 013226 356 FTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 356 ~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~~ 423 (447)
+++.|+++.+.+.++.+..+.+.+....++....+|++|++++|||+|+++++|+|+++++||++++.
T Consensus 242 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 242 HTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp EEHHHHHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhCCCCceEECCCCCCCCCeeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998888877778888889999999999999999999999999999998753
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=5.9e-46 Score=360.53 Aligned_cols=300 Identities=29% Similarity=0.467 Sum_probs=258.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCe------EEEEecCCCC-CccccccccCCCceEEEeccccccc-----ccCCCEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDS------VIVVDNYFTG-KKDNLIHHFGNPRFELIRHDVVEPI-----LLEVDQI 183 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~------V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~-----~~~~d~V 183 (447)
|+||||||+||||++|+++|+++|++ |+.+++.... ....+.......++.++..|..+.. ...+|.|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v 80 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence 68999999999999999999999974 5556554322 2222333334568999999987653 4579999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHH
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK 262 (447)
||+|+.........++.+.+++|+.|+.+++++|++.++ +|||+||.++||.....+++|+ .+..|.+.|+.+|
T Consensus 81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~-----~~~~p~~~Y~~sK 155 (322)
T d1r6da_ 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASK 155 (322)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHHH
T ss_pred EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCC-----CCCCCCCHHHHHH
Confidence 999987665555667888999999999999999999998 9999999999999888889998 6778889999999
Q ss_pred HHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcC
Q 013226 263 RTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 263 ~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
..+|.+++.+.++++++++++||+++|||++. ...+++.++.++..++++.+++++++.++|+|++|+|+++..++++
T Consensus 156 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~--~~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~ 233 (322)
T d1r6da_ 156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQH--PEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAG 233 (322)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECEEECTTCC--TTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeeeEECcCCC--cCcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999863 3578999999999999999999999999999999999999999998
Q ss_pred CCCC-cEEecCCCccCHHHHHHHHHHHhCCCCc-EEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHH
Q 013226 343 DHVG-PFNLGNPGEFTMLELAEVVQEIIDRNAR-IEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRH 420 (447)
Q Consensus 343 ~~~g-~~~i~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~ 420 (447)
+..| +||+++++.+++.|+++.+.+.+|.+.. +...+..........+|++|++++|||+|+++++|+|+++++||++
T Consensus 234 ~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~eegI~~~i~w~~~ 313 (322)
T d1r6da_ 234 GRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRE 313 (322)
T ss_dssp CCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Confidence 7665 9999999999999999999999998865 3444445566667789999999999999999999999999999997
Q ss_pred Hh
Q 013226 421 RI 422 (447)
Q Consensus 421 ~~ 422 (447)
+.
T Consensus 314 n~ 315 (322)
T d1r6da_ 314 NR 315 (322)
T ss_dssp CH
T ss_pred hH
Confidence 53
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-44 Score=356.81 Aligned_cols=301 Identities=26% Similarity=0.326 Sum_probs=239.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc----ccccc--ccCCCceEEEecccccccc-----c--CCCE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK----DNLIH--HFGNPRFELIRHDVVEPIL-----L--EVDQ 182 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~----~~~~~--~~~~~~v~~~~~D~~~~~~-----~--~~d~ 182 (447)
|+|||||||||||++|+++|+++|++|++++|...... +.+.. .....++.++++|+.+... . ++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 78999999999999999999999999999999643211 11111 1234578999999987642 2 5799
Q ss_pred EEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC----eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChH
Q 013226 183 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCY 258 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~----r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y 258 (447)
|||+||.........++...+++|+.||.+|+++|++.++ ||||+||.+|||.+...+++|+ .+..|.+.|
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~-----~~~~P~~~Y 156 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPY 156 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCSHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCC-----CCCCCCChH
Confidence 9999998776666678889999999999999999998763 6999999999999888899998 566778999
Q ss_pred HHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCC-CeEEecCCCeeEccccHHHHHHHH
Q 013226 259 DEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKE-PLTVYGDGKQTRSFQFVSDLVEGL 336 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~ai 336 (447)
+.||..+|.+++.++++++++++++||+++|||+..... ...+..++.....+. ....++++++.++|+||+|+|+++
T Consensus 157 ~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~ 236 (357)
T d1db3a_ 157 AVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQ 236 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHH
Confidence 999999999999999999999999999999999754322 234445555555554 456678999999999999999999
Q ss_pred HHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCC-------------------------------CCCCC
Q 013226 337 IRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPN-------------------------------TEDDP 385 (447)
Q Consensus 337 ~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-------------------------------~~~~~ 385 (447)
+.+++++..+.||+++++.+|+.|+++.+.+.+|....+...+. ...+.
T Consensus 237 ~~~~~~~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 316 (357)
T d1db3a_ 237 WMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEV 316 (357)
T ss_dssp HHTTSSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC-
T ss_pred HHHHhCCCCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEeeccccCCCccc
Confidence 99999888889999999999999999999999986544311000 01122
Q ss_pred CcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHH
Q 013226 386 HKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 386 ~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~ 421 (447)
....+|++|++++|||+|+++++|+|+++++++.+.
T Consensus 317 ~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~ 352 (357)
T d1db3a_ 317 ETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEA 352 (357)
T ss_dssp CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHH
Confidence 234569999999999999999999999999876543
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=2.5e-44 Score=354.59 Aligned_cols=304 Identities=25% Similarity=0.434 Sum_probs=250.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeE-EEEecCCCC-CccccccccCCCceEEEecccccccc-------cCCCEEEEe
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSV-IVVDNYFTG-KKDNLIHHFGNPRFELIRHDVVEPIL-------LEVDQIYHL 186 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V-~~l~r~~~~-~~~~~~~~~~~~~v~~~~~D~~~~~~-------~~~d~Vih~ 186 (447)
|+||||||+||||++|+++|+++|++| +++++.... ....+.......+++++.+|+++... .++|+|||+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence 689999999999999999999999975 445553222 22334444456689999999987742 258999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC---------C-eEEEEeCccccCCCCCCCCCCCcC-----CCCCC
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG---------A-RFLLTSTSEVYGDPLQHPQAETYW-----GNVNP 251 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g---------~-r~v~~SS~~v~g~~~~~~~~e~~~-----~~~~~ 251 (447)
||.........++...+++|+.|+.+++++|++.+ + +||++||..+||.....+..|+.. ....+
T Consensus 81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~ 160 (361)
T d1kewa_ 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA 160 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred ccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCCC
Confidence 99766555556788899999999999999998754 2 899999999999765544433321 12356
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHH
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 331 (447)
..|.+.|+.+|.++|.++..+.+.++++++++||++||||++. ...+++.++.+++.++++.+++++++.++|+|++|
T Consensus 161 ~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~--~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D 238 (361)
T d1kewa_ 161 YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF--PEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVED 238 (361)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC--TTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCC--cCcHHHHHHHHHHcCCCcEEeCCCCeEEeCEEHHH
Confidence 6788999999999999999999999999999999999999863 35688999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCC-CcEEecCCCccCHHHHHHHHHHHhCCC--------CcEEecCCCCCCCCcccCChHHHHHHcCCC
Q 013226 332 LVEGLIRLMEGDHV-GPFNLGNPGEFTMLELAEVVQEIIDRN--------ARIEFRPNTEDDPHKRKPDITKAKQLLGWE 402 (447)
Q Consensus 332 ~a~ai~~~l~~~~~-g~~~i~~~~~~s~~el~~~i~~~~g~~--------~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 402 (447)
+|++++.++++... ++|||++++.+++.|+++.+.+.++.. ..+...+..........+|++|++++|||+
T Consensus 239 ~a~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~ 318 (361)
T d1kewa_ 239 HARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWK 318 (361)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHHHHCCC
T ss_pred HHHHHHHHHhcCCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCHHHHHHHHCCC
Confidence 99999999987655 499999999999999999998876432 234555555566677789999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHH
Q 013226 403 PRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 403 p~~s~~e~l~~~~~~~~~~ 421 (447)
|+++++|+|+++++||+++
T Consensus 319 P~~~l~e~i~~ti~w~~~n 337 (361)
T d1kewa_ 319 PLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp CSCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999765
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.6e-43 Score=345.92 Aligned_cols=304 Identities=25% Similarity=0.358 Sum_probs=257.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc------cccCCCceEEEeccccccc-----ccCCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI------HHFGNPRFELIRHDVVEPI-----LLEVD 181 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~------~~~~~~~v~~~~~D~~~~~-----~~~~d 181 (447)
.+.|+|||||||||||++|+++|+++|++|++++|........+. .......+.++.+|..+.. ..+.+
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~ 93 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 93 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence 466899999999999999999999999999999985443322111 1112346889999997763 45689
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHH
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDE 260 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~ 260 (447)
.|+|+++.........++...+++|+.|+.+|+++|++.++ +|||+||.++||.....+++|+ .+..|.+.|+.
T Consensus 94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~ 168 (341)
T d1sb8a_ 94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLSPYAV 168 (341)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHHHH
T ss_pred ccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCC-----CCCCCCCcchH
Confidence 99999987665556677888999999999999999999998 9999999999999888899998 67778899999
Q ss_pred HHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC--CchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHH
Q 013226 261 GKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIR 338 (447)
Q Consensus 261 sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~ 338 (447)
+|..+|.+++.+.+..+++++++||+++|||+..+.. ..++..++..++.++++.+++++.+.++|+||+|+|.++..
T Consensus 169 sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~ 248 (341)
T d1sb8a_ 169 TKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLL 248 (341)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhh
Confidence 9999999999999999999999999999999876443 45788999999999999999999999999999999999999
Q ss_pred HHcCCC---CCcEEecCCCccCHHHHHHHHHHHhCCCCc-----EEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHH
Q 013226 339 LMEGDH---VGPFNLGNPGEFTMLELAEVVQEIIDRNAR-----IEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKG 410 (447)
Q Consensus 339 ~l~~~~---~g~~~i~~~~~~s~~el~~~i~~~~g~~~~-----~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~ 410 (447)
++.... .+.||+++++.+|+.|+++.|.+.++.+.. ....+....+......|++|+++.|||+|+++++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~p~~sl~~g 328 (341)
T d1sb8a_ 249 AATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKYDVSAG 328 (341)
T ss_dssp HHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCCCCHHHH
T ss_pred hhhccccccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHCCCcCCCHHHH
Confidence 887653 349999999999999999999999975432 223333445556677899999999999999999999
Q ss_pred HHHHHHHHHHH
Q 013226 411 LPLMVADFRHR 421 (447)
Q Consensus 411 l~~~~~~~~~~ 421 (447)
|+++++||++.
T Consensus 329 i~~ti~wy~~~ 339 (341)
T d1sb8a_ 329 VALAMPWYIMF 339 (341)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999975
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.4e-43 Score=345.65 Aligned_cols=304 Identities=27% Similarity=0.419 Sum_probs=250.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~Ag 188 (447)
++|+|||||||||||++|+++|+++|++|+++++......... . ....+...|+.+. .+.++|.|||+|+
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~ 88 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED---M--FCDEFHLVDLRVMENCLKVTEGVDHVFNLAA 88 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG---G--TCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhh---c--ccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence 7889999999999999999999999999999988544322221 1 2345566666543 4568999999998
Q ss_pred CCCCCCc-ccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcC--CCCCCCCCCChHHHHHHH
Q 013226 189 PASPVHY-KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYW--GNVNPIGVRSCYDEGKRT 264 (447)
Q Consensus 189 ~~~~~~~-~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~--~~~~~~~~~~~Y~~sK~~ 264 (447)
....... ...+...+..|+.|+.+++++|++.++ +||++||..+|+.....+.+|... ....+..|.+.|+.+|..
T Consensus 89 ~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK~~ 168 (363)
T d2c5aa1 89 DMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLA 168 (363)
T ss_dssp CCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHHHHHH
Confidence 6554332 346778899999999999999999998 999999999999777666665532 234567778999999999
Q ss_pred HHHHHHHHHhhhCCcEEEEeeccccCCCCccCC---CchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHc
Q 013226 265 AETLTMDYHRGLGIEARIARIFNTYGPRMCIDD---GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLME 341 (447)
Q Consensus 265 ~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~ 341 (447)
+|.+++.+.++++++++++||+++|||++.... ......+........+...++++.+.++|+|++|++++++.+++
T Consensus 169 ~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~ 248 (363)
T d2c5aa1 169 TEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTK 248 (363)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhHHHHHHHHHHh
Confidence 999999999999999999999999999765322 22334455556667778889999999999999999999999999
Q ss_pred CCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHH
Q 013226 342 GDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 342 ~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~ 421 (447)
++..++||+++++.+++.|+++.+.+.+|.+.++...+.+. +......|++|++++|||+|+++++|+|+++++||+++
T Consensus 249 ~~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~~-~~~~~~~d~ska~~~LGw~p~~sleegi~~ti~w~~~~ 327 (363)
T d2c5aa1 249 SDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQ 327 (363)
T ss_dssp SSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC-CCSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCCCC-CccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999998887766553 44556689999999999999999999999999999887
Q ss_pred hc
Q 013226 422 IF 423 (447)
Q Consensus 422 ~~ 423 (447)
..
T Consensus 328 ~~ 329 (363)
T d2c5aa1 328 IE 329 (363)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=2.6e-42 Score=338.07 Aligned_cols=305 Identities=24% Similarity=0.374 Sum_probs=248.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC--CCCCccccccccCCCceEEEecccccc-----cccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY--FTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~--~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A 187 (447)
+|+|||||||||||++|+++|+++|++|.+++++ ...............+++++.+|+.+. ++.++|.|+|+|
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~a 81 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYA 81 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhhh
Confidence 6899999999999999999999999876555443 222222222233456899999999765 346799999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCC---CCCC----CCcCCCCCCCCCCChHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ---HPQA----ETYWGNVNPIGVRSCYDE 260 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~---~~~~----e~~~~~~~~~~~~~~Y~~ 260 (447)
+......+..++.+.+++|+.|+.+++++++..+.++|++||..+||.... .+.. ...+....+..|.+.|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y~~ 161 (346)
T d1oc2a_ 82 AESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSS 161 (346)
T ss_dssp SCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHHH
T ss_pred hcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHHHH
Confidence 877665556678889999999999999999999999999999999984211 1111 111111256667799999
Q ss_pred HHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHH
Q 013226 261 GKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLM 340 (447)
Q Consensus 261 sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l 340 (447)
+|..+|.+++.+.++.+++++++||+++|||+. .....+..++.....+.++.+++++++.++|+|++|+|++++.++
T Consensus 162 sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~--~~~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~ 239 (346)
T d1oc2a_ 162 TKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ--HIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAIL 239 (346)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC--CTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC--CccchhHHHHHHHHcCCceeEeCCCCccccccchhhHHHHHHHHH
Confidence 999999999999999999999999999999975 335677888888899999999999999999999999999999998
Q ss_pred cCCCC-CcEEecCCCccCHHHHHHHHHHHhCCCC-cEEecCCCCCCCCcccCChHHHHHHcCCCccC-CHHHHHHHHHHH
Q 013226 341 EGDHV-GPFNLGNPGEFTMLELAEVVQEIIDRNA-RIEFRPNTEDDPHKRKPDITKAKQLLGWEPRV-TLRKGLPLMVAD 417 (447)
Q Consensus 341 ~~~~~-g~~~i~~~~~~s~~el~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-s~~e~l~~~~~~ 417 (447)
+++.. +.||+++++..++.|+++.|.+.++.+. .+...+...........|++|++++|||+|++ +++|+|+++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~P~~t~l~e~i~~ti~w 319 (346)
T d1oc2a_ 240 TKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQW 319 (346)
T ss_dssp HHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHH
T ss_pred hhcccCccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHHHHCCCCcCCCHHHHHHHHHHH
Confidence 87765 5899999999999999999999998764 45555555566667778999999999999997 599999999999
Q ss_pred HHHH
Q 013226 418 FRHR 421 (447)
Q Consensus 418 ~~~~ 421 (447)
|+++
T Consensus 320 ~~~n 323 (346)
T d1oc2a_ 320 YTDN 323 (346)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9975
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-42 Score=337.18 Aligned_cols=302 Identities=25% Similarity=0.404 Sum_probs=247.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc--cccCCCceEEEeccccccc-----cc--CCCEEEEe
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI--HHFGNPRFELIRHDVVEPI-----LL--EVDQIYHL 186 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~D~~~~~-----~~--~~d~Vih~ 186 (447)
|+||||||+||||++|++.|+++|++|++++|.......... ......++.++.+|+++.. +. ++|+|||+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl 80 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence 689999999999999999999999999999986554433222 1223457999999998764 22 69999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTA 265 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~ 265 (447)
||.........++.+.+++|+.||.+++++|++.++ +||++||.++|+.....+..|.. ....|.+.|+.+|..+
T Consensus 81 Aa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~----~~~~p~~~Y~~sK~~~ 156 (338)
T d1udca_ 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF----PTGTPQSPYGKSKLMV 156 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS----CCCCCSSHHHHHHHHH
T ss_pred CCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccccccccc----ccCCCcchHHHHHhhh
Confidence 997654445557889999999999999999999998 99999999999876666655553 4556779999999999
Q ss_pred HHHHHHHHhh-hCCcEEEEeeccccCCCCccC--------CCchHHHHHHHHHhC-CCeEEecC------CCeeEccccH
Q 013226 266 ETLTMDYHRG-LGIEARIARIFNTYGPRMCID--------DGRVVSNFVAQALRK-EPLTVYGD------GKQTRSFQFV 329 (447)
Q Consensus 266 E~~~~~~~~~-~~i~~~ivRp~~i~Gp~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~i~v 329 (447)
|.++.++... .+++++++||+++|||+.... ...++..++.....+ +++.++|+ +.+.++|+|+
T Consensus 157 e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v 236 (338)
T d1udca_ 157 EQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236 (338)
T ss_dssp HHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEH
T ss_pred hHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEE
Confidence 9999977654 589999999999999875421 134566666655543 46777664 6778999999
Q ss_pred HHHHHHHHHHHcCC---C-CCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccC
Q 013226 330 SDLVEGLIRLMEGD---H-VGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRV 405 (447)
Q Consensus 330 ~D~a~ai~~~l~~~---~-~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~ 405 (447)
+|++.++..++... . .++||+++++++|+.|+++.+.+.+|.+..+.+.+....+.....+|++|++++|||+|++
T Consensus 237 ~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgwkp~~ 316 (338)
T d1udca_ 237 MDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTR 316 (338)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCCC
T ss_pred eehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCCCCCCCCEeeECHHHHHHHHCCCcCC
Confidence 99998887766532 2 2489999999999999999999999999888888877777777889999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 013226 406 TLRKGLPLMVADFRHR 421 (447)
Q Consensus 406 s~~e~l~~~~~~~~~~ 421 (447)
+++|+|+++++|++++
T Consensus 317 ~l~egi~~ti~w~~~~ 332 (338)
T d1udca_ 317 TLDEMAQDTWHWQSRH 332 (338)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999999986
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=4.1e-42 Score=332.66 Aligned_cols=302 Identities=23% Similarity=0.295 Sum_probs=246.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc-cccccCCCceEEEecccccccc-------cCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN-LIHHFGNPRFELIRHDVVEPIL-------LEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~-~~~~~~~~~v~~~~~D~~~~~~-------~~~d~Vih~A 187 (447)
|+|||||||||||++|+++|+++|++|++++|........ +.......++.++.+|+.+... ...++++|+|
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~a 80 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLA 80 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccccc
Confidence 6899999999999999999999999999999975543322 2222234578999999987642 2478889998
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTA 265 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~ 265 (447)
+.........++.+.++.|+.|+.+++++|++.++ +|++.||..+||.......+|+ .+..|.+.|+.+|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~-----~~~~p~~~Y~~sK~~~ 155 (321)
T d1rpna_ 81 AQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLYG 155 (321)
T ss_dssp SCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHHHHH
T ss_pred ccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCC-----CCccccChhHHHHHHH
Confidence 86655555567888999999999999999999885 7888888889998888888888 6777889999999999
Q ss_pred HHHHHHHHhhhCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHh-CCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 266 ETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALR-KEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 266 E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
|.++..+..+++++++++||+++|||....+. .+.+..++.+... +.+...++++++.++|+|++|+|++++.+++++
T Consensus 156 E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~ 235 (321)
T d1rpna_ 156 HWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQD 235 (321)
T ss_dssp HHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcC
Confidence 99999999999999999999999999754322 1233344444444 445566899999999999999999999999999
Q ss_pred CCCcEEecCCCccCHHHHHHHHHHHhCCCCc--EEecC--CCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHH
Q 013226 344 HVGPFNLGNPGEFTMLELAEVVQEIIDRNAR--IEFRP--NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419 (447)
Q Consensus 344 ~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~--~~~~~--~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~ 419 (447)
..+.||+++++.+++.++++.+.+.++.+.. ....+ ....+......|++|++++|||+|+++++|+|++|++|+.
T Consensus 236 ~~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~e~i~~tv~~~l 315 (321)
T d1rpna_ 236 KADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADL 315 (321)
T ss_dssp SCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred CcCCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999987643 22222 1223445567799999999999999999999999999998
Q ss_pred HHh
Q 013226 420 HRI 422 (447)
Q Consensus 420 ~~~ 422 (447)
++.
T Consensus 316 ~~~ 318 (321)
T d1rpna_ 316 RRV 318 (321)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-42 Score=335.32 Aligned_cols=304 Identities=25% Similarity=0.406 Sum_probs=249.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccc------cccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP------ILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~Ag 188 (447)
|+|||||||||||++|+++|+++|+ +|+++++..+.. .......+++++.+|+++. ...++|+|||+|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~----~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~ 76 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI----SRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGG----GGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcch----hhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence 6899999999999999999999995 899998753322 2223456899999998764 3346999999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCC--CCCCCCCChHHHHHHHHH
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGN--VNPIGVRSCYDEGKRTAE 266 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~--~~~~~~~~~Y~~sK~~~E 266 (447)
.........++...+.+|+.|+.+++++|.+.+++++++||..+|+........|..... .....|.+.|+.||..+|
T Consensus 77 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E 156 (342)
T d2blla1 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD 156 (342)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred cccccccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcchhhhcccchh
Confidence 876666666788899999999999999999999999999999999987776666654321 233456688999999999
Q ss_pred HHHHHHHhhhCCcEEEEeeccccCCCCccC------CCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHH
Q 013226 267 TLTMDYHRGLGIEARIARIFNTYGPRMCID------DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLM 340 (447)
Q Consensus 267 ~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l 340 (447)
.++..+.+.++++++++||+.+|||+.... ....+..++.+++.++++.+++++++.++|+|++|+|+++..++
T Consensus 157 ~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~ 236 (342)
T d2blla1 157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236 (342)
T ss_dssp HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHH
T ss_pred hhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeeh
Confidence 999999999999999999999999975432 23467889999999999999999999999999999999999999
Q ss_pred cCCC----CCcEEecCCC-ccCHHHHHHHHHHHhCCCCcEEecCC---------------CCCCCCcccCChHHHHHHcC
Q 013226 341 EGDH----VGPFNLGNPG-EFTMLELAEVVQEIIDRNARIEFRPN---------------TEDDPHKRKPDITKAKQLLG 400 (447)
Q Consensus 341 ~~~~----~g~~~i~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~---------------~~~~~~~~~~d~~k~~~~lG 400 (447)
+++. .++||+++++ .+|+.|+++.|.+.++........+. ...++.....|++|++++||
T Consensus 237 ~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 316 (342)
T d2blla1 237 ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLD 316 (342)
T ss_dssp HCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBCCHHHHHHHC
T ss_pred hhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccccccccccccccCHHHHHHHHC
Confidence 8742 2499998776 48999999999999987654432221 11233455679999999999
Q ss_pred CCccCCHHHHHHHHHHHHHHHhc
Q 013226 401 WEPRVTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 401 ~~p~~s~~e~l~~~~~~~~~~~~ 423 (447)
|+|+++++|+|+++++||+++..
T Consensus 317 w~P~~sleegl~~ti~~y~~~~~ 339 (342)
T d2blla1 317 WEPKIDMQETIDETLDFFLRTVD 339 (342)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHSC
T ss_pred CCcCCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999999998864
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-41 Score=327.97 Aligned_cols=300 Identities=24% Similarity=0.271 Sum_probs=242.5
Q ss_pred CeE-EEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc-cccc---c---cCCCceEEEecccccccc-------cCC
Q 013226 116 LRI-LVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD-NLIH---H---FGNPRFELIRHDVVEPIL-------LEV 180 (447)
Q Consensus 116 ~~i-lVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~-~~~~---~---~~~~~v~~~~~D~~~~~~-------~~~ 180 (447)
|+| |||||+||||++|+++|+++||+|++++|....... .+.. . ....+++++.+|+++... .++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 567 999999999999999999999999999996543221 1111 1 112468999999987632 358
Q ss_pred CEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC----eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCC
Q 013226 181 DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA----RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRS 256 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~----r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~ 256 (447)
++|+|+|+.........++...+++|+.||.+++++|+++++ +|||+||.+|||.+...+++|+ .+..|.+
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~P~~ 155 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRS 155 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCCS
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCC-----CCCCCCC
Confidence 899999987655554556777889999999999999999874 7999999999999888899998 5777889
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC--CchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHH
Q 013226 257 CYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD--GRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334 (447)
Q Consensus 257 ~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 334 (447)
.|+.||.++|++++.+.+.++++++++||+++|||+..... ..+...++.......++..++++.+.++|+|++|+++
T Consensus 156 ~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~ 235 (347)
T d1t2aa_ 156 PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE 235 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHHH
Confidence 99999999999999999999999999999999999764332 2334455566667788888999999999999999999
Q ss_pred HHHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCC---------------------CCCCCCcccCChH
Q 013226 335 GLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPN---------------------TEDDPHKRKPDIT 393 (447)
Q Consensus 335 ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~---------------------~~~~~~~~~~d~~ 393 (447)
++..++++...+.|++......++.+..+.+...++........+. ...+.....+|++
T Consensus 236 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~s 315 (347)
T d1t2aa_ 236 AMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCT 315 (347)
T ss_dssp HHHHHHHSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCH
T ss_pred HHHHHhhcCCCccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCCCcCEeeECHH
Confidence 9999999988889999999999999999999999887643321110 0122234467999
Q ss_pred HHHHHcCCCccCCHHHHHHHHHHHHHH
Q 013226 394 KAKQLLGWEPRVTLRKGLPLMVADFRH 420 (447)
Q Consensus 394 k~~~~lG~~p~~s~~e~l~~~~~~~~~ 420 (447)
|++++|||+|+++++|+|++|++++.+
T Consensus 316 kak~~Lgw~P~~sl~e~i~~~I~~~~~ 342 (347)
T d1t2aa_ 316 KAKQKLNWKPRVAFDELVREMVHADVE 342 (347)
T ss_dssp HHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999987654
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-40 Score=318.95 Aligned_cols=292 Identities=24% Similarity=0.360 Sum_probs=236.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--ccCCCEEEEeccCCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--LLEVDQIYHLACPASP 192 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--~~~~d~Vih~Ag~~~~ 192 (447)
.|+|||||||||||++|+++|+++|+.|++++++.. +++.+.+..+.. ...+|.|||+|+....
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~--------------~~~~~~~~~~~~~~~~~~d~v~~~a~~~~~ 67 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE--------------LNLLDSRAVHDFFASERIDQVYLAAAKVGG 67 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT--------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh--------------ccccCHHHHHHHHhhcCCCEEEEcchhccc
Confidence 468999999999999999999999999988765321 111111111112 1358999999976432
Q ss_pred C-CcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHH
Q 013226 193 V-HYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTM 270 (447)
Q Consensus 193 ~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 270 (447)
. ....++.+.+++|+.||.+++++|++.++ ||||+||.++||.....+++|+......+..+.+.|+.||.++|++++
T Consensus 68 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 147 (315)
T d1e6ua_ 68 IVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCE 147 (315)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 2 22345667889999999999999999998 999999999999888888888865444455555789999999999999
Q ss_pred HHHhhhCCcEEEEeeccccCCCCccCC--Cch-----HHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 271 DYHRGLGIEARIARIFNTYGPRMCIDD--GRV-----VSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 271 ~~~~~~~i~~~ivRp~~i~Gp~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
.+.++++++++++||++||||+..... ..+ ...+......+..+.+++++...++|+|++|++.++..+++..
T Consensus 148 ~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~~~~~~~ 227 (315)
T d1e6ua_ 148 SYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 227 (315)
T ss_dssp HHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSC
T ss_pred HHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHHHhhhhc
Confidence 999999999999999999999865432 222 2333455667788889999999999999999999999998653
Q ss_pred ----------CCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHH
Q 013226 344 ----------HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPL 413 (447)
Q Consensus 344 ----------~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~ 413 (447)
..+.++++.+...++.++++.+.+.+|.+..+.+.+..........+|++|+++ |||+|+++++|+|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d~sk~k~-Lg~~p~~~l~e~i~~ 306 (315)
T d1e6ua_ 228 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQ-LGWYHEISLEAGLAS 306 (315)
T ss_dssp HHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHH-TTCCCCCCHHHHHHH
T ss_pred cccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccCHHHHHH-cCCCCCCCHHHHHHH
Confidence 235899999999999999999999999998888777666666667889999974 999999999999999
Q ss_pred HHHHHHHH
Q 013226 414 MVADFRHR 421 (447)
Q Consensus 414 ~~~~~~~~ 421 (447)
+++||+++
T Consensus 307 ti~w~~~N 314 (315)
T d1e6ua_ 307 TYQWFLEN 314 (315)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99999865
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-40 Score=323.25 Aligned_cols=301 Identities=22% Similarity=0.334 Sum_probs=233.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccc--cccCCCceEEEecccccccc-------cCCCEEEEe
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLI--HHFGNPRFELIRHDVVEPIL-------LEVDQIYHL 186 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~D~~~~~~-------~~~d~Vih~ 186 (447)
|.||||||+||||++|+++|+++|++|+++++.......... ......++.++.+|+.+... .++|+|||+
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 81 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence 679999999999999999999999999999875444333221 12234578899999977642 279999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCC----CCCCCCcCCCCCCCCCCChHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQ----HPQAETYWGNVNPIGVRSCYDEG 261 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~----~~~~e~~~~~~~~~~~~~~Y~~s 261 (447)
|+.........++.....+|+.|+.+++++|++.++ +||++||..+||.... .+++|+ .+..|.+.|+.+
T Consensus 82 Aa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~-----~~~~p~~~Y~~s 156 (347)
T d1z45a2 82 AGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNPYGHT 156 (347)
T ss_dssp CSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSHHHHH
T ss_pred cccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccc-----cCCCCCChhHhH
Confidence 997765555667788999999999999999999997 9999999999986543 345555 567778999999
Q ss_pred HHHHHHHHHHHHh--hhCCcEEEEeeccccCCCCcc--------CCCchHHHHHHHHHh-CCCeEEecCC------CeeE
Q 013226 262 KRTAETLTMDYHR--GLGIEARIARIFNTYGPRMCI--------DDGRVVSNFVAQALR-KEPLTVYGDG------KQTR 324 (447)
Q Consensus 262 K~~~E~~~~~~~~--~~~i~~~ivRp~~i~Gp~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~ 324 (447)
|..+|.+++++.+ ..+++++++||+++||+.... ....++..++..... ++++.+++++ ...+
T Consensus 157 K~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~ 236 (347)
T d1z45a2 157 KYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIR 236 (347)
T ss_dssp HHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEE
T ss_pred HHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceee
Confidence 9999999999865 458999999999999975421 122355555554443 4456666553 4567
Q ss_pred ccccHHHHHHHHHHHHcCC--------CCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHH
Q 013226 325 SFQFVSDLVEGLIRLMEGD--------HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAK 396 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~--------~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~ 396 (447)
+++++.|++.+++.+++.. ..++||+++++++|+.|+++.+.+.+|.+..+.+.+....+......|++|++
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~~ 316 (347)
T d1z45a2 237 DYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAK 316 (347)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCHHHH
T ss_pred eeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCCCCCCCCEeeECHHHHH
Confidence 8999999999988887631 12589999999999999999999999998888777766666777788999999
Q ss_pred HHcCCCccCCHHHHHHHHHHHHHHH
Q 013226 397 QLLGWEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 397 ~~lG~~p~~s~~e~l~~~~~~~~~~ 421 (447)
++|||+|+++++|+|+++++|++++
T Consensus 317 ~~lGw~p~~~lee~i~~ti~w~~~n 341 (347)
T d1z45a2 317 RELKWQTELQVEDSCKDLWKWTTEN 341 (347)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-39 Score=316.87 Aligned_cols=303 Identities=23% Similarity=0.370 Sum_probs=241.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc------c--ccccCCCceEEEecccccccc-------cC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN------L--IHHFGNPRFELIRHDVVEPIL-------LE 179 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~------~--~~~~~~~~v~~~~~D~~~~~~-------~~ 179 (447)
.|+|||||||||||++|+++|+++|++|+++++........ . .......++.++.+|+++... ..
T Consensus 2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 81 (346)
T d1ek6a_ 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS 81 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccccc
Confidence 36899999999999999999999999999998643321110 0 011234678999999987632 24
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChH
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCY 258 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y 258 (447)
+++|+|+||.........++.+.+++|+.|+.++++++++.++ +|+++||+.+|+........++. ....+.++|
T Consensus 82 ~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~----~~~~~~~~Y 157 (346)
T d1ek6a_ 82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH----PTGGCTNPY 157 (346)
T ss_dssp EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS----CCCCCSSHH
T ss_pred cccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccc----cccccCChH
Confidence 6789999998765555567888999999999999999999998 99999999999876554433331 234456889
Q ss_pred HHHHHHHHHHHHHHHhh-hCCcEEEEeeccccCCCCcc--------CCCchHHHHHHHHHh-CCCeEEec------CCCe
Q 013226 259 DEGKRTAETLTMDYHRG-LGIEARIARIFNTYGPRMCI--------DDGRVVSNFVAQALR-KEPLTVYG------DGKQ 322 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~-~~i~~~ivRp~~i~Gp~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~------~~~~ 322 (447)
+.+|..+|..+.++.+. .+++.+++||+++|||.... ....++..++..... +.++.+++ ++.+
T Consensus 158 ~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~ 237 (346)
T d1ek6a_ 158 GKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCe
Confidence 99999999999998764 58999999999999986532 123345555554443 45566554 4567
Q ss_pred eEccccHHHHHHHHHHHHcCC----CCCcEEecCCCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHH
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD----HVGPFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQL 398 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~----~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 398 (447)
.++|+|++|+|.++..+++.. ..++||+++++.+++.|+++.|.+.+|.+.++.+.+....+......|++|++++
T Consensus 238 ~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~~~e~~~~~~d~~k~~~~ 317 (346)
T d1ek6a_ 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEE 317 (346)
T ss_dssp EECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHT
T ss_pred eEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCCCCCCCEeeECHHHHHHH
Confidence 889999999999988875532 2248999999999999999999999999998888887777777888999999999
Q ss_pred cCCCccCCHHHHHHHHHHHHHHH
Q 013226 399 LGWEPRVTLRKGLPLMVADFRHR 421 (447)
Q Consensus 399 lG~~p~~s~~e~l~~~~~~~~~~ 421 (447)
|||+|+++++|+|+++++|++++
T Consensus 318 lgw~p~~slee~I~~~i~w~~~n 340 (346)
T d1ek6a_ 318 LGWTAALGLDRMCEDLWRWQKQN 340 (346)
T ss_dssp TCCCCCCCHHHHHHHHHHHHHHC
T ss_pred HCCCcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999976
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=1.2e-38 Score=316.11 Aligned_cols=308 Identities=23% Similarity=0.346 Sum_probs=238.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEecCCCCCc--------cc----------cccccCCCceEEEeccccc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMD-RGDSVIVVDNYFTGKK--------DN----------LIHHFGNPRFELIRHDVVE 174 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~-~G~~V~~l~r~~~~~~--------~~----------~~~~~~~~~v~~~~~D~~~ 174 (447)
++|+||||||+||||++|+++|++ .|++|+++|+-..... +. .........+.++.+|+++
T Consensus 1 ~~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence 368999999999999999999996 6899999985222110 00 0011123467899999987
Q ss_pred cc--------ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCC--C
Q 013226 175 PI--------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQA--E 243 (447)
Q Consensus 175 ~~--------~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~--e 243 (447)
.. ..++|+|||+|+.........++...+++|+.++.++++++++.++ +++++||..+|+........ +
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccc
Confidence 53 2468999999997765555567778899999999999999999998 89999999988754432211 1
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC-------CchHHHHHHHHH-------
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-------GRVVSNFVAQAL------- 309 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-------~~~~~~~~~~~~------- 309 (447)
+......+..|.+.|+.+|..+|.+++++.+.++++++++||+++|||++.... ..+++.++..+.
T Consensus 161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~ 240 (383)
T d1gy8a_ 161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240 (383)
T ss_dssp CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-
T ss_pred cccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhccccc
Confidence 111122567788999999999999999999999999999999999999876432 233444433332
Q ss_pred ---------hCCCeEEec------CCCeeEccccHHHHHHHHHHHHcCC----------CCCcEEecCCCccCHHHHHHH
Q 013226 310 ---------RKEPLTVYG------DGKQTRSFQFVSDLVEGLIRLMEGD----------HVGPFNLGNPGEFTMLELAEV 364 (447)
Q Consensus 310 ---------~~~~~~~~~------~~~~~~~~i~v~D~a~ai~~~l~~~----------~~g~~~i~~~~~~s~~el~~~ 364 (447)
.+.++.+++ ++.+.++|+|++|+|++++.+++.. ..++||+++++++++.|+++.
T Consensus 241 ~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el~~~ 320 (383)
T d1gy8a_ 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEV 320 (383)
T ss_dssp ----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHHHHH
T ss_pred cchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHHHHH
Confidence 345556654 4678899999999999999988631 124899999999999999999
Q ss_pred HHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHH-HHHHHHH
Q 013226 365 VQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLM-VADFRHR 421 (447)
Q Consensus 365 i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~-~~~~~~~ 421 (447)
+.+.+|.+..+...+....+......|++|++++|||+|+++++|+|+++ +.|++++
T Consensus 321 i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~ 378 (383)
T d1gy8a_ 321 ARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH 378 (383)
T ss_dssp HHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCCceEECCCCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhC
Confidence 99999999888887777777777888999999999999999999999887 4777664
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1e-38 Score=310.87 Aligned_cols=301 Identities=22% Similarity=0.312 Sum_probs=236.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc----ccc---ccccCCCceEEEecccccccc-------cCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK----DNL---IHHFGNPRFELIRHDVVEPIL-------LEVD 181 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~----~~~---~~~~~~~~v~~~~~D~~~~~~-------~~~d 181 (447)
|++||||||||||++|+++|+++||+|++++|...... ..+ ........+.+..+|+.+... .++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 68999999999999999999999999999999643211 111 111233467889999977532 3689
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-----C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCC
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-----A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVR 255 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-----~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~ 255 (447)
+|||+|+.........++...+..|+.|+.++++++++.. . ++++.||..+|+. ...+++|+ .+..|.
T Consensus 82 ~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~-~~~~~~E~-----~~~~p~ 155 (339)
T d1n7ha_ 82 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGS-TPPPQSET-----TPFHPR 155 (339)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTT-SCSSBCTT-----SCCCCC
T ss_pred hhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceeccc-CCCCCCCC-----CCCCCc
Confidence 9999999765555556788899999999999999987642 2 6777888777765 34567787 677788
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCC-CchHHH-HHHHHHhCCCeEEecCCCeeEccccHHHHH
Q 013226 256 SCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDD-GRVVSN-FVAQALRKEPLTVYGDGKQTRSFQFVSDLV 333 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 333 (447)
+.|+.+|..+|.++..+.+.++++++++||+++|||...... ...+.. +............++++.+.++|+|++|+|
T Consensus 156 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a 235 (339)
T d1n7ha_ 156 SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYV 235 (339)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehHH
Confidence 999999999999999999999999999999999999754221 112222 223344455666778899999999999999
Q ss_pred HHHHHHHcCCCCCcEEecCCCccCHHHHHHHHHHHhCCCCc--EEec--CCCCCCCCcccCChHHHHHHcCCCccCCHHH
Q 013226 334 EGLIRLMEGDHVGPFNLGNPGEFTMLELAEVVQEIIDRNAR--IEFR--PNTEDDPHKRKPDITKAKQLLGWEPRVTLRK 409 (447)
Q Consensus 334 ~ai~~~l~~~~~g~~~i~~~~~~s~~el~~~i~~~~g~~~~--~~~~--~~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e 409 (447)
+++..+++++..+.+++..+...++.++++.+.+.++.... +... .....+......|++|++++|||+|+++++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~P~~~le~ 315 (339)
T d1n7ha_ 236 EAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEK 315 (339)
T ss_dssp HHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHH
T ss_pred HHHHHHHhcCCCCccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCCcCCCHHH
Confidence 99999999998888999999999999999999999987643 2222 2223444556779999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 013226 410 GLPLMVADFRHRI 422 (447)
Q Consensus 410 ~l~~~~~~~~~~~ 422 (447)
+|++|++|+.+..
T Consensus 316 gi~~ti~~~~~~~ 328 (339)
T d1n7ha_ 316 LVKMMVDEDLELA 328 (339)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999997653
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=7.7e-38 Score=303.87 Aligned_cols=304 Identities=27% Similarity=0.417 Sum_probs=241.0
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc-cccccccCCCceEEEeccccccc-----c--cCCCEEEEecc
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK-DNLIHHFGNPRFELIRHDVVEPI-----L--LEVDQIYHLAC 188 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~-----~--~~~d~Vih~Ag 188 (447)
+||||||+||||++|+++|+++|++|+++++...... ..+.......+++++.+|+.+.. + .++|+|||+|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa 81 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG 81 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence 6999999999999999999999999999986433222 22222223467899999998753 2 24799999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCcc-ccCCCCCCCCCCC-----------cCCCCCCCCCC
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQAET-----------YWGNVNPIGVR 255 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~-v~g~~~~~~~~e~-----------~~~~~~~~~~~ 255 (447)
.........++...+++|+.||.+|+++|.+.++ ++|++||.. +++.....+..+. .+....+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (338)
T d1orra_ 82 QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFH 161 (338)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCCC
T ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCccccc
Confidence 8765555557888999999999999999999987 666666655 5554333222111 01122455677
Q ss_pred ChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCcc-CCCchHHHHHHHHHh-----CCCeEEecCCCeeEccccH
Q 013226 256 SCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCI-DDGRVVSNFVAQALR-----KEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 256 ~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~v 329 (447)
+.|+.+|...|.++..+.+.+++...++|++++|++.... ....++..++..++. ++++.+++++.+.++|+|+
T Consensus 162 ~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~v 241 (338)
T d1orra_ 162 SPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHA 241 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEH
T ss_pred cccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCceeEeeecc
Confidence 8999999999999999999999999999999999766432 345566777766654 6789999999999999999
Q ss_pred HHHHHHHHHHHcCCC---CCcEEecC--CCccCHHHHHHHHHHHhCCCCcEEecCCCCCCCCcccCChHHHHHHcCCCcc
Q 013226 330 SDLVEGLIRLMEGDH---VGPFNLGN--PGEFTMLELAEVVQEIIDRNARIEFRPNTEDDPHKRKPDITKAKQLLGWEPR 404 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~---~g~~~i~~--~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 404 (447)
+|++++++.++++.. .++|++.. +..+++.|+++.+.+.++.+.++...+....+......|++|++++|||+|+
T Consensus 242 ~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~Lg~~p~ 321 (338)
T d1orra_ 242 EDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPK 321 (338)
T ss_dssp HHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCC
T ss_pred cchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCCCCCcCeeeECHHHHHHHHCCCcC
Confidence 999999999998642 35888854 4568999999999999999988888777767777778899999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 013226 405 VTLRKGLPLMVADFRH 420 (447)
Q Consensus 405 ~s~~e~l~~~~~~~~~ 420 (447)
++++|+|+++++|++.
T Consensus 322 ~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 322 VSAKDGVQKMYDWTSS 337 (338)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999985
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.1e-38 Score=312.04 Aligned_cols=307 Identities=25% Similarity=0.273 Sum_probs=232.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCC------------Ccccc------ccccCCCceEEEeccccccc
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG------------KKDNL------IHHFGNPRFELIRHDVVEPI 176 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~------------~~~~~------~~~~~~~~v~~~~~D~~~~~ 176 (447)
||+|||||||||||++|+++|+++||+|+++|..... ..... .......+++++.+|+++..
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 7899999999999999999999999999999731100 00000 00112357899999998763
Q ss_pred c-----c--CCCEEEEeccCCCCCCcccC---hHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCCCCCCC
Q 013226 177 L-----L--EVDQIYHLACPASPVHYKFN---PVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 ~-----~--~~d~Vih~Ag~~~~~~~~~~---~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
. . ++|+|||+||.........+ +...+++|+.||.+++++|++.++ ++++.||..+|+.... +..|.
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~~~ 159 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEG 159 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBCSS
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccc-ccccc
Confidence 2 2 57999999987543333223 446789999999999999999886 5777777778875432 22222
Q ss_pred cCC---------CCCCCCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccC---------------CCch
Q 013226 245 YWG---------NVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCID---------------DGRV 300 (447)
Q Consensus 245 ~~~---------~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~---------------~~~~ 300 (447)
++. ...+..|.+.|+.+|..+|.+++.+.++++++++++||+++|||+.... ...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 210 1135567789999999999999999999999999999999999975321 1346
Q ss_pred HHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC-CcEEe--cCCCccCHHHHHHHHHHHhC---CCCc
Q 013226 301 VSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV-GPFNL--GNPGEFTMLELAEVVQEIID---RNAR 374 (447)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~-g~~~i--~~~~~~s~~el~~~i~~~~g---~~~~ 374 (447)
+..++.+...++++.++|++.+.++|+||+|++++++.++++... |.+++ .+++.+++.|+++.+.+..+ .+..
T Consensus 240 i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~~~ 319 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVK 319 (393)
T ss_dssp HHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCCCC
T ss_pred hhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhhCCCcc
Confidence 788999999999999999999999999999999999999987644 55555 45578999999999988763 3444
Q ss_pred EEecC--CCCCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHHHHhc
Q 013226 375 IEFRP--NTEDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFRHRIF 423 (447)
Q Consensus 375 ~~~~~--~~~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~~~~~ 423 (447)
....+ ....+......|++|+++ |||+|+++++++++++++|+++...
T Consensus 320 ~~~~~~~~~~~~~~~~~~d~~k~~~-LGw~P~~~~~~~i~~~~~~~~~~k~ 369 (393)
T d1i24a_ 320 KMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYLSDSLLDSLLNFAVQFKD 369 (393)
T ss_dssp EEEECCSSCSCSSCCCCBCCCHHHH-TTCCCCCCCHHHHHHHHHHHHHTGG
T ss_pred eeeccCCCCCCCccEecCCHHHHHH-cCCccccCHHHHHHHHHHHHHHHHH
Confidence 43332 233445556778999985 9999999999999999999887643
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=9.4e-36 Score=291.72 Aligned_cols=305 Identities=21% Similarity=0.259 Sum_probs=232.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccc-------cCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL-------LEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------~~~d~Vih 185 (447)
.++|+|||||||||||++|++.|+++|++|++++|.................++++.+|+.+... ..+|+|+|
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~ 85 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH 85 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhh
Confidence 47899999999999999999999999999999999765544332222223478999999987642 25899999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-e-EEEEeCccccCCCC-CCCCCCCcCCCCCCCCCCChHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-R-FLLTSTSEVYGDPL-QHPQAETYWGNVNPIGVRSCYDEGK 262 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r-~v~~SS~~v~g~~~-~~~~~e~~~~~~~~~~~~~~Y~~sK 262 (447)
+|+.........++...+++|+.|+.++++++++.+. + +++.||..++.... ..+..|+ .+..|.+.|+.+|
T Consensus 86 ~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~p~~~y~~~k 160 (356)
T d1rkxa_ 86 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYSNSK 160 (356)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHHHHH
T ss_pred hhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccc-----cccCCCCcccccc
Confidence 9997655555567888999999999999999998775 4 55555444444333 3344444 5666778999999
Q ss_pred HHHHHHHHHHHh---------hhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHH
Q 013226 263 RTAETLTMDYHR---------GLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 333 (447)
Q Consensus 263 ~~~E~~~~~~~~---------~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 333 (447)
...|..+..++. ..++.++++||+++|||++. ....++..++.....+. ...++.+.+.++++|++|++
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~-~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~v~D~~ 238 (356)
T d1rkxa_ 161 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDW-ALDRIVPDILRAFEQSQ-PVIIRNPHAIRPWQHVLEPL 238 (356)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCC-CSSCHHHHHHHHHHTTC-CEECSCTTCEECCEETHHHH
T ss_pred ccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcc-hhhHHHHHHHHHHhCCC-ceEEeecccccccccccccc
Confidence 999999988765 34788999999999999853 23456677776665554 44578888999999999999
Q ss_pred HHHHHHHcCCC------CCcEEe--cCCCccCHHHHHHHHHHHhCCCCcEEecC-CCCCCCCcccCChHHHHHHcCCCcc
Q 013226 334 EGLIRLMEGDH------VGPFNL--GNPGEFTMLELAEVVQEIIDRNARIEFRP-NTEDDPHKRKPDITKAKQLLGWEPR 404 (447)
Q Consensus 334 ~ai~~~l~~~~------~g~~~i--~~~~~~s~~el~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~~p~ 404 (447)
.+++.++.+.. ....+. .....+++.++++.+.+.++....+.... ....+.....+|++|++++|||+|+
T Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P~ 318 (356)
T d1rkxa_ 239 SGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPR 318 (356)
T ss_dssp HHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCC
T ss_pred chhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHHHHCCCcC
Confidence 99998887532 123333 34457899999999999999887765432 2234455667899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcC
Q 013226 405 VTLRKGLPLMVADFRHRIFG 424 (447)
Q Consensus 405 ~s~~e~l~~~~~~~~~~~~~ 424 (447)
++++|+|+++++||+.....
T Consensus 319 ~~l~egi~~ti~wyk~~~~~ 338 (356)
T d1rkxa_ 319 WNLNTTLEYIVGWHKNWLSG 338 (356)
T ss_dssp CCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcC
Confidence 99999999999999976543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=4.9e-36 Score=283.75 Aligned_cols=272 Identities=18% Similarity=0.222 Sum_probs=228.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccccc--CCCEEEEeccCCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL--EVDQIYHLACPASPV 193 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~Ag~~~~~ 193 (447)
|+|||||||||||++|+++|.++|++|++++|.. +++.+.+..++.+. ++|+|||+|+.....
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~---------------~D~~d~~~~~~~l~~~~~d~vih~a~~~~~~ 66 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------LDITNVLAVNKFFNEKKPNVVINCAAHTAVD 66 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh---------------ccCCCHHHHHHHHHHcCCCEEEeeccccccc
Confidence 7899999999999999999999999999998742 11111222223332 589999999976655
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 013226 194 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 273 (447)
Q Consensus 194 ~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~ 273 (447)
.....+......|+..+.++.+.++..+..++++||..+|+.....+.+|+ .+..+...|+.+|...|.++++
T Consensus 67 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ss~~v~~~~~~~~~~e~-----~~~~~~~~~~~~k~~~e~~~~~-- 139 (281)
T d1vl0a_ 67 KCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAYGKTKLEGENFVKA-- 139 (281)
T ss_dssp HHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHHHHHHHHHHHHHHH--
T ss_pred cccccchhhcccccccccccccccccccccccccccceeeecccccccccc-----ccccchhhhhhhhhHHHHHHHH--
Confidence 555667788899999999999999988889999999999998888888888 5667789999999999988755
Q ss_pred hhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEecCC
Q 013226 274 RGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNP 353 (447)
Q Consensus 274 ~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~~~ 353 (447)
.+.+.+++||+++|||+. ++...++..+..+..+.++++ ..++++|++|+++++..++++...|+||++++
T Consensus 140 --~~~~~~i~R~~~vyG~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~~~~~~~~~~~~~~g~~~~~~~ 210 (281)
T d1vl0a_ 140 --LNPKYYIVRTAWLYGDGN-----NFVKTMINLGKTHDELKVVHD--QVGTPTSTVDLARVVLKVIDEKNYGTFHCTCK 210 (281)
T ss_dssp --HCSSEEEEEECSEESSSS-----CHHHHHHHHHHHCSEEEEESS--CEECCEEHHHHHHHHHHHHHHTCCEEEECCCB
T ss_pred --hCCCccccceeEEeCCCc-----ccccchhhhhccCCceeecCC--ceeccchhhhhhhhhhhhhhhcccCceeEeCC
Confidence 578999999999999973 567888888888888887764 78999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHhCCCCcEEecCCCCC-----CCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHHH
Q 013226 354 GEFTMLELAEVVQEIIDRNARIEFRPNTED-----DPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADFR 419 (447)
Q Consensus 354 ~~~s~~el~~~i~~~~g~~~~~~~~~~~~~-----~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~~ 419 (447)
+.+|+.|+++.+.+.+|.+..+...+.... .+....+|++|++++|||+|. +|+|+|++++++++
T Consensus 211 ~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~-~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 211 GICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 280 (281)
T ss_dssp SCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Confidence 999999999999999999988765543221 233456899999999999999 99999999999885
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=1.5e-34 Score=282.18 Aligned_cols=297 Identities=18% Similarity=0.189 Sum_probs=215.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc----ccCCCceEEEecccccc-----cccCCCEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH----HFGNPRFELIRHDVVEP-----ILLEVDQI 183 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~----~~~~~~v~~~~~D~~~~-----~~~~~d~V 183 (447)
.+||+||||||+||||++|+++|+++|++|+++.|+... ...+.+ .........+..|+.+. ++.++|.|
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v 87 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK-LANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV 87 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH-HHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchh-HHHHHHhhhccccccccEEEeccccchhhhhhhcccchhh
Confidence 468999999999999999999999999999999985322 111111 11122344566777654 56789999
Q ss_pred EEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCC-C-eEEEEeCccccCCCC----CCCCCCCcCC----------
Q 013226 184 YHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYGDPL----QHPQAETYWG---------- 247 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g-~-r~v~~SS~~v~g~~~----~~~~~e~~~~---------- 247 (447)
+|+|+... ...++...++.|+.||.+++++|.+.+ + +|||+||+++++... ....+|+.|.
T Consensus 88 ~~~a~~~~---~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 164 (342)
T d1y1pa1 88 AHIASVVS---FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTL 164 (342)
T ss_dssp EECCCCCS---CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHS
T ss_pred hhhccccc---ccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccccc
Confidence 99998543 345677788999999999999999874 5 999999987543211 2223444331
Q ss_pred -CCCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCCCeEEecCCCee
Q 013226 248 -NVNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 248 -~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
...+..+.+.|+.+|..+|.+++.+.+++ +++++++||+.+|||...+.. ...+..++..++.+...... .+...
T Consensus 165 ~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~ 243 (342)
T d1y1pa1 165 PESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL-ALMPP 243 (342)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH-HTCCS
T ss_pred cccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCccc-CCccc
Confidence 22455566789999999999999998765 577889999999999765433 44677788888887765543 34466
Q ss_pred EccccHHHHHHHHHHHHcCCC-CCcEEecCCCccCHHHHHHHHHHHhCC-CCcEEecCCCCCCCCcccCC---hHHHHHH
Q 013226 324 RSFQFVSDLVEGLIRLMEGDH-VGPFNLGNPGEFTMLELAEVVQEIIDR-NARIEFRPNTEDDPHKRKPD---ITKAKQL 398 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~-~g~~~i~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d---~~k~~~~ 398 (447)
++|+||+|+|++++.+++++. .|.|++++++.+++.|+++.|.+.++. ..+... +.. ......++ +.+..+.
T Consensus 244 ~~~v~v~Dva~~~i~~l~~~~~~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~-~~~--~~~~~~~~~~~s~~~~k~ 320 (342)
T d1y1pa1 244 QYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADF-PDQ--GQDLSKFDTAPSLEILKS 320 (342)
T ss_dssp EEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCC-CCC--CCCCCEECCHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHhhcCccccceEEEEcCCceEHHHHHHHHHHHcCCCcCCccC-Ccc--CcccccccchHHHHHHHH
Confidence 899999999999999998865 468999999999999999999998742 222211 111 11111122 2344445
Q ss_pred cCCCccCCHHHHHHHHHHH
Q 013226 399 LGWEPRVTLRKGLPLMVAD 417 (447)
Q Consensus 399 lG~~p~~s~~e~l~~~~~~ 417 (447)
|||.+.++++|+|+++++.
T Consensus 321 lg~~~~~~lee~i~d~I~s 339 (342)
T d1y1pa1 321 LGRPGWRSIEESIKDLVGS 339 (342)
T ss_dssp TTCCSCCCHHHHHHHHHCC
T ss_pred cCCCCCcCHHHHHHHHHHh
Confidence 9999999999999999863
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-34 Score=275.96 Aligned_cols=291 Identities=22% Similarity=0.272 Sum_probs=209.2
Q ss_pred EEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEec-cccc-----ccccCCCEEEEeccCC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRH-DVVE-----PILLEVDQIYHLACPA 190 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~-D~~~-----~~~~~~d~Vih~Ag~~ 190 (447)
||||||+||||++|+++|+++|+ +|+++++....... .........++.+. |..+ .....++.|+|+|+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~ 79 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF--VNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS 79 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG--HHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchh--hcccccchhhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence 89999999999999999999996 79998754332211 11112222333332 2222 2345689999999854
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHH
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTM 270 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 270 (447)
. ....+.......|+.++.+++++++..++++++.||..+++.+......++ .+..+.+.|+.+|..+|.++.
T Consensus 80 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~-----~~~~~~~~Y~~~K~~~e~~~~ 152 (307)
T d1eq2a_ 80 S--TTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVYGYSKFLFDEYVR 152 (307)
T ss_dssp C--TTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHHHHHHHHHHHHHH
T ss_pred c--ccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccchhhhhcc
Confidence 3 334466778899999999999999999999999999998877666555555 455667899999999999999
Q ss_pred HHHhhhCCcEEEEeeccccCCCCccC--CCchHHHHHHHHHhCCCeE-EecCCCeeEccccHHHHHHHHHHHHcCCCCCc
Q 013226 271 DYHRGLGIEARIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLT-VYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP 347 (447)
Q Consensus 271 ~~~~~~~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~ 347 (447)
.+.++++++++++||+++|||+.... ...++..+...+..++... .++++...++|+|++|++.++..+++++..+.
T Consensus 153 ~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~~~~ 232 (307)
T d1eq2a_ 153 QILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGI 232 (307)
T ss_dssp HHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCCCEE
T ss_pred ccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhccccc
Confidence 99999999999999999999987533 2345666776777665544 35777788999999999999999999988899
Q ss_pred EEecCCCccCHHHHHHHHHHHhCCCCcEEecCCC----CCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHHH
Q 013226 348 FNLGNPGEFTMLELAEVVQEIIDRNARIEFRPNT----EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVADF 418 (447)
Q Consensus 348 ~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~----~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~~ 418 (447)
||+++++.++++|+++.+.+..+. ..+.+.|.+ .........|++|+++++||+|.++++|+|+++++|+
T Consensus 233 ~~~~~~~~~si~~i~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 233 FNLGTGRAESFQAVADATLAYHKK-GQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp EEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHHTTCCCCCCCHHHHHHHHHHHT
T ss_pred cccccccchhHHHHHHHHHHhcCC-CCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 999999999999999999887643 333333322 1223334569999999999999999999999999985
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.97 E-value=6.9e-31 Score=249.73 Aligned_cols=278 Identities=18% Similarity=0.150 Sum_probs=207.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccccc--CCCEEEEeccCCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILL--EVDQIYHLACPASPV 193 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~Vih~Ag~~~~~ 193 (447)
|+|||||||||||++|+++|.++|+ +++++++.... ..++.+.+..+..+. ++|+|||+||.....
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~~-----------~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~~ 68 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEF-----------CGDFSNPKGVAETVRKLRPDVIVNAAAHTAVD 68 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSSS-----------CCCTTCHHHHHHHHHHHCCSEEEECCCCCCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCccc-----------cCcCCCHHHHHHHHHHcCCCEEEEeccccccc
Confidence 7899999999999999999999986 44555532211 111111222222332 579999999987665
Q ss_pred CcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 013226 194 HYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYH 273 (447)
Q Consensus 194 ~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~ 273 (447)
....++...+..|+.++.++++++++.+++++++||..+|+.....+++|+ .+..|.+.|+.+|..+|.++...
T Consensus 69 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~~~~~~~~~~E~-----~~~~p~~~y~~~k~~~e~~~~~~- 142 (298)
T d1n2sa_ 69 KAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVYGKTKLAGEKALQDN- 142 (298)
T ss_dssp HHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHHHHHHHHHHHHHHHH-
T ss_pred ccccCccccccccccccccchhhhhccccccccccccccccCCCCCCCccc-----cccCCCchHhhhhhhhhhhHHhh-
Confidence 666778889999999999999999999999999999999988888888888 56778899999999999987664
Q ss_pred hhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcC-----CCCCcE
Q 013226 274 RGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEG-----DHVGPF 348 (447)
Q Consensus 274 ~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~-----~~~g~~ 348 (447)
.....++|++..|+... ......+...+..+..+...+ ....+++|+.|+++++..+++. ...++|
T Consensus 143 ---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~i~~~~~~~~~~~~~ 213 (298)
T d1n2sa_ 143 ---CPKHLIFRTSWVYAGKG----NNFAKTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAIRVALNKPEVAGLY 213 (298)
T ss_dssp ---CSSEEEEEECSEECSSS----CCHHHHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEE
T ss_pred ---hcccccccccceeeccC----Cccchhhhhhhcccceeeccc--ceeecccccchHHHHHHHHHhhhhccccccccc
Confidence 33566777777654321 234455566666666666654 4678999999999998887752 234799
Q ss_pred EecCCCccCHHHHHHHHHHHhCCC---CcE---EecCCC-----CCCCCcccCChHHHHHHcCCCccCCHHHHHHHHHHH
Q 013226 349 NLGNPGEFTMLELAEVVQEIIDRN---ARI---EFRPNT-----EDDPHKRKPDITKAKQLLGWEPRVTLRKGLPLMVAD 417 (447)
Q Consensus 349 ~i~~~~~~s~~el~~~i~~~~g~~---~~~---~~~~~~-----~~~~~~~~~d~~k~~~~lG~~p~~s~~e~l~~~~~~ 417 (447)
|+++++.+++.|+++.+.+..+.. ..+ ...+.. ...+.+..+|++|+++.|||+|. +|+|+|++++++
T Consensus 214 n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~-~~~~gl~~~i~~ 292 (298)
T d1n2sa_ 214 HLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QWELGVKRMLTE 292 (298)
T ss_dssp ECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BHHHHHHHHHHH
T ss_pred cccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCC-cHHHHHHHHHHH
Confidence 999999999999999998776432 111 111211 11134457899999999999999 999999999998
Q ss_pred HHHH
Q 013226 418 FRHR 421 (447)
Q Consensus 418 ~~~~ 421 (447)
+...
T Consensus 293 ~~~~ 296 (298)
T d1n2sa_ 293 MFTT 296 (298)
T ss_dssp HHSC
T ss_pred HHhh
Confidence 8753
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.7e-25 Score=204.14 Aligned_cols=201 Identities=15% Similarity=0.072 Sum_probs=147.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccccccccCCCceEEEecccc-----cccccCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVV-----EPILLEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~-----~~~~~~~d~Vih 185 (447)
+++|+|||||||||||++|+++|+++|. +|++++|++........ ..+.....|.. ..++.++|+|||
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~-----~~i~~~~~D~~~~~~~~~~~~~~d~vi~ 86 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAY-----KNVNQEVVDFEKLDDYASAFQGHDVGFC 86 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGG-----GGCEEEECCGGGGGGGGGGGSSCSEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccccc-----ceeeeeeecccccccccccccccccccc
Confidence 5778999999999999999999999995 89999997544333221 24555555553 345678999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHH
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRT 264 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~ 264 (447)
++|.. ....+..+..++|+.++.+++++|++.++ +||++||..++.. +.+.|+.+|..
T Consensus 87 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~------------------~~~~Y~~~K~~ 145 (232)
T d2bkaa1 87 CLGTT---RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQVKGE 145 (232)
T ss_dssp CCCCC---HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHH
T ss_pred ccccc---ccccchhhhhhhcccccceeeecccccCccccccCCccccccC------------------ccchhHHHHHH
Confidence 99843 22234566789999999999999999998 8999999887543 12679999999
Q ss_pred HHHHHHHHHhhhCCc-EEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 265 AETLTMDYHRGLGIE-ARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 265 ~E~~~~~~~~~~~i~-~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
+|..+.+ .+++ ++|+||+.+||++.. .++...++...+...+ ........|+++|+|++++.++.++
T Consensus 146 ~E~~l~~----~~~~~~~IlRP~~i~G~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~I~~~dvA~a~i~~~~~~ 213 (232)
T d2bkaa1 146 VEAKVEE----LKFDRYSVFRPGVLLCDRQE---SRPGEWLVRKFFGSLP-----DSWASGHSVPVVTVVRAMLNNVVRP 213 (232)
T ss_dssp HHHHHHT----TCCSEEEEEECCEEECTTGG---GSHHHHHHHHHHCSCC-----TTGGGGTEEEHHHHHHHHHHHHTSC
T ss_pred hhhcccc----ccccceEEecCceeecCCCc---CcHHHHHHHHHhhccC-----CcccCCCeEEHHHHHHHHHHHHhcC
Confidence 9987755 4664 899999999998743 2333444444444321 2223345799999999999988877
Q ss_pred CCC-cEEec
Q 013226 344 HVG-PFNLG 351 (447)
Q Consensus 344 ~~g-~~~i~ 351 (447)
..+ .+.+.
T Consensus 214 ~~~~~~i~~ 222 (232)
T d2bkaa1 214 RDKQMELLE 222 (232)
T ss_dssp CCSSEEEEE
T ss_pred ccCCeEEEc
Confidence 654 45443
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.92 E-value=7.7e-26 Score=215.76 Aligned_cols=235 Identities=14% Similarity=0.145 Sum_probs=170.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---cccccCCCceEEEecccccc-----cccCCCEEEEe
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHL 186 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 186 (447)
.++|||||||||||++|+++|+++|++|++++|........ ........+++++.+|+.+. .+.+++.+||+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~ 82 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 82 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence 45699999999999999999999999999999965433211 11122345788999998765 45689999999
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHH
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTA 265 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~ 265 (447)
++.... ..|..++.+++++|++.+. ++++.||.+++..... .+..+...|...|..+
T Consensus 83 ~~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~~-----------~~~~~~~~~~~~~~~~ 140 (312)
T d1qyda_ 83 LAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIME-----------HALQPGSITFIDKRKV 140 (312)
T ss_dssp CCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCC-----------CCCSSTTHHHHHHHHH
T ss_pred hhhccc-----------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCcc-----------cccchhhhhhHHHHHH
Confidence 874321 1466677788999988876 8999998765543221 2333445666666665
Q ss_pred HHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC
Q 013226 266 ETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 266 E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~ 345 (447)
+. +....+++++++||+.+||+....... .+......++.+.++++++..++|+|++|+|++++.+++++..
T Consensus 141 ~~----~~~~~~~~~~i~r~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 212 (312)
T d1qyda_ 141 RR----AIEAASIPYTYVSSNMFAGYFAGSLAQ----LDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT 212 (312)
T ss_dssp HH----HHHHTTCCBCEEECCEEHHHHTTTSSC----TTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG
T ss_pred HH----hhcccccceEEeccceeecCCccchhh----HHHHhhhcccccccccccccccceeeHHHHHHHHHHHhcCccc
Confidence 55 445579999999999999975321111 1111122455677788999999999999999999999988643
Q ss_pred --Cc-EEecCCCccCHHHHHHHHHHHhCCCCcEEecC
Q 013226 346 --GP-FNLGNPGEFTMLELAEVVQEIIDRNARIEFRP 379 (447)
Q Consensus 346 --g~-~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 379 (447)
+. |++++++.+|++|+++.+.+.+|.+.++...+
T Consensus 213 ~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~ 249 (312)
T d1qyda_ 213 LNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249 (312)
T ss_dssp SSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred cCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence 44 55666678999999999999999887765544
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.92 E-value=1.1e-25 Score=213.31 Aligned_cols=230 Identities=16% Similarity=0.203 Sum_probs=165.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccc----ccccCCCceEEEeccccccc-----ccCCCEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNL----IHHFGNPRFELIRHDVVEPI-----LLEVDQIY 184 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~----~~~~~~~~v~~~~~D~~~~~-----~~~~d~Vi 184 (447)
+.|+|||||||||||++++++|+++|++|++++|......... ........++++.+|+.+.. +.+++.||
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi 81 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI 81 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeee
Confidence 4578999999999999999999999999999999755432211 11123456888999987663 46799999
Q ss_pred EeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHH
Q 013226 185 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKR 263 (447)
Q Consensus 185 h~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~ 263 (447)
|+++. .+..++.+++++++..++ ++++.||....... . ....+...|...+.
T Consensus 82 ~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~~-------~-----~~~~~~~~~~~~~~ 134 (307)
T d1qyca_ 82 STVGS---------------LQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDN-------V-----HAVEPAKSVFEVKA 134 (307)
T ss_dssp ECCCG---------------GGSGGGHHHHHHHHHHCCCSEEECSCCSSCTTS-------C-----CCCTTHHHHHHHHH
T ss_pred ecccc---------------cccchhhHHHHHHHHhccccceeeecccccccc-------c-----cccccccccccccc
Confidence 99863 244455678888888887 78887775433211 1 11111133444444
Q ss_pred HHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 264 TAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 264 ~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
..+ .+..+.+++++++||+++||+.... +..+.....++.....++++++.++|+|++|+|++++.+++++
T Consensus 135 ~~~----~~~~~~~~~~~i~r~~~v~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~ 205 (307)
T d1qyca_ 135 KVR----RAIEAEGIPYTYVSSNCFAGYFLRS-----LAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDP 205 (307)
T ss_dssp HHH----HHHHHHTCCBEEEECCEEHHHHTTT-----TTCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCG
T ss_pred ccc----chhhccCCCceecccceecCCCccc-----hhhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhcCh
Confidence 444 4445579999999999999976421 1223333455666778888999999999999999999999876
Q ss_pred CC--C-cEEecCCCccCHHHHHHHHHHHhCCCCcEEecC
Q 013226 344 HV--G-PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRP 379 (447)
Q Consensus 344 ~~--g-~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 379 (447)
.. + .|++++++.+|+.|+++.+.+.+|.+..+...|
T Consensus 206 ~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~ 244 (307)
T d1qyca_ 206 RTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244 (307)
T ss_dssp GGTTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred hhcCceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECC
Confidence 43 3 455677789999999999999999987766544
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.9e-23 Score=187.85 Aligned_cols=194 Identities=14% Similarity=0.128 Sum_probs=147.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEec
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHLA 187 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~A 187 (447)
+.+|+|+||||||+||++++++|+++|++|++++|+..+.... ...+++++.+|+.+. ++.++|+|||++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~-----~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~ 75 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-----GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-----SCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc-----cccccccccccccchhhHHHHhcCCCEEEEEe
Confidence 3678999999999999999999999999999999975543322 235688999998765 467899999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAE 266 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E 266 (447)
|...... ..+++..++.+++++++++++ |||++||..+++++... ......|...|..+|
T Consensus 76 g~~~~~~-------~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~------------~~~~~~~~~~~~~~e 136 (205)
T d1hdoa_ 76 GTRNDLS-------PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV------------PPRLQAVTDDHIRMH 136 (205)
T ss_dssp CCTTCCS-------CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS------------CGGGHHHHHHHHHHH
T ss_pred ccCCchh-------hhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCccc------------cccccccchHHHHHH
Confidence 8643221 123778899999999999998 99999999987654321 112256888898888
Q ss_pred HHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCC-
Q 013226 267 TLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHV- 345 (447)
Q Consensus 267 ~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~- 345 (447)
++++ +.+++++++||+.+++... .....++.++.....+|+++|+|++++.+++++..
T Consensus 137 ~~l~----~~~~~~tiirp~~~~~~~~-----------------~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~~ 195 (205)
T d1hdoa_ 137 KVLR----ESGLKYVAVMPPHIGDQPL-----------------TGAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYD 195 (205)
T ss_dssp HHHH----HTCSEEEEECCSEEECCCC-----------------CSCCEEESSSCSSCSEEEHHHHHHHHHHTTSCSTTT
T ss_pred HHHH----hcCCceEEEecceecCCCC-----------------cccEEEeeCCCCCCCcCCHHHHHHHHHHHhCCCCCC
Confidence 7764 4699999999999886432 12233444556667899999999999999988753
Q ss_pred C-cEEec
Q 013226 346 G-PFNLG 351 (447)
Q Consensus 346 g-~~~i~ 351 (447)
| .+.+.
T Consensus 196 g~~~~~s 202 (205)
T d1hdoa_ 196 GHSTYPS 202 (205)
T ss_dssp TCEEEEE
T ss_pred CEEEecC
Confidence 3 44443
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=5.3e-24 Score=192.52 Aligned_cols=193 Identities=20% Similarity=0.198 Sum_probs=136.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccccccccCCCceEEEeccc---ccccccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDV---VEPILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~~~d~Vih~Ag~ 189 (447)
.|+|||||||||||++|+++|+++|+ +|+++.|+..... ..++....|+ .+.....+|.||||+|.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~---------~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~ 72 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH---------PRLDNPVGPLAELLPQLDGSIDTAFCCLGT 72 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC---------TTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc---------ccccccccchhhhhhccccchheeeeeeee
Confidence 47999999999999999999999998 5666666432211 1233333332 33334568999999985
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHH
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETL 268 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~ 268 (447)
.. ..........++|+.++.+++++|++.++ +|+++||..+++. +.+.|..+|..+|..
T Consensus 73 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~------------------~~~~y~~~K~~~E~~ 132 (212)
T d2a35a1 73 TI--KEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELEQA 132 (212)
T ss_dssp CH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHHHH
T ss_pred ec--cccccccccccchhhhhhhcccccccccccccccccccccccc------------------cccchhHHHHHHhhh
Confidence 42 22234567889999999999999999998 9999999887643 126799999999987
Q ss_pred HHHHHhhhCC-cEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCCCCCc
Q 013226 269 TMDYHRGLGI-EARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGP 347 (447)
Q Consensus 269 ~~~~~~~~~i-~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~ 347 (447)
+.+ .++ +++|+||+.||||.... ++.. .+...-.... . ..+++||++|+|++++.+++++..|.
T Consensus 133 l~~----~~~~~~~I~Rp~~v~G~~~~~---~~~~-----~~~~~~~~~~-~--~~~~~i~v~DvA~ai~~~~~~~~~g~ 197 (212)
T d2a35a1 133 LQE----QGWPQLTIARPSLLFGPREEF---RLAE-----ILAAPIARIL-P--GKYHGIEACDLARALWRLALEEGKGV 197 (212)
T ss_dssp HTT----SCCSEEEEEECCSEESTTSCE---EGGG-----GTTCCCC-------CHHHHHHHHHHHHHHHHHHTCCCSEE
T ss_pred ccc----cccccceeeCCcceeCCcccc---cHHH-----HHHHHHhhcc-C--CCCcEEEHHHHHHHHHHHHcCCCCCC
Confidence 754 455 59999999999997532 1111 1111111111 1 22467999999999999999988887
Q ss_pred EEec
Q 013226 348 FNLG 351 (447)
Q Consensus 348 ~~i~ 351 (447)
+++.
T Consensus 198 ~~~~ 201 (212)
T d2a35a1 198 RFVE 201 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=3.7e-20 Score=170.21 Aligned_cols=209 Identities=16% Similarity=0.119 Sum_probs=151.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
++++|+++||||+++||++++++|+++|++|++++|+.+.. .+.....+...+.+|+.++. +.+
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l----~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 77 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPL----REAAEAVGAHPVVMDVADPASVERGFAEALAHLGR 77 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999999864322 22222335778899997763 246
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|++|||||......+.+ +....+++|+.++..+.+++.+ .+. +++++||....+.+
T Consensus 78 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~~~-------------- 143 (242)
T d1ulsa_ 78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGNL-------------- 143 (242)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCCT--------------
T ss_pred ceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccCCC--------------
Confidence 999999999876554433 2456899999999998887644 334 67777776543321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
....|+.+|++.+.+.+.++.++ ||++..|.||.|-.|.... .............++. -+.
T Consensus 144 ---~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~----~~~~~~~~~~~~~pl~---------R~~ 207 (242)
T d1ulsa_ 144 ---GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK----VPEKVREKAIAATPLG---------RAG 207 (242)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS----SCHHHHHHHHHTCTTC---------SCB
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhc----CCHHHHHHHHhcCCCC---------CCC
Confidence 23789999999999999998764 8999999999998765322 1233344444443332 255
Q ss_pred cHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 328 FVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
..+|+|+++++++.+.. .| ++.+.+|.
T Consensus 208 ~pedia~~v~fL~S~~s~~itG~~i~vDGG~ 238 (242)
T d1ulsa_ 208 KPLEVAYAALFLLSDESSFITGQVLFVDGGR 238 (242)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhchhhCCCCCcEEEECCCc
Confidence 78999999999997542 45 56665543
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.85 E-value=1.2e-20 Score=183.41 Aligned_cols=230 Identities=12% Similarity=0.070 Sum_probs=161.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc------cccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP------ILLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~A 187 (447)
+.|+|+|||||||||++|+++|+++|++|+++.|+...... .......+++++.+|+.+. ++.++|.++++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~ 79 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINT 79 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeec
Confidence 45789999999999999999999999999999996543221 1112345789999998774 356788888775
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHH
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAE 266 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E 266 (447)
.... ..|+..+.+++++|+++|+ ++|+.||...... ....+...|..+|...+
T Consensus 80 ~~~~------------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~--------------~~~~~~~~~~~~k~~~~ 133 (350)
T d1xgka_ 80 TSQA------------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSL--------------YGPWPAVPMWAPKFTVE 133 (350)
T ss_dssp CSTT------------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGG--------------TSSCCCCTTTHHHHHHH
T ss_pred cccc------------chhhhhhhHHHHHHHHhCCCceEEEeecccccc--------------CCcccchhhhhhHHHHH
Confidence 4211 1467778899999999997 8999998754322 11122356778888777
Q ss_pred HHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCC--CeEEecCCCeeEccccH-HHHHHHHHHHHcCC
Q 013226 267 TLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKE--PLTVYGDGKQTRSFQFV-SDLVEGLIRLMEGD 343 (447)
Q Consensus 267 ~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~v-~D~a~ai~~~l~~~ 343 (447)
.++. +.+++++++||+.+++.........+ ........ ....+.+++...+++++ +|+++++..++.+.
T Consensus 134 ~~~~----~~~~~~~~vr~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~ 205 (350)
T d1xgka_ 134 NYVR----QLGLPSTFVYAGIYNNNFTSLPYPLF----QMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDG 205 (350)
T ss_dssp HHHH----TSSSCEEEEEECEEGGGCBSSSCSSC----BEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHC
T ss_pred HHHH----hhccCceeeeeceeeccccccccccc----cccccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCC
Confidence 6654 46789999999988764322111100 00001111 23344556677788876 79999999998754
Q ss_pred C---CC-cEEecCCCccCHHHHHHHHHHHhCCCCcEEecCC
Q 013226 344 H---VG-PFNLGNPGEFTMLELAEVVQEIIDRNARIEFRPN 380 (447)
Q Consensus 344 ~---~g-~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~ 380 (447)
. .| .|++++ +.+|+.|+++.+.+.+|++..+...|.
T Consensus 206 ~~~~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 206 PQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp HHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred hhhcCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence 2 34 677765 689999999999999999987766654
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.84 E-value=3.2e-20 Score=171.29 Aligned_cols=214 Identities=18% Similarity=0.146 Sum_probs=145.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+++||+++||||+++||+++++.|+++|++|++.+|+.....+..... ...++..+.+|++++. +.+
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 80 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRN-LGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 80 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHH-cCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999998643222222222 2347889999998763 346
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|++|||||+.....+.+ +.+..+++|+.++..+.+++ ++.+. ++|++||.....
T Consensus 81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~---------------- 144 (247)
T d2ew8a1 81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL---------------- 144 (247)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS----------------
T ss_pred CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcc----------------
Confidence 999999999876554433 35568999999998888875 34444 999999987532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
+......|+.||++.+.+++.++.+ +||++.+|.||.|..|.... ......... .... .....-+.
T Consensus 145 ~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~---~~~~~~~~~-~~~~-------~~~l~r~~ 213 (247)
T d2ew8a1 145 KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEA---SALSAMFDV-LPNM-------LQAIPRLQ 213 (247)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----------------------CT-------TSSSCSCC
T ss_pred cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccc---cccchhHHH-HHHH-------hccCCCCC
Confidence 2222378999999999999999875 48999999999987664211 000100000 0000 00111256
Q ss_pred cHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 328 FVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
..+|+|+++++++.+. .+| ++.+.+|
T Consensus 214 ~pedvA~~v~fL~S~~s~~itG~~i~vDGG 243 (247)
T d2ew8a1 214 VPLDLTGAAAFLASDDASFITGQTLAVDGG 243 (247)
T ss_dssp CTHHHHHHHHHHTSGGGTTCCSCEEEESSS
T ss_pred CHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 7799999999998754 245 5555543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.84 E-value=5.5e-22 Score=181.54 Aligned_cols=222 Identities=15% Similarity=0.120 Sum_probs=146.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCe--EEEEecCCCCCccccccccCCCceEEEecccccc-----cccCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDS--VIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP-----ILLEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~--V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~-----~~~~~d~Vih~ 186 (447)
.+++|||||||||||++++++|+++|++ |+.+.|.+... .. ...+++++.+|..+. ++.++|.|||+
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~-~~-----~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~ 75 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK-EK-----IGGEADVFIGDITDADSINPAFQGIDALVIL 75 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHH-HH-----TTCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHH-Hh-----ccCCcEEEEeeeccccccccccccceeeEEE
Confidence 3568999999999999999999999976 45555643211 11 123567788887665 46789999999
Q ss_pred ccCCCCCCc-------------ccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 187 ACPASPVHY-------------KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 187 Ag~~~~~~~-------------~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
|+....... .........+|+.++.+++..+...+. .+.+.|+...+..... ...
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----------~~~ 144 (252)
T d2q46a1 76 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP-----------LNK 144 (252)
T ss_dssp CCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCG-----------GGG
T ss_pred EeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcc-----------ccc
Confidence 986532111 112345778999999999999988877 7888887665432110 011
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDL 332 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 332 (447)
.....|...+...+ .+..+.+++++++||+++|||...... .+.+..... .....+++|++|+
T Consensus 145 ~~~~~~~~~~~~~~----~~~~~~~~~~~ilRp~~v~g~~~~~~~----------~~~~~~~~~---~~~~~~~i~~~Dv 207 (252)
T d2q46a1 145 LGNGNILVWKRKAE----QYLADSGTPYTIIRAGGLLDKEGGVRE----------LLVGKDDEL---LQTDTKTVPRADV 207 (252)
T ss_dssp GGGCCHHHHHHHHH----HHHHHSSSCEEEEEECEEECSCTTSSC----------EEEESTTGG---GGSSCCEEEHHHH
T ss_pred ccccchhhhhhhhh----hhhhcccccceeecceEEECCCcchhh----------hhhccCccc---ccCCCCeEEHHHH
Confidence 11234555554444 344567999999999999999743110 000111111 1223578999999
Q ss_pred HHHHHHHHcCCCC--CcEEecCCC---ccCHHHHHHHHHHHh
Q 013226 333 VEGLIRLMEGDHV--GPFNLGNPG---EFTMLELAEVVQEII 369 (447)
Q Consensus 333 a~ai~~~l~~~~~--g~~~i~~~~---~~s~~el~~~i~~~~ 369 (447)
|++++.+++++.. ++|||+++. ..++.|+.+.+.++.
T Consensus 208 a~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 208 AEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVT 249 (252)
T ss_dssp HHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred HHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence 9999999987653 399998643 356777777665543
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.84 E-value=3.7e-20 Score=169.64 Aligned_cols=204 Identities=17% Similarity=0.115 Sum_probs=144.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
.+++||++|||||+++||++++++|+++|++|++++|+.... .++..+.+|++++. +.
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 72 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP----------KGLFGVEVDVTDSDAVDRAFTAVEEHQG 72 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC----------TTSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh----------cCceEEEEecCCHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999999964322 24566788887763 24
Q ss_pred CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|++|||||........+ +.++.+++|+.++..+.+++ ++.+. ++|++||.....
T Consensus 73 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~--------------- 137 (237)
T d1uzma1 73 PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW--------------- 137 (237)
T ss_dssp SCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------
T ss_pred CceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhcc---------------
Confidence 6999999999866544333 24568999999988777654 44555 999999987431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
+......|+.||++.+.+++.++.+ +||++.+|.||.+..+.... +............++ .-+
T Consensus 138 -~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~----~~~~~~~~~~~~~pl---------~R~ 203 (237)
T d1uzma1 138 -GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA----LDERIQQGALQFIPA---------KRV 203 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH----SCHHHHHHHGGGCTT---------CSC
T ss_pred -CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc----cCHHHHHHHHhcCCC---------CCC
Confidence 1122378999999999999999876 48999999999987653210 011222222222221 125
Q ss_pred ccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 327 QFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
...+|+|+++++++.++ .+| ++.+.+|
T Consensus 204 ~~pedvA~~v~fL~S~~s~~itG~~i~vdGG 234 (237)
T d1uzma1 204 GTPAEVAGVVSFLASEDASYISGAVIPVDGG 234 (237)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 67899999999999754 345 5666544
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.83 E-value=4.1e-20 Score=170.97 Aligned_cols=212 Identities=14% Similarity=0.133 Sum_probs=148.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.++||+++||||+++||++++++|+++|++|++++|+.+...+. .+.+ ..++.++.+|++++. +.+
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~-~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT-AREL-GDAARYQHLDVTIEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHHh-CCceEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999999999999965432221 1122 246888999998763 246
Q ss_pred CCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|++|||||.......... ....+++|+.++..+.+++. +.+. +||++||...+.
T Consensus 80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~---------------- 143 (254)
T d1hdca_ 80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM---------------- 143 (254)
T ss_dssp CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred ccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcc----------------
Confidence 9999999998765544432 44689999999988888763 3444 999999987532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc-
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF- 326 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 326 (447)
+......|+.+|++.+.+.+.++.+ +||++.+|.||.|..|. .........-..... ....-+
T Consensus 144 ~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~------------~~~~~~~~~~~~~~~-~pl~R~g 210 (254)
T d1hdca_ 144 GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM------------TAETGIRQGEGNYPN-TPMGRVG 210 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH------------HHHHTCCCSTTSCTT-STTSSCB
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc------------chhcCHHHHHHHHhC-CCCCCCC
Confidence 1222378999999999999999875 48999999999886531 111111110000000 000112
Q ss_pred ccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 327 QFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
...+|+|+++++++.+. ..| ++.+.+|-
T Consensus 211 ~~PedvA~~v~fL~S~~a~~itG~~i~vDGG~ 242 (254)
T d1hdca_ 211 NEPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242 (254)
T ss_dssp -CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCHHHHHHHHHHHhchhhCCCCCceEEeCCCc
Confidence 35799999999999754 245 66666553
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.7e-20 Score=172.69 Aligned_cols=210 Identities=15% Similarity=0.111 Sum_probs=150.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLEV 180 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~~ 180 (447)
++||+++||||+++||++++++|+++|++|++.+|+.+.. +++...+ ..++..+.+|++++. +.++
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l-~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGA-QAISDYL-GANGKGLMLNVTDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHh-CCCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence 6899999999999999999999999999999999864322 2222222 236778899997763 2469
Q ss_pred CEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 181 DQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 181 d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
|++|||||........+ +....+++|+.++..+.+++ ++.+. +||++||...+. +
T Consensus 80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~----------------~ 143 (243)
T d1q7ba_ 80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM----------------G 143 (243)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH----------------C
T ss_pred ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC----------------C
Confidence 99999999876555443 24568999999998888876 33444 999999987432 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcccc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQF 328 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 328 (447)
......|+.||++.+.+++.++.+ +|+++.+|.||.+-.+... .+............++ .-+..
T Consensus 144 ~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~----~~~~~~~~~~~~~~pl---------~R~~~ 210 (243)
T d1q7ba_ 144 NGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTR----ALSDDQRAGILAQVPA---------GRLGG 210 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH----TSCHHHHHHHHTTCTT---------SSCBC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhh----hhhhhHHHHHHhcCCC---------CCCCC
Confidence 112378999999999999999876 4899999999988654311 1112222333333222 12567
Q ss_pred HHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 329 VSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 329 v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
.+|+|+++++++.+. .+| ++.+.+|
T Consensus 211 pedvA~~v~fL~S~~s~~itGq~i~vdGG 239 (243)
T d1q7ba_ 211 AQEIANAVAFLASDEAAYITGETLHVNGG 239 (243)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHHhCchhcCCcCCeEEECCC
Confidence 899999999999754 245 6666554
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=2.7e-20 Score=171.79 Aligned_cols=214 Identities=15% Similarity=0.100 Sum_probs=148.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.++||++|||||+++||+++++.|+++|++|++.+|+.+. .+..+. .+..++.+|++++. +.+
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~--~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 76 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG--KEVAEA---IGGAFFQVDLEDERERVRFVEEAAYALGR 76 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH--HHHHHH---HTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHH---cCCeEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 3689999999999999999999999999999999986432 122222 24567889998763 246
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|++|||||...+....+ +.+..+++|+.|+.++.+++. +.+. +||++||...+.
T Consensus 77 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~---------------- 140 (248)
T d2d1ya1 77 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF---------------- 140 (248)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------
T ss_pred CCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccc----------------
Confidence 999999999876554443 245689999999998888764 3444 999999987532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCcc--CCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.+|++.+.+++.++.+ +||++.+|.||.+-.|.... ........+........+ ..-
T Consensus 141 ~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p---------l~R 211 (248)
T d2d1ya1 141 AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHA---------LRR 211 (248)
T ss_dssp BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTST---------TSS
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCC---------CCC
Confidence 2223478999999999999999876 48999999999886542100 000000011111111111 112
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
+...+|+|+++++++.+. ..| .+.+.+|-.
T Consensus 212 ~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~t 245 (248)
T d2d1ya1 212 LGKPEEVAEAVLFLASEKASFITGAILPVDGGMT 245 (248)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHhCchhcCCCCcEEEcCcCcc
Confidence 567899999999998654 345 677765543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=6.7e-20 Score=168.50 Aligned_cols=206 Identities=15% Similarity=0.097 Sum_probs=149.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.++||+++||||+++||+++++.|+++|++|++.+|+.+..+ .+...+ ..++.++.+|++++. +.+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGK-AMAAEL-ADAARYVHLDVTQPAQWKAAVDTAVTAFGG 80 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHT-GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHh-hCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999999999999999643322 222222 236788899998763 246
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
+|++|||||......+.+ +..+.+++|+.++..+++++ ++.+. ++|++||...+.
T Consensus 81 idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~---------------- 144 (244)
T d1nffa_ 81 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA---------------- 144 (244)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred CeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccc----------------
Confidence 999999999876554443 25568999999998888765 33344 999999987532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
+......|+.+|+..+.+++.++.+ +||++..|.||.|..|...... ..... ....-+.
T Consensus 145 ~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~-------------~~~~~-----~pl~R~~ 206 (244)
T d1nffa_ 145 GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVP-------------EDIFQ-----TALGRAA 206 (244)
T ss_dssp CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSC-------------TTCSC-----CSSSSCB
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhh-------------HHHHh-----ccccCCC
Confidence 2222378999999999999999876 4899999999998776421110 00000 0112367
Q ss_pred cHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 328 FVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
..+|+|+++++++.+. ..| ++.+.+|
T Consensus 207 ~p~diA~~v~fL~s~~s~~itG~~i~vDGG 236 (244)
T d1nffa_ 207 EPVEVSNLVVYLASDESSYSTGAEFVVDGG 236 (244)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhChhhCCCcCCEEEECCC
Confidence 8999999999999654 345 5666554
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.83 E-value=3.9e-20 Score=172.17 Aligned_cols=217 Identities=13% Similarity=0.066 Sum_probs=146.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEEEeccccccc------------c
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D~~~~~------------~ 177 (447)
++||++|||||+++||++++++|+++|++|++.+|+.....+.+...+ ...++.++.+|++++. +
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999986433222222211 2347888999998763 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|++|||||......+.+ +....+++|+.++..+++++ ++.+. ++|++||.....
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~-------------- 147 (260)
T d1x1ta1 82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV-------------- 147 (260)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee--------------
Confidence 46999999999876655443 24568999999988877765 44454 999999987532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeE-------Eec
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT-------VYG 318 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 318 (447)
+......|+.+|++.+.+++.++.+ +||++..|.||.|-.|... ..+.......... .+.
T Consensus 148 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 217 (260)
T d1x1ta1 148 --ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVE--------KQISALAEKNGVDQETAARELLS 217 (260)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC--------------------------------CHH
T ss_pred --ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhh--------hhhhhhhhhcCCChHHHHHHHHH
Confidence 1222378999999999999999876 4899999999998765321 1111110000000 000
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
......-+...+|+|+++++++.+. ..| ++.+.+|
T Consensus 218 ~~~Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG 256 (260)
T d1x1ta1 218 EKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp HHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred hcCCCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcc
Confidence 0000112568899999999999754 335 5555543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.83 E-value=5e-20 Score=171.24 Aligned_cols=216 Identities=14% Similarity=0.068 Sum_probs=152.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.++||+++||||+++||++++++|+++|++|++.+|+.+...+.+.+.+ ...++..+.+|++++. +
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999999996443222222221 2346788999998763 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC--eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA--RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~--r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|++|||||...+....+ +....+++|+.++..+.+++ ++.+. .||++||.+...
T Consensus 84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~------------- 150 (261)
T d1geea_ 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------- 150 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-------------
T ss_pred CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc-------------
Confidence 46999999999876554433 24568999999988887765 34443 588999987431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchH-HHHHHHHHhCCCeEEecCCCee
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVV-SNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
+......|+.+|++.+.+++.++.++ ||++.+|.||.|..|.... .+. ...........++.
T Consensus 151 ---~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~---~~~~~~~~~~~~~~~pl~-------- 216 (261)
T d1geea_ 151 ---PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAE---KFADPEQRADVESMIPMG-------- 216 (261)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHH---HHHSHHHHHHHHTTCTTS--------
T ss_pred ---cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhh---hcCCHHHHHHHHhcCCCC--------
Confidence 22223789999999999999998754 8999999999998664210 000 11222223222221
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
-+...+|+|+++++++.+. .+| ++.+.+|..
T Consensus 217 -R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s 251 (261)
T d1geea_ 217 -YIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_dssp -SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred -CCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCee
Confidence 2567899999999999754 245 666666543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.83 E-value=2.3e-20 Score=173.18 Aligned_cols=214 Identities=17% Similarity=0.110 Sum_probs=150.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.++||+++||||+++||+++++.|+++|++|++.+|+.+...+ +...+ ..++..+.+|++++. +.+
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~-~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 79 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARA-TAAEI-GPAACAIALDVTDQASIDRCVAELLDRWGS 79 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHH-HHHHH-CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHh-CCceEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999999999999986443222 22222 346788999998773 246
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HC-C-CeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RV-G-ARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~-g-~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+|++|||||......... +....+++|+.|+..+++++. +. . .+||++||...+-
T Consensus 80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------------- 144 (256)
T d1k2wa_ 80 IDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR--------------- 144 (256)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS---------------
T ss_pred ccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc---------------
Confidence 999999999876544433 245689999999988887642 22 2 3999999987431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHH-----------HHHHHHhCCCeE
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSN-----------FVAQALRKEPLT 315 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~-----------~~~~~~~~~~~~ 315 (447)
+......|+.+|++.+.+++.++.+ +||++.+|.||.+-.|... ..... ........-|+
T Consensus 145 -~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Pl- 218 (256)
T d1k2wa_ 145 -GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWD----GVDAKFADYENLPRGEKKRQVGAAVPF- 218 (256)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHH----HHHHHHHHHHTCCTTHHHHHHHHHSTT-
T ss_pred -ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhh----hhhhhhhhhccCChHHHHHHHHhcCCC-
Confidence 2222378999999999999999865 4899999999988876421 00011 11111111111
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCcc
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEF 356 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~ 356 (447)
.-+...+|+|+++++++... ..| ++.+.+|..+
T Consensus 219 --------gR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG~~m 255 (256)
T d1k2wa_ 219 --------GRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGGNWM 255 (256)
T ss_dssp --------SSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTTSSC
T ss_pred --------CCCcCHHHHHHHHHHHhCchhCCccCceEEECcchhh
Confidence 12567899999999998654 245 6777665544
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=5.2e-20 Score=169.26 Aligned_cols=212 Identities=17% Similarity=0.128 Sum_probs=149.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQI 183 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~V 183 (447)
+++||++|||||+++||++++++|+++|++|++++|+.+... ++... ..++..+.+|+.++. +.++|++
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~g~iDil 78 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLV-SLAKE--CPGIEPVCVDLGDWDATEKALGGIGPVDLL 78 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHH--STTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHh--cCCCeEEEEeCCCHHHHHHHHHHcCCCeEE
Confidence 478999999999999999999999999999999998643221 11111 235778889997763 3569999
Q ss_pred EEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHH-----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCC
Q 013226 184 YHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKR-----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIG 253 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~-----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~ 253 (447)
|||||......+.+. .+..+++|+.++..+.+++.+ .+. ++|++||...+. +..
T Consensus 79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~~~ 142 (242)
T d1cyda_ 79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV----------------TFP 142 (242)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred EECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc----------------cCC
Confidence 999998765544432 456899999999988886532 233 899999987432 122
Q ss_pred CCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHH
Q 013226 254 VRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVS 330 (447)
Q Consensus 254 ~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 330 (447)
....|+.+|++.+.+++.++.+ +||++.+|.||.|..|........ ..+........++ .-+...+
T Consensus 143 ~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~--~~~~~~~~~~~pl---------~R~~~pe 211 (242)
T d1cyda_ 143 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSAD--PEFARKLKERHPL---------RKFAEVE 211 (242)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCC--HHHHHHHHHHSTT---------SSCBCHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCC--HHHHHHHHhcCCC---------CCCcCHH
Confidence 2378999999999999999875 489999999999876521100000 1222333332222 1256789
Q ss_pred HHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 331 DLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 331 D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
|+|+++++++.+. ..| ++.+.+|
T Consensus 212 eva~~v~fL~S~~s~~itG~~i~vDGG 238 (242)
T d1cyda_ 212 DVVNSILFLLSDRSASTSGGGILVDAG 238 (242)
T ss_dssp HHHHHHHHHHSGGGTTCCSSEEEESTT
T ss_pred HHHHHHHHHhCchhcCcCCceEEeCcc
Confidence 9999999999754 245 5666544
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=4e-20 Score=171.38 Aligned_cols=214 Identities=14% Similarity=0.144 Sum_probs=153.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
.+++||+++||||+++||++++++|+++|++|++++|+.+... +....+ ...++.++.+|++++.
T Consensus 7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAAN-HVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999998643322 111111 1346888999998763
Q ss_pred ccCCCEEEEeccCCCCCCcccC---hHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKFN---PVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~~---~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+.++|++|||||......++.+ .+..+++|+.++..+.+++. +.+. ++|++||...+.
T Consensus 86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~-------------- 151 (255)
T d1fmca_ 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN-------------- 151 (255)
T ss_dssp HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC--------------
T ss_pred cCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhc--------------
Confidence 2469999999998765554433 45689999999988887653 3344 899999987432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.+|++.+.+++.++.+ +||++.+|.||.|..+..... +-...........++. -
T Consensus 152 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~---~~~e~~~~~~~~~pl~---------R 217 (255)
T d1fmca_ 152 --KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV---ITPEIEQKMLQHTPIR---------R 217 (255)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CCHHHHHHHHHTCSSC---------S
T ss_pred --cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhcc---CCHHHHHHHHhcCCCC---------C
Confidence 2222378999999999999999876 489999999999876532111 1123333444433322 2
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+...+|+|+++++++.+. .+| ++.+.+|
T Consensus 218 ~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG 249 (255)
T d1fmca_ 218 LGQPQDIANAALFLCSPAASWVSGQILTVSGG 249 (255)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhcCCcCCEEEECcC
Confidence 567899999999999754 346 5666554
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.83 E-value=1.5e-20 Score=173.88 Aligned_cols=214 Identities=13% Similarity=0.071 Sum_probs=148.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+++||+++||||+++||+++++.|+++|++|++++|+.+..++.........++.++.+|++++. +.+
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999999999864432221111122357889999998763 346
Q ss_pred CCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHH----HCC--CeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 180 VDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~----~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
+|++|||||......+.+. ....+++|+.|+..+.+++. +.+ .++|++||...+.
T Consensus 83 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~--------------- 147 (251)
T d1zk4a1 83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV--------------- 147 (251)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS---------------
T ss_pred ceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec---------------
Confidence 9999999998765544432 44689999999999888764 333 3899999987431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh-----hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG-----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.+|++.+.+.+.++.+ +||++..|.||.|..|....... ........ ...+ ..
T Consensus 148 -~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~---~~~~~~~~--~~~p-------l~ 214 (251)
T d1zk4a1 148 -GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG---AEEAMSQR--TKTP-------MG 214 (251)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT---HHHHHTST--TTCT-------TS
T ss_pred -cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCC---HHHHHHHH--hCCC-------CC
Confidence 1122378999999999999988754 48999999999987643110000 11111111 1111 11
Q ss_pred ccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
-+...+|+|+++++++.+. ..| .+.+.+|
T Consensus 215 R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 247 (251)
T d1zk4a1 215 HIGEPNDIAYICVYLASNESKFATGSEFVVDGG 247 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCchhCCCcCcEEEECcc
Confidence 2678899999999999754 245 5555543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.83 E-value=5.1e-20 Score=170.92 Aligned_cols=219 Identities=16% Similarity=0.141 Sum_probs=151.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccccccCCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHHFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~------------ 176 (447)
+++||+++||||+++||++++++|+++|++|++.+|+.+...+ ++.......++..+.+|++++.
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999996443221 1112223447888999998763
Q ss_pred ccCCCEEEEeccCCCC-CCccc----ChHHHHHHHHHHHHHHHHHHHH----CC-CeEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 LLEVDQIYHLACPASP-VHYKF----NPVKTIKTNVVGTLNMLGLAKR----VG-ARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~-~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g-~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|++|||||+..+ ..+.+ +.+..+++|+.|+..+.+++.. .+ .++|++||...+-
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------------ 148 (258)
T d1iy8a_ 81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR------------ 148 (258)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS------------
T ss_pred hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhcc------------
Confidence 3469999999997543 22322 2556899999999998887632 33 3999999987431
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC----CCchHHHHHHHHHhCCCeEEecC
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID----DGRVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
+......|+.+|++.+.+++.++.+ +||++.+|.||.|..|..... ................++.
T Consensus 149 ----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~---- 220 (258)
T d1iy8a_ 149 ----GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSK---- 220 (258)
T ss_dssp ----BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTC----
T ss_pred ----CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCC----
Confidence 2222478999999999999999875 489999999999876421000 0000122223333332221
Q ss_pred CCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
-+...+|+|+++++++.+. ..| ++.+.+|..
T Consensus 221 -----R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 221 -----RYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQS 255 (258)
T ss_dssp -----SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred -----CCcCHHHHHHHHHHHhCchhcCCcCceEEcCcchh
Confidence 2567899999999999754 245 666665543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.83 E-value=2.9e-19 Score=166.90 Aligned_cols=221 Identities=15% Similarity=0.141 Sum_probs=150.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+++||++|||||+++||++++++|+++|++|++++|+.+..++...+......+.++.+|++++. +.+
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999999864432222212222346778899997763 246
Q ss_pred CCEEEEeccCCCCCC--c-cc---ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 180 VDQIYHLACPASPVH--Y-KF---NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~--~-~~---~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+|++|||||...... . +. +.+..+++|+.|+..+.+++. +.+. ++|++||...+..
T Consensus 83 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~------------- 149 (268)
T d2bgka1 83 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA------------- 149 (268)
T ss_dssp CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCC-------------
T ss_pred cceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccc-------------
Confidence 999999999754332 1 11 245688999999988888764 3344 8999999764321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
.......|+.+|++.+.+++.++.+ +||++.+|.||.|..|......... .............+ ..-
T Consensus 150 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~-~~~~~~~~~~~~~~-------~gr 219 (268)
T d2bgka1 150 --GEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVD-SSRVEELAHQAANL-------KGT 219 (268)
T ss_dssp --CTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCC-HHHHHHHHHHTCSS-------CSC
T ss_pred --ccccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCC-HHHHHHHHHhcccc-------CCC
Confidence 0111147999999999999999875 4899999999999887532111111 11122222111111 012
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
+...+|+|+++++++.+. ..| ++.+.+|-.
T Consensus 220 ~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG~t 253 (268)
T d2bgka1 220 LLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYT 253 (268)
T ss_dssp CCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHhChhhCCccCceEEECcCcc
Confidence 567899999999999754 345 666665543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.6e-19 Score=166.26 Aligned_cols=213 Identities=17% Similarity=0.137 Sum_probs=150.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQ 182 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~ 182 (447)
..++||++|||||+++||++++++|+++|++|++++|+.+... ++... ...+..+.+|+.++. +.++|+
T Consensus 3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~-~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~g~iDi 79 (244)
T d1pr9a_ 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLD-SLVRE--CPGIEPVCVDLGDWEATERALGSVGPVDL 79 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHH--STTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH-HHHHh--cCCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence 4579999999999999999999999999999999998643222 22222 235778888997763 456999
Q ss_pred EEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH-----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 183 IYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR-----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~-----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+|||||......... +....+++|+.++..+.+++.+ .+. ++|++||..... +.
T Consensus 80 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~----------------~~ 143 (244)
T d1pr9a_ 80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------------AV 143 (244)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CC
T ss_pred EEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc----------------cc
Confidence 999999876554433 2456899999998888776532 233 899999987532 12
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
.....|+.+|++.+.+++.++.+ +||++..|.||.|..|........ ...........|+ .-+...
T Consensus 144 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~--~~~~~~~~~~~pl---------~R~~~p 212 (244)
T d1pr9a_ 144 TNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSD--PHKAKTMLNRIPL---------GKFAEV 212 (244)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCS--HHHHHHHHTTCTT---------CSCBCH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccC--hHHHHHHHhcCCC---------CCCcCH
Confidence 22378999999999999999875 489999999999876532111111 2223333333222 126778
Q ss_pred HHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 330 SDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 330 ~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+|+|+++++++.+. .+| ++.+.+|
T Consensus 213 eevA~~v~fL~S~~a~~itG~~i~vDGG 240 (244)
T d1pr9a_ 213 EHVVNAILFLLSDRSGMTTGSTLPVEGG 240 (244)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHhCchhCCcCCcEEEECcc
Confidence 99999999999754 245 5555543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.82 E-value=8.3e-20 Score=168.85 Aligned_cols=212 Identities=12% Similarity=0.006 Sum_probs=150.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
.+.+|++|||||+++||+++++.|+++|++|++++|+.+...+ ....+ ...++..+.+|++++. +
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~-~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDS-VVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHH-HHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHH-HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999999999986433221 11111 1246888999998763 3
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|++|||||........+ +....+++|+.++..+.+++ ++.+. +||++||.....
T Consensus 86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~-------------- 151 (251)
T d2c07a1 86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT-------------- 151 (251)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH--------------
T ss_pred CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcC--------------
Confidence 46999999999866544433 35568999999998888765 33444 999999987431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.||++.+.+++.++.+ +||++.+|.||.|..+.... +............++. -
T Consensus 152 --~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~----~~~~~~~~~~~~~pl~---------R 216 (251)
T d2c07a1 152 --GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK----ISEQIKKNIISNIPAG---------R 216 (251)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---------CCHHHHHHHHTTCTTS---------S
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccc----cCHHHHHHHHhcCCCC---------C
Confidence 1112378999999999999999875 48999999999998765321 1233444444433321 2
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+...+|+|+++++++.+.. .| ++.+.+|
T Consensus 217 ~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG 248 (251)
T d2c07a1 217 MGTPEEVANLACFLSSDKSGYINGRVFVIDGG 248 (251)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 5678999999999997543 45 5555543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.5e-19 Score=166.83 Aligned_cols=216 Identities=16% Similarity=0.132 Sum_probs=149.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------cc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
.+++||+++||||+++||+++++.|+++|++|++++|+.+.. +.+.+. ..++.++.+|++++. +.
T Consensus 2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~-~~~~~~--~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (250)
T d1ydea1 2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGG-RALEQE--LPGAVFILCDVTQEDDVKTLVSETIRRFG 78 (250)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHh--cCCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence 467999999999999999999999999999999999864322 222222 235788899997763 24
Q ss_pred CCCEEEEeccCCCC-CCccc----ChHHHHHHHHHHHHHHHHHHH----HCCCeEEEEeCccccCCCCCCCCCCCcCCCC
Q 013226 179 EVDQIYHLACPASP-VHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQAETYWGNV 249 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~-~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~ 249 (447)
++|++|||||.... ...++ +.++.+++|+.|+.++++++. +.+.++|++||.....
T Consensus 79 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~--------------- 143 (250)
T d1ydea1 79 RLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI--------------- 143 (250)
T ss_dssp CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH---------------
T ss_pred CCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc---------------
Confidence 69999999996543 22322 255689999999988888764 3345999999987432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCcc--CCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 250 NPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCI--DDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 250 ~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.+|++.+.+++.++.+ +||++..|.||.|..|.... ....-....+.......++.
T Consensus 144 -~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~--------- 213 (250)
T d1ydea1 144 -GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLG--------- 213 (250)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTS---------
T ss_pred -cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCCC---------
Confidence 1112378999999999999999876 48999999999986542100 00000112233333332221
Q ss_pred ccccHHHHHHHHHHHHcCC--CCC-cEEecCCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD--HVG-PFNLGNPG 354 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~--~~g-~~~i~~~~ 354 (447)
-+...+|+|+++++++.+. .+| ++.+.+|-
T Consensus 214 R~g~p~eva~~v~fL~Sda~~itG~~i~vDGG~ 246 (250)
T d1ydea1 214 RMGQPAEVGAAAVFLASEANFCTGIELLVTGGA 246 (250)
T ss_dssp SCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhCccCCCcCCeEEECCCc
Confidence 2567899999999998632 235 56665553
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=1.1e-19 Score=167.96 Aligned_cols=216 Identities=17% Similarity=0.080 Sum_probs=151.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc--cCCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH--FGNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~------------~ 177 (447)
+++||+++||||+++||++++++|+++|++|++++|+.+...+...+. ....++.++.+|++++. +
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999999999654322211111 11346788999998763 3
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.++|++|||||......+.+ +.+..+++|+.++..+.+++.+ .+. ++|++||.....
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~-------------- 147 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE-------------- 147 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC--------------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhcc--------------
Confidence 46999999999865544433 2456899999999888887543 343 999999865321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
.+......|+.+|++.+.+++.++.+ +|+++.+|.||.|-.+....... -..........-++. -
T Consensus 148 -~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~--~~~~~~~~~~~~pl~---------R 215 (251)
T d1vl8a_ 148 -VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS--DPEKLDYMLKRIPLG---------R 215 (251)
T ss_dssp -CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT--CHHHHHHHHHTCTTS---------S
T ss_pred -ccCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccC--CHHHHHHHHhcCCCC---------C
Confidence 11112368999999999999999875 48999999999998764310000 022333444433332 1
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+...+|+|+++++++.... .| ++.+.+|
T Consensus 216 ~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG 247 (251)
T d1vl8a_ 216 TGVPEDLKGVAVFLASEEAKYVTGQIIFVDGG 247 (251)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCHHHHHHHHHHHhCchhCCCcCcEEEeCcC
Confidence 4567899999999987542 45 5666544
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.81 E-value=2.7e-19 Score=166.14 Aligned_cols=217 Identities=14% Similarity=0.031 Sum_probs=151.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------cc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~ 178 (447)
+++||+++||||+++||+++++.|+++|++|++.+|+.+...+...+. ....++.++.+|++++. +.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999999998644322211111 12346788899997752 23
Q ss_pred -CCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 179 -EVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 179 -~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
.+|++|||||........+ +....+++|+.++..+.+++. +.+. ++|++||.....
T Consensus 85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~-------------- 150 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL-------------- 150 (259)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS--------------
T ss_pred CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccc--------------
Confidence 4899999999866544433 245689999999988887753 3444 999999987432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCcc-CCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.+|+..+.+++.++.+ +||++.+|.||.|..|.... .........+......-++.
T Consensus 151 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~--------- 219 (259)
T d2ae2a_ 151 --AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALR--------- 219 (259)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTC---------
T ss_pred --ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCC---------
Confidence 1222378999999999999999876 48999999999987653110 00111122334444433322
Q ss_pred ccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 325 SFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
-+...+|+|+++++++.+. .+| ++.+.+|
T Consensus 220 R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 252 (259)
T d2ae2a_ 220 RMGEPKELAAMVAFLCFPAASYVTGQIIYVDGG 252 (259)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCchhCCCcCcEEEECCC
Confidence 2567899999999999754 245 5555443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.81 E-value=1.2e-19 Score=168.54 Aligned_cols=214 Identities=15% Similarity=0.080 Sum_probs=135.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------c-
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------L- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~- 177 (447)
+++||+++||||+++||+++++.|+++|++|++++|+.....+...+. ....++..+.+|++++. +
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999999998644322211111 12346888999997652 2
Q ss_pred cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCC-CeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVG-ARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g-~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
..+|++|||||........+ +.+..+++|+.|+..+.+++. +.+ .++|++||.....
T Consensus 85 g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~-------------- 150 (259)
T d1xq1a_ 85 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV-------------- 150 (259)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC--------------------
T ss_pred CCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccc--------------
Confidence 24899999999866544333 355689999999988888753 334 3999999977431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.+|++.+.+++.++.+ +||++.+|.||.|..|.... ..............+ ..-
T Consensus 151 --~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~---~~~~~~~~~~~~~~p---------l~R 216 (259)
T d1xq1a_ 151 --SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEA---VYDDEFKKVVISRKP---------LGR 216 (259)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------------
T ss_pred --cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhh---hchHHHHHHHHhCCC---------CCC
Confidence 1222378999999999999999876 48999999999987664210 000111111111111 112
Q ss_pred cccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+...+|+|.++++++.+. .+| .+.+.+|
T Consensus 217 ~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG 248 (259)
T d1xq1a_ 217 FGEPEEVSSLVAFLCMPAASYITGQTICVDGG 248 (259)
T ss_dssp -CCGGGGHHHHHHHTSGGGTTCCSCEEECCCC
T ss_pred CcCHHHHHHHHHHHhCchhcCCcCcEEEeCCC
Confidence 557789999999998644 245 4555444
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.81 E-value=3.8e-19 Score=164.56 Aligned_cols=210 Identities=17% Similarity=0.127 Sum_probs=147.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc--cccccccCCCceEEEecccccc-c------------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK--DNLIHHFGNPRFELIRHDVVEP-I------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~--~~~~~~~~~~~v~~~~~D~~~~-~------------ 176 (447)
.++||+||||||+++||.+++++|+++|++|++++|+.+... .++.......++.++..|++.. .
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999988654321 1112223445788899998632 1
Q ss_pred ccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC--------CCeEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV--------GARFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~--------g~r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+.++|++|||||... ....++++++|+.|+.++.+++.+. +.++|++||...+.
T Consensus 82 ~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~-------------- 143 (254)
T d1sbya1 82 LKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN-------------- 143 (254)
T ss_dssp HSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS--------------
T ss_pred cCCCCEEEeCCCCCC----HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc--------------
Confidence 246999999999654 3457789999999999988876431 13799999987542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCc-cCCCchHHHHHHHHHhCCCeEEecCCCeeE
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMC-IDDGRVVSNFVAQALRKEPLTVYGDGKQTR 324 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (447)
+......|+.||++...+++.++.+ .|+++..|.||.|..|-.. .....-....+.....+ +
T Consensus 144 --~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------------~ 209 (254)
T d1sbya1 144 --AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS------------H 209 (254)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT------------S
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhcccc------------C
Confidence 2223478999999999999999875 4899999999999865210 00000000011111111 1
Q ss_pred ccccHHHHHHHHHHHHcCCCCC-cEEecCC
Q 013226 325 SFQFVSDLVEGLIRLMEGDHVG-PFNLGNP 353 (447)
Q Consensus 325 ~~i~v~D~a~ai~~~l~~~~~g-~~~i~~~ 353 (447)
.....+++|++++.++++...| ++.+.+|
T Consensus 210 ~~~~~e~va~~~~~~~~~~~tG~vi~vdgG 239 (254)
T d1sbya1 210 PTQTSEQCGQNFVKAIEANKNGAIWKLDLG 239 (254)
T ss_dssp CCEEHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred CCCCHHHHHHHHHHhhhCCCCCCEEEECCC
Confidence 2346899999999999877777 4555444
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.8e-19 Score=170.50 Aligned_cols=217 Identities=15% Similarity=0.139 Sum_probs=149.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc---cccccc---cCCCceEEEeccccccc---------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK---DNLIHH---FGNPRFELIRHDVVEPI--------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~---~~~~~~---~~~~~v~~~~~D~~~~~--------- 176 (447)
.++||+++||||+++||++++++|+++|++|++++|+.+... +++... ....++..+.+|++++.
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 579999999999999999999999999999999999644322 111111 12347888999998763
Q ss_pred ---ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC----CC-eEEEEeCccccCCCCCCCCCCC
Q 013226 177 ---LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV----GA-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 ---~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+.++|++|||||........+ +....+++|+.++..+++++.+. +. ++|++||....+.
T Consensus 89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~~~--------- 159 (297)
T d1yxma1 89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGF--------- 159 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTCC---------
T ss_pred HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccccc---------
Confidence 246999999999765544433 24568999999999988876542 33 7888876543221
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
.....|+.+|++.+.+++.++.++ ||++.+|.||.|..+............+........++
T Consensus 160 --------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~pl------- 224 (297)
T d1yxma1 160 --------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPA------- 224 (297)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTT-------
T ss_pred --------cccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCC-------
Confidence 123789999999999999998764 89999999999987642111111111111111111111
Q ss_pred eeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
.-+...+|+|.++++++.+. .+| ++.+.+|.
T Consensus 225 --gR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~ 259 (297)
T d1yxma1 225 --KRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGR 259 (297)
T ss_dssp --SSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --CCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcCh
Confidence 12556799999999999754 245 66666553
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.80 E-value=4.6e-20 Score=170.77 Aligned_cols=215 Identities=19% Similarity=0.188 Sum_probs=146.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+++||+++||||+++||+++++.|+++|++|++.+|+.+.. +++...+ ..+..++.+|++++. +.+
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~-~~~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 80 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAG-QQLAAEL-GERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHH-HHHHHHH-CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHh-CCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999999999999999864322 2222222 235778889997763 346
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
+|++|||||...+....+ +.+..+++|+.++..+.+++.+ .+.+||++||...+. +
T Consensus 81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~----------------~ 144 (253)
T d1hxha_ 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL----------------P 144 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------C
T ss_pred CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc----------------C
Confidence 999999999876544433 2556899999999888877643 334999999987431 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh-----hCCcEEEEeeccccCCCCcc-CCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG-----LGIEARIARIFNTYGPRMCI-DDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~-----~~i~~~ivRp~~i~Gp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
......|+.+|++.+.+++.++.+ ++|++..|.||.|..|.... .+... ......... .....--
T Consensus 145 ~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~----~~~~~~~~~-----~~~~~gr 215 (253)
T d1hxha_ 145 IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGV----SKEMVLHDP-----KLNRAGR 215 (253)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTC----CHHHHBCBT-----TTBTTCC
T ss_pred ccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchh----hHHHHHhCc-----cccccCC
Confidence 222378999999999999988765 35999999999987542100 00000 001111100 0001113
Q ss_pred cccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 326 FQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+...+|+|+++++++.+.. .| ++++.+|
T Consensus 216 ~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 216 AYMPERIAQLVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp EECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred CCCHHHHHHHHHHHhChhhCCCcCcEEEECcc
Confidence 5678999999999997542 45 5555443
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=6.4e-19 Score=161.14 Aligned_cols=205 Identities=14% Similarity=0.101 Sum_probs=144.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc------cccCCCEEEEe
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP------ILLEVDQIYHL 186 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------~~~~~d~Vih~ 186 (447)
+++|++|||||+++||+++++.|+++|++|++++|+.+ .+. .....++.+|+.+. .+.++|++|||
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~----~l~----~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnn 73 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE----LLK----RSGHRYVVCDLRKDLDLLFEKVKEVDILVLN 73 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHH----HTCSEEEECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHH----hcCCcEEEcchHHHHHHHHHHhCCCcEEEec
Confidence 57999999999999999999999999999999998532 111 12345667787653 34579999999
Q ss_pred ccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCCh
Q 013226 187 ACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSC 257 (447)
Q Consensus 187 Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~ 257 (447)
||......+.+ +..+.+++|+.++..+.+++ ++.+. ++|++||..... +......
T Consensus 74 AG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~----------------~~~~~~~ 137 (234)
T d1o5ia_ 74 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS----------------PIENLYT 137 (234)
T ss_dssp CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------CCTTBHH
T ss_pred ccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccc----------------ccccccc
Confidence 99765544333 24567899999988887765 34444 899999976532 2223478
Q ss_pred HHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 334 (447)
|+.+|++.+.+++.++.++ ||++.+|.||.+..+..... +-..........-++ .-+...+|+|.
T Consensus 138 Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~---~~~~~~~~~~~~~pl---------~R~~~pediA~ 205 (234)
T d1o5ia_ 138 SNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKEL---LSEEKKKQVESQIPM---------RRMAKPEEIAS 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHH---SCHHHHHHHHTTSTT---------SSCBCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhh---cCHHHHHHHHhcCCC---------CCCcCHHHHHH
Confidence 9999999999999998764 89999999999877642110 001122222222222 12677899999
Q ss_pred HHHHHHcCCC---CC-cEEecCC
Q 013226 335 GLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 335 ai~~~l~~~~---~g-~~~i~~~ 353 (447)
++++++.+.. +| ++.+.+|
T Consensus 206 ~v~fL~S~~s~~itG~~i~vDGG 228 (234)
T d1o5ia_ 206 VVAFLCSEKASYLTGQTIVVDGG 228 (234)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHhChhhcCCcCcEEEECcc
Confidence 9999997542 45 5556544
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.80 E-value=4.2e-19 Score=164.95 Aligned_cols=215 Identities=15% Similarity=0.103 Sum_probs=148.5
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
+++||+++||||+++||+++++.|+++|++|++++|+.+... .....+ ...++..+.+|++++. +
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALE-KAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999998643322 111111 1346788999998763 2
Q ss_pred cCCCEEEEeccCCCC-CCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 LEVDQIYHLACPASP-VHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~-~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
.++|++|||||.... ....+ +....+++|+.++..+++++. +.+. ++|++||...+.
T Consensus 81 g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~------------- 147 (260)
T d1zema1 81 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK------------- 147 (260)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS-------------
T ss_pred CCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc-------------
Confidence 469999999997643 22332 245688999999988888753 3344 999999987442
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCc------------cCCCchHHHHHHHHHhCC
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMC------------IDDGRVVSNFVAQALRKE 312 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~------------~~~~~~~~~~~~~~~~~~ 312 (447)
+......|+.+|++.+.+++.++.++ ||++..|.||.|-.+... .........+...+...-
T Consensus 148 ---~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T d1zema1 148 ---GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSV 224 (260)
T ss_dssp ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTS
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcC
Confidence 11123789999999999999998764 899999999998765210 000011122233333332
Q ss_pred CeEEecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecC
Q 013226 313 PLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGN 352 (447)
Q Consensus 313 ~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~ 352 (447)
|+. -+...+|+|+++++++.+.. +| ++.+.+
T Consensus 225 Pl~---------R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG 259 (260)
T d1zema1 225 PMR---------RYGDINEIPGVVAFLLGDDSSFMTGVNLPIAG 259 (260)
T ss_dssp TTS---------SCBCGGGSHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred CCC---------CCcCHHHHHHHHHHHhCchhcCccCCeEEeCC
Confidence 222 14567899999999997542 35 455543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.80 E-value=6.9e-19 Score=163.28 Aligned_cols=213 Identities=16% Similarity=0.092 Sum_probs=148.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.||++|||||+++||++++++|+++|++|++.+|+.+...+ ..+.+ ...++.++.+|++++. +.+
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~-~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRT-TLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 37899999999999999999999999999999996433221 11111 2346888999998763 346
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHC------CC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRV------GA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~------g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
+|++|||||........+ +.+..+++|+.|+..+.+++.++ +. ++|++||...+.
T Consensus 80 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~-------------- 145 (257)
T d2rhca1 80 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ-------------- 145 (257)
T ss_dssp CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS--------------
T ss_pred CCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc--------------
Confidence 999999999876554433 24568999999999999987542 33 899999987432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccC-------CCchHHHHHHHHHhCCCeEEec
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCID-------DGRVVSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 318 (447)
+......|+.+|++.+.+++.++.++ ||++.+|.||.|-.|..... ...........+...-|+.
T Consensus 146 --~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Plg--- 220 (257)
T d2rhca1 146 --GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIG--- 220 (257)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTS---
T ss_pred --ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCC---
Confidence 22223789999999999999998764 79999999998865421000 0000122233333322221
Q ss_pred CCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGN 352 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~ 352 (447)
-+...+|+|+++++++.+. ..| ++.+.+
T Consensus 221 ------R~~~pedia~~v~fL~S~~s~~itG~~i~vDG 252 (257)
T d2rhca1 221 ------RYVQPSEVAEMVAYLIGPGAAAVTAQALNVCG 252 (257)
T ss_dssp ------SCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred ------CCcCHHHHHHHHHHHhCchhcCCcCceEEECc
Confidence 2567899999999999654 345 555544
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.80 E-value=4.3e-19 Score=165.37 Aligned_cols=218 Identities=12% Similarity=0.050 Sum_probs=142.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccc---cccc-cCCCceEEEeccccccc-----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDN---LIHH-FGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~---~~~~-~~~~~v~~~~~D~~~~~----------- 176 (447)
+++||+++||||+++||++++++|+++|++|++++|+.+...+. +... ....++.++.+|++++.
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999964432211 1111 12346889999997763
Q ss_pred -ccCCCEEEEeccCCCCCCc--------ccChHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeCcc-ccCCCCCCCCC
Q 013226 177 -LLEVDQIYHLACPASPVHY--------KFNPVKTIKTNVVGTLNMLGLAKR----VGARFLLTSTSE-VYGDPLQHPQA 242 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~--------~~~~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS~~-v~g~~~~~~~~ 242 (447)
+.++|++|||||...+... .++.+..+++|+.++..+.+++.+ .+.++|+++|.. ..
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~--------- 152 (264)
T d1spxa_ 82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGL--------- 152 (264)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSS---------
T ss_pred HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeecccc---------
Confidence 2469999999997532211 123556899999999888877643 334666666643 22
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC-----CCchHHHHHHHHHhCCCe
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID-----DGRVVSNFVAQALRKEPL 314 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~-----~~~~~~~~~~~~~~~~~~ 314 (447)
.+......|+.+|++.+.+++.++.+ +||++..|.||.|-.+..... ...-...........-|+
T Consensus 153 -------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 225 (264)
T d1spxa_ 153 -------HATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPA 225 (264)
T ss_dssp -------SCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTT
T ss_pred -------ccCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCC
Confidence 11222367999999999999999876 489999999999876542110 000011122222222221
Q ss_pred EEecCCCeeEccccHHHHHHHHHHHHcCC----CCC-cEEecCCC
Q 013226 315 TVYGDGKQTRSFQFVSDLVEGLIRLMEGD----HVG-PFNLGNPG 354 (447)
Q Consensus 315 ~~~~~~~~~~~~i~v~D~a~ai~~~l~~~----~~g-~~~i~~~~ 354 (447)
. -+...+|+|+++++++.++ ..| ++.+.+|.
T Consensus 226 ~---------R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~ 261 (264)
T d1spxa_ 226 G---------VMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGS 261 (264)
T ss_dssp S---------SCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred C---------CCcCHHHHHHHHHHHhCCcccCCccCceEEeCCCh
Confidence 1 2567899999999998633 356 56665543
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.79 E-value=3.6e-19 Score=163.74 Aligned_cols=207 Identities=14% Similarity=0.056 Sum_probs=146.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCCCE
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEVDQ 182 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d~ 182 (447)
.||||||+++||++++++|+++|++|++.+++.....+.+.+.. ...++.++.+|+.++. +.++|+
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 82 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV 82 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence 69999999999999999999999999988765333322222221 1346788999998763 246999
Q ss_pred EEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCcccc-CCCCCCCCCCCcCCCCCCC
Q 013226 183 IYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVY-GDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 183 Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~-g~~~~~~~~e~~~~~~~~~ 252 (447)
+|||||......+.+ +.+..+++|+.++..+.+++. +.+. +||++||...+ +.
T Consensus 83 LVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~----------------- 145 (244)
T d1edoa_ 83 VVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN----------------- 145 (244)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-----------------
T ss_pred cccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCC-----------------
Confidence 999999876554443 245689999999988887753 3344 99999998743 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
.....|+.+|++.+.+.+.++.++ |+++.+|.||.+-.|... .+............++. -+...
T Consensus 146 ~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~----~~~~~~~~~~~~~~pl~---------R~~~p 212 (244)
T d1edoa_ 146 IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTA----KLGEDMEKKILGTIPLG---------RTGQP 212 (244)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH----TTCHHHHHHHHTSCTTC---------SCBCH
T ss_pred CCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHH----HhhHHHHHHHHhcCCCC---------CCcCH
Confidence 123789999999999999998764 899999999988764321 11123333333332221 25678
Q ss_pred HHHHHHHHHHHc-CC---CCC-cEEecCC
Q 013226 330 SDLVEGLIRLME-GD---HVG-PFNLGNP 353 (447)
Q Consensus 330 ~D~a~ai~~~l~-~~---~~g-~~~i~~~ 353 (447)
+|+|+++++++. .. ..| ++.+.+|
T Consensus 213 ~dvA~~v~fLa~S~~a~~itG~~i~vdGG 241 (244)
T d1edoa_ 213 ENVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp HHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred HHHHHHHHHHHCCchhcCCcCCeEEeCCC
Confidence 999999999863 33 245 5555544
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.79 E-value=7.6e-19 Score=162.92 Aligned_cols=216 Identities=13% Similarity=0.063 Sum_probs=149.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------c
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------L 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~ 177 (447)
+++||++|||||+++||++++++|+++|++|++++|+.+...+ ..+.+ ....+.++.+|+.+.. +
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~-~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDE-CLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999997533221 11111 2346778899997763 2
Q ss_pred -cCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 178 -LEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 178 -~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
..+|++|||||........+ +...++++|+.++..+.+++.. .+. ++|++||.....
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~------------- 148 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS------------- 148 (258)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS-------------
T ss_pred CCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc-------------
Confidence 23899999999876544433 2556899999999888887643 334 999999987542
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccC--CCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.+|.+.+.+++.++.++ ||++.+|.||.|..|..... ...........+....++.
T Consensus 149 ---~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg------- 218 (258)
T d1ae1a_ 149 ---ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMG------- 218 (258)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTC-------
T ss_pred ---ccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCCC-------
Confidence 22224789999999999999998764 89999999999987642110 0101123333333322221
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
-+...+|+|+++++++.+. ..| .+.+.+|
T Consensus 219 --R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG 251 (258)
T d1ae1a_ 219 --RAGKPQEVSALIAFLCFPAASYITGQIIWADGG 251 (258)
T ss_dssp --SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --CCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCC
Confidence 2678899999999999644 346 5555543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.79 E-value=1.2e-18 Score=163.10 Aligned_cols=221 Identities=12% Similarity=0.080 Sum_probs=146.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccccc-cCCCceEEEeccccccc-----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHH-FGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~-~~~~~v~~~~~D~~~~~----------- 176 (447)
+++||+++||||+++||+++++.|+++|++|++.+|+.+...+ ++... ....++..+.+|++++.
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999996442221 11111 12346889999998763
Q ss_pred -ccCCCEEEEeccCCCCCCcc-----cC---hHHHHHHHHHHHHHHHHHHHH----CCCeEEEEeC-ccccCCCCCCCCC
Q 013226 177 -LLEVDQIYHLACPASPVHYK-----FN---PVKTIKTNVVGTLNMLGLAKR----VGARFLLTST-SEVYGDPLQHPQA 242 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~-----~~---~~~~~~~Nv~gt~~ll~aa~~----~g~r~v~~SS-~~v~g~~~~~~~~ 242 (447)
+.++|++|||||...+..+. .+ ....+++|+.++..+.+++.. .+..+|+++| .+..
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~--------- 152 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP--------- 152 (272)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS---------
T ss_pred HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccc---------
Confidence 24699999999986543322 11 456789999999888887643 3345565555 3322
Q ss_pred CCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC--CCchHHHHHHHHHhC-CCeEE
Q 013226 243 ETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID--DGRVVSNFVAQALRK-EPLTV 316 (447)
Q Consensus 243 e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~~~~~-~~~~~ 316 (447)
.+......|+.+|++.+.+++.++.+ +||++.+|.||.|-.+..... .......+....... ..+++
T Consensus 153 -------~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 225 (272)
T d1xkqa_ 153 -------QAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPI 225 (272)
T ss_dssp -------SCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT
T ss_pred -------cCCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCCC
Confidence 11222378999999999999999876 489999999999876532100 011111111111111 11111
Q ss_pred ecCCCeeEccccHHHHHHHHHHHHcCC----CCC-cEEecCCCc
Q 013226 317 YGDGKQTRSFQFVSDLVEGLIRLMEGD----HVG-PFNLGNPGE 355 (447)
Q Consensus 317 ~~~~~~~~~~i~v~D~a~ai~~~l~~~----~~g-~~~i~~~~~ 355 (447)
.-+...+|+|+++++++.++ .+| ++.+.+|..
T Consensus 226 -------gR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~ 262 (272)
T d1xkqa_ 226 -------GAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTS 262 (272)
T ss_dssp -------SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred -------CCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHH
Confidence 12567899999999998532 356 666665543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=6.3e-19 Score=163.52 Aligned_cols=217 Identities=11% Similarity=0.007 Sum_probs=145.5
Q ss_pred ccCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------ 176 (447)
..++||++|||||+| +||++++++|+++|++|++.+|+.....+.............+.+|+.++.
T Consensus 4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (256)
T d1ulua_ 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA 83 (256)
T ss_dssp ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHh
Confidence 357999999999998 899999999999999999888853221111111112235677889997762
Q ss_pred ccCCCEEEEeccCCCCCC----c-c---cChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCCc
Q 013226 177 LLEVDQIYHLACPASPVH----Y-K---FNPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~----~-~---~~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+.++|++|||||...... . + .+....+++|+.++..+.+++...- .++|++||.....
T Consensus 84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~----------- 152 (256)
T d1ulua_ 84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK----------- 152 (256)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-----------
T ss_pred cCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC-----------
Confidence 246999999999753211 1 1 1244578999999999998876542 3899999987532
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.+|++.+.+++.++.+ +|+++.+|.||.|..+....... .........+.-++.
T Consensus 153 -----~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~--~~~~~~~~~~~~pl~------- 218 (256)
T d1ulua_ 153 -----VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPG--FTKMYDRVAQTAPLR------- 218 (256)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------CHHHHHHHHHHSTTS-------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhh--hHHHHHHHHhcCCCC-------
Confidence 2223478999999999999999876 48999999999988764321111 123333333333321
Q ss_pred eEccccHHHHHHHHHHHHcCCC---CC-cEEecCCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPG 354 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~ 354 (447)
-+...+|+|+++++++.+.. +| ++.+.+|.
T Consensus 219 --R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 252 (256)
T d1ulua_ 219 --RNITQEEVGNLGLFLLSPLASGITGEVVYVDAGY 252 (256)
T ss_dssp --SCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --CCcCHHHHHHHHHHHhCchhCCccCCeEEECcCE
Confidence 25678999999999997542 45 56665543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.4e-18 Score=159.42 Aligned_cols=207 Identities=15% Similarity=0.038 Sum_probs=143.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccccccCCCceEEEeccccccc-----------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHHFGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~----------- 176 (447)
.++++|++|||||+++||.++++.|+++|++|++.+|+.....+ ++.......++.++.+|+.++.
T Consensus 6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999986432221 1121122347888999998863
Q ss_pred -ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCC---CeEEEEeCccccCCCCCCCCCCC
Q 013226 177 -LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVG---ARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g---~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+.++|++|||||...+..... .....+++|+.++..+.+++ ++.+ .++|++||.+.+..
T Consensus 86 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~--------- 156 (257)
T d1xg5a_ 86 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV--------- 156 (257)
T ss_dssp HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC---------
T ss_pred hcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC---------
Confidence 346999999999865544432 24568899999988877665 3433 39999999874321
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh-----hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG-----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGD 319 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (447)
.|......|+.+|+..+.+++.++.+ .++++.+|.||.+-.+........... ......+
T Consensus 157 -----~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~----~~~~~~~------ 221 (257)
T d1xg5a_ 157 -----LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPE----KAAATYE------ 221 (257)
T ss_dssp -----CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHH----HHHHHHC------
T ss_pred -----CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHH----HHHhcCC------
Confidence 12222366999999999999998754 489999999987764421100011111 1111111
Q ss_pred CCeeEccccHHHHHHHHHHHHcCCC
Q 013226 320 GKQTRSFQFVSDLVEGLIRLMEGDH 344 (447)
Q Consensus 320 ~~~~~~~i~v~D~a~ai~~~l~~~~ 344 (447)
...++..+|+|+++++++.++.
T Consensus 222 ---~~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 222 ---QMKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp ------CBCHHHHHHHHHHHHHSCT
T ss_pred ---CCCCcCHHHHHHHHHHHhCChh
Confidence 1236789999999999998764
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.78 E-value=3.3e-18 Score=158.43 Aligned_cols=212 Identities=19% Similarity=0.121 Sum_probs=144.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------ccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------LLEVD 181 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------~~~~d 181 (447)
|.+|||||+++||++++++|+++|++|++.+|+.+... ++...+ ...++..+.+|++++. +.++|
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~-~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAK-AVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 45799999999999999999999999999999643322 111111 1346888999998763 34699
Q ss_pred EEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHH----HCC--CeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 182 QIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAK----RVG--ARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~----~~g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
++|||||......+.+ +.+..+++|+.|+.++++++. +.+ .++|++||...+. +
T Consensus 81 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~----------------~ 144 (255)
T d1gega_ 81 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV----------------G 144 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------C
T ss_pred EEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc----------------c
Confidence 9999999866544433 245689999999998888753 333 3799999987431 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCC-------CchHHHHHHHHHhCCCeEEecCCC
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDD-------GRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
......|+.+|++.+.+++.++.+ +||++.+|.||.|-.|...... ..........+.+..++
T Consensus 145 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl------- 217 (255)
T d1gega_ 145 NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITL------- 217 (255)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTT-------
T ss_pred CcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCC-------
Confidence 222378999999999999999865 4899999999988654210000 00000111111221111
Q ss_pred eeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.-+...+|+|+++++++.+.. .| ++.+.+|
T Consensus 218 --~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG 251 (255)
T d1gega_ 218 --GRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGG 251 (255)
T ss_dssp --CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred --CCCcCHHHHHHHHHHHhCchhCCccCcEEEecCC
Confidence 125678999999999997542 45 5555554
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.78 E-value=9.8e-19 Score=160.55 Aligned_cols=211 Identities=18% Similarity=0.157 Sum_probs=149.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.++||+++||||+++||+.++++|+++|++|++.+|+.+...+.. ..+ ..++.++.+|+.++. +.+
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~ 79 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAV-AAL-EAEAIAVVADVSDPKAVEAVFAEALEEFGR 79 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTC-CSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HHc-CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999999999999754332222 222 246778899997763 346
Q ss_pred CCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHCCC---eEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 180 VDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVGA---RFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~g~---r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
+|++|||||......+.+ .....+++|+.++..+.+++...-. .++++||.+... .
T Consensus 80 iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~-----------------~ 142 (241)
T d2a4ka1 80 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-----------------A 142 (241)
T ss_dssp CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-----------------H
T ss_pred ccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccc-----------------c
Confidence 999999999765544333 2456899999999999998765432 455555544321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
.....|+.+|++.|.+++.+++++ |+++.+|.||.+-.+... .+.........+..++. -+...
T Consensus 143 ~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~----~~~~~~~~~~~~~~p~~---------r~~~p 209 (241)
T d2a4ka1 143 FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA----GLPPWAWEQEVGASPLG---------RAGRP 209 (241)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT----TSCHHHHHHHHHTSTTC---------SCBCH
T ss_pred cCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHH----hhhHhHHHHHHhCCCCC---------CCcCH
Confidence 123679999999999999998875 799999999998665321 12233444444443332 25678
Q ss_pred HHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 330 SDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 330 ~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
+|+|+++++++.+. ..| ++.+.+|.
T Consensus 210 ~dva~~v~fL~S~~s~~itG~~i~vDGG~ 238 (241)
T d2a4ka1 210 EEVAQAALFLLSEESAYITGQALYVDGGR 238 (241)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHHHHHhcchhCCCcCceEEeCCCc
Confidence 99999999999754 345 56665543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.5e-19 Score=167.58 Aligned_cols=217 Identities=18% Similarity=0.150 Sum_probs=147.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccccccCCCceEEEeccccccc------------cc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHHFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
.||++|||||+++||+++++.|+++|++|++++|+.+...+ ++.......++.++.+|++++. +.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999997543221 1122223457889999998763 24
Q ss_pred CCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHH----C--C--CeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 179 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR----V--G--ARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~----~--g--~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
++|++|||||.... .+.++.+++|+.++.++.+++.+ . + .+||++||...+-
T Consensus 82 ~iDilVnnAg~~~~----~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~---------------- 141 (254)
T d2gdza1 82 RLDILVNNAGVNNE----KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM---------------- 141 (254)
T ss_dssp CCCEEEECCCCCCS----SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS----------------
T ss_pred CcCeeccccccccc----ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc----------------
Confidence 69999999997543 45678899999998887776643 2 1 2799999987431
Q ss_pred CCCCCChHHHHHHHHHHHHHH--HHh---hhCCcEEEEeeccccCCCCccCCC-ch---HHHHHHHHHhCCCeEEecCCC
Q 013226 251 PIGVRSCYDEGKRTAETLTMD--YHR---GLGIEARIARIFNTYGPRMCIDDG-RV---VSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~--~~~---~~~i~~~ivRp~~i~Gp~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~ 321 (447)
+......|+.||++.+.+++. ++. .+|+++.+|.||.|-.|....... .- ...+...+... ++
T Consensus 142 ~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~--~p------ 213 (254)
T d2gdza1 142 PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDM--IK------ 213 (254)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHH--HH------
T ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhc--CC------
Confidence 222237899999999999885 343 358999999999886542100000 00 00000001000 00
Q ss_pred eeEccccHHHHHHHHHHHHcCCC-CC-cEEecCCCccCHH
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH-VG-PFNLGNPGEFTML 359 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~-~g-~~~i~~~~~~s~~ 359 (447)
..-+...+|+|+++++++.++. +| ++.+.+|..+.++
T Consensus 214 -~~r~~~pedvA~~v~fL~s~~~itG~~i~VdGG~~~~~~ 252 (254)
T d2gdza1 214 -YYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQ 252 (254)
T ss_dssp -HHCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEEC
T ss_pred -CCCCcCHHHHHHHHHHHHcCCCCCCCEEEECCCCeeecc
Confidence 0124677999999999998753 34 7777776655443
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.4e-18 Score=158.27 Aligned_cols=214 Identities=14% Similarity=0.078 Sum_probs=148.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc--------ccCCCEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI--------LLEVDQI 183 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~--------~~~~d~V 183 (447)
+++||++|||||+++||+++++.|+++|++|++++|+++.. +++ .....+.....|+.... +.++|++
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l-~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~l 78 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKL-QEL---EKYPGIQTRVLDVTKKKQIDQFANEVERLDVL 78 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-GGG---GGSTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHH---HhccCCceeeeeccccccccccccccccceeE
Confidence 37899999999999999999999999999999999964322 222 22335666666664442 3469999
Q ss_pred EEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCC
Q 013226 184 YHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGV 254 (447)
Q Consensus 184 ih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~ 254 (447)
|||||......+.+ .....+++|+.++..+.+++.. .+. ++|++||...-- .+...
T Consensus 79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~---------------~~~~~ 143 (245)
T d2ag5a1 79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV---------------KGVVN 143 (245)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT---------------BCCTT
T ss_pred EecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhcc---------------CCccc
Confidence 99999876654443 2456899999999988887643 344 999999865210 12233
Q ss_pred CChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC--CCchHHHHHHHHHhCCCeEEecCCCeeEccccH
Q 013226 255 RSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID--DGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFV 329 (447)
Q Consensus 255 ~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (447)
...|+.+|++.+.+++.++.+ +||++.+|.||.|-.|..... .......+.......-++. -+...
T Consensus 144 ~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~---------R~~~p 214 (245)
T d2ag5a1 144 RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTG---------RFATA 214 (245)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTS---------SCEEH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCC---------CCcCH
Confidence 478999999999999999876 489999999999876532100 0001122333333332221 25678
Q ss_pred HHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 330 SDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 330 ~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+|+|+++.+++.++. +| ++.+.+|
T Consensus 215 edva~~v~fL~s~~s~~iTG~~i~VDGG 242 (245)
T d2ag5a1 215 EEIAMLCVYLASDESAYVTGNPVIIDGG 242 (245)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred HHHHHHHHHHhChhhCCCcCceEEeCCC
Confidence 999999999997543 45 5666554
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.78 E-value=2e-18 Score=160.31 Aligned_cols=218 Identities=16% Similarity=0.102 Sum_probs=150.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
.++.||++|||||+++||+++++.|+++|++|++.+++.....+.....+ ...++..+.+|++++.
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999988775443333322222 2246788999998752
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCcc-ccCCCCCCCCCCCcCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSE-VYGDPLQHPQAETYWGN 248 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~-v~g~~~~~~~~e~~~~~ 248 (447)
..++|++|||||......... ..+..+++|+.++..+++++.++- .++++++|.. .+.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~-------------- 147 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT-------------- 147 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC--------------
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc--------------
Confidence 246999999999875554433 245689999999999999886642 2666666654 221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCC---------ccCCCchHHHHHHHHHhCCCeEE
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRM---------CIDDGRVVSNFVAQALRKEPLTV 316 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~---------~~~~~~~~~~~~~~~~~~~~~~~ 316 (447)
+......|+.+|++.+.+++.++.+ .|+++.+|.||.+-.+.. ..........+...+....++.
T Consensus 148 --~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~- 224 (259)
T d1ja9a_ 148 --GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLK- 224 (259)
T ss_dssp --SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTS-
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCC-
Confidence 1122378999999999999999875 489999999999864310 0011111233333344443332
Q ss_pred ecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 317 YGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 317 ~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
-+...+|+|+++++++.++. +| .+.+.+|
T Consensus 225 --------R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG 257 (259)
T d1ja9a_ 225 --------RIGYPADIGRAVSALCQEESEWINGQVIKLTGG 257 (259)
T ss_dssp --------SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --------CCcCHHHHHHHHHHHhCchhcCCcCceEEeCCC
Confidence 25678999999999998653 45 5555443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=7e-19 Score=161.60 Aligned_cols=195 Identities=10% Similarity=-0.001 Sum_probs=142.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc--cCCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH--FGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~------------ 176 (447)
.+++||+++||||+++||++++++|+++|++|++++|+.+... ++... ....++..+.+|+++..
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~-~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLE-ETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999644322 11111 12346888999998873
Q ss_pred ccCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCC
Q 013226 177 LLEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWG 247 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~ 247 (447)
+.++|++|||||........+. .++++++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~------------- 148 (244)
T d1yb1a_ 82 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV------------- 148 (244)
T ss_dssp TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC-------------
T ss_pred cCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC-------------
Confidence 3469999999998765544432 4468999999998888765 44454 999999987431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhh------hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 248 NVNPIGVRSCYDEGKRTAETLTMDYHRG------LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 248 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~------~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
+......|+.||++.+.+.+.++.+ .|+++++|.||.|-.+... . .. .
T Consensus 149 ---~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~---~--------------~~------~ 202 (244)
T d1yb1a_ 149 ---SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIK---N--------------PS------T 202 (244)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTT---C--------------TH------H
T ss_pred ---CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhh---C--------------cC------c
Confidence 2222378999999999999999865 3799999999987654210 0 00 0
Q ss_pred eeEccccHHHHHHHHHHHHcCCCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~~ 345 (447)
....++..+|+|+.++..+..+..
T Consensus 203 ~~~~~~~pe~va~~i~~~~~~~~~ 226 (244)
T d1yb1a_ 203 SLGPTLEPEEVVNRLMHGILTEQK 226 (244)
T ss_dssp HHCCCCCHHHHHHHHHHHHHTTCS
T ss_pred cccCCCCHHHHHHHHHHHHhcCCc
Confidence 011245679999999988876553
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.78 E-value=9.8e-19 Score=162.53 Aligned_cols=221 Identities=14% Similarity=0.068 Sum_probs=152.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~------------ 176 (447)
.+++||++|||||+++||++++++|+++|++|++++|+.....+...+.. ...++..+.+|++++.
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999997554332211111 1346888999998763
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHHHH-----CCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLAKR-----VGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa~~-----~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|++|||||........+ +.++.+++|+.|+..+.+++.+ .+. +++.+||...+.......
T Consensus 85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~------ 158 (260)
T d1h5qa_ 85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL------ 158 (260)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEET------
T ss_pred hCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccccc------
Confidence 346999999999865544433 2456889999999888776532 233 677777765432111000
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
.+......|+.+|++.+.+++.++.+ +|+++.+|.||.|-.+..... ...+.......-++.
T Consensus 159 ---~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~----~~~~~~~~~~~~pl~-------- 223 (260)
T d1h5qa_ 159 ---NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM----DKKIRDHQASNIPLN-------- 223 (260)
T ss_dssp ---TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS----CHHHHHHHHHTCTTS--------
T ss_pred ---ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhcc----CHHHHHHHHhcCCCC--------
Confidence 11122367999999999999999875 489999999999876643221 133444444443332
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
-+...+|+|+++++++.+. ..| ++.+.+|
T Consensus 224 -R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 256 (260)
T d1h5qa_ 224 -RFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 256 (260)
T ss_dssp -SCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred -CCcCHHHHHHHHHHHhcchhCCCcCceEEECCC
Confidence 1456789999999999754 245 5555544
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.77 E-value=2.6e-18 Score=160.79 Aligned_cols=220 Identities=12% Similarity=0.045 Sum_probs=146.8
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcc---ccccc-cCCCceEEEeccccccc-----------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKD---NLIHH-FGNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~---~~~~~-~~~~~v~~~~~D~~~~~----------- 176 (447)
+++||+++||||+++||+++++.|+++|++|++++|+.+...+ ++... ....++..+.+|++++.
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999996432221 11111 12346889999998763
Q ss_pred -ccCCCEEEEeccCCCCCC--cc----cChHHHHHHHHHHHHHHHHHHHH----CCC-eEEEEeCccccCCCCCCCCCCC
Q 013226 177 -LLEVDQIYHLACPASPVH--YK----FNPVKTIKTNVVGTLNMLGLAKR----VGA-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~--~~----~~~~~~~~~Nv~gt~~ll~aa~~----~g~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+.++|++|||||...... .. ++.+..+++|+.++..+.+++.+ .+. +++++||.+...
T Consensus 81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~---------- 150 (274)
T d1xhla_ 81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ---------- 150 (274)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS----------
T ss_pred HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccc----------
Confidence 246999999999653321 11 12456899999999888887643 344 777777765321
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccC-CCchHHHHHHHHHhC--CCeEEec
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCID-DGRVVSNFVAQALRK--EPLTVYG 318 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 318 (447)
+......|+.+|++.+.+++.++.+ +||++..|.||.|-.|..... .......-....+.. ..+++
T Consensus 151 ------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPl-- 222 (274)
T d1xhla_ 151 ------AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPV-- 222 (274)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT--
T ss_pred ------cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCC--
Confidence 1122368999999999999999876 489999999999976532110 011111111111111 11111
Q ss_pred CCCeeEccccHHHHHHHHHHHHcC-C---CCC-cEEecCCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEG-D---HVG-PFNLGNPG 354 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~-~---~~g-~~~i~~~~ 354 (447)
.-+...+|+|+++++++.. . ..| ++.+.+|.
T Consensus 223 -----gR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~ 258 (274)
T d1xhla_ 223 -----GHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGS 258 (274)
T ss_dssp -----SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred -----CCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCH
Confidence 1256789999999999853 1 356 66666554
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.77 E-value=5.3e-18 Score=158.62 Aligned_cols=222 Identities=16% Similarity=0.111 Sum_probs=151.3
Q ss_pred CccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc--CCCceEEEeccccccc---------
Q 013226 108 PLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI--------- 176 (447)
Q Consensus 108 ~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~--------- 176 (447)
|...+++||++|||||+++||++++++|+++|++|++++|+.....+.....+ ...++.++.+|+.++.
T Consensus 11 ~~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~ 90 (272)
T d1g0oa_ 11 PQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEA 90 (272)
T ss_dssp GGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHH
Confidence 44567999999999999999999999999999999999886443322222221 2346888999998753
Q ss_pred ---ccCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 ---LLEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 ---~~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|++|||||.......... ....+++|+.++..+.+++...- .++++++|.....
T Consensus 91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~------------ 158 (272)
T d1g0oa_ 91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA------------ 158 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC------------
T ss_pred HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc------------
Confidence 3469999999998765544332 45688999999999999886532 3788887765221
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCc-------cCCCch-HHHHHH-HHHhCCCe
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMC-------IDDGRV-VSNFVA-QALRKEPL 314 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~-------~~~~~~-~~~~~~-~~~~~~~~ 314 (447)
.+......|+.+|++.+.+++.++.+ +||++..|.||.|-.+... ...... -..... ......++
T Consensus 159 ---~~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 235 (272)
T d1g0oa_ 159 ---KAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPL 235 (272)
T ss_dssp ---SSCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTT
T ss_pred ---ccccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCC
Confidence 12223367999999999999999876 4899999999998653200 000000 011111 11122111
Q ss_pred EEecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCC
Q 013226 315 TVYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 315 ~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
.-+...+|+|.++++++.... +| ++.+.+|
T Consensus 236 ---------gR~~~peevA~~v~fL~s~~s~~itG~~i~vDGG 269 (272)
T d1g0oa_ 236 ---------RRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGG 269 (272)
T ss_dssp ---------CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---------CCCcCHHHHHHHHHHHhCchhcCccCceEeECCC
Confidence 126788999999999997543 45 5555544
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=4.9e-18 Score=160.84 Aligned_cols=191 Identities=15% Similarity=0.053 Sum_probs=132.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc----cc-cc---cccCCCceEEEecccccc-------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK----DN-LI---HHFGNPRFELIRHDVVEP------- 175 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~----~~-~~---~~~~~~~v~~~~~D~~~~------- 175 (447)
.+++||++|||||+++||+++++.|+++|++|++.+|..+... +. +. ..... .......|+.+.
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v 81 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR-RGGKAVANYDSVEAGEKLV 81 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH-TTCEEEEECCCGGGHHHHH
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhh-cccccccccchHHHHHHHH
Confidence 4678999999999999999999999999999999988654221 11 10 00000 111222333221
Q ss_pred -----cccCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccc-cCCCCCCC
Q 013226 176 -----ILLEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEV-YGDPLQHP 240 (447)
Q Consensus 176 -----~~~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v-~g~~~~~~ 240 (447)
.+.++|++|||||+.....+.+. .+..+++|+.|+..+++++ ++.+. +||++||... ++.+
T Consensus 82 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~---- 157 (302)
T d1gz6a_ 82 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNF---- 157 (302)
T ss_dssp HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCT----
T ss_pred HHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCC----
Confidence 23569999999998766554442 4568999999998888875 34454 9999999874 3332
Q ss_pred CCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEe
Q 013226 241 QAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY 317 (447)
Q Consensus 241 ~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (447)
....|+.+|+..+.+.+.++.+ +||++.+|.||.+-.+... .+..
T Consensus 158 -------------~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~-----~~~~-------------- 205 (302)
T d1gz6a_ 158 -------------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTET-----VMPE-------------- 205 (302)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGG-----GSCH--------------
T ss_pred -------------CcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhh-----cCcH--------------
Confidence 2378999999999999999876 4899999999876432211 0000
Q ss_pred cCCCeeEccccHHHHHHHHHHHHcC
Q 013226 318 GDGKQTRSFQFVSDLVEGLIRLMEG 342 (447)
Q Consensus 318 ~~~~~~~~~i~v~D~a~ai~~~l~~ 342 (447)
....++..+|+|.++++++..
T Consensus 206 ----~~~~~~~PedvA~~v~fL~S~ 226 (302)
T d1gz6a_ 206 ----DLVEALKPEYVAPLVLWLCHE 226 (302)
T ss_dssp ----HHHHHSCGGGTHHHHHHHTST
T ss_pred ----hhHhcCCHHHHHHHHHHHcCC
Confidence 111234568999999999864
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.76 E-value=5.4e-18 Score=155.37 Aligned_cols=190 Identities=12% Similarity=0.074 Sum_probs=138.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCe-------EEEEecCCCCCcccccccc--CCCceEEEeccccccc-----------
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDS-------VIVVDNYFTGKKDNLIHHF--GNPRFELIRHDVVEPI----------- 176 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~-------V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~D~~~~~----------- 176 (447)
.||||||+++||++++++|+++|++ |++.+|+.... +++...+ ...++.++.+|++++.
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l-~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADL-EKISLECRAEGALTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHH-HHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHH-HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999987 77888754322 2221111 2346788999998763
Q ss_pred -ccCCCEEEEeccCCCCCCccc----ChHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 -LLEVDQIYHLACPASPVHYKF----NPVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 -~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+.++|++|||||........+ +.+..+++|+.|+..+.+++ ++.+. ++|++||.+.+.
T Consensus 82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------------ 149 (240)
T d2bd0a1 82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK------------ 149 (240)
T ss_dssp HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------
T ss_pred HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC------------
Confidence 346999999999876554443 24568999999988887775 34444 999999987542
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
+......|+.||++.+.+.+.++.+ +|++++.|.||.|-.|...... + ...
T Consensus 150 ----~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~---------------------~-~~~ 203 (240)
T d2bd0a1 150 ----AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD---------------------D-EMQ 203 (240)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC---------------------S-TTG
T ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcC---------------------H-hhH
Confidence 2222378999999999999999865 4899999999998765321100 0 111
Q ss_pred EccccHHHHHHHHHHHHcCCCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGDHV 345 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~~~ 345 (447)
..+...+|+|+++++++.++..
T Consensus 204 ~~~~~PedvA~~v~~l~s~~~~ 225 (240)
T d2bd0a1 204 ALMMMPEDIAAPVVQAYLQPSR 225 (240)
T ss_dssp GGSBCHHHHHHHHHHHHTSCTT
T ss_pred hcCCCHHHHHHHHHHHHcCCcc
Confidence 2356789999999999987653
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.76 E-value=1.4e-18 Score=162.88 Aligned_cols=215 Identities=17% Similarity=0.117 Sum_probs=144.7
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
.++||+++||||+++||+++++.|+++|++|++++|+.+...+ +.... ..++..+.+|+.+.. +..
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~-~~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 79 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAE-LETDH-GDNVLGIVGDVRSLEDQKQAASRCVARFGK 79 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHH-GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHc-CCCeeEEecccccHHHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999999999999986432221 21111 246888899997763 346
Q ss_pred CCEEEEeccCCCCCCc-----cc----ChHHHHHHHHHHHHHHHHHH----HHCCCeEEEEeCccccCCCCCCCCCCCcC
Q 013226 180 VDQIYHLACPASPVHY-----KF----NPVKTIKTNVVGTLNMLGLA----KRVGARFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~-----~~----~~~~~~~~Nv~gt~~ll~aa----~~~g~r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
+|++|||||....... .+ ..++.+++|+.|+..+++++ ++.+.++|++||...+-
T Consensus 80 idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~------------ 147 (276)
T d1bdba_ 80 IDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFY------------ 147 (276)
T ss_dssp CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS------------
T ss_pred cccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhcc------------
Confidence 9999999997543221 11 14568999999988887775 34445888888876331
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhh--CCcEEEEeeccccCCCCccCCCc-----h-HHHHHHHHHhCCCeEEec
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRGL--GIEARIARIFNTYGPRMCIDDGR-----V-VSNFVAQALRKEPLTVYG 318 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--~i~~~ivRp~~i~Gp~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~ 318 (447)
+......|+.+|++.+.+++.++.+. +|++..|.||.|-.+-....... . ...+.......-|+.
T Consensus 148 ----~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~Plg--- 220 (276)
T d1bdba_ 148 ----PNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIG--- 220 (276)
T ss_dssp ----TTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTS---
T ss_pred ----CCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCC---
Confidence 11223679999999999999998764 59999999999876532111000 0 011222222222221
Q ss_pred CCCeeEccccHHHHHHHHHHHHcC-C---CCC-cEEecCC
Q 013226 319 DGKQTRSFQFVSDLVEGLIRLMEG-D---HVG-PFNLGNP 353 (447)
Q Consensus 319 ~~~~~~~~i~v~D~a~ai~~~l~~-~---~~g-~~~i~~~ 353 (447)
-+...+|+|.++++++.. . .+| .+++.+|
T Consensus 221 ------R~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG 254 (276)
T d1bdba_ 221 ------RMPEVEEYTGAYVFFATRGDAAPATGALLNYDGG 254 (276)
T ss_dssp ------SCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSS
T ss_pred ------CCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcC
Confidence 145678999999998752 1 345 6666554
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.2e-17 Score=155.19 Aligned_cols=216 Identities=18% Similarity=0.123 Sum_probs=142.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCC--Cccccc---cc--cCCCceEEEecccccccc----------
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG--KKDNLI---HH--FGNPRFELIRHDVVEPIL---------- 177 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~--~~~~~~---~~--~~~~~v~~~~~D~~~~~~---------- 177 (447)
.|.||||||+++||+++++.|+++|++|+.+.+.... ..+.+. .. ....++..+.+|+++...
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 3568999999999999999999999986655432111 111111 11 124578899999977631
Q ss_pred cCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHH----HHCCC-eEEEEeCccccCCCCCCCCCCCcCCC
Q 013226 178 LEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLA----KRVGA-RFLLTSTSEVYGDPLQHPQAETYWGN 248 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa----~~~g~-r~v~~SS~~v~g~~~~~~~~e~~~~~ 248 (447)
..+|++|||||........+. ....+++|+.|+.++.+++ ++.+. ++|++||....-
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~-------------- 147 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM-------------- 147 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS--------------
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcC--------------
Confidence 359999999998765544432 4558899999998888875 44554 999999987431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCc-----------hHHHHHHHHHhCCCe
Q 013226 249 VNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGR-----------VVSNFVAQALRKEPL 314 (447)
Q Consensus 249 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~-----------~~~~~~~~~~~~~~~ 314 (447)
+......|+.||++.+.+.+.++.+ +|+++++|.||.|-.+-....... ....+.........+
T Consensus 148 --~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (285)
T d1jtva_ 148 --GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQV 225 (285)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHHHhhh
Confidence 2222378999999999999999876 489999999999876532100000 011111111110000
Q ss_pred EEecCCCeeEccccHHHHHHHHHHHHcCCCCCcEEecCC
Q 013226 315 TVYGDGKQTRSFQFVSDLVEGLIRLMEGDHVGPFNLGNP 353 (447)
Q Consensus 315 ~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~~g~~~i~~~ 353 (447)
. .......+|+|++++.+++.+....+++.+.
T Consensus 226 ~-------~~~~~~PeeVA~~v~~~~~~~~p~~ry~~g~ 257 (285)
T d1jtva_ 226 F-------REAAQNPEEVAEVFLTALRAPKPTLRYFTTE 257 (285)
T ss_dssp H-------HHHCBCHHHHHHHHHHHHHCSSCCSEEESCS
T ss_pred h-------cccCCCHHHHHHHHHHHHhCCCCCeEEecHH
Confidence 0 0124568999999999999887666777653
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.73 E-value=3.5e-17 Score=151.14 Aligned_cols=211 Identities=18% Similarity=0.147 Sum_probs=139.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEecccccc-------cccCCCEEEEecc
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEP-------ILLEVDQIYHLAC 188 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~-------~~~~~d~Vih~Ag 188 (447)
++|||||+++||+.+++.|+++|++|++.+|+.+.. +++.... ....++..+.+..+. .+.++|++|||||
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~-~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg 80 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQK-DELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI 80 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSH-HHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 689999999999999999999999999999864432 2221111 112333333322221 2346999999999
Q ss_pred CCCC-CCccc----ChHHHHHHHHHHHHHHHHHH----HHCC-CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChH
Q 013226 189 PASP-VHYKF----NPVKTIKTNVVGTLNMLGLA----KRVG-ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCY 258 (447)
Q Consensus 189 ~~~~-~~~~~----~~~~~~~~Nv~gt~~ll~aa----~~~g-~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y 258 (447)
.... ....+ +....+++|+.++..+++++ ++.+ .++|++||...+. +......|
T Consensus 81 ~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~----------------~~~~~~~Y 144 (252)
T d1zmta1 81 FAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------------PWKELSTY 144 (252)
T ss_dssp CCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS----------------CCTTCHHH
T ss_pred CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc----------------cccccccc
Confidence 7533 22222 24568899999988888775 3334 4999999987542 12223689
Q ss_pred HHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCC----chHHHHHHHHHhCCCeEEecCCCeeEccccHHH
Q 013226 259 DEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDG----RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331 (447)
Q Consensus 259 ~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 331 (447)
+.+|++.+.+++.++.++ ||++.+|.||.|-.+....... ...........+..++. -+...+|
T Consensus 145 ~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~---------R~g~ped 215 (252)
T d1zmta1 145 TSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQ---------RLGTQKE 215 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSS---------SCBCHHH
T ss_pred ccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCC---------CCcCHHH
Confidence 999999999999998764 8999999999997764321100 00122333333332221 1567899
Q ss_pred HHHHHHHHHcCCC---CC-cEEecCC
Q 013226 332 LVEGLIRLMEGDH---VG-PFNLGNP 353 (447)
Q Consensus 332 ~a~ai~~~l~~~~---~g-~~~i~~~ 353 (447)
+|+++++++.+.. .| .+.+.+|
T Consensus 216 vA~~v~fL~S~~s~~iTG~~i~vdGG 241 (252)
T d1zmta1 216 LGELVAFLASGSCDYLTGQVFWLAGG 241 (252)
T ss_dssp HHHHHHHHHTTSCGGGTTCEEEESTT
T ss_pred HHHHHHHHhCchhcCCcCCeEEECCC
Confidence 9999999997653 35 6666554
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=5.8e-17 Score=149.35 Aligned_cols=202 Identities=17% Similarity=0.188 Sum_probs=137.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------------ccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
+++||+++||||+++||++++++|+++|++|++++|+.+...+.. +.+ .........|+.+.. ...
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~-~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA-KKL-GNNCVFAPADVTSEKDVQTALALAKGKFGR 79 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH-HHH-CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH-HHh-CCCccccccccccccccccccccccccccc
Confidence 679999999999999999999999999999999999755433222 222 234555666654431 235
Q ss_pred CCEEEEeccCCCCCCc-------c---cChHHHHHHHHHHHHHHHHHHHHC----------CC-eEEEEeCccccCCCCC
Q 013226 180 VDQIYHLACPASPVHY-------K---FNPVKTIKTNVVGTLNMLGLAKRV----------GA-RFLLTSTSEVYGDPLQ 238 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~-------~---~~~~~~~~~Nv~gt~~ll~aa~~~----------g~-r~v~~SS~~v~g~~~~ 238 (447)
.|.++++++....... + +.....+++|+.++.++.+++... +. +||++||...+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~---- 155 (248)
T d2o23a1 80 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE---- 155 (248)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH----
T ss_pred ccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc----
Confidence 8999988876433221 1 124468899999999999887442 23 799999987542
Q ss_pred CCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeE
Q 013226 239 HPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLT 315 (447)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~ 315 (447)
+......|+.+|++.+.+++.++.++ |+++.+|.||.+..+... .+...+........++.
T Consensus 156 ------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~----~~~~~~~~~~~~~~pl~ 219 (248)
T d2o23a1 156 ------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLT----SLPEKVCNFLASQVPFP 219 (248)
T ss_dssp ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--------------CHHHHTCSSS
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhh----cCCHHHHHHHHhcCCCC
Confidence 22223789999999999999998764 899999999998766431 11122222222222210
Q ss_pred EecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 316 VYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 316 ~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
+ -+...+|+|+++++++++.
T Consensus 220 --~------R~g~peevA~~v~fL~s~~ 239 (248)
T d2o23a1 220 --S------RLGDPAEYAHLVQAIIENP 239 (248)
T ss_dssp --C------SCBCHHHHHHHHHHHHHCT
T ss_pred --C------CCcCHHHHHHHHHHHHhCC
Confidence 1 1567899999999998754
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.72 E-value=5.3e-17 Score=153.47 Aligned_cols=218 Identities=12% Similarity=0.028 Sum_probs=145.5
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc--cCCCceEEEeccccccc------------
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH--FGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~D~~~~~------------ 176 (447)
.+++||+++||||+|+||++++++|+++|++|++++|+.....+...+. .....+..+.+|+.+..
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 100 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV 100 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhh
Confidence 4789999999999999999999999999999999999654322211111 11346778889997763
Q ss_pred ccCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHH----HC-CC-eEEEEeCccccCCCCCCCCCCCcC
Q 013226 177 LLEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAK----RV-GA-RFLLTSTSEVYGDPLQHPQAETYW 246 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~----~~-g~-r~v~~SS~~v~g~~~~~~~~e~~~ 246 (447)
..++|++|||||.......... ....+.+|+.+...+...+. .. +. .++.+||......
T Consensus 101 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~----------- 169 (294)
T d1w6ua_ 101 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG----------- 169 (294)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC-----------
T ss_pred ccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhc-----------
Confidence 2469999999998665444332 34467888888776655432 22 23 6777777653211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCee
Q 013226 247 GNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQT 323 (447)
Q Consensus 247 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (447)
......|+.+|++.+.+++.++.+ +||++.+|.||.|..+........ ...........-++.
T Consensus 170 -----~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~-~~~~~~~~~~~~pl~-------- 235 (294)
T d1w6ua_ 170 -----SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDP-TGTFEKEMIGRIPCG-------- 235 (294)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCT-TSHHHHHHHTTCTTS--------
T ss_pred -----ccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCC-cHHHHHHHhhcCCCC--------
Confidence 112367999999999999999875 489999999999987643211000 112333333333221
Q ss_pred EccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 324 RSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 324 ~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
-+...+|+|+++++++.+. ..| ++.+.+|.
T Consensus 236 -R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG~ 269 (294)
T d1w6ua_ 236 -RLGTVEELANLAAFLCSDYASWINGAVIKFDGGE 269 (294)
T ss_dssp -SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred -CCCCHHHHHHHHHHHhCchhcCCCCcEEEECCCh
Confidence 2567899999999999754 245 66666553
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=1.1e-16 Score=147.39 Aligned_cols=162 Identities=16% Similarity=0.065 Sum_probs=118.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHH---hCCCeEEEEecCCCCCccccccc-cCCCceEEEecccccccc-------------
Q 013226 115 SLRILVTGGAGFVGSHLVDRLM---DRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPIL------------- 177 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~---~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~~------------- 177 (447)
+|+||||||+++||++++++|+ ++|++|++.+|+.+... ++... ....++.++.+|++++..
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 80 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK-ELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK 80 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH-HHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-HHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence 5789999999999999999997 47999999999765433 22211 123578999999977631
Q ss_pred -cCCCEEEEeccCCCCCC-c-ccC---hHHHHHHHHHHHHHHHHHHHH----C-----------C-CeEEEEeCcccc-C
Q 013226 178 -LEVDQIYHLACPASPVH-Y-KFN---PVKTIKTNVVGTLNMLGLAKR----V-----------G-ARFLLTSTSEVY-G 234 (447)
Q Consensus 178 -~~~d~Vih~Ag~~~~~~-~-~~~---~~~~~~~Nv~gt~~ll~aa~~----~-----------g-~r~v~~SS~~v~-g 234 (447)
.++|++|||||...... . +.+ ..+.+++|+.|+..+++++.. . + .++|++||..-. +
T Consensus 81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~ 160 (248)
T d1snya_ 81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ 160 (248)
T ss_dssp GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence 35999999999754432 2 222 445899999999888877532 1 2 389999997522 1
Q ss_pred CCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCC
Q 013226 235 DPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGP 291 (447)
Q Consensus 235 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp 291 (447)
. .+......|+.||++...+.+.++.+ .|+++..|.||.|-.+
T Consensus 161 ~--------------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 161 G--------------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp T--------------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred C--------------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence 1 12222368999999999999998765 4899999999988765
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.71 E-value=2.5e-16 Score=145.95 Aligned_cols=198 Identities=20% Similarity=0.247 Sum_probs=139.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCc--ccccccc--CCCceEEEecccccccc-----------
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKK--DNLIHHF--GNPRFELIRHDVVEPIL----------- 177 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~--~~~~~~~--~~~~v~~~~~D~~~~~~----------- 177 (447)
.+.+||||||+|+||++++++|+++|+ .|+++.|+..... +++...+ ...++.++.+|+++...
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~ 87 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 87 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc
Confidence 446899999999999999999999999 4777777533221 1111111 23578999999977531
Q ss_pred cCCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCcc-ccCCCCCCCCCCCcCCCCCC
Q 013226 178 LEVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSE-VYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~~-v~g~~~~~~~~e~~~~~~~~ 251 (447)
..+|.||||||........+. ....+++|+.|+.++.++++..+. +||++||.. .+|.+.
T Consensus 88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~~~-------------- 153 (259)
T d2fr1a1 88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPG-------------- 153 (259)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTT--------------
T ss_pred ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCCcc--------------
Confidence 248999999998765554432 344789999999999998887766 999999988 434322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhhCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHH
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRGLGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 331 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 331 (447)
...|+.+|...+.+.+++.. .|++++.|.||.+.++++. ...+...+... -...+..++
T Consensus 154 ---~~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~-------~~~~~~~~~~~----------G~~~~~~~~ 212 (259)
T d2fr1a1 154 ---LGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMA-------EGPVADRFRRH----------GVIEMPPET 212 (259)
T ss_dssp ---CTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-------------------CTTT----------TEECBCHHH
T ss_pred ---cHHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCccc-------cchHHHHHHhc----------CCCCCCHHH
Confidence 26799999999999988755 5899999999988876531 11111111111 123578999
Q ss_pred HHHHHHHHHcCCCCC
Q 013226 332 LVEGLIRLMEGDHVG 346 (447)
Q Consensus 332 ~a~ai~~~l~~~~~g 346 (447)
+++++..++......
T Consensus 213 ~~~~l~~~l~~~~~~ 227 (259)
T d2fr1a1 213 ACRALQNALDRAEVC 227 (259)
T ss_dssp HHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhCCCce
Confidence 999999999887654
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=2.2e-16 Score=144.22 Aligned_cols=184 Identities=18% Similarity=0.114 Sum_probs=129.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc------------c--ccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP------------I--LLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~------------~--~~~ 179 (447)
+||+||||||+|+||+++++.|+++|++|+++++........ ......|..+. . ..+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASA---------SVIVKMTDSFTEQADQVTAEVGKLLGDQK 71 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSE---------EEECCCCSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccccc---------cceeecccCcHHHHHHHHHHHHHHhCCCC
Confidence 479999999999999999999999999999998854322111 11122222111 1 124
Q ss_pred CCEEEEeccCCCCCC-ccc----ChHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCC
Q 013226 180 VDQIYHLACPASPVH-YKF----NPVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNP 251 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~-~~~----~~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~ 251 (447)
+|++|||||...... ... ..+..+++|+.++.++.+++.+. +.++|++||.+... +
T Consensus 72 iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~----------------~ 135 (236)
T d1dhra_ 72 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD----------------G 135 (236)
T ss_dssp EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------C
T ss_pred ceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC----------------C
Confidence 899999999543222 122 24457899999999998887653 23899999987542 2
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhh-----hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEcc
Q 013226 252 IGVRSCYDEGKRTAETLTMDYHRG-----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSF 326 (447)
Q Consensus 252 ~~~~~~Y~~sK~~~E~~~~~~~~~-----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (447)
......|+.||++.+.+++.++.+ .|+++..|.||.+..|. ........ ..-.|
T Consensus 136 ~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~------------~~~~~~~~---------~~~~~ 194 (236)
T d1dhra_ 136 TPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM------------NRKSMPEA---------DFSSW 194 (236)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH------------HHHHSTTS---------CGGGS
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCc------------chhhCccc---------hhhcC
Confidence 222378999999999999999865 37999999999987642 11222111 12246
Q ss_pred ccHHHHHHHHHHHHcCC
Q 013226 327 QFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 327 i~v~D~a~ai~~~l~~~ 343 (447)
+..+++|+.+..++...
T Consensus 195 ~~pe~va~~~~~l~s~~ 211 (236)
T d1dhra_ 195 TPLEFLVETFHDWITGN 211 (236)
T ss_dssp EEHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHhCCC
Confidence 78899999999998764
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.2e-16 Score=148.98 Aligned_cols=198 Identities=10% Similarity=0.069 Sum_probs=139.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccc--ccCCCceEEEeccccccc------------cc
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIH--HFGNPRFELIRHDVVEPI------------LL 178 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~D~~~~~------------~~ 178 (447)
++||++|||||+++||++++++|+++|++|++++|+.+...+...+ ......+..+..|..+.. ..
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g 91 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 91 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999999999999999964432221111 112345677777775442 24
Q ss_pred CCCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHH----HCCCeEEEEeCccccCCCCCCCCCCCcCCCCC
Q 013226 179 EVDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAK----RVGARFLLTSTSEVYGDPLQHPQAETYWGNVN 250 (447)
Q Consensus 179 ~~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~----~~g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~ 250 (447)
.+|+++||||........+. ....+++|+.++..+.+++. +.+.++|++||.+.+ .
T Consensus 92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~----------------~ 155 (269)
T d1xu9a_ 92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK----------------V 155 (269)
T ss_dssp SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT----------------S
T ss_pred CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhc----------------C
Confidence 58999999997655443332 34578999999888777653 334589999998743 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhh-----hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEc
Q 013226 251 PIGVRSCYDEGKRTAETLTMDYHRG-----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRS 325 (447)
Q Consensus 251 ~~~~~~~Y~~sK~~~E~~~~~~~~~-----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
+......|+.||++.+.+.+.++.+ .++++..|.||.|-.+ +......+. ....
T Consensus 156 ~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~------------~~~~~~~~~---------~~~~ 214 (269)
T d1xu9a_ 156 AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE------------TAMKAVSGI---------VHMQ 214 (269)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH------------HHHHHSCGG---------GGGG
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc------------HHHHhccCC---------cccc
Confidence 2223478999999999999999865 3689999999887642 222222111 1123
Q ss_pred cccHHHHHHHHHHHHcCCCCCc
Q 013226 326 FQFVSDLVEGLIRLMEGDHVGP 347 (447)
Q Consensus 326 ~i~v~D~a~ai~~~l~~~~~g~ 347 (447)
.+..+++|+.++..+......+
T Consensus 215 ~~~~e~~a~~i~~~~~~~~~~i 236 (269)
T d1xu9a_ 215 AAPKEECALEIIKGGALRQEEV 236 (269)
T ss_dssp CBCHHHHHHHHHHHHHTTCSEE
T ss_pred CCCHHHHHHHHHHHhhcCCCEE
Confidence 4667899999988877655543
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.70 E-value=3e-16 Score=144.62 Aligned_cols=205 Identities=12% Similarity=-0.015 Sum_probs=135.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccccccccCCCceEEEecccccccc--------------
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPIL-------------- 177 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-------------- 177 (447)
++|+||||||+++||.+++++|+++|+ .|++.+|+.+.. +++.+ ....++.++.+|+.+...
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~-~~l~~-~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 79 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA-TELKS-IKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC-HHHHT-CCCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH-HHHHH-hhCCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence 568999999999999999999999996 677778865432 22222 234578999999977621
Q ss_pred cCCCEEEEeccCCCCCC-c-cc---ChHHHHHHHHHHHHHHHHHHHH----C------------CCeEEEEeCccccCCC
Q 013226 178 LEVDQIYHLACPASPVH-Y-KF---NPVKTIKTNVVGTLNMLGLAKR----V------------GARFLLTSTSEVYGDP 236 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~-~-~~---~~~~~~~~Nv~gt~~ll~aa~~----~------------g~r~v~~SS~~v~g~~ 236 (447)
.++|++|||||...+.. . +. ..++.+++|+.|+.++.+++.. . ..+++.+|+...+-..
T Consensus 80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~ 159 (250)
T d1yo6a1 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD 159 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccC
Confidence 23899999999754322 1 22 2456899999999888877532 1 1267777776543211
Q ss_pred CCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCC
Q 013226 237 LQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEP 313 (447)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~ 313 (447)
... ..+..+...|+.||++...+++.++.+ .|+++.+|.||.|-.+-. +
T Consensus 160 ~~~---------~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~-----------------~-- 211 (250)
T d1yo6a1 160 NTS---------GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG-----------------G-- 211 (250)
T ss_dssp CCS---------TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------
T ss_pred Ccc---------cccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCC-----------------C--
Confidence 100 012223457999999999999999865 489999999988754310 0
Q ss_pred eEEecCCCeeEccccHHHHHHHHHHHHcCC---CCCcEEecCCCccC
Q 013226 314 LTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVGPFNLGNPGEFT 357 (447)
Q Consensus 314 ~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g~~~i~~~~~~s 357 (447)
. ...+..++.++.++..+.+. ..|.|..-++.++.
T Consensus 212 -----~----~~~~~~e~~a~~~~~~~~~~~~~~sG~f~~~~g~p~~ 249 (250)
T d1yo6a1 212 -----K----NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPYE 249 (250)
T ss_dssp ----------------HHHHHHHHHHHTTCCGGGTTCEEETTEEECC
T ss_pred -----C----CCCCCHHHHHHHHHHHHhcCCCCCCeEEECCCCeeCC
Confidence 0 01245688888888888754 34667665555554
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=1.1e-16 Score=148.51 Aligned_cols=207 Identities=12% Similarity=0.030 Sum_probs=140.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHh---CCCeEEEEecCCCCCcc---ccccccCCCceEEEecccccccc--------
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMD---RGDSVIVVDNYFTGKKD---NLIHHFGNPRFELIRHDVVEPIL-------- 177 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~---~G~~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~~-------- 177 (447)
.++||+++||||+++||++++++|++ +|++|++++|+.+...+ ++.......++.++.+|+.++..
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~ 82 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 57899999999999999999999986 79999999996443221 11112234578899999987521
Q ss_pred --------cCCCEEEEeccCCCCCC---ccc----ChHHHHHHHHHHHHHHHHHHHHC----C---CeEEEEeCccccCC
Q 013226 178 --------LEVDQIYHLACPASPVH---YKF----NPVKTIKTNVVGTLNMLGLAKRV----G---ARFLLTSTSEVYGD 235 (447)
Q Consensus 178 --------~~~d~Vih~Ag~~~~~~---~~~----~~~~~~~~Nv~gt~~ll~aa~~~----g---~r~v~~SS~~v~g~ 235 (447)
..+|++|||||...+.. ... ....++++|+.++..+.+++.+. + .++|++||...+
T Consensus 83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~-- 160 (259)
T d1oaaa_ 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL-- 160 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT--
T ss_pred HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccccc--
Confidence 23689999999754322 222 24468999999999999987553 2 279999998743
Q ss_pred CCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh-hCCcEEEEeeccccCCCCccCC-CchHHHHHHHHHhCCC
Q 013226 236 PLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG-LGIEARIARIFNTYGPRMCIDD-GRVVSNFVAQALRKEP 313 (447)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~~i~~~ivRp~~i~Gp~~~~~~-~~~~~~~~~~~~~~~~ 313 (447)
.+......|+.||++.+.+++.++.+ .|+++.+|.||.|..+...... ...............+
T Consensus 161 --------------~~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~ 226 (259)
T d1oaaa_ 161 --------------QPYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKS 226 (259)
T ss_dssp --------------SCCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred --------------CCCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcCC
Confidence 22223478999999999999999865 4899999999998764210000 0000011111110000
Q ss_pred eEEecCCCeeEccccHHHHHHHHHHHHcCC
Q 013226 314 LTVYGDGKQTRSFQFVSDLVEGLIRLMEGD 343 (447)
Q Consensus 314 ~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~ 343 (447)
. .-+...+|+|++++.++++.
T Consensus 227 -----~----~r~~~p~evA~~i~~ll~~~ 247 (259)
T d1oaaa_ 227 -----D----GALVDCGTSAQKLLGLLQKD 247 (259)
T ss_dssp -----T----TCSBCHHHHHHHHHHHHHHC
T ss_pred -----C----CCCCCHHHHHHHHHHHhhhc
Confidence 0 12467899999999998753
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.69 E-value=1.1e-16 Score=146.17 Aligned_cols=182 Identities=19% Similarity=0.158 Sum_probs=125.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc--------------cccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP--------------ILLEV 180 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~--------------~~~~~ 180 (447)
..+||||||+|+||++++++|+++|++|++++|+....... ......|+... ...++
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 72 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADS---------NILVDGNKNWTEQEQSILEQTASSLQGSQV 72 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSE---------EEECCTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcccc---------cceeccccCchhHHHHHHHHHHHHhcCCCe
Confidence 34689999999999999999999999999999965432211 11122222111 12458
Q ss_pred CEEEEeccCCCCC-CcccC----hHHHHHHHHHHHHHHHHHHHHC---CCeEEEEeCccccCCCCCCCCCCCcCCCCCCC
Q 013226 181 DQIYHLACPASPV-HYKFN----PVKTIKTNVVGTLNMLGLAKRV---GARFLLTSTSEVYGDPLQHPQAETYWGNVNPI 252 (447)
Q Consensus 181 d~Vih~Ag~~~~~-~~~~~----~~~~~~~Nv~gt~~ll~aa~~~---g~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~ 252 (447)
|+||||||..... ....+ .+.++++|+.++..+.+++... +.++|++||...+. +.
T Consensus 73 D~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~----------------~~ 136 (235)
T d1ooea_ 73 DGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG----------------PT 136 (235)
T ss_dssp EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------CC
T ss_pred eEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC----------------Cc
Confidence 9999999964332 12222 3457899999999998887664 23899999987442 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHhh-----hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccc
Q 013226 253 GVRSCYDEGKRTAETLTMDYHRG-----LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQ 327 (447)
Q Consensus 253 ~~~~~Y~~sK~~~E~~~~~~~~~-----~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 327 (447)
.....|+.+|++.+.+++.++.+ .++++..|.||.+-.| +........ ....++
T Consensus 137 ~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~------------~~~~~~~~~---------~~~~~~ 195 (235)
T d1ooea_ 137 PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP------------MNRKWMPNA---------DHSSWT 195 (235)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH------------HHHHHSTTC---------CGGGCB
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc------------chhhhCcCC---------ccccCC
Confidence 23478999999999999999865 3778999999887643 222222221 123578
Q ss_pred cHHHHHHHHHHHHcC
Q 013226 328 FVSDLVEGLIRLMEG 342 (447)
Q Consensus 328 ~v~D~a~ai~~~l~~ 342 (447)
..+|+++.++.++..
T Consensus 196 ~~~~va~~~~~~l~~ 210 (235)
T d1ooea_ 196 PLSFISEHLLKWTTE 210 (235)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcC
Confidence 899999998866544
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=3.7e-16 Score=144.65 Aligned_cols=216 Identities=13% Similarity=-0.001 Sum_probs=143.3
Q ss_pred cCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc-CCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF-GNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~D~~~~~------------ 176 (447)
.++||++|||||+| +||+++++.|+++|++|++.+|+.. ..+...+.. ..........|..+..
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK-LKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV 80 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhc
Confidence 36899999999999 8999999999999999999998633 222221111 1224455555654432
Q ss_pred ccCCCEEEEeccCCCCCCcccC---------hHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCccccCCCCCCCCCCC
Q 013226 177 LLEVDQIYHLACPASPVHYKFN---------PVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~~---------~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
....|++||+|+.......... ....+.+|+.+...+.+++...- ..+|++||....
T Consensus 81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~----------- 149 (258)
T d1qsga_ 81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE----------- 149 (258)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------
T ss_pred ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc-----------
Confidence 2458999999987544332211 22356777777888887775532 368888887632
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh---CCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL---GIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
.+......|+.+|++.+.+++.++.+. ||++.+|+||.|..+...... .............++.
T Consensus 150 -----~~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~--~~~~~~~~~~~~~pl~------ 216 (258)
T d1qsga_ 150 -----RAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIK--DFRKMLAHCEAVTPIR------ 216 (258)
T ss_dssp -----SBCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGST--THHHHHHHHHHHSTTS------
T ss_pred -----cCCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccc--hhhhHHHHHHhCCCCC------
Confidence 122233789999999999999998764 799999999999877543211 1122333333322221
Q ss_pred eeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
-+...+|+|+++++++.+. -.| ++.+.+|-.
T Consensus 217 ---R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~~ 251 (258)
T d1qsga_ 217 ---RTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFS 251 (258)
T ss_dssp ---SCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred ---CCcCHHHHHHHHHHHhCchhcCccCceEEECcCHH
Confidence 2567899999999999754 345 566655533
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=4.2e-16 Score=145.77 Aligned_cols=177 Identities=18% Similarity=0.034 Sum_probs=121.3
Q ss_pred CCeE-EEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------ccC
Q 013226 115 SLRI-LVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------LLE 179 (447)
Q Consensus 115 ~~~i-lVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------~~~ 179 (447)
||+| |||||+++||.+++++|+++ |++|++.+|+.+..++...+. ....++.++.+|+.+.. ..+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 5665 89999999999999999986 899999999754322211111 12346888999997763 246
Q ss_pred CCEEEEeccCCCCCCcccC----hHHHHHHHHHHHHHHHHHHHHCC---CeEEEEeCcccc-CCCCCCC----------C
Q 013226 180 VDQIYHLACPASPVHYKFN----PVKTIKTNVVGTLNMLGLAKRVG---ARFLLTSTSEVY-GDPLQHP----------Q 241 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~aa~~~g---~r~v~~SS~~v~-g~~~~~~----------~ 241 (447)
+|++|||||+......... ....+++|+.|+..+++++...- .++|++||.... +.+...+ .
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~~ 161 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETI 161 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSC
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhccccc
Confidence 9999999998765444332 34578999999999999886532 389999997632 1111100 0
Q ss_pred CCC--------------cCCCCCCCCCCChHHHHHHHHHHHHHHHHhhh-------CCcEEEEeeccccCC
Q 013226 242 AET--------------YWGNVNPIGVRSCYDEGKRTAETLTMDYHRGL-------GIEARIARIFNTYGP 291 (447)
Q Consensus 242 ~e~--------------~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------~i~~~ivRp~~i~Gp 291 (447)
.+. ......+..+...|+.||+....+.+.++++. ++++..+.||.|-.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~ 232 (275)
T d1wmaa1 162 TEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTD 232 (275)
T ss_dssp CHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCST
T ss_pred chhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCC
Confidence 000 00001222344789999999998887766543 899999999998754
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.61 E-value=1e-14 Score=136.60 Aligned_cols=211 Identities=15% Similarity=0.052 Sum_probs=135.6
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCcccccccc---CCCceEE-----------------Eecccccc-
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHF---GNPRFEL-----------------IRHDVVEP- 175 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~-----------------~~~D~~~~- 175 (447)
.++||||+++||++++++|+++|++|++.+++.....+.+...+ ....... ...|+++.
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~~ 83 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFT 83 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCHH
Confidence 58999999999999999999999999998876433222221111 1112222 33444433
Q ss_pred -----------cccCCCEEEEeccCCCCCCcccC------------------hHHHHHHHHHHHHHHHHHHHHC------
Q 013226 176 -----------ILLEVDQIYHLACPASPVHYKFN------------------PVKTIKTNVVGTLNMLGLAKRV------ 220 (447)
Q Consensus 176 -----------~~~~~d~Vih~Ag~~~~~~~~~~------------------~~~~~~~Nv~gt~~ll~aa~~~------ 220 (447)
.+.++|++|||||...+...... ....+.+|+.++..+.+++.+.
T Consensus 84 ~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 163 (284)
T d1e7wa_ 84 RCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPA 163 (284)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhHH
Confidence 13469999999998654332221 1125788999988888875431
Q ss_pred ---C-C-eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCC
Q 013226 221 ---G-A-RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPR 292 (447)
Q Consensus 221 ---g-~-r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~ 292 (447)
+ . ++|+++|.... .+......|+.+|++.+.+++.++.+ +|+++.+|.||.+-...
T Consensus 164 ~~~~~~~~ii~~~s~~~~----------------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~ 227 (284)
T d1e7wa_ 164 KHRGTNYSIINMVDAMTN----------------QPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD 227 (284)
T ss_dssp GGSCSCEEEEEECCTTTT----------------SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG
T ss_pred HhcCCCCccccccccccc----------------CCccceeeeccccccchhhhHHHHHHhCCccccccccccccccccc
Confidence 2 2 67777776532 12223478999999999999999875 48999999998643221
Q ss_pred CccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCccC
Q 013226 293 MCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGEFT 357 (447)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~~s 357 (447)
..............++. + -+...+|+|+++++++.+. ..| ++.+.+|-.++
T Consensus 228 ------~~~~~~~~~~~~~~pl~--~------R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~sl~ 282 (284)
T d1e7wa_ 228 ------DMPPAVWEGHRSKVPLY--Q------RDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYSLT 282 (284)
T ss_dssp ------GSCHHHHHHHHTTCTTT--T------SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred ------cCCHHHHHHHHhcCCCC--C------CCCCHHHHHHHHHHHhCchhcCccCCeEEECcChhcc
Confidence 11234444444433221 1 2567899999999999754 245 66666654443
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=2.8e-15 Score=137.02 Aligned_cols=200 Identities=19% Similarity=0.150 Sum_probs=133.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----------ccCCCEE
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----------LLEVDQI 183 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----------~~~~d~V 183 (447)
.|++|||||+++||++++++|+++|++|++++|+.+.. +......|+.... ....+.+
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 69 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE-----------DLIYVEGDVTREEDVRRAVARAQEEAPLFAV 69 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS-----------SSEEEECCTTCHHHHHHHHHHHHHHSCEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc-----------cceEeeccccchhhhHHHHHhhhccccccch
Confidence 37899999999999999999999999999999864321 2344556654431 1234566
Q ss_pred EEeccCCCCCCc-----c---cChHHHHHHHHHHHHHHHHHHHHC----------CC-eEEEEeCccccCCCCCCCCCCC
Q 013226 184 YHLACPASPVHY-----K---FNPVKTIKTNVVGTLNMLGLAKRV----------GA-RFLLTSTSEVYGDPLQHPQAET 244 (447)
Q Consensus 184 ih~Ag~~~~~~~-----~---~~~~~~~~~Nv~gt~~ll~aa~~~----------g~-r~v~~SS~~v~g~~~~~~~~e~ 244 (447)
+++++....... . ......+++|+.+...+++.+... +. ++|++||...+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~---------- 139 (241)
T d1uaya_ 70 VSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE---------- 139 (241)
T ss_dssp EECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH----------
T ss_pred hhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc----------
Confidence 666654322111 1 124457899999988887765332 23 899999987432
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCC
Q 013226 245 YWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGK 321 (447)
Q Consensus 245 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (447)
+......|+.+|++.+.+++.++.+ +||++.+|.||.|..+..... ............++. +
T Consensus 140 ------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~----~~~~~~~~~~~~~~~--~--- 204 (241)
T d1uaya_ 140 ------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL----PEKAKASLAAQVPFP--P--- 204 (241)
T ss_dssp ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS----CHHHHHHHHTTCCSS--C---
T ss_pred ------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchh----hhhHHHHHHhcCCCC--C---
Confidence 1122378999999999999999875 489999999999876532111 122223333332221 1
Q ss_pred eeEccccHHHHHHHHHHHHcCCC-CC-cEEecCC
Q 013226 322 QTRSFQFVSDLVEGLIRLMEGDH-VG-PFNLGNP 353 (447)
Q Consensus 322 ~~~~~i~v~D~a~ai~~~l~~~~-~g-~~~i~~~ 353 (447)
-+...+|+|++++++++... +| ++.+.+|
T Consensus 205 ---R~g~pedvA~~v~fL~s~~~iTG~~i~VDGG 235 (241)
T d1uaya_ 205 ---RLGRPEEYAALVLHILENPMLNGEVVRLDGA 235 (241)
T ss_dssp ---SCCCHHHHHHHHHHHHHCTTCCSCEEEESTT
T ss_pred ---CCcCHHHHHHHHHHHHhCCCCCCCEEEECCc
Confidence 24578999999999998642 35 5666554
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.61 E-value=8.1e-15 Score=136.68 Aligned_cols=215 Identities=12% Similarity=-0.041 Sum_probs=133.3
Q ss_pred cCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCCCCCccccccc-cCCCceEEEeccccccc------------
Q 013226 112 QRKSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH-FGNPRFELIRHDVVEPI------------ 176 (447)
Q Consensus 112 ~~~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~D~~~~~------------ 176 (447)
.++||++|||||+| +||.++++.|+++|++|++++|+.. ..+...+. .......+...|+++..
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 80 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH
Confidence 36899999999887 8999999999999999999998632 11111111 11234566777776552
Q ss_pred ccCCCEEEEeccCCCCCCccc----ChHHHHHHH----HHHHHHHHHHHHHCC--C-eEEEEeCccccCCCCCCCCCCCc
Q 013226 177 LLEVDQIYHLACPASPVHYKF----NPVKTIKTN----VVGTLNMLGLAKRVG--A-RFLLTSTSEVYGDPLQHPQAETY 245 (447)
Q Consensus 177 ~~~~d~Vih~Ag~~~~~~~~~----~~~~~~~~N----v~gt~~ll~aa~~~g--~-r~v~~SS~~v~g~~~~~~~~e~~ 245 (447)
+..+|++|||+|......... .....+..+ ......+.....+.. . .++.+|+.+...
T Consensus 81 ~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~----------- 149 (274)
T d2pd4a1 81 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK----------- 149 (274)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred cCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc-----------
Confidence 346999999999754322211 222222222 223333444333332 2 466666655432
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCe
Q 013226 246 WGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQ 322 (447)
Q Consensus 246 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (447)
+......|+.+|.+.+.+++.++.+ .|+++.+|.||.+..+........ ...........++
T Consensus 150 -----~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~--~~~~~~~~~~~p~-------- 214 (274)
T d2pd4a1 150 -----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADF--RMILKWNEINAPL-------- 214 (274)
T ss_dssp -----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTH--HHHHHHHHHHSTT--------
T ss_pred -----ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCch--HHHHHHHhhhhhc--------
Confidence 2222367999999999999998765 489999999999887643211111 1222222222221
Q ss_pred eEccccHHHHHHHHHHHHcCC---CCC-cEEecCCC
Q 013226 323 TRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPG 354 (447)
Q Consensus 323 ~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~ 354 (447)
.-+...+|+|.++++++.+. .+| ++.+.+|.
T Consensus 215 -~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~ 249 (274)
T d2pd4a1 215 -RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGY 249 (274)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -cCCcCHHHHHHHHHHHhChhhCCCcCceEEECCCh
Confidence 13578899999999999764 245 66666554
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.59 E-value=5.8e-14 Score=132.30 Aligned_cols=217 Identities=9% Similarity=-0.015 Sum_probs=138.1
Q ss_pred ccCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEecCCCC------------CccccccccC---CCceEEEecccc
Q 013226 111 LQRKSLRILVTGGAG--FVGSHLVDRLMDRGDSVIVVDNYFTG------------KKDNLIHHFG---NPRFELIRHDVV 173 (447)
Q Consensus 111 ~~~~~~~ilVtGasG--~IG~~l~~~L~~~G~~V~~l~r~~~~------------~~~~~~~~~~---~~~v~~~~~D~~ 173 (447)
.+++||++|||||+| +||++++++|+++|++|++.+|.... .......... ..++..++.++.
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence 568999999999887 99999999999999999998874210 0000000000 011222222211
Q ss_pred c------------------------------ccccCCCEEEEeccCCCC--CCccc----ChHHHHHHHHHHHHHHHHHH
Q 013226 174 E------------------------------PILLEVDQIYHLACPASP--VHYKF----NPVKTIKTNVVGTLNMLGLA 217 (447)
Q Consensus 174 ~------------------------------~~~~~~d~Vih~Ag~~~~--~~~~~----~~~~~~~~Nv~gt~~ll~aa 217 (447)
+ ..+.++|++|||||.... ..+.+ +....+++|+.++..+++++
T Consensus 84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~ 163 (297)
T d1d7oa_ 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHH
Confidence 1 113468999999996432 12221 24568899999999999988
Q ss_pred HHCCC---eEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHh----hhCCcEEEEeeccccC
Q 013226 218 KRVGA---RFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHR----GLGIEARIARIFNTYG 290 (447)
Q Consensus 218 ~~~g~---r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~~~i~~~ivRp~~i~G 290 (447)
..... +++.+++.+.... .......|..+|...+.+++.++. ++|+++..|.||.+..
T Consensus 164 ~~~~~~~g~~~~~~~~~~~~~---------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T 228 (297)
T d1d7oa_ 164 LPIMNPGGASISLTYIASERI---------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS 228 (297)
T ss_dssp GGGEEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred HHHhhcCCcceeeeehhhccc---------------ccccccceecccccccccccccchhccccceEEecccccccccc
Confidence 66432 4666666553211 111236799999999988877654 3589999999999987
Q ss_pred CCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCC
Q 013226 291 PRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 291 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~ 353 (447)
+... .......+.......-|+. -+...+|+|.++++++... .+| ++.+.+|
T Consensus 229 ~~~~--~~~~~~~~~~~~~~~~Plg---------R~~~peevA~~v~fL~S~~a~~itGq~i~vDGG 284 (297)
T d1d7oa_ 229 RAAK--AIGFIDTMIEYSYNNAPIQ---------KTLTADEVGNAAAFLVSPLASAITGATIYVDNG 284 (297)
T ss_dssp CCSS--CCSHHHHHHHHHHHHSSSC---------CCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred hhhh--hccCCHHHHHHHHhCCCCC---------CCCCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence 7542 1223344554444433322 2567899999999999653 345 5555544
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.58 E-value=3e-14 Score=131.99 Aligned_cols=209 Identities=18% Similarity=0.130 Sum_probs=133.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc---cCCCceEEEecccccc----------------cc
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH---FGNPRFELIRHDVVEP----------------IL 177 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~D~~~~----------------~~ 177 (447)
++|||||+++||++++++|+++|++|++++|+.+...+.+... ...........|..+. .+
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAF 82 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999755432222221 1223444444433221 23
Q ss_pred cCCCEEEEeccCCCCCCccc---------------ChHHHHHHHHHHHHHHHHHHHHC---------CC-eEEEEeCccc
Q 013226 178 LEVDQIYHLACPASPVHYKF---------------NPVKTIKTNVVGTLNMLGLAKRV---------GA-RFLLTSTSEV 232 (447)
Q Consensus 178 ~~~d~Vih~Ag~~~~~~~~~---------------~~~~~~~~Nv~gt~~ll~aa~~~---------g~-r~v~~SS~~v 232 (447)
.++|++|||||+..+..... .....+..|+.+........... .. .++.+|+...
T Consensus 83 g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (266)
T d1mxha_ 83 GRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMT 162 (266)
T ss_dssp SCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGGG
T ss_pred CCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhccc
Confidence 46999999999765433211 12234556666655555544332 12 5666666553
Q ss_pred cCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHH
Q 013226 233 YGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQAL 309 (447)
Q Consensus 233 ~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~ 309 (447)
.. +......|+.||+..+.+++.++.+ +|+++..|.||.+..+.... ........
T Consensus 163 ~~----------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~------~~~~~~~~ 220 (266)
T d1mxha_ 163 DL----------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP------QETQEEYR 220 (266)
T ss_dssp GS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC------HHHHHHHH
T ss_pred cc----------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC------HHHHHHHH
Confidence 21 2223478999999999999999875 48999999999987664211 33334444
Q ss_pred hCCCeEEecCCCeeEccccHHHHHHHHHHHHcCC---CCC-cEEecCCCc
Q 013226 310 RKEPLTVYGDGKQTRSFQFVSDLVEGLIRLMEGD---HVG-PFNLGNPGE 355 (447)
Q Consensus 310 ~~~~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~---~~g-~~~i~~~~~ 355 (447)
..-++ + +-+...+|+|.++++++.+. ..| ++.+.+|-.
T Consensus 221 ~~~pl---~-----r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~~ 262 (266)
T d1mxha_ 221 RKVPL---G-----QSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLI 262 (266)
T ss_dssp TTCTT---T-----SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hcCCC---C-----CCCCCHHHHHHHHHHHhCchhCCccCCeEEECccHh
Confidence 43222 1 12357899999999999765 346 667665543
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.55 E-value=2.3e-14 Score=133.02 Aligned_cols=219 Identities=11% Similarity=0.061 Sum_probs=136.9
Q ss_pred cCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-------------
Q 013226 112 QRKSLRILVTGGA--GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------------- 176 (447)
Q Consensus 112 ~~~~~~ilVtGas--G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------------- 176 (447)
.++||+++||||+ .+||.+++++|+++|++|++.+|+.....+.+.+.. ..+...+.+|+.++.
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~~~~ 81 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAI 81 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHc-CCceeeEeeecccccccccccchhhhcc
Confidence 4689999999964 579999999999999999999986543323333332 345677888887652
Q ss_pred --ccCCCEEEEeccCCCCCC-----ccc-C---hHHHHHHHHHHHHHHHHHHHHCCC--eEEEEeCccccCCCCCCCCCC
Q 013226 177 --LLEVDQIYHLACPASPVH-----YKF-N---PVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQAE 243 (447)
Q Consensus 177 --~~~~d~Vih~Ag~~~~~~-----~~~-~---~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~SS~~v~g~~~~~~~~e 243 (447)
...+|+++||||...... +.+ . ....+.+|+.........+..... .+++++|.....
T Consensus 82 ~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~--------- 152 (268)
T d2h7ma1 82 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR--------- 152 (268)
T ss_dssp CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS---------
T ss_pred ccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc---------
Confidence 134799999999653211 111 1 223556666677666666655432 344444443221
Q ss_pred CcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCc--------cCCCchHHHHHHHHHhCC
Q 013226 244 TYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMC--------IDDGRVVSNFVAQALRKE 312 (447)
Q Consensus 244 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~--------~~~~~~~~~~~~~~~~~~ 312 (447)
+......|+.+|++.+.+++.++.+ .|+++..|.||.+-.+... .........+........
T Consensus 153 -------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (268)
T d2h7ma1 153 -------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRA 225 (268)
T ss_dssp -------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHC
T ss_pred -------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcC
Confidence 1112378999999999999999875 4899999999987653210 000011122222222222
Q ss_pred CeEEecCCCeeEccccHHHHHHHHHHHHcCCC---CC-cEEecCCCc
Q 013226 313 PLTVYGDGKQTRSFQFVSDLVEGLIRLMEGDH---VG-PFNLGNPGE 355 (447)
Q Consensus 313 ~~~~~~~~~~~~~~i~v~D~a~ai~~~l~~~~---~g-~~~i~~~~~ 355 (447)
++. +.+...+|+|+++++++.+.. +| ++.+.+|..
T Consensus 226 pl~--------rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~~ 264 (268)
T d2h7ma1 226 PIG--------WNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAH 264 (268)
T ss_dssp TTC--------CCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGG
T ss_pred CCC--------CCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCcc
Confidence 221 224567999999999997543 45 566665543
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.48 E-value=7.4e-13 Score=126.49 Aligned_cols=161 Identities=10% Similarity=0.024 Sum_probs=107.3
Q ss_pred CCeEEEEc--CCChhHHHHHHHHHhCCCeEEEEecCCCCC-----------cccccc-cc-CCCceEEEeccc-------
Q 013226 115 SLRILVTG--GAGFVGSHLVDRLMDRGDSVIVVDNYFTGK-----------KDNLIH-HF-GNPRFELIRHDV------- 172 (447)
Q Consensus 115 ~~~ilVtG--asG~IG~~l~~~L~~~G~~V~~l~r~~~~~-----------~~~~~~-~~-~~~~v~~~~~D~------- 172 (447)
+|.+|||| ++.+||+.+++.|+++|++|++.++..... ..+... .. ..........|+
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence 57899999 567999999999999999999987643210 000000 00 001122222222
Q ss_pred -------------ccc------------cccCCCEEEEeccCCCCC--Cccc----ChHHHHHHHHHHHHHHHHHHHHCC
Q 013226 173 -------------VEP------------ILLEVDQIYHLACPASPV--HYKF----NPVKTIKTNVVGTLNMLGLAKRVG 221 (447)
Q Consensus 173 -------------~~~------------~~~~~d~Vih~Ag~~~~~--~~~~----~~~~~~~~Nv~gt~~ll~aa~~~g 221 (447)
.+. .+.++|++|||||..... .+.+ +....+++|+.++..+++++.+.-
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m 161 (329)
T d1uh5a_ 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhc
Confidence 111 234699999999965432 2222 355688999999999999887642
Q ss_pred ---CeEEEEeCccccCCCCCCCCCCCcCCCCCCCCCCChHHHHHHHHHHHHHHHHhh----hCCcEEEEeeccccC
Q 013226 222 ---ARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG----LGIEARIARIFNTYG 290 (447)
Q Consensus 222 ---~r~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~~i~~~ivRp~~i~G 290 (447)
.++|.+||.+.... .| .....|+.+|+..+.+++.++.+ +||++..|.||.|-.
T Consensus 162 ~~~GsIv~iss~~~~~~--------------~p-~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 162 KPQSSIISLTYHASQKV--------------VP-GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS 222 (329)
T ss_dssp EEEEEEEEEECGGGTSC--------------CT-TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred ccccccccceeehhccc--------------cc-ccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccc
Confidence 38999998764321 01 11356999999999999998754 589999999998754
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.47 E-value=4.8e-13 Score=123.08 Aligned_cols=223 Identities=12% Similarity=0.010 Sum_probs=122.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 194 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~ 194 (447)
+|+|+||||+++||++++++|+++|++|++++|+......++... ........|........+|+++||||....
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~id~lv~~Ag~~~~-- 75 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTA---EGRKQAIADVLAKCSKGMDGLVLCAGLGPQ-- 75 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSH---HHHHHHHHHHHTTCTTCCSEEEECCCCCTT--
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHhcCH---HHHHHHHHHHHHHhCCCCcEEEEcCCCCCc--
Confidence 578999999999999999999999999999998643322211110 011111122333334569999999986432
Q ss_pred cccChHHHHHHHHHHHHHHHHHHH----HCCC-eEEEEeCcccc-CCCCCCCCCCC----------cC-CCCCCCCCCCh
Q 013226 195 YKFNPVKTIKTNVVGTLNMLGLAK----RVGA-RFLLTSTSEVY-GDPLQHPQAET----------YW-GNVNPIGVRSC 257 (447)
Q Consensus 195 ~~~~~~~~~~~Nv~gt~~ll~aa~----~~g~-r~v~~SS~~v~-g~~~~~~~~e~----------~~-~~~~~~~~~~~ 257 (447)
.........+|..+...+.+... +... ....+++.... -.....+.... .. ...........
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~~~~~~~~~~~~ 154 (257)
T d1fjha_ 76 -TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLA 154 (257)
T ss_dssp -CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeehhccCCCcchHH
Confidence 23455667788888777766543 2333 45555554321 11001000000 00 00001111246
Q ss_pred HHHHHHHHHHHHHHHHhh---hCCcEEEEeeccccCCCCccCCCchHHHHHHHHHhCCCeEEecCCCeeEccccHHHHHH
Q 013226 258 YDEGKRTAETLTMDYHRG---LGIEARIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVE 334 (447)
Q Consensus 258 Y~~sK~~~E~~~~~~~~~---~~i~~~ivRp~~i~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 334 (447)
|+.+|++.+.+++.++.+ +||++..|.||.+-.|....... -..+.....+.. . ...-+...+|+|+
T Consensus 155 Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~--~~~~~~~~~~~~-~-------PlgR~g~p~eva~ 224 (257)
T d1fjha_ 155 YAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ--DPRYGESIAKFV-P-------PMGRRAEPSEMAS 224 (257)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------CC-C-------STTSCCCTHHHHH
T ss_pred HHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcC--CHHHHHHHHhcC-C-------CCCCCcCHHHHHH
Confidence 999999999999999865 48999999999987654210000 000111111110 0 0112567899999
Q ss_pred HHHHHHcCC---CCC-cEEecCC
Q 013226 335 GLIRLMEGD---HVG-PFNLGNP 353 (447)
Q Consensus 335 ai~~~l~~~---~~g-~~~i~~~ 353 (447)
++++++... .+| ++.+.+|
T Consensus 225 ~v~fL~S~~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 225 VIAFLMSPAASYVHGAQIVIDGG 247 (257)
T ss_dssp HHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHhCchhCCccCceEEeCCC
Confidence 999999754 346 5555443
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.99 E-value=1.9e-11 Score=107.13 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=57.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccc-----ccccCCCEEEE
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE-----PILLEVDQIYH 185 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-----~~~~~~d~Vih 185 (447)
.++++|+|+||||+|+||+.+++.|+++|++|++++|+.+...+..........+.....|+.+ +.+.++|+|||
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin 98 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT 98 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence 4679999999999999999999999999999999999754322111111111233444555543 35678999999
Q ss_pred eccCC
Q 013226 186 LACPA 190 (447)
Q Consensus 186 ~Ag~~ 190 (447)
|||..
T Consensus 99 ~Ag~g 103 (191)
T d1luaa1 99 AGAIG 103 (191)
T ss_dssp CCCTT
T ss_pred cCccc
Confidence 99863
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.00 E-value=3e-05 Score=63.32 Aligned_cols=105 Identities=12% Similarity=0.123 Sum_probs=72.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCC-----cccccccc--CCCceEE-EecccccccccCCCEEEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGK-----KDNLIHHF--GNPRFEL-IRHDVVEPILLEVDQIYH 185 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~-----~~~~~~~~--~~~~v~~-~~~D~~~~~~~~~d~Vih 185 (447)
|||.|+||+|.+|..++..|+.+|. ++.++|+..... ..++.+.. ....+.. +..+-....+.++|+||-
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 6899999999999999999999984 899998853211 11122211 1122222 222223347789999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA 222 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~ 222 (447)
+||.. .....+..+.++.|..-.+.+++...+++.
T Consensus 81 tAG~~--~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~ 115 (145)
T d1hyea1 81 TSGVP--RKEGMSRMDLAKTNAKIVGKYAKKIAEICD 115 (145)
T ss_dssp CCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ecccc--cCCCCChhhhhhhhHHHHHHHHHHHhccCC
Confidence 99953 333345667899999999999999988765
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=2.1e-05 Score=64.25 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=73.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHh-C--CCeEEEEecCCCCCcc---ccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMD-R--GDSVIVVDNYFTGKKD---NLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~-~--G~~V~~l~r~~~~~~~---~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
|+|.|+|++|.+|.+++..|.. . +.++.++|..+ .... ++.+.........+..+-...++.+.|+||.+||.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence 6899999999999999988754 3 46888988642 2211 11121112223333333233467889999999996
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
.. ....+..+.+..|..-...+.+.+.+++. .++.+|
T Consensus 80 ~~--k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 80 RR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp CC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred cC--CCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 42 33345667889999999999999988875 444444
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.97 E-value=1.7e-05 Score=64.81 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=74.6
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCc-cccccccCCCc-eEEEecccccccccCCCEEEEeccCCCC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKK-DNLIHHFGNPR-FELIRHDVVEPILLEVDQIYHLACPASP 192 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~-~~~~~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~Ag~~~~ 192 (447)
||.|+||+|.+|+.++..|..+|. +++++|....... .++.+...... -..+..+-..+.+.++|+||.+||...
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~- 80 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR- 80 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC-
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC-
Confidence 699999999999999999998885 7888887432110 11111111111 123334444456789999999999532
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
....+..+.++.|....+.+++.+++++. -++.+-|
T Consensus 81 -~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 81 -KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp -CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred -CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 22345677899999999999999999875 4444443
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.81 E-value=3.1e-05 Score=63.31 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCcc---cccccc-CCCceEEEecccccccccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKD---NLIHHF-GNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~---~~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
+.|||.|+|+ |++|..++..|+.+| .+|+++|+.+...+. ++.+.. ..........|. +++.++|+||.+|
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~--~~~~~adivvita 80 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY--SDCKDADLVVITA 80 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG--GGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH--HHhccccEEEEec
Confidence 4678999995 999999999999987 589999986432211 111111 112233444453 3578899999999
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
|... ....+..+....|+.-.+.+.+.+++++. -++.+-|
T Consensus 81 g~~~--~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 81 GAPQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp CC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cccc--CCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 8533 22334556788999999999999999876 4554444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.81 E-value=2.8e-05 Score=63.75 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCc---cccccc--cCCCceEEEecccccccccCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKK---DNLIHH--FGNPRFELIRHDVVEPILLEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~---~~~~~~--~~~~~v~~~~~D~~~~~~~~~d~Vih 185 (447)
..++||.|+|+ |.+|..++..|+.+|. ++.++|+.+...+ .++.+. .....+.....|. +++.++|+||.
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~--~~l~daDvvvi 80 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--DDCRDADLVVI 80 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--GGTTTCSEEEE
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH--HHhccceeEEE
Confidence 46678999996 9999999999999875 8999987543211 111111 1122334444443 56788999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA 222 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~ 222 (447)
+||... .......+.+..|..-.+.+++.+++++.
T Consensus 81 tag~~~--~~~~~R~dl~~~N~~i~~~i~~~i~~~~p 115 (148)
T d1ldna1 81 CAGANQ--KPGETRLDLVDKNIAIFRSIVESVMASGF 115 (148)
T ss_dssp CCSCCC--CTTTCSGGGHHHHHHHHHHHHHHHHHHTC
T ss_pred eccccc--ccCcchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 998543 23345567888999999999999888875
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.68 E-value=0.00026 Score=57.28 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=67.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccc---cccccC-CCceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDN---LIHHFG-NPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~---~~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+||.|+|+ |.+|..++..|+.++. ++.++|++....+.. +.+... ......... ...++.++|+||-+||.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~~~~~~~adivvitag~ 78 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG--DYSDVKDCDVIVVTAGA 78 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CGGGGTTCSEEEECCCC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC--cHHHhCCCceEEEeccc
Confidence 46889996 9999999999999875 899999876543322 222111 112333333 34568889999999985
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA 222 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~ 222 (447)
.. ....+..+....|..-...+++.+++++.
T Consensus 79 ~~--~~~~~r~~l~~~N~~i~~~i~~~i~~~~p 109 (142)
T d1y6ja1 79 NR--KPGETRLDLAKKNVMIAKEVTQNIMKYYN 109 (142)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cc--CcCcchhHHhhHHHHHHHHHHHHhhccCC
Confidence 42 22345667889999999999999998875
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.66 E-value=0.00015 Score=59.87 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---cccccc--CCCceEEEecccccccccCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHF--GNPRFELIRHDVVEPILLEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~D~~~~~~~~~d~Vih 185 (447)
.+.++|.|+|+ |.+|..++..|+.+|. ++.++|+.++.... ++.+.. ..........| ...+.+.|+||.
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d--~~~~~~adiVVi 94 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD--YSVTANSKIVVV 94 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS--GGGGTTCSEEEE
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc--hhhcccccEEEE
Confidence 35568999995 9999999999999986 89999875433221 111111 11122222223 346788999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
+||... ....+..+....|..-.+.++...++++. -++.+|
T Consensus 95 tAg~~~--~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 95 TAGVRQ--QEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp CCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred ecCCcc--ccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 999643 22345667888999999999999988775 344444
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.65 E-value=0.00019 Score=58.12 Aligned_cols=108 Identities=12% Similarity=0.076 Sum_probs=73.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCCCCCccccccc-----cCCCceEEEecccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYFTGKKDNLIHH-----FGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~~~~~~~~~~~-----~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
|||.|+|+ |.+|..++..|+.+| .++.++|+++.......... .......+...+. .+++.++|+||-+||
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~~dadvvvitag 78 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSND-YADTANSDIVIITAG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGGTTCSEEEECCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCC-HHHhcCCeEEEEEEe
Confidence 68999995 999999999999987 48999998654322111111 0112333332222 346789999999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEE
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLT 227 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~ 227 (447)
... .......+....|..-...+.+.+.+++. -++.+
T Consensus 79 ~~~--~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aiviv 116 (142)
T d1guza1 79 LPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116 (142)
T ss_dssp CCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred cCC--CCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 533 23344667888999999999999988775 34443
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.64 E-value=0.00015 Score=56.23 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=73.7
Q ss_pred CCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEe
Q 013226 107 VPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 107 ~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
.|....+++|+|+|+| .|-+|..-++.|++.|++|++++.... ++........++.+...+..+..+.+++.|+.+
T Consensus 4 ~Pi~l~l~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~~---~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~a 79 (113)
T d1pjqa1 4 LPIFCQLRDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFI---PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAA 79 (113)
T ss_dssp EEEEECCBTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCC---HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEEC
T ss_pred cceEEEeCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCC---hHHHHHHhcCCceeeccCCCHHHhCCCcEEeec
Confidence 3555678999999999 789999999999999999999875432 333333455678888888888888999999865
Q ss_pred ccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Q 013226 187 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229 (447)
Q Consensus 187 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS 229 (447)
.+ +. ..| ..+.+.|++.+ .+|++..
T Consensus 80 t~---------d~----~~n----~~i~~~a~~~~-ilVNv~D 104 (113)
T d1pjqa1 80 TD---------DD----TVN----QRVSDAAESRR-IFCNVVD 104 (113)
T ss_dssp CS---------CH----HHH----HHHHHHHHHTT-CEEEETT
T ss_pred CC---------CH----HHH----HHHHHHHHHcC-CEEEeCC
Confidence 42 11 122 25777888877 4565543
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.63 E-value=0.00013 Score=61.26 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC---C----eEEEEecCCCCCc-ccc----ccccCCCceEEEecccccccccCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRG---D----SVIVVDNYFTGKK-DNL----IHHFGNPRFELIRHDVVEPILLEVD 181 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G---~----~V~~l~r~~~~~~-~~~----~~~~~~~~v~~~~~D~~~~~~~~~d 181 (447)
+..+|.||||+|.||.+++..|+... . .+++++....... +.+ .+......-.....+-..+++.+.|
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 34579999999999999999998742 2 4455554321110 111 1111111223344455556788999
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-C--CeEEEEe
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-G--ARFLLTS 228 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g--~r~v~~S 228 (447)
+||-+||. +........+.+..|..-...+.+++.++ . ++++.+|
T Consensus 103 vVvi~ag~--~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 103 WALLIGAK--PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp EEEECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred eEEEeecc--CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 99999985 34444567789999999999999999885 3 2555554
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00015 Score=54.20 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=62.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
.+++|+|+|.|. |--|..+++.|.++|++|++.|.+......... . ....+......+..+.++|.||-.-|+..
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~d~vi~SPGi~~ 76 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKL---P-EAVERHTGSLNDEWLMAADLIVASPGIAL 76 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGS---C-TTSCEEESBCCHHHHHHCSEEEECTTSCT
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHH---h-hccceeecccchhhhccCCEEEECCCCCC
Confidence 468899999995 888999999999999999999986543322221 1 23334444444445667899998776421
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEE
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v 225 (447)
.+ .+++.|++.|+.+|
T Consensus 77 -----~~-------------~~~~~a~~~gi~ii 92 (93)
T d2jfga1 77 -----AH-------------PSLSAAADAGIEIV 92 (93)
T ss_dssp -----TS-------------HHHHHHHHTTCEEE
T ss_pred -----CC-------------HHHHHHHHcCCCeE
Confidence 12 36777888887665
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.00019 Score=58.30 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=55.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-C---eEEEEecCCCCCccccccccCCCceEEEeccccc-ccccCCCEEEEeccC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRG-D---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE-PILLEVDQIYHLACP 189 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G-~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~d~Vih~Ag~ 189 (447)
+|+|.|.||||++|+.+++.|+++. + +++.+.++...... .. . .... ....++.+ ..+.++|++|.+++-
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~-~~-~-~~~~--~~~~~~~~~~~~~~~DivF~a~~~ 75 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA-PS-F-GGTT--GTLQDAFDLEALKALDIIVTCQGG 75 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC-CG-G-GTCC--CBCEETTCHHHHHTCSEEEECSCH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc-cc-c-cCCc--eeeecccchhhhhcCcEEEEecCc
Confidence 4689999999999999999888764 2 66666553222111 11 0 1111 11112222 356789999988741
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCcccc
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVY 233 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~ 233 (447)
.-...+...+.+.|.+.+.++.++.|
T Consensus 76 ------------------~~s~~~~~~~~~~g~~~~VID~Ss~f 101 (146)
T d1t4ba1 76 ------------------DYTNEIYPKLRESGWQGYWIDAASSL 101 (146)
T ss_dssp ------------------HHHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred ------------------hHHHHhhHHHHhcCCCeecccCCccc
Confidence 11334566666778764455544444
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.58 E-value=0.00015 Score=58.83 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=74.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---cccccc-CCCceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHF-GNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.||.|+|+ |.+|.+++..|+.+|. ++.++|+.+...+. ++.+.. -.........+.. +++.+.|+||-+||.
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~ 79 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP 79 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEeccc
Confidence 46999996 9999999999999985 89999876432221 111110 0112333333333 357889999999995
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
.. ....+..+.+..|..-.+.++..+++++. -++.+-|
T Consensus 80 ~~--~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 80 RQ--KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp CC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred cc--CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 43 33345667889999999999999988875 4444333
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.56 E-value=0.00021 Score=57.74 Aligned_cols=107 Identities=15% Similarity=0.008 Sum_probs=73.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCC--Cc---ccccccc-CCCceEEEecccccccccCCCEEEEecc
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTG--KK---DNLIHHF-GNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~--~~---~~~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
||.|+|++|.+|..++..|+.++. ++.++|..... .. .++.+.. -.........| .+.+.++|+||-+||
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~--~~~~~~aDiVvitaG 79 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG--YEDTAGSDVVVITAG 79 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC--GGGGTTCSEEEECCC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC--HHHhhhcCEEEEecc
Confidence 699999999999999999999986 78888853211 10 1121111 12233333333 345789999999999
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEE
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLT 227 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~ 227 (447)
... ....+..+.++.|..-.+.+.+.+++++. .++.+
T Consensus 80 ~~~--~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivv 118 (142)
T d1o6za1 80 IPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTT 118 (142)
T ss_dssp CCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEC
T ss_pred ccc--ccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 532 23345677899999999999999998874 44444
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.51 E-value=0.00028 Score=57.96 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccc---cccc--cCCCceEEEecccccccccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDN---LIHH--FGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~---~~~~--~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
+.+||.|+|+ |.+|..++..|...+. +++++|.++...... +.+. ...........+..+.++.+.|+||-+|
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita 84 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA 84 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence 5678999996 9999999988888775 888888754322211 1111 0112223333333455678999999999
Q ss_pred cCCCCCC-cc--cChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 188 CPASPVH-YK--FNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 188 g~~~~~~-~~--~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
|...... +. ....+....|..-...+++.+++++. -++.+-|
T Consensus 85 g~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 85 GLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp SCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred ccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 8653221 11 24556888999999999999998876 4444444
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.48 E-value=9.9e-05 Score=60.83 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC----e---EEEEecCCCCCccccc------cccCCC-ceEEEecccccccccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD----S---VIVVDNYFTGKKDNLI------HHFGNP-RFELIRHDVVEPILLE 179 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~----~---V~~l~r~~~~~~~~~~------~~~~~~-~v~~~~~D~~~~~~~~ 179 (447)
++++|.|+||+|++|++++..|+..+. . ..+++- ....+... +..... .-.....+-...++.+
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI--PQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC--GGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc--ccchhhHcCchhhhhccccccccccccCCchhhhccc
Confidence 456899999999999999999988653 1 122221 11111110 011111 2223333444567889
Q ss_pred CCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-CC--eEEEEe
Q 013226 180 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA--RFLLTS 228 (447)
Q Consensus 180 ~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g~--r~v~~S 228 (447)
.|+||-+||.. .....+..+.+..|+.-.+.+.+.+.++ .. .++.+|
T Consensus 81 advViitaG~~--~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 81 ADYALLVGAAP--RKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp CSEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccEEEeecCcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 99999999964 3334456778899999999999998885 33 444444
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.46 E-value=0.00015 Score=57.94 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=49.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 187 (447)
|+|+|+|+ |.+|+.+++.|.+.|++|++++.+++.. +.+... ..+.++.+|.+++. +...|.++-+.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~-~~~~~~---~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDIC-KKASAE---IDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHH---CSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhh-hhhhhh---hhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 78999996 9999999999999999999999864322 112111 25678888887764 34688888653
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.41 E-value=0.00031 Score=56.67 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=73.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccc---ccccc-CCCceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDN---LIHHF-GNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~---~~~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
|||.|.|+ |.+|..++..|+.++. ++.++|+.+...... +.+.. -.........| .+++.+.|+||-+||.
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~--~~~~~~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc--HHHhcCCCEEEEeccc
Confidence 68999996 9999999999988874 899998754322211 11100 01233334333 3468899999999985
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
.. .......+.+..|..-...+.+.+++++. -++.+-|
T Consensus 78 ~~--~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 78 PQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp CC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cc--CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 43 22345667888999999999999988875 4444433
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.40 E-value=5.2e-05 Score=64.56 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=32.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
|||.|+||+|.+|+.|++.|++.|++|++.+|+++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 68999999999999999999999999999999644
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.00014 Score=60.39 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=45.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceE-EEecccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFE-LIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~-~~~~D~~~~~~~~~d~Vih~A 187 (447)
|||+|.|+ |.+|..++..|.+.|++|.+++|................... .+..+ .......+|+||.+.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~iii~v 71 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAN-DPDFLATSDLLLVTL 71 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEES-CHHHHHTCSEEEECS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccc-hhhhhcccceEEEee
Confidence 78999996 999999999999999999999997543222111111111111 11111 223345799999875
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.39 E-value=0.00012 Score=60.46 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---cccccc--CCCceEEEecccccccccCCCEEEE
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHF--GNPRFELIRHDVVEPILLEVDQIYH 185 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~D~~~~~~~~~d~Vih 185 (447)
++..+|.|+|+ |.+|..++..|+.+|. ++.++|++.+.... ++.+.. ..........| ...+.+.|+||.
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d--~~~~~~adivvi 93 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD--YNVSANSKLVII 93 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS--GGGGTTEEEEEE
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc--hhhhccccEEEE
Confidence 45568999995 9999999999999975 89999876432221 121111 11122222233 345678999999
Q ss_pred eccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC--eEEEEe
Q 013226 186 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 228 (447)
Q Consensus 186 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~--r~v~~S 228 (447)
+||..... ..+..+.++.|..-.+.+...+++++. .++.+|
T Consensus 94 tag~~~~~--~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 94 TAGARMVS--GQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp CCSCCCCT--TTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred ecccccCC--CCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 99854322 234455678899999999888888765 444443
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.32 E-value=0.00073 Score=54.67 Aligned_cols=95 Identities=19% Similarity=0.122 Sum_probs=59.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
.|+|.|.||||++|+.+++.|.+++| ++..+..+.. ..+.+.. ..-++...+..+..+.++|++|.+++.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~-~Gk~i~~----~~~~~~~~~~~~~~~~~~d~vf~a~p~-- 74 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES-AGQRMGF----AESSLRVGDVDSFDFSSVGLAFFAAAA-- 74 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT-TTCEEEE----TTEEEECEEGGGCCGGGCSEEEECSCH--
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc-CCcceee----ccccchhccchhhhhccceEEEecCCc--
Confidence 47899999999999999999987664 6666544321 1111111 112333334444556789999977641
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccc
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 232 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v 232 (447)
.....+...+.+.|+++|-.||..-
T Consensus 75 ----------------~~s~~~~~~~~~~g~~VID~Ss~fR 99 (144)
T d2hjsa1 75 ----------------EVSRAHAERARAAGCSVIDLSGALE 99 (144)
T ss_dssp ----------------HHHHHHHHHHHHTTCEEEETTCTTT
T ss_pred ----------------chhhhhccccccCCceEEeechhhc
Confidence 1123445556677888887777653
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.32 E-value=0.0004 Score=56.13 Aligned_cols=110 Identities=15% Similarity=0.035 Sum_probs=73.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---cccccc--CCCceEEEecccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHF--GNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
|||.|+|+ |.+|..++..|+.+|. ++.++|+.++..+. ++.+.. ......+...+. .+++.+.|+||-.||
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag 78 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEecc
Confidence 68999995 9999999999998874 79999875432211 111111 111222222222 257889999999998
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
... ....+..+....|..-...+.+.+++++. -++.+-|
T Consensus 79 ~~~--~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 79 LAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp CCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred ccC--CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 532 33345677888999999999999999875 4444444
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.26 E-value=0.00028 Score=58.02 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=66.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEecCCCCCc-cccc----cccCCCceEEEecccccccccCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-------SVIVVDNYFTGKK-DNLI----HHFGNPRFELIRHDVVEPILLEVD 181 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-------~V~~l~r~~~~~~-~~~~----~~~~~~~v~~~~~D~~~~~~~~~d 181 (447)
++++|.|+||+|.+|.+++..|+..+- +++.++....... +.+. .............+-...++.++|
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 356899999999999999999886532 3444444211110 1110 011111223333344456788999
Q ss_pred EEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHC-CC
Q 013226 182 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA 222 (447)
Q Consensus 182 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-g~ 222 (447)
+||-+||... ....+..+.++.|..-.+.+.....++ +.
T Consensus 82 vVVitag~~~--~~g~sr~dll~~N~~i~k~~~~~i~k~a~~ 121 (154)
T d5mdha1 82 VAILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKK 121 (154)
T ss_dssp EEEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCT
T ss_pred EEEEecccCC--CCCCchhHHHHHhHHHHHHHHHHHHhhCCC
Confidence 9999998543 233445567889999999999888664 53
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.15 E-value=0.00041 Score=56.33 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=70.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCcc---cccccc--CCCceEEEecccccccccCCCEEEEecc
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKD---NLIHHF--GNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
|||.|+| +|.+|..++..|+.+|. ++.++|+.....+. ++.+.. ..........| .+.+.+.|+||-+||
T Consensus 2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d--~~~l~~adiVVitaG 78 (146)
T d1hyha1 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND--WAALADADVVISTLG 78 (146)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC--GGGGTTCSEEEECCS
T ss_pred CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC--HHHhccccEEEEecc
Confidence 6899999 59999999999998874 88888875432211 111111 11122333333 345788999999998
Q ss_pred CCCCCCcc--cChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 189 PASPVHYK--FNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 189 ~~~~~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
........ .+-.+..+.|..-.+.+.+.+++++. -++.+-|
T Consensus 79 ~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp CGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 54322111 12234678899999999999998875 4444444
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.09 E-value=0.0021 Score=53.84 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=59.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCC-C-CCccccc---ccc-CCCceEEEecccccccccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYF-T-GKKDNLI---HHF-GNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~-~-~~~~~~~---~~~-~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
|++|.|.||||++|+.|++.|.++. .++..+.... . ...+.+. ... ..........+..+....++|+||.+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al 80 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT 80 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence 5789999999999999999999884 4666553221 1 1111111 111 112333333444444566799999876
Q ss_pred cCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccc
Q 013226 188 CPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 232 (447)
Q Consensus 188 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v 232 (447)
+. .....+.....+.++++|-.|+..-
T Consensus 81 p~------------------~~s~~~~~~~~~~~~~vIDlSadfR 107 (179)
T d2g17a1 81 AH------------------EVSHDLAPQFLQAGCVVFDLSGAFR 107 (179)
T ss_dssp CH------------------HHHHHHHHHHHHTTCEEEECSSTTS
T ss_pred cc------------------hhHHHHhhhhhhcCceeeccccccc
Confidence 41 1112344555667788988888753
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.07 E-value=0.00026 Score=59.14 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
+.|+|+|.|| |++|+.++++|.++|++|++++|+.+
T Consensus 1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~ 36 (182)
T d1e5qa1 1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLE 36 (182)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChH
Confidence 3689999985 99999999999999999999999754
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.05 E-value=0.00039 Score=56.21 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=66.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCcccccccc-----CCCceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHF-----GNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
++|.|+|+ |.+|..++..|+.++. ++.++|..+........... ......+...+. -..+.+.|+||-+||.
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d-~~~~~~advvvitag~ 79 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNN-YADTANSDVIVVTSGA 79 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCSC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCc-HHHhcCCCEEEEeeec
Confidence 58999995 9999999999888874 88888875442221111110 011222222222 2356789999999995
Q ss_pred CCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 190 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
.. ....+..+.+..|..-...++....+++. -++.+-|
T Consensus 80 ~~--~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 80 PR--KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp C-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred cC--CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 43 22334556778999999999999988775 4444433
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00097 Score=58.14 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=50.6
Q ss_pred cCCCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccc-
Q 013226 112 QRKSLRILVTGG----------------AGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE- 174 (447)
Q Consensus 112 ~~~~~~ilVtGa----------------sG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~- 174 (447)
.++||+||||+| ||-.|.+|++.+.++|++|+++.-......+ ..+..+.....+
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p--------~~~~~~~~~t~~~ 74 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTP--------PFVKRVDVMTALE 74 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCC--------TTEEEEECCSHHH
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcc--------cccccceehhhHH
Confidence 457788888876 8999999999999999999998763322111 234444433222
Q ss_pred ------ccccCCCEEEEeccCCC
Q 013226 175 ------PILLEVDQIYHLACPAS 191 (447)
Q Consensus 175 ------~~~~~~d~Vih~Ag~~~ 191 (447)
..+.++|++|++|++.+
T Consensus 75 m~~~~~~~~~~~D~~i~aAAvsD 97 (223)
T d1u7za_ 75 MEAAVNASVQQQNIFIGCAAVAD 97 (223)
T ss_dssp HHHHHHHHGGGCSEEEECCBCCS
T ss_pred HHHHHHhhhccceeEeeeechhh
Confidence 23467999999999865
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.93 E-value=0.00017 Score=59.64 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=53.4
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.+++++|+|+|+ |.+|+.+++.|.+.|. +|.+..|..+. .+.+...+ .......+-....+.++|+||++.+.
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~k-a~~l~~~~---~~~~~~~~~~~~~l~~~Divi~atss 94 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYER-AVELARDL---GGEAVRFDELVDHLARSDVVVSATAA 94 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHH-HHHHHHHH---TCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHH-HHHHHHhh---hcccccchhHHHHhccCCEEEEecCC
Confidence 458899999996 9999999999999998 57787775332 22222222 34555666666677899999999863
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.93 E-value=0.00015 Score=60.71 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccc--ccccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVE--PILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~--~~~~~~d~Vih~Ag 188 (447)
.|.+|+|+||+|.+|...++.+...|.+|+++++++... +... .++...+ +...|..+ ....++|+||++.|
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~-~~~~-~lGa~~~-i~~~~~~~~~~~~~g~D~v~d~~G 100 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL-ALPL-ALGAEEA-ATYAEVPERAKAWGGLDLVLEVRG 100 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS-HHHH-HTTCSEE-EEGGGHHHHHHHTTSEEEEEECSC
T ss_pred CCCEEEEEeccccchhhhhhhhccccccccccccccccc-cccc-cccccee-eehhhhhhhhhccccccccccccc
Confidence 678899999999999999998888999999998864322 2222 2222211 11112111 12357999999876
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.92 E-value=0.0029 Score=51.03 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=53.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-C---eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG-D---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPAS 191 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G-~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~ 191 (447)
|+|.|.||||++|+.|++.|+++. + ++..+..+.... . .... ...... +........+.++|+||.+.+.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g-k-~~~~-~~~~~~-~~~~~~~~~~~~~DvvF~alp~-- 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV-P-APNF-GKDAGM-LHDAFDIESLKQLDAVITCQGG-- 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS-B-CCCS-SSCCCB-CEETTCHHHHTTCSEEEECSCH--
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc-c-cccc-CCccee-eecccchhhhccccEEEEecCc--
Confidence 689999999999999999888753 3 555554322111 1 1111 111111 1111122345789999988741
Q ss_pred CCCcccChHHHHHHHHHHHHHHHHHHHHCCCe--EEEEeCcc
Q 013226 192 PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGAR--FLLTSTSE 231 (447)
Q Consensus 192 ~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r--~v~~SS~~ 231 (447)
. -+..+...+.+.|.+ +|=.||..
T Consensus 75 --------------~--~s~~~~~~l~~~g~~~~VIDlSsdf 100 (147)
T d1mb4a1 75 --------------S--YTEKVYPALRQAGWKGYWIDAASTL 100 (147)
T ss_dssp --------------H--HHHHHHHHHHHTTCCSEEEESSSTT
T ss_pred --------------h--HHHHHhHHHHHcCCceEEEeCCccc
Confidence 1 133556666777865 55566654
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.80 E-value=0.0063 Score=49.22 Aligned_cols=112 Identities=14% Similarity=0.174 Sum_probs=71.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccc---cccc--cCCCceEEEecccccccccCCCEEEEeccC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDN---LIHH--FGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~---~~~~--~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.||.|+|+ |.+|..++..|..++. ++.++|+.....+.. +.+. .......+...+ ..+.+.+.|+||-+||.
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~-~~~~~~~advvvitag~ 81 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN-TYDDLAGADVVIVTAGF 81 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC-CGGGGTTCSEEEECCSC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc-cccccCCCcEEEEeccc
Confidence 57999995 9999999988877764 888888754322211 1111 011122222222 33567889999999996
Q ss_pred CCCCC-c--ccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 190 ASPVH-Y--KFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 190 ~~~~~-~--~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
..... . ..+..+.+..|..-...+++.+++++. -++.+-|
T Consensus 82 ~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 82 TKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp SSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred ccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 43221 1 123556789999999999999998875 4444433
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00055 Score=57.15 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=50.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEecccccccccCCCEEEEeccC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..++|+|+|.| +|+.+++++..|.+.|.+|+++.|+.... +.+...+. ...+..+..+ +.....+|+|||+...
T Consensus 15 ~~~~k~vlIlG-aGGaarai~~al~~~g~~i~I~nRt~~ka-~~l~~~~~~~~~~~~~~~~--~~~~~~~dliIN~Tp~ 89 (170)
T d1nyta1 15 IRPGLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRA-EELAKLFAHTGSIQALSMD--ELEGHEFDLIINATSS 89 (170)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHH-HHHHHHTGGGSSEEECCSG--GGTTCCCSEEEECCSC
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHhcccceEEEeccchHHHH-HHHHHHHhhcccccccccc--cccccccceeeccccc
Confidence 45789999999 69999999999999999999998864432 22222211 1233333333 3334578999998753
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.76 E-value=0.00065 Score=57.01 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccc----cccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP----ILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~----~~~~~d~Vih~Ag 188 (447)
.|.+|||+||+|++|...++-+...|.+|+++++++.+ .+....++...+...+.+..+. .-.++|+||.+.|
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k--~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg 107 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE--HDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG 107 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC--HHHHHHTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH--HHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence 56789999999999999999888899999999885443 2222223322222112111111 1236999999987
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.73 E-value=0.0037 Score=49.40 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=47.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 187 (447)
|+++|.| .|-+|+.+++.|.++|++|++++.++.... . +.......+.+|.+++. +.++|.||-+.
T Consensus 1 k~~iIiG-~G~~G~~la~~L~~~g~~vvvid~d~~~~~-~----~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~ 72 (134)
T d2hmva1 1 KQFAVIG-LGRFGGSIVKELHRMGHEVLAVDINEEKVN-A----YASYATHAVIANATEENELLSLGIRNFEYVIVAI 72 (134)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCHHHHH-H----TTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCeEEEecCcHHHHH-H----HHHhCCcceeeecccchhhhccCCccccEEEEEc
Confidence 5688887 599999999999999999999997533221 1 12234566777877664 34688888554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.71 E-value=0.00021 Score=60.45 Aligned_cols=73 Identities=19% Similarity=0.112 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEeccccccc-----ccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPI-----LLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~-----~~~~d~Vih~A 187 (447)
+|.+|+|+||+|.+|...++-....|++|++++++.+. .+... ..+... ++..+.|..+.. -.++|+||++.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~-~~~~~-~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~v 106 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEK-IAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV 106 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHH-HHHHH-HTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHH-HHHHH-hhhhhhhcccccccHHHHHHHHhhcCCCceeEEec
Confidence 67899999999999999999888899999999985332 22222 222222 222223332222 24699999998
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
|
T Consensus 107 G 107 (182)
T d1v3va2 107 G 107 (182)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.66 E-value=0.00095 Score=54.37 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=35.0
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+...++|.|.||.|.+|+.+++.|.+.||+|.+.+|+.
T Consensus 5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 345678999999999999999999999999999999853
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.66 E-value=0.0029 Score=49.85 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=52.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEE-ecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVV-DNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 194 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l-~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~ 194 (447)
|+|.|.|++|-+|+.|++.+.++|++++.. ++. ....+.++|+||.+.-+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~------------------------~~~~~~~~DVvIDFS~p----- 51 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN------------------------GVEELDSPDVVIDFSSP----- 51 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT------------------------EEEECSCCSEEEECSCG-----
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC------------------------cHHHhccCCEEEEecCH-----
Confidence 689999999999999999999999987753 211 11234568999977521
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Q 013226 195 YKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229 (447)
Q Consensus 195 ~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS 229 (447)
.++..+++.|.++++.+|.=+|
T Consensus 52 -------------~~~~~~l~~~~~~~~p~ViGTT 73 (128)
T d1vm6a3 52 -------------EALPKTVDLCKKYRAGLVLGTT 73 (128)
T ss_dssp -------------GGHHHHHHHHHHHTCEEEECCC
T ss_pred -------------HHHHHHHHHHHhcCCCEEEEcC
Confidence 2345778899999988765444
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.60 E-value=0.0011 Score=55.22 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=50.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccC-CCceEEEecccccccccCCCEEEEeccCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFG-NPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
..++++|+|.| +|+.++.++..|.+.+.+|+++.|+.... +.+.+.+. ...+..+..| +..+..+|+|||+....
T Consensus 15 ~~~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~a-~~l~~~~~~~~~~~~~~~~--~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 15 LRPNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKT-KELAERFQPYGNIQAVSMD--SIPLQTYDLVINATSAG 90 (171)
T ss_dssp CCTTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHH-HHHHHHHGGGSCEEEEEGG--GCCCSCCSEEEECCCC-
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHHH-HHHHHHHhhccccchhhhc--cccccccceeeeccccc
Confidence 45789999998 79999999999999888999999974332 22222211 1233334433 33467799999997643
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.00031 Score=58.87 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCC-ceEEEeccccccc-----ccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEPI-----LLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~-----~~~~d~Vih~A 187 (447)
+|.+|||+||+|.+|...++.+...|.+|+++++++. +.+..+ .++.. -+++-+.|..+.. -.++|+||++.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~-~~~~~~-~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~ 105 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE-GQKIVL-QNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEML 105 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH-HHHHHH-HTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCEEEEEeccccccccccccccccCccccccccccc-cccccc-ccCcccccccccccHHHHhhhhhccCCceEEeecc
Confidence 5778999999999999999988889999999987532 222222 22221 2222233333322 13589999987
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
|
T Consensus 106 g 106 (174)
T d1yb5a2 106 A 106 (174)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.001 Score=47.34 Aligned_cols=36 Identities=36% Similarity=0.382 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
++.+|+|+||+|.+|...++.+...|++|+++.+++
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~ 66 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE 66 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence 567899999999999999998888999999998754
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.35 E-value=0.0011 Score=54.93 Aligned_cols=72 Identities=25% Similarity=0.264 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc-----ccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI-----LLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-----~~~~d~Vih~Ag 188 (447)
.+..|||+||+|.+|...++.....|++|++++++.++. +.+ ..++...+. ...|...+. -.++|.||++.|
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~-~~~-~~lGad~vi-~~~~~~~~~~~~~~~~gvd~vid~vg 99 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA-DYL-KQLGASEVI-SREDVYDGTLKALSKQQWQGAVDPVG 99 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH-HHH-HHHTCSEEE-EHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHH-HHH-HhhcccceE-eccchhchhhhcccCCCceEEEecCc
Confidence 455699999999999999988777899999999864432 222 222322221 112221221 135899999876
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.34 E-value=0.011 Score=47.91 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=55.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC---eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD---SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASP 192 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~ 192 (447)
=+|.|.||||++|++|++.|.++.+ ++..+..+ ......+.. ..-.....+..+....++|.++-+++.
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-~s~G~~~~~----~~~~~~~~~~~~~~~~~~d~~f~~~~~--- 73 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RSAGKSLKF----KDQDITIEETTETAFEGVDIALFSAGS--- 73 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-GGTTCEEEE----TTEEEEEEECCTTTTTTCSEEEECSCH---
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-ccccccccc----cCCcccccccchhhhhhhhhhhhccCc---
Confidence 3799999999999999998888754 33334321 111111110 111223334445556678988877641
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccc
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEV 232 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v 232 (447)
..+......+.+.++++|=.|+..-
T Consensus 74 ---------------~~s~~~~~~~~~~~~~VIDlSsdfR 98 (154)
T d2gz1a1 74 ---------------STSAKYAPYAVKAGVVVVDNTSYFR 98 (154)
T ss_dssp ---------------HHHHHHHHHHHHTTCEEEECSSTTT
T ss_pred ---------------cchhhHHhhhccccceehhcChhhh
Confidence 1122344455566778888888754
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.21 E-value=0.00048 Score=58.00 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEeccccccc-----ccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPI-----LLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~-----~~~~d~Vih~A 187 (447)
+|.+|||+||+|.+|...++.+...|.+|++++++.+. .+.+. ..+... ++.-+.|+.+.. -.++|+||.+.
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~-~~~l~-~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~ 102 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAK-REMLS-RLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSL 102 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHH-HHHHH-TTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeeccccc-ccccc-cccccccccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence 56789999999999999999888889999999875332 22222 222221 222222332322 13699999998
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
|
T Consensus 103 g 103 (183)
T d1pqwa_ 103 A 103 (183)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.00043 Score=58.11 Aligned_cols=73 Identities=18% Similarity=0.130 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCC-ceEEEeccccccc-----ccCCCEEEEec
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEPI-----LLEVDQIYHLA 187 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~-----~~~~d~Vih~A 187 (447)
.|.+|+|+||+|.+|..+++-+...|.+|++++++..+. +..+ .++.. -+++-+.|+.++. -.++|+|+.+.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~-~~~~-~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~ 105 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA-QSAL-KAGAWQVINYREEDLVERLKEITGGKKVRVVYDSV 105 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHH-HHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHH-HHHH-hcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence 467899999999999999998888899999998864432 2222 22222 2333334443332 13589999988
Q ss_pred c
Q 013226 188 C 188 (447)
Q Consensus 188 g 188 (447)
+
T Consensus 106 g 106 (179)
T d1qora2 106 G 106 (179)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0016 Score=54.56 Aligned_cols=37 Identities=35% Similarity=0.385 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.+.+|||+||+|++|...++.....|++|++++++++
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~ 67 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES 67 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchh
Confidence 4457999999999999999988889999999998644
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.13 E-value=0.0035 Score=51.57 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=42.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
|+|.|.| .|.+|..+++.|.+.|++|++.+|+...... ... ...++....+. +.+.++|+||-+.
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~-a~~---~~~~~~~~~~~--~~~~~~DiIilav 65 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEK-AVE---RQLVDEAGQDL--SLLQTAKIIFLCT 65 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-HHH---TTSCSEEESCG--GGGTTCSEEEECS
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCchHHHH-HHH---hhccceeeeec--ccccccccccccC
Confidence 6899997 6999999999999999999999986432211 111 11122121111 3567899998653
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.11 E-value=0.0075 Score=46.85 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.+++++|.| +|++|-+++..|.++|.+|+++.+...
T Consensus 29 ~~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVG-GGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCeEEEEC-cchhHHHHHHHhhcccceEEEEeeccc
Confidence 357899998 899999999999999999999998654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.00 E-value=0.0099 Score=48.88 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=44.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
+|+|+|.| .|.+|..+++.|.+.|+ +|++.|++.+..... .....++....+..+.....+|+||-+.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~dlIila~ 70 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA----VDLGIIDEGTTSIAKVEDFSPDFVMLSS 70 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH----HHTTSCSEEESCGGGGGGTCCSEEEECS
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH----HHhhcchhhhhhhhhhhccccccccccC
Confidence 46799998 79999999999999996 778888753222111 1112233344444444455789999775
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.0073 Score=49.51 Aligned_cols=99 Identities=15% Similarity=0.274 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CCeEEE-EecCCCCCc-cccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDR-GDSVIV-VDNYFTGKK-DNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~-l~r~~~~~~-~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
+.++|.|.|++|-+|+.+++.+.+. +.++.. ++|...... .................|-.+..+..+|+||.+.
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs--- 79 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT--- 79 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec---
Confidence 4568999999999999999998886 456554 344322111 1111111111111122233445667799999764
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCc
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~ 230 (447)
+-.++...++.|.++++.+|.=+|.
T Consensus 80 ---------------~p~~~~~~~~~a~~~~~~~ViGTTG 104 (162)
T d1diha1 80 ---------------RPEGTLNHLAFCRQHGKGMVIGTTG 104 (162)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred ---------------cHHHHHHHHHHHHhccceeEEecCC
Confidence 2234557788999999887765553
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.95 E-value=0.0072 Score=49.77 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.+.+|+|+| +|.||...++.+...|.+|+++++++.
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~ 61 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPR 61 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHH
Confidence 566899997 799999999988889999999988543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.88 E-value=0.009 Score=50.83 Aligned_cols=32 Identities=41% Similarity=0.577 Sum_probs=29.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
|+|.|.| .|++|..++..|++.|++|+++|.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 6899996 9999999999999999999999875
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.002 Score=53.39 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCC-ceEEEecccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.|.+|+|.|+ |.||...++.+...|+++++++++.... + ....++.. -+++.+.+.......++|++|.+.|.
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~-~-~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~ 103 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKR-E-AAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA 103 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGH-H-HHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHH-H-HHhccCCcEEEECchhhHHHHhcCCCceeeeeeec
Confidence 5778999985 9999999988888999999988754322 2 22223322 12222222233344579999999873
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.79 E-value=0.059 Score=41.98 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=54.8
Q ss_pred CCCCeEEEEcCC---ChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 113 RKSLRILVTGGA---GFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 113 ~~~~~ilVtGas---G~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
+..++|.|+|+| +.+|..+.+.|.+.| ++|+.+... .+++. ... .-.++.+ .-..+|.++-+..
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~----~~~i~------G~~-~y~sl~d-lp~~vDlvvi~vp 73 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK----EEEVQ------GVK-AYKSVKD-IPDEIDLAIIVVP 73 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS----CSEET------TEE-CBSSTTS-CSSCCSEEEECSC
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccC----ccccC------CeE-eecchhh-cCCCCceEEEecC
Confidence 467899999999 899999999987766 588888532 22211 000 1111111 1235788886542
Q ss_pred CCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCc
Q 013226 189 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTS 230 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS~ 230 (447)
-..+..+++.|.+.|+ .++.+|+.
T Consensus 74 ------------------~~~~~~~~~~~~~~g~~~~vi~s~G 98 (129)
T d2csua1 74 ------------------KRFVKDTLIQCGEKGVKGVVIITAG 98 (129)
T ss_dssp ------------------HHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred ------------------hHHhHHHHHHHHHcCCCEEEEeccc
Confidence 2233467788888898 56767664
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.78 E-value=0.0046 Score=51.09 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
++++|+|.| +|+.+++++..|.+.|. +|.++.|+.+. .+.+..... ...+. .....++|+|||+...
T Consensus 16 ~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~k-a~~L~~~~~---~~~~~----~~~~~~~DliINaTpi 83 (167)
T d1npya1 16 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKT-GQYLAALYG---YAYIN----SLENQQADILVNVTSI 83 (167)
T ss_dssp TTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHH-HHHHHHHHT---CEEES----CCTTCCCSEEEECSST
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHH-HHHHHHhhh---hhhhh----cccccchhhheecccc
Confidence 567899999 69999999999999997 78888886432 222222221 12211 1123468999998654
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.74 E-value=0.0076 Score=50.51 Aligned_cols=33 Identities=27% Similarity=0.563 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVD 146 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~ 146 (447)
+..+|.|.||||++|+.|++.|.++.+ ++..+.
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 456799999999999999999988754 666554
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.64 E-value=0.005 Score=51.23 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=26.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEe
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVD 146 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~ 146 (447)
|++|.|.||||++|+.|++.|.++.+ ++..+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~ 33 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 33 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEee
Confidence 46899999999999999999988754 666554
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.005 Score=50.80 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEe-cccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIR-HDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~-~D~~~~~~~~~d~Vih~Ag~ 189 (447)
.|.+|+|+|+ |.+|...++.+...|.+|+++++++.+ .+..+ .++... ++..+ .|..+....++|.+|.+.+.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k-~~~a~-~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRK-REDAM-KMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTT-HHHHH-HHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhH-HHHhh-ccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 5778999986 999999998877889999999986442 22222 223221 21111 12233334568999998764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.52 E-value=0.036 Score=40.17 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=46.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
.|+|.++|-.|-==+.||+.|.++|+.|.+-|+...+..+.+ ....+.+.... ....+.+.|.||...++.
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L----~~~Gi~i~~gh-~~~~i~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYL----RKLGIPIFVPH-SADNWYDPDLVIKTPAVR 71 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHH----HHTTCCEESSC-CTTSCCCCSEEEECTTCC
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHH----HHCCCeEEeee-cccccCCCCEEEEecCcC
Confidence 378889985544445789999999999999998643322222 23345554332 223346789999888753
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0051 Score=49.74 Aligned_cols=41 Identities=37% Similarity=0.490 Sum_probs=36.4
Q ss_pred CCCccccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEec
Q 013226 106 KVPLGLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDN 147 (447)
Q Consensus 106 ~~~~~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r 147 (447)
.+|...+++||+++|+|| |.+|..-++.|++.|.+|++++-
T Consensus 4 ~lpl~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 4 SLQLAHQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CEEEEECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred cchhheeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 456667899999999996 99999999999999999999964
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.40 E-value=0.0013 Score=55.62 Aligned_cols=75 Identities=21% Similarity=0.050 Sum_probs=44.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCC-ceEEEecccccc----cccCCCEEEEecc
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEP----ILLEVDQIYHLAC 188 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~----~~~~~d~Vih~Ag 188 (447)
.+.+|||+||+|.+|...++-+...|.++++.....+.+...+...++.. -+++-+.|..+. .-.++|+||.+.|
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG 109 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG 109 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence 34689999999999999998877789865554332222222232222222 222222222221 1236999999886
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.37 E-value=0.0066 Score=49.14 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=44.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
|+|.|.| .|.+|+.+++.|+++|++|++.++............ +.. .+..++.+..+|+||-+.
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~--~~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART-----VGV--TETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-----HTC--EECCHHHHHTSSEEEECS
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhc-----ccc--cccHHHHHhhcCeEEEEe
Confidence 6789997 799999999999999999998877543322211111 111 123445667899999775
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.28 E-value=0.0051 Score=51.28 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=48.3
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccc----cCCCceEEEecccccccccCCCEEEEec
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHH----FGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~----~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
..++|+|+|.| +|+.++.++..|.+.| +|.++.|+..... .+... ........+..+..+......|+|||+.
T Consensus 15 ~~~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~ka~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~t 91 (177)
T d1nvta1 15 RVKDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAE-ALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT 91 (177)
T ss_dssp CCCSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHH-HHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred CcCCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhHHH-HHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCC
Confidence 46889999998 7889999999998777 8999988643322 11111 1111122233333444556789999987
Q ss_pred cC
Q 013226 188 CP 189 (447)
Q Consensus 188 g~ 189 (447)
..
T Consensus 92 p~ 93 (177)
T d1nvta1 92 PI 93 (177)
T ss_dssp CT
T ss_pred cc
Confidence 54
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.17 E-value=0.0041 Score=51.09 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=45.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
+++|.|.| .|-+|..++++|+++|++|.+.+|+..... .+.. ......+...+.+..+|+|+-+.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~-~~~~------~~~~~~~~~~e~~~~~diii~~v 65 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVD-GLVA------AGASAARSARDAVQGADVVISML 65 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHH-HHHH------TTCEECSSHHHHHTSCSEEEECC
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhh-hhhh------hhccccchhhhhccccCeeeecc
Confidence 46799997 899999999999999999999998633221 1111 11222333445667789998776
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.10 E-value=0.063 Score=39.46 Aligned_cols=71 Identities=13% Similarity=0.020 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
+.|+|.+.|-.|--=+.||+.|.++|++|.+-|+...+..+.+. ...+.+......+ .+.+.|.||...|+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~----~~Gi~v~~g~~~~-~i~~~d~vV~S~AI 77 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLA----QAGAKIYIGHAEE-HIEGASVVVVSSAI 77 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHH----HTTCEEEESCCGG-GGTTCSEEEECTTS
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHH----HCCCeEEECCccc-cCCCCCEEEECCCc
Confidence 66789999844433377899999999999999986433323322 2245555544433 35778999988775
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.06 E-value=0.006 Score=51.30 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=31.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
-++|.|.|+ |.+|+.++..++..|++|++.|++.+
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 467999995 99999999999999999999998644
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.0095 Score=49.09 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=50.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc---ccc-ccccCCCceEEEecccccccccCCCEEEEe
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK---DNL-IHHFGNPRFELIRHDVVEPILLEVDQIYHL 186 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~---~~~-~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~ 186 (447)
.++.||+++|.|-|.-+|+.|+..|+++|++|..++....... ... ........+..+..|...+.....|+||..
T Consensus 25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsa 104 (171)
T d1edza1 25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 104 (171)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEc
Confidence 5789999999999999999999999999999988765311100 000 000000011122233344445568999988
Q ss_pred ccCC
Q 013226 187 ACPA 190 (447)
Q Consensus 187 Ag~~ 190 (447)
+|..
T Consensus 105 vG~p 108 (171)
T d1edza1 105 VPSE 108 (171)
T ss_dssp CCCT
T ss_pred cCCC
Confidence 7743
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.97 E-value=0.026 Score=46.85 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=47.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCc-ccccc-----c--cCCCceEEEecccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKK-DNLIH-----H--FGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~-~~~~~-----~--~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
|+|.|.| +|-.|..++..|.+.|++|++..|..+... ..+.. . ...........+..++++.++|+||.+.
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av 79 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV 79 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence 7899999 799999999999999999999987432100 00000 0 0111223444455666788899999764
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=94.94 E-value=0.0034 Score=51.48 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=44.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
|+|-|.| .|.+|..+++.|+++|++|++.+|++... +.+... .. ...+...+.+.++|+||-|.
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~-~~~~~~----~~--~~~~~~~e~~~~~d~ii~~v 64 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAI-ADVIAA----GA--ETASTAKAIAEQCDVIITML 64 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHH-HHHHHT----TC--EECSSHHHHHHHCSEEEECC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchh-HHHHHh----hh--hhcccHHHHHhCCCeEEEEc
Confidence 6789998 89999999999999999999999864322 111111 11 12333444566799999875
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.018 Score=47.03 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=34.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
..+.||+|+|.|-+..+|+.|+..|.++|++|+++...
T Consensus 33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~ 70 (166)
T d1b0aa1 33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF 70 (166)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred cccccceEEEEeccccccHHHHHHHHHhhccccccccc
Confidence 35789999999999999999999999999999888653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.75 E-value=0.0038 Score=52.26 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~ 150 (447)
.|.+|+|+|+ |.||...++.+...|+ +|+++++++.
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~ 64 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPN 64 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred CCCEEEEECC-Cccchhheecccccccccccccccccc
Confidence 5778999996 9999999999988998 7999988543
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.73 E-value=0.091 Score=43.72 Aligned_cols=67 Identities=13% Similarity=0.053 Sum_probs=48.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..+.+++|.|.| .|.||+.+++.|..-|.+|+..++....... .....+-.++.+...|+|+.++..
T Consensus 40 ~~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----------~~~~~~~l~ell~~sDii~i~~pl 106 (188)
T d1sc6a1 40 FEARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLG-----------NATQVQHLSDLLNMSDVVSLHVPE 106 (188)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCT-----------TCEECSCHHHHHHHCSEEEECCCS
T ss_pred ccccceEEEEee-cccchhhhhhhcccccceEeeccccccchhh-----------hhhhhhhHHHHHhhccceeecccC
Confidence 457899999998 9999999999999999999999875322211 112223455666778988876643
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.62 E-value=0.09 Score=43.50 Aligned_cols=63 Identities=16% Similarity=0.052 Sum_probs=48.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.+.|++|.|.| .|-||+.+++.|..-|.+|++.++........ ..+-.++.+..+|+|+.+..
T Consensus 39 ~l~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~~-------------~~~~l~ell~~sDiv~~~~p 101 (181)
T d1qp8a1 39 LIQGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGPWR-------------FTNSLEEALREARAAVCALP 101 (181)
T ss_dssp CCTTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSSSC-------------CBSCSHHHHTTCSEEEECCC
T ss_pred cccCceEEEec-cccccccceeeeecccccccccccccccccee-------------eeechhhhhhccchhhcccc
Confidence 47899999999 89999999999999999999998853321110 12345677888999997654
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.54 E-value=0.031 Score=43.20 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+++|+|.| +|++|.+++..|.+.|.+|+++.+..
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecC
Confidence 567899998 89999999999999999999998754
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.45 E-value=0.03 Score=42.83 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+++++|.| +|++|-.++..|.+.|.+|+++.|..
T Consensus 21 ~p~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~ 55 (117)
T d1ebda2 21 VPKSLVVIG-GGYIGIELGTAYANFGTKVTILEGAG 55 (117)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cCCeEEEEC-CCccceeeeeeecccccEEEEEEecc
Confidence 347899999 89999999999999999999998753
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.031 Score=45.83 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=34.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
.++.||+|.|.|-+.-+|+.|+..|+++|++|.+++..
T Consensus 35 i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~ 72 (170)
T d1a4ia1 35 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 72 (170)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred cccccceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence 35799999999999999999999999999999998764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.023 Score=46.67 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEecccccc--------cccCCCEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEP--------ILLEVDQIY 184 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~--------~~~~~d~Vi 184 (447)
.+.+|+|+|+ |.+|...+..+...|+ +|+++++++.+. ++.+.++...+.....+.... .-.++|+||
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl--~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRL--SKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHH--HHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHH--HHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence 4568999985 9999999999999998 788888753322 222223322222222121111 113689999
Q ss_pred Eecc
Q 013226 185 HLAC 188 (447)
Q Consensus 185 h~Ag 188 (447)
.+.|
T Consensus 103 d~~G 106 (171)
T d1pl8a2 103 ECTG 106 (171)
T ss_dssp ECSC
T ss_pred eccC
Confidence 9987
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=94.17 E-value=0.026 Score=45.40 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=50.4
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEec
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLA 187 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 187 (447)
+|+|+|. |-+|+.+++.|.++|++|++++.+++....... .....++.++.+|.+++. +..++.||-+.
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~-~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLE-QRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHH-HHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHH-HhhcCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 6899985 899999999999999999999875432221221 122347889999988874 34588888664
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.017 Score=46.99 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=49.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..+.||++.|.| .|.||+-+++.|...|.+|++.+.++-..-+. ... .+... ..++++...|+||-+.|.
T Consensus 20 ~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A---~~d--G~~v~---~~~~a~~~adivvtaTGn 89 (163)
T d1li4a1 20 VMIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINALQA---AME--GYEVT---TMDEACQEGNIFVTTTGC 89 (163)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH---HHT--TCEEC---CHHHHTTTCSEEEECSSC
T ss_pred ceecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhHHh---hcC--ceEee---ehhhhhhhccEEEecCCC
Confidence 357899999999 99999999999999999999998753222111 111 12222 344556678999888763
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.14 E-value=0.068 Score=40.03 Aligned_cols=39 Identities=18% Similarity=0.038 Sum_probs=33.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
...+||+|+|.| +|--|..++..|++.+.+|+.+.|+..
T Consensus 28 ~~f~gK~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~~ 66 (107)
T d2gv8a2 28 ELFVGESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLGG 66 (107)
T ss_dssp GGGTTCCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred hhcCCCeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence 467899999999 789999999999998888777776544
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=94.02 E-value=0.11 Score=42.30 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDR-GDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASP 192 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~ 192 (447)
+.++|.|.| .|.+|+..++.|.+. +.+++++..+...... .......+..+....++|+|+.+.....
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---------~~~~~~~~~~~~~~~~~D~Vvi~tp~~~- 70 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---------KTPVFDVADVDKHADDVDVLFLCMGSAT- 70 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---------SSCEEEGGGGGGTTTTCSEEEECSCTTT-
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccccc---------ccccccchhhhhhccccceEEEeCCCcc-
Confidence 446799998 799999999999876 4577765543222111 1122333344445567999998764211
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHCCCeEE
Q 013226 193 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFL 225 (447)
Q Consensus 193 ~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v 225 (447)
...++..+.++|+.+|
T Consensus 71 -----------------h~~~a~~aL~aG~~vv 86 (170)
T d1f06a1 71 -----------------DIPEQAPKFAQFACTV 86 (170)
T ss_dssp -----------------HHHHHHHHHTTTSEEE
T ss_pred -----------------cHHHHHHHHHCCCcEE
Confidence 0135566677787665
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.90 E-value=0.041 Score=42.41 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=30.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
+++++|.| +|+||-+++..|.+.|.+|+++.+..
T Consensus 23 p~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 23 PKRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCeEEEEC-CCchHHHHHHHHHhhCcceeEEEecc
Confidence 46899999 89999999999999999999998754
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=93.89 E-value=0.024 Score=47.98 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=46.9
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
+++|++|.|-| -|-+|.++++.|.+.|.+|++.+.+... +.+. .....+.+.. -+-....||+++=||.
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~----~~~~-~~~g~~~~~~--~~~~~~~~DI~iPcA~ 92 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTER----VAHA-VALGHTAVAL--EDVLSTPCDVFAPCAM 92 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH----HHHH-HHTTCEECCG--GGGGGCCCSEEEECSC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHH----HHHH-HhhcccccCc--cccccccceeeecccc
Confidence 57999999998 9999999999999999999988764221 1111 1112233222 1223457999998874
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.87 E-value=0.0069 Score=49.90 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCC-ceEEEecccccccc-----cCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEPIL-----LEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~~~-----~~~d~Vih~ 186 (447)
.+.+|+|+|++|.+|...+..+...|. +|+++++++.. .+ ....++.. .++.-..|..+... .++|+||.+
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~-~~-~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEA-VE-AAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHH-HH-HHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhh-HH-HHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence 567899999999999999998888885 88888765321 11 11222221 11111122222211 348999999
Q ss_pred cc
Q 013226 187 AC 188 (447)
Q Consensus 187 Ag 188 (447)
+|
T Consensus 105 ~g 106 (170)
T d1jvba2 105 NN 106 (170)
T ss_dssp CC
T ss_pred cc
Confidence 87
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.043 Score=41.84 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
+++++|.| +|++|-+++..|.+.|.+|+++.|..
T Consensus 21 p~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 21 PERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEEC-CChhhHHHHHHhhccccEEEEEeecc
Confidence 46799998 89999999999999999999998854
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.83 E-value=0.06 Score=41.19 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.+++++|.| +|+||-+++..|.+.|.+|+++.+...
T Consensus 21 ~p~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 21 VPGKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCeEEEEC-CChHHHHHHHHHHHcCCceEEEEeecc
Confidence 457899999 899999999999999999999987543
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.81 E-value=0.058 Score=44.61 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=34.3
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
....++|+|+|+| +|..|-..+..|.++|++|+++.+..
T Consensus 38 ~~~~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 38 LPAVQKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp CSCSSCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCCCcEEEEEC-ccHHHHHHHHHHHhhccceEEEeccC
Confidence 3455789999999 89999999999999999999998753
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.75 E-value=0.0061 Score=50.57 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEE-EecCCCCCccccccccCCCceEEEec---cccccc--c--cCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIV-VDNYFTGKKDNLIHHFGNPRFELIRH---DVVEPI--L--LEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~-l~r~~~~~~~~~~~~~~~~~v~~~~~---D~~~~~--~--~~~d~Vih 185 (447)
.|.+|+|.|+ |.||...+..+...|.++++ +++++ .+.+.. +.++.. ++++. |..+.. + .++|+||.
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~-~k~~~a-~~~Ga~--~~i~~~~~~~~~~i~~~t~gg~D~vid 102 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVE-SRLELA-KQLGAT--HVINSKTQDPVAAIKEITDGGVNFALE 102 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCH-HHHHHH-HHHTCS--EEEETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHH-HHHHHH-HHcCCe--EEEeCCCcCHHHHHHHHcCCCCcEEEE
Confidence 5778999986 99999999888888886654 45432 222222 222222 22322 222221 1 25899999
Q ss_pred ecc
Q 013226 186 LAC 188 (447)
Q Consensus 186 ~Ag 188 (447)
|.|
T Consensus 103 ~~G 105 (174)
T d1f8fa2 103 STG 105 (174)
T ss_dssp CSC
T ss_pred cCC
Confidence 987
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=93.73 E-value=0.04 Score=46.28 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=48.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.|+++.|.| -|-||+.+++.|..-|.+|++.++........ ...+...+..++.+..+|+|+.+..
T Consensus 45 ~eL~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~--------~~~~~~~~~l~~ll~~sD~i~~~~p 113 (193)
T d1mx3a1 45 ARIRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVER--------ALGLQRVSTLQDLLFHSDCVTLHCG 113 (193)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH--------HHTCEECSSHHHHHHHCSEEEECCC
T ss_pred eeeeCceEEEec-cccccccceeeeeccccceeeccCcccccchh--------hhccccccchhhccccCCEEEEeec
Confidence 567999999998 99999999999999999999998754322111 1112233444555666787775553
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.72 E-value=0.046 Score=41.83 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=31.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
+++|+|.| .|++|-+++..|.+.|.+|+++.|..
T Consensus 22 p~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVG-SGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhccccceeeehhc
Confidence 47899998 89999999999999999999999854
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.044 Score=45.96 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.-++|.|.|+ |.+|+.++..++..|++|++.|++++
T Consensus 3 ~IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 3 IVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eeEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChH
Confidence 3478999995 99999999999999999999998754
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=93.58 E-value=0.042 Score=46.31 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=48.2
Q ss_pred cccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 110 GLQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 110 ~~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
+..+.|++|.|.| .|.||+.+++.|..-|.+|++.++........ .....+-.++.+..+|+|+.+..
T Consensus 38 g~el~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~----------~~~~~~~l~~~l~~sDii~~~~p 105 (197)
T d1j4aa1 38 GREVRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELEK----------KGYYVDSLDDLYKQADVISLHVP 105 (197)
T ss_dssp BCCGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH----------TTCBCSCHHHHHHHCSEEEECSC
T ss_pred CccccCCeEEEec-ccccchhHHHhHhhhcccccccCccccccccc----------ceeeeccccccccccccccccCC
Confidence 3567899999999 99999999999999999999988643211110 01123445556677898886654
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.059 Score=52.61 Aligned_cols=105 Identities=10% Similarity=0.118 Sum_probs=67.1
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCC----------cccc------------ccccCCCceEEE
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGK----------KDNL------------IHHFGNPRFELI 168 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~----------~~~~------------~~~~~~~~v~~~ 168 (447)
.+...+|+|.|+ |++|.++++.|+..|. +++++|.+.-.. .+.+ .+.-...++..+
T Consensus 22 ~L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~ 100 (529)
T d1yova1 22 ALESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV 100 (529)
T ss_dssp HHHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEE
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 345668999995 8899999999999997 788887532110 0100 000011234455
Q ss_pred eccccc------ccccCCCEEEEeccCCCCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCccccC
Q 013226 169 RHDVVE------PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 234 (447)
Q Consensus 169 ~~D~~~------~~~~~~d~Vih~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~~v~g 234 (447)
..+..+ ..+.++|+||.+.. |......+-+.|++.++.+|.+.+.+.||
T Consensus 101 ~~~~~~~~~~~~~~~~~~dvVv~~~~-----------------~~~~~~~l~~~c~~~~ip~i~~~~~G~~G 155 (529)
T d1yova1 101 EESPENLLDNDPSFFCRFTVVVATQL-----------------PESTSLRLADVLWNSQIPLLICRTYGLVG 155 (529)
T ss_dssp SSCHHHHHHSCGGGGGGCSEEEEESC-----------------CHHHHHHHHHHHHHHTCCEEEEEEETTEE
T ss_pred cCCchhhhhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEeccCCEE
Confidence 544322 23557899997642 23334467788888899999999888766
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.55 E-value=0.051 Score=42.01 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
+++++|.| +|+||-+++..|.+.|.+|+++.|..
T Consensus 22 pk~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEEc-CCccHHHHHHHHhcCCcEEEEEeecc
Confidence 47899999 89999999999999999999999864
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.51 E-value=0.055 Score=42.37 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.+++++|.| +|++|-+++..|.+.|.+|+++.+...
T Consensus 34 ~~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 34 ADNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCEEEEEC-CchHHHHHHHHHHhhCcceeeeeeccc
Confidence 457899998 899999999999999999999988543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=93.47 E-value=0.044 Score=45.09 Aligned_cols=34 Identities=29% Similarity=0.232 Sum_probs=31.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.|+|.|.| +|.+|..++..|.++|++|.+++|++
T Consensus 1 sk~iaIiG-aG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLG-LGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 37899999 59999999999999999999999864
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.45 E-value=0.056 Score=41.07 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
.+++++|.| +|++|-+++..|.+.|.+|+++.+.+
T Consensus 20 ~p~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 20 LPQHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHhhcccceEEEeeec
Confidence 346899998 89999999999999999999998753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.37 E-value=0.0095 Score=49.41 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=44.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCc-eEEEeccccccc---c--cCCCEEEEe
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPI---L--LEVDQIYHL 186 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~---~--~~~d~Vih~ 186 (447)
.|.+|+|.|+ |.||...++.+...|+ +|+++++++.+ .+..+.++... +++-+.+..+.. . .++|+||.+
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r--~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~ 103 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPIC--VEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMA 103 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHH--HHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCEEEEEcC-Ccchhhhhhhhhcccccccccccchhhh--HHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEc
Confidence 5667999985 9999999988888897 78888875322 22222222211 112122222211 1 358999999
Q ss_pred cc
Q 013226 187 AC 188 (447)
Q Consensus 187 Ag 188 (447)
+|
T Consensus 104 ~g 105 (174)
T d1jqba2 104 GG 105 (174)
T ss_dssp SS
T ss_pred cC
Confidence 97
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=93.35 E-value=0.034 Score=45.90 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=44.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCc-eEEEecccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPR-FELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
.+|-|.| -|.+|..+++.|++.|++|++.+|+++...+-......... .-....+.....+..+|.+|-+.
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~ 74 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLV 74 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEec
Confidence 3588998 79999999999999999999999865432221111111111 11122222333456688888765
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.11 Score=45.14 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=31.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNY 148 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~ 148 (447)
.++..+|+|.| .|++|.+++..|++.|. +++++|.+
T Consensus 27 kL~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 27 ALKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 45778999999 89999999999999998 77888754
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.17 E-value=0.054 Score=41.65 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=30.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
+++++|.| +|++|-+++..|.+.|.+|+++.+.+
T Consensus 32 ~~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp HSEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEEC-CcHHHHHHHHHhhcccceEEEEeccc
Confidence 36789988 89999999999999999999998753
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.09 E-value=0.012 Score=47.57 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=43.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
|+|.+.| .|-+|+++++.|++.|++|++.+|+.+.. +++....+ +.+ ..-.++.+.++|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~-~~l~~~~g---~~~--~~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERS-KEIAEQLA---LPY--AMSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHH-HHHHHHHT---CCB--CSSHHHHHHTCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhH-Hhhccccc---eee--echhhhhhhccceeeeec
Confidence 6788887 99999999999999999999998864322 22222211 111 122234456799999664
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.94 E-value=0.077 Score=40.78 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
.+++++|.| +|+||-+++..|.+.|.+|+++.|+
T Consensus 19 ~P~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 19 CPGKTLVVG-ASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCeEEEEC-CCccHHHHHHHHhhcCCeEEEEEec
Confidence 346799998 8999999999999999999999864
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.92 E-value=0.034 Score=45.28 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEe--cccccccccCCCEEEEeccCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIR--HDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~--~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
.+.+|+|.| .|-.|..-++...+-|..|.++|.+.... +.+..... ..++... .+..++.+.+.|+||.++-+.
T Consensus 31 ~pa~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~~l-~~l~~~~~-~~~~~~~~~~~~l~~~~~~aDivI~aalip 106 (168)
T d1pjca1 31 KPGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERL-SYLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLVP 106 (168)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CCcEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHHHH-HHHHHhhc-ccceeehhhhhhHHHhhccCcEEEEeeecC
Confidence 456899999 89999999999999999999999864422 22222211 1233332 334556678899999988653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.92 E-value=0.037 Score=45.62 Aligned_cols=72 Identities=19% Similarity=0.046 Sum_probs=44.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCce-EEEecccccc------cccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRF-ELIRHDVVEP------ILLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~D~~~~------~~~~~d~Vih 185 (447)
.|.+|+|+| .|.||...+..+...|+ +|++.+.++. + .++.+.++...+ +....|.... .-.++|+||.
T Consensus 28 ~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~-r-~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie 104 (174)
T d1e3ia2 28 PGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGE-K-FPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLD 104 (174)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGG-G-HHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchH-H-HHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence 667899997 59999999999999998 5666666432 2 222333332221 1112221111 1246999999
Q ss_pred ecc
Q 013226 186 LAC 188 (447)
Q Consensus 186 ~Ag 188 (447)
|+|
T Consensus 105 ~~G 107 (174)
T d1e3ia2 105 CAG 107 (174)
T ss_dssp SSC
T ss_pred ecc
Confidence 997
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.88 E-value=0.039 Score=45.56 Aligned_cols=72 Identities=14% Similarity=0.033 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCC-ceEEEecccccc------cccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVVEP------ILLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~~~------~~~~~d~Vih 185 (447)
.|.+|+|+| .|.+|...+..+...|. +|+++++++++. ++...++.. .++..+.|.... .-.++|++|.
T Consensus 29 ~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl--~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~ 105 (176)
T d1d1ta2 29 PGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKF--EKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFE 105 (176)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGH--HHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred CCCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHH--HHHHhcCCcEEECccccchHHHHHHHHhccccceEEEE
Confidence 567899998 59999999999999995 899999864422 222222221 222222222111 1246999999
Q ss_pred ecc
Q 013226 186 LAC 188 (447)
Q Consensus 186 ~Ag 188 (447)
+.|
T Consensus 106 ~~g 108 (176)
T d1d1ta2 106 VIG 108 (176)
T ss_dssp CSC
T ss_pred eCC
Confidence 987
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.86 E-value=0.17 Score=39.56 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=48.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhC-CCeEEEE-ecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCCCCCC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDR-GDSVIVV-DNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 194 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~-G~~V~~l-~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~~~~~ 194 (447)
||.|.|++|-+|+.+++.+.+. +.++... ++. +. +......++|+||.+.-+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~-----~~----------------~~~~~~~~~DvvIDFS~p----- 54 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG-----DP----------------LSLLTDGNTEVVIDFTHP----- 54 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT-----CC----------------THHHHTTTCSEEEECCCT-----
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-----Cc----------------hhhhccccCCEEEEcccH-----
Confidence 6899999999999999987775 4566553 321 00 011112468999987632
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Q 013226 195 YKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTST 229 (447)
Q Consensus 195 ~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS 229 (447)
..+...++.|.+.|+.+|.=+|
T Consensus 55 -------------~~~~~~~~~~~~~~~~~ViGTT 76 (135)
T d1yl7a1 55 -------------DVVMGNLEFLIDNGIHAVVGTT 76 (135)
T ss_dssp -------------TTHHHHHHHHHHTTCEEEECCC
T ss_pred -------------HHHHHHHHHHHhcCCCEEEecc
Confidence 1234678889999988765444
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.84 E-value=0.08 Score=40.38 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.+++++|.| +|++|-.++..|.+.|.+|.++.+.+.
T Consensus 21 ~~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 21 PGSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccch
Confidence 467899998 899999999999999999999988643
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=92.81 E-value=0.044 Score=45.07 Aligned_cols=107 Identities=11% Similarity=0.078 Sum_probs=62.6
Q ss_pred CCeEEEEcCCChhHHH--HHHHHHhC----CCeEEEEecCCCCCcc---ccccc--cCCCceEEEecccccccccCCCEE
Q 013226 115 SLRILVTGGAGFVGSH--LVDRLMDR----GDSVIVVDNYFTGKKD---NLIHH--FGNPRFELIRHDVVEPILLEVDQI 183 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~--l~~~L~~~----G~~V~~l~r~~~~~~~---~~~~~--~~~~~v~~~~~D~~~~~~~~~d~V 183 (447)
+|||.|.|| |.+|.. ++..|+.. +.+++++|+++...+. ...+. .......+...+-.++++.++|+|
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 478999995 878754 34445543 4599999986442221 11111 112345565655666788999999
Q ss_pred EEeccCCCCCCcccChHH------------------------HHHHHHHHHHHHHHHHHHCCC
Q 013226 184 YHLACPASPVHYKFNPVK------------------------TIKTNVVGTLNMLGLAKRVGA 222 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~~~~------------------------~~~~Nv~gt~~ll~aa~~~g~ 222 (447)
|+.++......++.+... ....|+.-...+++.+++...
T Consensus 81 v~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p 143 (171)
T d1obba1 81 INTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSP 143 (171)
T ss_dssp EECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCT
T ss_pred eeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCc
Confidence 999875321111000000 012477778888888888765
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=92.75 E-value=0.067 Score=46.10 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
+.++|+|+| +|..|...+.+|.++|++|.+++|.
T Consensus 5 ~~~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLG-SGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 346799999 8999999999999999999999985
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=92.63 E-value=0.055 Score=43.34 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=42.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-CeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~A 187 (447)
|+|.+.| .|-+|+++++.|++.| ++|.+.+|+.+.. +.+.... .+.... | .+.+.++|+||-+.
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~-~~l~~~~---~~~~~~-~--~~~v~~~Div~lav 65 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAEKR-ERLEKEL---GVETSA-T--LPELHSDDVLILAV 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHHHH-HHHHHHT---CCEEES-S--CCCCCTTSEEEECS
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCChhHH-HHhhhhc---cccccc-c--cccccccceEEEec
Confidence 6799998 5999999999999887 8999998864322 2222221 233222 1 12356689999653
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.61 E-value=0.044 Score=45.06 Aligned_cols=35 Identities=26% Similarity=0.168 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~ 149 (447)
.|.+|+|.|+ |++|...+..+...|. +|+++++.+
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~ 63 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINK 63 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcH
Confidence 6778999998 7799999999999985 788887753
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.51 E-value=0.033 Score=45.70 Aligned_cols=72 Identities=21% Similarity=0.130 Sum_probs=41.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEecCCCCCccccccccCCCc-eEEEec-cccccc-----ccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDS-VIVVDNYFTGKKDNLIHHFGNPR-FELIRH-DVVEPI-----LLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~-V~~l~r~~~~~~~~~~~~~~~~~-v~~~~~-D~~~~~-----~~~~d~Vih 185 (447)
.|.+|+|.|+ |++|...++.+...|.. |++++++ +.+.+ +...++... +++.+. |..... -.++|+||.
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~-~~k~~-~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid 104 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDIN-KDKFA-RAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFE 104 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSC-GGGHH-HHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEccc-HHHHH-HHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeee
Confidence 5678999997 68999999988888974 5555553 22222 222333222 111111 111111 146999999
Q ss_pred ecc
Q 013226 186 LAC 188 (447)
Q Consensus 186 ~Ag 188 (447)
+.|
T Consensus 105 ~~G 107 (176)
T d2fzwa2 105 CIG 107 (176)
T ss_dssp CSC
T ss_pred cCC
Confidence 987
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=92.42 E-value=0.083 Score=44.46 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=47.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.+++|.|.| .|-||+.+++.|..-|.+|++.++....... ..+.+. ..+..+..+|+|+.+..
T Consensus 41 ~~l~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~--------~~~~~~---~l~~l~~~~D~v~~~~p 106 (199)
T d1dxya1 41 KELGQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH--------PDFDYV---SLEDLFKQSDVIDLHVP 106 (199)
T ss_dssp CCGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSCC--------TTCEEC---CHHHHHHHCSEEEECCC
T ss_pred ccccceeeeeee-cccccccccccccccceeeeccCCccchhhh--------cchhHH---HHHHHHHhcccceeeec
Confidence 467889999999 9999999999999999999999875332211 123332 24455667898886653
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=92.37 E-value=0.089 Score=45.57 Aligned_cols=35 Identities=29% Similarity=0.223 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
..++|+|+| +|..|..++..|.++|++|+++.|..
T Consensus 3 ~~~kV~IiG-aG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVG-GSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 557899999 89999999999999999999998754
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.36 E-value=0.17 Score=38.09 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG 151 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~ 151 (447)
..+.+|.|.| +|.+|+-++....+.|++|++++.....
T Consensus 9 ~~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 9 PAATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp TTCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CCCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 3556899999 8999999999999999999999976443
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=92.25 E-value=0.033 Score=46.54 Aligned_cols=38 Identities=16% Similarity=-0.011 Sum_probs=30.8
Q ss_pred CCCeEEE-EcCCChhHHHHHHHHHhCCCeEEEEecCCCC
Q 013226 114 KSLRILV-TGGAGFVGSHLVDRLMDRGDSVIVVDNYFTG 151 (447)
Q Consensus 114 ~~~~ilV-tGasG~IG~~l~~~L~~~G~~V~~l~r~~~~ 151 (447)
.|.+++| +||+|.+|...++.....|.+|+++.|..+.
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~ 66 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN 66 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccc
Confidence 4555666 5899999999998888889999999886544
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.24 E-value=0.079 Score=40.95 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.+++++|.| +|+||-+++..|.+.|.+|+++.+...
T Consensus 25 ~p~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 25 VPGKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CCSEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred cCCeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 346899999 899999999999999999999987543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=92.12 E-value=0.053 Score=45.42 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=48.3
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.++++.|.| .|.||+.+++.|..-|.+|+..++......... .......+..++.+..+|+|+.+..
T Consensus 43 ~~l~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-------~~~~~~~~~l~~ll~~sD~v~l~~p 112 (191)
T d1gdha1 43 EKLDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEA-------SYQATFHDSLDSLLSVSQFFSLNAP 112 (191)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHH-------HHTCEECSSHHHHHHHCSEEEECCC
T ss_pred ceecccceEEee-cccchHHHHHHHHhhccccccccccccccchhh-------cccccccCCHHHHHhhCCeEEecCC
Confidence 467899999999 999999999999999999999887433222111 1112333445556667888775543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=92.06 E-value=0.047 Score=45.68 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
+.+++|.|.| +|-.|.+++..|.+.|++|++.+|+.+
T Consensus 5 ~~m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~~~ 41 (189)
T d1n1ea2 5 LYLNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMNEE 41 (189)
T ss_dssp CCEEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred ceeceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence 3556799999 899999999999999999999998643
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.05 E-value=0.063 Score=41.36 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
.+++++|.| +|+||-+++..|.+.|.+|+++.|.+.
T Consensus 24 ~p~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 24 IPKKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp CCSEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred cCCeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 346899998 899999999999999999999988644
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=91.84 E-value=0.075 Score=44.28 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=47.4
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
..+.++++.|.| .|.||+.+++.|..-|.+|...++........ . ...+...+..++.+..+|+|+.+..
T Consensus 40 ~~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~--~-----~~~~~~~~~l~~~l~~sD~v~~~~p 109 (188)
T d2naca1 40 YDLEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE--K-----ELNLTWHATREDMYPVCDVVTLNCP 109 (188)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH--H-----HHTCEECSSHHHHGGGCSEEEECSC
T ss_pred eeccccceeecc-ccccchhhhhhhhccCceEEEEeecccccccc--c-----cccccccCCHHHHHHhccchhhccc
Confidence 457889999999 99999999999999999999998753221111 0 1112333444555667787765543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.83 E-value=0.084 Score=43.58 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~ 148 (447)
.+++|+|.| +|..|...+..|.++|+ +|+++.+.
T Consensus 3 ~~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~ 37 (196)
T d1gtea4 3 YSAKIALLG-AGPASISCASFLARLGYSDITIFEKQ 37 (196)
T ss_dssp GGCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEec
Confidence 367899999 89999999999999998 59998874
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.75 E-value=0.092 Score=46.07 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=30.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
+|+|+|+| +|.-|...+.+|.++|++|.++.+.
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAE 33 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 58899998 8999999999999999999999764
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=91.71 E-value=0.071 Score=43.79 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=30.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
|+|-|.| .|.+|..++++|++.|++|.+.+|+.+
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~ 35 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYS 35 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 5788888 999999999999999999999998644
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.59 E-value=0.11 Score=46.96 Aligned_cols=34 Identities=38% Similarity=0.706 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
+.|+|+|+| +|.-|...|..|.+.|++|.++.++
T Consensus 1 k~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~ 34 (314)
T d2bi7a1 1 KSKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQR 34 (314)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECC
Confidence 358899999 8999999999999999999999875
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=91.59 E-value=0.099 Score=42.26 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD--SVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~--~V~~l~r~~ 149 (447)
.||+|+|.| +|++|-.++..|.+.+. +|+++++.+
T Consensus 1 ~gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 478999999 89999999999999885 788887654
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.57 E-value=1.3 Score=33.10 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=27.7
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHhCCCeEEEEe
Q 013226 116 LRILVTGGA---GFVGSHLVDRLMDRGDSVIVVD 146 (447)
Q Consensus 116 ~~ilVtGas---G~IG~~l~~~L~~~G~~V~~l~ 146 (447)
|+|.|.|+| +-.|..+.+.|++.|++|+.+.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVn 35 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVN 35 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEc
Confidence 579999988 6789999999999999988875
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.17 Score=47.71 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecC
Q 013226 113 RKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNY 148 (447)
Q Consensus 113 ~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~ 148 (447)
++..+|||.|+ |++|.++++.|+..|. +++++|.+
T Consensus 35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D 70 (426)
T d1yovb1 35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD 70 (426)
T ss_dssp HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCC
T ss_pred HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45678999995 7799999999999998 78888764
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=91.54 E-value=0.082 Score=45.47 Aligned_cols=71 Identities=17% Similarity=0.139 Sum_probs=47.7
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
.+++|++|+|-| -|-+|+++++.|.+.|.+|++.+.+... +...........+.. .+.....||+++=||-
T Consensus 35 ~~l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~~~----~~~~~~~~g~~~~~~--~~~~~~~cDIl~PcA~ 105 (230)
T d1leha1 35 DSLEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAA----VSAAVAEEGADAVAP--NAIYGVTCDIFAPCAL 105 (230)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH----HHHHHHHHCCEECCG--GGTTTCCCSEEEECSC
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccHHH----HHHHHHhcCCcccCC--cccccccccEeccccc
Confidence 357899999999 9999999999999999999998764221 111111112222222 2223356999999985
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.49 E-value=0.055 Score=44.48 Aligned_cols=72 Identities=18% Similarity=-0.004 Sum_probs=44.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCC-ceEEEecccc-ccc-----ccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDVV-EPI-----LLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~~-~~~-----~~~~d~Vih 185 (447)
.|.+|+|.|+ |.+|...++.+...|. +|++++++..+. ++...++.. -+++...|.. +.. -.++|+||.
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl--~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid 103 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKF--PKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE 103 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGH--HHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHH--HHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEE
Confidence 6778999985 9999999999988997 688887753322 222222221 2222223321 111 136999999
Q ss_pred ecc
Q 013226 186 LAC 188 (447)
Q Consensus 186 ~Ag 188 (447)
++|
T Consensus 104 ~~g 106 (174)
T d1p0fa2 104 CAG 106 (174)
T ss_dssp CSC
T ss_pred cCC
Confidence 986
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=91.37 E-value=0.16 Score=41.84 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=32.2
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFT 150 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~ 150 (447)
.+++++|+|.| +|+.|+.++..|.+.|. ++++++|+.+
T Consensus 15 ~l~~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~ 53 (182)
T d1vi2a1 15 DIKGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDE 53 (182)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred CcCCCEEEEEC-CcHHHHHHHHHHhhcCCceEeeeccchH
Confidence 46889999999 58999999999999998 6778887643
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.87 E-value=0.096 Score=43.42 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=46.2
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEecc
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLAC 188 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag 188 (447)
....++++.|.| .|.||+.+++.|..-|.+|++.++...+.... . ..+.+ ...++.+..+|+|+.+..
T Consensus 40 ~~l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~--~----~~~~~---~~l~ell~~sDiv~~~~P 107 (184)
T d1ygya1 40 TEIFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA--Q----LGIEL---LSLDDLLARADFISVHLP 107 (184)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHH--H----HTCEE---CCHHHHHHHCSEEEECCC
T ss_pred ccccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHHh--h----cCcee---ccHHHHHhhCCEEEEcCC
Confidence 457889999999 89999999999999999999988753221111 0 01222 223456667888776553
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=90.82 E-value=0.072 Score=42.95 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=49.9
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccC
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACP 189 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~ 189 (447)
..+.||+++|.| -|.+|+-++++|...|.+|+++..++-...+... ..++... .++++...|+||-+.|.
T Consensus 19 ~~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~m-----dGf~v~~---~~~a~~~aDi~vTaTGn 88 (163)
T d1v8ba1 19 FLISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQAVM-----EGFNVVT---LDEIVDKGDFFITCTGN 88 (163)
T ss_dssp CCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT-----TTCEECC---HHHHTTTCSEEEECCSS
T ss_pred ceecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchhhHHHHh-----cCCccCc---hhHccccCcEEEEcCCC
Confidence 356899999999 9999999999999999999999875432222211 1233322 23556678999987764
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=90.63 E-value=0.13 Score=36.05 Aligned_cols=32 Identities=25% Similarity=0.155 Sum_probs=29.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
|+|.|.| +|.+|+-++..-.+-|.+|++++-.
T Consensus 2 k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~ 33 (78)
T d3etja2 2 KQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLD 33 (78)
T ss_dssp EEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTT
T ss_pred CEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCC
Confidence 6799999 8999999999999999999999864
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=90.47 E-value=0.14 Score=45.60 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
.+|+|+|+| +|..|...+.+|.++|++|.++.+.
T Consensus 29 ~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~ 62 (370)
T d2iida1 29 NPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEAS 62 (370)
T ss_dssp SCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 567999999 8999999999999999999999764
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=90.17 E-value=0.13 Score=44.83 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=28.3
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
|+|+| +|.+|..++.+|+++|.+|+++++.
T Consensus 7 vvIIG-aGi~Gls~A~~La~~G~~V~vlE~~ 36 (276)
T d1ryia1 7 AVVIG-GGIIGSAIAYYLAKENKNTALFESG 36 (276)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 89998 8999999999999999999999874
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=89.86 E-value=0.25 Score=42.13 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=32.6
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
...+++|+|.| +|..|-..+..|.++|++|+++.+.
T Consensus 46 ~~~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~ 81 (233)
T d1djqa3 46 TKNKDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTA 81 (233)
T ss_dssp CSSCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred ccCCceEEEEc-ccHHHHHHHHHHHHhccceeeEeec
Confidence 35778999999 8999999999999999999999864
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.83 E-value=0.89 Score=35.36 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=55.1
Q ss_pred CCCeEEEEcCC---ChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEecccccccccCCCEEEEeccCC
Q 013226 114 KSLRILVTGGA---GFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPILLEVDQIYHLACPA 190 (447)
Q Consensus 114 ~~~~ilVtGas---G~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~Vih~Ag~~ 190 (447)
+.|+|.|+|+| +-.|..+++.|.+.|++|+.+.- +..++. . .-.-.++.+ .-..+|.|+-+..
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP----~~~~i~------G-~~~~~sl~d-lp~~iD~v~i~vp-- 83 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNP----KYEEVL------G-RKCYPSVLD-IPDKIEVVDLFVK-- 83 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT----TCSEET------T-EECBSSGGG-CSSCCSEEEECSC--
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECC----cccccC------C-Ccccccccc-cCccceEEEEEeC--
Confidence 45789999998 78999999999999999988853 222211 0 111112221 2234788776542
Q ss_pred CCCCcccChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCc
Q 013226 191 SPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 230 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~g~r~v~~SS~ 230 (447)
-..+..+++.|.+.|++.+++.+.
T Consensus 84 ----------------~~~~~~~~~e~~~~g~k~v~~~~G 107 (139)
T d2d59a1 84 ----------------PKLTMEYVEQAIKKGAKVVWFQYN 107 (139)
T ss_dssp ----------------HHHHHHHHHHHHHHTCSEEEECTT
T ss_pred ----------------HHHHHHHHHHHHHhCCCEEEEecc
Confidence 223446777777888877666443
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=89.67 E-value=0.15 Score=44.53 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=29.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
|+|+|+| +|.-|...+.+|.++|++|+++.+.
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRGTDAVLLESS 32 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCCCEEEEecC
Confidence 6799999 6999999999999999999999764
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=89.41 E-value=0.3 Score=39.10 Aligned_cols=69 Identities=10% Similarity=0.160 Sum_probs=36.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHh-CC-CeEEEEe-cCCCCCccccccccCCCceEEEec--cc--ccccccCCCEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMD-RG-DSVIVVD-NYFTGKKDNLIHHFGNPRFELIRH--DV--VEPILLEVDQIYHLA 187 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~-~G-~~V~~l~-r~~~~~~~~~~~~~~~~~v~~~~~--D~--~~~~~~~~d~Vih~A 187 (447)
..++.|.| +|.||+.+...+++ .. .+++++. |+.........+.. .+.+... |. .+..+.++|+||.+.
T Consensus 4 kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~---~i~~~~~~~d~l~~~~~~~~iDiVf~AT 79 (157)
T d1nvmb1 4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM---GVTTTYAGVEGLIKLPEFADIDFVFDAT 79 (157)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT---TCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhc---CCcccccceeeeeecccccccCEEEEcC
Confidence 35799999 99999976544554 33 3777764 43332221111111 2222222 21 122456789999753
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=89.35 E-value=0.26 Score=37.18 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh---CCCeEEEEecCCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMD---RGDSVIVVDNYFT 150 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~---~G~~V~~l~r~~~ 150 (447)
.+++++|.| .|++|-+++..|.+ .|.+|.++.|.+.
T Consensus 17 ~p~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 17 APKRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp CCSEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred cCCeEEEEC-CChHHHHHHHHhHhhcccccccceeccccc
Confidence 347899999 89999999976544 4889999988644
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.22 E-value=0.27 Score=39.52 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
.+.+|+|.|+ |.+|...+..+...|++|++++++
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecch
Confidence 5778999885 999999999888889999999875
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.01 E-value=0.19 Score=41.83 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
|+|.|.| .|++|..++..| ++|++|+++|.++
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILP 32 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCH
Confidence 6899997 999999999755 5799999998753
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.90 E-value=0.27 Score=39.03 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=28.2
Q ss_pred CCeEEEE-cCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 115 SLRILVT-GGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 115 ~~~ilVt-GasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
++.++|. .+.||||..++..|.++|.+|+++.+.
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~ 73 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGV 73 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecC
Confidence 3445554 467999999999999999999999875
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.81 E-value=0.2 Score=40.73 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=61.8
Q ss_pred CeEEEEcC-CChhHHHHHHHHHhCC----CeEEEEecCCCCCccccccc-------cCCCceEEEecccccccccCCCEE
Q 013226 116 LRILVTGG-AGFVGSHLVDRLMDRG----DSVIVVDNYFTGKKDNLIHH-------FGNPRFELIRHDVVEPILLEVDQI 183 (447)
Q Consensus 116 ~~ilVtGa-sG~IG~~l~~~L~~~G----~~V~~l~r~~~~~~~~~~~~-------~~~~~v~~~~~D~~~~~~~~~d~V 183 (447)
+||.|.|| +.+.+..++..+.... .++..+|.++.....+.... .......+....-..+++.+.|+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 57899996 4455566655554432 38888887543221111110 012234444444345567899999
Q ss_pred EEeccCCCCCCcccC----------------hH--HHHHHHHHHHHHHHHHHHHCCC-eEEEEeC
Q 013226 184 YHLACPASPVHYKFN----------------PV--KTIKTNVVGTLNMLGLAKRVGA-RFLLTST 229 (447)
Q Consensus 184 ih~Ag~~~~~~~~~~----------------~~--~~~~~Nv~gt~~ll~aa~~~g~-r~v~~SS 229 (447)
|++|+......+..+ +. .....|+.-.+.+++.+++... -+++.-|
T Consensus 82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 999986432111100 00 1224577777788888888765 4444433
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.09 E-value=0.23 Score=41.81 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=28.1
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
|+|+| +|.-|...|..|+++|++|.++.+.
T Consensus 8 viViG-aG~~Gl~~A~~La~~G~~V~vlE~~ 37 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDGKKVLHIDKQ 37 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCCEEEEcCC
Confidence 78998 9999999999999999999999875
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=87.99 E-value=0.07 Score=43.62 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=41.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEEec--cccccc-----ccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELIRH--DVVEPI-----LLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~--D~~~~~-----~~~~d~Vih 185 (447)
.+.+|+|.|+ |.+|...++.+...|. .|+++++++. +.+ .....+.. .++.. |..+.. -.++|+||.
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~-k~~-~~~~~ga~--~~i~~~~~~~~~~~~~~~~~g~d~vid 106 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEE-KLK-LAERLGAD--HVVDARRDPVKQVMELTRGRGVNVAMD 106 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHH-HHH-HHHHTTCS--EEEETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhH-HHH-HHhhcccc--eeecCcccHHHHHHHhhCCCCceEEEE
Confidence 4678999885 9999999988877886 5566666432 222 22222221 22222 211111 135899999
Q ss_pred ecc
Q 013226 186 LAC 188 (447)
Q Consensus 186 ~Ag 188 (447)
++|
T Consensus 107 ~~g 109 (172)
T d1h2ba2 107 FVG 109 (172)
T ss_dssp SSC
T ss_pred ecC
Confidence 987
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=87.79 E-value=0.26 Score=43.05 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=28.1
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
|+|+| +|..|..++.+|+++|.+|+++++.
T Consensus 6 vvIIG-aGi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 6 VIVVG-AGSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 88888 8999999999999999999999874
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=87.39 E-value=0.39 Score=38.79 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
++++|+|.| +|++|-+++..|.+.|.+|.++.+.
T Consensus 2 ~~~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~~~~ 35 (185)
T d1q1ra1 2 ANDNVVIVG-TGLAGVEVAFGLRASGWEGNIRLVG 35 (185)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCCEEEEC-CcHHHHHHHHHHHHcCCceEEEEec
Confidence 467899998 8999999999999999877665443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.33 E-value=0.23 Score=40.27 Aligned_cols=72 Identities=22% Similarity=0.122 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCC-ceEEEeccc-cccc-----ccCCCEEEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNP-RFELIRHDV-VEPI-----LLEVDQIYH 185 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~-~v~~~~~D~-~~~~-----~~~~d~Vih 185 (447)
.+.+|+|+|+ |.+|...+..+...|. .|+++++.+. +.+ ....++.. -+++.+.|. .+.. -.++|+||.
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~-rl~-~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid 104 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPD-KFE-KAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLE 104 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-GHH-HHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHH-HHH-HHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeee
Confidence 6678999985 6688888888888876 6777776432 222 22222221 121111211 1111 136999999
Q ss_pred ecc
Q 013226 186 LAC 188 (447)
Q Consensus 186 ~Ag 188 (447)
+.|
T Consensus 105 ~~G 107 (175)
T d1cdoa2 105 CVG 107 (175)
T ss_dssp CSC
T ss_pred ecC
Confidence 987
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=86.98 E-value=0.69 Score=37.74 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=31.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCC
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFT 150 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~ 150 (447)
+-+|+|.| .|-.|..-++...+-|+.|.++|.+..
T Consensus 29 pa~VvViG-aGvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 29 PARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 45799999 899999999999999999999998754
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=86.97 E-value=0.18 Score=40.91 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=42.2
Q ss_pred CCCeEEEEcCCChhHH-HHHHHHHhC-----CCeEEEEecCCCCCc---ccccccc--CCCceEEEecccccccccCCCE
Q 013226 114 KSLRILVTGGAGFVGS-HLVDRLMDR-----GDSVIVVDNYFTGKK---DNLIHHF--GNPRFELIRHDVVEPILLEVDQ 182 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~-~l~~~L~~~-----G~~V~~l~r~~~~~~---~~~~~~~--~~~~v~~~~~D~~~~~~~~~d~ 182 (447)
+..+|.|.||.+ +|. .++..|+.+ +.+|+++|.+++..+ ..+.+.. ......+....-..+++.+.|+
T Consensus 2 k~~KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~ 80 (167)
T d1u8xx1 2 KSFSIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF 80 (167)
T ss_dssp CCEEEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred CCceEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCE
Confidence 345799999754 444 344455543 238889987644322 1111100 1123333333334567889999
Q ss_pred EEEeccCC
Q 013226 183 IYHLACPA 190 (447)
Q Consensus 183 Vih~Ag~~ 190 (447)
||.+||..
T Consensus 81 Vvitag~~ 88 (167)
T d1u8xx1 81 VMAHIRVG 88 (167)
T ss_dssp EEECCCTT
T ss_pred EEECCCcC
Confidence 99999864
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=86.30 E-value=0.075 Score=44.54 Aligned_cols=70 Identities=26% Similarity=0.176 Sum_probs=42.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCCCCccccccccCCCceEEE----eccccccc-----ccCCCEE
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFTGKKDNLIHHFGNPRFELI----RHDVVEPI-----LLEVDQI 183 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~----~~D~~~~~-----~~~~d~V 183 (447)
.|.+|+|.|+ |.+|...+..+...|. +|+++++++. +.+ .....+ .+.+ ..|..+.. -.++|++
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~-rl~-~a~~~G---a~~~~~~~~~~~~~~i~~~t~g~g~D~v 98 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPA-RLA-HAKAQG---FEIADLSLDTPLHEQIAALLGEPEVDCA 98 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH-HHH-HHHHTT---CEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccch-hhH-hhhhcc---ccEEEeCCCcCHHHHHHHHhCCCCcEEE
Confidence 5678999985 9999888887777787 7778776432 111 112222 2222 12222221 1368999
Q ss_pred EEeccC
Q 013226 184 YHLACP 189 (447)
Q Consensus 184 ih~Ag~ 189 (447)
|.+.|.
T Consensus 99 id~vG~ 104 (195)
T d1kola2 99 VDAVGF 104 (195)
T ss_dssp EECCCT
T ss_pred EECccc
Confidence 999884
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.01 E-value=0.53 Score=41.57 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=32.6
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEec
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDN 147 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r 147 (447)
..+++++|+|-| .|-+|.++++.|.+.|++|+.++-
T Consensus 32 ~~L~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 32 PGFGDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp SSSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEc
Confidence 467899999999 799999999999999999998764
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=85.43 E-value=0.52 Score=40.59 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=32.0
Q ss_pred cCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEec
Q 013226 112 QRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDN 147 (447)
Q Consensus 112 ~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r 147 (447)
+++|++|+|-| .|-+|+++++.|.+.|++|+.++.
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence 56899999998 999999999999999999998764
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.39 E-value=0.53 Score=35.34 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHH---hCCCeEEEEecCC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLM---DRGDSVIVVDNYF 149 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~---~~G~~V~~l~r~~ 149 (447)
.+++++|.| +|++|-+++..|. .+|.+|+++.+..
T Consensus 19 ~p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 19 PPRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp CCSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred cCCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 346899999 5999999996554 4566899998753
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.22 E-value=0.07 Score=45.57 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=24.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEE
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIV 144 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~ 144 (447)
|+|+|+| +|-+|..++.+|+++|++|++
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~~v~v 28 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYHSVLQ 28 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHTTTSS
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCceE
Confidence 6899999 899999999999999986543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.14 E-value=0.62 Score=40.03 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=29.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEecCCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNYFT 150 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~~~ 150 (447)
++|+|+| +|..|..++..|.+.|. +|.++.+...
T Consensus 2 ~~V~IvG-aG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAG-AGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 5799999 89999999999999994 8999988643
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=85.08 E-value=2.3 Score=32.71 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=28.8
Q ss_pred CCCeEEEEcCC---ChhHHHHHHHHHhCCCeEEEEe
Q 013226 114 KSLRILVTGGA---GFVGSHLVDRLMDRGDSVIVVD 146 (447)
Q Consensus 114 ~~~~ilVtGas---G~IG~~l~~~L~~~G~~V~~l~ 146 (447)
..|+|.|+|+| +-.|..+++.|.+.|+.+..+.
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~ 47 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVN 47 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEE
Confidence 45789999998 5689999999999999988874
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=85.00 E-value=0.31 Score=37.36 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=45.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecCCCCCccccccccCCCceEEEeccccccc------ccCCCEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYFTGKKDNLIHHFGNPRFELIRHDVVEPI------LLEVDQIYHLA 187 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D~~~~~------~~~~d~Vih~A 187 (447)
|+|+|.| -|-+|+.+++.| +|+.|.+++.++... +. ....++.++.+|.+++. +..++.+|-+.
T Consensus 1 kHivI~G-~g~~g~~l~~~L--~~~~i~vi~~d~~~~-~~----~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~ 70 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLREL--RGSEVFVLAEDENVR-KK----VLRSGANFVHGDPTRVSDLEKANVRGARAVIVNL 70 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTS--CGGGEEEEESCTTHH-HH----HHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHH--cCCCCEEEEcchHHH-HH----HHhcCccccccccCCHHHHHHhhhhcCcEEEEec
Confidence 5789998 588999999998 466788887653322 11 12346788999987774 34688888554
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=85.00 E-value=0.41 Score=37.93 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=27.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDR--GDSVIVVDN 147 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~--G~~V~~l~r 147 (447)
+|+|.|.|+||.||....+-+.+. .++|.++.-
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 578999999999999999988775 357777653
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=84.94 E-value=0.39 Score=42.38 Aligned_cols=31 Identities=45% Similarity=0.787 Sum_probs=27.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEecC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNY 148 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~ 148 (447)
+|+|+| +|.+|..++.+|+++|. +|.++++.
T Consensus 3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 489998 89999999999999996 69999885
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.85 E-value=0.58 Score=41.19 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
+..+|+|+| +|.-|...+.+|.++|++|.++..+
T Consensus 4 ~~~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa~ 37 (449)
T d2dw4a2 4 KTGKVIIIG-SGVSGLAAARQLQSFGMDVTLLEAR 37 (449)
T ss_dssp CCCEEEEEC-CBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 445799999 8999999999999999999999653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.46 E-value=0.38 Score=42.76 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=28.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
..|+|+| +|.-|..+|.+|++.|++|.++.++
T Consensus 2 ~dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~ 33 (298)
T d1i8ta1 2 YDYIIVG-SGLFGAVCANELKKLNKKVLVIEKR 33 (298)
T ss_dssp EEEEEEC-CSHHHHHHHHHHGGGTCCEEEECSS
T ss_pred ccEEEEC-CcHHHHHHHHHHHhCCCcEEEEECC
Confidence 3589998 8999999999999999999999875
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=83.96 E-value=0.52 Score=37.32 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=26.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDN 147 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r 147 (447)
+|+|.|.|+||.||....+-+.+.. ++|.++.-
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa 35 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA 35 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 4679999999999999999887763 57777653
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.52 E-value=0.38 Score=42.11 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=29.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
+|+|+| .|..|..++..|.+.|.+|.++.+.+
T Consensus 4 ~V~IvG-aGp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIG-AGPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 499999 67999999999999999999998853
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.58 E-value=1 Score=36.32 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=25.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEec
Q 013226 115 SLRILVTGGAGFVGSHLVDRLMDRGD-SVIVVDN 147 (447)
Q Consensus 115 ~~~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r 147 (447)
.++|.|-| -|-||+.+++.|.++.. +|+.+..
T Consensus 2 ~irIaING-fGRIGR~v~Ral~~~~dieiVaINd 34 (172)
T d2czca2 2 KVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITK 34 (172)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred cEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEec
Confidence 35799999 79999999999988753 7776653
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=82.34 E-value=0.67 Score=38.05 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=27.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEecCC
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG--DSVIVVDNYF 149 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G--~~V~~l~r~~ 149 (447)
|||+|.| +|++|-+++..|.+.+ .+|+++.|..
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 6899999 7899999999998874 4788888753
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=82.29 E-value=0.57 Score=42.53 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=27.9
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 118 ILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 118 ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
|+|+| +|+-|..+|.+|++.|++|.++.+-
T Consensus 5 VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 5 AVVIG-TGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEeC-cCHHHHHHHHHHHHCcCeEEEEecC
Confidence 78888 9999999999999999999999873
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.00 E-value=0.86 Score=36.20 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEecC
Q 013226 114 KSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDNY 148 (447)
Q Consensus 114 ~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~ 148 (447)
.+.+|+|.| +|.||...+..+...|++|++++++
T Consensus 27 ~g~~vlv~G-~G~iG~~a~~~a~~~g~~v~~~~~~ 60 (168)
T d1rjwa2 27 PGEWVAIYG-IGGLGHVAVQYAKAMGLNVVAVDIG 60 (168)
T ss_dssp TTCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEee-cccchhhhhHHHhcCCCeEeccCCC
Confidence 567899987 5999999998888899999998874
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=81.87 E-value=0.64 Score=40.26 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=32.1
Q ss_pred ccCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEec
Q 013226 111 LQRKSLRILVTGGAGFVGSHLVDRLMDRGDSVIVVDN 147 (447)
Q Consensus 111 ~~~~~~~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r 147 (447)
.++++++|.|-| .|-+|.++++.|.+.|++|+.+.-
T Consensus 32 ~~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 32 DTLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp CCSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence 357899999999 899999999999999999988753
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.64 E-value=0.84 Score=37.15 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=26.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-CeEEEEec
Q 013226 116 LRILVTGGAGFVGSHLVDRLMDRG-DSVIVVDN 147 (447)
Q Consensus 116 ~~ilVtGasG~IG~~l~~~L~~~G-~~V~~l~r 147 (447)
-+|.|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 2 IKVaING-fGRIGR~v~Ral~~~~dievVaInd 33 (178)
T d1b7go1 2 VNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK 33 (178)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred eEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence 3689998 8999999999999875 47887764
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=80.67 E-value=0.77 Score=38.55 Aligned_cols=31 Identities=29% Similarity=0.612 Sum_probs=27.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEecC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGD-SVIVVDNY 148 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~-~V~~l~r~ 148 (447)
+|+|+| +|.-|...+.+|.++|+ +|+++.+.
T Consensus 2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEAT 33 (347)
T ss_dssp CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECC
Confidence 488998 89999999999999996 79999874
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.16 E-value=1.1 Score=35.32 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=26.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEecCC
Q 013226 117 RILVTGGAGFVGSHLVDRLMDRGDSVIVVDNYF 149 (447)
Q Consensus 117 ~ilVtGasG~IG~~l~~~L~~~G~~V~~l~r~~ 149 (447)
||+|.| +|++|-+++..|. ++.+|+++.+..
T Consensus 2 rVvIIG-gG~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVG-NGPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEEC-CSHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEEC-CcHHHHHHHHHHH-cCCCEEEEeccc
Confidence 688888 8999999999885 578999998753
|